Query 048746
Match_columns 755
No_of_seqs 722 out of 3977
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 12:40:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0923 mRNA splicing factor A 100.0 7E-159 2E-163 1256.2 53.9 725 21-755 161-889 (902)
2 KOG0922 DEAH-box RNA helicase 100.0 5E-144 1E-148 1160.4 55.2 629 119-752 39-670 (674)
3 KOG0924 mRNA splicing factor A 100.0 7E-142 2E-146 1126.7 45.7 629 121-752 346-976 (1042)
4 KOG0925 mRNA splicing factor A 100.0 4E-135 9E-140 1042.1 49.8 638 107-753 24-671 (699)
5 PRK11131 ATP-dependent RNA hel 100.0 4E-118 9E-123 1051.1 58.7 614 127-753 70-701 (1294)
6 TIGR01967 DEAH_box_HrpA ATP-de 100.0 7E-114 2E-118 1019.7 58.8 612 127-751 63-689 (1283)
7 COG1643 HrpA HrpA-like helicas 100.0 2E-109 4E-114 947.4 49.4 620 120-745 39-707 (845)
8 KOG0926 DEAH-box RNA helicase 100.0 3E-107 5E-112 876.6 42.6 632 118-752 243-1026(1172)
9 KOG0920 ATP-dependent RNA heli 100.0 3E-105 6E-110 907.0 45.7 627 118-748 160-848 (924)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.5E-92 5.3E-97 821.3 54.1 575 130-752 1-581 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 4E-92 8.7E-97 821.9 54.3 565 129-752 3-574 (812)
12 PHA02653 RNA helicase NPH-II; 100.0 7.6E-59 1.6E-63 528.8 35.2 392 133-563 166-595 (675)
13 KOG0921 Dosage compensation co 100.0 3.9E-60 8.5E-65 516.4 22.5 624 118-748 365-1072(1282)
14 KOG0330 ATP-dependent RNA heli 100.0 9.2E-54 2E-58 431.7 23.4 335 104-472 57-408 (476)
15 KOG0333 U5 snRNP-like RNA heli 100.0 4.6E-53 1E-57 440.2 24.1 368 73-473 208-626 (673)
16 KOG0331 ATP-dependent RNA heli 100.0 1.8E-51 4E-56 443.3 25.9 334 109-473 92-450 (519)
17 PTZ00110 helicase; Provisional 100.0 1.3E-48 2.7E-53 444.3 29.0 344 98-473 120-486 (545)
18 PRK02362 ski2-like helicase; P 100.0 9.3E-47 2E-51 445.6 38.4 463 109-589 2-543 (737)
19 COG0513 SrmB Superfamily II DN 100.0 3.4E-47 7.5E-52 428.4 28.0 332 108-471 29-380 (513)
20 PRK01172 ski2-like helicase; P 100.0 4.7E-46 1E-50 436.8 36.6 451 109-579 2-509 (674)
21 PLN00206 DEAD-box ATP-dependen 100.0 2.8E-46 6.1E-51 423.9 29.6 343 97-473 110-477 (518)
22 KOG0338 ATP-dependent RNA heli 100.0 2.8E-47 6E-52 395.5 18.0 334 107-473 180-535 (691)
23 PRK11776 ATP-dependent RNA hel 100.0 6.8E-46 1.5E-50 417.6 29.5 332 108-473 4-351 (460)
24 KOG0343 RNA Helicase [RNA proc 100.0 7.1E-47 1.5E-51 395.7 19.6 338 105-473 66-424 (758)
25 KOG0328 Predicted ATP-dependen 100.0 1.8E-45 3.9E-50 356.4 22.7 337 104-473 23-375 (400)
26 PRK04837 ATP-dependent RNA hel 100.0 2.8E-45 6.2E-50 408.2 26.6 331 108-472 8-363 (423)
27 PRK00254 ski2-like helicase; P 100.0 5.3E-44 1.1E-48 421.1 37.3 464 109-589 2-535 (720)
28 PRK11634 ATP-dependent RNA hel 100.0 1.2E-44 2.6E-49 415.0 30.6 333 107-472 5-353 (629)
29 KOG0336 ATP-dependent RNA heli 100.0 8.6E-46 1.9E-50 374.6 17.2 340 102-473 213-574 (629)
30 PRK10590 ATP-dependent RNA hel 100.0 1.2E-44 2.6E-49 405.8 28.3 331 109-473 2-354 (456)
31 KOG0342 ATP-dependent RNA heli 100.0 1.4E-44 3.1E-49 375.9 25.5 334 107-473 81-439 (543)
32 PRK04537 ATP-dependent RNA hel 100.0 4.6E-44 1E-48 408.2 28.3 331 108-472 9-365 (572)
33 KOG0345 ATP-dependent RNA heli 100.0 1.5E-44 3.2E-49 373.0 21.8 351 109-490 5-385 (567)
34 PRK11192 ATP-dependent RNA hel 100.0 1.2E-43 2.6E-48 397.0 30.5 333 109-473 2-354 (434)
35 KOG0340 ATP-dependent RNA heli 100.0 6.2E-44 1.3E-48 356.5 23.6 334 107-473 6-363 (442)
36 KOG0335 ATP-dependent RNA heli 100.0 2.1E-44 4.6E-49 381.8 18.6 345 97-470 63-443 (482)
37 KOG0339 ATP-dependent RNA heli 100.0 5.9E-44 1.3E-48 370.1 19.4 345 97-473 212-577 (731)
38 KOG0341 DEAD-box protein abstr 100.0 5.3E-45 1.2E-49 366.5 9.9 345 97-473 159-530 (610)
39 KOG0326 ATP-dependent RNA heli 100.0 1.2E-43 2.5E-48 349.1 19.1 331 109-473 86-431 (459)
40 PRK01297 ATP-dependent RNA hel 100.0 1E-42 2.3E-47 392.8 29.6 333 107-472 86-443 (475)
41 PTZ00424 helicase 45; Provisio 100.0 5.3E-43 1.1E-47 388.6 26.7 335 106-473 26-376 (401)
42 KOG0348 ATP-dependent RNA heli 100.0 1.9E-42 4.2E-47 361.5 23.4 345 109-472 137-555 (708)
43 KOG0332 ATP-dependent RNA heli 100.0 2.3E-41 5E-46 339.9 20.8 341 105-472 87-444 (477)
44 TIGR03817 DECH_helic helicase/ 100.0 2.6E-40 5.6E-45 386.6 30.0 332 115-470 21-385 (742)
45 COG1202 Superfamily II helicas 100.0 1.1E-40 2.5E-45 350.7 23.9 458 110-601 196-702 (830)
46 KOG0347 RNA helicase [RNA proc 100.0 1.1E-41 2.5E-46 356.8 14.1 338 105-473 178-572 (731)
47 KOG0346 RNA helicase [RNA proc 100.0 8.2E-40 1.8E-44 334.9 19.6 333 108-473 19-412 (569)
48 PLN03137 ATP-dependent DNA hel 100.0 3.3E-39 7.2E-44 373.5 26.6 309 127-473 457-789 (1195)
49 TIGR00614 recQ_fam ATP-depende 100.0 4E-39 8.7E-44 362.2 26.3 308 126-473 7-335 (470)
50 COG1204 Superfamily II helicas 100.0 1.3E-38 2.9E-43 367.8 30.1 419 131-564 31-527 (766)
51 KOG0334 RNA helicase [RNA proc 100.0 3.5E-39 7.6E-44 364.2 19.9 342 97-471 354-720 (997)
52 PRK11057 ATP-dependent DNA hel 100.0 3.1E-38 6.6E-43 364.2 27.6 308 126-473 21-345 (607)
53 KOG0350 DEAD-box ATP-dependent 100.0 2.1E-37 4.5E-42 322.0 22.3 321 123-473 152-542 (620)
54 KOG0344 ATP-dependent RNA heli 100.0 1.5E-37 3.2E-42 331.3 19.7 346 97-473 121-497 (593)
55 PRK13767 ATP-dependent helicas 100.0 1.8E-36 3.8E-41 361.3 30.3 325 118-467 20-396 (876)
56 KOG0327 Translation initiation 100.0 3.3E-37 7.2E-42 313.4 19.7 336 102-473 20-372 (397)
57 TIGR01389 recQ ATP-dependent D 100.0 7.7E-37 1.7E-41 353.7 23.8 307 126-473 9-333 (591)
58 KOG4284 DEAD box protein [Tran 100.0 7.6E-37 1.6E-41 325.0 18.9 345 100-473 17-381 (980)
59 KOG0952 DNA/RNA helicase MER3/ 100.0 9.7E-36 2.1E-40 332.8 24.7 473 132-618 111-683 (1230)
60 TIGR00580 mfd transcription-re 100.0 7.2E-35 1.6E-39 343.5 29.5 311 117-471 438-770 (926)
61 TIGR02621 cas3_GSU0051 CRISPR- 100.0 7.1E-35 1.5E-39 333.7 26.5 342 127-508 13-428 (844)
62 KOG0337 ATP-dependent RNA heli 100.0 1.1E-35 2.3E-40 303.5 15.1 333 107-473 20-370 (529)
63 COG1201 Lhr Lhr-like helicases 100.0 4.6E-34 1E-38 325.3 27.6 379 115-528 8-438 (814)
64 PRK10689 transcription-repair 100.0 4.8E-34 1E-38 343.5 25.6 303 128-471 597-919 (1147)
65 PRK10917 ATP-dependent DNA hel 100.0 2.5E-33 5.4E-38 326.8 29.6 310 118-469 249-587 (681)
66 PRK09751 putative ATP-dependen 100.0 7E-34 1.5E-38 343.1 23.7 291 151-463 1-375 (1490)
67 TIGR00643 recG ATP-dependent D 100.0 2.3E-33 5.1E-38 325.0 26.3 298 131-469 235-564 (630)
68 COG1111 MPH1 ERCC4-like helica 100.0 3E-33 6.5E-38 294.1 24.0 313 133-472 17-482 (542)
69 COG0514 RecQ Superfamily II DN 100.0 1.1E-32 2.5E-37 303.4 23.2 306 131-473 17-339 (590)
70 TIGR01587 cas3_core CRISPR-ass 100.0 9.1E-33 2E-37 301.7 22.0 290 148-472 1-337 (358)
71 KOG0354 DEAD-box like helicase 100.0 4.4E-31 9.5E-36 293.6 24.2 316 128-470 59-528 (746)
72 PHA02558 uvsW UvsW helicase; P 100.0 1.6E-30 3.5E-35 294.0 26.3 295 131-463 114-443 (501)
73 TIGR03158 cas3_cyano CRISPR-as 100.0 2.7E-30 5.8E-35 279.7 25.7 285 135-457 1-357 (357)
74 KOG0951 RNA helicase BRR2, DEA 100.0 1.5E-30 3.3E-35 294.2 21.8 439 130-579 308-848 (1674)
75 PRK09401 reverse gyrase; Revie 100.0 2.3E-30 5.1E-35 312.4 23.5 290 129-457 79-429 (1176)
76 COG1205 Distinct helicase fami 100.0 1.5E-29 3.3E-34 296.7 24.2 329 120-471 60-422 (851)
77 PRK13766 Hef nuclease; Provisi 100.0 3.1E-29 6.8E-34 300.1 25.8 314 130-473 14-481 (773)
78 KOG0948 Nuclear exosomal RNA h 100.0 9.1E-30 2E-34 275.4 13.3 327 127-471 125-539 (1041)
79 PRK12898 secA preprotein trans 100.0 2.7E-28 5.9E-33 274.2 24.6 314 121-472 94-587 (656)
80 COG4581 Superfamily II RNA hel 100.0 5.2E-28 1.1E-32 279.3 23.6 327 128-471 116-537 (1041)
81 PRK14701 reverse gyrase; Provi 100.0 4.5E-28 9.9E-33 298.3 23.7 308 126-466 76-451 (1638)
82 TIGR03714 secA2 accessory Sec 100.0 3.3E-27 7.2E-32 268.3 27.7 309 127-473 64-539 (762)
83 PRK09200 preprotein translocas 100.0 2E-27 4.4E-32 272.7 25.8 312 122-473 70-543 (790)
84 TIGR00603 rad25 DNA repair hel 100.0 2E-27 4.4E-32 270.2 24.7 301 130-474 254-610 (732)
85 KOG0947 Cytoplasmic exosomal R 100.0 6.4E-28 1.4E-32 267.3 19.2 322 127-471 293-723 (1248)
86 KOG0329 ATP-dependent RNA heli 100.0 6.1E-29 1.3E-33 238.2 9.4 299 109-474 43-358 (387)
87 KOG0351 ATP-dependent DNA heli 100.0 1.3E-27 2.7E-32 278.2 20.5 320 119-473 252-594 (941)
88 TIGR00963 secA preprotein tran 100.0 1.2E-26 2.5E-31 262.2 25.4 310 122-473 48-519 (745)
89 TIGR01054 rgy reverse gyrase. 99.9 8.4E-27 1.8E-31 282.1 24.5 275 127-428 75-411 (1171)
90 KOG0352 ATP-dependent DNA heli 99.9 2.2E-27 4.8E-32 242.6 13.9 306 133-473 22-364 (641)
91 KOG0349 Putative DEAD-box RNA 99.9 1.4E-27 3E-32 244.0 10.9 268 177-469 288-613 (725)
92 PRK05580 primosome assembly pr 99.9 5.4E-26 1.2E-30 264.2 23.7 313 129-466 142-544 (679)
93 PRK09694 helicase Cas3; Provis 99.9 1.6E-25 3.5E-30 261.7 25.4 299 130-460 286-663 (878)
94 TIGR00595 priA primosomal prot 99.9 1.8E-25 3.9E-30 250.9 18.1 292 150-465 1-375 (505)
95 COG4098 comFA Superfamily II D 99.9 2.6E-24 5.6E-29 215.5 23.3 297 132-467 98-412 (441)
96 COG1061 SSL2 DNA or RNA helica 99.9 4E-24 8.8E-29 237.2 24.9 289 128-460 33-377 (442)
97 KOG0353 ATP-dependent DNA heli 99.9 4.9E-24 1.1E-28 214.8 20.2 306 132-471 95-467 (695)
98 PRK11448 hsdR type I restricti 99.9 1.5E-23 3.1E-28 252.3 28.0 315 130-469 412-813 (1123)
99 COG1200 RecG RecG-like helicas 99.9 1.8E-23 3.9E-28 229.9 22.2 314 118-472 250-592 (677)
100 KOG0950 DNA polymerase theta/e 99.9 1.2E-23 2.5E-28 235.8 18.4 339 116-473 208-613 (1008)
101 COG1197 Mfd Transcription-repa 99.9 1.3E-22 2.9E-27 234.7 24.6 304 127-472 590-914 (1139)
102 PRK04914 ATP-dependent helicas 99.9 1.7E-21 3.8E-26 229.4 26.7 301 130-461 151-592 (956)
103 PRK13104 secA preprotein trans 99.9 1.7E-21 3.7E-26 223.3 23.4 140 321-473 429-589 (896)
104 PRK12904 preprotein translocas 99.9 8.7E-21 1.9E-25 217.5 24.4 323 128-473 79-575 (830)
105 PRK12906 secA preprotein trans 99.9 7E-21 1.5E-25 217.4 23.0 108 337-473 439-555 (796)
106 COG1203 CRISPR-associated heli 99.9 1.6E-20 3.4E-25 220.7 20.4 308 131-470 195-549 (733)
107 PF07717 OB_NTP_bind: Oligonuc 99.8 3.7E-21 8E-26 173.5 7.6 101 647-747 1-114 (114)
108 KOG0949 Predicted helicase, DE 99.8 1.8E-19 4E-24 200.9 20.1 160 130-295 511-682 (1330)
109 PRK12899 secA preprotein trans 99.8 7E-19 1.5E-23 201.5 24.0 136 114-253 68-225 (970)
110 cd00268 DEADc DEAD-box helicas 99.8 3.3E-19 7.1E-24 178.6 16.8 175 110-286 1-185 (203)
111 PRK13107 preprotein translocas 99.8 7.8E-19 1.7E-23 200.9 20.7 139 321-473 434-593 (908)
112 COG1198 PriA Primosomal protei 99.8 1.6E-17 3.6E-22 189.2 18.5 315 129-465 196-597 (730)
113 PF00270 DEAD: DEAD/DEAH box h 99.7 3.6E-18 7.9E-23 165.6 9.7 156 133-291 1-167 (169)
114 COG4096 HsdR Type I site-speci 99.7 1.2E-16 2.7E-21 178.3 22.3 295 133-461 167-527 (875)
115 TIGR00348 hsdR type I site-spe 99.7 1E-16 2.2E-21 186.7 21.3 305 129-463 237-639 (667)
116 KOG0953 Mitochondrial RNA heli 99.7 4.5E-17 9.8E-22 172.9 15.6 280 145-471 190-477 (700)
117 PF04408 HA2: Helicase associa 99.7 1.7E-17 3.6E-22 145.8 7.6 91 521-613 1-102 (102)
118 COG1110 Reverse gyrase [DNA re 99.7 1.6E-15 3.4E-20 171.9 22.8 271 131-427 82-418 (1187)
119 KOG0921 Dosage compensation co 99.7 3.1E-18 6.6E-23 189.5 -2.2 507 126-650 401-962 (1282)
120 PLN03142 Probable chromatin-re 99.7 3E-15 6.6E-20 177.5 22.1 311 131-474 169-602 (1033)
121 TIGR00631 uvrb excinuclease AB 99.7 6.4E-16 1.4E-20 178.0 15.4 114 337-472 441-554 (655)
122 COG0556 UvrB Helicase subunit 99.7 2.2E-14 4.7E-19 152.5 24.5 168 276-469 387-555 (663)
123 KOG4150 Predicted ATP-dependen 99.6 1.4E-15 3.1E-20 161.1 14.0 312 128-461 283-629 (1034)
124 TIGR01407 dinG_rel DnaQ family 99.6 5.6E-14 1.2E-18 169.0 26.2 180 276-467 596-811 (850)
125 smart00847 HA2 Helicase associ 99.6 1.2E-15 2.6E-20 131.9 7.3 91 521-613 1-92 (92)
126 PRK12326 preprotein translocas 99.6 1.4E-13 3.1E-18 154.5 23.9 122 321-473 412-549 (764)
127 PRK12900 secA preprotein trans 99.6 1.2E-14 2.6E-19 167.4 14.8 195 245-473 481-713 (1025)
128 PRK05298 excinuclease ABC subu 99.6 1.4E-14 3.1E-19 168.2 15.5 112 337-470 445-556 (652)
129 cd00079 HELICc Helicase superf 99.6 1.2E-14 2.6E-19 134.3 11.4 104 337-467 27-131 (131)
130 TIGR02562 cas3_yersinia CRISPR 99.5 4.3E-13 9.3E-18 155.5 23.1 309 126-461 403-881 (1110)
131 PF00271 Helicase_C: Helicase 99.5 5.6E-15 1.2E-19 123.5 5.6 73 370-460 6-78 (78)
132 smart00487 DEXDc DEAD-like hel 99.5 1.2E-13 2.6E-18 136.8 16.1 166 130-296 7-183 (201)
133 KOG1123 RNA polymerase II tran 99.5 4.9E-14 1.1E-18 148.0 13.4 298 131-473 302-655 (776)
134 PRK13103 secA preprotein trans 99.5 3.9E-13 8.5E-18 154.7 19.6 121 129-253 78-212 (913)
135 cd00046 DEXDc DEAD-like helica 99.5 1.6E-13 3.5E-18 127.8 12.6 136 147-285 1-144 (144)
136 KOG0951 RNA helicase BRR2, DEA 99.5 6.9E-13 1.5E-17 152.4 15.1 331 133-483 1145-1508(1674)
137 PF07652 Flavi_DEAD: Flaviviru 99.4 2.3E-13 5.1E-18 123.3 8.3 133 145-286 3-137 (148)
138 PRK07246 bifunctional ATP-depe 99.4 1.4E-11 3E-16 146.5 25.3 132 319-468 630-781 (820)
139 PRK12903 secA preprotein trans 99.4 9.4E-12 2E-16 141.9 21.9 120 321-472 411-540 (925)
140 CHL00122 secA preprotein trans 99.4 1.2E-11 2.6E-16 142.0 19.8 121 130-253 73-206 (870)
141 PF04851 ResIII: Type III rest 99.4 9.4E-13 2E-17 129.2 8.8 145 131-285 3-182 (184)
142 smart00490 HELICc helicase sup 99.4 8E-13 1.7E-17 111.1 6.2 72 371-460 11-82 (82)
143 KOG0385 Chromatin remodeling c 99.3 1E-10 2.2E-15 129.3 19.0 313 131-474 167-602 (971)
144 PRK12902 secA preprotein trans 99.3 2.9E-10 6.3E-15 130.5 20.5 124 127-253 79-215 (939)
145 PRK08074 bifunctional ATP-depe 99.3 9.9E-10 2.1E-14 133.1 26.2 137 320-467 735-890 (928)
146 TIGR03117 cas_csf4 CRISPR-asso 99.2 3.1E-09 6.8E-14 121.1 28.0 136 321-469 454-615 (636)
147 COG4889 Predicted helicase [Ge 99.2 1.9E-11 4.1E-16 136.0 9.1 320 121-465 152-578 (1518)
148 PRK14873 primosome assembly pr 99.2 1.4E-10 3E-15 133.8 16.2 136 150-292 164-310 (665)
149 PF02399 Herpes_ori_bp: Origin 99.2 2.6E-09 5.7E-14 121.6 22.2 292 144-472 47-389 (824)
150 KOG0387 Transcription-coupled 99.1 1.3E-08 2.8E-13 113.7 21.6 132 338-495 546-679 (923)
151 KOG0390 DNA repair protein, SN 99.1 1.1E-08 2.4E-13 116.9 21.3 86 371-474 619-710 (776)
152 PRK11747 dinG ATP-dependent DN 99.0 2.5E-07 5.3E-12 109.0 28.9 136 319-468 517-672 (697)
153 KOG0384 Chromodomain-helicase 98.9 2.8E-08 6.1E-13 115.6 16.7 136 337-499 698-836 (1373)
154 KOG1000 Chromatin remodeling p 98.9 2.6E-07 5.7E-12 98.1 20.6 270 132-424 199-571 (689)
155 COG1199 DinG Rad3-related DNA 98.8 8.3E-07 1.8E-11 105.0 23.6 137 320-468 462-615 (654)
156 KOG0392 SNF2 family DNA-depend 98.7 2.7E-07 5.8E-12 107.3 15.7 111 339-473 1341-1456(1549)
157 PRK12901 secA preprotein trans 98.6 4.6E-07 1E-11 105.7 15.6 194 245-472 511-742 (1112)
158 PF06862 DUF1253: Protein of u 98.6 5.5E-06 1.2E-10 90.3 21.2 227 220-473 131-417 (442)
159 COG0610 Type I site-specific r 98.4 2.9E-06 6.2E-11 102.8 15.9 131 147-285 274-413 (962)
160 KOG1002 Nucleotide excision re 98.4 2E-05 4.4E-10 84.0 18.6 86 370-473 661-751 (791)
161 KOG0952 DNA/RNA helicase MER3/ 98.3 1.3E-07 2.7E-12 108.8 -0.4 225 133-358 929-1173(1230)
162 KOG0389 SNF2 family DNA-depend 98.3 9E-06 1.9E-10 91.4 13.5 113 338-474 777-891 (941)
163 COG0653 SecA Preprotein transl 98.3 1.9E-05 4.1E-10 91.3 16.6 125 323-471 416-545 (822)
164 PF00176 SNF2_N: SNF2 family N 98.2 4E-06 8.7E-11 89.0 9.8 131 145-285 24-172 (299)
165 PF13604 AAA_30: AAA domain; P 98.2 1.9E-06 4.1E-11 85.4 5.0 123 132-285 2-131 (196)
166 PF00448 SRP54: SRP54-type pro 98.0 9.8E-06 2.1E-10 80.1 7.3 125 147-289 2-129 (196)
167 KOG4439 RNA polymerase II tran 98.0 0.00017 3.6E-09 80.4 15.4 88 371-473 770-860 (901)
168 PF13401 AAA_22: AAA domain; P 98.0 2.9E-06 6.2E-11 78.2 1.5 119 144-284 2-125 (131)
169 PRK12723 flagellar biosynthesi 98.0 5.4E-05 1.2E-09 82.3 11.5 126 146-294 174-306 (388)
170 TIGR02768 TraA_Ti Ti-type conj 98.0 0.0012 2.5E-08 78.7 23.7 122 130-282 351-474 (744)
171 COG1419 FlhF Flagellar GTP-bin 97.9 4.8E-05 1E-09 81.3 10.4 128 145-295 202-333 (407)
172 PRK11889 flhF flagellar biosyn 97.9 6.2E-05 1.3E-09 80.5 10.7 128 147-295 242-375 (436)
173 PF13245 AAA_19: Part of AAA d 97.9 1.4E-05 3.1E-10 65.7 4.2 54 142-195 6-62 (76)
174 PRK10875 recD exonuclease V su 97.9 6.6E-05 1.4E-09 86.5 11.1 138 133-284 154-301 (615)
175 KOG2340 Uncharacterized conser 97.9 9E-05 1.9E-09 80.0 11.1 318 126-473 211-670 (698)
176 TIGR00596 rad1 DNA repair prot 97.9 0.00022 4.9E-09 84.3 15.5 66 220-286 7-73 (814)
177 TIGR01447 recD exodeoxyribonuc 97.9 5.3E-05 1.2E-09 87.1 10.1 135 134-282 148-293 (586)
178 PRK13889 conjugal transfer rel 97.8 0.0014 3E-08 79.2 21.6 125 129-284 344-470 (988)
179 PRK10536 hypothetical protein; 97.8 4E-05 8.6E-10 77.6 7.2 59 128-186 56-115 (262)
180 PF02562 PhoH: PhoH-like prote 97.8 6.2E-05 1.3E-09 74.2 8.3 57 130-186 3-60 (205)
181 TIGR01448 recD_rel helicase, p 97.8 8.5E-05 1.8E-09 87.9 10.9 125 128-284 320-452 (720)
182 PRK14722 flhF flagellar biosyn 97.8 0.0001 2.2E-09 79.5 9.8 123 144-289 135-261 (374)
183 PF09848 DUF2075: Uncharacteri 97.7 5.8E-05 1.3E-09 82.2 7.6 94 147-258 2-97 (352)
184 KOG1803 DNA helicase [Replicat 97.7 6.5E-05 1.4E-09 82.8 7.7 66 130-196 184-250 (649)
185 PF13086 AAA_11: AAA domain; P 97.7 4.8E-05 1E-09 77.4 5.0 66 132-197 2-75 (236)
186 PRK05703 flhF flagellar biosyn 97.6 0.00033 7.3E-09 77.6 11.6 125 145-292 220-349 (424)
187 PF05970 PIF1: PIF1-like helic 97.6 0.00016 3.4E-09 79.0 8.0 121 132-273 2-130 (364)
188 PF13872 AAA_34: P-loop contai 97.6 0.0006 1.3E-08 70.4 11.6 138 146-285 62-220 (303)
189 PRK14974 cell division protein 97.6 0.00028 6.1E-09 75.3 9.4 122 146-286 140-265 (336)
190 cd00009 AAA The AAA+ (ATPases 97.5 0.0006 1.3E-08 63.3 10.4 46 138-184 9-56 (151)
191 PRK13826 Dtr system oriT relax 97.5 0.0039 8.4E-08 75.9 19.2 125 129-284 379-505 (1102)
192 PRK12724 flagellar biosynthesi 97.5 0.00057 1.2E-08 74.3 11.0 126 146-295 223-357 (432)
193 PRK06526 transposase; Provisio 97.5 0.0002 4.4E-09 73.7 7.0 38 143-181 95-132 (254)
194 PRK12726 flagellar biosynthesi 97.5 0.00044 9.6E-09 73.9 9.2 130 144-294 204-336 (407)
195 PRK15483 type III restriction- 97.5 0.00044 9.5E-09 82.1 10.1 46 397-460 501-546 (986)
196 PRK08181 transposase; Validate 97.4 0.001 2.2E-08 68.9 11.1 117 143-296 103-219 (269)
197 TIGR02760 TraI_TIGR conjugativ 97.4 0.008 1.7E-07 78.5 21.4 247 129-396 427-685 (1960)
198 KOG0386 Chromatin remodeling c 97.4 0.00018 3.9E-09 83.2 5.0 110 338-474 726-841 (1157)
199 smart00488 DEXDc2 DEAD-like he 97.4 0.00033 7.2E-09 73.8 6.7 70 128-197 5-83 (289)
200 smart00489 DEXDc3 DEAD-like he 97.4 0.00033 7.2E-09 73.8 6.7 70 128-197 5-83 (289)
201 PF07517 SecA_DEAD: SecA DEAD- 97.3 0.00036 7.9E-09 71.7 6.1 123 126-253 73-207 (266)
202 PRK12727 flagellar biosynthesi 97.3 0.0026 5.7E-08 71.0 12.5 126 143-291 347-475 (559)
203 PRK04296 thymidine kinase; Pro 97.2 0.00041 9E-09 68.4 4.9 109 146-282 2-113 (190)
204 KOG1802 RNA helicase nonsense 97.2 0.00045 9.8E-09 76.6 5.5 72 132-204 411-482 (935)
205 PRK14723 flhF flagellar biosyn 97.2 0.0021 4.6E-08 75.0 11.2 124 145-291 184-311 (767)
206 TIGR00604 rad3 DNA repair heli 97.2 0.0034 7.4E-08 74.8 13.2 181 276-463 442-665 (705)
207 smart00382 AAA ATPases associa 97.1 0.00057 1.2E-08 62.9 5.1 40 146-186 2-41 (148)
208 PRK14721 flhF flagellar biosyn 97.1 0.0027 5.8E-08 69.8 10.5 126 144-292 189-318 (420)
209 PF00580 UvrD-helicase: UvrD/R 97.0 0.0006 1.3E-08 72.8 4.9 67 132-200 1-70 (315)
210 TIGR00376 DNA helicase, putati 97.0 0.00092 2E-08 78.0 6.5 67 130-197 156-223 (637)
211 PF12340 DUF3638: Protein of u 97.0 0.0034 7.4E-08 62.6 9.4 127 124-253 16-182 (229)
212 PRK07952 DNA replication prote 97.0 0.0059 1.3E-07 62.4 10.9 114 147-295 100-214 (244)
213 PRK06731 flhF flagellar biosyn 97.0 0.005 1.1E-07 63.8 10.4 123 145-288 74-199 (270)
214 KOG0391 SNF2 family DNA-depend 96.9 0.0042 9E-08 73.1 10.3 116 336-475 1274-1391(1958)
215 PRK10416 signal recognition pa 96.9 0.006 1.3E-07 65.0 10.6 124 145-287 113-246 (318)
216 PRK09112 DNA polymerase III su 96.9 0.0068 1.5E-07 65.6 10.9 50 231-282 129-178 (351)
217 PRK08727 hypothetical protein; 96.9 0.0037 8.1E-08 63.8 8.5 34 147-181 42-75 (233)
218 PF05729 NACHT: NACHT domain 96.9 0.0049 1.1E-07 58.8 8.9 58 246-303 84-148 (166)
219 PRK06995 flhF flagellar biosyn 96.8 0.0073 1.6E-07 67.5 10.5 124 145-291 255-382 (484)
220 PF13307 Helicase_C_2: Helicas 96.7 0.0013 2.7E-08 63.5 3.7 125 337-470 8-148 (167)
221 PF13173 AAA_14: AAA domain 96.7 0.0058 1.2E-07 56.0 7.6 26 145-170 1-26 (128)
222 PRK07003 DNA polymerase III su 96.7 0.005 1.1E-07 71.3 8.5 49 232-282 108-156 (830)
223 PRK06893 DNA replication initi 96.7 0.0062 1.3E-07 62.0 8.5 25 146-170 39-63 (229)
224 TIGR00064 ftsY signal recognit 96.7 0.0054 1.2E-07 64.0 8.2 125 145-288 71-205 (272)
225 PHA03333 putative ATPase subun 96.6 0.022 4.7E-07 65.1 13.1 143 144-296 185-343 (752)
226 PRK05642 DNA replication initi 96.6 0.0066 1.4E-07 62.0 8.3 34 147-181 46-79 (234)
227 PF01695 IstB_IS21: IstB-like 96.6 0.0054 1.2E-07 59.7 7.3 117 143-297 44-161 (178)
228 PRK06835 DNA replication prote 96.6 0.012 2.6E-07 63.0 10.5 115 145-294 182-297 (329)
229 PRK14956 DNA polymerase III su 96.6 0.007 1.5E-07 67.2 8.9 44 239-286 117-160 (484)
230 PRK09183 transposase/IS protei 96.6 0.0076 1.7E-07 62.4 8.7 46 143-190 99-144 (259)
231 PRK08903 DnaA regulatory inact 96.5 0.011 2.5E-07 60.0 8.9 25 145-169 41-65 (227)
232 TIGR03499 FlhF flagellar biosy 96.4 0.0049 1.1E-07 64.8 6.0 86 145-252 193-281 (282)
233 TIGR03015 pepcterm_ATPase puta 96.4 0.0047 1E-07 64.5 5.8 25 146-170 43-67 (269)
234 PRK10867 signal recognition pa 96.4 0.0094 2E-07 65.9 8.2 122 147-285 101-225 (433)
235 TIGR03420 DnaA_homol_Hda DnaA 96.4 0.018 3.8E-07 58.4 9.5 26 145-170 37-62 (226)
236 COG1484 DnaC DNA replication p 96.3 0.018 3.9E-07 59.4 9.3 117 143-295 102-218 (254)
237 TIGR01425 SRP54_euk signal rec 96.3 0.016 3.4E-07 63.9 9.3 120 147-285 101-224 (429)
238 PRK12377 putative replication 96.3 0.029 6.4E-07 57.5 10.8 112 146-294 101-214 (248)
239 PRK14958 DNA polymerase III su 96.3 0.0064 1.4E-07 69.1 6.4 43 238-282 114-156 (509)
240 PRK05707 DNA polymerase III su 96.3 0.0063 1.4E-07 65.2 5.9 136 131-284 3-145 (328)
241 PF05127 Helicase_RecD: Helica 96.3 0.00066 1.4E-08 65.3 -1.4 116 150-285 1-123 (177)
242 TIGR00959 ffh signal recogniti 96.3 0.012 2.5E-07 65.2 8.1 122 147-285 100-224 (428)
243 PRK08116 hypothetical protein; 96.2 0.0074 1.6E-07 62.9 6.1 114 146-294 114-229 (268)
244 PRK12402 replication factor C 96.2 0.027 6E-07 60.8 10.8 29 142-170 30-60 (337)
245 PRK08084 DNA replication initi 96.2 0.013 2.8E-07 59.9 7.6 35 146-181 45-79 (235)
246 PRK08691 DNA polymerase III su 96.2 0.011 2.4E-07 68.3 7.6 43 238-282 114-156 (709)
247 PRK14949 DNA polymerase III su 96.2 0.0098 2.1E-07 70.3 7.1 46 239-288 115-160 (944)
248 PRK07994 DNA polymerase III su 96.2 0.016 3.4E-07 67.2 8.7 47 233-281 109-155 (647)
249 PRK08939 primosomal protein Dn 96.1 0.047 1E-06 58.0 11.6 112 145-294 155-269 (306)
250 PRK14960 DNA polymerase III su 96.1 0.011 2.5E-07 67.6 7.3 42 239-282 114-155 (702)
251 PRK12323 DNA polymerase III su 96.1 0.021 4.5E-07 65.4 9.2 49 233-283 114-162 (700)
252 PRK14961 DNA polymerase III su 96.1 0.012 2.6E-07 64.4 7.0 49 232-282 108-156 (363)
253 KOG0388 SNF2 family DNA-depend 96.1 0.032 6.9E-07 62.8 10.1 116 336-475 1042-1158(1185)
254 PRK09111 DNA polymerase III su 96.1 0.049 1.1E-06 63.1 12.0 50 231-282 120-169 (598)
255 PRK07471 DNA polymerase III su 96.1 0.042 9.2E-07 59.8 11.0 63 221-285 119-181 (365)
256 PRK14957 DNA polymerase III su 96.0 0.012 2.6E-07 67.0 6.9 50 231-282 107-156 (546)
257 PRK14712 conjugal transfer nic 96.0 0.024 5.1E-07 71.5 9.8 124 131-285 835-968 (1623)
258 PRK13833 conjugal transfer pro 96.0 0.0061 1.3E-07 64.8 4.1 55 133-187 130-186 (323)
259 KOG0989 Replication factor C, 96.0 0.024 5.2E-07 58.3 8.1 44 240-285 126-169 (346)
260 PRK07764 DNA polymerase III su 96.0 0.028 6.1E-07 67.3 10.1 43 238-282 115-157 (824)
261 PRK14964 DNA polymerase III su 96.0 0.052 1.1E-06 61.0 11.6 48 233-282 106-153 (491)
262 PHA02533 17 large terminase pr 96.0 0.065 1.4E-06 61.2 12.5 157 129-292 57-217 (534)
263 PRK00149 dnaA chromosomal repl 96.0 0.024 5.1E-07 64.0 8.9 44 147-191 149-193 (450)
264 PRK06921 hypothetical protein; 96.0 0.063 1.4E-06 55.8 11.4 45 145-190 116-160 (266)
265 TIGR02782 TrbB_P P-type conjug 95.9 0.01 2.2E-07 62.8 5.4 55 134-188 119-175 (299)
266 PRK14951 DNA polymerase III su 95.9 0.032 6.9E-07 64.5 9.6 49 232-282 113-161 (618)
267 PF13177 DNA_pol3_delta2: DNA 95.9 0.017 3.7E-07 55.3 6.3 54 230-285 89-142 (162)
268 PRK14952 DNA polymerase III su 95.8 0.041 8.9E-07 63.3 10.0 47 234-282 109-155 (584)
269 KOG1805 DNA replication helica 95.8 0.015 3.2E-07 67.9 6.2 65 132-197 670-735 (1100)
270 TIGR02881 spore_V_K stage V sp 95.8 0.033 7.2E-07 57.9 8.5 21 146-166 42-62 (261)
271 TIGR00604 rad3 DNA repair heli 95.8 0.012 2.6E-07 70.2 5.8 67 131-197 10-82 (705)
272 PRK00771 signal recognition pa 95.8 0.033 7.2E-07 61.8 8.8 119 146-285 95-217 (437)
273 PRK06645 DNA polymerase III su 95.8 0.093 2E-06 59.5 12.4 48 231-280 116-163 (507)
274 PRK13709 conjugal transfer nic 95.8 0.039 8.4E-07 70.6 10.3 124 130-284 966-1099(1747)
275 cd01124 KaiC KaiC is a circadi 95.8 0.009 1.9E-07 58.5 3.9 52 148-202 1-52 (187)
276 TIGR00362 DnaA chromosomal rep 95.8 0.027 5.8E-07 62.7 8.1 36 147-182 137-173 (405)
277 PRK11054 helD DNA helicase IV; 95.8 0.018 4E-07 67.7 7.0 104 129-253 194-302 (684)
278 COG0553 HepA Superfamily II DN 95.7 0.02 4.3E-07 70.4 7.6 108 340-474 713-825 (866)
279 COG1444 Predicted P-loop ATPas 95.7 0.053 1.1E-06 63.1 10.2 136 130-285 210-356 (758)
280 COG0552 FtsY Signal recognitio 95.7 0.066 1.4E-06 56.1 9.8 121 147-285 140-269 (340)
281 COG3587 Restriction endonuclea 95.6 0.028 6.1E-07 64.8 7.5 53 396-466 482-537 (985)
282 TIGR02760 TraI_TIGR conjugativ 95.6 0.034 7.4E-07 72.8 9.2 124 130-284 1018-1149(1960)
283 PRK10919 ATP-dependent DNA hel 95.6 0.015 3.4E-07 68.7 5.6 104 132-253 3-112 (672)
284 COG4962 CpaF Flp pilus assembl 95.6 0.013 2.8E-07 61.6 4.2 65 120-189 149-214 (355)
285 cd01120 RecA-like_NTPases RecA 95.5 0.015 3.4E-07 55.0 4.5 35 148-183 1-35 (165)
286 PRK13894 conjugal transfer ATP 95.5 0.011 2.3E-07 63.1 3.6 55 133-187 134-190 (319)
287 PRK14087 dnaA chromosomal repl 95.5 0.051 1.1E-06 61.0 9.1 47 147-194 142-189 (450)
288 PRK14969 DNA polymerase III su 95.5 0.13 2.8E-06 59.0 12.4 49 232-282 108-156 (527)
289 PHA02544 44 clamp loader, smal 95.5 0.1 2.2E-06 55.9 11.1 22 148-169 45-66 (316)
290 PRK14962 DNA polymerase III su 95.5 0.053 1.1E-06 61.1 9.0 23 148-170 38-60 (472)
291 COG1875 NYN ribonuclease and A 95.5 0.017 3.6E-07 60.7 4.6 62 125-186 222-287 (436)
292 cd03115 SRP The signal recogni 95.4 0.038 8.2E-07 53.5 6.7 120 148-285 2-124 (173)
293 PF05621 TniB: Bacterial TniB 95.3 0.024 5.2E-07 59.0 5.2 83 119-203 27-124 (302)
294 PF05496 RuvB_N: Holliday junc 95.3 0.012 2.6E-07 58.4 2.9 23 147-169 51-73 (233)
295 PF01637 Arch_ATPase: Archaeal 95.3 0.025 5.5E-07 57.2 5.4 32 139-170 11-44 (234)
296 PHA03368 DNA packaging termina 95.3 0.18 3.9E-06 57.7 12.2 163 116-294 227-399 (738)
297 TIGR00678 holB DNA polymerase 95.2 0.067 1.4E-06 52.6 8.0 48 232-281 85-132 (188)
298 TIGR01075 uvrD DNA helicase II 95.2 0.035 7.6E-07 66.4 7.2 103 132-253 5-113 (715)
299 PRK11773 uvrD DNA-dependent he 95.2 0.039 8.5E-07 66.0 7.5 103 132-253 10-118 (721)
300 PRK13851 type IV secretion sys 95.2 0.014 3.1E-07 62.6 3.5 50 137-188 152-202 (344)
301 PRK05896 DNA polymerase III su 95.2 0.046 1E-06 62.6 7.6 50 231-282 107-156 (605)
302 PRK14950 DNA polymerase III su 95.2 0.15 3.3E-06 59.3 12.2 47 233-281 110-156 (585)
303 PRK12900 secA preprotein trans 95.1 0.017 3.7E-07 68.6 3.9 116 133-253 140-268 (1025)
304 PF01443 Viral_helicase1: Vira 95.1 0.017 3.8E-07 58.7 3.6 22 149-170 1-22 (234)
305 PRK06067 flagellar accessory p 95.1 0.022 4.9E-07 58.1 4.4 56 145-203 24-79 (234)
306 PLN03025 replication factor C 95.1 0.053 1.2E-06 58.2 7.5 24 147-170 35-58 (319)
307 PRK14963 DNA polymerase III su 95.1 0.074 1.6E-06 60.4 8.8 45 235-281 108-152 (504)
308 cd01130 VirB11-like_ATPase Typ 95.1 0.024 5.2E-07 55.6 4.4 36 133-168 11-47 (186)
309 PRK14086 dnaA chromosomal repl 95.1 0.076 1.7E-06 60.9 8.8 45 147-192 315-360 (617)
310 CHL00181 cbbX CbbX; Provisiona 95.0 0.039 8.5E-07 58.0 6.0 21 146-166 59-79 (287)
311 PRK14948 DNA polymerase III su 95.0 0.066 1.4E-06 62.4 8.1 46 233-280 111-156 (620)
312 cd00267 ABC_ATPase ABC (ATP-bi 95.0 0.031 6.8E-07 53.1 4.6 116 143-283 22-138 (157)
313 PRK08769 DNA polymerase III su 95.0 0.13 2.8E-06 54.8 9.6 54 230-285 100-153 (319)
314 KOG2373 Predicted mitochondria 94.9 0.0084 1.8E-07 62.1 0.6 34 137-170 264-297 (514)
315 PRK14088 dnaA chromosomal repl 94.9 0.11 2.4E-06 58.2 9.5 37 147-183 131-168 (440)
316 PRK14965 DNA polymerase III su 94.9 0.094 2E-06 60.8 9.1 50 231-282 107-156 (576)
317 PRK06964 DNA polymerase III su 94.9 0.14 3.1E-06 55.0 9.8 61 223-285 112-172 (342)
318 PF00437 T2SE: Type II/IV secr 94.9 0.015 3.3E-07 60.7 2.4 51 135-186 115-166 (270)
319 PF00308 Bac_DnaA: Bacterial d 94.8 0.06 1.3E-06 54.3 6.5 35 147-181 35-70 (219)
320 PRK07940 DNA polymerase III su 94.8 0.088 1.9E-06 57.9 8.2 51 231-284 105-155 (394)
321 PRK14959 DNA polymerase III su 94.8 0.055 1.2E-06 62.2 6.9 48 231-280 107-154 (624)
322 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.8 0.04 8.6E-07 51.6 4.8 94 143-272 23-116 (144)
323 TIGR01074 rep ATP-dependent DN 94.8 0.061 1.3E-06 64.0 7.6 104 132-253 2-111 (664)
324 PRK12422 chromosomal replicati 94.7 0.11 2.4E-06 58.2 8.8 35 147-182 142-176 (445)
325 PRK08699 DNA polymerase III su 94.7 0.3 6.5E-06 52.4 11.7 58 223-282 93-150 (325)
326 PRK00411 cdc6 cell division co 94.7 0.053 1.2E-06 60.1 6.3 25 146-170 55-79 (394)
327 PRK14955 DNA polymerase III su 94.6 0.085 1.8E-06 58.4 7.6 47 232-280 116-162 (397)
328 PRK05563 DNA polymerase III su 94.6 0.038 8.2E-07 63.8 4.8 48 231-280 107-154 (559)
329 PRK13900 type IV secretion sys 94.6 0.027 5.8E-07 60.5 3.3 44 142-187 156-199 (332)
330 PRK06871 DNA polymerase III su 94.5 0.065 1.4E-06 57.2 6.1 53 230-284 94-146 (325)
331 PRK08533 flagellar accessory p 94.5 0.088 1.9E-06 53.6 6.8 39 143-182 21-59 (230)
332 PRK07133 DNA polymerase III su 94.5 0.18 3.9E-06 59.1 10.1 51 230-282 105-155 (725)
333 PRK08451 DNA polymerase III su 94.5 0.22 4.7E-06 56.7 10.4 43 238-282 112-154 (535)
334 PRK12901 secA preprotein trans 94.5 0.034 7.5E-07 66.2 4.2 117 134-253 170-300 (1112)
335 PRK06620 hypothetical protein; 94.5 0.15 3.3E-06 51.1 8.3 20 147-166 45-64 (214)
336 TIGR03345 VI_ClpV1 type VI sec 94.4 0.14 3E-06 62.2 9.3 120 148-294 598-727 (852)
337 PRK11823 DNA repair protein Ra 94.3 0.034 7.5E-07 62.3 3.7 87 143-253 77-166 (446)
338 PRK04195 replication factor C 94.3 0.16 3.5E-06 57.8 9.1 25 146-170 39-63 (482)
339 PRK14953 DNA polymerase III su 94.3 0.38 8.3E-06 54.5 11.9 49 230-280 106-154 (486)
340 cd03247 ABCC_cytochrome_bd The 94.2 0.089 1.9E-06 51.2 6.0 128 143-283 25-155 (178)
341 TIGR02880 cbbX_cfxQ probable R 94.2 0.061 1.3E-06 56.6 5.1 27 146-172 58-87 (284)
342 COG2804 PulE Type II secretory 94.2 0.06 1.3E-06 59.5 4.9 41 130-170 240-282 (500)
343 PF13555 AAA_29: P-loop contai 94.1 0.04 8.8E-07 43.0 2.6 23 146-168 23-45 (62)
344 PRK00440 rfc replication facto 94.1 0.25 5.3E-06 52.9 9.8 23 147-169 39-61 (319)
345 COG2805 PilT Tfp pilus assembl 94.1 0.034 7.3E-07 57.1 2.7 35 145-179 124-158 (353)
346 cd01131 PilT Pilus retraction 94.1 0.035 7.5E-07 55.1 2.7 36 147-182 2-37 (198)
347 cd03228 ABCC_MRP_Like The MRP 94.0 0.11 2.4E-06 50.1 6.2 126 143-283 25-153 (171)
348 PF03354 Terminase_1: Phage Te 94.0 0.11 2.5E-06 58.9 7.1 146 134-285 1-164 (477)
349 COG2256 MGS1 ATPase related to 94.0 0.23 5.1E-06 53.2 8.7 23 147-169 49-71 (436)
350 COG0470 HolB ATPase involved i 93.9 0.14 3E-06 54.9 7.2 51 231-283 97-147 (325)
351 TIGR02397 dnaX_nterm DNA polym 93.9 0.53 1.1E-05 51.3 11.9 49 230-280 104-152 (355)
352 COG1222 RPT1 ATP-dependent 26S 93.9 0.23 4.9E-06 52.4 8.3 55 106-163 146-202 (406)
353 cd00544 CobU Adenosylcobinamid 93.8 0.098 2.1E-06 50.4 5.2 45 149-197 2-46 (169)
354 cd03238 ABC_UvrA The excision 93.7 0.14 3.1E-06 49.7 6.1 25 143-167 18-42 (176)
355 cd01121 Sms Sms (bacterial rad 93.7 0.054 1.2E-06 59.0 3.6 87 143-253 79-168 (372)
356 cd01393 recA_like RecA is a b 93.6 0.053 1.2E-06 54.9 3.2 27 144-170 17-43 (226)
357 cd03222 ABC_RNaseL_inhibitor T 93.6 0.12 2.6E-06 50.2 5.4 97 142-272 21-117 (177)
358 COG2255 RuvB Holliday junction 93.6 0.096 2.1E-06 53.5 4.8 21 147-167 53-73 (332)
359 TIGR02928 orc1/cdc6 family rep 93.6 0.092 2E-06 57.5 5.3 22 147-168 41-62 (365)
360 PF05876 Terminase_GpA: Phage 93.6 0.19 4.1E-06 58.0 7.9 71 129-199 14-87 (557)
361 PRK07399 DNA polymerase III su 93.5 0.49 1.1E-05 50.5 10.5 59 223-284 104-162 (314)
362 PTZ00293 thymidine kinase; Pro 93.5 0.2 4.4E-06 49.7 6.9 40 145-185 3-42 (211)
363 PRK13342 recombination factor 93.5 0.18 4E-06 56.1 7.5 22 147-168 37-58 (413)
364 PRK14971 DNA polymerase III su 93.5 0.33 7.1E-06 56.7 9.8 50 232-284 110-159 (614)
365 TIGR03878 thermo_KaiC_2 KaiC d 93.5 0.067 1.5E-06 55.5 3.7 38 144-182 34-71 (259)
366 KOG2228 Origin recognition com 93.5 0.59 1.3E-05 49.0 10.3 127 145-287 48-183 (408)
367 TIGR02655 circ_KaiC circadian 93.5 0.065 1.4E-06 61.0 3.9 57 143-202 260-316 (484)
368 PRK14954 DNA polymerase III su 93.5 0.2 4.3E-06 58.2 7.8 48 233-282 117-164 (620)
369 KOG2028 ATPase related to the 93.4 0.14 2.9E-06 53.9 5.7 26 143-168 157-184 (554)
370 PRK13341 recombination factor 93.4 0.18 3.9E-06 59.8 7.5 22 147-168 53-74 (725)
371 COG1474 CDC6 Cdc6-related prot 93.4 0.18 3.9E-06 54.9 6.9 21 147-167 43-63 (366)
372 KOG0726 26S proteasome regulat 93.4 0.16 3.5E-06 51.8 6.0 55 106-163 180-236 (440)
373 KOG0391 SNF2 family DNA-depend 93.4 0.19 4.1E-06 59.9 7.3 148 132-285 616-775 (1958)
374 cd03239 ABC_SMC_head The struc 93.4 0.22 4.7E-06 48.5 6.9 43 241-284 114-157 (178)
375 TIGR02688 conserved hypothetic 93.2 0.19 4.2E-06 54.8 6.8 25 141-165 204-228 (449)
376 COG2812 DnaX DNA polymerase II 93.2 0.069 1.5E-06 60.0 3.5 50 231-282 107-156 (515)
377 PRK09087 hypothetical protein; 93.2 0.21 4.5E-06 50.6 6.7 22 146-167 44-65 (226)
378 TIGR01073 pcrA ATP-dependent D 93.2 0.19 4.1E-06 60.4 7.5 103 132-253 5-113 (726)
379 TIGR01420 pilT_fam pilus retra 93.2 0.064 1.4E-06 58.1 3.2 42 145-186 121-162 (343)
380 TIGR02788 VirB11 P-type DNA tr 93.2 0.07 1.5E-06 56.9 3.4 42 143-186 141-182 (308)
381 TIGR01547 phage_term_2 phage t 93.1 0.24 5.3E-06 54.9 7.7 132 147-286 2-141 (396)
382 PTZ00112 origin recognition co 93.1 0.34 7.4E-06 57.2 8.8 20 148-167 783-802 (1164)
383 COG3973 Superfamily I DNA and 93.1 0.12 2.7E-06 57.7 5.1 88 112-201 186-285 (747)
384 COG1110 Reverse gyrase [DNA re 93.0 0.26 5.6E-06 58.4 7.7 77 328-407 115-191 (1187)
385 PRK08058 DNA polymerase III su 93.0 0.18 3.9E-06 54.3 6.2 50 231-282 98-147 (329)
386 PRK07993 DNA polymerase III su 92.9 0.11 2.4E-06 55.8 4.5 59 223-283 88-146 (334)
387 PF14532 Sigma54_activ_2: Sigm 92.9 0.23 4.9E-06 46.1 6.0 37 133-170 8-44 (138)
388 cd03230 ABC_DR_subfamily_A Thi 92.9 0.1 2.2E-06 50.5 3.8 126 143-283 23-153 (173)
389 COG3421 Uncharacterized protei 92.9 0.44 9.5E-06 53.3 8.8 70 217-286 78-166 (812)
390 PRK10865 protein disaggregatio 92.8 0.46 1E-05 57.9 10.0 95 148-269 600-694 (857)
391 PRK09354 recA recombinase A; P 92.8 0.15 3.2E-06 54.7 5.2 43 145-188 59-101 (349)
392 PRK14970 DNA polymerase III su 92.8 0.32 7E-06 53.3 8.0 22 147-168 40-61 (367)
393 TIGR02012 tigrfam_recA protein 92.7 0.15 3.2E-06 54.3 5.0 44 143-187 52-95 (321)
394 cd01129 PulE-GspE PulE/GspE Th 92.7 0.14 3.1E-06 53.2 4.7 49 133-182 65-115 (264)
395 TIGR00631 uvrb excinuclease AB 92.6 0.2 4.4E-06 58.8 6.4 66 133-202 11-81 (655)
396 TIGR02524 dot_icm_DotB Dot/Icm 92.6 0.11 2.3E-06 56.5 3.7 25 145-169 133-157 (358)
397 cd03229 ABC_Class3 This class 92.5 0.048 1E-06 53.1 0.9 129 143-282 23-158 (178)
398 cd03216 ABC_Carb_Monos_I This 92.5 0.14 3.1E-06 49.0 4.1 116 143-283 23-140 (163)
399 TIGR03689 pup_AAA proteasome A 92.5 0.16 3.4E-06 57.5 5.1 24 145-168 215-238 (512)
400 cd03214 ABC_Iron-Siderophores_ 92.5 0.22 4.8E-06 48.5 5.6 126 143-284 22-157 (180)
401 COG4626 Phage terminase-like p 92.4 0.57 1.2E-05 52.5 9.1 152 127-285 57-225 (546)
402 PRK00080 ruvB Holliday junctio 92.4 0.32 6.9E-06 52.4 7.1 23 147-169 52-74 (328)
403 PRK06647 DNA polymerase III su 92.4 0.26 5.7E-06 56.8 6.8 44 235-280 111-154 (563)
404 KOG0741 AAA+-type ATPase [Post 92.3 0.38 8.2E-06 53.2 7.4 107 148-292 540-656 (744)
405 TIGR03819 heli_sec_ATPase heli 92.3 0.11 2.5E-06 55.9 3.6 53 133-187 164-217 (340)
406 TIGR02858 spore_III_AA stage I 92.3 0.6 1.3E-05 48.6 8.8 23 147-169 112-134 (270)
407 TIGR03877 thermo_KaiC_1 KaiC d 92.3 0.087 1.9E-06 53.9 2.5 56 144-202 19-74 (237)
408 PRK06305 DNA polymerase III su 92.3 0.43 9.2E-06 53.7 8.2 23 147-169 40-62 (451)
409 COG2909 MalT ATP-dependent tra 92.3 0.081 1.7E-06 61.6 2.4 33 136-168 24-59 (894)
410 TIGR00635 ruvB Holliday juncti 92.2 0.3 6.5E-06 52.0 6.6 22 147-168 31-52 (305)
411 PRK04841 transcriptional regul 92.2 0.29 6.3E-06 60.6 7.4 26 144-169 30-55 (903)
412 cd03246 ABCC_Protease_Secretio 92.2 0.11 2.3E-06 50.3 2.9 128 143-284 25-155 (173)
413 PRK06090 DNA polymerase III su 92.2 0.28 6.1E-06 52.2 6.2 53 230-284 95-147 (319)
414 PHA00729 NTP-binding motif con 92.2 0.16 3.5E-06 51.0 4.1 22 147-168 18-39 (226)
415 PRK10436 hypothetical protein; 92.0 0.18 3.9E-06 56.5 4.8 37 133-169 203-241 (462)
416 PRK05800 cobU adenosylcobinami 92.0 0.3 6.5E-06 47.1 5.6 47 147-197 2-48 (170)
417 TIGR02974 phageshock_pspF psp 91.9 0.72 1.6E-05 49.6 9.1 36 134-170 10-45 (329)
418 PRK10917 ATP-dependent DNA hel 91.9 0.5 1.1E-05 56.2 8.5 79 337-420 309-388 (681)
419 PF00931 NB-ARC: NB-ARC domain 91.9 0.094 2E-06 55.2 2.3 24 146-169 19-42 (287)
420 PF03237 Terminase_6: Terminas 91.8 0.74 1.6E-05 50.1 9.5 127 150-285 1-137 (384)
421 COG0541 Ffh Signal recognition 91.8 0.7 1.5E-05 50.3 8.6 131 147-295 101-236 (451)
422 cd03223 ABCD_peroxisomal_ALDP 91.8 0.17 3.6E-06 48.7 3.7 26 143-168 24-49 (166)
423 TIGR02868 CydC thiol reductant 91.7 0.14 3E-06 59.2 3.6 42 240-282 485-526 (529)
424 PRK03992 proteasome-activating 91.7 0.23 4.9E-06 54.8 5.1 24 146-169 165-188 (389)
425 TIGR01243 CDC48 AAA family ATP 91.7 0.33 7.3E-06 58.3 6.9 61 107-170 449-511 (733)
426 KOG2543 Origin recognition com 91.7 0.71 1.5E-05 49.2 8.3 142 129-288 7-161 (438)
427 COG1126 GlnQ ABC-type polar am 91.7 0.08 1.7E-06 52.0 1.3 24 143-166 25-48 (240)
428 TIGR02785 addA_Gpos recombinat 91.6 0.23 5E-06 63.0 5.7 67 132-200 2-70 (1232)
429 KOG0730 AAA+-type ATPase [Post 91.6 0.86 1.9E-05 51.9 9.4 66 103-170 426-492 (693)
430 PF12846 AAA_10: AAA-like doma 91.3 0.13 2.8E-06 54.3 2.6 43 146-189 1-43 (304)
431 TIGR02525 plasmid_TraJ plasmid 91.3 0.16 3.4E-06 55.4 3.2 39 144-182 147-186 (372)
432 COG0542 clpA ATP-binding subun 91.2 0.71 1.5E-05 54.4 8.6 120 147-293 522-651 (786)
433 COG1435 Tdk Thymidine kinase [ 91.1 0.57 1.2E-05 45.5 6.4 89 146-253 4-92 (201)
434 cd03289 ABCC_CFTR2 The CFTR su 91.0 0.9 1.9E-05 47.5 8.5 44 240-284 153-196 (275)
435 PHA03372 DNA packaging termina 91.0 2.3 5E-05 48.4 12.0 159 117-288 176-340 (668)
436 PRK05564 DNA polymerase III su 91.0 0.69 1.5E-05 49.5 7.9 46 235-282 85-130 (313)
437 PF13207 AAA_17: AAA domain; P 91.0 0.18 3.8E-06 45.4 2.8 22 148-169 1-22 (121)
438 COG0593 DnaA ATPase involved i 90.9 1.1 2.4E-05 49.0 9.3 24 146-169 113-136 (408)
439 COG4987 CydC ABC-type transpor 90.9 0.53 1.1E-05 52.4 6.8 44 241-285 490-533 (573)
440 TIGR01243 CDC48 AAA family ATP 90.9 0.23 5E-06 59.7 4.4 59 108-169 175-235 (733)
441 TIGR02640 gas_vesic_GvpN gas v 90.8 0.27 5.8E-06 51.1 4.3 35 134-168 9-43 (262)
442 KOG0991 Replication factor C, 90.8 0.3 6.5E-06 48.4 4.2 22 147-168 49-70 (333)
443 TIGR02538 type_IV_pilB type IV 90.7 0.28 6E-06 56.9 4.8 38 132-169 300-339 (564)
444 PF02367 UPF0079: Uncharacteri 90.7 0.22 4.8E-06 45.0 3.1 46 138-187 7-52 (123)
445 COG4604 CeuD ABC-type enteroch 90.7 0.86 1.9E-05 44.3 7.1 50 143-192 24-78 (252)
446 PRK05973 replicative DNA helic 90.7 0.17 3.6E-06 51.5 2.6 60 136-197 54-113 (237)
447 COG0466 Lon ATP-dependent Lon 90.7 1.1 2.5E-05 51.5 9.3 109 130-269 326-445 (782)
448 TIGR02533 type_II_gspE general 90.6 0.26 5.6E-06 55.9 4.3 38 132-169 226-265 (486)
449 PRK05580 primosome assembly pr 90.6 0.48 1E-05 56.2 6.7 74 338-420 190-263 (679)
450 PRK11034 clpA ATP-dependent Cl 90.5 0.42 9E-06 57.0 6.1 20 148-167 490-509 (758)
451 cd03213 ABCG_EPDR ABCG transpo 90.5 0.23 5.1E-06 49.0 3.4 43 240-283 126-169 (194)
452 PLN03187 meiotic recombination 90.5 0.25 5.3E-06 53.2 3.8 38 145-182 125-167 (344)
453 KOG1015 Transcription regulato 90.4 1.5 3.2E-05 51.7 9.9 123 337-474 1141-1280(1567)
454 COG0630 VirB11 Type IV secreto 90.3 0.23 5.1E-06 52.8 3.4 46 139-186 136-181 (312)
455 TIGR02639 ClpA ATP-dependent C 90.3 0.57 1.2E-05 56.3 7.1 20 148-167 486-505 (731)
456 COG3598 RepA RecA-family ATPas 90.3 0.46 1E-05 49.4 5.3 71 134-204 76-158 (402)
457 COG1136 SalX ABC-type antimicr 90.3 0.15 3.2E-06 51.1 1.8 25 143-167 28-52 (226)
458 PF10443 RNA12: RNA12 protein; 90.2 0.58 1.3E-05 51.1 6.3 54 244-297 149-206 (431)
459 COG5008 PilU Tfp pilus assembl 90.2 0.2 4.4E-06 50.4 2.6 39 143-181 124-162 (375)
460 PF13671 AAA_33: AAA domain; P 90.1 0.21 4.7E-06 46.2 2.7 23 148-170 1-23 (143)
461 TIGR02238 recomb_DMC1 meiotic 90.1 0.3 6.6E-06 52.0 4.1 38 145-182 95-137 (313)
462 cd01127 TrwB Bacterial conjuga 90.1 0.1 2.2E-06 58.1 0.4 46 143-189 39-84 (410)
463 cd03215 ABC_Carb_Monos_II This 90.0 0.39 8.5E-06 46.8 4.5 57 226-283 105-162 (182)
464 TIGR03346 chaperone_ClpB ATP-d 90.0 1.6 3.5E-05 53.3 10.7 119 147-292 596-724 (852)
465 CHL00095 clpC Clp protease ATP 90.0 0.53 1.1E-05 57.3 6.5 36 229-270 601-636 (821)
466 PRK04301 radA DNA repair and r 90.0 0.33 7.1E-06 52.1 4.2 27 144-170 100-126 (317)
467 COG1120 FepC ABC-type cobalami 90.0 0.17 3.6E-06 51.8 1.9 50 143-192 25-79 (258)
468 COG0513 SrmB Superfamily II DN 89.9 1.4 2.9E-05 50.6 9.4 72 341-420 102-179 (513)
469 CHL00176 ftsH cell division pr 89.9 0.8 1.7E-05 53.6 7.6 25 146-170 216-240 (638)
470 TIGR00150 HI0065_YjeE ATPase, 89.8 0.33 7.1E-06 44.6 3.5 45 140-188 16-60 (133)
471 COG1074 RecB ATP-dependent exo 89.7 0.36 7.8E-06 60.7 4.9 58 143-200 13-74 (1139)
472 cd03227 ABC_Class2 ABC-type Cl 89.7 1.2 2.6E-05 42.4 7.6 44 242-288 98-142 (162)
473 COG1131 CcmA ABC-type multidru 89.6 0.29 6.2E-06 51.8 3.4 43 240-283 151-194 (293)
474 KOG0733 Nuclear AAA ATPase (VC 89.6 1.1 2.3E-05 50.6 7.8 153 86-284 486-654 (802)
475 KOG2004 Mitochondrial ATP-depe 89.6 1.8 4E-05 49.8 9.7 109 130-269 414-533 (906)
476 KOG0058 Peptide exporter, ABC 89.6 0.39 8.5E-06 55.3 4.6 26 143-168 491-516 (716)
477 TIGR00643 recG ATP-dependent D 89.5 1.1 2.3E-05 53.0 8.4 79 337-420 283-362 (630)
478 COG1219 ClpX ATP-dependent pro 89.5 0.17 3.6E-06 52.5 1.4 19 145-163 96-114 (408)
479 TIGR00763 lon ATP-dependent pr 89.4 2.1 4.6E-05 51.7 11.0 25 145-169 346-370 (775)
480 COG3267 ExeA Type II secretory 89.4 0.8 1.7E-05 46.3 6.1 23 142-164 46-69 (269)
481 cd00984 DnaB_C DnaB helicase C 89.3 0.19 4.1E-06 51.5 1.7 40 143-182 10-49 (242)
482 PF12775 AAA_7: P-loop contain 89.3 0.32 6.9E-06 50.8 3.5 27 143-169 30-56 (272)
483 PF13871 Helicase_C_4: Helicas 89.3 0.42 9.1E-06 49.5 4.2 61 390-460 54-114 (278)
484 TIGR03263 guanyl_kin guanylate 89.3 0.25 5.3E-06 48.0 2.4 23 146-168 1-23 (180)
485 PF06745 KaiC: KaiC; InterPro 89.2 0.18 3.9E-06 51.1 1.5 55 145-201 18-72 (226)
486 KOG0652 26S proteasome regulat 89.2 1.7 3.8E-05 43.7 8.2 55 106-162 166-221 (424)
487 PRK11034 clpA ATP-dependent Cl 89.2 1.5 3.3E-05 52.3 9.4 22 146-167 207-228 (758)
488 PRK13764 ATPase; Provisional 89.2 0.25 5.3E-06 57.0 2.7 26 144-169 255-280 (602)
489 KOG0739 AAA+-type ATPase [Post 89.1 1 2.2E-05 46.4 6.6 60 104-170 126-190 (439)
490 PRK09302 circadian clock prote 89.1 0.4 8.6E-06 55.1 4.4 57 145-203 30-86 (509)
491 PF02456 Adeno_IVa2: Adenoviru 89.1 0.21 4.5E-06 51.6 1.7 39 148-186 89-128 (369)
492 PF03969 AFG1_ATPase: AFG1-lik 89.1 3.6 7.7E-05 44.8 11.4 109 146-288 62-171 (362)
493 TIGR03375 type_I_sec_LssB type 89.1 0.83 1.8E-05 54.7 7.2 43 240-283 616-658 (694)
494 TIGR03238 dnd_assoc_3 dnd syst 89.1 0.34 7.3E-06 53.8 3.5 32 133-164 12-50 (504)
495 TIGR00595 priA primosomal prot 89.0 0.7 1.5E-05 52.8 6.2 74 338-420 25-98 (505)
496 PF00265 TK: Thymidine kinase; 89.0 0.32 7E-06 47.1 3.0 37 147-184 2-38 (176)
497 PRK14873 primosome assembly pr 88.9 1.1 2.5E-05 52.6 7.9 75 338-420 188-262 (665)
498 PF01935 DUF87: Domain of unkn 88.9 0.29 6.4E-06 49.6 2.8 41 146-186 23-63 (229)
499 PF13481 AAA_25: AAA domain; P 88.9 0.37 7.9E-06 47.3 3.4 55 144-199 30-93 (193)
500 PRK13897 type IV secretion sys 88.9 0.4 8.8E-06 55.5 4.1 50 146-201 158-209 (606)
No 1
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-159 Score=1256.17 Aligned_cols=725 Identities=75% Similarity=1.171 Sum_probs=691.0
Q ss_pred cccccCccchhhhhhHhhhcccCccccCCCCCchhHHHHHHhhhcccccccCCCCcC-CCCCccccccch--hhhhhccc
Q 048746 21 AYDEEGHVNQEKRFAVSLQRYNLDSAGDKMNPFAEQEAWEEHQMGKASLKYGSKNKN-QSNDYEYVFEDK--IDFIRDSV 97 (755)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~ 97 (755)
.|+.+|..+ .+...+|.+-+++.+.+|..+|+.|++.|...+...++.++.+ .+..|+.++++. ++|..+..
T Consensus 161 ~y~~~~~~d-----~~~~~ry~d~~~~e~~~p~~eq~~WEd~ql~~a~~~~ga~~~~~~~~~ye~vfdd~~~idF~~e~~ 235 (902)
T KOG0923|consen 161 RYDQPGELD-----KVEPQRYVDLDEEEKVNPGAEQRAWEDHQLGNAMLKFGAKDAKEGSDGYEFVFDDQIVIDFIQESK 235 (902)
T ss_pred hhcccccch-----hhhhHHHhcccchhccChHHHHHHHHHHHhhhhHhhcCCCcCcccccCceeeccchhhhhHHHhhh
Confidence 555555554 5566778877766777888899999999999999999988874 667889999997 89999887
Q ss_pred cCCCCcccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCc
Q 048746 98 IDGENLDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGK 177 (755)
Q Consensus 98 ~~g~~~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ 177 (755)
..|.+.... .+..........|++.|..||++++..+++.++..++++||+|+||||||||+|||+++.++.++++
T Consensus 236 ~~~~~e~~~----~~~~~~~~~~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk 311 (902)
T KOG0923|consen 236 LAGSNEEDA----KDAPTAYERRESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGK 311 (902)
T ss_pred ccccCcccc----chhhHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCc
Confidence 777653322 1222233367889999999999999999999999999999999999999999999999999998886
Q ss_pred -cccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccC
Q 048746 178 -VGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERT 256 (755)
Q Consensus 178 -ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~ 256 (755)
|.|+||+|++|+++|.|+++++|+++|..|||+++|+++++.+|.|.|||+|||++.++.+|.|.+|++|||||||||+
T Consensus 312 ~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERT 391 (902)
T KOG0923|consen 312 KIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERT 391 (902)
T ss_pred eEeecCcchHHHHHHHHHHHHHhCcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchHHHHHHHHHhcCCCcEEEEeccCCCHHHHHhhhCCCCEEEecCccccceEEEecCCccchHHHHHHHHHHHHhhC
Q 048746 257 LSTDILFGLLKDLIKFRSDLKLLISSATLDAEKFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQ 336 (755)
Q Consensus 257 ~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (755)
+++|++.++++++.+.||+++++++|||+|+++|+.||+++|++.+|||.|||+++|...|+.+|+++++.++++||.++
T Consensus 392 L~TDILfgLvKDIar~RpdLKllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tq 471 (902)
T KOG0923|consen 392 LHTDILFGLVKDIARFRPDLKLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQ 471 (902)
T ss_pred hhhhHHHHHHHHHHhhCCcceEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCe
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGI 416 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v 416 (755)
+.|+||||+++.++++.+.+.|.+....+|....++.++|+|++||.+.|.+||++.++|.+|||+||||||++|+|++|
T Consensus 472 p~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI 551 (902)
T KOG0923|consen 472 PLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGI 551 (902)
T ss_pred CCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCccccccCCCCCccchhccCchHHHHH
Q 048746 417 KYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYHKDMDDNTVPEIQRTNLANVVLI 496 (755)
Q Consensus 417 ~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~~~l~~~~~pei~r~~l~~~~L~ 496 (755)
.||||.|++|++.|+|++||++|.+.|+|++++.||+|||||+|||+|||||+.+.|.+.+.+.+.|||+|+||.+++|.
T Consensus 552 ~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~ 631 (902)
T KOG0923|consen 552 KYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLL 631 (902)
T ss_pred EEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCcCCCCCCCcHHHHHHHHHHHHHccCccCCCCCCHHHHHhhcCCCChhhHHHHHhcccccchHHHHhhhcc
Q 048746 497 LKSLGIDDLVNFDFIDPPPEEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASDKDKCSDEIITIAAM 576 (755)
Q Consensus 497 l~~~~~~~~~~~~~~~~p~~~~i~~a~~~L~~~g~l~~~~~lT~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ 576 (755)
|++|||.|+.+|+|||||+.+++..|+++|+.+|||+..|+||.+|+.|++||+||+++|||+++.+++|.+|+++||||
T Consensus 632 LkSLGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~Eiitiaam 711 (902)
T KOG0923|consen 632 LKSLGIHDLIHFDFLDPPPTETLLKALEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAM 711 (902)
T ss_pred HHhcCcchhcccccCCCCChHHHHHHHHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCcchHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHccCCchhhhhhhcchHHHHHHHHHHHHHHHHHHhc
Q 048746 577 LSVGNSIFYRPKDKQVHADNARMNFHLGNVGDHIALLRVYNSWRECNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERV 656 (755)
Q Consensus 577 ls~~~~~f~~~~~~~~~~~~~~~~f~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~ 656 (755)
||++.++|++|+++..+++++++.|..+. |||+++|++|++|.+++++.+||++||+++++|++|+++|.||..++++.
T Consensus 712 lS~~~svfyrpk~~~v~ad~a~~~f~~~~-gDhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v 790 (902)
T KOG0923|consen 712 LSVGASVFYRPKDKQVHADNARKNFEEPV-GDHIVLLNVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERV 790 (902)
T ss_pred HhcCchheecchhhhhhhhhhhhccCCCC-cchhhhhHHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999998775 99999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcHHHHHHHHHhccccceeeeccCCCeeeeecCceEEECCCCCCccCCCceEEEEeeecChhhhhhhccccC
Q 048746 657 EIEVTSNLNDLDAIKKAITSGFFPHSAKLQKNGSYWTVKHPQRVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELK 736 (755)
Q Consensus 657 ~~~~~~~~~~~~~i~~~l~~g~~~nvA~~~~~g~y~~~~~~~~v~iHPsS~l~~~~p~~vvy~el~~t~k~yir~vt~I~ 736 (755)
++...++..+...|++++.+|||+|+|++.++|+|+++...+.|++||.|+||...|.||+|++++.|+|+|||.++.|+
T Consensus 791 ~~~~~s~~~~~~~irk~i~aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~~~P~wvvy~eLv~tske~mr~~~e~e 870 (902)
T KOG0923|consen 791 EIDLSSNQNDLDKIRKAITAGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFEQLPRWVVYHELVLTSKEFMRQVIEIE 870 (902)
T ss_pred cccccCChHHHHHHHHHHhccccccceeccCCCcceeeccCcceeecCcccccccCCceEEEeehhcChHHHHHHHHhhh
Confidence 99988887788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHcccccccccCCC
Q 048746 737 PEWLVEIAPHYYQLKDVED 755 (755)
Q Consensus 737 ~~wL~~~ap~~~~~~~~~~ 755 (755)
++||.++|||||+-++++|
T Consensus 871 ~~Wlie~aphyyk~kdled 889 (902)
T KOG0923|consen 871 EEWLIEVAPHYYKLKDLED 889 (902)
T ss_pred hhHHHHhchhhhhhhhccc
Confidence 9999999999999998876
No 2
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-144 Score=1160.42 Aligned_cols=629 Identities=60% Similarity=1.007 Sum_probs=608.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHH
Q 048746 119 ALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQE 198 (755)
Q Consensus 119 ~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~ 198 (755)
....+.++|..||++.+..+++.++.+++++||+|+||||||||+||++++.++...++|.|+||||.+|.++|+||+.+
T Consensus 39 ~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE 118 (674)
T KOG0922|consen 39 TNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEE 118 (674)
T ss_pred cccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred hCCccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEE
Q 048746 199 MGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKL 278 (755)
Q Consensus 199 ~~~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~ 278 (755)
+|..+|..|||.+||++.++..|+|+|+|+|+|+|++..||.|++|++|||||||||++++|+++++++.+++.++++|+
T Consensus 119 ~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~Lkl 198 (674)
T KOG0922|consen 119 MGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKL 198 (674)
T ss_pred hCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCHHHHHhhhCCCCEEEecCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHH
Q 048746 279 LISSATLDAEKFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEIL 358 (755)
Q Consensus 279 il~SAT~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L 358 (755)
|+||||+|++.|++||.++|++.++||.|||+++|.+.+..+|+++.+..++++|.++++|+||||++|++||+.+++.|
T Consensus 199 IimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l 278 (674)
T KOG0922|consen 199 IIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELL 278 (674)
T ss_pred EEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCccc
Q 048746 359 KHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMES 438 (755)
Q Consensus 359 ~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~ 438 (755)
.+.........+. .++++||.|+.++|.++|+..+.|.+|||+||||||++|+||+|.||||+|+.|++.|||++|+++
T Consensus 279 ~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~ 357 (674)
T KOG0922|consen 279 RERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDS 357 (674)
T ss_pred HHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccc
Confidence 9987666655554 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCHHhHHhhhcccCCCCCCEEEEeccCccccccCCCCCccchhccCchHHHHHHHHcCCCCCCcCCCCCCCcHHH
Q 048746 439 LLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYHKDMDDNTVPEIQRTNLANVVLILKSLGIDDLVNFDFIDPPPEEA 518 (755)
Q Consensus 439 l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~ 518 (755)
|...|+|++++.||+|||||.|||+|||||++++| +.|++.+.|||+|++|+.++|+||++|++|+..|+|+|||++++
T Consensus 358 L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~-~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~~~ 436 (674)
T KOG0922|consen 358 LIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY-DKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPPPEA 436 (674)
T ss_pred eeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH-hhcccCCCCceeeechHHHHHHHHhcCCCCcccCCCCCCCChHH
Confidence 99999999999999999999999999999999999 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCccCCCCCCH-HHHHhhcCCCChhhHHHHHhcccccchHHHHhhhcccccccccccCCcchHHH-HHH
Q 048746 519 LLKALELLFALSALNKLGELTK-VGRRMAEFPLDPMLSKMIVASDKDKCSDEIITIAAMLSVGNSIFYRPKDKQVH-ADN 596 (755)
Q Consensus 519 i~~a~~~L~~~g~l~~~~~lT~-lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~~~f~~~~~~~~~-~~~ 596 (755)
+..|++.|+.+||||++|.||. +|+.|+++|++|.++|+|+.+..+||++|+++||||||+ +++|++|.+++.+ ++.
T Consensus 437 l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv-~~~f~~p~~~~~~~a~~ 515 (674)
T KOG0922|consen 437 LEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSV-QSVFSRPKDKKAEDADR 515 (674)
T ss_pred HHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeec-cceecCccchhhhhhhH
Confidence 9999999999999999999998 999999999999999999999999999999999999998 6799999998877 889
Q ss_pred HHhcccCCCCCcHHHHHHHHHHHHHccCCchhhhhhhcchHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHh
Q 048746 597 ARMNFHLGNVGDHIALLRVYNSWRECNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEVTSNLNDLDAIKKAITS 676 (755)
Q Consensus 597 ~~~~f~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~~~~~~~~~~~i~~~l~~ 676 (755)
.|.+|..+. |||+|+|++|+.|.+.+.+.+||++||||.+.|++|.+||+||.+++.+.+++..++..+.+.|++|||+
T Consensus 516 ~~~kf~~~e-GDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~~d~~~i~k~l~a 594 (674)
T KOG0922|consen 516 KRAKFANPE-GDHLTLLNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSCGGDMEKIRKCLCA 594 (674)
T ss_pred HHHhhcCcc-cCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHH
Confidence 999999877 9999999999999999999999999999999999999999999999999999888877888999999999
Q ss_pred ccccceeeec-cCCCeeeeecCceEEECCCCCCccCCCceEEEEeeecChhhhhhhccccCHHHHHhHccccccccc
Q 048746 677 GFFPHSAKLQ-KNGSYWTVKHPQRVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEIAPHYYQLKD 752 (755)
Q Consensus 677 g~~~nvA~~~-~~g~y~~~~~~~~v~iHPsS~l~~~~p~~vvy~el~~t~k~yir~vt~I~~~wL~~~ap~~~~~~~ 752 (755)
|||.|+|++. .+| |+|+.+|+.|+|||||+||..+|+||+|+|++.|+|.|||+||.|+++||.++|||+|+..+
T Consensus 595 Gff~N~A~~~~~~~-Yrti~~~~~v~IHPSS~l~~~~p~~viy~el~~Ttk~Y~r~Vt~i~~~wL~e~ap~~~~~~~ 670 (674)
T KOG0922|consen 595 GFFRNVAERDYQDG-YRTIRGGQPVYIHPSSVLFRRKPEWVIYHELLQTTKEYMRNVTAIDPEWLLELAPHFFKQSD 670 (674)
T ss_pred HHHHHHHHhhcCCC-eEEccCCcEEEEechHHhhcCCCCEEEEEEEeecchHhHhheeecCHHHHHHhCchHhhccc
Confidence 9999999997 456 99999999999999999999999999999999999999999999999999999999987554
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-142 Score=1126.72 Aligned_cols=629 Identities=55% Similarity=0.977 Sum_probs=611.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhC
Q 048746 121 EMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMG 200 (755)
Q Consensus 121 ~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~ 200 (755)
+.+.+++..||++..+.+++..|..|+++||+|+||||||||+|+|+++.++..++.|.|+||+|++|+++|+|++.++|
T Consensus 346 k~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~ 425 (1042)
T KOG0924|consen 346 KSIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMG 425 (1042)
T ss_pred chHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhC
Confidence 34888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEE
Q 048746 201 VKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLI 280 (755)
Q Consensus 201 ~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il 280 (755)
..+|..|||.+||++++++.|.|.|+|+|+||+..+.+..|.+|++||+||||||++++|.+.++++.++..+.++++|+
T Consensus 426 ~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliV 505 (1042)
T KOG0924|consen 426 VTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIV 505 (1042)
T ss_pred CccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCHHHHHhhhCCCCEEEecCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHH
Q 048746 281 SSATLDAEKFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKH 360 (755)
Q Consensus 281 ~SAT~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~ 360 (755)
+||||++++|++||+++|.+.++||.|||++.|...|..+|++.++...+.+|...+.|++|||.+++++++..+..+.+
T Consensus 506 tSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~ 585 (1042)
T KOG0924|consen 506 TSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKE 585 (1042)
T ss_pred eeccccHHHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhcccCCC-CCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccc
Q 048746 361 RTRGLGSK-IAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESL 439 (755)
Q Consensus 361 ~~~~~~~~-~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l 439 (755)
.+..+... ..++.|+++|+.||.+.|.++|+....|.+|+||||||||++++||+|.||||+|++|.+.||++.|+..|
T Consensus 586 ~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L 665 (1042)
T KOG0924|consen 586 KLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDAL 665 (1042)
T ss_pred HHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeeccccccccee
Confidence 76544322 24699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHhHHhhhcccCCCCCCEEEEeccCccccccCCCCCccchhccCchHHHHHHHHcCCCCCCcCCCCCCCcHHHH
Q 048746 440 LVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYHKDMDDNTVPEIQRTNLANVVLILKSLGIDDLVNFDFIDPPPEEAL 519 (755)
Q Consensus 440 ~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~i 519 (755)
...|+|.+++.||+|||||+|||.||||||+..|.+.|.+.++|||+|+||.+++|.|+++|++++..|+|+|||+.+.+
T Consensus 666 ~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~ 745 (1042)
T KOG0924|consen 666 QIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNL 745 (1042)
T ss_pred EEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCccCCCCCCHHHHHhhcCCCChhhHHHHHhcccccchHHHHhhhcccccccccccCCcchHHHHHHHHh
Q 048746 520 LKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASDKDKCSDEIITIAAMLSVGNSIFYRPKDKQVHADNARM 599 (755)
Q Consensus 520 ~~a~~~L~~~g~l~~~~~lT~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~~~f~~~~~~~~~~~~~~~ 599 (755)
..|+-.|..+|||+..|.||++|+.|++|||||.++||||.|+.+||.+|+++|+||||+ +.+|++|+++.++++.+|.
T Consensus 746 ~~sly~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSv-p~VF~rpker~eead~ar~ 824 (1042)
T KOG0924|consen 746 LNSLYQLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSV-PAVFYRPKEREEEADAARE 824 (1042)
T ss_pred HHHHHHHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcc-cceeeccccchhhhhhHHh
Confidence 999999999999999999999999999999999999999999999999999999999999 7899999999999999999
Q ss_pred cccCCCCCcHHHHHHHHHHHHHccCCchhhhhhhcchHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHhccc
Q 048746 600 NFHLGNVGDHIALLRVYNSWRECNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEVTSNLNDLDAIKKAITSGFF 679 (755)
Q Consensus 600 ~f~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~~~~~~~~~~~i~~~l~~g~~ 679 (755)
+|..+. |||||+||+|++|++.+++..||++|||+.++|++|+++|.||..+++.+++++.++ .+++.|++|||+|||
T Consensus 825 Kf~~~~-sDhLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~-~dwdivrKCIcs~~f 902 (1042)
T KOG0924|consen 825 KFQVPE-SDHLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISS-DDWDIVRKCICSAYF 902 (1042)
T ss_pred hhcCCC-CchhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccC-chHHHHHHHHHHHHH
Confidence 999987 999999999999999999999999999999999999999999999999999999887 799999999999999
Q ss_pred cceeeeccCCCeeeeecCceEEECCCCCCccC-CCceEEEEeeecChhhhhhhccccCHHHHHhHccccccccc
Q 048746 680 PHSAKLQKNGSYWTVKHPQRVHIHPSSGLAQV-LPRWVVYHELVLTTKEYMRQVTELKPEWLVEIAPHYYQLKD 752 (755)
Q Consensus 680 ~nvA~~~~~g~y~~~~~~~~v~iHPsS~l~~~-~p~~vvy~el~~t~k~yir~vt~I~~~wL~~~ap~~~~~~~ 752 (755)
.|+|++.+.|.|.++++|..+++||||+|++. .|+||||+|++.|+|+||++||.|+|+||.|++|-||+.++
T Consensus 903 hn~Arlkg~g~YV~~~tg~~c~lHPsS~L~g~y~p~Yivyhel~~T~keym~cvT~v~~~wl~E~gp~~y~ik~ 976 (1042)
T KOG0924|consen 903 HNAARLKGIGEYVNLSTGIPCHLHPSSVLHGLYTPDYIVYHELLMTTKEYMQCVTSVSPEWLAELGPMFYSIKE 976 (1042)
T ss_pred HHHHHhccCceEEEccCCcceeecchHhhhcCCCCCeeeehHHHHhHHHHHHHHhhCCHHHHHHhCceeEeccc
Confidence 99999999999999999999999999999987 89999999999999999999999999999999999998664
No 4
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-135 Score=1042.09 Aligned_cols=638 Identities=54% Similarity=0.906 Sum_probs=607.5
Q ss_pred cccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHH
Q 048746 107 HSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRV 186 (755)
Q Consensus 107 ~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~ 186 (755)
+..|...+. ...+.+|.+.|..||+|.++.++++.+.+|+.++++|+||||||||||+++.+......+.|.|+||+|.
T Consensus 24 ~Npf~~~p~-s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrv 102 (699)
T KOG0925|consen 24 INPFNGKPY-SQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRV 102 (699)
T ss_pred cCCCCCCcC-cHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHH
Confidence 344554443 4568889999999999999999999999999999999999999999999999877766678999999999
Q ss_pred HHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHH
Q 048746 187 AAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLL 266 (755)
Q Consensus 187 la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l 266 (755)
+|+++|.|+++++...+|+.|||+++|+++.+++|-+.|||+|+|++..++++.+.+|++||+||||||++.+|.+.+++
T Consensus 103 aamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGll 182 (699)
T KOG0925|consen 103 AAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLL 182 (699)
T ss_pred HHHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcEEEEeccCCCHHHHHhhhCCCCEEEecCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcC
Q 048746 267 KDLIKFRSDLKLLISSATLDAEKFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLT 346 (755)
Q Consensus 267 ~~~~~~~~~~~~il~SAT~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~ 346 (755)
+.+...+|++|+|+||||++.++|..||+++|++.++| .+|++++|.+.++.+|+++++.+++++|..+.+|+||||++
T Consensus 183 k~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLt 261 (699)
T KOG0925|consen 183 KEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLT 261 (699)
T ss_pred HHHHhhCCCceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEec
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCC-----CcEEEEeCCcccccCcCCCeeEEEe
Q 048746 347 GQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEG-----ARKVVLATNIAETSLTIDGIKYVID 421 (755)
Q Consensus 347 ~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g-----~~~vlvaT~i~~~Gidip~v~~VId 421 (755)
+.++|+.+++.+......++.+...+.+.++| +.++..+|++.+.. .+||+|+|++|+++++|++|.+|||
T Consensus 262 geeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VID 337 (699)
T KOG0925|consen 262 GEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVID 337 (699)
T ss_pred CHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEec
Confidence 99999999999998888888888889999999 67788899887643 3899999999999999999999999
Q ss_pred CCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCccccccCCCCCccchhccCchHHHHHHHHcC
Q 048746 422 PGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYHKDMDDNTVPEIQRTNLANVVLILKSLG 501 (755)
Q Consensus 422 ~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~ 501 (755)
.|+.|++.|||+...++|...|+|++++.||+|||||..||+||+||+++.+.+.|.+.+.|||+|++|++++|+||.+|
T Consensus 338 pGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklg 417 (699)
T KOG0925|consen 338 PGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLG 417 (699)
T ss_pred CchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCCCCCcHHHHHHHHHHHHHccCccCCCCCCHHHHHhhcCCCChhhHHHHHhcccccchHHHHhhhccccccc
Q 048746 502 IDDLVNFDFIDPPPEEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASDKDKCSDEIITIAAMLSVGN 581 (755)
Q Consensus 502 ~~~~~~~~~~~~p~~~~i~~a~~~L~~~g~l~~~~~lT~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~ 581 (755)
++++.+|+|+|||.++++++|++.|..++|||++|+||++|..||+||+||++||||+.++.|.|++|+++|+||||+ +
T Consensus 418 I~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsv-P 496 (699)
T KOG0925|consen 418 IDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSV-P 496 (699)
T ss_pred cccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred ccccCCc-chHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHccCCchhhhhhhcchHHHHHHHHHHHHHHHHHHhccccc
Q 048746 582 SIFYRPK-DKQVHADNARMNFHLGNVGDHIALLRVYNSWRECNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEV 660 (755)
Q Consensus 582 ~~f~~~~-~~~~~~~~~~~~f~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~~ 660 (755)
..|+||. ..+..|+.+++.|++.. |||+|++|+|.+|++++...+||++||||+++|+.|..+|.||.++|+|++++.
T Consensus 497 ncFvRp~~~a~kaAdeak~~faH~d-GDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~ 575 (699)
T KOG0925|consen 497 NCFVRPTSSASKAADEAKETFAHID-GDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPL 575 (699)
T ss_pred ccccCCChhHHHHHHHHHHHhccCC-cchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcc
Confidence 7999998 66778899999999988 999999999999999998999999999999999999999999999999999988
Q ss_pred cCCC----CcHHHHHHHHHhccccceeeeccCCCeeeeecCceEEECCCCCCccCCCceEEEEeeecChhhhhhhccccC
Q 048746 661 TSNL----NDLDAIKKAITSGFFPHSAKLQKNGSYWTVKHPQRVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELK 736 (755)
Q Consensus 661 ~~~~----~~~~~i~~~l~~g~~~nvA~~~~~g~y~~~~~~~~v~iHPsS~l~~~~p~~vvy~el~~t~k~yir~vt~I~ 736 (755)
.+.. ++...|+++|++|||.+||+..++|.|.|+++++.|++|||+++. ++|+||+|+|.+.|+|+|||.||.|.
T Consensus 576 ~st~F~S~~y~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l~-~~PeWVlyneFvlt~~N~ir~vt~I~ 654 (699)
T KOG0925|consen 576 CSTDFGSRDYYVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCLD-HKPEWVLYNEFVLTTKNFIRTVTDIR 654 (699)
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEeccccccC-CCCCeEEEeeEEeeccceeeeecccC
Confidence 7543 345689999999999999999988999999999999999999985 67999999999999999999999999
Q ss_pred HHHHHhHcccccccccC
Q 048746 737 PEWLVEIAPHYYQLKDV 753 (755)
Q Consensus 737 ~~wL~~~ap~~~~~~~~ 753 (755)
|+||.++||+||+-.++
T Consensus 655 pewlv~laP~YydlsNf 671 (699)
T KOG0925|consen 655 PEWLVELAPQYYDLSNF 671 (699)
T ss_pred HHHHHHhchhhcccccC
Confidence 99999999999976654
No 5
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=4.1e-118 Score=1051.14 Aligned_cols=614 Identities=38% Similarity=0.661 Sum_probs=565.4
Q ss_pred hcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccE
Q 048746 127 RKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHE 206 (755)
Q Consensus 127 ~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~ 206 (755)
+..||++.+..++++++.+++++||+|+|||||||++|+++++.+....+.|+|++|+|.+|.++|.+++++++..+|..
T Consensus 70 ~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~ 149 (1294)
T PRK11131 70 PENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGC 149 (1294)
T ss_pred CCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcce
Confidence 46699999999999999999999999999999999999999987766567899999999999999999999999999999
Q ss_pred EeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCC
Q 048746 207 VGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLD 286 (755)
Q Consensus 207 vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~ 286 (755)
|||.++++++.+.+++|+|||||+|++++..++.|++|++|||||||||++++||++++++.++..++++|+|+||||++
T Consensus 150 VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATid 229 (1294)
T PRK11131 150 VGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATID 229 (1294)
T ss_pred eceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHhhhCCCCEEEecCccccceEEEecCCc------cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHH
Q 048746 287 AEKFSDYFGSAPIFKIPGRRYPVEIHYTKAPE------ADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKH 360 (755)
Q Consensus 287 ~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~ 360 (755)
.+.|+++|+++|++.++|+.+||+++|.+... .+++...+..+..++ ....|++||||||+.+|+.+++.|.+
T Consensus 230 ~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~ 308 (1294)
T PRK11131 230 PERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADALNK 308 (1294)
T ss_pred HHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999987643 223444444444433 34578999999999999999999987
Q ss_pred hhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCccccc
Q 048746 361 RTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLL 440 (755)
Q Consensus 361 ~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~ 440 (755)
.. .+...+.++||+|++++|.++|+. .|.++||||||+||+|||||+|+||||+|+.|.+.||+.+|++.|.
T Consensus 309 ~~------~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp 380 (1294)
T PRK11131 309 LN------LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLP 380 (1294)
T ss_pred cC------CCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCC
Confidence 43 134678999999999999999986 5789999999999999999999999999999999999999999999
Q ss_pred ccccCHHhHHhhhcccCCCCCCEEEEeccCccccccCCCCCccchhccCchHHHHHHHHcCCCCCCcCCCCCCCcHHHHH
Q 048746 441 VHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYHKDMDDNTVPEIQRTNLANVVLILKSLGIDDLVNFDFIDPPPEEALL 520 (755)
Q Consensus 441 ~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~i~ 520 (755)
..|+|+++|.||+|||||.++|.||+||++++|. .+++++.|||+|++|.+++|+++++|+.++..|+|++||+.++|.
T Consensus 381 ~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~-~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~~~i~ 459 (1294)
T PRK11131 381 IEPISQASANQRKGRCGRVSEGICIRLYSEDDFL-SRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQ 459 (1294)
T ss_pred eeecCHhhHhhhccccCCCCCcEEEEeCCHHHHH-hhhcccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCHHHHH
Confidence 9999999999999999999999999999999984 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCccCC-----CCCCHHHHHhhcCCCChhhHHHHHhcccccchHHHHhhhcccccccccccCCcchHHHHH
Q 048746 521 KALELLFALSALNKL-----GELTKVGRRMAEFPLDPMLSKMIVASDKDKCSDEIITIAAMLSVGNSIFYRPKDKQVHAD 595 (755)
Q Consensus 521 ~a~~~L~~~g~l~~~-----~~lT~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~~~f~~~~~~~~~~~ 595 (755)
.|++.|+++||||.+ ++||++|+.|++||+||++||||+.|..+||++++++|||+||+ .++|.+|.+++..++
T Consensus 460 ~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv-~dpf~~p~~~~~~a~ 538 (1294)
T PRK11131 460 DGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSI-QDPRERPMDKQQASD 538 (1294)
T ss_pred HHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcC-CCcccCCchhHHHHH
Confidence 999999999999864 57999999999999999999999999999999999999999999 568999999999999
Q ss_pred HHHhcccCCCCCcHHHHHHHHHHHHHccC------CchhhhhhhcchHHHHHHHHHHHHHHHHHHhccccccCCCCcHHH
Q 048746 596 NARMNFHLGNVGDHIALLRVYNSWRECNY------STQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEVTSNLNDLDA 669 (755)
Q Consensus 596 ~~~~~f~~~~~~D~~~~l~~~~~~~~~~~------~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~~~~~~~~~~~ 669 (755)
.+++.|.++. |||++++|+|+.|.+... ..+||++||||+++|+++.+++.||..+++++++..+++..+.+.
T Consensus 539 ~~~~~f~~~~-sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~~~~~~~~ 617 (1294)
T PRK11131 539 EKHRRFADKE-SDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYRE 617 (1294)
T ss_pred HHHHhhCCCC-CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccHHH
Confidence 9999998776 999999999999975321 247999999999999999999999999999999988777778899
Q ss_pred HHHHHHhccccceeeeccCC-CeeeeecCceEEECCCCCCccCCCceEEEEeeecChhhhhhhccccCHHHHHhHccccc
Q 048746 670 IKKAITSGFFPHSAKLQKNG-SYWTVKHPQRVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEIAPHYY 748 (755)
Q Consensus 670 i~~~l~~g~~~nvA~~~~~g-~y~~~~~~~~v~iHPsS~l~~~~p~~vvy~el~~t~k~yir~vt~I~~~wL~~~ap~~~ 748 (755)
|++||++|||.|||++..++ .|.+. .+..++|||+|+|++++|+||||+|++.|++.|||.|+.|+|+||.++|||++
T Consensus 618 i~~all~G~~~nva~~~~~~~~y~~~-~~~~~~ihP~S~L~~~~p~wvv~~Elv~Tsr~y~r~va~I~p~Wl~~~a~~l~ 696 (1294)
T PRK11131 618 IHTALLTGLLSHIGMKDAEKQEYTGA-RNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGRIAARIEPEWIEPLAQHLI 696 (1294)
T ss_pred HHHHHHhhcHHHHeeccCCCCeEEcc-CCcEEEEcCCccccCCCCCEEEEEeeeccChhhhhhhcccCHHHHHHHHHHhc
Confidence 99999999999999987665 57764 58899999999999999999999999999999999999999999999999998
Q ss_pred ccccC
Q 048746 749 QLKDV 753 (755)
Q Consensus 749 ~~~~~ 753 (755)
+....
T Consensus 697 ~~~y~ 701 (1294)
T PRK11131 697 KRSYS 701 (1294)
T ss_pred cccCC
Confidence 76544
No 6
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7e-114 Score=1019.67 Aligned_cols=612 Identities=40% Similarity=0.681 Sum_probs=565.3
Q ss_pred hcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccE
Q 048746 127 RKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHE 206 (755)
Q Consensus 127 ~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~ 206 (755)
...||++.+..+++.++.+++++||+|+|||||||++|+++++.+....++|+|++|+|.+|.++|.++++++|..+|..
T Consensus 63 ~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~ 142 (1283)
T TIGR01967 63 PDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEK 142 (1283)
T ss_pred CCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceE
Confidence 45699999999999999999999999999999999999999998766667999999999999999999999999999999
Q ss_pred EeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCC
Q 048746 207 VGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLD 286 (755)
Q Consensus 207 vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~ 286 (755)
|||.++++++.+.+++|+|+|+|+|++++..++.|.+|++|||||||||++++|+++++++.++..++++|+|+||||++
T Consensus 143 VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATld 222 (1283)
T TIGR01967 143 VGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATID 222 (1283)
T ss_pred EeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHhhhCCCCEEEecCccccceEEEecCCcc------chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHH
Q 048746 287 AEKFSDYFGSAPIFKIPGRRYPVEIHYTKAPEA------DYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKH 360 (755)
Q Consensus 287 ~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~ 360 (755)
.+.|+++|+++|++.++|+.+|++++|.+.... ++.+.....+..++. ...|+||||+||+.+|+.+++.|.+
T Consensus 223 ~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~L~~ 301 (1283)
T TIGR01967 223 PERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPGDILIFLPGEREIRDAAEILRK 301 (1283)
T ss_pred HHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999875421 244444444444443 3569999999999999999999987
Q ss_pred hhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCccccc
Q 048746 361 RTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLL 440 (755)
Q Consensus 361 ~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~ 440 (755)
... .++.+.++||+|++++|.++|+.+ +.++||||||+||+|||||+|++|||+|+.|.+.||+.+|++.|.
T Consensus 302 ~~~------~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~ 373 (1283)
T TIGR01967 302 RNL------RHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLP 373 (1283)
T ss_pred cCC------CCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccC
Confidence 431 347899999999999999999875 358999999999999999999999999999999999999999999
Q ss_pred ccccCHHhHHhhhcccCCCCCCEEEEeccCccccccCCCCCccchhccCchHHHHHHHHcCCCCCCcCCCCCCCcHHHHH
Q 048746 441 VHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYHKDMDDNTVPEIQRTNLANVVLILKSLGIDDLVNFDFIDPPPEEALL 520 (755)
Q Consensus 441 ~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~i~ 520 (755)
..|+|+++|.||+|||||.++|+||+||++++|. .+++++.|||+|++|.+++|+++++|+.++..|+|++||+.+++.
T Consensus 374 ~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~-~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~~i~ 452 (1283)
T TIGR01967 374 IEPISQASANQRKGRCGRVAPGICIRLYSEEDFN-SRPEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRAIR 452 (1283)
T ss_pred CccCCHHHHHHHhhhhCCCCCceEEEecCHHHHH-hhhhccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHHHHH
Confidence 9999999999999999999999999999999985 688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCccCCC---CCCHHHHHhhcCCCChhhHHHHHhcccccchHHHHhhhcccccccccccCCcchHHHHHHH
Q 048746 521 KALELLFALSALNKLG---ELTKVGRRMAEFPLDPMLSKMIVASDKDKCSDEIITIAAMLSVGNSIFYRPKDKQVHADNA 597 (755)
Q Consensus 521 ~a~~~L~~~g~l~~~~---~lT~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~~~f~~~~~~~~~~~~~ 597 (755)
.|++.|..+||||.+| +||++|+.|+.||++|++|+||+.|..+||++++++|||+||+ +++|.+|.+++..++.+
T Consensus 453 ~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~-~dp~~~p~~~~~~a~~~ 531 (1283)
T TIGR01967 453 DGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSI-QDPRERPMEKQQAADQA 531 (1283)
T ss_pred HHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcC-CCcCCCcchhHHHHHHH
Confidence 9999999999999998 7999999999999999999999999999999999999999999 56899999999999999
Q ss_pred HhcccCCCCCcHHHHHHHHHHHHHcc------CCchhhhhhhcchHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHH
Q 048746 598 RMNFHLGNVGDHIALLRVYNSWRECN------YSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEVTSNLNDLDAIK 671 (755)
Q Consensus 598 ~~~f~~~~~~D~~~~l~~~~~~~~~~------~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~~~~~~~~~~~i~ 671 (755)
++.|.... |||++++|+|+.|.+.. ...+||++||||+++|+++.+++.||..+++++++..+++..+.+.++
T Consensus 532 ~~~f~~~~-sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~~~~~~~~~i~ 610 (1283)
T TIGR01967 532 HARFKDPR-SDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEEPADYDAIH 610 (1283)
T ss_pred HHHhcCCC-CCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcCCCCccHHHHH
Confidence 99998765 99999999999997532 235899999999999999999999999999988887766566677899
Q ss_pred HHHHhccccceeeeccCCCeeeeecCceEEECCCCCCccCCCceEEEEeeecChhhhhhhccccCHHHHHhHcccccccc
Q 048746 672 KAITSGFFPHSAKLQKNGSYWTVKHPQRVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEIAPHYYQLK 751 (755)
Q Consensus 672 ~~l~~g~~~nvA~~~~~g~y~~~~~~~~v~iHPsS~l~~~~p~~vvy~el~~t~k~yir~vt~I~~~wL~~~ap~~~~~~ 751 (755)
+||++||++|||+++..|.|.+ .+|+.++|||+|+|++.+|+||||+|++.|++.|||.|++|+|+||.+++||+++.+
T Consensus 611 ~~l~~g~~~~iA~~~~~~~y~~-~~g~~~~ihP~S~L~~~~p~wvv~~elv~t~~~~ir~~a~I~p~wl~~~~~~~~~~~ 689 (1283)
T TIGR01967 611 KALLSGLLSQIGMKDEKHEYDG-ARGRKFHIFPGSPLFKKPPKWVMAAELVETSKLYARLVAKIEPEWVEPVAGHLIKKN 689 (1283)
T ss_pred HHHHHhhHHHHheeCCCCcEEe-cCCcEEEECCCccccCCCCCEEEEeeecccchheEeeeccCCHHHHHHHhHHHhEec
Confidence 9999999999999887778996 568899999999999988999999999999999999999999999999999998765
No 7
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.8e-109 Score=947.43 Aligned_cols=620 Identities=49% Similarity=0.756 Sum_probs=567.8
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHh
Q 048746 120 LEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEM 199 (755)
Q Consensus 120 ~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~ 199 (755)
...+...+..||++..+.+++.++.+++++||+|||||||||++|+++++.++..+++|+|++|||.+|.++|+|+++++
T Consensus 39 ~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel 118 (845)
T COG1643 39 VPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEEL 118 (845)
T ss_pred cchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHh
Confidence 34456678889999999999999999999999999999999999999999998777899999999999999999999999
Q ss_pred CCccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCC-CcEE
Q 048746 200 GVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRS-DLKL 278 (755)
Q Consensus 200 ~~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~-~~~~ 278 (755)
|.++|..|||.+||++..+.+|+|.|+|+|+|+++++.++.|+.|++|||||||||++++|+++++++.++..++ ++|+
T Consensus 119 ~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 119 GEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred CCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999777554 8999
Q ss_pred EEeccCCCHHHHHhhhCCCCEEEecCccccceEEEecCCccch-HHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHH
Q 048746 279 LISSATLDAEKFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADY-IDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEI 357 (755)
Q Consensus 279 il~SAT~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~ 357 (755)
|+||||+|.++|++||+++|++.++||.|||+++|.+....++ ++..+...+.++.....|+||||+|+..+|+.+++.
T Consensus 199 IimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~ 278 (845)
T COG1643 199 IIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEW 278 (845)
T ss_pred EEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999988888888 899999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcc
Q 048746 358 LKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGME 437 (755)
Q Consensus 358 L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~ 437 (755)
|.+. .++ .++.++|+||.|+.++|.++|+..+.|++|||+||||||+|||||+|++|||+|+.|.+.||+++|++
T Consensus 279 L~~~--~l~---~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~ 353 (845)
T COG1643 279 LEKA--ELG---DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLT 353 (845)
T ss_pred HHhc--ccc---CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCce
Confidence 9971 111 46899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCHHhHHhhhcccCCCCCCEEEEeccCccccccCCCCCccchhccCchHHHHHHHHcCCC-CCCcCCCCCCCcH
Q 048746 438 SLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYHKDMDDNTVPEIQRTNLANVVLILKSLGID-DLVNFDFIDPPPE 516 (755)
Q Consensus 438 ~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~-~~~~~~~~~~p~~ 516 (755)
.|.+.|+|++++.||+|||||.+||+||+||++++|. .|+.++.|||+|+||++++|+++++|++ ++..|+|+|||+.
T Consensus 354 ~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~-~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~~ 432 (845)
T COG1643 354 RLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL-AFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPE 432 (845)
T ss_pred eeeEEEechhhhhhhccccccCCCceEEEecCHHHHH-hcccCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCCh
Confidence 9999999999999999999999999999999999997 9999999999999999999999999995 9999999999999
Q ss_pred HHHHHHHHHHHHccCccCCCCCCHHHHHhhcCCCChhhHHHHHhcccccchHHHHhhhccccccc--ccccCCcchHH--
Q 048746 517 EALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASDKDKCSDEIITIAAMLSVGN--SIFYRPKDKQV-- 592 (755)
Q Consensus 517 ~~i~~a~~~L~~~g~l~~~~~lT~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~--~~f~~~~~~~~-- 592 (755)
.++..|++.|..+||||.+|.||++|+.|+.||+||++|+||+.+..+||++++++|||+||+.+ +.|.++.+.+.
T Consensus 433 ~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~ 512 (845)
T COG1643 433 AAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQR 512 (845)
T ss_pred HHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999965 14777766554
Q ss_pred -HHHHHH-hcccC--CCCCcHHHHHHHHHHHHHcc------CCchhhhhhhcchHHHHHHHHHHHHHHHHHHh-cccccc
Q 048746 593 -HADNAR-MNFHL--GNVGDHIALLRVYNSWRECN------YSTQWCYENYIQVRSMKRARDIRDQLEGLLER-VEIEVT 661 (755)
Q Consensus 593 -~~~~~~-~~f~~--~~~~D~~~~l~~~~~~~~~~------~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~-~~~~~~ 661 (755)
..+.++ ..+.. ...+||++++++|..|.... ...+||..++++.+.|.++..++.++...+.+ .+....
T Consensus 513 ~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~~ 592 (845)
T COG1643 513 TAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILA 592 (845)
T ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchhh
Confidence 344444 23333 12499999999999998765 46799999999999999999999998877766 332221
Q ss_pred CCCC------------------cHHHHHHHHHhccccceeeeccCCC-eeeeecCceEEECCCC-CCccCCCceEEEEee
Q 048746 662 SNLN------------------DLDAIKKAITSGFFPHSAKLQKNGS-YWTVKHPQRVHIHPSS-GLAQVLPRWVVYHEL 721 (755)
Q Consensus 662 ~~~~------------------~~~~i~~~l~~g~~~nvA~~~~~g~-y~~~~~~~~v~iHPsS-~l~~~~p~~vvy~el 721 (755)
.... .++.+.+++++|++.|++.+...+. |.++.++..|.+||+| ......++|+.|++.
T Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~ 672 (845)
T COG1643 593 AAEIDEDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQLDGRPYVTLSDNTPVFAHPSSVRLGLVLLEWIKYAEF 672 (845)
T ss_pred hcccCcchhhhhhhhhhhccchhHHHHhhhhhhheecceeeeeccccccccCCCCceeEecchhHhhcccCcchHHHHHH
Confidence 1110 3578999999999999999887764 9998889999999999 566678999999999
Q ss_pred ecChhhhhh-----------hccccCHHHHHhHcc
Q 048746 722 VLTTKEYMR-----------QVTELKPEWLVEIAP 745 (755)
Q Consensus 722 ~~t~k~yir-----------~vt~I~~~wL~~~ap 745 (755)
+.|++.|++ .++++.+.||.+.++
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~wL~~~~~ 707 (845)
T COG1643 673 LRTRKGYLREGRGERWPDVQTLIELLKLWLKEQVK 707 (845)
T ss_pred HHHHHHHHhhcccccCcccchHhhhHHHhhhhhcc
Confidence 999999999 599999999999988
No 8
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-107 Score=876.59 Aligned_cols=632 Identities=41% Similarity=0.674 Sum_probs=567.5
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCC-----CccccCccHHHHHHHHH
Q 048746 118 SALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQ-----GKVGCTQPRRVAAMSVA 192 (755)
Q Consensus 118 ~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~-----~~ilv~~P~r~la~q~a 192 (755)
.+-..+++.|..|||..--++++++|..|.++||||+||||||||+||+++++++... +.|.|++|||.+|..+|
T Consensus 243 ~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamA 322 (1172)
T KOG0926|consen 243 SRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMA 322 (1172)
T ss_pred cCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHH
Confidence 4456789999999999999999999999999999999999999999999999988643 58999999999999999
Q ss_pred HHHHHHhCCccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhc
Q 048746 193 ARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKF 272 (755)
Q Consensus 193 ~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~ 272 (755)
+||+.++|. .|..|||++||+....+.+.|.|||+|+|++.+.++..|..|++|||||||||++++|++.+++.++..+
T Consensus 323 kRVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~L 401 (1172)
T KOG0926|consen 323 KRVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPL 401 (1172)
T ss_pred HHHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHH
Confidence 999999998 8999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred C----------CCcEEEEeccCCCHHHHHh---hhC-CCCEEEecCccccceEEEecCCccchHHHHHHHHHHHHhhCCC
Q 048746 273 R----------SDLKLLISSATLDAEKFSD---YFG-SAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSP 338 (755)
Q Consensus 273 ~----------~~~~~il~SAT~~~~~l~~---~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (755)
| ..+++|+||||+.+.+|.+ .|. ..|++.++.|.|||.+||......+|+..+....+.||...+.
T Consensus 402 R~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~ 481 (1172)
T KOG0926|consen 402 RQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPP 481 (1172)
T ss_pred HHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCC
Confidence 4 3689999999998888773 454 3679999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhhccc-----------------------------------------------------
Q 048746 339 GDILVFLTGQEEIETADEILKHRTRGL----------------------------------------------------- 365 (755)
Q Consensus 339 ~~iLVF~~~~~~~~~l~~~L~~~~~~~----------------------------------------------------- 365 (755)
|.||||++++.+++.+++.|++..+..
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 999999999999999999999873200
Q ss_pred ------------------C-------------------CCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCccc
Q 048746 366 ------------------G-------------------SKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAE 408 (755)
Q Consensus 366 ------------------~-------------------~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~ 408 (755)
| .....+.|+|+|+-|+.++|.++|+..+.|.+-+|||||+||
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 0 001246799999999999999999999999999999999999
Q ss_pred ccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCccccccCCCCCccchhcc
Q 048746 409 TSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYHKDMDDNTVPEIQRT 488 (755)
Q Consensus 409 ~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~~~l~~~~~pei~r~ 488 (755)
++++||+|+||||+|..|...||..+|++++.+.|+|++++-||+|||||.|||.|||||+...|.+.+.++..|||++.
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~ 721 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKK 721 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHcCCCCCCcCCCCCCCcHHHHHHHHHHHHHccCccCCCCCCHHHHHhhcCCCChhhHHHHHhcccccchH
Q 048746 489 NLANVVLILKSLGIDDLVNFDFIDPPPEEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASDKDKCSD 568 (755)
Q Consensus 489 ~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~i~~a~~~L~~~g~l~~~~~lT~lG~~~~~~pl~p~~~~~l~~~~~~~c~~ 568 (755)
+.++++|+|++|+|+.+.+|||.+||...+++.|.+.|..+||||.+|.||++|+.||.||+.|+++|||+.+.+.+|+.
T Consensus 722 Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lp 801 (1172)
T KOG0926|consen 722 PVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLP 801 (1172)
T ss_pred cHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccccccC--------------Ccc------------------hHHHHHHHHhcccCCCCCcHHHHHHHH
Q 048746 569 EIITIAAMLSVGNSIFYR--------------PKD------------------KQVHADNARMNFHLGNVGDHIALLRVY 616 (755)
Q Consensus 569 ~~~~i~a~ls~~~~~f~~--------------~~~------------------~~~~~~~~~~~f~~~~~~D~~~~l~~~ 616 (755)
-.+.++|+||+.. +|+. |.+ .+.....++.+|.... ||-|+++.+.
T Consensus 802 y~i~lvsaLsv~e-~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~-sd~l~Ll~Av 879 (1172)
T KOG0926|consen 802 YNIALVSALSVYE-VLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLD-SDALVLLSAV 879 (1172)
T ss_pred HHHHHHHHHhccc-hhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCC-ccHHHHHHHH
Confidence 9999999999953 4431 111 0112234566677665 8999999999
Q ss_pred HHHHHccCCchhhhhhhcchHHHHHHHHHHHHHHHHHHhcccc-------ccCC-CC--cHHHHHHHHHhccccceeeec
Q 048746 617 NSWRECNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIE-------VTSN-LN--DLDAIKKAITSGFFPHSAKLQ 686 (755)
Q Consensus 617 ~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~-------~~~~-~~--~~~~i~~~l~~g~~~nvA~~~ 686 (755)
.++....+...||..|||..++|.+++++|+||..++.+..+. +... +. ....++..||+||.++||++.
T Consensus 880 ~a~ey~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag~~DrVArk~ 959 (1172)
T KOG0926|consen 880 SAAEYAENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAGFADRVARKV 959 (1172)
T ss_pred HHHHhhhhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998888778899999999999999999999999988754331 1111 11 234689999999999999876
Q ss_pred cCCCeeeeecCceEEECCCCCCccCCCceEEEEeeecChhhhhhh-ccccCHHHHHhHccccccccc
Q 048746 687 KNGSYWTVKHPQRVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQ-VTELKPEWLVEIAPHYYQLKD 752 (755)
Q Consensus 687 ~~g~y~~~~~~~~v~iHPsS~l~~~~p~~vvy~el~~t~k~yir~-vt~I~~~wL~~~ap~~~~~~~ 752 (755)
+-.-|.+..-+..|+|||+|+|++..|+||+|.|++.|...||.. ++.|.|+||..+++.|++..+
T Consensus 960 ~~~~y~~~~i~~~~fl~~~svl~~~ape~viY~el~~~~~~~~~~~v~~v~pewl~~~~~slcn~~e 1026 (1172)
T KOG0926|consen 960 DATEYDAAKIQEPVFLHRWSVLINSAPELVIYQELLLTNRPYMHGGVTAVRPEWLLNHAKSLCNFSE 1026 (1172)
T ss_pred cccccchhhhcCceeeeehhhhhccCccceehhhhhhcCCcccccceEEEchHHHHhhhhhhccccc
Confidence 555577777777899999999999999999999999998876555 999999999999998776543
No 9
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=2.6e-105 Score=906.98 Aligned_cols=627 Identities=39% Similarity=0.621 Sum_probs=562.5
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccC--CCccccCccHHHHHHHHHHHH
Q 048746 118 SALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTK--QGKVGCTQPRRVAAMSVAARV 195 (755)
Q Consensus 118 ~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~--~~~ilv~~P~r~la~q~a~~~ 195 (755)
...+.+.+.|..||++..+++++.++.++++++|+|+||||||||+||++++..... ..+|+|+||||..|.++|+|+
T Consensus 160 ~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRV 239 (924)
T KOG0920|consen 160 ESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERV 239 (924)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHH
Confidence 567788899999999999999999999999999999999999999999999864433 348999999999999999999
Q ss_pred HHHhCCccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCC
Q 048746 196 SQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSD 275 (755)
Q Consensus 196 ~~~~~~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~ 275 (755)
+++.+...|..|||++|.++..+..+.+.|||.|.|++.++.++.+.++++||+||+|||++++||++.+++.++..+|+
T Consensus 240 a~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~ 319 (924)
T KOG0920|consen 240 AKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPD 319 (924)
T ss_pred HHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCC
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccCCCHHHHHhhhCCCCEEEecCccccceEEEecC-----------------Cccc--------------hHHH
Q 048746 276 LKLLISSATLDAEKFSDYFGSAPIFKIPGRRYPVEIHYTKA-----------------PEAD--------------YIDA 324 (755)
Q Consensus 276 ~~~il~SAT~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~-----------------~~~~--------------~~~~ 324 (755)
+|+|+||||+|++.|+.||+++|++.++|+.|||..+|... ++.. ..+.
T Consensus 320 LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~L 399 (924)
T KOG0920|consen 320 LKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDL 399 (924)
T ss_pred ceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHH
Confidence 99999999999999999999999999999999999887531 1111 0112
Q ss_pred HHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeC
Q 048746 325 AIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLAT 404 (755)
Q Consensus 325 ~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT 404 (755)
....+..++.....|.||||+||..+|..+.+.|......... ..+.+.++||.|+..+|+.+|...+.|.+|||+||
T Consensus 400 i~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~--~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaT 477 (924)
T KOG0920|consen 400 IEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS--LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILAT 477 (924)
T ss_pred HHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc--cceEEEeccccCChHHHHHhcCCCCCCcchhhhhh
Confidence 2233344555556799999999999999999999865432221 45889999999999999999999999999999999
Q ss_pred CcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCccccccCCCCCccc
Q 048746 405 NIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYHKDMDDNTVPE 484 (755)
Q Consensus 405 ~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~~~l~~~~~pe 484 (755)
|+||++|+||+|.||||+|..|++.||+..++++|...|+|++++.||+|||||..+|.||+||++..|+..+..+++||
T Consensus 478 NIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PE 557 (924)
T KOG0920|consen 478 NIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPE 557 (924)
T ss_pred hhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhcccccCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999977666699999
Q ss_pred hhccCchHHHHHHHHcCCCCCCcC--CCCCCCcHHHHHHHHHHHHHccCccCCCCCCHHHHHhhcCCCChhhHHHHHhcc
Q 048746 485 IQRTNLANVVLILKSLGIDDLVNF--DFIDPPPEEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASD 562 (755)
Q Consensus 485 i~r~~l~~~~L~l~~~~~~~~~~~--~~~~~p~~~~i~~a~~~L~~~g~l~~~~~lT~lG~~~~~~pl~p~~~~~l~~~~ 562 (755)
|+|.+|.++||++|.+++..+..| ..++||+.+++..|+..|..+|||+.+++||++|+.++.+|+||++|||++.|.
T Consensus 558 ilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~ 637 (924)
T KOG0920|consen 558 ILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGA 637 (924)
T ss_pred HHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchhheehh
Confidence 999999999999999998877765 678999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHhhhcccccccccccCCcchHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHcc-----CCchhhhhhhcchH
Q 048746 563 KDKCSDEIITIAAMLSVGNSIFYRPKDKQVHADNARMNFHLGNVGDHIALLRVYNSWRECN-----YSTQWCYENYIQVR 637 (755)
Q Consensus 563 ~~~c~~~~~~i~a~ls~~~~~f~~~~~~~~~~~~~~~~f~~~~~~D~~~~l~~~~~~~~~~-----~~~~~c~~~~l~~~ 637 (755)
.|+|++++++|||+|+. .++|+.|.+++..++++++.|..++.|||||++++|+.|++.. ...+||.+|||+..
T Consensus 638 if~cLdp~l~iaa~Ls~-k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~ 716 (924)
T KOG0920|consen 638 IFGCLDPALTIAAALSF-KSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSN 716 (924)
T ss_pred hccccchhhhHHHHhcc-CCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHhhccHH
Confidence 99999999999999996 7899999999999999999998777899999999999998753 34689999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccc------------CCCCcHHHHHHHHHhccccceeeecc---CC---CeeeeecCce
Q 048746 638 SMKRARDIRDQLEGLLERVEIEVT------------SNLNDLDAIKKAITSGFFPHSAKLQK---NG---SYWTVKHPQR 699 (755)
Q Consensus 638 ~l~~~~~ir~qL~~~l~~~~~~~~------------~~~~~~~~i~~~l~~g~~~nvA~~~~---~g---~y~~~~~~~~ 699 (755)
+|+++.+++.|+.+.+.++++... .+..+.+.++++||+|+|||+|+... .. .|.+ .....
T Consensus 717 ~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~~~~~~~~~~~~~-~~~~~ 795 (924)
T KOG0920|consen 717 TLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRRMEPKSKSVTFVT-KADGR 795 (924)
T ss_pred HHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeecccCCcCcceeec-CCcee
Confidence 999999999999999999876432 23456789999999999999998763 22 3333 22247
Q ss_pred EEECCCCCCccC---CCceEEEEeeecChh-hhhhhccccCHHHHHhHccccc
Q 048746 700 VHIHPSSGLAQV---LPRWVVYHELVLTTK-EYMRQVTELKPEWLVEIAPHYY 748 (755)
Q Consensus 700 v~iHPsS~l~~~---~p~~vvy~el~~t~k-~yir~vt~I~~~wL~~~ap~~~ 748 (755)
|+|||+|+.++. ..+|++|++.+.|++ .|+|++|.+.+-.++.+....+
T Consensus 796 v~i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~llfgg~~~ 848 (924)
T KOG0920|consen 796 VIIHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALLLFGGGIS 848 (924)
T ss_pred EEEecchhhccccccCCcceEEeeecccCCcceeeecCCCCcHHheeecCCce
Confidence 999999998753 235999999999999 9999999999999988876544
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.5e-92 Score=821.31 Aligned_cols=575 Identities=33% Similarity=0.516 Sum_probs=496.6
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEee
Q 048746 130 LPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGY 209 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~ 209 (755)
||++.+..+++.++.+++++|++|+|||||||++|+++++... .+++|+|++|||++|.|++++++++++..+|..|||
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 7999999999999999999999999999999999999987753 456999999999999999999999999999999999
Q ss_pred eeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-cCCCcEEEEeccCCCHH
Q 048746 210 SIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-FRSDLKLLISSATLDAE 288 (755)
Q Consensus 210 ~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-~~~~~~~il~SAT~~~~ 288 (755)
.++++...+.+++|+|+|+|+|++++..++.++++++|||||||||++++|+.+.+++.+.. .+++.|+|+||||++.+
T Consensus 80 ~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~ 159 (819)
T TIGR01970 80 RVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE 159 (819)
T ss_pred EEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH
Confidence 99999988889999999999999999999999999999999999999999999988887765 67899999999999999
Q ss_pred HHHhhhCCCCEEEecCccccceEEEecCCccchHHHHHH-HHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCC
Q 048746 289 KFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADYIDAAIV-TVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGS 367 (755)
Q Consensus 289 ~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~ 367 (755)
.+.+||++++++.++|+.+||+++|...+..+++...+. .+..+. ....|++|||||++.+++.+++.|.+...
T Consensus 160 ~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l-~~~~g~iLVFlpg~~eI~~l~~~L~~~~~---- 234 (819)
T TIGR01970 160 RLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHAL-ASETGSILVFLPGQAEIRRVQEQLAERLD---- 234 (819)
T ss_pred HHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHH-HhcCCcEEEEECCHHHHHHHHHHHHhhcC----
Confidence 999999999999999999999999988766555443332 333333 33468999999999999999999987431
Q ss_pred CCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHH
Q 048746 368 KIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKA 447 (755)
Q Consensus 368 ~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~ 447 (755)
.++.++++||+|++++|.++++.|++|.++||||||+||+|||||+|++|||+|+.|...||+.+|++.|.+.|+|++
T Consensus 235 --~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSka 312 (819)
T TIGR01970 235 --SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQA 312 (819)
T ss_pred --CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHH
Confidence 358899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhcccCCCCCCEEEEeccCccccccCCCCCccchhccCchHHHHHHHHcCCCCCCcCCCCCCCcHHHHHHHHHHHH
Q 048746 448 SAMQRAGRSGRTGPGKCFRLYTLHNYHKDMDDNTVPEIQRTNLANVVLILKSLGIDDLVNFDFIDPPPEEALLKALELLF 527 (755)
Q Consensus 448 ~~~QR~GRaGR~g~G~~~~l~~~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~i~~a~~~L~ 527 (755)
+|.||+|||||.++|.||+||+++++ ..|.++..|||++++|++++|.++++|+.++..|+|+|||+.+++..|++.|.
T Consensus 313 sa~QR~GRAGR~~~G~cyrL~t~~~~-~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~~L~ 391 (819)
T TIGR01970 313 SATQRAGRAGRLEPGVCYRLWSEEQH-QRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQ 391 (819)
T ss_pred HHHhhhhhcCCCCCCEEEEeCCHHHH-HhhhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999988 57999999999999999999999999999999999999999999999999999
Q ss_pred HccCccCCCCCCHHHHHhhcCCCChhhHHHHHhcccccchHHHHhhhcccccccccccCCcchHHHHHHHHhcccCCCCC
Q 048746 528 ALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASDKDKCSDEIITIAAMLSVGNSIFYRPKDKQVHADNARMNFHLGNVG 607 (755)
Q Consensus 528 ~~g~l~~~~~lT~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~~~f~~~~~~~~~~~~~~~~f~~~~~~ 607 (755)
.+||||.+|+||++|+.|++||++|++|+||+.|..+||.+++++|||+||+.+ ++-. . .+
T Consensus 392 ~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~-~~~~-----------------~-~~ 452 (819)
T TIGR01970 392 RLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERG-LPRQ-----------------G-GA 452 (819)
T ss_pred HCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCC-CCCC-----------------C-cc
Confidence 999999999999999999999999999999999999999999999999999843 2110 1 26
Q ss_pred cHHHHHHHHHHHHHccCCchhhhhhhcchHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHhccccceeeecc
Q 048746 608 DHIALLRVYNSWRECNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEVTSNLNDLDAIKKAITSGFFPHSAKLQK 687 (755)
Q Consensus 608 D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~~~~~~~~~~~i~~~l~~g~~~nvA~~~~ 687 (755)
|....+..++.. . ... ...+.++.+|+...+... ........+. .+..+++.||+++||+++.
T Consensus 453 d~~~~~~~~~~~---~--~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~g~lla~a~pdria~~r~ 515 (819)
T TIGR01970 453 DLMNRLHRLQQG---R--QGR----------GQRAQQLAKKLRRRLRFS-QADSGAIASH-ALGLLLALAFPDRIAKRRG 515 (819)
T ss_pred cHHHHHHHHhhc---c--hhh----------HHHHHHHHHHHHHHhCcC-cCCCcccccc-hHhHHHhhhChHhheeccC
Confidence 876666655421 0 111 123345555554433210 0000111111 2667899999999998775
Q ss_pred C-CCeeeeecCceEEECCCCCCccCCCceEEEEeeecCh---hhhhhhccccCHHHHHhHccccccccc
Q 048746 688 N-GSYWTVKHPQRVHIHPSSGLAQVLPRWVVYHELVLTT---KEYMRQVTELKPEWLVEIAPHYYQLKD 752 (755)
Q Consensus 688 ~-g~y~~~~~~~~v~iHPsS~l~~~~p~~vvy~el~~t~---k~yir~vt~I~~~wL~~~ap~~~~~~~ 752 (755)
+ |.|+ +.+|+.+.++|.|.|++ .+|++..++..++ ...|+.+++|+++||.+.+++.+..++
T Consensus 516 ~~~~y~-l~~G~~~~l~~~~~l~~--~~~l~~a~~~~~~~~~~~~i~~a~~i~~~~~~~~~~~~~~~~~ 581 (819)
T TIGR01970 516 QPGRYQ-LANGRGAVLSAEDALAR--EPWLVAADLGEGQGKTAARILLAAPVDEALLRQVLPDLVVQVD 581 (819)
T ss_pred CCCeEE-CCCCCeeEeCCCCcccC--CCeEEEEEeeccCCccccceeeeccCCHHHHHHHhHHHceEEE
Confidence 4 4687 68999999999999987 6999999997442 357889999999999999999876543
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4e-92 Score=821.89 Aligned_cols=565 Identities=34% Similarity=0.551 Sum_probs=491.7
Q ss_pred CCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEe
Q 048746 129 TLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVG 208 (755)
Q Consensus 129 ~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg 208 (755)
.||++.+..+++.++.+++++|++|||||||||++|+++++.... +++|+|++|||++|.|++++++++++..+|..+|
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-CCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 499999999999999999999999999999999999999886543 4589999999999999999999999999999999
Q ss_pred eeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-cCCCcEEEEeccCCCH
Q 048746 209 YSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-FRSDLKLLISSATLDA 287 (755)
Q Consensus 209 ~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-~~~~~~~il~SAT~~~ 287 (755)
|.++++...+..++|+|+|||+|++++..++.+.++++|||||+|||++++|+.+++++.+.. .++++|+|+||||++.
T Consensus 82 y~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~ 161 (812)
T PRK11664 82 YRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDN 161 (812)
T ss_pred EEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCH
Confidence 999999988889999999999999999999999999999999999999999999998877765 5789999999999999
Q ss_pred HHHHhhhCCCCEEEecCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCC
Q 048746 288 EKFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGS 367 (755)
Q Consensus 288 ~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~ 367 (755)
+.+++||.+++++.++|+.+|++++|...+..+++...+...+........|++||||||+++++.+++.|.+...
T Consensus 162 ~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~---- 237 (812)
T PRK11664 162 DRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVA---- 237 (812)
T ss_pred HHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhcc----
Confidence 9999999999999999999999999998776666654443333333334479999999999999999999986321
Q ss_pred CCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHH
Q 048746 368 KIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKA 447 (755)
Q Consensus 368 ~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~ 447 (755)
.++.+.++||+|++++|.++++.|++|+++||||||++|+|||||+|++|||+|+.|...||+.+|++.|.+.++|++
T Consensus 238 --~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSka 315 (812)
T PRK11664 238 --SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQA 315 (812)
T ss_pred --CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechh
Confidence 247899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhcccCCCCCCEEEEeccCccccccCCCCCccchhccCchHHHHHHHHcCCCCCCcCCCCCCCcHHHHHHHHHHHH
Q 048746 448 SAMQRAGRSGRTGPGKCFRLYTLHNYHKDMDDNTVPEIQRTNLANVVLILKSLGIDDLVNFDFIDPPPEEALLKALELLF 527 (755)
Q Consensus 448 ~~~QR~GRaGR~g~G~~~~l~~~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~i~~a~~~L~ 527 (755)
+|.||+|||||.++|.||+||+++++ ..+.++..|||++++|++++|.++++|+.++..|+|+|||+..++..|++.|.
T Consensus 316 sa~QR~GRaGR~~~G~cyrL~t~~~~-~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L~ 394 (812)
T PRK11664 316 SMTQRAGRAGRLEPGICLHLYSKEQA-ERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQ 394 (812)
T ss_pred hhhhhccccCCCCCcEEEEecCHHHH-hhCccCCCCceeccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999988 46999999999999999999999999999999999999999999999999999
Q ss_pred HccCccCCCCCCHHHHHhhcCCCChhhHHHHHhcccccchH--HHHhhhcccccccccccCCcchHHHHHHHHhcccCCC
Q 048746 528 ALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASDKDKCSD--EIITIAAMLSVGNSIFYRPKDKQVHADNARMNFHLGN 605 (755)
Q Consensus 528 ~~g~l~~~~~lT~lG~~~~~~pl~p~~~~~l~~~~~~~c~~--~~~~i~a~ls~~~~~f~~~~~~~~~~~~~~~~f~~~~ 605 (755)
.+||||++|+||++|+.|++||++|++|+||+.|..++|.. .++.|||+|++. +. . .
T Consensus 395 ~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~-~~-----~--------------~- 453 (812)
T PRK11664 395 QLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEP-PR-----S--------------G- 453 (812)
T ss_pred HCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccC-CC-----C--------------C-
Confidence 99999999999999999999999999999999999998653 677788888763 11 0 0
Q ss_pred CCcHHHHHHHHHHHHHccCCchhhhhhhcchHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHhccccceeee
Q 048746 606 VGDHIALLRVYNSWRECNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEVTSNLNDLDAIKKAITSGFFPHSAKL 685 (755)
Q Consensus 606 ~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~~~~~~~~~~~i~~~l~~g~~~nvA~~ 685 (755)
.+|....+..+. ..|+ +.+.++.+|+.... + ..+.+.+..+|++||+++||++
T Consensus 454 ~~d~~~~l~~~~--------~~~~----------~~~~~~~~~~~~~~---~------~~~~~~~~~~la~aypdriA~~ 506 (812)
T PRK11664 454 SSDLGVALSRKQ--------PHWQ----------QRAQQLLKRLNVRG---G------EADSSLIAPLLALAFPDRIARR 506 (812)
T ss_pred cccHHHHHHHHH--------HHHH----------HHHHHHHHHHHhhc---c------cCChHHHHHHHHHHCHHHHhhh
Confidence 145433333221 1332 33455555553321 1 1133458889999999999987
Q ss_pred ccC-CCeeeeecCceEEECCCCCCccCCCceEEEEeeecCh-h--hhhhhccccCHHHHHhHccccccccc
Q 048746 686 QKN-GSYWTVKHPQRVHIHPSSGLAQVLPRWVVYHELVLTT-K--EYMRQVTELKPEWLVEIAPHYYQLKD 752 (755)
Q Consensus 686 ~~~-g~y~~~~~~~~v~iHPsS~l~~~~p~~vvy~el~~t~-k--~yir~vt~I~~~wL~~~ap~~~~~~~ 752 (755)
+++ |.|. +.+|+.+++||+|.|.+ .+|+|+.+++.++ + ..|+.+++|+++||.+++|+.+..++
T Consensus 507 r~~~~~~~-l~~G~~a~l~~~~~l~~--~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l~~~~~~~~~~~~ 574 (812)
T PRK11664 507 RGQDGRYQ-LANGMGAMLDADDALSR--HEWLIAPLLLQGSASPDARILLALPLDIDELVQRCPQLVQQSD 574 (812)
T ss_pred cCCCCeEE-eeCCCeEEECCCCcccC--CCeEEEEEhhccCccccceeeEeeccCHHHHHHHHHHhceeee
Confidence 654 4455 78999999999999987 6999999997653 3 46889999999999999999987654
No 12
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=7.6e-59 Score=528.79 Aligned_cols=392 Identities=23% Similarity=0.317 Sum_probs=310.8
Q ss_pred hHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHh-----ccc---------CCCccccCccHHHHHHHHHHHHHHH
Q 048746 133 YPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEA-----GYT---------KQGKVGCTQPRRVAAMSVAARVSQE 198 (755)
Q Consensus 133 ~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~-----~~~---------~~~~ilv~~P~r~la~q~a~~~~~~ 198 (755)
-.+|+++++.+.+++++|++|+||||||+++|+++++. ++. ..++++|++|||+||.|++.++.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999998763 111 2358999999999999999999887
Q ss_pred hCCccccEEeeeeeccccCC-------CCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh
Q 048746 199 MGVKLGHEVGYSIRFEDCTS-------EKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK 271 (755)
Q Consensus 199 ~~~~~g~~vg~~~~~~~~~~-------~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~ 271 (755)
.|......+...+++..... ...+|+++|++.. .+.+.++++|||||||||...+|+++.+++.+..
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~------l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~ 319 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT------LNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHID 319 (675)
T ss_pred hCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc------ccccccCCEEEccccccCccchhHHHHHHHHhhh
Confidence 66432111222333332221 2457999998742 2468899999999999999999999888876643
Q ss_pred cCCCcEEEEeccCC--CHHHHHhhhCCCCEEEecCcc-ccceEEEecCCc-----cchHHHHHHHHHHHHh---hCCCCC
Q 048746 272 FRSDLKLLISSATL--DAEKFSDYFGSAPIFKIPGRR-YPVEIHYTKAPE-----ADYIDAAIVTVLQIHV---TQSPGD 340 (755)
Q Consensus 272 ~~~~~~~il~SAT~--~~~~l~~~~~~~~~~~~~~~~-~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~ 340 (755)
. ..|+++||||+ +.+.+.+||++++.+.++++. +|++++|..... .++.......++..+. ...+++
T Consensus 320 ~--~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~ 397 (675)
T PHA02653 320 K--IRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSS 397 (675)
T ss_pred h--cCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCc
Confidence 2 24899999999 466889999989999999985 999999975432 1222222222222222 123579
Q ss_pred EEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCC-CCCCcEEEEeCCcccccCcCCCeeEE
Q 048746 341 ILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPT-PEGARKVVLATNIAETSLTIDGIKYV 419 (755)
Q Consensus 341 iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f-~~g~~~vlvaT~i~~~Gidip~v~~V 419 (755)
+||||||+++++.+++.|.+.. +++.+.++||+|++.+ ++++.| ++|+++||||||+||||||||+|++|
T Consensus 398 iLVFlpg~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~e--q~l~~ff~~gk~kILVATdIAERGIDIp~V~~V 468 (675)
T PHA02653 398 GIVFVASVSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNID--EILEKVYSSKNPSIIISTPYLESSVTIRNATHV 468 (675)
T ss_pred EEEEECcHHHHHHHHHHHHhhc-------CCceEEeccCCcCHHH--HHHHHHhccCceeEEeccChhhccccccCeeEE
Confidence 9999999999999999998753 2478999999999864 444454 68999999999999999999999999
Q ss_pred EeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCccccccCCCCCccchhccC---chHHHHH
Q 048746 420 IDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYHKDMDDNTVPEIQRTN---LANVVLI 496 (755)
Q Consensus 420 Id~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~~~l~~~~~pei~r~~---l~~~~L~ 496 (755)
||+|+.+.+. +..|++. |+|.++|.||+|||||.++|.||+||+++++ .| |.+.+ |.+++|+
T Consensus 469 ID~G~~k~p~--~~~g~~~----~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~--------~p-I~ri~~~~L~~~vL~ 533 (675)
T PHA02653 469 YDTGRVYVPE--PFGGKEM----FISKSMRTQRKGRVGRVSPGTYVYFYDLDLL--------KP-IKRIDSEFLHNYILY 533 (675)
T ss_pred EECCCccCCC--cccCccc----ccCHHHHHHhccCcCCCCCCeEEEEECHHHh--------HH-HHHHhHHHHHHHHHH
Confidence 9999877663 5556543 9999999999999999999999999998763 23 56655 8999999
Q ss_pred HHHcCCCCCCcCCCCCCCcHHHHHHHHHHHHHccCccCCCCCCHH--HHHhhcCCCChhhHHHHHhccc
Q 048746 497 LKSLGIDDLVNFDFIDPPPEEALLKALELLFALSALNKLGELTKV--GRRMAEFPLDPMLSKMIVASDK 563 (755)
Q Consensus 497 l~~~~~~~~~~~~~~~~p~~~~i~~a~~~L~~~g~l~~~~~lT~l--G~~~~~~pl~p~~~~~l~~~~~ 563 (755)
+++||++.. .+.|+|||+.+++..|++.|..+||+|+ +||.+ |+.++.+ +.||+++.|..
T Consensus 534 lk~~g~~~~-~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~ 595 (675)
T PHA02653 534 AKYFNLTLP-EDLFVIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGI 595 (675)
T ss_pred HHHcCCCCc-ccccCCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccH
Confidence 999999644 4559999999999999999999998855 79999 9999998 99999987754
No 13
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=3.9e-60 Score=516.44 Aligned_cols=624 Identities=30% Similarity=0.487 Sum_probs=515.9
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCC----ccccCccHHHHHHHHHH
Q 048746 118 SALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQG----KVGCTQPRRVAAMSVAA 193 (755)
Q Consensus 118 ~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~----~ilv~~P~r~la~q~a~ 193 (755)
..+..+.+.+..+|+..+..+++.++..+++++|.+.||+|||+++.+++++....++. .+.+.+|||..++.+++
T Consensus 365 ~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiae 444 (1282)
T KOG0921|consen 365 EALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAE 444 (1282)
T ss_pred cchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHH
Confidence 44567778899999999999999999999999999999999999999999997554332 68899999999999999
Q ss_pred HHHHHhCCccccEEeeeeeccccCC-CCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhc
Q 048746 194 RVSQEMGVKLGHEVGYSIRFEDCTS-EKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKF 272 (755)
Q Consensus 194 ~~~~~~~~~~g~~vg~~~~~~~~~~-~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~ 272 (755)
+|+.+.+..+|.+|||++|+++..+ +...|.+||.|.+++.+.+. +..++++|+||.|||..++||++.+++.+...
T Consensus 445 rva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr~m~~t 522 (1282)
T KOG0921|consen 445 RVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLREMIST 522 (1282)
T ss_pred HHHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHHhhhcc
Confidence 9999999999999999999998876 45678999999999987554 67899999999999999999999999999999
Q ss_pred CCCcEEEEeccCCCHHHHHhhhCCCCEEEecCccccceEEEecC--------------------------Cccc------
Q 048746 273 RSDLKLLISSATLDAEKFSDYFGSAPIFKIPGRRYPVEIHYTKA--------------------------PEAD------ 320 (755)
Q Consensus 273 ~~~~~~il~SAT~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~--------------------------~~~~------ 320 (755)
.+++++++||||+|.+.|..||..+|...+.++.+|+..+|... +..+
T Consensus 523 y~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n 602 (1282)
T KOG0921|consen 523 YRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMN 602 (1282)
T ss_pred chhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccc
Confidence 99999999999999999999999999999999999887665310 0000
Q ss_pred ------h----------------HHHHHHHHHH-HHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEec
Q 048746 321 ------Y----------------IDAAIVTVLQ-IHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPI 377 (755)
Q Consensus 321 ------~----------------~~~~~~~~~~-~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~l 377 (755)
+ .-..+..++. +....-.|-|+||+++...+-.+...|..... -.+.....++++
T Consensus 603 ~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~--fg~~~~y~ilp~ 680 (1282)
T KOG0921|consen 603 ILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQE--FGQANKYEILPL 680 (1282)
T ss_pred cccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhh--hccchhcccccc
Confidence 0 0001111111 22223358899999999999999998876432 223345789999
Q ss_pred cCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccC
Q 048746 378 YANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSG 457 (755)
Q Consensus 378 h~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaG 457 (755)
|+.++..++.++++..+.|..++|++|++++++++|.++.+|||.+..+.+.|-....+....+.|.|+-+..||.||+|
T Consensus 681 Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~g 760 (1282)
T KOG0921|consen 681 HSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAG 760 (1282)
T ss_pred hhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEeccCccccccCCCCCccchhccCchHHHHHHHHcCCCCCCcC--CCCCCCcHHHHHHHHHHHHHccCccCC
Q 048746 458 RTGPGKCFRLYTLHNYHKDMDDNTVPEIQRTNLANVVLILKSLGIDDLVNF--DFIDPPPEEALLKALELLFALSALNKL 535 (755)
Q Consensus 458 R~g~G~~~~l~~~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~--~~~~~p~~~~i~~a~~~L~~~g~l~~~ 535 (755)
|..+|.|+++.+...| ..+.++..||+.+.++.+..|..|.+.+..+..| ..+.||+.+++..+-..|..++++|.+
T Consensus 761 rvR~G~~f~lcs~arF-~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n 839 (1282)
T KOG0921|consen 761 RVRPGFCFHLCSRARF-EALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDAN 839 (1282)
T ss_pred eecccccccccHHHHH-HHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhcc
Confidence 9999999999999988 5789999999999999999998887665555544 678999999999999999999999999
Q ss_pred CCCCHHHHHhhcCCCChhhHHHHHhcccccchHHHHhhhcccccccccccCCcchHHHHHHHHhcccCCCCCcHHHHHHH
Q 048746 536 GELTKVGRRMAEFPLDPMLSKMIVASDKDKCSDEIITIAAMLSVGNSIFYRPKDKQVHADNARMNFHLGNVGDHIALLRV 615 (755)
Q Consensus 536 ~~lT~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~~~f~~~~~~~~~~~~~~~~f~~~~~~D~~~~l~~ 615 (755)
+.+|++|+.++.+|+.|.+++|++.+..++|..-|+.+|+.+|...+.|-+-+.... ....++.|++..+|||.+...+
T Consensus 840 ~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~r-l~g~q~~~~g~kfsdhva~~~v 918 (1282)
T KOG0921|consen 840 DELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSR-LSGTQRKFAGNKFSDHVAIVSV 918 (1282)
T ss_pred CcccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccc-cccchhhccccccccchhhhhh
Confidence 999999999999999999999999999999999999999998885443332222211 1223445665555666555555
Q ss_pred -----HHHHHHccCCchhhhhhhcchHHHHHHHHHHHHHHHHHHhcccc--------ccCC--CCcHHHHHHHHHhcccc
Q 048746 616 -----YNSWRECNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIE--------VTSN--LNDLDAIKKAITSGFFP 680 (755)
Q Consensus 616 -----~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~--------~~~~--~~~~~~i~~~l~~g~~~ 680 (755)
++.|..+.-..+||....++.+.|+.....+.||..+|+...++ .+.| +.+....+.+||.+.||
T Consensus 919 ~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l~~~~~lL~~~lyp 998 (1282)
T KOG0921|consen 919 IQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNGPDRELNLMRSLLVMALYP 998 (1282)
T ss_pred hhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCCCCchhHHHHHHHHhhcCC
Confidence 55555554567899999999999999999999999998865432 1112 22345677889999999
Q ss_pred ceeeeccCCCeeeeecCceEEECCCCCCc-------cCCCceEEEEeeecChhhhhhhccccCHHHHHhHccccc
Q 048746 681 HSAKLQKNGSYWTVKHPQRVHIHPSSGLA-------QVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEIAPHYY 748 (755)
Q Consensus 681 nvA~~~~~g~y~~~~~~~~v~iHPsS~l~-------~~~p~~vvy~el~~t~k~yir~vt~I~~~wL~~~ap~~~ 748 (755)
|+|.+....+-.|+ .+....||-.|++. +.+.+|+||.|.+.|...-.++.|-|+|-.|+.++..-.
T Consensus 999 n~~~y~ekrkvLtT-e~~~alihk~Svncp~S~qdM~fPsPFFVFGEKIRTRAIS~K~MslVsPLQLLLF~SrKV 1072 (1282)
T KOG0921|consen 999 NVAYYVEKRKVLTT-EQSSALIHKYSVNCPNSRQEMDFPSPFFVFGEKIRTRAISCKQMSLVSPLQLLLFGSRKV 1072 (1282)
T ss_pred ccceeccceeEEee-cchhhhhhhhcccCCCcccccCCCCceeeechhhhhheecccCccccChHHHhhhhhhhc
Confidence 99987766555553 44456777777654 134599999999999999999999999999998876543
No 14
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.2e-54 Score=431.67 Aligned_cols=335 Identities=22% Similarity=0.249 Sum_probs=279.1
Q ss_pred ccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccC
Q 048746 104 DELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCT 181 (755)
Q Consensus 104 ~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~ 181 (755)
.+...+|.++++.+.+++++++.++..| +++|.++||.+..|+++|+.|+|||||| |.+|.+-......+...++|+
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~P-T~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVL 135 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKP-TKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVL 135 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCC-chhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEe
Confidence 3456789999999999999999999999 9999999999999999999999999999 777755333323334589999
Q ss_pred ccHHHHHHHHHHHHHHHhCCccccEEeeeeeccc------cCCCCceEEEeCcHHHHHHHhCCC--CCCCCCceEeeccc
Q 048746 182 QPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED------CTSEKTILKYMTDGMLLREILSEP--NLESYSVLMVDEAH 253 (755)
Q Consensus 182 ~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~------~~~~~~~I~v~T~g~Ll~~l~~~~--~l~~~~~vIiDEaH 253 (755)
+|||+||.|+++.+.. +|...|..+...+++.+ ....+.+|+|+|||+|.+++.+.. .+.+++++|+||||
T Consensus 136 tPtRELA~QI~e~fe~-Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD 214 (476)
T KOG0330|consen 136 TPTRELAQQIAEQFEA-LGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD 214 (476)
T ss_pred cCcHHHHHHHHHHHHH-hccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH
Confidence 9999999999988876 66555555443333332 234678999999999999997543 78999999999999
Q ss_pred ccCCccchHHHHHHHHHhcCCCcEEEEeccCC--CHHHHHhhhCCCCEEEecCccc----cceEEEecCCccchHHHHHH
Q 048746 254 ERTLSTDILFGLLKDLIKFRSDLKLLISSATL--DAEKFSDYFGSAPIFKIPGRRY----PVEIHYTKAPEADYIDAAIV 327 (755)
Q Consensus 254 er~~~~d~~~~~l~~~~~~~~~~~~il~SAT~--~~~~l~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~ 327 (755)
|.+++||...+-+++...+.+.|++++|||| .+.++..--...|+-......| .+.++|...+..+...
T Consensus 215 -rlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~---- 289 (476)
T KOG0330|consen 215 -RLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDT---- 289 (476)
T ss_pred -hhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccch----
Confidence 9999999999888888899999999999999 4556665544555544443333 3577777776654433
Q ss_pred HHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcc
Q 048746 328 TVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIA 407 (755)
Q Consensus 328 ~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~ 407 (755)
.++.+.....++.+||||++...++.++-.|+..+ +.+.++||.|++..|..+++.|++|.+.||||||++
T Consensus 290 yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg---------~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVa 360 (476)
T KOG0330|consen 290 YLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLG---------FQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVA 360 (476)
T ss_pred hHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcC---------cceecccchhhHHHHHHHHHHHhccCCcEEEecchh
Confidence 33333444557899999999999999999999854 889999999999999999999999999999999999
Q ss_pred cccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCcc
Q 048746 408 ETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHN 472 (755)
Q Consensus 408 ~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~ 472 (755)
+||+|||.|++|||||+ |.+..+|+||+||+||.| +|+++.|++..+
T Consensus 361 SRGLDip~Vd~VVNyDi------------------P~~skDYIHRvGRtaRaGrsG~~ItlVtqyD 408 (476)
T KOG0330|consen 361 SRGLDIPHVDVVVNYDI------------------PTHSKDYIHRVGRTARAGRSGKAITLVTQYD 408 (476)
T ss_pred cccCCCCCceEEEecCC------------------CCcHHHHHHHcccccccCCCcceEEEEehhh
Confidence 99999999999999999 999999999999999999 699999999743
No 15
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4.6e-53 Score=440.25 Aligned_cols=368 Identities=19% Similarity=0.223 Sum_probs=304.6
Q ss_pred CCCcCCCCCccccccchhhhhhcc--ccCCCCcccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEE
Q 048746 73 SKNKNQSNDYEYVFEDKIDFIRDS--VIDGENLDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLV 150 (755)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vi 150 (755)
.+|+.++...+|..++|..|.++. .++|...|.|+.+|++.+++..+++.|++.++..| +|+|.++++...+++++|
T Consensus 208 drhW~~k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~ep-tpIqR~aipl~lQ~rD~i 286 (673)
T KOG0333|consen 208 DRHWSEKVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEP-TPIQRQAIPLGLQNRDPI 286 (673)
T ss_pred ccchhhhhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCC-chHHHhhccchhccCCee
Confidence 456677777888899999999876 45699999999999999999999999999999999 999999999999999999
Q ss_pred EEccCCCchh--ccHHHHHHHhccc---------CCCccccCccHHHHHHHHHHHHHH---HhCCccccEEeeeeeccc-
Q 048746 151 IVGETGSGKT--TQIPQYLHEAGYT---------KQGKVGCTQPRRVAAMSVAARVSQ---EMGVKLGHEVGYSIRFED- 215 (755)
Q Consensus 151 i~apTGsGKT--~~ip~~l~~~~~~---------~~~~ilv~~P~r~la~q~a~~~~~---~~~~~~g~~vg~~~~~~~- 215 (755)
.+|+|||||| +.+|+++...... .++..++++|||+||.|+...-.+ .+|.++...+|.....+.
T Consensus 287 gvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~ 366 (673)
T KOG0333|consen 287 GVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQG 366 (673)
T ss_pred eEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhh
Confidence 9999999999 7788776654332 356899999999999999765443 344444455664433333
Q ss_pred -cCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCCccchHHHHHHHHHhcCC-------------------
Q 048746 216 -CTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRS------------------- 274 (755)
Q Consensus 216 -~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~------------------- 274 (755)
..+.++.|+++|||+|++.|.+.. .++++.+||+|||+ |+++++|...+.+++...+.
T Consensus 367 fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldead-rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~ 445 (673)
T KOG0333|consen 367 FQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEAD-RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKN 445 (673)
T ss_pred hhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchh-hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhh
Confidence 456799999999999999886544 68999999999999 99999999999998876541
Q ss_pred ------CcEEEEeccCCC--HHHHHhhhCCCCEEEecCc---cc-cceEEEecCCccchHHHHHHHHHHHHhhCCCCCEE
Q 048746 275 ------DLKLLISSATLD--AEKFSDYFGSAPIFKIPGR---RY-PVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDIL 342 (755)
Q Consensus 275 ------~~~~il~SAT~~--~~~l~~~~~~~~~~~~~~~---~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 342 (755)
-.+.++||||++ ++.+++-+...|++...|. .. .+++.+......+... .+..+.......++|
T Consensus 446 ~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~k----kL~eil~~~~~ppiI 521 (673)
T KOG0333|consen 446 FSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRK----KLIEILESNFDPPII 521 (673)
T ss_pred cccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHH----HHHHHHHhCCCCCEE
Confidence 168999999994 4667665555666544433 33 3556655555544444 444444444578999
Q ss_pred EEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeC
Q 048746 343 VFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDP 422 (755)
Q Consensus 343 VF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~ 422 (755)
||+|+++.|+.+++.|.+.+ +.++.|||+-++++|+.++..|++|...|+||||+|+||||||+|.+||||
T Consensus 522 IFvN~kk~~d~lAk~LeK~g---------~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlViny 592 (673)
T KOG0333|consen 522 IFVNTKKGADALAKILEKAG---------YKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINY 592 (673)
T ss_pred EEEechhhHHHHHHHHhhcc---------ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeec
Confidence 99999999999999999854 899999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEeccCccc
Q 048746 423 GFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTLHNY 473 (755)
Q Consensus 423 g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~~~~ 473 (755)
++ +.|+.+|+||+||+||+|. |.++.|+++++-
T Consensus 593 dm------------------aksieDYtHRIGRTgRAGk~GtaiSflt~~dt 626 (673)
T KOG0333|consen 593 DM------------------AKSIEDYTHRIGRTGRAGKSGTAISFLTPADT 626 (673)
T ss_pred ch------------------hhhHHHHHHHhccccccccCceeEEEeccchh
Confidence 99 9999999999999999995 999999999873
No 16
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-51 Score=443.27 Aligned_cols=334 Identities=22% Similarity=0.266 Sum_probs=274.9
Q ss_pred cCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhc------ccCCCcccc
Q 048746 109 ELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAG------YTKQGKVGC 180 (755)
Q Consensus 109 ~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~------~~~~~~ilv 180 (755)
.|.++++++.....++..++..| +++|.+.++.+..|++++.+|.|||||| |++|.+.+... ...++.+||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~P-tpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKP-TPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCC-chhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 78899999999999999999999 9999999999999999999999999999 99998876553 223458999
Q ss_pred CccHHHHHHHHHHHHHHHhCCccc----cEEeeeeecc--ccCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeeccc
Q 048746 181 TQPRRVAAMSVAARVSQEMGVKLG----HEVGYSIRFE--DCTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAH 253 (755)
Q Consensus 181 ~~P~r~la~q~a~~~~~~~~~~~g----~~vg~~~~~~--~~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaH 253 (755)
++||||||.|+.+.+.+ ++..++ ...|...... .....+.+|+|+|||+|++++.... .|++++|+|+||||
T Consensus 171 L~PTRELA~QV~~~~~~-~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD 249 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEARE-FGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD 249 (519)
T ss_pred EcCcHHHHHHHHHHHHH-HcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH
Confidence 99999999999977666 554444 2222111111 1123568999999999999997654 89999999999999
Q ss_pred ccCCccchHHHHHHHHHhc-CCCcEEEEeccCC--CHHHHHhhhCCCCEEEecCc------cccceEEEecCCccchHHH
Q 048746 254 ERTLSTDILFGLLKDLIKF-RSDLKLLISSATL--DAEKFSDYFGSAPIFKIPGR------RYPVEIHYTKAPEADYIDA 324 (755)
Q Consensus 254 er~~~~d~~~~~l~~~~~~-~~~~~~il~SAT~--~~~~l~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~ 324 (755)
||++++|...+.+++.+. +++.|++++|||+ .+..|++-|...|+....+. ...+.+....++...+ ..
T Consensus 250 -rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K-~~ 327 (519)
T KOG0331|consen 250 -RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAK-LR 327 (519)
T ss_pred -hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHH-HH
Confidence 999999999999999998 6777899999999 45678777666766554443 2234444444443333 33
Q ss_pred HHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeC
Q 048746 325 AIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLAT 404 (755)
Q Consensus 325 ~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT 404 (755)
.+..++.......++++||||++++.|++++..|+... +.+.++||+.++.+|..+++.|++|+..|||||
T Consensus 328 ~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~---------~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVAT 398 (519)
T KOG0331|consen 328 KLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKG---------WPAVAIHGDKSQSERDWVLKGFREGKSPVLVAT 398 (519)
T ss_pred HHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcC---------cceeeecccccHHHHHHHHHhcccCCcceEEEc
Confidence 33344444445668999999999999999999998743 789999999999999999999999999999999
Q ss_pred CcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 405 NIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 405 ~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
|+|+||||||+|++||||++ |.+.++|+||+|||||.| .|.+|.||+..++
T Consensus 399 dVAaRGLDi~dV~lVInydf------------------P~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~ 450 (519)
T KOG0331|consen 399 DVAARGLDVPDVDLVINYDF------------------PNNVEDYVHRIGRTGRAGKKGTAITFFTSDNA 450 (519)
T ss_pred ccccccCCCccccEEEeCCC------------------CCCHHHHHhhcCccccCCCCceEEEEEeHHHH
Confidence 99999999999999999999 999999999999999988 5999999998766
No 17
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.3e-48 Score=444.28 Aligned_cols=344 Identities=21% Similarity=0.244 Sum_probs=269.2
Q ss_pred cCCCCcccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcc---
Q 048746 98 IDGENLDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGY--- 172 (755)
Q Consensus 98 ~~g~~~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~--- 172 (755)
+.|...|.++.+|.++++++.+++.|.+.++..| +++|.++++.+.+++++|++|||||||| +++|.+......
T Consensus 120 ~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p-t~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~ 198 (545)
T PTZ00110 120 IAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEP-TPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL 198 (545)
T ss_pred ecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc
Confidence 3688899999999999999999999999999999 9999999999999999999999999999 667766543211
Q ss_pred --cCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccc------cCCCCceEEEeCcHHHHHHHhCC-CCCCC
Q 048746 173 --TKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED------CTSEKTILKYMTDGMLLREILSE-PNLES 243 (755)
Q Consensus 173 --~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~------~~~~~~~I~v~T~g~Ll~~l~~~-~~l~~ 243 (755)
..++.+||++|||+||.|+.+.+.+ ++...+..+........ ......+|+|+|||+|++.+... ..+.+
T Consensus 199 ~~~~gp~~LIL~PTreLa~Qi~~~~~~-~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~ 277 (545)
T PTZ00110 199 RYGDGPIVLVLAPTRELAEQIREQCNK-FGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRR 277 (545)
T ss_pred cCCCCcEEEEECChHHHHHHHHHHHHH-HhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhh
Confidence 1245799999999999999987776 44332222211111111 11245789999999999998765 37899
Q ss_pred CCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCCH--HHHHhhhC-CCCEEEecCc-----cccceEEEec
Q 048746 244 YSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLDA--EKFSDYFG-SAPIFKIPGR-----RYPVEIHYTK 315 (755)
Q Consensus 244 ~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~--~~l~~~~~-~~~~~~~~~~-----~~~v~~~~~~ 315 (755)
+++||||||| ++++.+|...+.+.+...+++.|++++|||++. +.+++.+. ..++....+. ...+...+..
T Consensus 278 v~~lViDEAd-~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~ 356 (545)
T PTZ00110 278 VTYLVLDEAD-RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFV 356 (545)
T ss_pred CcEEEeehHH-hhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEE
Confidence 9999999999 899999988888887778899999999999943 45555443 3444322221 1223333333
Q ss_pred CCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCC
Q 048746 316 APEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPE 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~ 395 (755)
....+..... ..++..... ..+++||||++++.++.++..|... ++.+..+||++++++|..+++.|++
T Consensus 357 ~~~~~k~~~L-~~ll~~~~~-~~~k~LIF~~t~~~a~~l~~~L~~~---------g~~~~~ihg~~~~~eR~~il~~F~~ 425 (545)
T PTZ00110 357 VEEHEKRGKL-KMLLQRIMR-DGDKILIFVETKKGADFLTKELRLD---------GWPALCIHGDKKQEERTWVLNEFKT 425 (545)
T ss_pred EechhHHHHH-HHHHHHhcc-cCCeEEEEecChHHHHHHHHHHHHc---------CCcEEEEECCCcHHHHHHHHHHHhc
Confidence 3332222222 222222111 4679999999999999999999863 3678899999999999999999999
Q ss_pred CCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 396 GARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 396 g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
|+.+|||||+++++|||||+|++||++|+ |.+.++|+||+|||||.| .|.||.|+++.+.
T Consensus 426 G~~~ILVaTdv~~rGIDi~~v~~VI~~d~------------------P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 426 GKSPIMIATDVASRGLDVKDVKYVINFDF------------------PNQIEDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred CCCcEEEEcchhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEEECcchH
Confidence 99999999999999999999999999999 999999999999999998 5999999998654
No 18
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=9.3e-47 Score=445.61 Aligned_cols=463 Identities=20% Similarity=0.240 Sum_probs=323.4
Q ss_pred cCCCCccchHHHHHHHHHhcCCCChHHHHHHHHH-HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHH
Q 048746 109 ELPDKSKEKSALEMLQEERKTLPIYPYRDELLQA-VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVA 187 (755)
Q Consensus 109 ~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~-i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~l 187 (755)
.|+++++++.+++.+.+.+...| +++|.++++. +.++++++++||||||||..+...++... .++++++|++|+|+|
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l-~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l-~~~~kal~i~P~raL 79 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEEL-YPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAI-ARGGKALYIVPLRAL 79 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcC-CHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHH-hcCCcEEEEeChHHH
Confidence 57788899999999988777766 9999999998 78899999999999999966554444432 246799999999999
Q ss_pred HHHHHHHHHHH--hCCccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCC-CCCCCCCceEeecccccCCccc---h
Q 048746 188 AMSVAARVSQE--MGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSE-PNLESYSVLMVDEAHERTLSTD---I 261 (755)
Q Consensus 188 a~q~a~~~~~~--~~~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~-~~l~~~~~vIiDEaHer~~~~d---~ 261 (755)
|.|+++++.+. +|.+++...|... .........+|+|+||+.+...+.+. .++.++++|||||+| ...+.+ .
T Consensus 80 a~q~~~~~~~~~~~g~~v~~~tGd~~-~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H-~l~d~~rg~~ 157 (737)
T PRK02362 80 ASEKFEEFERFEELGVRVGISTGDYD-SRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVH-LIDSANRGPT 157 (737)
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCcC-ccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcc-ccCCCcchHH
Confidence 99999999863 1444444444211 11111245789999999998877654 368899999999999 443333 3
Q ss_pred HHHHHHHHHhcCCCcEEEEeccCC-CHHHHHhhhCCCCEEEecCccccceEEEecC-----C-ccc-----hHHHHHHHH
Q 048746 262 LFGLLKDLIKFRSDLKLLISSATL-DAEKFSDYFGSAPIFKIPGRRYPVEIHYTKA-----P-EAD-----YIDAAIVTV 329 (755)
Q Consensus 262 ~~~~l~~~~~~~~~~~~il~SAT~-~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~-----~-~~~-----~~~~~~~~~ 329 (755)
+..++.++....++.|+|+||||+ +.+.+++|++.. .+....|+.++....... + ... ........+
T Consensus 158 le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (737)
T PRK02362 158 LEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAE-LVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLV 236 (737)
T ss_pred HHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCC-cccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHH
Confidence 344455555567889999999999 889999998743 222233333333221100 0 000 002222333
Q ss_pred HHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhccc-------------------CC-C-------CCceEEEeccCCCC
Q 048746 330 LQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGL-------------------GS-K-------IAELIICPIYANLP 382 (755)
Q Consensus 330 ~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~-------------------~~-~-------~~~~~v~~lh~~l~ 382 (755)
.... ..++++||||+++++++.++..|....... .. . .-...+..+||+|+
T Consensus 237 ~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~ 314 (737)
T PRK02362 237 LDTL--EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLS 314 (737)
T ss_pred HHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCC
Confidence 3322 246899999999999999999887643210 00 0 00135788999999
Q ss_pred HHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC--
Q 048746 383 TELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-- 460 (755)
Q Consensus 383 ~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-- 460 (755)
+++|..+++.|++|.++|||||+++++|||+|++++||+ ....||+..|. .|.+..+|.||+|||||.|
T Consensus 315 ~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~----~~~~yd~~~g~-----~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 315 REHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIR----DYRRYDGGAGM-----QPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred HHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEe----cceeecCCCCc-----eeCCHHHHHHHhhcCCCCCCC
Confidence 999999999999999999999999999999999999994 45678776553 2899999999999999998
Q ss_pred -CCEEEEeccCcc-----ccccCCCCCccchhcc------CchHHHHHHHHcCCC----CCCcC---CCCCCC------c
Q 048746 461 -PGKCFRLYTLHN-----YHKDMDDNTVPEIQRT------NLANVVLILKSLGID----DLVNF---DFIDPP------P 515 (755)
Q Consensus 461 -~G~~~~l~~~~~-----~~~~l~~~~~pei~r~------~l~~~~L~l~~~~~~----~~~~~---~~~~~p------~ 515 (755)
.|.|+.+....+ +...+. ..|+-..+ .|...++...+.|.. ++.+| .|+..+ .
T Consensus 386 ~~G~~ii~~~~~~~~~~~~~~~l~--~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l 463 (737)
T PRK02362 386 PYGEAVLLAKSYDELDELFERYIW--ADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRL 463 (737)
T ss_pred CCceEEEEecCchhHHHHHHHHHh--CCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHH
Confidence 399999987542 111111 12332222 244455555555531 12111 333222 3
Q ss_pred HHHHHHHHHHHHHccCccCCCC---CCHHHHHhhcCCCChhhHHHHHhccccc---chHHHHhhhcccccccccccCCcc
Q 048746 516 EEALLKALELLFALSALNKLGE---LTKVGRRMAEFPLDPMLSKMIVASDKDK---CSDEIITIAAMLSVGNSIFYRPKD 589 (755)
Q Consensus 516 ~~~i~~a~~~L~~~g~l~~~~~---lT~lG~~~~~~pl~p~~~~~l~~~~~~~---c~~~~~~i~a~ls~~~~~f~~~~~ 589 (755)
.+.+..+++.|.+.|+|+.+++ +|++|+++++++++|..+..+..+.... ....++.++|.....+.+.+++.+
T Consensus 464 ~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e 543 (737)
T PRK02362 464 ERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYELYLRSGD 543 (737)
T ss_pred HHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCccccccccChhH
Confidence 4568999999999999987764 9999999999999999999998876543 334567666655554555555443
No 19
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-47 Score=428.38 Aligned_cols=332 Identities=20% Similarity=0.290 Sum_probs=270.0
Q ss_pred ccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhc-ccCCCc-cccCcc
Q 048746 108 SELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAG-YTKQGK-VGCTQP 183 (755)
Q Consensus 108 ~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~-~~~~~~-ilv~~P 183 (755)
.+|.++++++.+++++.+.++..| +++|.++||.+..|+++++.|+|||||| |.+|.+-.... ...... ++|++|
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~p-t~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~P 107 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEP-TPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAP 107 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECC
Confidence 679999999999999999999999 9999999999999999999999999999 77776644221 111112 899999
Q ss_pred HHHHHHHHHHHHHHHhC----CccccEEeeeeecc--ccCCCCceEEEeCcHHHHHHHhCC-CCCCCCCceEeecccccC
Q 048746 184 RRVAAMSVAARVSQEMG----VKLGHEVGYSIRFE--DCTSEKTILKYMTDGMLLREILSE-PNLESYSVLMVDEAHERT 256 (755)
Q Consensus 184 ~r~la~q~a~~~~~~~~----~~~g~~vg~~~~~~--~~~~~~~~I~v~T~g~Ll~~l~~~-~~l~~~~~vIiDEaHer~ 256 (755)
||+||.|+++.+..... ..+...+|...... .....+.+|+|+|||+|++++... ..+.++.++|+|||| |+
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rm 186 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RM 186 (513)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hh
Confidence 99999999987766322 22223333211000 111225899999999999999776 479999999999999 99
Q ss_pred CccchHHHHHHHHHhcCCCcEEEEeccCCCH--HHHHhhhCCCCE-EEecC-----ccccceEEEecCCccchHHHHHHH
Q 048746 257 LSTDILFGLLKDLIKFRSDLKLLISSATLDA--EKFSDYFGSAPI-FKIPG-----RRYPVEIHYTKAPEADYIDAAIVT 328 (755)
Q Consensus 257 ~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~--~~l~~~~~~~~~-~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~ 328 (755)
++++|...+.+++...+++.|++++|||++. ..++.-+...|. +.+.. ....++++|......+ .....
T Consensus 187 Ld~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~---~k~~~ 263 (513)
T COG0513 187 LDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE---EKLEL 263 (513)
T ss_pred hcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH---HHHHH
Confidence 9999999999999888889999999999954 355554555554 33331 2345777777776544 23345
Q ss_pred HHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCccc
Q 048746 329 VLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAE 408 (755)
Q Consensus 329 ~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~ 408 (755)
+..+......+++||||+++..++.++..|...+ +.+..+||+|++++|.++++.|++|..+||||||+++
T Consensus 264 L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g---------~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaa 334 (513)
T COG0513 264 LLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRG---------FKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAA 334 (513)
T ss_pred HHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCC---------CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhh
Confidence 5555555556789999999999999999999854 8899999999999999999999999999999999999
Q ss_pred ccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEeccCc
Q 048746 409 TSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTLH 471 (755)
Q Consensus 409 ~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~~ 471 (755)
||||||+|.+|||||+ |.+.++|+||+||+||.|. |.++.|+++.
T Consensus 335 RGiDi~~v~~VinyD~------------------p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 335 RGLDIPDVSHVINYDL------------------PLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred ccCCccccceeEEccC------------------CCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 9999999999999999 9999999999999999995 9999999974
No 20
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=4.7e-46 Score=436.83 Aligned_cols=451 Identities=18% Similarity=0.199 Sum_probs=311.4
Q ss_pred cCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHH
Q 048746 109 ELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAA 188 (755)
Q Consensus 109 ~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la 188 (755)
+|+++++++..++.+.+.++. ++++|.++++.+.++++++++||||||||.++...+++.. ..++++++++|+|+||
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~--l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l-~~~~k~v~i~P~raLa 78 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE--LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETF-LAGLKSIYIVPLRSLA 78 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC--CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHH-HhCCcEEEEechHHHH
Confidence 466778888988888776655 5999999999999999999999999999987776666553 3356899999999999
Q ss_pred HHHHHHHHHHhCCccccEEeeeeeccc---cCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCCccc---h
Q 048746 189 MSVAARVSQEMGVKLGHEVGYSIRFED---CTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTLSTD---I 261 (755)
Q Consensus 189 ~q~a~~~~~~~~~~~g~~vg~~~~~~~---~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~~~d---~ 261 (755)
.|+++.+.+.. ..|..++..++... ......+|+|+||+.+...+...+ .+.++++|||||||. ..+.+ .
T Consensus 79 ~q~~~~~~~l~--~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~-l~d~~rg~~ 155 (674)
T PRK01172 79 MEKYEELSRLR--SLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHI-IGDEDRGPT 155 (674)
T ss_pred HHHHHHHHHHh--hcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchh-ccCCCccHH
Confidence 99999887632 23334443332211 112457999999999888876665 588999999999993 33222 3
Q ss_pred HHHHHHHHHhcCCCcEEEEeccCC-CHHHHHhhhCCCCEEEecCccccceEEEecCCc-----cchHHHHHHHHHHHHhh
Q 048746 262 LFGLLKDLIKFRSDLKLLISSATL-DAEKFSDYFGSAPIFKIPGRRYPVEIHYTKAPE-----ADYIDAAIVTVLQIHVT 335 (755)
Q Consensus 262 ~~~~l~~~~~~~~~~~~il~SAT~-~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 335 (755)
+..++..+...+++.|+|+||||+ +.+.+++|++. +.+....++.|+++....... .......+..++.-. .
T Consensus 156 le~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~~-~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~-~ 233 (674)
T PRK01172 156 LETVLSSARYVNPDARILALSATVSNANELAQWLNA-SLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKET-V 233 (674)
T ss_pred HHHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhCC-CccCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHH-H
Confidence 444555555567789999999999 88899999864 445555666666543221110 000000011111111 1
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCC----------------CCceEEEeccCCCCHHHHHHHhCCCCCCCcE
Q 048746 336 QSPGDILVFLTGQEEIETADEILKHRTRGLGSK----------------IAELIICPIYANLPTELQAKIFEPTPEGARK 399 (755)
Q Consensus 336 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~----------------~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~ 399 (755)
..++++||||+++++++.++..|.+.......- .-...+..+||+|++++|..+++.|++|.++
T Consensus 234 ~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~ 313 (674)
T PRK01172 234 NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIK 313 (674)
T ss_pred hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCe
Confidence 346899999999999999999997754221100 0012477899999999999999999999999
Q ss_pred EEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC---CCEEEEeccCcc-cc-
Q 048746 400 VVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG---PGKCFRLYTLHN-YH- 474 (755)
Q Consensus 400 vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g---~G~~~~l~~~~~-~~- 474 (755)
|||||+++++|+|+|+..+||+ | ...|+.. ...|.|..+|.||+|||||.| .|.++.+..... +.
T Consensus 314 VLvaT~~la~Gvnipa~~VII~-~---~~~~~~~------~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~ 383 (674)
T PRK01172 314 VIVATPTLAAGVNLPARLVIVR-D---ITRYGNG------GIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDA 383 (674)
T ss_pred EEEecchhhccCCCcceEEEEc-C---ceEeCCC------CceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHH
Confidence 9999999999999999877773 2 2344432 123899999999999999998 577777654322 21
Q ss_pred --ccCCCCCccchhccCch------HHHHHHHHcCC----CCCCcC---CCC--CCCc---HHHHHHHHHHHHHccCccC
Q 048746 475 --KDMDDNTVPEIQRTNLA------NVVLILKSLGI----DDLVNF---DFI--DPPP---EEALLKALELLFALSALNK 534 (755)
Q Consensus 475 --~~l~~~~~pei~r~~l~------~~~L~l~~~~~----~~~~~~---~~~--~~p~---~~~i~~a~~~L~~~g~l~~ 534 (755)
+.+.. .|+...+.|. ..+|...+.|. .++.+| .|+ ..++ .+.++.+++.|.+.|+|+.
T Consensus 384 ~~~~l~~--~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~ 461 (674)
T PRK01172 384 AKKYLSG--EPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKG 461 (674)
T ss_pred HHHHHcC--CCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCccc
Confidence 12212 2222222222 11334444443 333333 343 3322 5678999999999999986
Q ss_pred CC--CCCHHHHHhhcCCCChhhHHHHHhccccc-chHHHHhhhccccc
Q 048746 535 LG--ELTKVGRRMAEFPLDPMLSKMIVASDKDK-CSDEIITIAAMLSV 579 (755)
Q Consensus 535 ~~--~lT~lG~~~~~~pl~p~~~~~l~~~~~~~-c~~~~~~i~a~ls~ 579 (755)
++ .+|++|+++|++|++|..++.+..+.... ....++.+.+...+
T Consensus 462 ~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~~~~e 509 (674)
T PRK01172 462 DVTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYISLCRE 509 (674)
T ss_pred CCcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhhcCcc
Confidence 54 58999999999999999999998877653 34455666554443
No 21
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.8e-46 Score=423.95 Aligned_cols=343 Identities=17% Similarity=0.186 Sum_probs=265.4
Q ss_pred ccCCCCcccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhc---
Q 048746 97 VIDGENLDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAG--- 171 (755)
Q Consensus 97 ~~~g~~~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~--- 171 (755)
.+.|...|.|+.+|.++++++.+++.|.+.++..| +++|.++++.+.+|++++++|||||||| +++|.+.....
T Consensus 110 ~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~p-tpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~ 188 (518)
T PLN00206 110 HVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFP-TPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRS 188 (518)
T ss_pred EecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcc
Confidence 45788999999999999999999999999999999 9999999999999999999999999999 67776543211
Q ss_pred ----ccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccc------cCCCCceEEEeCcHHHHHHHhCC-CC
Q 048746 172 ----YTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED------CTSEKTILKYMTDGMLLREILSE-PN 240 (755)
Q Consensus 172 ----~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~------~~~~~~~I~v~T~g~Ll~~l~~~-~~ 240 (755)
...+++++|++|||+||.|+.+.+.. ++...+..+.....++. ....+.+|+|+|||+|++.+... ..
T Consensus 189 ~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~-l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~ 267 (518)
T PLN00206 189 GHPSEQRNPLAMVLTPTRELCVQVEDQAKV-LGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIE 267 (518)
T ss_pred ccccccCCceEEEEeCCHHHHHHHHHHHHH-HhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCcc
Confidence 11345899999999999999877665 43333322221111111 12346799999999999988654 47
Q ss_pred CCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCC--HHHHHhhhCCCCEEEecCcc----ccceEEEe
Q 048746 241 LESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLD--AEKFSDYFGSAPIFKIPGRR----YPVEIHYT 314 (755)
Q Consensus 241 l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~--~~~l~~~~~~~~~~~~~~~~----~~v~~~~~ 314 (755)
+.++++||||||| ++++.+|...+...+.. .++.|++++|||++ .+.++..+...++....+.. ..+...+.
T Consensus 268 l~~v~~lViDEad-~ml~~gf~~~i~~i~~~-l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~ 345 (518)
T PLN00206 268 LDNVSVLVLDEVD-CMLERGFRDQVMQIFQA-LSQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAI 345 (518)
T ss_pred chheeEEEeecHH-HHhhcchHHHHHHHHHh-CCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEE
Confidence 8999999999999 78887776665554443 46789999999994 45777777766654433321 12333333
Q ss_pred cCCccchHHHHHHHHHHHHhh--CCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCC
Q 048746 315 KAPEADYIDAAIVTVLQIHVT--QSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEP 392 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~--~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~ 392 (755)
.....+... .+..+... ...+++||||+++..++.+++.|... .++.+..+||++++++|..+++.
T Consensus 346 ~~~~~~k~~----~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~--------~g~~~~~~Hg~~~~~eR~~il~~ 413 (518)
T PLN00206 346 WVETKQKKQ----KLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV--------TGLKALSIHGEKSMKERREVMKS 413 (518)
T ss_pred eccchhHHH----HHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc--------cCcceEEeeCCCCHHHHHHHHHH
Confidence 333332222 22222221 22468999999999999999988753 23778899999999999999999
Q ss_pred CCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCc
Q 048746 393 TPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLH 471 (755)
Q Consensus 393 f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~ 471 (755)
|++|+.+|||||+++++|||+|+|++||++|+ |.+..+|+||+|||||.| .|.++.|++++
T Consensus 414 Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~------------------P~s~~~yihRiGRaGR~g~~G~ai~f~~~~ 475 (518)
T PLN00206 414 FLVGEVPVIVATGVLGRGVDLLRVRQVIIFDM------------------PNTIKEYIHQIGRASRMGEKGTAIVFVNEE 475 (518)
T ss_pred HHCCCCCEEEEecHhhccCCcccCCEEEEeCC------------------CCCHHHHHHhccccccCCCCeEEEEEEchh
Confidence 99999999999999999999999999999999 999999999999999999 59999999876
Q ss_pred cc
Q 048746 472 NY 473 (755)
Q Consensus 472 ~~ 473 (755)
+.
T Consensus 476 ~~ 477 (518)
T PLN00206 476 DR 477 (518)
T ss_pred HH
Confidence 53
No 22
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-47 Score=395.49 Aligned_cols=334 Identities=19% Similarity=0.277 Sum_probs=265.1
Q ss_pred cccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCC----Ccccc
Q 048746 107 HSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQ----GKVGC 180 (755)
Q Consensus 107 ~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~----~~ilv 180 (755)
..+|.++.++.++++++...|+..| +|+|..+||..+-|++++.+|.|||||| |.+|.+ ....+.+. .+|||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~P-TpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiL-ERLlYrPk~~~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKP-TPIQVATIPVALLGKDICACAATGSGKTAAFALPIL-ERLLYRPKKVAATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCC-CchhhhcccHHhhcchhhheecccCCchhhhHHHHH-HHHhcCcccCcceeEEE
Confidence 4589999999999999999999999 9999999999999999999999999999 556644 22223322 39999
Q ss_pred CccHHHHHHHHHH---HHHHHhCCccccEEee-eeecc-ccCCCCceEEEeCcHHHHHHHhCCC--CCCCCCceEeeccc
Q 048746 181 TQPRRVAAMSVAA---RVSQEMGVKLGHEVGY-SIRFE-DCTSEKTILKYMTDGMLLREILSEP--NLESYSVLMVDEAH 253 (755)
Q Consensus 181 ~~P~r~la~q~a~---~~~~~~~~~~g~~vg~-~~~~~-~~~~~~~~I~v~T~g~Ll~~l~~~~--~l~~~~~vIiDEaH 253 (755)
++|||+||.|++. .++......+|..+|. .++.. ......++|+|+|||+|.+++.+.+ .+.++.++|+||||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 9999999998865 4444445566666662 11111 1223578999999999999999887 68999999999999
Q ss_pred ccCCccchHHHHHHHHHhcCCCcEEEEeccCC--CHHHHHhhhCCCCEEEecCc----cccceEEEecC-Cccch-HHHH
Q 048746 254 ERTLSTDILFGLLKDLIKFRSDLKLLISSATL--DAEKFSDYFGSAPIFKIPGR----RYPVEIHYTKA-PEADY-IDAA 325 (755)
Q Consensus 254 er~~~~d~~~~~l~~~~~~~~~~~~il~SAT~--~~~~l~~~~~~~~~~~~~~~----~~~v~~~~~~~-~~~~~-~~~~ 325 (755)
|++...|...+..++..++.+.|.++||||| .++.++..-.+.|+-..... ...+.+.|... +..+. .+..
T Consensus 338 -RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 338 -RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred -HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHH
Confidence 9999999999888888888899999999999 56788887777776443322 12233333321 12111 1222
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCC
Q 048746 326 IVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATN 405 (755)
Q Consensus 326 ~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~ 405 (755)
+..++. ..-...++||+.+++.+..+.-+|--.+ +.+.-+||+|++++|...++.|+++.+.||||||
T Consensus 417 l~~l~~---rtf~~~~ivFv~tKk~AHRl~IllGLlg---------l~agElHGsLtQ~QRlesL~kFk~~eidvLiaTD 484 (691)
T KOG0338|consen 417 LASLIT---RTFQDRTIVFVRTKKQAHRLRILLGLLG---------LKAGELHGSLTQEQRLESLEKFKKEEIDVLIATD 484 (691)
T ss_pred HHHHHH---HhcccceEEEEehHHHHHHHHHHHHHhh---------chhhhhcccccHHHHHHHHHHHHhccCCEEEEec
Confidence 222221 1125679999999999999887776543 7788899999999999999999999999999999
Q ss_pred cccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 406 IAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 406 i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
+|+||+||++|..||||.+ |.+...|+||+||+.|.| .|..+.|..+++-
T Consensus 485 vAsRGLDI~gV~tVINy~m------------------P~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dR 535 (691)
T KOG0338|consen 485 VASRGLDIEGVQTVINYAM------------------PKTIEHYLHRVGRTARAGRAGRSVTLVGESDR 535 (691)
T ss_pred hhhccCCccceeEEEeccC------------------chhHHHHHHHhhhhhhcccCcceEEEeccccH
Confidence 9999999999999999999 999999999999999999 5999999998754
No 23
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=6.8e-46 Score=417.61 Aligned_cols=332 Identities=19% Similarity=0.230 Sum_probs=262.0
Q ss_pred ccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhc--cHHHHHHHhcccCCCccccCccHH
Q 048746 108 SELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTT--QIPQYLHEAGYTKQGKVGCTQPRR 185 (755)
Q Consensus 108 ~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~--~ip~~l~~~~~~~~~~ilv~~P~r 185 (755)
.+|.++++++.+++.+.+.++..| +++|.++++.+.++++++++||||||||+ .+|.+-.........+++|++|||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~-t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEM-TPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 578999999999999999999998 99999999999999999999999999994 344332221111234789999999
Q ss_pred HHHHHHHHHHHHHh----CCccccEEeeeeecc---ccCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCC
Q 048746 186 VAAMSVAARVSQEM----GVKLGHEVGYSIRFE---DCTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTL 257 (755)
Q Consensus 186 ~la~q~a~~~~~~~----~~~~g~~vg~~~~~~---~~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~ 257 (755)
+||.|+++.+.... +..+....|. .... .....+++|+|+|||+|.+++.... .+.++++||||||| +++
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg-~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l 160 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGG-VPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RML 160 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECC-CChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHh
Confidence 99999998887643 2222222221 1110 1122568999999999999987544 68999999999999 788
Q ss_pred ccchHHHHHHHHHhcCCCcEEEEeccCCC--HHHHHhhhCCCCEE-EecCc--cccceEEEecCCccchHHHHHHHHHHH
Q 048746 258 STDILFGLLKDLIKFRSDLKLLISSATLD--AEKFSDYFGSAPIF-KIPGR--RYPVEIHYTKAPEADYIDAAIVTVLQI 332 (755)
Q Consensus 258 ~~d~~~~~l~~~~~~~~~~~~il~SAT~~--~~~l~~~~~~~~~~-~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~ 332 (755)
+.++...+...+...++..|++++|||++ ...+...+...|.. .+... ...++.+|...+..+... .+..+
T Consensus 161 ~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~----~l~~l 236 (460)
T PRK11776 161 DMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLP----ALQRL 236 (460)
T ss_pred CcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHH----HHHHH
Confidence 88888777777777788899999999994 34666666555543 33222 223566666555444332 34444
Q ss_pred HhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCc
Q 048746 333 HVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLT 412 (755)
Q Consensus 333 ~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gid 412 (755)
.....++++||||++++.++.+++.|.+.+ +.+..+||+|++.+|..+++.|++|..+|||||+++++|||
T Consensus 237 l~~~~~~~~lVF~~t~~~~~~l~~~L~~~~---------~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiD 307 (460)
T PRK11776 237 LLHHQPESCVVFCNTKKECQEVADALNAQG---------FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLD 307 (460)
T ss_pred HHhcCCCceEEEECCHHHHHHHHHHHHhCC---------CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccc
Confidence 444556789999999999999999998743 77899999999999999999999999999999999999999
Q ss_pred CCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 413 IDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 413 ip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
+|++++||++|+ |.+..+|+||+|||||.| .|.||.|+++.+.
T Consensus 308 i~~v~~VI~~d~------------------p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 308 IKALEAVINYEL------------------ARDPEVHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred hhcCCeEEEecC------------------CCCHhHhhhhcccccCCCCcceEEEEEchhHH
Confidence 999999999999 999999999999999999 5999999997643
No 24
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-47 Score=395.70 Aligned_cols=338 Identities=17% Similarity=0.223 Sum_probs=288.3
Q ss_pred cccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHH--HHHhcccC--CCcc
Q 048746 105 ELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQY--LHEAGYTK--QGKV 178 (755)
Q Consensus 105 ~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~--l~~~~~~~--~~~i 178 (755)
..+..|.+++++...++.|.+.++..| +.+|.++|+..+.|++|+..|.|||||| +++|.+ ++...|.. +--+
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~-teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGa 144 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKM-TEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGA 144 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccH-HHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCcee
Confidence 345689999999999999999999998 9999999999999999999999999999 778855 45555553 3378
Q ss_pred ccCccHHHHHHHHHHHHHHH---hCCccccEEee-eeeccccCCCCceEEEeCcHHHHHHHhCCCC--CCCCCceEeecc
Q 048746 179 GCTQPRRVAAMSVAARVSQE---MGVKLGHEVGY-SIRFEDCTSEKTILKYMTDGMLLREILSEPN--LESYSVLMVDEA 252 (755)
Q Consensus 179 lv~~P~r~la~q~a~~~~~~---~~~~~g~~vg~-~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~--l~~~~~vIiDEa 252 (755)
+|+.|||+||.|++..+.+. .+...|..+|. .+.++...-...+|+|||||+|+++|...+. -.++.++|+|||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEA 224 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEA 224 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccH
Confidence 99999999999998877652 34556666663 2334444456789999999999999988885 467889999999
Q ss_pred cccCCccchHHHHHHHHHhcCCCcEEEEeccCC--CHHHHHhhhCCCCEEEecC------ccccceEEEecCCccchHHH
Q 048746 253 HERTLSTDILFGLLKDLIKFRSDLKLLISSATL--DAEKFSDYFGSAPIFKIPG------RRYPVEIHYTKAPEADYIDA 324 (755)
Q Consensus 253 Her~~~~d~~~~~l~~~~~~~~~~~~il~SAT~--~~~~l~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~ 324 (755)
| |+++++|-..+-.++...++..|.++||||. .+.++++.-...|.+.... .+..+.++|...+..+.++
T Consensus 225 D-R~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~- 302 (758)
T KOG0343|consen 225 D-RMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKID- 302 (758)
T ss_pred H-HHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHH-
Confidence 9 9999999999989998999999999999999 7788999866666554332 2445788888888776666
Q ss_pred HHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeC
Q 048746 325 AIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLAT 404 (755)
Q Consensus 325 ~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT 404 (755)
.+..........++|||+.|.+++..+++.+++.. +++.+..+||.|++..|..++..|-..+.-||+||
T Consensus 303 ---~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlr-------pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~T 372 (758)
T KOG0343|consen 303 ---MLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLR-------PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCT 372 (758)
T ss_pred ---HHHHHHHhccccceEEEEehhhHHHHHHHHHHhcC-------CCCceeeeccchhHHHHHHHHHHHHHhcceEEEee
Confidence 55555566678899999999999999999998865 56899999999999999999999998889999999
Q ss_pred CcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEeccCccc
Q 048746 405 NIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTLHNY 473 (755)
Q Consensus 405 ~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~~~~ 473 (755)
|+++||+|+|.|++||++|+ |.+..+|+||+||++|.+. |.|+.+.++.+.
T Consensus 373 Dv~aRGLDFpaVdwViQ~DC------------------Pedv~tYIHRvGRtAR~~~~G~sll~L~psEe 424 (758)
T KOG0343|consen 373 DVAARGLDFPAVDWVIQVDC------------------PEDVDTYIHRVGRTARYKERGESLLMLTPSEE 424 (758)
T ss_pred hhhhccCCCcccceEEEecC------------------chhHHHHHHHhhhhhcccCCCceEEEEcchhH
Confidence 99999999999999999999 9999999999999999995 999999998763
No 25
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-45 Score=356.43 Aligned_cols=337 Identities=16% Similarity=0.244 Sum_probs=272.2
Q ss_pred ccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHH-HHHHHhccc-CCCccccC
Q 048746 104 DELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIP-QYLHEAGYT-KQGKVGCT 181 (755)
Q Consensus 104 ~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip-~~l~~~~~~-~~~~ilv~ 181 (755)
-.++.+|+++++.+++++.+...+++.| ..+|+.+++.|.+|++||+.|..|+|||..+. -.+...... +..+++|+
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekP-S~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lil 101 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKP-SAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALIL 101 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCc-hHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEe
Confidence 3456789999999999999999999999 99999999999999999999999999992222 222111122 23589999
Q ss_pred ccHHHHHHHHHHHHHHHhCCccc----cEEeeeeeccc--cCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccc
Q 048746 182 QPRRVAAMSVAARVSQEMGVKLG----HEVGYSIRFED--CTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHE 254 (755)
Q Consensus 182 ~P~r~la~q~a~~~~~~~~~~~g----~~vg~~~~~~~--~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHe 254 (755)
.|||+||.|+.+.+.. +|...+ ..+|...-.++ +...+.+++.+|||++++++.... .-+.+.++|+||||
T Consensus 102 sPTRELa~Qi~~vi~a-lg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaD- 179 (400)
T KOG0328|consen 102 SPTRELAVQIQKVILA-LGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEAD- 179 (400)
T ss_pred cChHHHHHHHHHHHHH-hcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHH-
Confidence 9999999999987766 444333 33332221221 233578999999999999986554 56789999999999
Q ss_pred cCCccchHHHHHHHHHhcCCCcEEEEeccCCCHH--HHHhhhCCCCEEEecCcc-c---cceEEEecCCccchHHHHHHH
Q 048746 255 RTLSTDILFGLLKDLIKFRSDLKLLISSATLDAE--KFSDYFGSAPIFKIPGRR-Y---PVEIHYTKAPEADYIDAAIVT 328 (755)
Q Consensus 255 r~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~~--~l~~~~~~~~~~~~~~~~-~---~v~~~~~~~~~~~~~~~~~~~ 328 (755)
-+++-+|-..+.......+|+.|++++|||++.+ ...+.|...|+.....|. . .++++|......++ ...+
T Consensus 180 emL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Eew---Kfdt 256 (400)
T KOG0328|consen 180 EMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEW---KFDT 256 (400)
T ss_pred HHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhh---hHhH
Confidence 4777788888888888889999999999999655 455677778876655542 2 36677776655442 3335
Q ss_pred HHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCccc
Q 048746 329 VLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAE 408 (755)
Q Consensus 329 ~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~ 408 (755)
+..+.....-.+.+|||||+..++.+.+.+++ .++.+.++||+|++++|.++++.|++|+.+||++||+-+
T Consensus 257 LcdLYd~LtItQavIFcnTk~kVdwLtekm~~---------~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwa 327 (400)
T KOG0328|consen 257 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRE---------ANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWA 327 (400)
T ss_pred HHHHhhhhehheEEEEecccchhhHHHHHHHh---------hCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhh
Confidence 55555555556899999999999999999988 458999999999999999999999999999999999999
Q ss_pred ccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 409 TSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 409 ~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
||+|+|.|.+|||||+ |...+.|+||+||.||.| .|.++.|...++.
T Consensus 328 RGiDv~qVslviNYDL------------------P~nre~YIHRIGRSGRFGRkGvainFVk~~d~ 375 (400)
T KOG0328|consen 328 RGIDVQQVSLVINYDL------------------PNNRELYIHRIGRSGRFGRKGVAINFVKSDDL 375 (400)
T ss_pred ccCCcceeEEEEecCC------------------CccHHHHhhhhccccccCCcceEEEEecHHHH
Confidence 9999999999999999 999999999999999999 4999999987665
No 26
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.8e-45 Score=408.15 Aligned_cols=331 Identities=16% Similarity=0.180 Sum_probs=249.9
Q ss_pred ccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHH--Hhcc-----cCCCcc
Q 048746 108 SELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLH--EAGY-----TKQGKV 178 (755)
Q Consensus 108 ~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~--~~~~-----~~~~~i 178 (755)
.+|+++++++.+++.+.+.++..| +++|.++++.+.++++++++|||||||| +++|.+.. .... ..++++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~p-t~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNC-TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 578999999999999999999999 9999999999999999999999999999 45554421 1111 123589
Q ss_pred ccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccc------cCCCCceEEEeCcHHHHHHHhCC-CCCCCCCceEeec
Q 048746 179 GCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED------CTSEKTILKYMTDGMLLREILSE-PNLESYSVLMVDE 251 (755)
Q Consensus 179 lv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~------~~~~~~~I~v~T~g~Ll~~l~~~-~~l~~~~~vIiDE 251 (755)
+|++|||+||.|+++.+... ....+..++...+... ....+.+|+|+||++|++++... ..+.++++|||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l-~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPL-AQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEECCcHHHHHHHHHHHHHH-hccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 99999999999998776553 2233333332222211 12245799999999999998654 3789999999999
Q ss_pred ccccCCccchHHHHHHHHHhcC--CCcEEEEeccCCCHH--HHHhhhCCCCE-EEecCcc---ccceEEEecCCccchHH
Q 048746 252 AHERTLSTDILFGLLKDLIKFR--SDLKLLISSATLDAE--KFSDYFGSAPI-FKIPGRR---YPVEIHYTKAPEADYID 323 (755)
Q Consensus 252 aHer~~~~d~~~~~l~~~~~~~--~~~~~il~SAT~~~~--~l~~~~~~~~~-~~~~~~~---~~v~~~~~~~~~~~~~~ 323 (755)
|| ++++.++...+...+.... ...+.+++|||++.. .+..-+...|. +.+.... ..+...+......+
T Consensus 166 ad-~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~--- 241 (423)
T PRK04837 166 AD-RMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEE--- 241 (423)
T ss_pred HH-HHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHH---
Confidence 99 7777777766655444443 245679999999543 33332333343 3332211 12333332222222
Q ss_pred HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEe
Q 048746 324 AAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLA 403 (755)
Q Consensus 324 ~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlva 403 (755)
....+..+......+++||||+++..++.+++.|... ++.+..+||+|++++|..+++.|++|+.+||||
T Consensus 242 -k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVa 311 (423)
T PRK04837 242 -KMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD---------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVA 311 (423)
T ss_pred -HHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC---------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEE
Confidence 2223344444445689999999999999999999874 378899999999999999999999999999999
Q ss_pred CCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCcc
Q 048746 404 TNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHN 472 (755)
Q Consensus 404 T~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~ 472 (755)
|+++++|||+|+|++||++|+ |.+..+|+||+|||||.| .|.++.|+++++
T Consensus 312 Tdv~~rGiDip~v~~VI~~d~------------------P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~ 363 (423)
T PRK04837 312 TDVAARGLHIPAVTHVFNYDL------------------PDDCEDYVHRIGRTGRAGASGHSISLACEEY 363 (423)
T ss_pred echhhcCCCccccCEEEEeCC------------------CCchhheEeccccccCCCCCeeEEEEeCHHH
Confidence 999999999999999999999 999999999999999999 599999998764
No 27
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=5.3e-44 Score=421.15 Aligned_cols=464 Identities=18% Similarity=0.133 Sum_probs=311.9
Q ss_pred cCCCCccchHHHHHHHHHhcCCCChHHHHHHHHH-HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHH
Q 048746 109 ELPDKSKEKSALEMLQEERKTLPIYPYRDELLQA-VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVA 187 (755)
Q Consensus 109 ~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~-i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~l 187 (755)
+|.++++++.+.+.+.+.+...| +++|.++++. +.++++++++||||||||......++......++++++++|+++|
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l-~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aL 80 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEEL-YPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKAL 80 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCC-CHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHH
Confidence 46677888999999999888777 9999999986 889999999999999999555444444333346799999999999
Q ss_pred HHHHHHHHHHH--hCCccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCC-CCCCCCCceEeecccccCCccchHHH
Q 048746 188 AMSVAARVSQE--MGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSE-PNLESYSVLMVDEAHERTLSTDILFG 264 (755)
Q Consensus 188 a~q~a~~~~~~--~~~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~-~~l~~~~~vIiDEaHer~~~~d~~~~ 264 (755)
|.|+++++... +|..++...|... ........++|+|+||+.+...+... .+++++++|||||+| ...+.+....
T Consensus 81 a~q~~~~~~~~~~~g~~v~~~~Gd~~-~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H-~l~~~~rg~~ 158 (720)
T PRK00254 81 AEEKYREFKDWEKLGLRVAMTTGDYD-STDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIH-LIGSYDRGAT 158 (720)
T ss_pred HHHHHHHHHHHhhcCCEEEEEeCCCC-CchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcC-ccCCccchHH
Confidence 99999988752 2334333333111 11112245789999999998877644 478999999999999 4443333333
Q ss_pred HHHHHHhcCCCcEEEEeccCC-CHHHHHhhhCCCCEEEecCccccceEEEe-------cCCcc-chHHHHHHHHHHHHhh
Q 048746 265 LLKDLIKFRSDLKLLISSATL-DAEKFSDYFGSAPIFKIPGRRYPVEIHYT-------KAPEA-DYIDAAIVTVLQIHVT 335 (755)
Q Consensus 265 ~l~~~~~~~~~~~~il~SAT~-~~~~l~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~-~~~~~~~~~~~~~~~~ 335 (755)
+...+.+...+.|+|++|||+ +++.+++|++.. .+....++.|+..... ..... .+.......+.+...
T Consensus 159 le~il~~l~~~~qiI~lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~- 236 (720)
T PRK00254 159 LEMILTHMLGRAQILGLSATVGNAEELAEWLNAE-LVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK- 236 (720)
T ss_pred HHHHHHhcCcCCcEEEEEccCCCHHHHHHHhCCc-cccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH-
Confidence 333344456678999999999 889999998753 3333344444422111 11110 111222222222222
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhhcccC------------------CC------CCceEEEeccCCCCHHHHHHHhC
Q 048746 336 QSPGDILVFLTGQEEIETADEILKHRTRGLG------------------SK------IAELIICPIYANLPTELQAKIFE 391 (755)
Q Consensus 336 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~------------------~~------~~~~~v~~lh~~l~~~~r~~i~~ 391 (755)
.++++||||++++.++.++..|........ .. .-...+..+||+|++++|..+++
T Consensus 237 -~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~ 315 (720)
T PRK00254 237 -KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIED 315 (720)
T ss_pred -hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHH
Confidence 367999999999999998877754321000 00 00124889999999999999999
Q ss_pred CCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC---CCEEEEec
Q 048746 392 PTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG---PGKCFRLY 468 (755)
Q Consensus 392 ~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g---~G~~~~l~ 468 (755)
.|++|.++|||||+++++|||+|++++||. ....|+ ..|+ .+.+..+|.||+|||||.| .|.++.+.
T Consensus 316 ~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~----~~~~~~-~~~~-----~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~ 385 (720)
T PRK00254 316 AFREGLIKVITATPTLSAGINLPAFRVIIR----DTKRYS-NFGW-----EDIPVLEIQQMMGRAGRPKYDEVGEAIIVA 385 (720)
T ss_pred HHHCCCCeEEEeCcHHhhhcCCCceEEEEC----CceEcC-CCCc-----eeCCHHHHHHhhhccCCCCcCCCceEEEEe
Confidence 999999999999999999999999999993 334554 2222 2567889999999999986 59999998
Q ss_pred cCccc---cccCCCCCccchhccC------chHHHHHHHHcC-CCCCC--------cCCCCCCCc----HHHHHHHHHHH
Q 048746 469 TLHNY---HKDMDDNTVPEIQRTN------LANVVLILKSLG-IDDLV--------NFDFIDPPP----EEALLKALELL 526 (755)
Q Consensus 469 ~~~~~---~~~l~~~~~pei~r~~------l~~~~L~l~~~~-~~~~~--------~~~~~~~p~----~~~i~~a~~~L 526 (755)
+..+. ...+. ...||-+... |...++...+.+ +.+.. .|-+...|+ .+.+..+++.|
T Consensus 386 ~~~~~~~~~~~~~-~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L 464 (720)
T PRK00254 386 TTEEPSKLMERYI-FGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFL 464 (720)
T ss_pred cCcchHHHHHHHH-hCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHH
Confidence 75431 11111 1122222111 223344444433 22211 111212233 35678889999
Q ss_pred HHccCccCC--C--CCCHHHHHhhcCCCChhhHHHHHhccc----ccchHHHHhhhcccccccccccCCcc
Q 048746 527 FALSALNKL--G--ELTKVGRRMAEFPLDPMLSKMIVASDK----DKCSDEIITIAAMLSVGNSIFYRPKD 589 (755)
Q Consensus 527 ~~~g~l~~~--~--~lT~lG~~~~~~pl~p~~~~~l~~~~~----~~c~~~~~~i~a~ls~~~~~f~~~~~ 589 (755)
.+.|+|+.+ + .+|++|+++|.++++|..++.+..+.. ......++.+.+......++..+..+
T Consensus 465 ~~~~~i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~~~r~~e 535 (720)
T PRK00254 465 LENEFIDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTPLNYSRKE 535 (720)
T ss_pred HHCCCeEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCccccccCcchhh
Confidence 999999654 2 479999999999999999999987654 24566788888777665555555433
No 28
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.2e-44 Score=415.04 Aligned_cols=333 Identities=18% Similarity=0.246 Sum_probs=259.2
Q ss_pred cccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhc--cHHHHHHHhcccCCCccccCccH
Q 048746 107 HSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTT--QIPQYLHEAGYTKQGKVGCTQPR 184 (755)
Q Consensus 107 ~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~--~ip~~l~~~~~~~~~~ilv~~P~ 184 (755)
..+|.++++++.++++|.+.++..| +++|.++++.+.+++++|++||||||||. .+|.+-........+++||++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~p-tpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PT 83 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKP-SPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPT 83 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCc
Confidence 4468899999999999999999999 99999999999999999999999999994 44443221111234589999999
Q ss_pred HHHHHHHHHHHHHHhCCccccEEeeeeeccc------cCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCC
Q 048746 185 RVAAMSVAARVSQEMGVKLGHEVGYSIRFED------CTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTL 257 (755)
Q Consensus 185 r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~------~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~ 257 (755)
|+||.|+++.+....+...+..+........ .....++|+|+||++|++++.... .+.++++||||||| .++
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd-~ml 162 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD-EML 162 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH-HHh
Confidence 9999999988877543322222221111111 123467999999999999987654 68999999999999 678
Q ss_pred ccchHHHHHHHHHhcCCCcEEEEeccCCCH--HHHHhhhCCCC-EEEecCcc---ccceEEEecCCccchHHHHHHHHHH
Q 048746 258 STDILFGLLKDLIKFRSDLKLLISSATLDA--EKFSDYFGSAP-IFKIPGRR---YPVEIHYTKAPEADYIDAAIVTVLQ 331 (755)
Q Consensus 258 ~~d~~~~~l~~~~~~~~~~~~il~SAT~~~--~~l~~~~~~~~-~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~ 331 (755)
...+...+...+...+...|+++||||++. ..+.+.|...+ .+.+.... ..+...|......+..+ .+..
T Consensus 163 ~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~----~L~~ 238 (629)
T PRK11634 163 RMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNE----ALVR 238 (629)
T ss_pred hcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHH----HHHH
Confidence 888888877777778888999999999943 34544444333 34443321 23444444433333333 3334
Q ss_pred HHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccC
Q 048746 332 IHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSL 411 (755)
Q Consensus 332 ~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gi 411 (755)
+.......++||||+++..++.++..|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++||
T Consensus 239 ~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~---------g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGI 309 (629)
T PRK11634 239 FLEAEDFDAAIIFVRTKNATLEVAEALERN---------GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 309 (629)
T ss_pred HHHhcCCCCEEEEeccHHHHHHHHHHHHhC---------CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCC
Confidence 444445678999999999999999999874 37788999999999999999999999999999999999999
Q ss_pred cCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEeccCcc
Q 048746 412 TIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTLHN 472 (755)
Q Consensus 412 dip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~~~ 472 (755)
|+|+|++|||+++ |.+.++|+||+|||||.|. |.++.++++.+
T Consensus 310 Dip~V~~VI~~d~------------------P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e 353 (629)
T PRK11634 310 DVERISLVVNYDI------------------PMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 (629)
T ss_pred CcccCCEEEEeCC------------------CCCHHHHHHHhccccCCCCcceEEEEechHH
Confidence 9999999999999 9999999999999999995 99999998654
No 29
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.6e-46 Score=374.61 Aligned_cols=340 Identities=19% Similarity=0.262 Sum_probs=279.5
Q ss_pred CcccccccCCCC-ccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhc------c
Q 048746 102 NLDELHSELPDK-SKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAG------Y 172 (755)
Q Consensus 102 ~~~~~~~~f~~~-~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~------~ 172 (755)
..|+|..+|++. .-.++++++|.+.++..| +|+|.+++|.+++|.+++.+|.||+||| +++|.+++... .
T Consensus 213 pIPnP~ctFddAFq~~pevmenIkK~GFqKP-tPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~q 291 (629)
T KOG0336|consen 213 PIPNPVCTFDDAFQCYPEVMENIKKTGFQKP-TPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQ 291 (629)
T ss_pred cCCCCcCcHHHHHhhhHHHHHHHHhccCCCC-CcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhc
Confidence 467888888764 457899999999999999 9999999999999999999999999999 78887765332 2
Q ss_pred cCCCccccCccHHHHHHHHHHHHHHHh--CCccccEEeeeeecccc--CCCCceEEEeCcHHHHHHHhCCC-CCCCCCce
Q 048746 173 TKQGKVGCTQPRRVAAMSVAARVSQEM--GVKLGHEVGYSIRFEDC--TSEKTILKYMTDGMLLREILSEP-NLESYSVL 247 (755)
Q Consensus 173 ~~~~~ilv~~P~r~la~q~a~~~~~~~--~~~~g~~vg~~~~~~~~--~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~v 247 (755)
..+..++++.|||+||.|+.-.+.++. |.......|..-|.+.. ...+..|+++|||+|.++...+. +|..+.++
T Consensus 292 r~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 292 RNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred cCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEE
Confidence 234589999999999999988877754 44433444433333322 33578999999999999887664 89999999
Q ss_pred EeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCC--HHHHHhhhCCCCEEEecCcc-----ccceEEEecCCccc
Q 048746 248 MVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLD--AEKFSDYFGSAPIFKIPGRR-----YPVEIHYTKAPEAD 320 (755)
Q Consensus 248 IiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~--~~~l~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~ 320 (755)
|+|||| |+++++|...+.++++..+|+.++++.|||++ +..++.-+...|++...|.. ..|++.+....+.+
T Consensus 372 VlDEAD-rMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~ 450 (629)
T KOG0336|consen 372 VLDEAD-RMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSE 450 (629)
T ss_pred Eecchh-hhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHH
Confidence 999999 99999999999999999999999999999994 55777777778888777763 45666665544444
Q ss_pred hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEE
Q 048746 321 YIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKV 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~v 400 (755)
+.. .+...+. ...+..++||||..+..++.+..-|.- .++..-.+||+-.+.+|+.+++.|++|..+|
T Consensus 451 k~~-~~~~f~~--~ms~ndKvIiFv~~K~~AD~LSSd~~l---------~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrI 518 (629)
T KOG0336|consen 451 KLE-IVQFFVA--NMSSNDKVIIFVSRKVMADHLSSDFCL---------KGISSQSLHGNREQSDREMALEDFKSGEVRI 518 (629)
T ss_pred HHH-HHHHHHH--hcCCCceEEEEEechhhhhhccchhhh---------cccchhhccCChhhhhHHHHHHhhhcCceEE
Confidence 443 2222222 234467999999999988888776654 3477788999999999999999999999999
Q ss_pred EEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEeccCccc
Q 048746 401 VLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTLHNY 473 (755)
Q Consensus 401 lvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~~~~ 473 (755)
||||++++||+|+|+|+||+|||| |.++++|+||+||+||+|. |..+.+++..+.
T Consensus 519 LvaTDlaSRGlDv~DiTHV~NyDF------------------P~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~ 574 (629)
T KOG0336|consen 519 LVATDLASRGLDVPDITHVYNYDF------------------PRNIEEYVHRVGRTGRAGRTGTSISFLTRNDW 574 (629)
T ss_pred EEEechhhcCCCchhcceeeccCC------------------CccHHHHHHHhcccccCCCCcceEEEEehhhH
Confidence 999999999999999999999999 9999999999999999995 999999998876
No 30
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.2e-44 Score=405.78 Aligned_cols=331 Identities=20% Similarity=0.244 Sum_probs=254.8
Q ss_pred cCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhc--cc----CCCcccc
Q 048746 109 ELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAG--YT----KQGKVGC 180 (755)
Q Consensus 109 ~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~--~~----~~~~ilv 180 (755)
+|+++++++.+++.+.+.++..| +++|.++++.+.+++++|++|||||||| +++|.+-.... .. ...++||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p-t~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREP-TPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 68889999999999999999999 9999999999999999999999999999 55664432211 00 1237999
Q ss_pred CccHHHHHHHHHHHHHHHhC---CccccEEeeeeecc---ccCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeeccc
Q 048746 181 TQPRRVAAMSVAARVSQEMG---VKLGHEVGYSIRFE---DCTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAH 253 (755)
Q Consensus 181 ~~P~r~la~q~a~~~~~~~~---~~~g~~vg~~~~~~---~~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaH 253 (755)
++|||+||.|+.+.+..... ......+|. ...+ .......+|+|+||++|++.+.... .++++++|||||||
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg-~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah 159 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGG-VSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD 159 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECC-cCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH
Confidence 99999999999988877432 222222221 1111 1123467999999999999886554 68999999999999
Q ss_pred ccCCccchHHHHHHHHHhcCCCcEEEEeccCCCH--HHHHhhhCCCCE-EEecCc---cccceEEEecCCccchHHHHHH
Q 048746 254 ERTLSTDILFGLLKDLIKFRSDLKLLISSATLDA--EKFSDYFGSAPI-FKIPGR---RYPVEIHYTKAPEADYIDAAIV 327 (755)
Q Consensus 254 er~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~--~~l~~~~~~~~~-~~~~~~---~~~v~~~~~~~~~~~~~~~~~~ 327 (755)
++++.++...+...+....+..|++++|||++. ..+...+...+. +.+..+ ...+..++........ ..
T Consensus 160 -~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k----~~ 234 (456)
T PRK10590 160 -RMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRK----RE 234 (456)
T ss_pred -HHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHH----HH
Confidence 788888877777766667778899999999954 455555544443 333322 1223334333322221 12
Q ss_pred HHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcc
Q 048746 328 TVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIA 407 (755)
Q Consensus 328 ~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~ 407 (755)
.+..+.......++||||+++.+++.+++.|... ++.+..+||+|++++|..+++.|++|+.+|||||+++
T Consensus 235 ~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~ 305 (456)
T PRK10590 235 LLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD---------GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIA 305 (456)
T ss_pred HHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC---------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHH
Confidence 2333333444578999999999999999999874 3778899999999999999999999999999999999
Q ss_pred cccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEeccCccc
Q 048746 408 ETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTLHNY 473 (755)
Q Consensus 408 ~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~~~~ 473 (755)
++|||+|+|++||+|++ |.+..+|+||+|||||.|. |.|+.|++..+.
T Consensus 306 ~rGiDip~v~~VI~~~~------------------P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 306 ARGLDIEELPHVVNYEL------------------PNVPEDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred hcCCCcccCCEEEEeCC------------------CCCHHHhhhhccccccCCCCeeEEEEecHHHH
Confidence 99999999999999999 9999999999999999995 999999987543
No 31
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.4e-44 Score=375.90 Aligned_cols=334 Identities=19% Similarity=0.222 Sum_probs=270.8
Q ss_pred cccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHH--hccc--CCCcccc
Q 048746 107 HSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHE--AGYT--KQGKVGC 180 (755)
Q Consensus 107 ~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~--~~~~--~~~~ilv 180 (755)
...|.+..+++..+++|.++++..- +++|+..|+.+..|+++++.|.|||||| +++|.+-+. ..+. ++..++|
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~M-T~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlI 159 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETM-TPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLI 159 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccch-hHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEE
Confidence 3457888999999999999999875 9999999999999999999999999999 888866332 2222 2237999
Q ss_pred CccHHHHHHHHHHHHHHHhCCccccEEeeeeecccc------CCCCceEEEeCcHHHHHHHhCCC--CCCCCCceEeecc
Q 048746 181 TQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDC------TSEKTILKYMTDGMLLREILSEP--NLESYSVLMVDEA 252 (755)
Q Consensus 181 ~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~------~~~~~~I~v~T~g~Ll~~l~~~~--~l~~~~~vIiDEa 252 (755)
++|||+||+|++....+.+...-+..+|+.+++... ....+.|+|+|||+|++++++.+ ...++.++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 999999999999888776654435556655555432 22478999999999999998876 4667789999999
Q ss_pred cccCCccchHHHHHHHHHhcCCCcEEEEeccCCC--HHHHHhhhCC-CCEEE-ec-Cc----cccceEEEecCCccchHH
Q 048746 253 HERTLSTDILFGLLKDLIKFRSDLKLLISSATLD--AEKFSDYFGS-APIFK-IP-GR----RYPVEIHYTKAPEADYID 323 (755)
Q Consensus 253 Her~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~--~~~l~~~~~~-~~~~~-~~-~~----~~~v~~~~~~~~~~~~~~ 323 (755)
| |.++.+|...+.+++...+...|.+++|||.+ ++.++..... .+++. +. +. .-.+++-|...+....+.
T Consensus 240 D-rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 240 D-RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS 318 (543)
T ss_pred h-hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH
Confidence 9 99999999999999988889999999999994 4566655333 34332 21 11 224667677776655543
Q ss_pred HHHHHHHHHHhhCC-CCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEE
Q 048746 324 AAIVTVLQIHVTQS-PGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVL 402 (755)
Q Consensus 324 ~~~~~~~~~~~~~~-~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlv 402 (755)
... .+..... ..+|+|||+|...+..+++.|+. -++.|..+||++++..|..++..|++.+.-|||
T Consensus 319 ll~----~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~---------~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~ 385 (543)
T KOG0342|consen 319 LLY----TFLKKNIKRYKIIVFFSTCMSVKFHAELLNY---------IDLPVLEIHGKQKQNKRTSTFFEFCKAESGILV 385 (543)
T ss_pred HHH----HHHHHhcCCceEEEEechhhHHHHHHHHHhh---------cCCchhhhhcCCcccccchHHHHHhhcccceEE
Confidence 222 2222222 28999999999999999999986 348899999999999999999999999999999
Q ss_pred eCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEeccCccc
Q 048746 403 ATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTLHNY 473 (755)
Q Consensus 403 aT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~~~~ 473 (755)
|||+++||+|+|+|++||++|. |.+..+|+||+||+||.|. |..+.+..+++.
T Consensus 386 cTDVaARGlD~P~V~~VvQ~~~------------------P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El 439 (543)
T KOG0342|consen 386 CTDVAARGLDIPDVDWVVQYDP------------------PSDPEQYIHRVGRTAREGKEGKALLLLAPWEL 439 (543)
T ss_pred ecchhhccCCCCCceEEEEeCC------------------CCCHHHHHHHhccccccCCCceEEEEeChhHH
Confidence 9999999999999999999999 9999999999999999985 999999988754
No 32
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.6e-44 Score=408.16 Aligned_cols=331 Identities=17% Similarity=0.216 Sum_probs=252.3
Q ss_pred ccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHh--c-----ccCCCcc
Q 048746 108 SELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEA--G-----YTKQGKV 178 (755)
Q Consensus 108 ~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~--~-----~~~~~~i 178 (755)
.+|.++++++.+++.|.+.++..| +++|.++|+.+.+++|++++|||||||| +++|.+-... . .....++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~p-tpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRC-TPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 369999999999999999999999 9999999999999999999999999999 5555442111 0 1113589
Q ss_pred ccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccc------cCCCCceEEEeCcHHHHHHHhCC--CCCCCCCceEee
Q 048746 179 GCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED------CTSEKTILKYMTDGMLLREILSE--PNLESYSVLMVD 250 (755)
Q Consensus 179 lv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~------~~~~~~~I~v~T~g~Ll~~l~~~--~~l~~~~~vIiD 250 (755)
||++|||+||.|+++.+.+ ++...+..++....... ......+|+|+||++|++.+... ..+.++++||||
T Consensus 88 LIl~PTreLa~Qi~~~~~~-l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViD 166 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVK-FGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLD 166 (572)
T ss_pred EEEeCcHHHHHHHHHHHHH-HhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEec
Confidence 9999999999999988766 44444444432222211 12245789999999999988654 357889999999
Q ss_pred cccccCCccchHHHHHHHHHhcCC--CcEEEEeccCCCHH--HHH-hhhCCCCEEEecCcc---ccceEEEecCCccchH
Q 048746 251 EAHERTLSTDILFGLLKDLIKFRS--DLKLLISSATLDAE--KFS-DYFGSAPIFKIPGRR---YPVEIHYTKAPEADYI 322 (755)
Q Consensus 251 EaHer~~~~d~~~~~l~~~~~~~~--~~~~il~SAT~~~~--~l~-~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~ 322 (755)
||| ++++.++...+...+..... +.|+++||||++.. .+. .++.....+.+.... ..+...+......+
T Consensus 167 EAh-~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~-- 243 (572)
T PRK04537 167 EAD-RMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEE-- 243 (572)
T ss_pred CHH-HHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHH--
Confidence 999 67777776665555444433 68999999999543 333 344333233332221 12333333332222
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEE
Q 048746 323 DAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVL 402 (755)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlv 402 (755)
....++.+.......++||||+++..++.+++.|.+. ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 244 --k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~---------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLV 312 (572)
T PRK04537 244 --KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH---------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILV 312 (572)
T ss_pred --HHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 2234444445555789999999999999999999874 37799999999999999999999999999999
Q ss_pred eCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCcc
Q 048746 403 ATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHN 472 (755)
Q Consensus 403 aT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~ 472 (755)
||+++++|||+|+|++||+|++ |.+..+|+||+|||||.| .|.|+.|+++.+
T Consensus 313 aTdv~arGIDip~V~~VInyd~------------------P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 313 ATDVAARGLHIDGVKYVYNYDL------------------PFDAEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred EehhhhcCCCccCCCEEEEcCC------------------CCCHHHHhhhhcccccCCCCceEEEEecHHH
Confidence 9999999999999999999999 999999999999999999 499999998653
No 33
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-44 Score=372.96 Aligned_cols=351 Identities=20% Similarity=0.217 Sum_probs=276.4
Q ss_pred cCCCCc--cchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHH---HhcccCCC--ccc
Q 048746 109 ELPDKS--KEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLH---EAGYTKQG--KVG 179 (755)
Q Consensus 109 ~f~~~~--~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~---~~~~~~~~--~il 179 (755)
+|+++. +++.+++.+.+.++..- +|+|..+||.+.+++||++-|+|||||| +++|.+-. .....+.+ ..+
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~m-TpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKM-TPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCccc-CHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 344443 45999999999999886 9999999999999999999999999999 77775522 12122222 678
Q ss_pred cCccHHHHHHHHHHHHHHH----hCCccccEEeeeeecccc---CCCCceEEEeCcHHHHHHHhCCC---CCCCCCceEe
Q 048746 180 CTQPRRVAAMSVAARVSQE----MGVKLGHEVGYSIRFEDC---TSEKTILKYMTDGMLLREILSEP---NLESYSVLMV 249 (755)
Q Consensus 180 v~~P~r~la~q~a~~~~~~----~~~~~g~~vg~~~~~~~~---~~~~~~I~v~T~g~Ll~~l~~~~---~l~~~~~vIi 249 (755)
|+.|||+||.|+.+.+... .+......+|...-.++. ...++.|+|+|||+|.+.++... .+.+++++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999997654432 233344456642222221 23578899999999999997643 4558999999
Q ss_pred ecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC--CHHHHHhhhCCCCEEEecCc-c---cc--ceEEEecCCccch
Q 048746 250 DEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL--DAEKFSDYFGSAPIFKIPGR-R---YP--VEIHYTKAPEADY 321 (755)
Q Consensus 250 DEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~--~~~~l~~~~~~~~~~~~~~~-~---~~--v~~~~~~~~~~~~ 321 (755)
|||| |.++++|...+..++..++...++=++|||. .++.+.......|+-...+. . .| +..+|..++....
T Consensus 164 DEAD-rLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 164 DEAD-RLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred cchH-hHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 9999 9999999999999999999999999999999 55677777666665433222 1 34 7788888766554
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEE
Q 048746 322 IDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVV 401 (755)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vl 401 (755)
.. .++++......+++|||++|...++.....+.... ....++++||.|.+..|.++++.|.+....++
T Consensus 243 ~~----~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l-------~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl 311 (567)
T KOG0345|consen 243 LS----QLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL-------KKREIFSIHGKMSQKARAKVLEAFRKLSNGVL 311 (567)
T ss_pred HH----HHHHHHhccccccEEEEecCcchHHHHHHHHHHHh-------CCCcEEEecchhcchhHHHHHHHHHhccCceE
Confidence 44 45555555667899999999999999999988764 45789999999999999999999999888999
Q ss_pred EeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEeccC--ccccccCC
Q 048746 402 LATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTL--HNYHKDMD 478 (755)
Q Consensus 402 vaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~--~~~~~~l~ 478 (755)
+|||+|+||||||+|++||++|. |.+..+|+||+|||||.|. |.++.|..+ .+|.+.|.
T Consensus 312 ~~TDVaARGlDip~iD~VvQ~Dp------------------P~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~ 373 (567)
T KOG0345|consen 312 FCTDVAARGLDIPGIDLVVQFDP------------------PKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLR 373 (567)
T ss_pred EeehhhhccCCCCCceEEEecCC------------------CCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHH
Confidence 99999999999999999999999 9999999999999999995 888777764 45555566
Q ss_pred CCCccchhccCc
Q 048746 479 DNTVPEIQRTNL 490 (755)
Q Consensus 479 ~~~~pei~r~~l 490 (755)
....|++.+...
T Consensus 374 i~~~v~le~~~~ 385 (567)
T KOG0345|consen 374 IKGKVELERIDT 385 (567)
T ss_pred hcCccchhhhcc
Confidence 666666655443
No 34
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.2e-43 Score=396.96 Aligned_cols=333 Identities=22% Similarity=0.298 Sum_probs=257.8
Q ss_pred cCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHH--Hhcc--cCCCccccCc
Q 048746 109 ELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLH--EAGY--TKQGKVGCTQ 182 (755)
Q Consensus 109 ~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~--~~~~--~~~~~ilv~~ 182 (755)
+|+++++++.+++.+.+.++..| +++|.++++++.++++++++|||||||| +++|.+-. .... ....+++|++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p-~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRP-TAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 68889999999999999999999 9999999999999999999999999999 45554422 1111 1235899999
Q ss_pred cHHHHHHHHHHHHHHHh---CCccccEEeeeeec--cccCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccC
Q 048746 183 PRRVAAMSVAARVSQEM---GVKLGHEVGYSIRF--EDCTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERT 256 (755)
Q Consensus 183 P~r~la~q~a~~~~~~~---~~~~g~~vg~~~~~--~~~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~ 256 (755)
||++||.|+++.+.... +..++..+|..... ......+.+|+|+|||+|++.+.... .+.++++||||||| ++
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~ 159 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RM 159 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HH
Confidence 99999999988776532 33443333311110 11123467899999999999987665 58899999999999 88
Q ss_pred CccchHHHHHHHHHhcCCCcEEEEeccCCCH---HHHHhhhCCCCEEE-ecCc---cccceEEEecCCccchHHHHHHHH
Q 048746 257 LSTDILFGLLKDLIKFRSDLKLLISSATLDA---EKFSDYFGSAPIFK-IPGR---RYPVEIHYTKAPEADYIDAAIVTV 329 (755)
Q Consensus 257 ~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~---~~l~~~~~~~~~~~-~~~~---~~~v~~~~~~~~~~~~~~~~~~~~ 329 (755)
++..+...+.......+...|+++||||++. ..+..++...++.. +... ...+...+...... ......+
T Consensus 160 l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~---~~k~~~l 236 (434)
T PRK11192 160 LDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDL---EHKTALL 236 (434)
T ss_pred hCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCH---HHHHHHH
Confidence 8888777766666666777899999999953 45666665555432 2111 11233344333222 2223344
Q ss_pred HHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccc
Q 048746 330 LQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAET 409 (755)
Q Consensus 330 ~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~ 409 (755)
..+......+++||||+++++++.++..|... ++.+..+||+|++.+|..+++.|++|..+|||||+++++
T Consensus 237 ~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~ 307 (434)
T PRK11192 237 CHLLKQPEVTRSIVFVRTRERVHELAGWLRKA---------GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAAR 307 (434)
T ss_pred HHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC---------CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcccccc
Confidence 44444445689999999999999999999873 377899999999999999999999999999999999999
Q ss_pred cCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 410 SLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 410 Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
|||+|+|++||++++ |.|...|+||+|||||.| .|.++.+++.++.
T Consensus 308 GiDip~v~~VI~~d~------------------p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~ 354 (434)
T PRK11192 308 GIDIDDVSHVINFDM------------------PRSADTYLHRIGRTGRAGRKGTAISLVEAHDH 354 (434)
T ss_pred CccCCCCCEEEEECC------------------CCCHHHHhhcccccccCCCCceEEEEecHHHH
Confidence 999999999999999 999999999999999998 5999999987655
No 35
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-44 Score=356.55 Aligned_cols=334 Identities=21% Similarity=0.258 Sum_probs=265.5
Q ss_pred cccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhc--cHHHHHHHhcccCCCccccCccH
Q 048746 107 HSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTT--QIPQYLHEAGYTKQGKVGCTQPR 184 (755)
Q Consensus 107 ~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~--~ip~~l~~~~~~~~~~ilv~~P~ 184 (755)
...|+.+++++-+.+.+.+.+-..| +|+|..+||.|+.|+++|.+|.||||||+ .+|.+-....-..+...+|+.||
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~p-TpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPT 84 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKP-TPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPT 84 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCC-CchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecch
Confidence 4579999999999999999999999 99999999999999999999999999994 44444322222233478999999
Q ss_pred HHHHHHHHHHHHHHhCCccccEEeeeeeccc------cCCCCceEEEeCcHHHHHHHhCCC-----CCCCCCceEeeccc
Q 048746 185 RVAAMSVAARVSQEMGVKLGHEVGYSIRFED------CTSEKTILKYMTDGMLLREILSEP-----NLESYSVLMVDEAH 253 (755)
Q Consensus 185 r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~------~~~~~~~I~v~T~g~Ll~~l~~~~-----~l~~~~~vIiDEaH 253 (755)
|+||.|+++++.. +|...+..+..-+++.+ ..+.+.+++++|||+|-.++.++. .+.++.++|+|||+
T Consensus 85 rELA~QiaEQF~a-lGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD 163 (442)
T KOG0340|consen 85 RELALQIAEQFIA-LGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD 163 (442)
T ss_pred HHHHHHHHHHHHH-hcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh
Confidence 9999999999977 56555554444444433 245688999999999999998773 47899999999999
Q ss_pred ccCCccchHHHHHHHHHhcCCCcEEEEeccCCCHHHHHhhhCCCCE-----EEe---cCcc--ccceEEEecCCccchHH
Q 048746 254 ERTLSTDILFGLLKDLIKFRSDLKLLISSATLDAEKFSDYFGSAPI-----FKI---PGRR--YPVEIHYTKAPEADYID 323 (755)
Q Consensus 254 er~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~~~l~~~~~~~~~-----~~~---~~~~--~~v~~~~~~~~~~~~~~ 323 (755)
|.+..+|-..+--+....++..|.+++|||++. .+...++ +|+ +.. ++.. ..+.+.|...+.. -.+
T Consensus 164 -rvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd-~i~ql~~-~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~-vkd 239 (442)
T KOG0340|consen 164 -RVLAGCFPDILEGIEECLPKPRQTLLFSATITD-TIKQLFG-CPITKSIAFELEVIDGVSTVETLYQGYILVSID-VKD 239 (442)
T ss_pred -hhhccchhhHHhhhhccCCCccceEEEEeehhh-HHHHhhc-CCcccccceEEeccCCCCchhhhhhheeecchh-hhH
Confidence 999998877666666667777899999999932 2233332 211 111 2221 1234556555433 334
Q ss_pred HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEe
Q 048746 324 AAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLA 403 (755)
Q Consensus 324 ~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlva 403 (755)
..+..++......+.+.++||+++..+++.++..|+.. ++.+..+||.|++.+|...+..|+++..+||||
T Consensus 240 aYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l---------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~ilia 310 (442)
T KOG0340|consen 240 AYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL---------EVRVVSLHSQMPQKERLAALSRFRSNAARILIA 310 (442)
T ss_pred HHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh---------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEE
Confidence 44445555555556899999999999999999999884 489999999999999999999999999999999
Q ss_pred CCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEeccCccc
Q 048746 404 TNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTLHNY 473 (755)
Q Consensus 404 T~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~~~~ 473 (755)
||+|+||+|||.|..|||+++ |.++.+|+||+||++|.|. |.++.++++.+.
T Consensus 311 TDVAsRGLDIP~V~LVvN~di------------------Pr~P~~yiHRvGRtARAGR~G~aiSivt~rDv 363 (442)
T KOG0340|consen 311 TDVASRGLDIPTVELVVNHDI------------------PRDPKDYIHRVGRTARAGRKGMAISIVTQRDV 363 (442)
T ss_pred echhhcCCCCCceeEEEecCC------------------CCCHHHHHHhhcchhcccCCcceEEEechhhH
Confidence 999999999999999999999 9999999999999999995 999999996554
No 36
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-44 Score=381.80 Aligned_cols=345 Identities=19% Similarity=0.194 Sum_probs=275.6
Q ss_pred ccCCCCcccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHH--Hhcc
Q 048746 97 VIDGENLDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLH--EAGY 172 (755)
Q Consensus 97 ~~~g~~~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~--~~~~ 172 (755)
.++|...|.++..|.+..+.+.+..++...++..| +|+|+..++.+..|++++++|+|||||| +++|.+-+ +...
T Consensus 63 ~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~p-tpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~ 141 (482)
T KOG0335|consen 63 KVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKP-TPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGP 141 (482)
T ss_pred eccCCccCCCcccccccchhHHHhhccccccccCC-CcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCc
Confidence 45788899999999999999999999999999999 9999999999999999999999999999 88886643 2211
Q ss_pred c--------CCCccccCccHHHHHHHHHHHHHHHhCCcc-ccEEeeeee---cc-ccCCCCceEEEeCcHHHHHHHhCCC
Q 048746 173 T--------KQGKVGCTQPRRVAAMSVAARVSQEMGVKL-GHEVGYSIR---FE-DCTSEKTILKYMTDGMLLREILSEP 239 (755)
Q Consensus 173 ~--------~~~~ilv~~P~r~la~q~a~~~~~~~~~~~-g~~vg~~~~---~~-~~~~~~~~I~v~T~g~Ll~~l~~~~ 239 (755)
. ..+.+++++|||+||.|++.+..+..+... -..++|.-+ .. .....+++|+|+|||+|.+.+....
T Consensus 142 ~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~ 221 (482)
T KOG0335|consen 142 EDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK 221 (482)
T ss_pred ccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce
Confidence 1 125899999999999999998887543322 112222211 11 1133579999999999999986554
Q ss_pred -CCCCCCceEeecccccCCc-cchHHHHHHHHHhcC----CCcEEEEeccCCC--HHHHHhhhCCC-CEEE----ecCcc
Q 048746 240 -NLESYSVLMVDEAHERTLS-TDILFGLLKDLIKFR----SDLKLLISSATLD--AEKFSDYFGSA-PIFK----IPGRR 306 (755)
Q Consensus 240 -~l~~~~~vIiDEaHer~~~-~d~~~~~l~~~~~~~----~~~~~il~SAT~~--~~~l~~~~~~~-~~~~----~~~~~ 306 (755)
.|.++.++|+|||| |+++ ++|...+-+++.... ...|.++||||.+ ...++.+|... .++. +.+..
T Consensus 222 i~l~~~k~~vLDEAD-rMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~ 300 (482)
T KOG0335|consen 222 ISLDNCKFLVLDEAD-RMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTS 300 (482)
T ss_pred eehhhCcEEEecchH-HhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecccc
Confidence 79999999999999 9999 999999888876642 3689999999994 44566666543 3322 22334
Q ss_pred ccceEEEecCCccchHHHHHHHHHHHHhhCCCC-----CEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCC
Q 048746 307 YPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPG-----DILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANL 381 (755)
Q Consensus 307 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l 381 (755)
..+.+......+.+.....+..+.........+ .++|||.+++.+..++.+|... .+...++||..
T Consensus 301 ~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~---------~~~~~sIhg~~ 371 (482)
T KOG0335|consen 301 ENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN---------GYPAKSIHGDR 371 (482)
T ss_pred ccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC---------CCCceeecchh
Confidence 456666666666666665444443332121234 8999999999999999999884 48889999999
Q ss_pred CHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC
Q 048746 382 PTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP 461 (755)
Q Consensus 382 ~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~ 461 (755)
++.+|.+.++.|+.|+..|+|||+|++||+|||+|++||+|++ |.+..+|+||+||+||.|.
T Consensus 372 tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDm------------------P~d~d~YvHRIGRTGR~Gn 433 (482)
T KOG0335|consen 372 TQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDM------------------PADIDDYVHRIGRTGRVGN 433 (482)
T ss_pred hhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeec------------------CcchhhHHHhccccccCCC
Confidence 9999999999999999999999999999999999999999999 9999999999999999995
Q ss_pred -CEEEEeccC
Q 048746 462 -GKCFRLYTL 470 (755)
Q Consensus 462 -G~~~~l~~~ 470 (755)
|.+..|+..
T Consensus 434 ~G~atsf~n~ 443 (482)
T KOG0335|consen 434 GGRATSFFNE 443 (482)
T ss_pred CceeEEEecc
Confidence 999999983
No 37
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-44 Score=370.10 Aligned_cols=345 Identities=20% Similarity=0.259 Sum_probs=284.3
Q ss_pred ccCCCCcccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhc---
Q 048746 97 VIDGENLDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAG--- 171 (755)
Q Consensus 97 ~~~g~~~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~--- 171 (755)
.+.|..++.|+.+|.+.++.+.++.++.+.-+..| |++|.++++....+++|+-+|-|||||| ++.|.+++-..
T Consensus 212 rv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kp-tpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~e 290 (731)
T KOG0339|consen 212 RVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKP-TPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE 290 (731)
T ss_pred eeccCCCCCCcchhhhcCchHHHHHHHhhhhcccC-CcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhh
Confidence 45677889999999999999999999999999999 9999999999999999999999999999 66676655321
Q ss_pred --ccCCCccccCccHHHHHHHHHHHHH---HHhCCccccEEeeeeecccc--CCCCceEEEeCcHHHHHHHh-CCCCCCC
Q 048746 172 --YTKQGKVGCTQPRRVAAMSVAARVS---QEMGVKLGHEVGYSIRFEDC--TSEKTILKYMTDGMLLREIL-SEPNLES 243 (755)
Q Consensus 172 --~~~~~~ilv~~P~r~la~q~a~~~~---~~~~~~~g~~vg~~~~~~~~--~~~~~~I~v~T~g~Ll~~l~-~~~~l~~ 243 (755)
...++..+|++|||+||.|+..... +-+|..+....|.....+.. ...++.|+|||||+|++++. ...++.+
T Consensus 291 L~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 291 LKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred hcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhccccee
Confidence 1345578899999999999964433 33455544444433333321 22689999999999999984 4458999
Q ss_pred CCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC--CHHHHHhhhCCCCEEEecCc----cccceEEEecCC
Q 048746 244 YSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL--DAEKFSDYFGSAPIFKIPGR----RYPVEIHYTKAP 317 (755)
Q Consensus 244 ~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~--~~~~l~~~~~~~~~~~~~~~----~~~v~~~~~~~~ 317 (755)
++++|||||+ |+.+++|...+-.+....+|+.|.|+||||+ ..+.+++-+...|+-.+.|. ...+++....++
T Consensus 371 vS~LV~DEad-rmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~ 449 (731)
T KOG0339|consen 371 VSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCP 449 (731)
T ss_pred eeEEEEechh-hhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeecc
Confidence 9999999999 9999999999988888899999999999999 56788888888888777664 234444444444
Q ss_pred cc-chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCC
Q 048746 318 EA-DYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEG 396 (755)
Q Consensus 318 ~~-~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g 396 (755)
.. .++...+.. +......|++|||++.+..+++++..|.- .++.+..+||+|.+.+|.+++..|+.+
T Consensus 450 s~~~Kl~wl~~~---L~~f~S~gkvlifVTKk~~~e~i~a~Lkl---------k~~~v~llhgdkdqa~rn~~ls~fKkk 517 (731)
T KOG0339|consen 450 SEEKKLNWLLRH---LVEFSSEGKVLIFVTKKADAEEIAANLKL---------KGFNVSLLHGDKDQAERNEVLSKFKKK 517 (731)
T ss_pred CcHHHHHHHHHH---hhhhccCCcEEEEEeccCCHHHHHHHhcc---------ccceeeeecCchhhHHHHHHHHHHhhc
Confidence 33 333333222 23334568999999999999999999876 348999999999999999999999999
Q ss_pred CcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEeccCccc
Q 048746 397 ARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTLHNY 473 (755)
Q Consensus 397 ~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~~~~ 473 (755)
...|+|||+++++|+|||++..|||||+ ..++..+.||+||+||.|. |++|+|+|+.+-
T Consensus 518 ~~~VlvatDvaargldI~~ikTVvnyD~------------------ardIdththrigrtgRag~kGvayTlvTeKDa 577 (731)
T KOG0339|consen 518 RKPVLVATDVAARGLDIPSIKTVVNYDF------------------ARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDA 577 (731)
T ss_pred CCceEEEeeHhhcCCCccccceeecccc------------------cchhHHHHHHhhhcccccccceeeEEechhhH
Confidence 9999999999999999999999999999 8999999999999999995 999999998765
No 38
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=5.3e-45 Score=366.49 Aligned_cols=345 Identities=21% Similarity=0.265 Sum_probs=274.7
Q ss_pred ccCCCCcccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHH--h--
Q 048746 97 VIDGENLDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHE--A-- 170 (755)
Q Consensus 97 ~~~g~~~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~--~-- 170 (755)
.+.|+..|.|+.+|.++.++..+++.+++.+-..| +|+|.+-+|.++.|++.|.+|-|||||| +.+|.+++- .
T Consensus 159 ~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~P-TpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~ 237 (610)
T KOG0341|consen 159 LVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHP-TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEM 237 (610)
T ss_pred EeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCC-CceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHh
Confidence 56799999999999999999999999999998899 9999999999999999999999999999 788866542 1
Q ss_pred ----cccCCCccccCccHHHHHHHHHHHHHHHh------CC---ccccEEee-eeecc-ccCCCCceEEEeCcHHHHHHH
Q 048746 171 ----GYTKQGKVGCTQPRRVAAMSVAARVSQEM------GV---KLGHEVGY-SIRFE-DCTSEKTILKYMTDGMLLREI 235 (755)
Q Consensus 171 ----~~~~~~~ilv~~P~r~la~q~a~~~~~~~------~~---~~g~~vg~-~~~~~-~~~~~~~~I~v~T~g~Ll~~l 235 (755)
....++.-++++|+|+||.|+..-+.... |. +.+..+|. .++.. .....+.+|+|+|||+|.++|
T Consensus 238 ~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL 317 (610)
T KOG0341|consen 238 MLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDML 317 (610)
T ss_pred cCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHH
Confidence 11245678899999999999987654432 21 11222331 11111 123467899999999999999
Q ss_pred hCCC-CCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCCH--HHHHhhhCCCCEEEecCccccceEE
Q 048746 236 LSEP-NLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLDA--EKFSDYFGSAPIFKIPGRRYPVEIH 312 (755)
Q Consensus 236 ~~~~-~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~--~~l~~~~~~~~~~~~~~~~~~v~~~ 312 (755)
.... .|.-++++.+|||| |+++++|...+-.++.......|.++|||||+. ..|++--.-.|+....||.-.-...
T Consensus 318 ~KK~~sLd~CRyL~lDEAD-RmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsld 396 (610)
T KOG0341|consen 318 AKKIMSLDACRYLTLDEAD-RMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLD 396 (610)
T ss_pred HHhhccHHHHHHhhhhhHH-HHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchh
Confidence 7664 78888999999999 999999998888887777788999999999954 3555554445666666663322211
Q ss_pred EecCCccchH--HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHh
Q 048746 313 YTKAPEADYI--DAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIF 390 (755)
Q Consensus 313 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~ 390 (755)
... +-+|+ ++.+..+++.... ...++|||+..+.+++.+.++|--. ++.++.+||+-.+++|...+
T Consensus 397 ViQ--evEyVkqEaKiVylLeCLQK-T~PpVLIFaEkK~DVD~IhEYLLlK---------GVEavaIHGGKDQedR~~ai 464 (610)
T KOG0341|consen 397 VIQ--EVEYVKQEAKIVYLLECLQK-TSPPVLIFAEKKADVDDIHEYLLLK---------GVEAVAIHGGKDQEDRHYAI 464 (610)
T ss_pred HHH--HHHHHHhhhhhhhHHHHhcc-CCCceEEEeccccChHHHHHHHHHc---------cceeEEeecCcchhHHHHHH
Confidence 111 11222 2334445554433 3678999999999999999998753 48899999999999999999
Q ss_pred CCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEecc
Q 048746 391 EPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYT 469 (755)
Q Consensus 391 ~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~ 469 (755)
+.|+.|+.+||||||+|+.|+|+|+|.+|||||+ |..+++|+||+||+||.|. |.+.+|++
T Consensus 465 ~afr~gkKDVLVATDVASKGLDFp~iqHVINyDM------------------P~eIENYVHRIGRTGRsg~~GiATTfIN 526 (610)
T KOG0341|consen 465 EAFRAGKKDVLVATDVASKGLDFPDIQHVINYDM------------------PEEIENYVHRIGRTGRSGKTGIATTFIN 526 (610)
T ss_pred HHHhcCCCceEEEecchhccCCCccchhhccCCC------------------hHHHHHHHHHhcccCCCCCcceeeeeec
Confidence 9999999999999999999999999999999999 9999999999999999995 99999998
Q ss_pred Cccc
Q 048746 470 LHNY 473 (755)
Q Consensus 470 ~~~~ 473 (755)
+...
T Consensus 527 K~~~ 530 (610)
T KOG0341|consen 527 KNQE 530 (610)
T ss_pred ccch
Confidence 7644
No 39
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-43 Score=349.15 Aligned_cols=331 Identities=21% Similarity=0.244 Sum_probs=267.4
Q ss_pred cCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHH
Q 048746 109 ELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRV 186 (755)
Q Consensus 109 ~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~ 186 (755)
+|++..+...++..|.+.+++.| .|+|++.|+....|+++++.|..|+||| +.+|.+-........-+.+|++|||+
T Consensus 86 efEd~~Lkr~LLmgIfe~G~ekP-SPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtre 164 (459)
T KOG0326|consen 86 EFEDYCLKRELLMGIFEKGFEKP-SPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRE 164 (459)
T ss_pred cHHHhhhhHHHHHHHHHhccCCC-CCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecch
Confidence 68899999999999999999999 9999999999999999999999999999 78886644332223347899999999
Q ss_pred HHHHHHHHHHHHhCCccc----cEEeeeeecccc--CCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCCcc
Q 048746 187 AAMSVAARVSQEMGVKLG----HEVGYSIRFEDC--TSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTLST 259 (755)
Q Consensus 187 la~q~a~~~~~~~~~~~g----~~vg~~~~~~~~--~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~~~ 259 (755)
||.|+. +++++++...| .++|...-.++. ..+..+++|+|||++++++.... .++++..+|+|||| ..+..
T Consensus 165 lALQtS-qvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD-KlLs~ 242 (459)
T KOG0326|consen 165 LALQTS-QVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD-KLLSV 242 (459)
T ss_pred hhHHHH-HHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh-hhhch
Confidence 999886 34444544444 344432222221 33567999999999999987665 79999999999999 89999
Q ss_pred chHHHHHHHHHhcCCCcEEEEeccCCC--HHHHHhhhCCCC-EEEecCc--cccceEEEecCCccchHHHHHHHHHHHHh
Q 048746 260 DILFGLLKDLIKFRSDLKLLISSATLD--AEKFSDYFGSAP-IFKIPGR--RYPVEIHYTKAPEADYIDAAIVTVLQIHV 334 (755)
Q Consensus 260 d~~~~~l~~~~~~~~~~~~il~SAT~~--~~~l~~~~~~~~-~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (755)
+|...+-+.+...+++.|++++|||.+ +..|.+-+...| .+..-.. ...|.++|....+..++...-.. ..
T Consensus 243 ~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntL----fs 318 (459)
T KOG0326|consen 243 DFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTL----FS 318 (459)
T ss_pred hhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHH----HH
Confidence 999888888888999999999999994 455554443333 3333322 34577888777666655532222 22
Q ss_pred hCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCC
Q 048746 335 TQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTID 414 (755)
Q Consensus 335 ~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip 414 (755)
...-.+.+||||+.+.++.+++.+.+.+ +.+..+|+.|.++.|.++|..|++|.++.|||||.+.|||||+
T Consensus 319 kLqINQsIIFCNS~~rVELLAkKITelG---------yscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiq 389 (459)
T KOG0326|consen 319 KLQINQSIIFCNSTNRVELLAKKITELG---------YSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQ 389 (459)
T ss_pred HhcccceEEEeccchHhHHHHHHHHhcc---------chhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccc
Confidence 2234678999999999999999999865 7788899999999999999999999999999999999999999
Q ss_pred CeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEeccCccc
Q 048746 415 GIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTLHNY 473 (755)
Q Consensus 415 ~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~~~~ 473 (755)
+|++|||+|+ |.+.++|.||+||+||.|. |.++.|.+-++.
T Consensus 390 avNvVINFDf------------------pk~aEtYLHRIGRsGRFGhlGlAInLityedr 431 (459)
T KOG0326|consen 390 AVNVVINFDF------------------PKNAETYLHRIGRSGRFGHLGLAINLITYEDR 431 (459)
T ss_pred eeeEEEecCC------------------CCCHHHHHHHccCCccCCCcceEEEEEehhhh
Confidence 9999999999 9999999999999999995 999999986654
No 40
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1e-42 Score=392.78 Aligned_cols=333 Identities=19% Similarity=0.246 Sum_probs=249.9
Q ss_pred cccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHH--Hhcc-----cCCCc
Q 048746 107 HSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLH--EAGY-----TKQGK 177 (755)
Q Consensus 107 ~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~--~~~~-----~~~~~ 177 (755)
...|.++++++.+++.|.+.++..| +++|.++++.+.+|+++|++|||||||| +++|.+-. .... ....+
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~-~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYC-TPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 3468888999999999999999888 9999999999999999999999999999 56664422 1110 11358
Q ss_pred cccCccHHHHHHHHHHHHHHHh---CCccccEEeeee---eccccCCCCceEEEeCcHHHHHHHhCC-CCCCCCCceEee
Q 048746 178 VGCTQPRRVAAMSVAARVSQEM---GVKLGHEVGYSI---RFEDCTSEKTILKYMTDGMLLREILSE-PNLESYSVLMVD 250 (755)
Q Consensus 178 ilv~~P~r~la~q~a~~~~~~~---~~~~g~~vg~~~---~~~~~~~~~~~I~v~T~g~Ll~~l~~~-~~l~~~~~vIiD 250 (755)
++|++|||+||.|+++.+.... +..+...+|... ..........+|+|+||++|+..+... ..++++++||||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 9999999999999998887643 333322333110 001112345799999999999887654 478999999999
Q ss_pred cccccCCccchHHHHHHHHHhc--CCCcEEEEeccCCC--HHHHHhhhCCCCEE-EecCcc---ccceEEEecCCccchH
Q 048746 251 EAHERTLSTDILFGLLKDLIKF--RSDLKLLISSATLD--AEKFSDYFGSAPIF-KIPGRR---YPVEIHYTKAPEADYI 322 (755)
Q Consensus 251 EaHer~~~~d~~~~~l~~~~~~--~~~~~~il~SAT~~--~~~l~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~~~ 322 (755)
||| +.++.++...+.+.+... ..+.|++++|||+. ...+.+.+...+.. .+.... ..+..++......+..
T Consensus 245 Eah-~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~ 323 (475)
T PRK01297 245 EAD-RMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKY 323 (475)
T ss_pred hHH-HHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHH
Confidence 999 666666655544444433 23579999999984 44555555444433 222221 1233444333333222
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEE
Q 048746 323 DAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVL 402 (755)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlv 402 (755)
. .+..+.......++||||+++++++.+++.|... ++.+..+||++++++|.++++.|++|+.+|||
T Consensus 324 ~----~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLv 390 (475)
T PRK01297 324 K----LLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD---------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLV 390 (475)
T ss_pred H----HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEE
Confidence 2 3333334445578999999999999999999764 36788899999999999999999999999999
Q ss_pred eCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCcc
Q 048746 403 ATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHN 472 (755)
Q Consensus 403 aT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~ 472 (755)
||+++++|||||++++||++|+ |.|..+|+||+|||||.| .|.++.++++++
T Consensus 391 aT~~l~~GIDi~~v~~VI~~~~------------------P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 391 ATDVAGRGIHIDGISHVINFTL------------------PEDPDDYVHRIGRTGRAGASGVSISFAGEDD 443 (475)
T ss_pred EccccccCCcccCCCEEEEeCC------------------CCCHHHHHHhhCccCCCCCCceEEEEecHHH
Confidence 9999999999999999999999 999999999999999999 499999998764
No 41
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5.3e-43 Score=388.63 Aligned_cols=335 Identities=16% Similarity=0.196 Sum_probs=253.4
Q ss_pred ccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhc--cHHHHHHHhcccCCCccccCcc
Q 048746 106 LHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTT--QIPQYLHEAGYTKQGKVGCTQP 183 (755)
Q Consensus 106 ~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~--~ip~~l~~~~~~~~~~ilv~~P 183 (755)
...+|.++++++.+++++.+.++..| +++|.++++.+.++++++++||||||||. ++|.+........+.++++++|
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~-~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~P 104 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKP-SAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAP 104 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECC
Confidence 45789999999999999999999988 99999999999999999999999999994 3443322221123458999999
Q ss_pred HHHHHHHHHHHHHHHhCCcccc----EEeeeeecc--ccCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccC
Q 048746 184 RRVAAMSVAARVSQEMGVKLGH----EVGYSIRFE--DCTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERT 256 (755)
Q Consensus 184 ~r~la~q~a~~~~~~~~~~~g~----~vg~~~~~~--~~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~ 256 (755)
+++|+.|+.+.+... +...+. .+|.....+ .....+.+|+|+||+.|.+.+.... .+.++++||||||| +.
T Consensus 105 t~~L~~Q~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah-~~ 182 (401)
T PTZ00424 105 TRELAQQIQKVVLAL-GDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD-EM 182 (401)
T ss_pred CHHHHHHHHHHHHHH-hhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH-HH
Confidence 999999998776653 322222 223111101 1122456899999999999886654 68999999999999 55
Q ss_pred CccchHHHHHHHHHhcCCCcEEEEeccCCCHH--HHHhhhCCCCEE-EecCc---cccceEEEecCCccchHHHHHHHHH
Q 048746 257 LSTDILFGLLKDLIKFRSDLKLLISSATLDAE--KFSDYFGSAPIF-KIPGR---RYPVEIHYTKAPEADYIDAAIVTVL 330 (755)
Q Consensus 257 ~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~~--~l~~~~~~~~~~-~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~ 330 (755)
...++...+...+....++.|++++|||++.+ .+...+...+.. .+... ...+..++.......+.. ..+.
T Consensus 183 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ 259 (401)
T PTZ00424 183 LSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKF---DTLC 259 (401)
T ss_pred HhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHH---HHHH
Confidence 55555555555566677889999999999543 334334333332 22222 122344444433322222 2333
Q ss_pred HHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCccccc
Q 048746 331 QIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETS 410 (755)
Q Consensus 331 ~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~G 410 (755)
.+.......++||||++++.++.+++.|... ++.+..+||+|++++|..+++.|++|+.+|||||+++++|
T Consensus 260 ~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~G 330 (401)
T PTZ00424 260 DLYETLTITQAIIYCNTRRKVDYLTKKMHER---------DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARG 330 (401)
T ss_pred HHHHhcCCCeEEEEecCcHHHHHHHHHHHHC---------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCC
Confidence 3444445678999999999999999999874 3678899999999999999999999999999999999999
Q ss_pred CcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 411 LTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 411 idip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
||+|++++||++|+ |.|..+|+||+|||||.| .|.|+.|+++++.
T Consensus 331 iDip~v~~VI~~~~------------------p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~ 376 (401)
T PTZ00424 331 IDVQQVSLVINYDL------------------PASPENYIHRIGRSGRFGRKGVAINFVTPDDI 376 (401)
T ss_pred cCcccCCEEEEECC------------------CCCHHHEeecccccccCCCCceEEEEEcHHHH
Confidence 99999999999999 999999999999999998 5999999987654
No 42
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-42 Score=361.52 Aligned_cols=345 Identities=18% Similarity=0.206 Sum_probs=269.8
Q ss_pred cCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcc------cCCCcccc
Q 048746 109 ELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGY------TKQGKVGC 180 (755)
Q Consensus 109 ~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~------~~~~~ilv 180 (755)
.|..+++++.+...|...-..-..+.+|.++||.+.+++|++|.++|||||| |++|..-..... ..+..++|
T Consensus 137 ~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALV 216 (708)
T KOG0348|consen 137 AFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALV 216 (708)
T ss_pred cchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEE
Confidence 5899999999999988765444449999999999999999999999999999 888866433222 23558999
Q ss_pred CccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCC------CceEEEeCcHHHHHHHhCCC--CCCCCCceEeecc
Q 048746 181 TQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSE------KTILKYMTDGMLLREILSEP--NLESYSVLMVDEA 252 (755)
Q Consensus 181 ~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~------~~~I~v~T~g~Ll~~l~~~~--~l~~~~~vIiDEa 252 (755)
++|||+||.|+++.+.+.+....-..-|+.++++.+.++ +..|+|+|||+|+++|.+.. .++++.+||+||+
T Consensus 217 ivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEa 296 (708)
T KOG0348|consen 217 IVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEA 296 (708)
T ss_pred EechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecch
Confidence 999999999999999987665444445666777776654 67899999999999998765 5788999999999
Q ss_pred cccCCccchHHHHHHHHHhc-------C------CCcEEEEeccCC--CHHHHHhhhCCCCEEEec--------------
Q 048746 253 HERTLSTDILFGLLKDLIKF-------R------SDLKLLISSATL--DAEKFSDYFGSAPIFKIP-------------- 303 (755)
Q Consensus 253 Her~~~~d~~~~~l~~~~~~-------~------~~~~~il~SAT~--~~~~l~~~~~~~~~~~~~-------------- 303 (755)
| |.++.+|...+-.++... . +..+-+++|||+ .+.++++.-...|++.--
T Consensus 297 D-rlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~ 375 (708)
T KOG0348|consen 297 D-RLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAV 375 (708)
T ss_pred h-HHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhh
Confidence 9 999988876655544322 1 236789999999 566788765555554330
Q ss_pred -----C----------ccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcc----
Q 048746 304 -----G----------RRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRG---- 364 (755)
Q Consensus 304 -----~----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~---- 364 (755)
+ -+..+.++|...|..-.+-.....+.+........+++||+.+.+.++.=++.+.+....
T Consensus 376 ~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~ 455 (708)
T KOG0348|consen 376 QEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEG 455 (708)
T ss_pred hhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccccc
Confidence 0 011234455555555555555566666666666779999999999999988888764422
Q ss_pred c---------CCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCC
Q 048746 365 L---------GSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTG 435 (755)
Q Consensus 365 ~---------~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~ 435 (755)
. .+-..++.+..+||+|++++|..+|+.|......||+|||+|+||+|+|+|++||.|+.
T Consensus 456 ~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~----------- 524 (708)
T KOG0348|consen 456 SSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDP----------- 524 (708)
T ss_pred ccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCC-----------
Confidence 0 01112467888999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCHHhHHhhhcccCCCCC-CEEEEeccCcc
Q 048746 436 MESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTLHN 472 (755)
Q Consensus 436 ~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~~~ 472 (755)
|.+.++|+||+||+.|.|. |.+..+..+.+
T Consensus 525 -------P~s~adylHRvGRTARaG~kG~alLfL~P~E 555 (708)
T KOG0348|consen 525 -------PFSTADYLHRVGRTARAGEKGEALLFLLPSE 555 (708)
T ss_pred -------CCCHHHHHHHhhhhhhccCCCceEEEecccH
Confidence 9999999999999999994 88887776654
No 43
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-41 Score=339.94 Aligned_cols=341 Identities=18% Similarity=0.206 Sum_probs=270.3
Q ss_pred cccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcC--CeEEEEccCCCchhccHHHHHHHhc--ccCCCcccc
Q 048746 105 ELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEY--QVLVIVGETGSGKTTQIPQYLHEAG--YTKQGKVGC 180 (755)
Q Consensus 105 ~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~--~~vii~apTGsGKT~~ip~~l~~~~--~~~~~~ilv 180 (755)
-...+|+++.+.+++++.|..+++..| +.+|+.++|.++.+ +++|..+..|+|||+.+.+.++... ....+.++|
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kP-skIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iC 165 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKP-SKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCIC 165 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCc-chHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCcee
Confidence 346789999999999999999999999 99999999998775 7999999999999955554444331 122458999
Q ss_pred CccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCC---CCceEEEeCcHHHHHHHhC--CCCCCCCCceEeeccccc
Q 048746 181 TQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTS---EKTILKYMTDGMLLREILS--EPNLESYSVLMVDEAHER 255 (755)
Q Consensus 181 ~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~---~~~~I~v~T~g~Ll~~l~~--~~~l~~~~~vIiDEaHer 255 (755)
++|+|+||.|+.+-+.+ +|...+....|.++...... -..+|+++|||.+++++.. -..+..+.++|+|||+ .
T Consensus 166 LaPtrELA~Q~~eVv~e-MGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD-~ 243 (477)
T KOG0332|consen 166 LAPTRELAPQTGEVVEE-MGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD-V 243 (477)
T ss_pred eCchHHHHHHHHHHHHH-hcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchh-h
Confidence 99999999999966654 88887888889888763322 2468999999999999865 2378889999999999 6
Q ss_pred CCccc-hHHHHHHHHHhcCCCcEEEEeccCC--CHHHHHhhh-CCCCEEEecCc---cccceEEEecCCccchHHHHHHH
Q 048746 256 TLSTD-ILFGLLKDLIKFRSDLKLLISSATL--DAEKFSDYF-GSAPIFKIPGR---RYPVEIHYTKAPEADYIDAAIVT 328 (755)
Q Consensus 256 ~~~~d-~~~~~l~~~~~~~~~~~~il~SAT~--~~~~l~~~~-~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~ 328 (755)
++++. |.-.-.++....+++.|++++|||. .+..|+.-+ .++..+.+..+ ..++.++|..++..+..-. .
T Consensus 244 Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~---~ 320 (477)
T KOG0332|consen 244 MIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQ---A 320 (477)
T ss_pred hhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHH---H
Confidence 76665 3333344444456699999999999 345666544 44445555444 5688999998876643333 3
Q ss_pred HHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCccc
Q 048746 329 VLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAE 408 (755)
Q Consensus 329 ~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~ 408 (755)
+.++.....-|+.||||.+++.+.+++..|...+ ..+..+||+|..++|..+++.|+.|..+|||+||+.+
T Consensus 321 l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~G---------h~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~A 391 (477)
T KOG0332|consen 321 LVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEG---------HQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCA 391 (477)
T ss_pred HHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcC---------ceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhh
Confidence 4444444446889999999999999999999854 7899999999999999999999999999999999999
Q ss_pred ccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEeccCcc
Q 048746 409 TSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTLHN 472 (755)
Q Consensus 409 ~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~~~ 472 (755)
||||++.|.+||||++. .. ...-.+.+.|+||+||+||.|. |.++.|...+.
T Consensus 392 RGiDv~qVs~VvNydlP-------~~-----~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 392 RGIDVAQVSVVVNYDLP-------VK-----YTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKD 444 (477)
T ss_pred cccccceEEEEEecCCc-------cc-----cCCCCCHHHHHHHhcccccccccceEEEeecccC
Confidence 99999999999999991 10 0112578999999999999995 99999887543
No 44
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.6e-40 Score=386.56 Aligned_cols=332 Identities=19% Similarity=0.213 Sum_probs=237.2
Q ss_pred cchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHH
Q 048746 115 KEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVA 192 (755)
Q Consensus 115 ~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a 192 (755)
+++.+.+.+.+.++..| |++|.++++.+.+|+++++++||||||| +++|.+-... ..++.++||++|||+||.|+.
T Consensus 21 l~~~l~~~L~~~g~~~p-~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~-~~~~~~aL~l~PtraLa~q~~ 98 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRP-WQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALA-DDPRATALYLAPTKALAADQL 98 (742)
T ss_pred CCHHHHHHHHHcCCCcC-CHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHh-hCCCcEEEEEcChHHHHHHHH
Confidence 57788899988888888 9999999999999999999999999999 6677553222 123468999999999999999
Q ss_pred HHHHHHh--CCccccEEeeeeecc-ccCCCCceEEEeCcHHHHHHHhCC-----CCCCCCCceEeecccccCCcc--chH
Q 048746 193 ARVSQEM--GVKLGHEVGYSIRFE-DCTSEKTILKYMTDGMLLREILSE-----PNLESYSVLMVDEAHERTLST--DIL 262 (755)
Q Consensus 193 ~~~~~~~--~~~~g~~vg~~~~~~-~~~~~~~~I~v~T~g~Ll~~l~~~-----~~l~~~~~vIiDEaHer~~~~--d~~ 262 (755)
+++.+.. +..++...|.....+ .....+.+|+++||++|...+... ..++++++||||||| +.... ..+
T Consensus 99 ~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah-~~~g~fg~~~ 177 (742)
T TIGR03817 99 RAVRELTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECH-SYRGVFGSHV 177 (742)
T ss_pred HHHHHhccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChh-hccCccHHHH
Confidence 9988743 122222222111000 012245799999999997654322 137899999999999 44321 112
Q ss_pred HHHHHHHHh----cCCCcEEEEeccCC-CHHHHHhhhCCCCEEEecCcccc---ceEEEecCCc------------cchH
Q 048746 263 FGLLKDLIK----FRSDLKLLISSATL-DAEKFSDYFGSAPIFKIPGRRYP---VEIHYTKAPE------------ADYI 322 (755)
Q Consensus 263 ~~~l~~~~~----~~~~~~~il~SAT~-~~~~l~~~~~~~~~~~~~~~~~~---v~~~~~~~~~------------~~~~ 322 (755)
..+++++.. ...+.|+|++|||+ ++..+.+.+.+.++..+.....| ..+.+...+. ....
T Consensus 178 ~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~ 257 (742)
T TIGR03817 178 ALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSAS 257 (742)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchH
Confidence 223333322 34568999999999 66667766666666555432221 2222221110 0011
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEE
Q 048746 323 DAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVL 402 (755)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlv 402 (755)
......+..+.. .+.++||||+|++.++.++..|.+........ ....+..+||++++++|.++++.|++|+.++||
T Consensus 258 ~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~-l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLV 334 (742)
T TIGR03817 258 AEAADLLADLVA--EGARTLTFVRSRRGAELVAAIARRLLGEVDPD-LAERVAAYRAGYLPEDRRELERALRDGELLGVA 334 (742)
T ss_pred HHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccc-cccchhheecCCCHHHHHHHHHHHHcCCceEEE
Confidence 122222333222 25799999999999999999988754321111 125678899999999999999999999999999
Q ss_pred eCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEeccC
Q 048746 403 ATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTL 470 (755)
Q Consensus 403 aT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~ 470 (755)
|||++++|||||+|++||++|+ |.+.++|+||+|||||.|. |.++.+.+.
T Consensus 335 aTd~lerGIDI~~vd~VI~~~~------------------P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 335 TTNALELGVDISGLDAVVIAGF------------------PGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred ECchHhccCCcccccEEEEeCC------------------CCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 9999999999999999999999 9999999999999999995 999988864
No 45
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.1e-40 Score=350.68 Aligned_cols=458 Identities=20% Similarity=0.172 Sum_probs=325.8
Q ss_pred CCCCccchHHHHHHHHHhcCCCChHHHHHHHHH-HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHH
Q 048746 110 LPDKSKEKSALEMLQEERKTLPIYPYRDELLQA-VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAA 188 (755)
Q Consensus 110 f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~-i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la 188 (755)
..++.++++. +.+.+.++..-+.|+|.-++++ +.+|.|.+++++|+||||.+....=....+..+++.++++|..+||
T Consensus 196 vdeLdipe~f-k~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALA 274 (830)
T COG1202 196 VDELDIPEKF-KRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALA 274 (830)
T ss_pred ccccCCcHHH-HHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhh
Confidence 4455555554 4455555556678999999999 8999999999999999995544443333344567999999999999
Q ss_pred HHHHHHHHHHh---CCccccEEeeee-ec-----cccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeeccc-----c
Q 048746 189 MSVAARVSQEM---GVKLGHEVGYSI-RF-----EDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAH-----E 254 (755)
Q Consensus 189 ~q~a~~~~~~~---~~~~g~~vg~~~-~~-----~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaH-----e 254 (755)
+|-++.|.+.+ |..+...||.+- +- ...++..++|+|+|.+-+-..+.....+.+++.|||||+| |
T Consensus 275 NQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deE 354 (830)
T COG1202 275 NQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEE 354 (830)
T ss_pred cchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchh
Confidence 99999998765 444444555211 11 1234568999999998887778777899999999999999 3
Q ss_pred cCCccchHHHHHHHHHhcCCCcEEEEeccCC-CHHHHHhhhCCCCEEEecCccccceEEEecCC-ccchHHHHHHHHHHH
Q 048746 255 RTLSTDILFGLLKDLIKFRSDLKLLISSATL-DAEKFSDYFGSAPIFKIPGRRYPVEIHYTKAP-EADYIDAAIVTVLQI 332 (755)
Q Consensus 255 r~~~~d~~~~~l~~~~~~~~~~~~il~SAT~-~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~ 332 (755)
|+. -+.+++.++....++.|+|.+|||+ |++.+++.++ ...+....|+.|++-|..... ..++.+ .+..+.+.
T Consensus 355 RG~---RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~-a~lV~y~~RPVplErHlvf~~~e~eK~~-ii~~L~k~ 429 (830)
T COG1202 355 RGP---RLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLG-AKLVLYDERPVPLERHLVFARNESEKWD-IIARLVKR 429 (830)
T ss_pred ccc---chhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhC-CeeEeecCCCCChhHeeeeecCchHHHH-HHHHHHHH
Confidence 433 3456677777788999999999999 9999999997 456667889999988876655 333333 22222221
Q ss_pred -H----hhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcc
Q 048746 333 -H----VTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIA 407 (755)
Q Consensus 333 -~----~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~ 407 (755)
. ...-.|++|||++|+..|+.++..|...+ +.+.++|+||+..+|..+...|.++.+.++|+|.++
T Consensus 430 E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG---------~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL 500 (830)
T COG1202 430 EFSTESSKGYRGQTIVFTYSRRRCHELADALTGKG---------LKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAAL 500 (830)
T ss_pred HHhhhhccCcCCceEEEecchhhHHHHHHHhhcCC---------cccccccCCCcHHHHHHHHHHHhcCCcceEeehhhh
Confidence 1 12235899999999999999999998753 888999999999999999999999999999999999
Q ss_pred cccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC---CCEEEEeccCccccccCCCCCccc
Q 048746 408 ETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG---PGKCFRLYTLHNYHKDMDDNTVPE 484 (755)
Q Consensus 408 ~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g---~G~~~~l~~~~~~~~~l~~~~~pe 484 (755)
+.|+|+|+-.+|+.+=. +...|.|..+|.||.|||||.+ .|++|.+..+..-...-.+.+..|
T Consensus 501 ~AGVDFPASQVIFEsLa--------------MG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEde 566 (830)
T COG1202 501 AAGVDFPASQVIFESLA--------------MGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDE 566 (830)
T ss_pred hcCCCCchHHHHHHHHH--------------cccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHH
Confidence 99999997666554333 4455999999999999999998 599999987653322222222222
Q ss_pred h----hccCchHHHH----------HHHHcCCCC-------CCcCCCCCCCcHHHHHHHHHHHHHccCccCCC---CCCH
Q 048746 485 I----QRTNLANVVL----------ILKSLGIDD-------LVNFDFIDPPPEEALLKALELLFALSALNKLG---ELTK 540 (755)
Q Consensus 485 i----~r~~l~~~~L----------~l~~~~~~~-------~~~~~~~~~p~~~~i~~a~~~L~~~g~l~~~~---~lT~ 540 (755)
+ +.++++++.. -|.+.|+.+ +....+- ..-....++..|.+.|+|..+| ++|+
T Consensus 567 vA~kLL~s~~e~V~vey~ee~e~e~vLA~~~v~~s~~~i~~v~~~~~g---~~~~~~k~l~~Lee~g~i~~~G~~v~~T~ 643 (830)
T COG1202 567 VAFKLLESEPEPVIVEYDEEDEEENVLASAGVTNSLSVIERVNSLMLG---AAFDPKKALSKLEEYGMIKKKGNIVRPTP 643 (830)
T ss_pred HHHHHhcCCCCcceeccCcHHHHHHHHHHhhhcCcHHHHhhcChhhcc---ccCCHHHHHHHHHhcCCeeccCCEeeecc
Confidence 2 1122111110 011222211 1110000 1112467899999999999887 5999
Q ss_pred HHHHhhcCCCChhhHHHHHhcccccchHHHHhhhcccccccccccCCcchHHHHHHHHhcc
Q 048746 541 VGRRMAEFPLDPMLSKMIVASDKDKCSDEIITIAAMLSVGNSIFYRPKDKQVHADNARMNF 601 (755)
Q Consensus 541 lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~~~f~~~~~~~~~~~~~~~~f 601 (755)
.|++++..-+.|..|..|..+.. . ....+.|++.|.-+...++.+.-++.-....+..+
T Consensus 644 yGrava~~Fl~p~~a~~Ir~~v~-~-~~~pl~i~~~l~pfE~ayls~~l~r~i~~~~~~~v 702 (830)
T COG1202 644 YGRAVAMSFLGPSEAEFIREGVL-A-SMDPLRIAAELEPFENAYLSGFLKRAIESALRGRV 702 (830)
T ss_pred ccceeEEeecCchHHHHHHHhhh-c-cCChHhHhhccccccccccChHHHHHHHHHhcCCC
Confidence 99999999999999999988862 2 23456777777765555554443444334444433
No 46
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-41 Score=356.75 Aligned_cols=338 Identities=23% Similarity=0.231 Sum_probs=246.5
Q ss_pred cccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcC-CeEEEEccCCCchh--ccHHHHH---------HH--h
Q 048746 105 ELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEY-QVLVIVGETGSGKT--TQIPQYL---------HE--A 170 (755)
Q Consensus 105 ~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~-~~vii~apTGsGKT--~~ip~~l---------~~--~ 170 (755)
..+..|.++.++.+++++|...++..| +++|...|+++..+ .+++..|+|||||| |.||.+. .+ .
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~P-t~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRP-TEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCC-ccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 345569999999999999999999999 99999999997777 89999999999999 7788765 11 1
Q ss_pred cccCCCc--cccCccHHHHHHHHHHHHHHHh---CCccccEEeeee--eccccCCCCceEEEeCcHHHHHHHhCCC----
Q 048746 171 GYTKQGK--VGCTQPRRVAAMSVAARVSQEM---GVKLGHEVGYSI--RFEDCTSEKTILKYMTDGMLLREILSEP---- 239 (755)
Q Consensus 171 ~~~~~~~--ilv~~P~r~la~q~a~~~~~~~---~~~~g~~vg~~~--~~~~~~~~~~~I~v~T~g~Ll~~l~~~~---- 239 (755)
...++.+ .+|+.|||+||.|+...+.... +..+...+|.-. .-+...+...+|+|+|||+|+.++..+.
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 0112234 8999999999999998876632 444444444211 1112234578999999999999997654
Q ss_pred CCCCCCceEeecccccCCccchHHHHHHHHHh-----cCCCcEEEEeccCCCHHHHHhhhCC-----------CCE---E
Q 048746 240 NLESYSVLMVDEAHERTLSTDILFGLLKDLIK-----FRSDLKLLISSATLDAEKFSDYFGS-----------API---F 300 (755)
Q Consensus 240 ~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-----~~~~~~~il~SAT~~~~~l~~~~~~-----------~~~---~ 300 (755)
.+.+++++|+||+| |++.-+.+..+-+.+.. ..+..|.+++|||+.....+..-.. .++ +
T Consensus 337 ~~k~vkcLVlDEaD-RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 337 NFKKVKCLVLDEAD-RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhceEEEEccHH-HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 57889999999999 99988876555444322 3456899999999943322111000 000 0
Q ss_pred -EecCccccceEEEecCCccchHHHHHHHHHHH-----------HhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCC
Q 048746 301 -KIPGRRYPVEIHYTKAPEADYIDAAIVTVLQI-----------HVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSK 368 (755)
Q Consensus 301 -~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~ 368 (755)
.+.-+..| .+. ...+............+.. +...-+|++|||||+.+.+..++-+|...
T Consensus 416 k~ig~~~kp-kii-D~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L------- 486 (731)
T KOG0347|consen 416 KKIGFRGKP-KII-DLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL------- 486 (731)
T ss_pred HHhCccCCC-eeE-ecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc-------
Confidence 00001111 110 0111111111111111111 11233799999999999999999999874
Q ss_pred CCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHh
Q 048746 369 IAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKAS 448 (755)
Q Consensus 369 ~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~ 448 (755)
++..+++|+.|.+.+|.+.++.|++...-||||||+|+||+|||+|.|||+|-. |.+.+-
T Consensus 487 --~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqV------------------Prtsei 546 (731)
T KOG0347|consen 487 --DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQV------------------PRTSEI 546 (731)
T ss_pred --CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeec------------------CCccce
Confidence 377889999999999999999999999999999999999999999999999999 999999
Q ss_pred HHhhhcccCCCCC-CEEEEeccCccc
Q 048746 449 AMQRAGRSGRTGP-GKCFRLYTLHNY 473 (755)
Q Consensus 449 ~~QR~GRaGR~g~-G~~~~l~~~~~~ 473 (755)
|+||.||++|++. |..+.|+.+.+.
T Consensus 547 YVHRSGRTARA~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 547 YVHRSGRTARANSEGVSVMLCGPQEV 572 (731)
T ss_pred eEecccccccccCCCeEEEEeChHHh
Confidence 9999999999995 999999987653
No 47
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.2e-40 Score=334.86 Aligned_cols=333 Identities=20% Similarity=0.213 Sum_probs=268.3
Q ss_pred ccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHH--HHHhcc----cCCCccc
Q 048746 108 SELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQY--LHEAGY----TKQGKVG 179 (755)
Q Consensus 108 ~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~--l~~~~~----~~~~~il 179 (755)
.+|+++++.+.+++++.+.++..| +-+|+.+|+.+++|++++..|.|||||| |+||.+ ++.... ..+...+
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekp-TlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~ 97 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKP-TLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAV 97 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCc-chhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeE
Confidence 689999999999999999999999 9999999999999999999999999999 888855 322211 1234889
Q ss_pred cCccHHHHHHHHHHHHHHHh---CC--ccccEEeeeeec---cccCCCCceEEEeCcHHHHHHHhCCC--CCCCCCceEe
Q 048746 180 CTQPRRVAAMSVAARVSQEM---GV--KLGHEVGYSIRF---EDCTSEKTILKYMTDGMLLREILSEP--NLESYSVLMV 249 (755)
Q Consensus 180 v~~P~r~la~q~a~~~~~~~---~~--~~g~~vg~~~~~---~~~~~~~~~I~v~T~g~Ll~~l~~~~--~l~~~~~vIi 249 (755)
+++|||+||.|++..+.+.. +. ++..... .... .....+..+|+|+||+.+++++..+. .+..++++|+
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s-~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVv 176 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLAS-SMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVV 176 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-ccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEe
Confidence 99999999999998776532 11 1100000 0000 01123578999999999999998776 6788999999
Q ss_pred ecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC--CHHHHHhhhCCCCEEEe-cCc----cccceEEEecCCccchH
Q 048746 250 DEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL--DAEKFSDYFGSAPIFKI-PGR----RYPVEIHYTKAPEADYI 322 (755)
Q Consensus 250 DEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~--~~~~l~~~~~~~~~~~~-~~~----~~~v~~~~~~~~~~~~~ 322 (755)
|||| -.+..++...+.+.....++..|.++||||+ |...+.+.|...|++.. ... +..+.+++..+.+.+..
T Consensus 177 DEAD-LllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKf 255 (569)
T KOG0346|consen 177 DEAD-LLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKF 255 (569)
T ss_pred chhh-hhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhH
Confidence 9999 6777788888877777788999999999999 77899999988887632 222 23477888888766554
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEE
Q 048746 323 DAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVL 402 (755)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlv 402 (755)
-.. ..++.+.. -.|++|||+|+.+.+..+.-.|.+.+ +..+.+.|.||...|..|++.|..|...|||
T Consensus 256 lll-yallKL~L--I~gKsliFVNtIdr~YrLkLfLeqFG---------iksciLNseLP~NSR~Hii~QFNkG~YdivI 323 (569)
T KOG0346|consen 256 LLL-YALLKLRL--IRGKSLIFVNTIDRCYRLKLFLEQFG---------IKSCILNSELPANSRCHIIEQFNKGLYDIVI 323 (569)
T ss_pred HHH-HHHHHHHH--hcCceEEEEechhhhHHHHHHHHHhC---------cHhhhhcccccccchhhHHHHhhCcceeEEE
Confidence 322 23333222 26899999999999999999998864 7788899999999999999999999999999
Q ss_pred eCCc-----------------------------------ccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHH
Q 048746 403 ATNI-----------------------------------AETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKA 447 (755)
Q Consensus 403 aT~i-----------------------------------~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~ 447 (755)
|||. .+||||+..|..|||||+ |.+..
T Consensus 324 AtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~------------------P~t~~ 385 (569)
T KOG0346|consen 324 ATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDF------------------PETVT 385 (569)
T ss_pred EccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCC------------------CCchH
Confidence 9991 479999999999999999 99999
Q ss_pred hHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 448 SAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 448 ~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
+|+||+||++|.+ +|.+..|+.+.+.
T Consensus 386 sYIHRvGRTaRg~n~GtalSfv~P~e~ 412 (569)
T KOG0346|consen 386 SYIHRVGRTARGNNKGTALSFVSPKEE 412 (569)
T ss_pred HHHHhccccccCCCCCceEEEecchHH
Confidence 9999999999999 5999999987654
No 48
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.3e-39 Score=373.51 Aligned_cols=309 Identities=16% Similarity=0.161 Sum_probs=223.8
Q ss_pred hcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccc
Q 048746 127 RKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLG 204 (755)
Q Consensus 127 ~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g 204 (755)
++.- ++++|.++|+++..|+++++++|||+||| +++|.++. .+.+||++|+++|+.++...+.. .|....
T Consensus 457 G~~s-FRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmqDQV~~L~~-~GI~Aa 528 (1195)
T PLN03137 457 GNHS-FRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQIMNLLQ-ANIPAA 528 (1195)
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHHHHHHHHHh-CCCeEE
Confidence 4444 49999999999999999999999999999 78887653 35799999999999866656654 455443
Q ss_pred cEEeeeeeccc------c--CCCCceEEEeCcHHHHH------HHhCCCCCCCCCceEeecccccCCc-cchHHHHH--H
Q 048746 205 HEVGYSIRFED------C--TSEKTILKYMTDGMLLR------EILSEPNLESYSVLMVDEAHERTLS-TDILFGLL--K 267 (755)
Q Consensus 205 ~~vg~~~~~~~------~--~~~~~~I~v~T~g~Ll~------~l~~~~~l~~~~~vIiDEaHer~~~-~d~~~~~l--~ 267 (755)
...|.....+. . .....+|+|+||++|.. .+..-.....+++|||||||+-+-+ .+|...+. .
T Consensus 529 ~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~ 608 (1195)
T PLN03137 529 SLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLG 608 (1195)
T ss_pred EEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHH
Confidence 33332111110 1 11467999999998752 2221123455899999999943322 24554443 3
Q ss_pred HHHhcCCCcEEEEeccCCCHH---HHHhhhCCCCEEEecCccccceEEEecCCccchHHHHHHHHHHHHh-hCCCCCEEE
Q 048746 268 DLIKFRSDLKLLISSATLDAE---KFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHV-TQSPGDILV 343 (755)
Q Consensus 268 ~~~~~~~~~~~il~SAT~~~~---~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iLV 343 (755)
.+....++.+++++|||++.. .+.+.++...............++|...+..... ...+..+.. ....+..||
T Consensus 609 ~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk~---le~L~~~I~~~~~~esgII 685 (1195)
T PLN03137 609 ILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKC---LEDIDKFIKENHFDECGII 685 (1195)
T ss_pred HHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchhH---HHHHHHHHHhcccCCCcee
Confidence 455566788999999999543 4555554332222222222223444443332221 112222222 223567899
Q ss_pred EcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCC
Q 048746 344 FLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPG 423 (755)
Q Consensus 344 F~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g 423 (755)
||+++++++.++..|...+ +.+..|||+|++++|..+++.|..|..+|||||+++++|||+|+|++||++|
T Consensus 686 YC~SRke~E~LAe~L~~~G---------ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHyd 756 (1195)
T PLN03137 686 YCLSRMDCEKVAERLQEFG---------HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHS 756 (1195)
T ss_pred EeCchhHHHHHHHHHHHCC---------CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcC
Confidence 9999999999999998743 7789999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 424 FSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 424 ~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
+ |.|.++|.||+|||||.| +|.|+.||+..++
T Consensus 757 l------------------PkSiEsYyQriGRAGRDG~~g~cILlys~~D~ 789 (1195)
T PLN03137 757 L------------------PKSIEGYHQECGRAGRDGQRSSCVLYYSYSDY 789 (1195)
T ss_pred C------------------CCCHHHHHhhhcccCCCCCCceEEEEecHHHH
Confidence 9 999999999999999999 6999999987655
No 49
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4e-39 Score=362.25 Aligned_cols=308 Identities=18% Similarity=0.201 Sum_probs=223.5
Q ss_pred HhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCcc
Q 048746 126 ERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKL 203 (755)
Q Consensus 126 ~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~ 203 (755)
+++..| +++|.++++++.+++++++++||||||| +++|.+. .++.++|++|+|+|+.|+..++.. +|...
T Consensus 7 ~g~~~~-r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l~~-~gi~~ 78 (470)
T TIGR00614 7 FGLSSF-RPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQLKA-SGIPA 78 (470)
T ss_pred cCCCCC-CHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHHHH-cCCcE
Confidence 356666 9999999999999999999999999999 6777654 245789999999999999988875 56554
Q ss_pred ccEEeeeeec------cccCCCCceEEEeCcHHHHHHH--hCCC-CCCCCCceEeecccccCCc-cchHHHH--HHHHHh
Q 048746 204 GHEVGYSIRF------EDCTSEKTILKYMTDGMLLREI--LSEP-NLESYSVLMVDEAHERTLS-TDILFGL--LKDLIK 271 (755)
Q Consensus 204 g~~vg~~~~~------~~~~~~~~~I~v~T~g~Ll~~l--~~~~-~l~~~~~vIiDEaHer~~~-~d~~~~~--l~~~~~ 271 (755)
....|..... ........+|+|+||+.+.... .... ...++++|||||||...-+ .+|...+ +..+..
T Consensus 79 ~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 158 (470)
T TIGR00614 79 TFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQ 158 (470)
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHH
Confidence 3322211110 0112345789999999875321 1111 4678999999999933222 2333332 333455
Q ss_pred cCCCcEEEEeccCCCHH---HHHhhhCC-CCEEEecCccccceEEEecCCcc-chHHHHHHHHHHHHh-hCCCCCEEEEc
Q 048746 272 FRSDLKLLISSATLDAE---KFSDYFGS-APIFKIPGRRYPVEIHYTKAPEA-DYIDAAIVTVLQIHV-TQSPGDILVFL 345 (755)
Q Consensus 272 ~~~~~~~il~SAT~~~~---~l~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~iLVF~ 345 (755)
..++.+++++|||++.. .+.+.++- .+.+...+...| .++|...+.. +... .+..... ..++..+||||
T Consensus 159 ~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~-nl~~~v~~~~~~~~~----~l~~~l~~~~~~~~~IIF~ 233 (470)
T TIGR00614 159 KFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRP-NLYYEVRRKTPKILE----DLLRFIRKEFKGKSGIIYC 233 (470)
T ss_pred HcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCC-CcEEEEEeCCccHHH----HHHHHHHHhcCCCceEEEE
Confidence 66889999999999654 44445432 333332222222 1222222211 2222 2222222 33345669999
Q ss_pred CCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCc
Q 048746 346 TGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFS 425 (755)
Q Consensus 346 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~ 425 (755)
+++++++.++..|... ++.+..+||+|++++|..+++.|++|..+|||||+++++|||+|+|++||++++
T Consensus 234 ~s~~~~e~la~~L~~~---------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~- 303 (470)
T TIGR00614 234 PSRKKSEQVTASLQNL---------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL- 303 (470)
T ss_pred CcHHHHHHHHHHHHhc---------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC-
Confidence 9999999999999874 377889999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 426 KVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 426 k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
|.|.++|+||+|||||.| +|.|+.+|+..+.
T Consensus 304 -----------------P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~ 335 (470)
T TIGR00614 304 -----------------PKSMESYYQESGRAGRDGLPSECHLFYAPADI 335 (470)
T ss_pred -----------------CCCHHHHHhhhcCcCCCCCCceEEEEechhHH
Confidence 999999999999999999 6999999998655
No 50
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.3e-38 Score=367.78 Aligned_cols=419 Identities=22% Similarity=0.282 Sum_probs=287.6
Q ss_pred CChHHHHHHHHH-HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHH--HHhCCccccEE
Q 048746 131 PIYPYRDELLQA-VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVS--QEMGVKLGHEV 207 (755)
Q Consensus 131 Pl~~~Q~~~l~~-i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~--~~~~~~~g~~v 207 (755)
-+++.|+.++.. +.+++|+||++|||||||.++...+.......++++++++|+|+||.+.++++. +.+|.+++...
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~T 110 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGIST 110 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEec
Confidence 456667666666 566799999999999999776666665544335799999999999999999998 56788887777
Q ss_pred eeeeeccccCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCCccc----hHHHHHHHHHhcCCCcEEEEec
Q 048746 208 GYSIRFEDCTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTLSTD----ILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 208 g~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~~~d----~~~~~l~~~~~~~~~~~~il~S 282 (755)
|- .......-.+++|+|+||+.+-..+.+.+ ++..+++|||||+| ++..+ .+..++.+.....+..|++++|
T Consensus 111 gD-~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH--~l~d~~RG~~lE~iv~r~~~~~~~~rivgLS 187 (766)
T COG1204 111 GD-YDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIH--LLGDRTRGPVLESIVARMRRLNELIRIVGLS 187 (766)
T ss_pred CC-cccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeee--ecCCcccCceehhHHHHHHhhCcceEEEEEe
Confidence 61 11112233678999999999988776665 68899999999999 33332 4566677777777779999999
Q ss_pred cCC-CHHHHHhhhCCCCEEEecCccc------cceEEEecCC--cc----chHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q 048746 283 ATL-DAEKFSDYFGSAPIFKIPGRRY------PVEIHYTKAP--EA----DYIDAAIVTVLQIHVTQSPGDILVFLTGQE 349 (755)
Q Consensus 283 AT~-~~~~l~~~~~~~~~~~~~~~~~------~v~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~ 349 (755)
||+ |.+.+++|++..++ ....+.. |....+.... .. ..-+.....+.. ....++++||||++++
T Consensus 188 ATlpN~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~--~~~~~~qvLvFv~sR~ 264 (766)
T COG1204 188 ATLPNAEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLE--SLAEGGQVLVFVHSRK 264 (766)
T ss_pred eecCCHHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHH--HHhcCCeEEEEEecCc
Confidence 999 99999999987655 2222211 1122221111 11 111222223333 2234789999999999
Q ss_pred HHHHHHHHHHHhhcccC---------C---CC----------------CceEEEeccCCCCHHHHHHHhCCCCCCCcEEE
Q 048746 350 EIETADEILKHRTRGLG---------S---KI----------------AELIICPIYANLPTELQAKIFEPTPEGARKVV 401 (755)
Q Consensus 350 ~~~~l~~~L~~~~~~~~---------~---~~----------------~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vl 401 (755)
.+...+..|........ . .. -...+..+|++|+.++|..+.+.|+.|+++||
T Consensus 265 ~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVl 344 (766)
T COG1204 265 EAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVL 344 (766)
T ss_pred hHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEE
Confidence 99999999985221100 0 00 01236678999999999999999999999999
Q ss_pred EeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC---CCEEEEeccCc---cccc
Q 048746 402 LATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG---PGKCFRLYTLH---NYHK 475 (755)
Q Consensus 402 vaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g---~G~~~~l~~~~---~~~~ 475 (755)
|||++++.|+|.|.-++|| ....+||+..|+. +++..++.|++|||||.| -|..+.+-+.. .+..
T Consensus 345 v~TpTLA~GVNLPA~~VII----k~~~~y~~~~g~~-----~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~ 415 (766)
T COG1204 345 VSTPTLAAGVNLPARTVII----KDTRRYDPKGGIV-----DIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLA 415 (766)
T ss_pred EechHHhhhcCCcceEEEE----eeeEEEcCCCCeE-----ECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHH
Confidence 9999999999999888888 7788999866633 899999999999999999 36666665322 2222
Q ss_pred cCCCCCccchhccCchHHH-HHHHHcCC---CCCCcC-------------CC--CCCCcHHHHHHHHHHHHHcc-CccCC
Q 048746 476 DMDDNTVPEIQRTNLANVV-LILKSLGI---DDLVNF-------------DF--IDPPPEEALLKALELLFALS-ALNKL 535 (755)
Q Consensus 476 ~l~~~~~pei~r~~l~~~~-L~l~~~~~---~~~~~~-------------~~--~~~p~~~~i~~a~~~L~~~g-~l~~~ 535 (755)
.......||...+.|..-. +....+++ .+.... +. ..--....+..+++.|.+.+ .++..
T Consensus 416 ~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~ 495 (766)
T COG1204 416 ELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDAD 495 (766)
T ss_pred HHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeecc
Confidence 2333444554222111110 11000110 000000 00 00124567788999999986 56553
Q ss_pred C---CCCHHHHHhhcCCCChhhHHHHHhcccc
Q 048746 536 G---ELTKVGRRMAEFPLDPMLSKMIVASDKD 564 (755)
Q Consensus 536 ~---~lT~lG~~~~~~pl~p~~~~~l~~~~~~ 564 (755)
. ..|++|+.+++++++|..++.+......
T Consensus 496 ~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~ 527 (766)
T COG1204 496 WEALHATELGKLVSRLYIDPESAKIFRDLLAE 527 (766)
T ss_pred ccccchhHHHHHhhhccCCHHHHHHHHHHHHH
Confidence 3 5899999999999999999999876553
No 51
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-39 Score=364.23 Aligned_cols=342 Identities=19% Similarity=0.239 Sum_probs=278.1
Q ss_pred ccCCCCcccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcc--
Q 048746 97 VIDGENLDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGY-- 172 (755)
Q Consensus 97 ~~~g~~~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~-- 172 (755)
.+.|...+.|+.+|...+++..++..+++.++..| +++|.++||+|..|++||.+|.|||||| +.+|.+.+....
T Consensus 354 ~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~-~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~ 432 (997)
T KOG0334|consen 354 KVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKP-TPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP 432 (997)
T ss_pred eeccCCCCcccchHhhCCchHHHHHHHHHhcCCCC-cchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC
Confidence 35578899999999999999999999999999987 9999999999999999999999999999 778888654322
Q ss_pred ---cCCCccccCccHHHHHHHHHHHHHHHh---CCccccEEeeeeecccc---CCCCceEEEeCcHHHHHHHhCCC----
Q 048746 173 ---TKQGKVGCTQPRRVAAMSVAARVSQEM---GVKLGHEVGYSIRFEDC---TSEKTILKYMTDGMLLREILSEP---- 239 (755)
Q Consensus 173 ---~~~~~ilv~~P~r~la~q~a~~~~~~~---~~~~g~~vg~~~~~~~~---~~~~~~I~v~T~g~Ll~~l~~~~---- 239 (755)
..++..++++|||+||.|+.+.+.+.. +..+...+|. ++.... ...++.|+|||||+.++.+..+.
T Consensus 433 ~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg-~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvt 511 (997)
T KOG0334|consen 433 LEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGG-SGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVT 511 (997)
T ss_pred hhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCC-ccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccc
Confidence 235688999999999999988776643 3333333331 111111 22459999999999999885432
Q ss_pred CCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCC--HHHHHhhhCCCCEEEec-Cc---cccceEEE
Q 048746 240 NLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLD--AEKFSDYFGSAPIFKIP-GR---RYPVEIHY 313 (755)
Q Consensus 240 ~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~--~~~l~~~~~~~~~~~~~-~~---~~~v~~~~ 313 (755)
.+.++.++|+|||| |+++..|.....+++...+++.|++++|||++ .+.++.-....|+..+. ++ ...|++.+
T Consensus 512 nlrR~t~lv~deaD-rmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v 590 (997)
T KOG0334|consen 512 NLRRVTYLVLDEAD-RMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVV 590 (997)
T ss_pred cccccceeeechhh-hhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEE
Confidence 57777899999999 99999999998888888999999999999994 45666655556665433 33 23566666
Q ss_pred ecCC-ccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCC
Q 048746 314 TKAP-EADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEP 392 (755)
Q Consensus 314 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~ 392 (755)
..++ +...+......+-. ....+++||||...+.+..+.+.|.+. ++.+..+||+.++.+|..+++.
T Consensus 591 ~V~~~e~eKf~kL~eLl~e---~~e~~~tiiFv~~qe~~d~l~~~L~~a---------g~~~~slHGgv~q~dR~sti~d 658 (997)
T KOG0334|consen 591 RVCAIENEKFLKLLELLGE---RYEDGKTIIFVDKQEKADALLRDLQKA---------GYNCDSLHGGVDQHDRSSTIED 658 (997)
T ss_pred EEecCchHHHHHHHHHHHH---HhhcCCEEEEEcCchHHHHHHHHHHhc---------CcchhhhcCCCchHHHHhHHHH
Confidence 6666 44444444333322 223799999999999999999999873 4778889999999999999999
Q ss_pred CCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEeccCc
Q 048746 393 TPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTLH 471 (755)
Q Consensus 393 f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~~ 471 (755)
|++|..++||||+++++|+|++++.+||||++ |...++|+||+|||||+|+ |.||.|.++.
T Consensus 659 fK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~------------------pnh~edyvhR~gRTgragrkg~AvtFi~p~ 720 (997)
T KOG0334|consen 659 FKNGVVNLLVATSVVARGLDVKELILVVNYDF------------------PNHYEDYVHRVGRTGRAGRKGAAVTFITPD 720 (997)
T ss_pred HhccCceEEEehhhhhcccccccceEEEEccc------------------chhHHHHHHHhcccccCCccceeEEEeChH
Confidence 99999999999999999999999999999999 9999999999999999996 9999999984
No 52
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.1e-38 Score=364.16 Aligned_cols=308 Identities=21% Similarity=0.281 Sum_probs=227.1
Q ss_pred HhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCcc
Q 048746 126 ERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKL 203 (755)
Q Consensus 126 ~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~ 203 (755)
+++..| +++|.++++++.+++++++++||||||| +++|.++. .+.++|++|+++|+.|+...+.. .|...
T Consensus 21 fG~~~~-r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv~~l~~-~gi~~ 92 (607)
T PRK11057 21 FGYQQF-RPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQVDQLLA-NGVAA 92 (607)
T ss_pred cCCCCC-CHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHHHHHHH-cCCcE
Confidence 356555 8999999999999999999999999999 67776643 35789999999999999988876 55544
Q ss_pred ccEEeeeee------ccccCCCCceEEEeCcHHHHHH-HhCCCCCCCCCceEeecccccCCc-cchHHH--HHHHHHhcC
Q 048746 204 GHEVGYSIR------FEDCTSEKTILKYMTDGMLLRE-ILSEPNLESYSVLMVDEAHERTLS-TDILFG--LLKDLIKFR 273 (755)
Q Consensus 204 g~~vg~~~~------~~~~~~~~~~I~v~T~g~Ll~~-l~~~~~l~~~~~vIiDEaHer~~~-~d~~~~--~l~~~~~~~ 273 (755)
....+.... +........+++|+||+.|... +.......++++|||||||..+-+ .+|... .+..+....
T Consensus 93 ~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~ 172 (607)
T PRK11057 93 ACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRF 172 (607)
T ss_pred EEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhC
Confidence 322221111 1112334578999999988742 222223457899999999943322 233322 344455566
Q ss_pred CCcEEEEeccCCCHH---HHHhhhC-CCCEEEecCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q 048746 274 SDLKLLISSATLDAE---KFSDYFG-SAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQE 349 (755)
Q Consensus 274 ~~~~~il~SAT~~~~---~l~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~ 349 (755)
++.+++++|||++.. .+.+.++ ..|.+.+.....| .+.|.......... .++.......++++||||++++
T Consensus 173 p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~-nl~~~v~~~~~~~~----~l~~~l~~~~~~~~IIFc~tr~ 247 (607)
T PRK11057 173 PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYTLVEKFKPLD----QLMRYVQEQRGKSGIIYCNSRA 247 (607)
T ss_pred CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCC-cceeeeeeccchHH----HHHHHHHhcCCCCEEEEECcHH
Confidence 889999999999544 3344433 3444444332222 22333222222222 2333333455789999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCccccc
Q 048746 350 EIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKS 429 (755)
Q Consensus 350 ~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~ 429 (755)
+++.++..|... ++.+..+||+|++++|..+++.|+.|..+|||||+++++|||+|+|++||++|+
T Consensus 248 ~~e~la~~L~~~---------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~----- 313 (607)
T PRK11057 248 KVEDTAARLQSR---------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI----- 313 (607)
T ss_pred HHHHHHHHHHhC---------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCC-----
Confidence 999999999874 377899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 430 YNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 430 ~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
|.|.++|+||+|||||.| +|.|+.||+..+.
T Consensus 314 -------------P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~ 345 (607)
T PRK11057 314 -------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (607)
T ss_pred -------------CCCHHHHHHHhhhccCCCCCceEEEEeCHHHH
Confidence 999999999999999999 5999999998764
No 53
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-37 Score=322.00 Aligned_cols=321 Identities=21% Similarity=0.297 Sum_probs=231.2
Q ss_pred HHHHhcCCCChHHHHHHHHHHH---------cCCeEEEEccCCCchh--ccHHHHHHHhccc-CCCccccCccHHHHHHH
Q 048746 123 LQEERKTLPIYPYRDELLQAVN---------EYQVLVIVGETGSGKT--TQIPQYLHEAGYT-KQGKVGCTQPRRVAAMS 190 (755)
Q Consensus 123 l~~~~~~lPl~~~Q~~~l~~i~---------~~~~vii~apTGsGKT--~~ip~~l~~~~~~-~~~~ilv~~P~r~la~q 190 (755)
+.++ +..-++|+|.++++.+. ..+|+.|.|||||||| |.||..-...... +.-+++|++|+|+|+.|
T Consensus 152 l~k~-~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~Q 230 (620)
T KOG0350|consen 152 LVKM-AISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQ 230 (620)
T ss_pred HHHh-hcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHH
Confidence 4444 45556899999999873 2579999999999999 8888665443221 22489999999999999
Q ss_pred HHHHHHHHhCCccccEEeeeeecccc-------CC----CCceEEEeCcHHHHHHHhCCC--CCCCCCceEeecccccCC
Q 048746 191 VAARVSQEMGVKLGHEVGYSIRFEDC-------TS----EKTILKYMTDGMLLREILSEP--NLESYSVLMVDEAHERTL 257 (755)
Q Consensus 191 ~a~~~~~~~~~~~g~~vg~~~~~~~~-------~~----~~~~I~v~T~g~Ll~~l~~~~--~l~~~~~vIiDEaHer~~ 257 (755)
++..+.+ +....|..|+....-.+. .+ ...+|+|+|||+|.+++.+.+ .|++++++|||||| |++
T Consensus 231 V~~~f~~-~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll 308 (620)
T KOG0350|consen 231 VYDTFKR-LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RLL 308 (620)
T ss_pred HHHHHHH-hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-HHH
Confidence 9988877 444455555522221111 11 145899999999999998654 78999999999999 877
Q ss_pred ccchHHHH---HH------------HHHh-------------------cCCCcEEEEeccCC--CHHHHHhhhCCCC-EE
Q 048746 258 STDILFGL---LK------------DLIK-------------------FRSDLKLLISSATL--DAEKFSDYFGSAP-IF 300 (755)
Q Consensus 258 ~~d~~~~~---l~------------~~~~-------------------~~~~~~~il~SAT~--~~~~l~~~~~~~~-~~ 300 (755)
+..|...+ .. .++. ..+.+..+++|||+ ++..+.++-...| .+
T Consensus 309 ~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~ 388 (620)
T KOG0350|consen 309 DQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLF 388 (620)
T ss_pred HHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceE
Confidence 65432211 11 1111 11334578899999 7888888766555 44
Q ss_pred EecCc---cc--c--ceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceE
Q 048746 301 KIPGR---RY--P--VEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELI 373 (755)
Q Consensus 301 ~~~~~---~~--~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 373 (755)
.+.+. .| | +...+...... ... ..+..+.......++|+|+++.+.+.+++..|.-.... .+..
T Consensus 389 ~v~~~~~~ryslp~~l~~~~vv~~~~-~kp---l~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~-----~~~~ 459 (620)
T KOG0350|consen 389 HVSKPLIGRYSLPSSLSHRLVVTEPK-FKP---LAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS-----DNFK 459 (620)
T ss_pred EeecccceeeecChhhhhceeecccc-cch---HhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc-----ccch
Confidence 44421 11 1 11111111111 111 12233333444678999999999999999999833221 2355
Q ss_pred EEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhh
Q 048746 374 ICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRA 453 (755)
Q Consensus 374 v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~ 453 (755)
+-.+.|+++...|.+.++.|..|.++||||||+++||+|+.+|+.||||++ |.+..+|+||+
T Consensus 460 ~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~------------------P~~~ktyVHR~ 521 (620)
T KOG0350|consen 460 VSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDP------------------PASDKTYVHRA 521 (620)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCC------------------CchhhHHHHhh
Confidence 666899999999999999999999999999999999999999999999999 99999999999
Q ss_pred cccCCCCC-CEEEEeccCccc
Q 048746 454 GRSGRTGP-GKCFRLYTLHNY 473 (755)
Q Consensus 454 GRaGR~g~-G~~~~l~~~~~~ 473 (755)
||+||+|. |.||.|.+.++.
T Consensus 522 GRTARAgq~G~a~tll~~~~~ 542 (620)
T KOG0350|consen 522 GRTARAGQDGYAITLLDKHEK 542 (620)
T ss_pred cccccccCCceEEEeeccccc
Confidence 99999995 999999998754
No 54
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-37 Score=331.32 Aligned_cols=346 Identities=21% Similarity=0.219 Sum_probs=266.9
Q ss_pred ccCCCCcccccccCCC----CccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHh
Q 048746 97 VIDGENLDELHSELPD----KSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEA 170 (755)
Q Consensus 97 ~~~g~~~~~~~~~f~~----~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~ 170 (755)
.+.|.+.+.++.+|.+ ...+..+++++...++.-| +++|.++++.+..+++++.||||||||| +.+|.+....
T Consensus 121 ~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~P-t~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~ 199 (593)
T KOG0344|consen 121 NVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEP-TPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLK 199 (593)
T ss_pred eccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCC-CcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHH
Confidence 4678888999999987 4567888999999999999 9999999999999999999999999999 7888665443
Q ss_pred ccc----C-CCccccCccHHHHHHHHHHHHHHHhC-Ccc-ccEEe--eee----eccccCCCCceEEEeCcHHHHHHHhC
Q 048746 171 GYT----K-QGKVGCTQPRRVAAMSVAARVSQEMG-VKL-GHEVG--YSI----RFEDCTSEKTILKYMTDGMLLREILS 237 (755)
Q Consensus 171 ~~~----~-~~~ilv~~P~r~la~q~a~~~~~~~~-~~~-g~~vg--~~~----~~~~~~~~~~~I~v~T~g~Ll~~l~~ 237 (755)
... + +-+++|+.|+|+||.|+++.+.+..- ... ....+ |.. ..........+|++.||-++...+..
T Consensus 200 ~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~ 279 (593)
T KOG0344|consen 200 DLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGL 279 (593)
T ss_pred HhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcC
Confidence 332 1 23899999999999999988877430 111 11111 110 01111224678999999999999877
Q ss_pred CC---CCCCCCceEeecccccCCcc-chHHHHHHHHHh-cCCCcEEEEeccCC--CHHHHHhhhCCCCEEEecCcc----
Q 048746 238 EP---NLESYSVLMVDEAHERTLST-DILFGLLKDLIK-FRSDLKLLISSATL--DAEKFSDYFGSAPIFKIPGRR---- 306 (755)
Q Consensus 238 ~~---~l~~~~~vIiDEaHer~~~~-d~~~~~l~~~~~-~~~~~~~il~SAT~--~~~~l~~~~~~~~~~~~~~~~---- 306 (755)
.+ .++.+.++|+||+| +.+.. .|..++..++.. ..+++++-+||||+ .++.+++.....++..+.|..
T Consensus 280 ~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~ 358 (593)
T KOG0344|consen 280 GKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSAN 358 (593)
T ss_pred CCccchhheeeeEeechHH-hhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHh
Confidence 65 78999999999999 66665 455555444444 44788999999999 566777776666655555542
Q ss_pred ccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHH
Q 048746 307 YPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQ 386 (755)
Q Consensus 307 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 386 (755)
..|++....+... ...+..+.++....-..++|||+.+.+.+..|...|.. . .++.+..+||..++.+|
T Consensus 359 ~~V~QelvF~gse---~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~-~-------~~i~v~vIh~e~~~~qr 427 (593)
T KOG0344|consen 359 ETVDQELVFCGSE---KGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI-Y-------DNINVDVIHGERSQKQR 427 (593)
T ss_pred hhhhhhheeeecc---hhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhh-c-------cCcceeeEecccchhHH
Confidence 2233333322222 12233444444455578999999999999999999852 1 46889999999999999
Q ss_pred HHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEE
Q 048746 387 AKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCF 465 (755)
Q Consensus 387 ~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~ 465 (755)
..+++.|+.|+++||+||++++||+|+.+|+.|||||+ |.+..+|+||+||+||.|+ |.+|
T Consensus 428 de~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~------------------p~s~~syihrIGRtgRag~~g~Ai 489 (593)
T KOG0344|consen 428 DETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDF------------------PQSDLSYIHRIGRTGRAGRSGKAI 489 (593)
T ss_pred HHHHHHHhccCeeEEEehhhhhccccccCcceEEecCC------------------CchhHHHHHHhhccCCCCCCcceE
Confidence 99999999999999999999999999999999999999 9999999999999999995 9999
Q ss_pred EeccCccc
Q 048746 466 RLYTLHNY 473 (755)
Q Consensus 466 ~l~~~~~~ 473 (755)
.||+..+.
T Consensus 490 tfytd~d~ 497 (593)
T KOG0344|consen 490 TFYTDQDM 497 (593)
T ss_pred EEeccccc
Confidence 99998554
No 55
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.8e-36 Score=361.28 Aligned_cols=325 Identities=20% Similarity=0.185 Sum_probs=224.0
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHH--Hhc----ccCCCccccCccHHHHHH
Q 048746 118 SALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLH--EAG----YTKQGKVGCTQPRRVAAM 189 (755)
Q Consensus 118 ~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~--~~~----~~~~~~ilv~~P~r~la~ 189 (755)
..+.+..+.++..| +++|.++++.+.++++++++|||||||| +++|.+-. ... ..++.+++|++|+|+|+.
T Consensus 20 ~~v~~~~~~~~~~~-tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~ 98 (876)
T PRK13767 20 PYVREWFKEKFGTF-TPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNN 98 (876)
T ss_pred HHHHHHHHHccCCC-CHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHH
Confidence 44444555577777 9999999999999999999999999999 44554321 111 122347999999999999
Q ss_pred HHHHHHHH----------HhCCcc-ccEEeeeeeccc------cCCCCceEEEeCcHHHHHHHhCCC---CCCCCCceEe
Q 048746 190 SVAARVSQ----------EMGVKL-GHEVGYSIRFED------CTSEKTILKYMTDGMLLREILSEP---NLESYSVLMV 249 (755)
Q Consensus 190 q~a~~~~~----------~~~~~~-g~~vg~~~~~~~------~~~~~~~I~v~T~g~Ll~~l~~~~---~l~~~~~vIi 249 (755)
|+++++.+ .+|..+ +..++...+... ......+|+++||++|...+.+.. .+.++++|||
T Consensus 99 di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 99 DIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIV 178 (876)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEE
Confidence 99886542 123333 222331111111 112357899999999976664432 4789999999
Q ss_pred ecccccCCccc---hHHHHHHHHHhcC-CCcEEEEeccCC-CHHHHHhhhCCC-------CEEEecCc-cccceEEEecC
Q 048746 250 DEAHERTLSTD---ILFGLLKDLIKFR-SDLKLLISSATL-DAEKFSDYFGSA-------PIFKIPGR-RYPVEIHYTKA 316 (755)
Q Consensus 250 DEaHer~~~~d---~~~~~l~~~~~~~-~~~~~il~SAT~-~~~~l~~~~~~~-------~~~~~~~~-~~~v~~~~~~~ 316 (755)
||+| ...+.. .+...+.++.... ++.|+|++|||+ +.+.+++|+.+. ++..+... ..+..+.....
T Consensus 179 DE~H-~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p 257 (876)
T PRK13767 179 DEIH-SLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISP 257 (876)
T ss_pred echh-hhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEecc
Confidence 9999 344332 2333444444433 678999999999 678888887642 22222221 11122221110
Q ss_pred -------CccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHH
Q 048746 317 -------PEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKI 389 (755)
Q Consensus 317 -------~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i 389 (755)
............+..+.. ..+++||||||++.++.++..|.+..... .....+..+||+|++++|..+
T Consensus 258 ~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~---~~~~~i~~hHg~ls~~~R~~v 332 (876)
T PRK13767 258 VDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEE---YDEDNIGAHHSSLSREVRLEV 332 (876)
T ss_pred CccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhh---ccccceeeeeCCCCHHHHHHH
Confidence 111111222223333222 35789999999999999999998754210 123568889999999999999
Q ss_pred hCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC----CCEEE
Q 048746 390 FEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG----PGKCF 465 (755)
Q Consensus 390 ~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g----~G~~~ 465 (755)
++.|++|..+|||||+++++|||+|+|++||++|. |.+.++|+||+|||||.+ .|.++
T Consensus 333 e~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~------------------P~sv~~ylQRiGRaGR~~g~~~~g~ii 394 (876)
T PRK13767 333 EEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGS------------------PKSVSRLLQRIGRAGHRLGEVSKGRII 394 (876)
T ss_pred HHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCC------------------CCCHHHHHHhcccCCCCCCCCCcEEEE
Confidence 99999999999999999999999999999999999 999999999999999874 36666
Q ss_pred Ee
Q 048746 466 RL 467 (755)
Q Consensus 466 ~l 467 (755)
.+
T Consensus 395 ~~ 396 (876)
T PRK13767 395 VV 396 (876)
T ss_pred Ec
Confidence 54
No 56
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-37 Score=313.42 Aligned_cols=336 Identities=16% Similarity=0.251 Sum_probs=268.5
Q ss_pred CcccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccc
Q 048746 102 NLDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVG 179 (755)
Q Consensus 102 ~~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~il 179 (755)
+..+.+.+|+++++.+++|+.|...|++.| +.+|+.+|..+-+|.++++.+++|+||| +.++.+..-..-.+...++
T Consensus 20 n~~evvdsfddm~L~e~LLrgiy~yGFekP-SaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qal 98 (397)
T KOG0327|consen 20 NWNEVVDSFDDMNLKESLLRGIYAYGFEKP-SAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQAL 98 (397)
T ss_pred cHHHHhhhhhhcCCCHHHHhHHHhhccCCc-hHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHH
Confidence 344566799999999999999999999999 9999999999999999999999999999 3333322212122335899
Q ss_pred cCccHHHHHHHHHHHHHHHhCCcc----ccEEeeeeec-cc--cCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeec
Q 048746 180 CTQPRRVAAMSVAARVSQEMGVKL----GHEVGYSIRF-ED--CTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDE 251 (755)
Q Consensus 180 v~~P~r~la~q~a~~~~~~~~~~~----g~~vg~~~~~-~~--~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDE 251 (755)
+++|+|+||.|+.+.+.. +|... ...+|..... +. ......+|+++|||+++..+.... ....+.++|+||
T Consensus 99 ilaPtreLa~qi~~v~~~-lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDE 177 (397)
T KOG0327|consen 99 ILAPTRELAQQIQKVVRA-LGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDE 177 (397)
T ss_pred HhcchHHHHHHHHHHHHh-hhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecc
Confidence 999999999999954443 44333 3344433222 21 223457999999999999986654 455689999999
Q ss_pred ccccCCccchHHHHHHHHHhcCCCcEEEEeccCCC--HHHHHhhhCCCCEEEecCc----cccceEEEecCCccchHHHH
Q 048746 252 AHERTLSTDILFGLLKDLIKFRSDLKLLISSATLD--AEKFSDYFGSAPIFKIPGR----RYPVEIHYTKAPEADYIDAA 325 (755)
Q Consensus 252 aHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~--~~~l~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~ 325 (755)
|+| ++..+|...+...+...+++.|++++|||++ ...+.+-|...|+.....+ ..-+.++|....... .
T Consensus 178 aDE-mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~----k 252 (397)
T KOG0327|consen 178 ADE-MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE----K 252 (397)
T ss_pred hHh-hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc----c
Confidence 994 7788898888888888999999999999995 4567777887777554433 123455555544443 3
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCC
Q 048746 326 IVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATN 405 (755)
Q Consensus 326 ~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~ 405 (755)
+..+..++. ...+.+|||||++.+..+...|... ++.+..+||.|.+.+|..+.+.|+.|..+|||+|+
T Consensus 253 ~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~---------~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttd 321 (397)
T KOG0327|consen 253 LDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH---------GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTD 321 (397)
T ss_pred ccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC---------CceEEEeecccchhhhhHHHHHhhcCCceEEeecc
Confidence 445556555 4678899999999999999999653 47889999999999999999999999999999999
Q ss_pred cccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 406 IAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 406 i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
.+++|+|+..+..||||++ |..+++|+||+||+||.| +|.++.++++++.
T Consensus 322 l~argidv~~~slvinydl------------------P~~~~~yihR~gr~gr~grkg~~in~v~~~d~ 372 (397)
T KOG0327|consen 322 LLARGIDVQQVSLVVNYDL------------------PARKENYIHRIGRAGRFGRKGVAINFVTEEDV 372 (397)
T ss_pred ccccccchhhcceeeeecc------------------ccchhhhhhhcccccccCCCceeeeeehHhhH
Confidence 9999999999999999999 999999999999999999 6999999998765
No 57
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=7.7e-37 Score=353.65 Aligned_cols=307 Identities=20% Similarity=0.210 Sum_probs=224.2
Q ss_pred HhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCcc
Q 048746 126 ERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKL 203 (755)
Q Consensus 126 ~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~ 203 (755)
+++..+ +++|.++++++.+|+++++++|||+||| +++|.++. ++.++|++|+++|+.|+...+.. +|..+
T Consensus 9 fg~~~f-r~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~-~gi~~ 80 (591)
T TIGR01389 9 FGYDDF-RPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRA-AGVAA 80 (591)
T ss_pred cCCCCC-CHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHH-cCCcE
Confidence 455555 9999999999999999999999999999 67776542 45789999999999999988876 56554
Q ss_pred ccEEeeeeecc-------ccCCCCceEEEeCcHHHHHHH-hCCCCCCCCCceEeecccccCCc-cchHHHH--HHHHHhc
Q 048746 204 GHEVGYSIRFE-------DCTSEKTILKYMTDGMLLREI-LSEPNLESYSVLMVDEAHERTLS-TDILFGL--LKDLIKF 272 (755)
Q Consensus 204 g~~vg~~~~~~-------~~~~~~~~I~v~T~g~Ll~~l-~~~~~l~~~~~vIiDEaHer~~~-~d~~~~~--l~~~~~~ 272 (755)
....+ ..... .......+|+|+||++|.... .......++++|||||||..+.+ .+|...+ +..+...
T Consensus 81 ~~~~s-~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~ 159 (591)
T TIGR01389 81 AYLNS-TLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAER 159 (591)
T ss_pred EEEeC-CCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHh
Confidence 32222 11111 112346789999999986422 22224568999999999954322 3343333 3334445
Q ss_pred CCCcEEEEeccCCCHH---HHHhhhCC-CCEEEecCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q 048746 273 RSDLKLLISSATLDAE---KFSDYFGS-APIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQ 348 (755)
Q Consensus 273 ~~~~~~il~SAT~~~~---~l~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~ 348 (755)
.++.+++++|||++.. .+.++++. .+...+.+. ....+.|...+..+... .+........++++||||+++
T Consensus 160 ~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~-~r~nl~~~v~~~~~~~~----~l~~~l~~~~~~~~IIf~~sr 234 (591)
T TIGR01389 160 FPQVPRIALTATADAETRQDIRELLRLADANEFITSF-DRPNLRFSVVKKNNKQK----FLLDYLKKHRGQSGIIYASSR 234 (591)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCC-CCCCcEEEEEeCCCHHH----HHHHHHHhcCCCCEEEEECcH
Confidence 5667799999999554 45555542 222222221 11233333222222222 223333333467899999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccc
Q 048746 349 EEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVK 428 (755)
Q Consensus 349 ~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~ 428 (755)
++++.+++.|... ++.+..+||+|+.++|..+++.|.+|..+|||||+++++|||+|+|++||++++
T Consensus 235 ~~~e~la~~L~~~---------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~---- 301 (591)
T TIGR01389 235 KKVEELAERLESQ---------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDM---- 301 (591)
T ss_pred HHHHHHHHHHHhC---------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCC----
Confidence 9999999999874 367889999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 429 SYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 429 ~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
|.|.++|.||+|||||.| +|.|+.+|+..+.
T Consensus 302 --------------p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~ 333 (591)
T TIGR01389 302 --------------PGNLESYYQEAGRAGRDGLPAEAILLYSPADI 333 (591)
T ss_pred --------------CCCHHHHhhhhccccCCCCCceEEEecCHHHH
Confidence 999999999999999999 6999999987764
No 58
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=7.6e-37 Score=325.04 Aligned_cols=345 Identities=14% Similarity=0.172 Sum_probs=272.9
Q ss_pred CCCcccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhc--ccCCCc
Q 048746 100 GENLDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAG--YTKQGK 177 (755)
Q Consensus 100 g~~~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~--~~~~~~ 177 (755)
++-.+.....|+++.+...++..|...++.+| +++|..+||++..+-++||.|..|+|||.+...+..+.. ......
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~p-tkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q 95 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALP-TKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQ 95 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCC-CchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcce
Confidence 33445556678888999999999999999999 999999999999999999999999999944333333321 122358
Q ss_pred cccCccHHHHHHHHHHHHHHHh----CCccccEEeeee-eccccCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeec
Q 048746 178 VGCTQPRRVAAMSVAARVSQEM----GVKLGHEVGYSI-RFEDCTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDE 251 (755)
Q Consensus 178 ilv~~P~r~la~q~a~~~~~~~----~~~~g~~vg~~~-~~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDE 251 (755)
++|++|||++|.|+...+.+.. |.++...+|..- ..+...-..++|+|+|||++..+...+. +.+.++++|+||
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDE 175 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDE 175 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEecc
Confidence 8999999999999998887643 444444555322 1222333578999999999999986665 789999999999
Q ss_pred ccccCCccchHHH-HHHHHHhcCCCcEEEEeccCCC---HHHHHhhhCCCCEEEecCc---cccceEEEecCCccc----
Q 048746 252 AHERTLSTDILFG-LLKDLIKFRSDLKLLISSATLD---AEKFSDYFGSAPIFKIPGR---RYPVEIHYTKAPEAD---- 320 (755)
Q Consensus 252 aHer~~~~d~~~~-~l~~~~~~~~~~~~il~SAT~~---~~~l~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~---- 320 (755)
|| ..+++..+.. +-.++..++...|++.+|||.+ .+.+++|+..+-.+....+ .+.+.+++...+..+
T Consensus 176 AD-kL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsve 254 (980)
T KOG4284|consen 176 AD-KLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVE 254 (980)
T ss_pred HH-hhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHH
Confidence 99 6777665544 4445555778899999999994 3477888876666665544 455677766555432
Q ss_pred hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEE
Q 048746 321 YIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKV 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~v 400 (755)
-....+..+-++...-+-.+.||||+....++.++..|... ++.+..+.|.|++.+|..+++..+.-..+|
T Consensus 255 emrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss---------G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rI 325 (980)
T KOG4284|consen 255 EMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS---------GLDVTFISGAMSQKDRLLAVDQLRAFRVRI 325 (980)
T ss_pred HHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc---------CCCeEEeccccchhHHHHHHHHhhhceEEE
Confidence 23334555566666666678999999999999999999874 488999999999999999999999999999
Q ss_pred EEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEeccCccc
Q 048746 401 VLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTLHNY 473 (755)
Q Consensus 401 lvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~~~~ 473 (755)
||+||+.+||||-|+|.+|||.|. |.+-.+|.||+|||||.|. |.+++++..+..
T Consensus 326 LVsTDLtaRGIDa~~vNLVVNiD~------------------p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 326 LVSTDLTARGIDADNVNLVVNIDA------------------PADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred EEecchhhccCCccccceEEecCC------------------CcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999 9999999999999999996 999999876543
No 59
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=9.7e-36 Score=332.83 Aligned_cols=473 Identities=19% Similarity=0.220 Sum_probs=320.0
Q ss_pred ChHHHHHHHHH-HHcCCeEEEEccCCCchhccHHHHHHHhcc---------cCCCccccCccHHHHHHHHHHHHHHHh--
Q 048746 132 IYPYRDELLQA-VNEYQVLVIVGETGSGKTTQIPQYLHEAGY---------TKQGKVGCTQPRRVAAMSVAARVSQEM-- 199 (755)
Q Consensus 132 l~~~Q~~~l~~-i~~~~~vii~apTGsGKT~~ip~~l~~~~~---------~~~~~ilv~~P~r~la~q~a~~~~~~~-- 199 (755)
++.+|.++++. ...+.+.|||||||||||-++.+.++.... ...-+|++++|+++||.++++.+.+.+
T Consensus 111 fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~ 190 (1230)
T KOG0952|consen 111 FNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAP 190 (1230)
T ss_pred HHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhccc
Confidence 67899999998 466899999999999999544444333211 123399999999999999999998876
Q ss_pred -CCccccEEeeeeeccccCCCCceEEEeCcHHH---HHHHhCCC-CCCCCCceEeecccccCCccc---hHHHHHHHHH-
Q 048746 200 -GVKLGHEVGYSIRFEDCTSEKTILKYMTDGML---LREILSEP-NLESYSVLMVDEAHERTLSTD---ILFGLLKDLI- 270 (755)
Q Consensus 200 -~~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~L---l~~l~~~~-~l~~~~~vIiDEaHer~~~~d---~~~~~l~~~~- 270 (755)
|..++...|- .......-..++|+|+||+.. .|.-..+. .++.+.+|||||+| +++.+ .+..++.+.+
T Consensus 191 ~gi~v~ELTGD-~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVH--lLhd~RGpvlEtiVaRtlr 267 (1230)
T KOG0952|consen 191 LGISVRELTGD-TQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVH--LLHDDRGPVLETIVARTLR 267 (1230)
T ss_pred ccceEEEecCc-chhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeeh--hhcCcccchHHHHHHHHHH
Confidence 4555555551 111111235799999999754 33322222 57789999999999 33333 3333333333
Q ss_pred ---hcCCCcEEEEeccCC-CHHHHHhhhCCC---CEEEecCc--cccceEEEecCCccc--h----HH-HHHHHHHHHHh
Q 048746 271 ---KFRSDLKLLISSATL-DAEKFSDYFGSA---PIFKIPGR--RYPVEIHYTKAPEAD--Y----ID-AAIVTVLQIHV 334 (755)
Q Consensus 271 ---~~~~~~~~il~SAT~-~~~~l~~~~~~~---~~~~~~~~--~~~v~~~~~~~~~~~--~----~~-~~~~~~~~~~~ 334 (755)
.....+|+|++|||+ |.++++.|+.-. .++...++ +.|+++.+...+..+ . .+ .....+.+.+
T Consensus 268 ~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~- 346 (1230)
T KOG0952|consen 268 LVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL- 346 (1230)
T ss_pred HHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH-
Confidence 345679999999999 889999999864 34555554 556666665544331 1 11 1222333333
Q ss_pred hCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCC-----C--c-------eEEEeccCCCCHHHHHHHhCCCCCCCcEE
Q 048746 335 TQSPGDILVFLTGQEEIETADEILKHRTRGLGSKI-----A--E-------LIICPIYANLPTELQAKIFEPTPEGARKV 400 (755)
Q Consensus 335 ~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~-----~--~-------~~v~~lh~~l~~~~r~~i~~~f~~g~~~v 400 (755)
..+.+++|||+++++....++.|.+.....+... + + .....+|+||...+|..+.+.|..|.++|
T Consensus 347 -~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~v 425 (1230)
T KOG0952|consen 347 -QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKV 425 (1230)
T ss_pred -HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceE
Confidence 2467999999999999999999988764332210 0 1 23556899999999999999999999999
Q ss_pred EEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC---CCEEEEeccCcc-----
Q 048746 401 VLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG---PGKCFRLYTLHN----- 472 (755)
Q Consensus 401 lvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g---~G~~~~l~~~~~----- 472 (755)
++||.++++|+|+|+-.++| ..++.||++.|.-. -.+..+.+|..|||||.+ .|..+.+-+.+.
T Consensus 426 L~cTaTLAwGVNLPA~aViI----KGT~~ydsskg~f~----dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 426 LCCTATLAWGVNLPAYAVII----KGTQVYDSSKGSFV----DLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred EEecceeeeccCCcceEEEe----cCCcccccccCcee----eehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 99999999999999888888 88999999988655 678899999999999998 477776665432
Q ss_pred ------------ccccCCCCCccchhccCchHHHHHHHHcCCC--------CCC----cCCCC-CCC-----cHHHHHHH
Q 048746 473 ------------YHKDMDDNTVPEIQRTNLANVVLILKSLGID--------DLV----NFDFI-DPP-----PEEALLKA 522 (755)
Q Consensus 473 ------------~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~--------~~~----~~~~~-~~p-----~~~~i~~a 522 (755)
+...+.++-..||--..++++--.+..++.. +.. ....+ .-| -.+.+..+
T Consensus 498 sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~ 577 (1230)
T KOG0952|consen 498 SLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVA 577 (1230)
T ss_pred HHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHH
Confidence 1122334444555544444443333333211 000 01111 122 22345667
Q ss_pred HHHHHHccCc--cCCC---CCCHHHHHhhcCCCChhhHHHHHhccc-ccchHHHHhhhcccccccccccCCcchHHHHHH
Q 048746 523 LELLFALSAL--NKLG---ELTKVGRRMAEFPLDPMLSKMIVASDK-DKCSDEIITIAAMLSVGNSIFYRPKDKQVHADN 596 (755)
Q Consensus 523 ~~~L~~~g~l--~~~~---~lT~lG~~~~~~pl~p~~~~~l~~~~~-~~c~~~~~~i~a~ls~~~~~f~~~~~~~~~~~~ 596 (755)
+..|.....+ |.++ ..|++||.++.+++..+..+.++.... +--.++++.++|+.++.+.+=+|-.+++...+.
T Consensus 578 ~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el 657 (1230)
T KOG0952|consen 578 AMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKEL 657 (1230)
T ss_pred HHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHH
Confidence 7777766554 4332 589999999999999999999999998 778899999999988866555554443332211
Q ss_pred -----HHhcccCCCCCcHHHHHHHHHH
Q 048746 597 -----ARMNFHLGNVGDHIALLRVYNS 618 (755)
Q Consensus 597 -----~~~~f~~~~~~D~~~~l~~~~~ 618 (755)
.+..|.. ..|+--.++.+|..
T Consensus 658 ~~~~~~~~~~~~-~~gk~nil~q~~Is 683 (1230)
T KOG0952|consen 658 NEDSCEKYPFGG-EKGKVNILLQAYIS 683 (1230)
T ss_pred Hhcccccccccc-cchhHHHHHHhhhh
Confidence 1223333 24777778877754
No 60
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=7.2e-35 Score=343.54 Aligned_cols=311 Identities=18% Similarity=0.191 Sum_probs=220.4
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHcC------CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHH
Q 048746 117 KSALEMLQEERKTLPIYPYRDELLQAVNEY------QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMS 190 (755)
Q Consensus 117 ~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q 190 (755)
......+.+.-...| ++.|.++++.+.++ .+.+++||||||||..+...++.. ...+.+++|++||++||.|
T Consensus 438 ~~~~~~~~~~~~f~~-T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~a-l~~g~qvlvLvPT~~LA~Q 515 (926)
T TIGR00580 438 LEWQQEFEDSFPFEE-TPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKA-VLDGKQVAVLVPTTLLAQQ 515 (926)
T ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHH-HHhCCeEEEEeCcHHHHHH
Confidence 344555555423335 99999999998774 689999999999994333323322 1235689999999999999
Q ss_pred HHHHHHHHhCCccccEEeeeeeccc----------cCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccc
Q 048746 191 VAARVSQEMGVKLGHEVGYSIRFED----------CTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTD 260 (755)
Q Consensus 191 ~a~~~~~~~~~~~g~~vg~~~~~~~----------~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d 260 (755)
+++.+.+.++. .+..++...++.. ......+|+|+||..+ ..+..+.++++|||||+| |.
T Consensus 516 ~~~~f~~~~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~~v~f~~L~llVIDEah-rf---- 585 (926)
T TIGR00580 516 HFETFKERFAN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QKDVKFKDLGLLIIDEEQ-RF---- 585 (926)
T ss_pred HHHHHHHHhcc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hCCCCcccCCEEEeeccc-cc----
Confidence 99999886542 2222222111111 1223578999999533 344578999999999999 42
Q ss_pred hHHHHHHHHHhcCCCcEEEEeccCCCHHHHHhhh-CC-CC-EEEe-cCccccceEEEecCCccchHHHHHHHHHHHHhhC
Q 048746 261 ILFGLLKDLIKFRSDLKLLISSATLDAEKFSDYF-GS-AP-IFKI-PGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQ 336 (755)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~il~SAT~~~~~l~~~~-~~-~~-~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (755)
.......+....++.++++||||+.+..+...+ +. .+ ++.. +....|+..++..... ..+ ...+.... .
T Consensus 586 -gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~~i---~~~i~~el--~ 658 (926)
T TIGR00580 586 -GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDP-ELV---REAIRREL--L 658 (926)
T ss_pred -chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCH-HHH---HHHHHHHH--H
Confidence 122234444566789999999999666544332 21 12 2222 2223466666553321 111 11222211 2
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCe
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGI 416 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v 416 (755)
.+++++||||+.++++.+++.|++.. +++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|++
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~-------p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v 731 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELV-------PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNA 731 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhC-------CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccC
Confidence 36899999999999999999998754 35789999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCcccccccCCCCcccccccc-cCHHhHHhhhcccCCCC-CCEEEEeccCc
Q 048746 417 KYVIDPGFSKVKSYNPRTGMESLLVHP-ISKASAMQRAGRSGRTG-PGKCFRLYTLH 471 (755)
Q Consensus 417 ~~VId~g~~k~~~~~~~~~~~~l~~~p-~s~~~~~QR~GRaGR~g-~G~~~~l~~~~ 471 (755)
++||.++. + .+.++|.||+||+||.| .|.||.++++.
T Consensus 732 ~~VIi~~a------------------~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 732 NTIIIERA------------------DKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CEEEEecC------------------CCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 99998766 3 35678999999999999 59999999764
No 61
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=7.1e-35 Score=333.73 Aligned_cols=342 Identities=17% Similarity=0.165 Sum_probs=215.6
Q ss_pred hcCCCChHHHHHHHHHHHcCC-eEEEEccCCCchhccHHHHHHHhcc-cCCC-ccccCccHHHHHHHHHHHHHHHhCCcc
Q 048746 127 RKTLPIYPYRDELLQAVNEYQ-VLVIVGETGSGKTTQIPQYLHEAGY-TKQG-KVGCTQPRRVAAMSVAARVSQEMGVKL 203 (755)
Q Consensus 127 ~~~lPl~~~Q~~~l~~i~~~~-~vii~apTGsGKT~~ip~~l~~~~~-~~~~-~ilv~~P~r~la~q~a~~~~~~~~~~~ 203 (755)
++. | +++|.++++.+..|+ ++++.+|||||||..+..+++.... .... ++++++|||+||.|+++.+.+.. ...
T Consensus 13 G~~-P-tpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~-k~l 89 (844)
T TIGR02621 13 GYS-P-FPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIG-ERL 89 (844)
T ss_pred CCC-C-CHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHH-HHh
Confidence 555 7 999999999999998 6788899999999543333332211 1122 56668899999999988776632 111
Q ss_pred -----------------------ccEEeeeeeccc------cCCCCceEEEeCcHHHHHHHhCC-------------CCC
Q 048746 204 -----------------------GHEVGYSIRFED------CTSEKTILKYMTDGMLLREILSE-------------PNL 241 (755)
Q Consensus 204 -----------------------g~~vg~~~~~~~------~~~~~~~I~v~T~g~Ll~~l~~~-------------~~l 241 (755)
...+....++.. ....++.|+|+|++++.+..... ..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L 169 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFL 169 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhh
Confidence 111221111111 12246789999976665433210 026
Q ss_pred CCCCceEeecccccCCccchHHHHHHHHHhc--CC---CcEEEEeccCCCH--HHHHhhhCCCCE-EEecCcccc--ceE
Q 048746 242 ESYSVLMVDEAHERTLSTDILFGLLKDLIKF--RS---DLKLLISSATLDA--EKFSDYFGSAPI-FKIPGRRYP--VEI 311 (755)
Q Consensus 242 ~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~--~~---~~~~il~SAT~~~--~~l~~~~~~~~~-~~~~~~~~~--v~~ 311 (755)
.++++||||||| +.+.|...+..++... ++ ++|+++||||++. ..+...+...+. +.+...... -..
T Consensus 170 ~~v~~LVLDEAD---Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~ 246 (844)
T TIGR02621 170 GQDALIVHDEAH---LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIV 246 (844)
T ss_pred ccceEEEEehhh---hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceE
Confidence 889999999999 5566666555555432 22 2699999999953 345555543333 222221111 112
Q ss_pred EEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHH----
Q 048746 312 HYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQA---- 387 (755)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~---- 387 (755)
+|...+...+....+..+..+. ...++++||||||++.++.+++.|.+.. + ..+||+|++.+|.
T Consensus 247 q~v~v~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~g---------~--~lLHG~m~q~dR~~~~~ 314 (844)
T TIGR02621 247 KLVPPSDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKEK---------F--ELLTGTLRGAERDDLVK 314 (844)
T ss_pred EEEecChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhcC---------C--eEeeCCCCHHHHhhHHH
Confidence 2333333333333333333333 2346899999999999999999998732 2 7899999999999
Q ss_pred -HHhCCCCC----CC-------cEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcc
Q 048746 388 -KIFEPTPE----GA-------RKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGR 455 (755)
Q Consensus 388 -~i~~~f~~----g~-------~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GR 455 (755)
.+++.|++ |. .+|||||+++|+||||+. ++||+... | .++|+||+||
T Consensus 315 ~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~a------------------P--~esyIQRiGR 373 (844)
T TIGR02621 315 KEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLA------------------P--FESMQQRFGR 373 (844)
T ss_pred HHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCC------------------C--HHHHHHHhcc
Confidence 77888876 43 689999999999999997 77876444 5 5899999999
Q ss_pred cCCCCC--CEEEEeccCccccccC-CCCCccchhccCchHHHHHHHHcCCCCCCcC
Q 048746 456 SGRTGP--GKCFRLYTLHNYHKDM-DDNTVPEIQRTNLANVVLILKSLGIDDLVNF 508 (755)
Q Consensus 456 aGR~g~--G~~~~l~~~~~~~~~l-~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~ 508 (755)
+||.|. |..+.+++.+ +.... ...-.|+++...+..+.+.....|..+...|
T Consensus 374 tgR~G~~~~~~i~vv~~~-~~~~~~~~vY~~~~l~~t~~~L~~~~~~~~~~~~~al 428 (844)
T TIGR02621 374 VNRFGELQACQIAVVHLD-LGKDQDFDVYGKKIDKSTWSTLKKLQQLKGKNKRAAL 428 (844)
T ss_pred cCCCCCCCCceEEEEeec-cCCCcccCCCCHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 999985 3335555431 11111 1112367777666555554444443333333
No 62
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=303.48 Aligned_cols=333 Identities=20% Similarity=0.228 Sum_probs=260.7
Q ss_pred cccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccC-CCccccCcc
Q 048746 107 HSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTK-QGKVGCTQP 183 (755)
Q Consensus 107 ~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~-~~~ilv~~P 183 (755)
...|..++++..++++|.+.++..| +|+|+..+|.++++++++..|-|||||| +.+|.+.......+ +.+.+++.|
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~p-tpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsp 98 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTP-TPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSP 98 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCC-CchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccC
Confidence 3468999999999999999999999 9999999999999999999999999999 88888765544433 349999999
Q ss_pred HHHHHHHHHHHHHHHhCCcccc----EEeeeeeccc--cCCCCceEEEeCcHHHHHHHhC-CCCCCCCCceEeecccccC
Q 048746 184 RRVAAMSVAARVSQEMGVKLGH----EVGYSIRFED--CTSEKTILKYMTDGMLLREILS-EPNLESYSVLMVDEAHERT 256 (755)
Q Consensus 184 ~r~la~q~a~~~~~~~~~~~g~----~vg~~~~~~~--~~~~~~~I~v~T~g~Ll~~l~~-~~~l~~~~~vIiDEaHer~ 256 (755)
+|+||.|+.+-+++ +|.-.+. .+|+..-.+. ....+.+|+++|||+++..... +-.|+.+.|||+||++ |.
T Consensus 99 treLa~qtlkvvkd-lgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rl 176 (529)
T KOG0337|consen 99 TRELALQTLKVVKD-LGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RL 176 (529)
T ss_pred cHHHHHHHHHHHHH-hccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HH
Confidence 99999999976655 5543322 3342211111 2345789999999999876532 2368999999999999 99
Q ss_pred CccchHHHHHHHHHhcCCCcEEEEeccCCCHH--HHHhhhCCCCEE-Ee--cCc-cccceEEEecCCccchHHHHHHHHH
Q 048746 257 LSTDILFGLLKDLIKFRSDLKLLISSATLDAE--KFSDYFGSAPIF-KI--PGR-RYPVEIHYTKAPEADYIDAAIVTVL 330 (755)
Q Consensus 257 ~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~~--~l~~~~~~~~~~-~~--~~~-~~~v~~~~~~~~~~~~~~~~~~~~~ 330 (755)
+.++|...+-+.+.+.+.+.|.++||||++.. .|++-=...|+. .+ +.+ .-.++..|......+... .++
T Consensus 177 femgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~a----aLl 252 (529)
T KOG0337|consen 177 FEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEA----ALL 252 (529)
T ss_pred HhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHH----HHH
Confidence 99999999999998999899999999999644 444432223332 21 122 122344444444443333 223
Q ss_pred HHHhh-CCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccc
Q 048746 331 QIHVT-QSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAET 409 (755)
Q Consensus 331 ~~~~~-~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~ 409 (755)
.+... ..+.+++||++++..++.+...|...+ ..+..+||+|.+..|..-+..|..++..++|.|++|+|
T Consensus 253 ~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g---------~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaR 323 (529)
T KOG0337|consen 253 SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFG---------GEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAAR 323 (529)
T ss_pred HHHhccccccceeEEecccchHHHHHHHHHhcC---------CCccccccccChHhhhhccccccCCccceEEEehhhhc
Confidence 22221 124579999999999999999998854 56677999999999999999999999999999999999
Q ss_pred cCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 410 SLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 410 Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
|+|||..+-||||++ |.+..-|.||+||+.|.| .|.+|.++...+.
T Consensus 324 G~diplldnvinyd~------------------p~~~klFvhRVgr~aragrtg~aYs~V~~~~~ 370 (529)
T KOG0337|consen 324 GLDIPLLDNVINYDF------------------PPDDKLFVHRVGRVARAGRTGRAYSLVASTDD 370 (529)
T ss_pred cCCCccccccccccC------------------CCCCceEEEEecchhhccccceEEEEEecccc
Confidence 999999999999999 999999999999999999 5999999987544
No 63
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=4.6e-34 Score=325.29 Aligned_cols=379 Identities=19% Similarity=0.211 Sum_probs=260.4
Q ss_pred cchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHH--HHhc--c-cCCCccccCccHHHH
Q 048746 115 KEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYL--HEAG--Y-TKQGKVGCTQPRRVA 187 (755)
Q Consensus 115 ~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l--~~~~--~-~~~~~ilv~~P~r~l 187 (755)
+++.+.+.+.+. +..| ++.|.++++.+.+|++++++|||||||| .++|.+- +..+ . ..+-.++|+.|.|+|
T Consensus 8 l~~~v~~~~~~~-~~~~-t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 8 LDPRVREWFKRK-FTSL-TPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred cCHHHHHHHHHh-cCCC-CHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 345555555555 8888 9999999999999999999999999999 5555442 2221 1 112389999999999
Q ss_pred HHHHHHHHHH---HhCCccccEEeeeeeccc--cCCCCceEEEeCcHHHHHHHhCCC---CCCCCCceEeeccc-----c
Q 048746 188 AMSVAARVSQ---EMGVKLGHEVGYSIRFED--CTSEKTILKYMTDGMLLREILSEP---NLESYSVLMVDEAH-----E 254 (755)
Q Consensus 188 a~q~a~~~~~---~~~~~~g~~vg~~~~~~~--~~~~~~~I~v~T~g~Ll~~l~~~~---~l~~~~~vIiDEaH-----e 254 (755)
..++.+++.. ++|.++....|.....+. ....-.+|+++||+.|.-.+.+.. .|.++.+|||||+| +
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 9999988865 456666544553322222 122457999999999987775543 68999999999999 3
Q ss_pred cCCccchHHHHHHHHHhcCCCcEEEEeccCC-CHHHHHhhhCCCC----EEEecCc-cccceEEEecCCc---cchHHHH
Q 048746 255 RTLSTDILFGLLKDLIKFRSDLKLLISSATL-DAEKFSDYFGSAP----IFKIPGR-RYPVEIHYTKAPE---ADYIDAA 325 (755)
Q Consensus 255 r~~~~d~~~~~l~~~~~~~~~~~~il~SAT~-~~~~l~~~~~~~~----~~~~~~~-~~~v~~~~~~~~~---~~~~~~~ 325 (755)
|+...... +.++....++.|.|++|||. +++.+++|+.+.. ++.+.+. ...+++....... .......
T Consensus 166 RG~~Lsl~---LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~ 242 (814)
T COG1201 166 RGVQLALS---LERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAAL 242 (814)
T ss_pred cchhhhhh---HHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHH
Confidence 44333333 44444444489999999999 8999999987653 3333322 2223322221110 1122333
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCC
Q 048746 326 IVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATN 405 (755)
Q Consensus 326 ~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~ 405 (755)
+..+.++... ...+|||+||+..++.++..|.+.. ...+..+||+++.++|..+++.|++|..+++|||+
T Consensus 243 ~~~i~~~v~~--~~ttLIF~NTR~~aE~l~~~L~~~~--------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TS 312 (814)
T COG1201 243 YERIAELVKK--HRTTLIFTNTRSGAERLAFRLKKLG--------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATS 312 (814)
T ss_pred HHHHHHHHhh--cCcEEEEEeChHHHHHHHHHHHHhc--------CCceeeecccccHHHHHHHHHHHhcCCceEEEEcc
Confidence 4444444333 3489999999999999999999864 26788899999999999999999999999999999
Q ss_pred cccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC----CCEEEEeccCcccccc-----
Q 048746 406 IAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG----PGKCFRLYTLHNYHKD----- 476 (755)
Q Consensus 406 i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g----~G~~~~l~~~~~~~~~----- 476 (755)
.+|-||||.+|+.||+++- |.+.+.+.||+||+|+.- .|..|.... .+....
T Consensus 313 SLELGIDiG~vdlVIq~~S------------------P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r-~dllE~~vi~~ 373 (814)
T COG1201 313 SLELGIDIGDIDLVIQLGS------------------PKSVNRFLQRIGRAGHRLGEVSKGIIIAEDR-DDLLECLVLAD 373 (814)
T ss_pred chhhccccCCceEEEEeCC------------------cHHHHHHhHhccccccccCCcccEEEEecCH-HHHHHHHHHHH
Confidence 9999999999999999998 999999999999999755 255444431 111100
Q ss_pred ---CCCCCccchhccCchHHHHHHHHcCCCCCCc-----------CCCCCCCcHHHHHHHHHHHHH
Q 048746 477 ---MDDNTVPEIQRTNLANVVLILKSLGIDDLVN-----------FDFIDPPPEEALLKALELLFA 528 (755)
Q Consensus 477 ---l~~~~~pei~r~~l~~~~L~l~~~~~~~~~~-----------~~~~~~p~~~~i~~a~~~L~~ 528 (755)
--....++|..-+|+-+.-++.++-+....+ .+|-+ -+.+.....++.|..
T Consensus 374 ~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vrraypy~~-L~~e~f~~v~~~l~~ 438 (814)
T COG1201 374 LALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVRRAYPYAD-LSREDFRLVLRYLAG 438 (814)
T ss_pred HHHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHHhcccccc-CCHHHHHHHHHHHhh
Confidence 0112245555566655544444332221110 13322 256777888888887
No 64
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=4.8e-34 Score=343.54 Aligned_cols=303 Identities=18% Similarity=0.177 Sum_probs=210.1
Q ss_pred cCCCChHHHHHHHHHHHcC------CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCC
Q 048746 128 KTLPIYPYRDELLQAVNEY------QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGV 201 (755)
Q Consensus 128 ~~lPl~~~Q~~~l~~i~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~ 201 (755)
+....++.|.++++.+..+ .+++++|+||||||.++...++.. ...+.+++|++||++||.|+++.+.+.++.
T Consensus 597 ~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~-~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VENHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 3334599999999998886 799999999999994332222222 234668999999999999999999876542
Q ss_pred ---ccccEEeeeeeccc------cCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhc
Q 048746 202 ---KLGHEVGYSIRFED------CTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKF 272 (755)
Q Consensus 202 ---~~g~~vg~~~~~~~------~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~ 272 (755)
.++...|+....+. ......+|+|+||+.+ ..+..+.++++|||||+| |. ++ .....+...
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~~v~~~~L~lLVIDEah-rf---G~--~~~e~lk~l 745 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QSDVKWKDLGLLIVDEEH-RF---GV--RHKERIKAM 745 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hCCCCHhhCCEEEEechh-hc---ch--hHHHHHHhc
Confidence 22222221111111 1124578999999754 234467899999999999 43 11 123444456
Q ss_pred CCCcEEEEeccCCCHHHH--HhhhC-CCCEEEecC-ccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q 048746 273 RSDLKLLISSATLDAEKF--SDYFG-SAPIFKIPG-RRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQ 348 (755)
Q Consensus 273 ~~~~~~il~SAT~~~~~l--~~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~ 348 (755)
+++.++++||||+.+..+ +.... +..++..+. ...++...+.......... .++... ..+++++||||++
T Consensus 746 ~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~----~il~el--~r~gqv~vf~n~i 819 (1147)
T PRK10689 746 RADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVRE----AILREI--LRGGQVYYLYNDV 819 (1147)
T ss_pred CCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHH----HHHHHH--hcCCeEEEEECCH
Confidence 778999999999855433 22222 222333322 2345554443321111111 122111 1368999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccc
Q 048746 349 EEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVK 428 (755)
Q Consensus 349 ~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~ 428 (755)
+.++.+++.|.+.. ++..+..+||+|++++|.+++..|++|+.+|||||+++++|||+|++++||..+.
T Consensus 820 ~~ie~la~~L~~~~-------p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~a---- 888 (1147)
T PRK10689 820 ENIQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA---- 888 (1147)
T ss_pred HHHHHHHHHHHHhC-------CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecC----
Confidence 99999999999864 3467888999999999999999999999999999999999999999999992211
Q ss_pred cccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCc
Q 048746 429 SYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLH 471 (755)
Q Consensus 429 ~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~ 471 (755)
...+.++|.||+||+||.| .|.||.++...
T Consensus 889 -------------d~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 889 -------------DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred -------------CCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 0123357999999999999 59999888653
No 65
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.5e-33 Score=326.75 Aligned_cols=310 Identities=16% Similarity=0.181 Sum_probs=215.9
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHcC------CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHH
Q 048746 118 SALEMLQEERKTLPIYPYRDELLQAVNEY------QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSV 191 (755)
Q Consensus 118 ~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~ 191 (755)
...+.+.+. ....++++|.++++.+.++ .+++++||||||||..+...++.. ...+.++++++||++||.|+
T Consensus 249 ~~~~~~~~~-l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~-~~~g~q~lilaPT~~LA~Q~ 326 (681)
T PRK10917 249 ELLKKFLAS-LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAA-IEAGYQAALMAPTEILAEQH 326 (681)
T ss_pred HHHHHHHHh-CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEEeccHHHHHHH
Confidence 333444333 3445699999999998776 489999999999993333222222 23466899999999999999
Q ss_pred HHHHHHHh---CCccccEEeeeeec------cccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchH
Q 048746 192 AARVSQEM---GVKLGHEVGYSIRF------EDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDIL 262 (755)
Q Consensus 192 a~~~~~~~---~~~~g~~vg~~~~~------~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~ 262 (755)
++.+.+.+ |.+++..+|....- ........+|+|+||+.+.. ...+.++++|||||+| |. ..
T Consensus 327 ~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~H-rf-g~--- 397 (681)
T PRK10917 327 YENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQH-RF-GV--- 397 (681)
T ss_pred HHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechh-hh-hH---
Confidence 99998755 34444444421100 01123468999999987743 3368899999999999 42 11
Q ss_pred HHHHHHHHhcCCCcEEEEeccCCCHHHHHh-hhCCCCEEEe---cCccccceEEEecCCccchHHHHHHHHHHHHhhCCC
Q 048746 263 FGLLKDLIKFRSDLKLLISSATLDAEKFSD-YFGSAPIFKI---PGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSP 338 (755)
Q Consensus 263 ~~~l~~~~~~~~~~~~il~SAT~~~~~l~~-~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (755)
.....+.......++++||||+.+..++- .++...+..+ +....|+...+...... +..+..+.... ..+
T Consensus 398 -~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~~--~~g 471 (681)
T PRK10917 398 -EQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRR---DEVYERIREEI--AKG 471 (681)
T ss_pred -HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccH---HHHHHHHHHHH--HcC
Confidence 12223333444688999999996654432 3333333222 22234566665543322 22223333322 346
Q ss_pred CCEEEEcCCHH--------HHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCccccc
Q 048746 339 GDILVFLTGQE--------EIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETS 410 (755)
Q Consensus 339 ~~iLVF~~~~~--------~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~G 410 (755)
.+++||||..+ .++.+++.|.+.. +++.+..+||+|++++|..+++.|++|+.+|||||+++++|
T Consensus 472 ~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 544 (681)
T PRK10917 472 RQAYVVCPLIEESEKLDLQSAEETYEELQEAF-------PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVG 544 (681)
T ss_pred CcEEEEEcccccccchhHHHHHHHHHHHHHHC-------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeC
Confidence 79999999644 4556677776643 23679999999999999999999999999999999999999
Q ss_pred CcCCCeeEEEeCCCcccccccCCCCccccccccc-CHHhHHhhhcccCCCC-CCEEEEecc
Q 048746 411 LTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPI-SKASAMQRAGRSGRTG-PGKCFRLYT 469 (755)
Q Consensus 411 idip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~-s~~~~~QR~GRaGR~g-~G~~~~l~~ 469 (755)
||+|++++||+++. |. +.+.+.||+||+||.| +|.||.+++
T Consensus 545 iDip~v~~VIi~~~------------------~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 545 VDVPNATVMVIENA------------------ERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred cccCCCcEEEEeCC------------------CCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 99999999999887 53 5788999999999998 599999996
No 66
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=7e-34 Score=343.12 Aligned_cols=291 Identities=20% Similarity=0.222 Sum_probs=198.1
Q ss_pred EEccCCCchh--ccHHHHHHH--hc--------ccCCCccccCccHHHHHHHHHHHHHHH----------hCC-ccccEE
Q 048746 151 IVGETGSGKT--TQIPQYLHE--AG--------YTKQGKVGCTQPRRVAAMSVAARVSQE----------MGV-KLGHEV 207 (755)
Q Consensus 151 i~apTGsGKT--~~ip~~l~~--~~--------~~~~~~ilv~~P~r~la~q~a~~~~~~----------~~~-~~g~~v 207 (755)
|+|||||||| +++|.+... .. ..++.++||++|+|+|+.|+.+++... +|. ..+..+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999 555544221 11 012458999999999999999887541 111 123334
Q ss_pred eeeeeccc------cCCCCceEEEeCcHHHHHHHhCC--CCCCCCCceEeecccccCCccc---hHHHHHHHHHhc-CCC
Q 048746 208 GYSIRFED------CTSEKTILKYMTDGMLLREILSE--PNLESYSVLMVDEAHERTLSTD---ILFGLLKDLIKF-RSD 275 (755)
Q Consensus 208 g~~~~~~~------~~~~~~~I~v~T~g~Ll~~l~~~--~~l~~~~~vIiDEaHer~~~~d---~~~~~l~~~~~~-~~~ 275 (755)
+...+... .....++|+|+||+.|..++.+. ..++++++|||||+| ...... .+...+.++... ..+
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H-~L~g~kRG~~Lel~LeRL~~l~~~~ 159 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVH-AVAGSKRGAHLALSLERLDALLHTS 159 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHH-HhcccccccHHHHHHHHHHHhCCCC
Confidence 32221111 11245799999999998877543 368999999999999 344332 233344455443 457
Q ss_pred cEEEEeccCC-CHHHHHhhhCCC-CEEEec-C--ccccceEEEecCCccch----------------H----HHHHHHHH
Q 048746 276 LKLLISSATL-DAEKFSDYFGSA-PIFKIP-G--RRYPVEIHYTKAPEADY----------------I----DAAIVTVL 330 (755)
Q Consensus 276 ~~~il~SAT~-~~~~l~~~~~~~-~~~~~~-~--~~~~v~~~~~~~~~~~~----------------~----~~~~~~~~ 330 (755)
.|+|++|||+ +.+.+++|++.. ++..+. . +..++++.+ +...... . ......++
T Consensus 160 ~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il 238 (1490)
T PRK09751 160 AQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSIWPYIETGIL 238 (1490)
T ss_pred CeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEE-ecCchhhccccccccccccchhhhhhhhHHHHHHHH
Confidence 8999999999 888999999754 433322 1 123333322 1111000 0 01111222
Q ss_pred HHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhccc------------------C------CCCCceEEEeccCCCCHHHH
Q 048746 331 QIHVTQSPGDILVFLTGQEEIETADEILKHRTRGL------------------G------SKIAELIICPIYANLPTELQ 386 (755)
Q Consensus 331 ~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~------------------~------~~~~~~~v~~lh~~l~~~~r 386 (755)
... ....++||||||+..++.++..|++..... + .......+..|||+|++++|
T Consensus 239 ~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 239 DEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 211 235789999999999999999998753210 0 00012346789999999999
Q ss_pred HHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCE
Q 048746 387 AKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGK 463 (755)
Q Consensus 387 ~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~ 463 (755)
..+++.|++|..++||||+++++||||++|++||++|. |.|.++|+||+|||||...|.
T Consensus 317 ~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gs------------------P~sVas~LQRiGRAGR~~gg~ 375 (1490)
T PRK09751 317 AITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVAT------------------PLSVASGLQRIGRAGHQVGGV 375 (1490)
T ss_pred HHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCC------------------CCCHHHHHHHhCCCCCCCCCc
Confidence 99999999999999999999999999999999999999 999999999999999975443
No 67
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.3e-33 Score=325.01 Aligned_cols=298 Identities=17% Similarity=0.207 Sum_probs=207.4
Q ss_pred CChHHHHHHHHHHHcC------CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhC---C
Q 048746 131 PIYPYRDELLQAVNEY------QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMG---V 201 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~---~ 201 (755)
.+++.|.++++.+..+ .+.+++||||||||..+...++.. ...+.++++++||++||.|+++.+.+.++ .
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~-~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi 313 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAA-IEAGYQVALMAPTEILAEQHYNSLRNLLAPLGI 313 (630)
T ss_pred CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHH-HHcCCcEEEECCHHHHHHHHHHHHHHHhcccCc
Confidence 3599999999998765 368999999999994433333222 23456899999999999999999987653 4
Q ss_pred ccccEEeeeee------ccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCC-
Q 048746 202 KLGHEVGYSIR------FEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRS- 274 (755)
Q Consensus 202 ~~g~~vg~~~~------~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~- 274 (755)
+++...|.... .+.......+|+|+|++.+.+ ...+.++++|||||+| |. .... ...+.....
T Consensus 314 ~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH-~f-g~~q----r~~l~~~~~~ 383 (630)
T TIGR00643 314 EVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQH-RF-GVEQ----RKKLREKGQG 383 (630)
T ss_pred EEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechh-hc-cHHH----HHHHHHhccc
Confidence 44444442111 111223467999999997753 3467899999999999 32 1111 112222222
Q ss_pred --CcEEEEeccCCCHHHHHh-hhCCCCEE---EecCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q 048746 275 --DLKLLISSATLDAEKFSD-YFGSAPIF---KIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQ 348 (755)
Q Consensus 275 --~~~~il~SAT~~~~~l~~-~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~ 348 (755)
..++++||||+.+..++. .++..... ..+....|+...+...... +..+..+.... ..+.+++|||+..
T Consensus 384 ~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~l--~~g~q~~v~~~~i 458 (630)
T TIGR00643 384 GFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEK---DIVYEFIEEEI--AKGRQAYVVYPLI 458 (630)
T ss_pred CCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchH---HHHHHHHHHHH--HhCCcEEEEEccc
Confidence 678999999985554432 22222221 2233334666665543222 22222222211 2367899999976
Q ss_pred H--------HHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEE
Q 048746 349 E--------EIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVI 420 (755)
Q Consensus 349 ~--------~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VI 420 (755)
+ .++.+++.|.+.. ++..+..+||+|++++|..+++.|++|+.+|||||+++++|||+|++++||
T Consensus 459 ~~s~~~~~~~a~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VI 531 (630)
T TIGR00643 459 EESEKLDLKAAEALYERLKKAF-------PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMV 531 (630)
T ss_pred cccccchHHHHHHHHHHHHhhC-------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEE
Confidence 3 4556666666543 357899999999999999999999999999999999999999999999999
Q ss_pred eCCCcccccccCCCCccccccccc-CHHhHHhhhcccCCCC-CCEEEEecc
Q 048746 421 DPGFSKVKSYNPRTGMESLLVHPI-SKASAMQRAGRSGRTG-PGKCFRLYT 469 (755)
Q Consensus 421 d~g~~k~~~~~~~~~~~~l~~~p~-s~~~~~QR~GRaGR~g-~G~~~~l~~ 469 (755)
+++. |. +.+.+.||+||+||.| +|.||.++.
T Consensus 532 i~~~------------------~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 532 IEDA------------------ERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred EeCC------------------CcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 8887 43 6789999999999998 699999984
No 68
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3e-33 Score=294.07 Aligned_cols=313 Identities=20% Similarity=0.193 Sum_probs=230.2
Q ss_pred hHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEee--e
Q 048746 133 YPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGY--S 210 (755)
Q Consensus 133 ~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~--~ 210 (755)
..||..+......+ +++++.|||-|||+.+...+.......++++++++||+-|+.|.++.+.+.+|.+....+.. .
T Consensus 17 R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGe 95 (542)
T COG1111 17 RLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGE 95 (542)
T ss_pred HHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCC
Confidence 78888888775554 89999999999997777666543233344899999999999999999999998876544332 1
Q ss_pred eecccc--CCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC--
Q 048746 211 IRFEDC--TSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL-- 285 (755)
Q Consensus 211 ~~~~~~--~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~-- 285 (755)
++-+.. .-...+|+|+||+.+.+-+..+. ++.+++++|+|||| |....-....+.+...+...+..+++||||+
T Consensus 96 v~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs 174 (542)
T COG1111 96 VRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILGLTASPGS 174 (542)
T ss_pred CChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEEEecCCCC
Confidence 221111 11357899999999988776654 89999999999999 8888877888888888888889999999999
Q ss_pred CHHHHHhhhCCCCEEEecCc----------cccceEEEecCCc------------------------------------c
Q 048746 286 DAEKFSDYFGSAPIFKIPGR----------RYPVEIHYTKAPE------------------------------------A 319 (755)
Q Consensus 286 ~~~~l~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~------------------------------------~ 319 (755)
+.+.+.+...+-.+-.+.-+ ...+++.+....- .
T Consensus 175 ~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~k 254 (542)
T COG1111 175 DLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKK 254 (542)
T ss_pred CHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHh
Confidence 67777776554322221111 1122222221000 0
Q ss_pred c-------------------------------------------------hH----------------------------
Q 048746 320 D-------------------------------------------------YI---------------------------- 322 (755)
Q Consensus 320 ~-------------------------------------------------~~---------------------------- 322 (755)
+ |+
T Consensus 255 dl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al 334 (542)
T COG1111 255 DLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRAL 334 (542)
T ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHH
Confidence 0 00
Q ss_pred ----------------HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEe-------ccC
Q 048746 323 ----------------DAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICP-------IYA 379 (755)
Q Consensus 323 ----------------~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~-------lh~ 379 (755)
+.....+.+.....++.++|||++.++.++.+...|.+.+.. ..+.. ...
T Consensus 335 ~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~-------~~~rFiGQa~r~~~~ 407 (542)
T COG1111 335 RLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIK-------ARVRFIGQASREGDK 407 (542)
T ss_pred HHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCc-------ceeEEeecccccccc
Confidence 000001111112234578999999999999999999986532 21111 236
Q ss_pred CCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCC
Q 048746 380 NLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRT 459 (755)
Q Consensus 380 ~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~ 459 (755)
||++.+|.++++.|+.|..+|||||+++|.|+|||++++||-|+. -.|..-++||.|||||.
T Consensus 408 GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEp------------------vpSeIR~IQR~GRTGR~ 469 (542)
T COG1111 408 GMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEP------------------VPSEIRSIQRKGRTGRK 469 (542)
T ss_pred ccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecC------------------CcHHHHHHHhhCccccC
Confidence 899999999999999999999999999999999999999998777 67888999999999999
Q ss_pred CCCEEEEeccCcc
Q 048746 460 GPGKCFRLYTLHN 472 (755)
Q Consensus 460 g~G~~~~l~~~~~ 472 (755)
.+|.+|.|+++..
T Consensus 470 r~Grv~vLvt~gt 482 (542)
T COG1111 470 RKGRVVVLVTEGT 482 (542)
T ss_pred CCCeEEEEEecCc
Confidence 9999999999873
No 69
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-32 Score=303.36 Aligned_cols=306 Identities=20% Similarity=0.216 Sum_probs=225.7
Q ss_pred CChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEe
Q 048746 131 PIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVG 208 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg 208 (755)
-..+-|.++|+++.++++++++.|||+||| ||||.++. .|.+||+.|..+|...+.+.+.. .|......-+
T Consensus 17 ~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~l~~-~Gi~A~~lnS 89 (590)
T COG0514 17 SFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQLEA-AGIRAAYLNS 89 (590)
T ss_pred ccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHHHHH-cCceeehhhc
Confidence 346779999999999999999999999999 99999886 35799999999999988877766 4543322111
Q ss_pred eeeecc------ccCCCCceEEEeCcHHHHHHH-hCCCCCCCCCceEeecccccCCcc-chHHHH--HHHHHhcCCCcEE
Q 048746 209 YSIRFE------DCTSEKTILKYMTDGMLLREI-LSEPNLESYSVLMVDEAHERTLST-DILFGL--LKDLIKFRSDLKL 278 (755)
Q Consensus 209 ~~~~~~------~~~~~~~~I~v~T~g~Ll~~l-~~~~~l~~~~~vIiDEaHer~~~~-d~~~~~--l~~~~~~~~~~~~ 278 (755)
.....+ .......+++|.+|++|..-- .+...-..+++++|||||+-+-+. ||...+ +..+....++.++
T Consensus 90 ~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~ 169 (590)
T COG0514 90 TLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPV 169 (590)
T ss_pred ccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCE
Confidence 111111 112345799999999885421 111124578999999999776554 555544 3445556678999
Q ss_pred EEeccCCCHH---HHHhhhC-CCCEEEecCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHH
Q 048746 279 LISSATLDAE---KFSDYFG-SAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETA 354 (755)
Q Consensus 279 il~SAT~~~~---~l~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l 354 (755)
+.+|||.+.. ++.+.++ +.+...+.+-. .-.++|...+..+...... .+.. ......+..||||.|++.++.+
T Consensus 170 ~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd-RpNi~~~v~~~~~~~~q~~-fi~~-~~~~~~~~GIIYc~sRk~~E~i 246 (590)
T COG0514 170 LALTATATPRVRDDIREQLGLQDANIFRGSFD-RPNLALKVVEKGEPSDQLA-FLAT-VLPQLSKSGIIYCLTRKKVEEL 246 (590)
T ss_pred EEEeCCCChHHHHHHHHHhcCCCcceEEecCC-CchhhhhhhhcccHHHHHH-HHHh-hccccCCCeEEEEeeHHhHHHH
Confidence 9999999654 3444443 23322222221 1223333322222222211 2221 2244567799999999999999
Q ss_pred HHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCC
Q 048746 355 DEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRT 434 (755)
Q Consensus 355 ~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~ 434 (755)
++.|... ++.+..|||||+.++|..+.+.|..+..+|+|||+++++|||.|||++|||+++
T Consensus 247 a~~L~~~---------g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~l---------- 307 (590)
T COG0514 247 AEWLRKN---------GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDL---------- 307 (590)
T ss_pred HHHHHHC---------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecC----------
Confidence 9999985 388999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 435 GMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 435 ~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
|.|.++|.|-+|||||.| +..|+.||++.+.
T Consensus 308 --------P~s~EsYyQE~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 308 --------PGSIESYYQETGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred --------CCCHHHHHHHHhhccCCCCcceEEEeeccccH
Confidence 999999999999999999 6999999998875
No 70
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=9.1e-33 Score=301.73 Aligned_cols=290 Identities=21% Similarity=0.234 Sum_probs=192.2
Q ss_pred eEEEEccCCCchhccHHHHHHHhcc-cCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeee------ecc-----c
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEAGY-TKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSI------RFE-----D 215 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~~~-~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~------~~~-----~ 215 (755)
+++++||||||||.+...+++.... ....+++|++|+|+|+.|+++++...++..++...|... ..+ .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 5899999999999666655554321 234689999999999999999999988866553333111 000 0
Q ss_pred ---------cCCCCceEEEeCcHHHHHHHhCCC-----CC--CCCCceEeecccccCCcc--chHHHHHHHHHhcCCCcE
Q 048746 216 ---------CTSEKTILKYMTDGMLLREILSEP-----NL--ESYSVLMVDEAHERTLST--DILFGLLKDLIKFRSDLK 277 (755)
Q Consensus 216 ---------~~~~~~~I~v~T~g~Ll~~l~~~~-----~l--~~~~~vIiDEaHer~~~~--d~~~~~l~~~~~~~~~~~ 277 (755)
.......|+++||+.++..+.... .+ -..++||||||| +.... +++..+++.+. ..+.|
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h-~~~~~~~~~l~~~l~~l~--~~~~~ 157 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVH-FYDEYTLALILAVLEVLK--DNDVP 157 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCC-CCCHHHHHHHHHHHHHHH--HcCCC
Confidence 001235799999999988776521 11 134899999999 44442 23333333332 35789
Q ss_pred EEEeccCCCHHHHHhhhCCCCEEEecCc--ccc---c-eEEEe--cCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q 048746 278 LLISSATLDAEKFSDYFGSAPIFKIPGR--RYP---V-EIHYT--KAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQE 349 (755)
Q Consensus 278 ~il~SAT~~~~~l~~~~~~~~~~~~~~~--~~~---v-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~ 349 (755)
+++||||++ +.+.+++........... ..+ . ...+. ........ ..+..++.. ...++++||||++++
T Consensus 158 ~i~~SATlp-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~--~~~~~~~lVf~~t~~ 233 (358)
T TIGR01587 158 ILLMSATLP-KFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEI-SSLERLLEF--IKKGGKIAIIVNTVD 233 (358)
T ss_pred EEEEecCch-HHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCH-HHHHHHHHH--hhCCCeEEEEECCHH
Confidence 999999996 445555533211110100 000 0 11111 11111111 122222221 234689999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHH----HhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCc
Q 048746 350 EIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAK----IFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFS 425 (755)
Q Consensus 350 ~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~----i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~ 425 (755)
+++.+++.|.+.+ .+..+..+||++++.+|.+ +++.|++|..+|||||+++++||||+ +++||++..
T Consensus 234 ~~~~~~~~L~~~~-------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~- 304 (358)
T TIGR01587 234 RAQEFYQQLKENA-------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELA- 304 (358)
T ss_pred HHHHHHHHHHhhc-------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCC-
Confidence 9999999998754 2346889999999999976 48899999999999999999999997 788886544
Q ss_pred ccccccCCCCcccccccccCHHhHHhhhcccCCCCC-----CEEEEeccCcc
Q 048746 426 KVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-----GKCFRLYTLHN 472 (755)
Q Consensus 426 k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-----G~~~~l~~~~~ 472 (755)
+..+|+||+||+||.|. |.+|.++...+
T Consensus 305 -------------------~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 305 -------------------PIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred -------------------CHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 46899999999999873 36777776544
No 71
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.98 E-value=4.4e-31 Score=293.64 Aligned_cols=316 Identities=22% Similarity=0.294 Sum_probs=219.6
Q ss_pred cCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHh-cccCCCccccCccHHHHHHHHHHHHHHHhCCccccE
Q 048746 128 KTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEA-GYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHE 206 (755)
Q Consensus 128 ~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~ 206 (755)
..+++..||.++....+ ++++||++|||+|||+.+..+++.. .+.++++|++++|++-|+.|+...+.. ++.+.. .
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~-~~~~~~-~ 135 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSI-YLIPYS-V 135 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhh-ccCccc-c
Confidence 55889999999999988 9999999999999998777666654 344568999999999999999866655 454421 1
Q ss_pred EeeeeeccccC------CCCceEEEeCcHHHHHHHhCCC--CCCCCCceEeecccccCCccchHHHHHHHHHhcC-CCcE
Q 048746 207 VGYSIRFEDCT------SEKTILKYMTDGMLLREILSEP--NLESYSVLMVDEAHERTLSTDILFGLLKDLIKFR-SDLK 277 (755)
Q Consensus 207 vg~~~~~~~~~------~~~~~I~v~T~g~Ll~~l~~~~--~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~-~~~~ 277 (755)
.| ........ -...++.|+||.+|.+.|.+.. .|+.++++|||||| |.........+.+.++... ...|
T Consensus 136 T~-~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~q 213 (746)
T KOG0354|consen 136 TG-QLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGNQ 213 (746)
T ss_pred ee-eccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhcccc
Confidence 11 11111111 1357899999999999886543 47889999999999 7777766666666665543 3349
Q ss_pred EEEeccCC--CHHHHHhhhCCCCEEEecC----------------ccccceEE---------------------------
Q 048746 278 LLISSATL--DAEKFSDYFGSAPIFKIPG----------------RRYPVEIH--------------------------- 312 (755)
Q Consensus 278 ~il~SAT~--~~~~l~~~~~~~~~~~~~~----------------~~~~v~~~--------------------------- 312 (755)
+|++|||+ +.+...++..+-..- +.- ...|+++.
T Consensus 214 ILgLTASpG~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~ 292 (746)
T KOG0354|consen 214 ILGLTASPGSKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLI 292 (746)
T ss_pred EEEEecCCCccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcc
Confidence 99999999 445555543321000 000 00011000
Q ss_pred --------Eec------------CCc------------------------------------------------------
Q 048746 313 --------YTK------------APE------------------------------------------------------ 318 (755)
Q Consensus 313 --------~~~------------~~~------------------------------------------------------ 318 (755)
|.. .+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~ 372 (746)
T KOG0354|consen 293 EISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARL 372 (746)
T ss_pred ccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchh
Confidence 000 000
Q ss_pred ---------------------cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEec
Q 048746 319 ---------------------ADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPI 377 (755)
Q Consensus 319 ---------------------~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~l 377 (755)
...++.....+.+.....+..++|||+.+++.+..+...|.+.. ..+.. +.+.+..-
T Consensus 373 ~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~-~~~ir-~~~fiGq~ 450 (746)
T KOG0354|consen 373 IRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLH-ELGIK-AEIFIGQG 450 (746)
T ss_pred hHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhh-hcccc-cceeeecc
Confidence 00001111122222233456789999999999999999998522 11111 11222211
Q ss_pred ----cCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhh
Q 048746 378 ----YANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRA 453 (755)
Q Consensus 378 ----h~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~ 453 (755)
-.+|++.+|.++++.|+.|..+|||||+|+|.|+||+.++.||-||. -.+....+||.
T Consensus 451 ~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~------------------~snpIrmIQrr 512 (746)
T KOG0354|consen 451 KSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDY------------------SSNPIRMVQRR 512 (746)
T ss_pred ccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecC------------------CccHHHHHHHh
Confidence 25899999999999999999999999999999999999999999999 78899999999
Q ss_pred cccCCCCCCEEEEeccC
Q 048746 454 GRSGRTGPGKCFRLYTL 470 (755)
Q Consensus 454 GRaGR~g~G~~~~l~~~ 470 (755)
|| ||...|+|+.|++.
T Consensus 513 GR-gRa~ns~~vll~t~ 528 (746)
T KOG0354|consen 513 GR-GRARNSKCVLLTTG 528 (746)
T ss_pred cc-ccccCCeEEEEEcc
Confidence 99 99999999999994
No 72
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=1.6e-30 Score=294.01 Aligned_cols=295 Identities=15% Similarity=0.104 Sum_probs=201.0
Q ss_pred CChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeee
Q 048746 131 PIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYS 210 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~ 210 (755)
.++++|.++++.+..+++.++++|||+|||..+..+.........++++|++||++|+.|+.+++.+..........+ .
T Consensus 114 ~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~-i 192 (501)
T PHA02558 114 EPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHK-I 192 (501)
T ss_pred CCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeE-E
Confidence 449999999999888999999999999999655443322111223489999999999999999998744322211111 1
Q ss_pred eeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCCHH--
Q 048746 211 IRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLDAE-- 288 (755)
Q Consensus 211 ~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~~-- 288 (755)
.... .......|+|+|++.+.+.. ...+.++++||+|||| +..... +..++. ...+..++++||||+...
T Consensus 193 ~~g~-~~~~~~~I~VaT~qsl~~~~--~~~~~~~~~iIvDEaH-~~~~~~-~~~il~---~~~~~~~~lGLTATp~~~~~ 264 (501)
T PHA02558 193 YSGT-AKDTDAPIVVSTWQSAVKQP--KEWFDQFGMVIVDECH-LFTGKS-LTSIIT---KLDNCKFKFGLTGSLRDGKA 264 (501)
T ss_pred ecCc-ccCCCCCEEEeeHHHHhhch--hhhccccCEEEEEchh-cccchh-HHHHHH---hhhccceEEEEeccCCCccc
Confidence 1111 12235789999999997653 2257899999999999 554332 222222 233456799999999321
Q ss_pred ---HHHhhhCCCCEEEec-------CccccceEEE--ecCCc--------cchH------------HHHHHHHHHHHhhC
Q 048746 289 ---KFSDYFGSAPIFKIP-------GRRYPVEIHY--TKAPE--------ADYI------------DAAIVTVLQIHVTQ 336 (755)
Q Consensus 289 ---~l~~~~~~~~~~~~~-------~~~~~v~~~~--~~~~~--------~~~~------------~~~~~~~~~~~~~~ 336 (755)
.+..+|+.. ...+. |...++++.. ...+. .++. ...+..+..... .
T Consensus 265 ~~~~~~~~fG~i-~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~-~ 342 (501)
T PHA02558 265 NILQYVGLFGDI-FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLA-K 342 (501)
T ss_pred cHHHHHHhhCCc-eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHH-h
Confidence 133455531 11111 1111222111 11000 0110 011111111112 3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeC-CcccccCcCCC
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLAT-NIAETSLTIDG 415 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT-~i~~~Gidip~ 415 (755)
.++++|||+++.++++.+++.|.+.+ ..+..+||++++++|..+++.|++|...||||| +++++|+|+|+
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~g---------~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ 413 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKVY---------DKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKN 413 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHcC---------CCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccccc
Confidence 45789999999999999999998843 678899999999999999999999999999998 89999999999
Q ss_pred eeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCE
Q 048746 416 IKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGK 463 (755)
Q Consensus 416 v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~ 463 (755)
+++||.+.. +.|...|+||+||+||.++|+
T Consensus 414 ld~vIl~~p------------------~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 414 LHHVIFAHP------------------SKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred ccEEEEecC------------------CcchhhhhhhhhccccCCCCC
Confidence 999997766 888999999999999999765
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=2.7e-30 Score=279.73 Aligned_cols=285 Identities=16% Similarity=0.198 Sum_probs=186.9
Q ss_pred HHHHHHHHHHcCC--eEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhC-------Ccccc
Q 048746 135 YRDELLQAVNEYQ--VLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMG-------VKLGH 205 (755)
Q Consensus 135 ~Q~~~l~~i~~~~--~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~-------~~~g~ 205 (755)
+|.++++++.+++ +++++||||||||......++. ...++++++|+++|+.|+++++.+.+. ..+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~----~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~ 76 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH----GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLH 76 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH----cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEE
Confidence 5899999998775 4899999999999443322222 234789999999999999999887652 12222
Q ss_pred EEeeeee----cc------------------ccCCCCceEEEeCcHHHHHHHhC---CC------CCCCCCceEeecccc
Q 048746 206 EVGYSIR----FE------------------DCTSEKTILKYMTDGMLLREILS---EP------NLESYSVLMVDEAHE 254 (755)
Q Consensus 206 ~vg~~~~----~~------------------~~~~~~~~I~v~T~g~Ll~~l~~---~~------~l~~~~~vIiDEaHe 254 (755)
..|-... .. ........|+++||++|...+.. .+ .+.++++|||||+|.
T Consensus 77 ~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~ 156 (357)
T TIGR03158 77 VSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHL 156 (357)
T ss_pred ecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccc
Confidence 2221000 00 00012466788888888755432 11 257899999999996
Q ss_pred cCCccc-hH---HHHHHHHHhcCCCcEEEEeccCCCHHH---HHhh-hCCCCEEEecCc--cc-----------------
Q 048746 255 RTLSTD-IL---FGLLKDLIKFRSDLKLLISSATLDAEK---FSDY-FGSAPIFKIPGR--RY----------------- 307 (755)
Q Consensus 255 r~~~~d-~~---~~~l~~~~~~~~~~~~il~SAT~~~~~---l~~~-~~~~~~~~~~~~--~~----------------- 307 (755)
.+.... .+ +.....+.......++++||||++... +.+. +.+.++..+.|. .+
T Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~ 236 (357)
T TIGR03158 157 YDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRP 236 (357)
T ss_pred cCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccce
Confidence 553222 12 233333332333579999999997652 2232 124566666666 11
Q ss_pred ---cceEEEecCCcc--chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCC
Q 048746 308 ---PVEIHYTKAPEA--DYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLP 382 (755)
Q Consensus 308 ---~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~ 382 (755)
++++.+...+.. ..+......+.+.....+++++||||++++.++.++..|++.. .++.+..+||.++
T Consensus 237 ~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~-------~~~~~~~l~g~~~ 309 (357)
T TIGR03158 237 VLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG-------LGDDIGRITGFAP 309 (357)
T ss_pred eccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC-------CCceEEeeecCCC
Confidence 355555442211 1122222333333333456799999999999999999998743 2356788999999
Q ss_pred HHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccC
Q 048746 383 TELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSG 457 (755)
Q Consensus 383 ~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaG 457 (755)
+.+|.++. +..|||||+++++|||||.+ +|| + - |.+.++|+||+||+|
T Consensus 310 ~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi-~-~------------------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 310 KKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI-F-S------------------ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE-E-C------------------CCCHHHHhhhcccCC
Confidence 99998764 57899999999999999987 555 1 1 688999999999998
No 74
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.5e-30 Score=294.24 Aligned_cols=439 Identities=17% Similarity=0.196 Sum_probs=287.6
Q ss_pred CCChHHHHHHHHHHH-cCCeEEEEccCCCchhccHH-HHHHHhcc--c-------CCCccccCccHHHHHHHHHHHHHHH
Q 048746 130 LPIYPYRDELLQAVN-EYQVLVIVGETGSGKTTQIP-QYLHEAGY--T-------KQGKVGCTQPRRVAAMSVAARVSQE 198 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~-~~~~vii~apTGsGKT~~ip-~~l~~~~~--~-------~~~~ilv~~P~r~la~q~a~~~~~~ 198 (755)
.-+..+|..+.++.. ...++++|||||+|||-.+. -++.+.+. . ...+|++++|.++|+..+...+++.
T Consensus 308 ~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkR 387 (1674)
T KOG0951|consen 308 QSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKR 387 (1674)
T ss_pred hhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhh
Confidence 337899999999854 46799999999999993333 33333221 1 1228999999999999999888775
Q ss_pred h---CCccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCC---CCCCCCCceEeecccccCCccc---hHHHHHHHH
Q 048746 199 M---GVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSE---PNLESYSVLMVDEAHERTLSTD---ILFGLLKDL 269 (755)
Q Consensus 199 ~---~~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~---~~l~~~~~vIiDEaHer~~~~d---~~~~~l~~~ 269 (755)
+ |..++...|-.. ........|.|+++||+.---.-.++ ...+-++++||||.| +++.+ .+..+..+.
T Consensus 388 la~~GI~V~ElTgD~~-l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIH--LLhDdRGpvLESIVaRt 464 (1674)
T KOG0951|consen 388 LAPLGITVLELTGDSQ-LGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIH--LLHDDRGPVLESIVART 464 (1674)
T ss_pred ccccCcEEEEeccccc-chhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhh--hcccccchHHHHHHHHH
Confidence 3 555555444211 11223367999999997542111221 134457899999999 55333 333333222
Q ss_pred H----hcCCCcEEEEeccCC-CHHHHHhhhCCCC--E--EEecCccccceEEEecCCccchHHH---HHHH-HHHHHhhC
Q 048746 270 I----KFRSDLKLLISSATL-DAEKFSDYFGSAP--I--FKIPGRRYPVEIHYTKAPEADYIDA---AIVT-VLQIHVTQ 336 (755)
Q Consensus 270 ~----~~~~~~~~il~SAT~-~~~~l~~~~~~~~--~--~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~-~~~~~~~~ 336 (755)
. ......+++++|||+ |-++++.|+.-.+ + +-..-|+.|+++.|......+.... .-.. .-++....
T Consensus 465 ~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~a 544 (1674)
T KOG0951|consen 465 FRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHA 544 (1674)
T ss_pred HHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhC
Confidence 2 234578999999999 7778888776444 2 2234567899999987665443322 1111 11223334
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcc---------c----------------CC---CCCceEEEeccCCCCHHHHHH
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRG---------L----------------GS---KIAELIICPIYANLPTELQAK 388 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~---------~----------------~~---~~~~~~v~~lh~~l~~~~r~~ 388 (755)
..+++|||+.++++.-+.++.+++..-. - +. ++-+..+..+|+||+..+|..
T Consensus 545 gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~ 624 (1674)
T KOG0951|consen 545 GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDREL 624 (1674)
T ss_pred CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHH
Confidence 4589999999999999999998843210 0 00 112345777899999999999
Q ss_pred HhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-----CCE
Q 048746 389 IFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-----PGK 463 (755)
Q Consensus 389 i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-----~G~ 463 (755)
+.+.|+.|.++|+|+|.++++|+|+|+-+++| +....|||.+|... +.|+.+.+||.|||||.+ .|+
T Consensus 625 ~EdLf~~g~iqvlvstatlawgvnlpahtVii----kgtqvy~pekg~w~----elsp~dv~qmlgragrp~~D~~gegi 696 (1674)
T KOG0951|consen 625 VEDLFADGHIQVLVSTATLAWGVNLPAHTVII----KGTQVYDPEKGRWT----ELSPLDVMQMLGRAGRPQYDTCGEGI 696 (1674)
T ss_pred HHHHHhcCceeEEEeehhhhhhcCCCcceEEe----cCccccCcccCccc----cCCHHHHHHHHhhcCCCccCcCCcee
Confidence 99999999999999999999999999999999 89999999999877 899999999999999988 344
Q ss_pred EEEeccCccccccCCCCC--ccchhccCchHHHHHHHHcCCCCCCcC-CC-----------------------CCCC---
Q 048746 464 CFRLYTLHNYHKDMDDNT--VPEIQRTNLANVVLILKSLGIDDLVNF-DF-----------------------IDPP--- 514 (755)
Q Consensus 464 ~~~l~~~~~~~~~l~~~~--~pei~r~~l~~~~L~l~~~~~~~~~~~-~~-----------------------~~~p--- 514 (755)
.+.=+++-.|.-.+...+ .++-.-..|...+-.-..+|+....+- +| .|++
T Consensus 697 iit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~ 776 (1674)
T KOG0951|consen 697 IITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQ 776 (1674)
T ss_pred eccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHH
Confidence 444444333321111111 222222222222222222332211110 11 1222
Q ss_pred -cHHHHHHHHHHHHHccCccCC---C--CCCHHHHHhhcCCCChhhHHHHHhcccccchHH-HHhhhccccc
Q 048746 515 -PEEALLKALELLFALSALNKL---G--ELTKVGRRMAEFPLDPMLSKMIVASDKDKCSDE-IITIAAMLSV 579 (755)
Q Consensus 515 -~~~~i~~a~~~L~~~g~l~~~---~--~lT~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~-~~~i~a~ls~ 579 (755)
-.+.+..|.-.|.+.|.|--+ | ..|.+|+..+.+++.-......-......|.+. +..|-++-.+
T Consensus 777 ~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seE 848 (1674)
T KOG0951|consen 777 RRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEE 848 (1674)
T ss_pred HHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccc
Confidence 124567888899999988533 2 589999999999999888887777777666654 3444444433
No 75
>PRK09401 reverse gyrase; Reviewed
Probab=99.97 E-value=2.3e-30 Score=312.38 Aligned_cols=290 Identities=18% Similarity=0.171 Sum_probs=194.9
Q ss_pred CCCChHHHHHHHHHHHcCCeEEEEccCCCchhc-cHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEE
Q 048746 129 TLPIYPYRDELLQAVNEYQVLVIVGETGSGKTT-QIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEV 207 (755)
Q Consensus 129 ~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~-~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~v 207 (755)
..| +++|.++++.+..|++++++||||||||+ .+|..+... .++++++|++|||+||.|+++++.+. +...+..+
T Consensus 79 ~~p-t~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~--~~g~~alIL~PTreLa~Qi~~~l~~l-~~~~~~~~ 154 (1176)
T PRK09401 79 SKP-WSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLA--KKGKKSYIIFPTRLLVEQVVEKLEKF-GEKVGCGV 154 (1176)
T ss_pred CCC-cHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEeccHHHHHHHHHHHHHH-hhhcCceE
Confidence 345 99999999999999999999999999994 344333222 24568999999999999999998874 43333322
Q ss_pred eeeeeccc------------cCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCc-----------cchHHH
Q 048746 208 GYSIRFED------------CTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLS-----------TDILFG 264 (755)
Q Consensus 208 g~~~~~~~------------~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~-----------~d~~~~ 264 (755)
........ ......+|+|+|||+|.+.+. .....++++||||||| +++. .+|...
T Consensus 155 ~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD-~~L~~~k~id~~l~~lGF~~~ 232 (1176)
T PRK09401 155 KILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVD-AVLKSSKNIDKLLYLLGFSEE 232 (1176)
T ss_pred EEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChH-HhhhcccchhhHHHhCCCCHH
Confidence 21111110 022457999999999998875 3345569999999999 5654 334211
Q ss_pred HHHHHHh-cC------------------------CCcEEEEeccCCCHHHHH-hhhCCCCEEEecCc---cccceEEEec
Q 048746 265 LLKDLIK-FR------------------------SDLKLLISSATLDAEKFS-DYFGSAPIFKIPGR---RYPVEIHYTK 315 (755)
Q Consensus 265 ~l~~~~~-~~------------------------~~~~~il~SAT~~~~~l~-~~~~~~~~~~~~~~---~~~v~~~~~~ 315 (755)
.+..+.. .+ .+.|++++|||+++..+. .+|...-.+.+... ...+...|..
T Consensus 233 ~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~ 312 (1176)
T PRK09401 233 DIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIV 312 (1176)
T ss_pred HHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEEE
Confidence 1111111 11 167899999999654222 22222111222221 2345556654
Q ss_pred CCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHH---HHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCC
Q 048746 316 APEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEE---IETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEP 392 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~ 392 (755)
.+ +... .+..+.... +..+||||+++.. ++.+++.|... ++.+..+||+| .+.++.
T Consensus 313 ~~--~k~~----~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~---------gi~v~~~hg~l-----~~~l~~ 371 (1176)
T PRK09401 313 DE--DSVE----KLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDL---------GINAELAISGF-----ERKFEK 371 (1176)
T ss_pred cc--cHHH----HHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHC---------CCcEEEEeCcH-----HHHHHH
Confidence 43 2222 222222222 3579999999777 99999999884 38899999999 234599
Q ss_pred CCCCCcEEEEe----CCcccccCcCCC-eeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccC
Q 048746 393 TPEGARKVVLA----TNIAETSLTIDG-IKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSG 457 (755)
Q Consensus 393 f~~g~~~vlva----T~i~~~Gidip~-v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaG 457 (755)
|++|+.+|||| ||+++||||+|+ |++||++|+.+... .-.....+.||.||+-
T Consensus 372 F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~------------~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 372 FEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKF------------SLEEELAPPFLLLRLL 429 (1176)
T ss_pred HHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEE------------eccccccCHHHHHHHH
Confidence 99999999999 799999999999 89999999922111 0015677899999984
No 76
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=296.73 Aligned_cols=329 Identities=24% Similarity=0.255 Sum_probs=229.8
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHH
Q 048746 120 LEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQ 197 (755)
Q Consensus 120 ~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~ 197 (755)
...+.+.+..- +|++|.+++..+.+|+++||+.+|||||| |++|.+-. ....+..++|++.||++||.++++++.+
T Consensus 60 ~~~l~~~g~~~-lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~-~l~~~~a~AL~lYPtnALa~DQ~~rl~~ 137 (851)
T COG1205 60 KSALVKAGIER-LYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDH-LLRDPSARALLLYPTNALANDQAERLRE 137 (851)
T ss_pred HHHHHHhcccc-ccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHH-HhhCcCccEEEEechhhhHhhHHHHHHH
Confidence 44555554444 69999999999999999999999999999 66665432 2233345889999999999999999988
Q ss_pred HhCCccc-cEEe-e--eeecccc---CCCCceEEEeCcHHHHHHHhCCC-----CCCCCCceEeeccc-ccCCccchHHH
Q 048746 198 EMGVKLG-HEVG-Y--SIRFEDC---TSEKTILKYMTDGMLLREILSEP-----NLESYSVLMVDEAH-ERTLSTDILFG 264 (755)
Q Consensus 198 ~~~~~~g-~~vg-~--~~~~~~~---~~~~~~I~v~T~g~Ll~~l~~~~-----~l~~~~~vIiDEaH-er~~~~d~~~~ 264 (755)
......+ ...+ | ....+.. ....++|++++|.||...++... .++++++||+||+| .|+....-...
T Consensus 138 ~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~ 217 (851)
T COG1205 138 LISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVAL 217 (851)
T ss_pred HHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHH
Confidence 6532221 1111 1 1111111 24578999999999988665432 47789999999999 56655555555
Q ss_pred HHHHHHhc----CCCcEEEEeccCC-CHHHHHhhhCCCCEEE-ecCcccc--ceEEEecCCc---------cchHHHHHH
Q 048746 265 LLKDLIKF----RSDLKLLISSATL-DAEKFSDYFGSAPIFK-IPGRRYP--VEIHYTKAPE---------ADYIDAAIV 327 (755)
Q Consensus 265 ~l~~~~~~----~~~~~~il~SAT~-~~~~l~~~~~~~~~~~-~~~~~~~--v~~~~~~~~~---------~~~~~~~~~ 327 (755)
+++++... ..+.++|.+|||+ ++..+++-+.+..... +.+...| ...+....|. .+.. ....
T Consensus 218 llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~-~~~~ 296 (851)
T COG1205 218 LLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSAL-AELA 296 (851)
T ss_pred HHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchH-HHHH
Confidence 56665543 3479999999999 6555554433333333 4443332 2222222220 0111 1111
Q ss_pred HHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcc
Q 048746 328 TVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIA 407 (755)
Q Consensus 328 ~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~ 407 (755)
.+..... ..+-++|||+.++..++.+...........+ ......+..++|+|+.++|.++...|+.|+..++++|+++
T Consensus 297 ~~~~~~~-~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Al 374 (851)
T COG1205 297 TLAALLV-RNGIQTLVFFRSRKQVELLYLSPRRRLVREG-GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNAL 374 (851)
T ss_pred HHHHHHH-HcCceEEEEEehhhhhhhhhhchhHHHhhcc-hhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhh
Confidence 2222111 2367899999999999999855555443333 2223568889999999999999999999999999999999
Q ss_pred cccCcCCCeeEEEeCCCcccccccCCCCccccccccc-CHHhHHhhhcccCCCC-CCEEEEeccCc
Q 048746 408 ETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPI-SKASAMQRAGRSGRTG-PGKCFRLYTLH 471 (755)
Q Consensus 408 ~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~-s~~~~~QR~GRaGR~g-~G~~~~l~~~~ 471 (755)
+-||||.+++.||.+|+ |. +..+++||+|||||.+ .+..+..+..+
T Consensus 375 elgidiG~ldavi~~g~------------------P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 375 ELGIDIGSLDAVIAYGY------------------PGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred hhceeehhhhhHhhcCC------------------CCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 99999999999999999 99 9999999999999999 45555555433
No 77
>PRK13766 Hef nuclease; Provisional
Probab=99.97 E-value=3.1e-29 Score=300.08 Aligned_cols=314 Identities=21% Similarity=0.246 Sum_probs=214.4
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCc---cccE
Q 048746 130 LPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVK---LGHE 206 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~---~g~~ 206 (755)
+..+++|.+++..+..+ ++++++|||+|||.+....+.......+++++|++||++|+.|+++.+.+.++.. +...
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~ 92 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVF 92 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 34489999999887766 8999999999999644433333323345799999999999999999998877653 2222
Q ss_pred Eeeeeeccc--cCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEecc
Q 048746 207 VGYSIRFED--CTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSA 283 (755)
Q Consensus 207 vg~~~~~~~--~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SA 283 (755)
.| ...... ..-...+|+|+||+++...+.... .+.++++||||||| |.........+.+......+...+++|||
T Consensus 93 ~g-~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH-~~~~~~~~~~i~~~~~~~~~~~~il~lTa 170 (773)
T PRK13766 93 TG-EVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH-RAVGNYAYVYIAERYHEDAKNPLVLGLTA 170 (773)
T ss_pred eC-CCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc-cccccccHHHHHHHHHhcCCCCEEEEEEc
Confidence 22 111100 011356899999999988775544 67899999999999 65544444444555555556678999999
Q ss_pred CC--CHHHHHhhhCCC--CEEEecCcc--------ccceEEEec--CCc-----------------------------c-
Q 048746 284 TL--DAEKFSDYFGSA--PIFKIPGRR--------YPVEIHYTK--APE-----------------------------A- 319 (755)
Q Consensus 284 T~--~~~~l~~~~~~~--~~~~~~~~~--------~~v~~~~~~--~~~-----------------------------~- 319 (755)
|+ +.+.+...+.+- ..+.+..+. .+.++.+.. .+. .
T Consensus 171 TP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~ 250 (773)
T PRK13766 171 SPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISP 250 (773)
T ss_pred CCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCC
Confidence 98 333333322210 000100000 000000000 000 0
Q ss_pred -----c-------------------------------------------------hHH----------------------
Q 048746 320 -----D-------------------------------------------------YID---------------------- 323 (755)
Q Consensus 320 -----~-------------------------------------------------~~~---------------------- 323 (755)
+ |+.
T Consensus 251 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~ 330 (773)
T PRK13766 251 DVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDP 330 (773)
T ss_pred CcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCH
Confidence 0 000
Q ss_pred ----------------HHHHHHHHHH----hhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCC---
Q 048746 324 ----------------AAIVTVLQIH----VTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYAN--- 380 (755)
Q Consensus 324 ----------------~~~~~~~~~~----~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~--- 380 (755)
..+..+..+. ...+++++||||+++..++.+.+.|...+ +.+..+||.
T Consensus 331 ~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~---------~~~~~~~g~~~~ 401 (773)
T PRK13766 331 RFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEG---------IKAVRFVGQASK 401 (773)
T ss_pred HHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCC---------CceEEEEccccc
Confidence 0000111111 11456899999999999999999996633 445566664
Q ss_pred -----CCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcc
Q 048746 381 -----LPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGR 455 (755)
Q Consensus 381 -----l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GR 455 (755)
|++.+|..+++.|++|..+|||||+++++|+|+|++++||+|+. |.+...|+||+||
T Consensus 402 ~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~------------------~~s~~r~iQR~GR 463 (773)
T PRK13766 402 DGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEP------------------VPSEIRSIQRKGR 463 (773)
T ss_pred cccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999 8999999999999
Q ss_pred cCCCCCCEEEEeccCccc
Q 048746 456 SGRTGPGKCFRLYTLHNY 473 (755)
Q Consensus 456 aGR~g~G~~~~l~~~~~~ 473 (755)
+||.++|.+|.|++++..
T Consensus 464 ~gR~~~~~v~~l~~~~t~ 481 (773)
T PRK13766 464 TGRQEEGRVVVLIAKGTR 481 (773)
T ss_pred cCcCCCCEEEEEEeCCCh
Confidence 999999999999987654
No 78
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=9.1e-30 Score=275.43 Aligned_cols=327 Identities=17% Similarity=0.218 Sum_probs=244.4
Q ss_pred hcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccE
Q 048746 127 RKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHE 206 (755)
Q Consensus 127 ~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~ 206 (755)
-+.+-+.|+|..++.++.+++.|+++|-|.+|||..+..++... +..+.+|+++.|-++|.+|-++.+..+++ .+|..
T Consensus 125 ~YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~s-Lr~kQRVIYTSPIKALSNQKYREl~~EF~-DVGLM 202 (1041)
T KOG0948|consen 125 TYPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMS-LREKQRVIYTSPIKALSNQKYRELLEEFK-DVGLM 202 (1041)
T ss_pred CCCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHH-HHhcCeEEeeChhhhhcchhHHHHHHHhc-cccee
Confidence 35666889999999999999999999999999996665555444 34456999999999999999999999987 35555
Q ss_pred EeeeeeccccCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 207 VGYSIRFEDCTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 207 vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
.| +-..++.+..+|||.++|..+|-.+. -+..+.+||+||+| .+-+.+-..-.-..+.-.+++.+.+++|||+
T Consensus 203 TG-----DVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH-YMRDkERGVVWEETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 203 TG-----DVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH-YMRDKERGVVWEETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred ec-----ceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh-hccccccceeeeeeEEeccccceEEEEeccC
Confidence 55 44566788899999999999886554 68899999999999 2222221111112233357789999999999
Q ss_pred -CHHHHHhhhC-----CCCEEEecCccccceEEEecCCc----------cchHHHH------------------------
Q 048746 286 -DAEKFSDYFG-----SAPIFKIPGRRYPVEIHYTKAPE----------ADYIDAA------------------------ 325 (755)
Q Consensus 286 -~~~~l~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~----------~~~~~~~------------------------ 325 (755)
|+..|++|.. .|.++...-|+.|++.+..+... .++.+..
T Consensus 277 PNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~ 356 (1041)
T KOG0948|consen 277 PNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKG 356 (1041)
T ss_pred CCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccccccc
Confidence 8889999963 46778888888898877443111 1111111
Q ss_pred --------------HHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcc------------------cC---CCCC
Q 048746 326 --------------IVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRG------------------LG---SKIA 370 (755)
Q Consensus 326 --------------~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~------------------~~---~~~~ 370 (755)
+..++.........++|||+-++++|+..+-.+.+.--. +. .+++
T Consensus 357 ~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LP 436 (1041)
T KOG0948|consen 357 RKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELP 436 (1041)
T ss_pred ccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccch
Confidence 112222222233468999999999999999777553210 01 1111
Q ss_pred c---------eEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccc
Q 048746 371 E---------LIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLV 441 (755)
Q Consensus 371 ~---------~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~ 441 (755)
. -.+..+||||-+--++-|.-.|.+|-.++|+||.+.+.|+|.|+-++|+ ...+.||...-
T Consensus 437 qie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF----T~~rKfDG~~f------ 506 (1041)
T KOG0948|consen 437 QIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF----TAVRKFDGKKF------ 506 (1041)
T ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE----eeccccCCcce------
Confidence 1 1255689999999999999999999999999999999999999888887 66677776653
Q ss_pred cccCHHhHHhhhcccCCCC---CCEEEEeccCc
Q 048746 442 HPISKASAMQRAGRSGRTG---PGKCFRLYTLH 471 (755)
Q Consensus 442 ~p~s~~~~~QR~GRaGR~g---~G~~~~l~~~~ 471 (755)
.|+|--+|+||.|||||.| .|.|+.+..+.
T Consensus 507 RwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 507 RWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred eeecccceEEecccccccCCCCCceEEEEecCc
Confidence 3999999999999999999 59999999864
No 79
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.7e-28 Score=274.20 Aligned_cols=314 Identities=21% Similarity=0.149 Sum_probs=206.3
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHH
Q 048746 121 EMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQE 198 (755)
Q Consensus 121 ~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~ 198 (755)
+.....-+..| +++|...++.+..|+ |+.+.||+||| +.+|.+... . .+..++|++||++||.|.++.+...
T Consensus 94 Ea~~R~lg~~p-~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~a--l-~G~~v~VvTptreLA~qdae~~~~l 167 (656)
T PRK12898 94 EASGRVLGQRH-FDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAA--L-AGLPVHVITVNDYLAERDAELMRPL 167 (656)
T ss_pred HHHHHHhCCCC-ChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHh--h-cCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 34444556677 999999999999998 99999999999 455555432 2 3568999999999999999888764
Q ss_pred h---CCccccEEeeeeeccccCCCCceEEEeCcHHH-HHHHhCC--------------------------CCCCCCCceE
Q 048746 199 M---GVKLGHEVGYSIRFEDCTSEKTILKYMTDGML-LREILSE--------------------------PNLESYSVLM 248 (755)
Q Consensus 199 ~---~~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~L-l~~l~~~--------------------------~~l~~~~~vI 248 (755)
+ |..++..+|............++|+|+|..-| .+.|... .....+.+.|
T Consensus 168 ~~~lGlsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aI 247 (656)
T PRK12898 168 YEALGLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAI 247 (656)
T ss_pred HhhcCCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeE
Confidence 3 44444444421111112234689999998655 3333211 1245678899
Q ss_pred eecccc------cC-------C--c--cchHHHHHHHHH-----------------------------------------
Q 048746 249 VDEAHE------RT-------L--S--TDILFGLLKDLI----------------------------------------- 270 (755)
Q Consensus 249 iDEaHe------r~-------~--~--~d~~~~~l~~~~----------------------------------------- 270 (755)
|||||- |+ . . .++.......+.
T Consensus 248 vDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~ 327 (656)
T PRK12898 248 VDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGA 327 (656)
T ss_pred eecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccc
Confidence 999991 00 0 0 001000000000
Q ss_pred -----------h-----cC------------------------------------------------------------C
Q 048746 271 -----------K-----FR------------------------------------------------------------S 274 (755)
Q Consensus 271 -----------~-----~~------------------------------------------------------------~ 274 (755)
+ .+ -
T Consensus 328 ~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~ 407 (656)
T PRK12898 328 VRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRR 407 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHh
Confidence 0 00 0
Q ss_pred CcEEEEeccCCC--HHHHHhhhCCCCEEEecCccccc---eEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q 048746 275 DLKLLISSATLD--AEKFSDYFGSAPIFKIPGRRYPV---EIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQE 349 (755)
Q Consensus 275 ~~~~il~SAT~~--~~~l~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~ 349 (755)
-.++.+||||.. .+.|.+.++-.+ +.+|...... ...+......++.......+...+. .+.++||||+|++
T Consensus 408 Y~kl~GmTGTa~~~~~El~~~y~l~v-v~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~--~~~pvLIft~t~~ 484 (656)
T PRK12898 408 YLRLAGMTGTAREVAGELWSVYGLPV-VRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHA--QGRPVLVGTRSVA 484 (656)
T ss_pred hHHHhcccCcChHHHHHHHHHHCCCe-EEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHH
Confidence 036778888883 345666666543 4444332111 0111222233344433333333222 3568999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCC---Cee-----EEEe
Q 048746 350 EIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTID---GIK-----YVID 421 (755)
Q Consensus 350 ~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip---~v~-----~VId 421 (755)
.++.++..|.+. ++.+..+||.++..++..+...+ +...|+||||+|+||+||+ +|. +||+
T Consensus 485 ~se~L~~~L~~~---------gi~~~~Lhg~~~~rE~~ii~~ag--~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~ 553 (656)
T PRK12898 485 ASERLSALLREA---------GLPHQVLNAKQDAEEAAIVARAG--QRGRITVATNMAGRGTDIKLEPGVAARGGLHVIL 553 (656)
T ss_pred HHHHHHHHHHHC---------CCCEEEeeCCcHHHHHHHHHHcC--CCCcEEEEccchhcccCcCCccchhhcCCCEEEE
Confidence 999999999884 37888999997766655555444 4456999999999999999 776 9999
Q ss_pred CCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCcc
Q 048746 422 PGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHN 472 (755)
Q Consensus 422 ~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~ 472 (755)
+++ |.|...|.||+|||||.| +|.|+.+++.++
T Consensus 554 ~d~------------------P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 554 TER------------------HDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred cCC------------------CCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 999 999999999999999999 699999998754
No 80
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=5.2e-28 Score=279.31 Aligned_cols=327 Identities=19% Similarity=0.208 Sum_probs=240.5
Q ss_pred cCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCc---cc
Q 048746 128 KTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVK---LG 204 (755)
Q Consensus 128 ~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~---~g 204 (755)
+...+.++|++++.++..+..|+++||||||||.+.-.++... ...+.+++++.|.++|.+|.++.+...+|.- +|
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~a-l~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vG 194 (1041)
T COG4581 116 YPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALA-LRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVG 194 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHH-HHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhcc
Confidence 4455679999999999999999999999999996666665554 3445679999999999999999999998854 45
Q ss_pred cEEeeeeeccccCCCCceEEEeCcHHHHHHHhCC-CCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEecc
Q 048746 205 HEVGYSIRFEDCTSEKTILKYMTDGMLLREILSE-PNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSA 283 (755)
Q Consensus 205 ~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~-~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SA 283 (755)
...| +...++.+.++|||.++|-.++..+ ..+..+..||+||+| -+-+.+-....-..++..+.++++|++||
T Consensus 195 L~TG-----Dv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvH-yi~D~eRG~VWEE~Ii~lP~~v~~v~LSA 268 (1041)
T COG4581 195 LMTG-----DVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVH-YIGDRERGVVWEEVIILLPDHVRFVFLSA 268 (1041)
T ss_pred ceec-----ceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeee-eccccccchhHHHHHHhcCCCCcEEEEeC
Confidence 4444 5566788999999999999988666 589999999999999 33333322222334455677889999999
Q ss_pred CC-CHHHHHhhhC-----CCCEEEecCccccceEEEecCCc--------cchHHH----HH-------------------
Q 048746 284 TL-DAEKFSDYFG-----SAPIFKIPGRRYPVEIHYTKAPE--------ADYIDA----AI------------------- 326 (755)
Q Consensus 284 T~-~~~~l~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~----~~------------------- 326 (755)
|+ |++.|+.|++ .+.++....|+.|++.++..... .+.... +.
T Consensus 269 Tv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 348 (1041)
T COG4581 269 TVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVG 348 (1041)
T ss_pred CCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccc
Confidence 99 9999999997 34456667788888888755310 000000 00
Q ss_pred -------------------HHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHh-------------------hcccCCC
Q 048746 327 -------------------VTVLQIHVTQSPGDILVFLTGQEEIETADEILKHR-------------------TRGLGSK 368 (755)
Q Consensus 327 -------------------~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~-------------------~~~~~~~ 368 (755)
..++........-++++|+-++..|+..+..+... ...+..+
T Consensus 349 ~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~e 428 (1041)
T COG4581 349 RYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEE 428 (1041)
T ss_pred cccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChh
Confidence 01112122223458999999999999888776521 0111111
Q ss_pred CCce-------------EEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCC
Q 048746 369 IAEL-------------IICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTG 435 (755)
Q Consensus 369 ~~~~-------------~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~ 435 (755)
..++ .+..+|+||-+..+..+...|..|-++|++||.+++.|+|.|.-++|+ .....||...
T Consensus 429 d~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~----~~l~K~dG~~- 503 (1041)
T COG4581 429 DRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF----TSLSKFDGNG- 503 (1041)
T ss_pred hhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee----eeeEEecCCc-
Confidence 1111 134579999999999999999999999999999999999999655555 4445555332
Q ss_pred cccccccccCHHhHHhhhcccCCCC---CCEEEEeccCc
Q 048746 436 MESLLVHPISKASAMQRAGRSGRTG---PGKCFRLYTLH 471 (755)
Q Consensus 436 ~~~l~~~p~s~~~~~QR~GRaGR~g---~G~~~~l~~~~ 471 (755)
..+.+..+|.|+.|||||.| .|.++.+.++.
T Consensus 504 -----~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 504 -----HRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred -----eeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 22899999999999999999 59999886644
No 81
>PRK14701 reverse gyrase; Provisional
Probab=99.96 E-value=4.5e-28 Score=298.26 Aligned_cols=308 Identities=16% Similarity=0.125 Sum_probs=200.7
Q ss_pred HhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhc-cHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCcc-
Q 048746 126 ERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTT-QIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKL- 203 (755)
Q Consensus 126 ~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~-~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~- 203 (755)
.++ .| +++|.++++.+.++++++++||||||||+ .++..+... .++.+++|++|||+|+.|++.++.... ...
T Consensus 76 ~G~-~p-t~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~--~~g~~aLVl~PTreLa~Qi~~~l~~l~-~~~~ 150 (1638)
T PRK14701 76 TGF-EF-WSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA--LKGKKCYIILPTTLLVKQTVEKIESFC-EKAN 150 (1638)
T ss_pred hCC-CC-CHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH--hcCCeEEEEECHHHHHHHHHHHHHHHH-hhcC
Confidence 355 46 99999999999999999999999999995 233332221 235589999999999999999887743 222
Q ss_pred -ccEEeeeeeccc----------cCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCc-----------cch
Q 048746 204 -GHEVGYSIRFED----------CTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLS-----------TDI 261 (755)
Q Consensus 204 -g~~vg~~~~~~~----------~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~-----------~d~ 261 (755)
+..+.+...... ......+|+|+|||+|.+.+.... ..++++||||||| +++. .+|
T Consensus 151 ~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~-~~~i~~iVVDEAD-~ml~~~knid~~L~llGF 228 (1638)
T PRK14701 151 LDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK-HLKFDFIFVDDVD-AFLKASKNIDRSLQLLGF 228 (1638)
T ss_pred CceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh-hCCCCEEEEECce-eccccccccchhhhcCCC
Confidence 222221111110 112357999999999987764322 2679999999999 5543 355
Q ss_pred HHHHHH----HHH----------------------hcCCCcE-EEEeccCCCH-HHHHhhhCCCCEEEecCcc---ccce
Q 048746 262 LFGLLK----DLI----------------------KFRSDLK-LLISSATLDA-EKFSDYFGSAPIFKIPGRR---YPVE 310 (755)
Q Consensus 262 ~~~~l~----~~~----------------------~~~~~~~-~il~SAT~~~-~~l~~~~~~~~~~~~~~~~---~~v~ 310 (755)
...+.. .+. ..++..+ ++++|||++. .....+|...-.+.+.... ..+.
T Consensus 229 ~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~ 308 (1638)
T PRK14701 229 YEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRSALRNIV 308 (1638)
T ss_pred hHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCCcE
Confidence 544433 110 1123344 6779999964 3444555433233333221 2345
Q ss_pred EEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHH---HHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHH
Q 048746 311 IHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEE---IETADEILKHRTRGLGSKIAELIICPIYANLPTELQA 387 (755)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 387 (755)
..|......+ .. .++.+.... +..+||||++++. ++.+++.|.+. ++.+..+||+ |.
T Consensus 309 ~~yi~~~~~~-k~----~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~---------Gi~a~~~h~~-----R~ 368 (1638)
T PRK14701 309 DVYLNPEKII-KE----HVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED---------GFKIELVSAK-----NK 368 (1638)
T ss_pred EEEEECCHHH-HH----HHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC---------CCeEEEecch-----HH
Confidence 5555432222 12 233333333 4678999999876 48889999874 4889999995 88
Q ss_pred HHhCCCCCCCcEEEEeC----CcccccCcCCC-eeEEEeCCCccccc----ccCCCCcccccccccCHHhHHhhhcccCC
Q 048746 388 KIFEPTPEGARKVVLAT----NIAETSLTIDG-IKYVIDPGFSKVKS----YNPRTGMESLLVHPISKASAMQRAGRSGR 458 (755)
Q Consensus 388 ~i~~~f~~g~~~vlvaT----~i~~~Gidip~-v~~VId~g~~k~~~----~~~~~~~~~l~~~p~s~~~~~QR~GRaGR 458 (755)
.+++.|++|+.+||||| ++++||||+|+ |+|||++|+.|... |...... + .. .....++.|||||
T Consensus 369 ~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~--~---~~-~~~~~~~~~~a~~ 442 (1638)
T PRK14701 369 KGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR--I---LG-LLSEILKIEEELK 442 (1638)
T ss_pred HHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh--h---hc-chHHHHHhhhhcc
Confidence 99999999999999999 59999999999 99999999944221 1111100 0 00 1234556699999
Q ss_pred CC-CCEEEE
Q 048746 459 TG-PGKCFR 466 (755)
Q Consensus 459 ~g-~G~~~~ 466 (755)
.| ++.|+.
T Consensus 443 ~g~~~~~~~ 451 (1638)
T PRK14701 443 EGIPIEGVL 451 (1638)
T ss_pred cCCcchhHH
Confidence 99 566643
No 82
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.96 E-value=3.3e-27 Score=268.28 Aligned_cols=309 Identities=21% Similarity=0.272 Sum_probs=199.5
Q ss_pred hcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHH---hCC
Q 048746 127 RKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQE---MGV 201 (755)
Q Consensus 127 ~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~---~~~ 201 (755)
+..+-++|++.+++.++.-++..|+.++||+||| +.+|.++.. . .+..++|++|+++||.|.++.+... +|.
T Consensus 64 ~R~lglrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~a--L-~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 64 KRVLGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNA--L-TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred HhhcCCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHh--h-cCCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 4456667777778877666666899999999999 556644432 2 3457999999999999999877553 355
Q ss_pred ccccEEeeee--ecc---ccCCCCceEEEeCcHHH-HHHHhC-------CCCCCCCCceEeecccccCCc----------
Q 048746 202 KLGHEVGYSI--RFE---DCTSEKTILKYMTDGML-LREILS-------EPNLESYSVLMVDEAHERTLS---------- 258 (755)
Q Consensus 202 ~~g~~vg~~~--~~~---~~~~~~~~I~v~T~g~L-l~~l~~-------~~~l~~~~~vIiDEaHer~~~---------- 258 (755)
.++..++... ... ......++|+|+||+.| .+.|.. ...+.++.++||||||.-.++
T Consensus 141 sv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg 220 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISG 220 (762)
T ss_pred cEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeC
Confidence 4443322100 000 11124689999999999 444421 234788999999999921111
Q ss_pred -----cchHHHHHHHHHhcCC--------C--------------------------------------------------
Q 048746 259 -----TDILFGLLKDLIKFRS--------D-------------------------------------------------- 275 (755)
Q Consensus 259 -----~d~~~~~l~~~~~~~~--------~-------------------------------------------------- 275 (755)
+.+.......+....+ .
T Consensus 221 ~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~d 300 (762)
T TIGR03714 221 APRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKD 300 (762)
T ss_pred CCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 0111111111111111 0
Q ss_pred -----------------------------------------------------------cEEEEeccCC--CHHHHHhhh
Q 048746 276 -----------------------------------------------------------LKLLISSATL--DAEKFSDYF 294 (755)
Q Consensus 276 -----------------------------------------------------------~~~il~SAT~--~~~~l~~~~ 294 (755)
.++.+||.|. ..+.|.+.+
T Consensus 301 YiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY 380 (762)
T TIGR03714 301 YVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETY 380 (762)
T ss_pred eEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHh
Confidence 1334444443 112233332
Q ss_pred CCCCEEEecCccccce-----EEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCC
Q 048746 295 GSAPIFKIPGRRYPVE-----IHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKI 369 (755)
Q Consensus 295 ~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~ 369 (755)
+ -+++.+|....... ..|. ....+..+.+..+.+.+ ..+.++||||++++.++.++..|.+.
T Consensus 381 ~-l~v~~IPt~kp~~r~d~~d~i~~--~~~~K~~ai~~~i~~~~--~~~~pvLIft~s~~~se~ls~~L~~~-------- 447 (762)
T TIGR03714 381 S-LSVVKIPTNKPIIRIDYPDKIYA--TLPEKLMATLEDVKEYH--ETGQPVLLITGSVEMSEIYSELLLRE-------- 447 (762)
T ss_pred C-CCEEEcCCCCCeeeeeCCCeEEE--CHHHHHHHHHHHHHHHh--hCCCCEEEEECcHHHHHHHHHHHHHC--------
Confidence 2 23333332211000 0111 11223333344444433 34679999999999999999999884
Q ss_pred CceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCC---------CeeEEEeCCCcccccccCCCCccccc
Q 048746 370 AELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTID---------GIKYVIDPGFSKVKSYNPRTGMESLL 440 (755)
Q Consensus 370 ~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip---------~v~~VId~g~~k~~~~~~~~~~~~l~ 440 (755)
++.+..+||.+.+.++..+...++.| .|+||||+|+||+||+ ++.+|++++.
T Consensus 448 -gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~---------------- 508 (762)
T TIGR03714 448 -GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERM---------------- 508 (762)
T ss_pred -CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCC----------------
Confidence 37788899999999999998888777 7999999999999999 9999999998
Q ss_pred ccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 441 VHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 441 ~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
|....+ .||+|||||.| +|.++.+++.++.
T Consensus 509 --ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 509 --ENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred --CCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 877777 99999999999 6999999987654
No 83
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2e-27 Score=272.67 Aligned_cols=312 Identities=21% Similarity=0.237 Sum_probs=201.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHh
Q 048746 122 MLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEM 199 (755)
Q Consensus 122 ~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~ 199 (755)
...+.-+..| +++|......+..|+ |+.+.||+||| +.+|.++... .+..+.|+.|+++||.|.++.+...+
T Consensus 70 a~~R~~g~~p-~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al---~G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 70 AAKRVLGMRP-YDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL---EGKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred HHHHHhCCCC-chHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH---cCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 3344446677 888888887777776 99999999999 4555553332 35689999999999999998876643
Q ss_pred ---CCccccEEeeee-eccccCCCCceEEEeCcHHH-HHHHhCC-------CCCCCCCceEeecccccCC-cc-------
Q 048746 200 ---GVKLGHEVGYSI-RFEDCTSEKTILKYMTDGML-LREILSE-------PNLESYSVLMVDEAHERTL-ST------- 259 (755)
Q Consensus 200 ---~~~~g~~vg~~~-~~~~~~~~~~~I~v~T~g~L-l~~l~~~-------~~l~~~~~vIiDEaHer~~-~~------- 259 (755)
|..+|..+|... ..+......++|+|+||+.| .+.|... ..+..+.++|||||| +++ +.
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaD-siLiDea~tplii 222 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEID-SILLDEAQTPLII 222 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccc-cceeccCCCceee
Confidence 444444433211 11112224689999999988 3433221 256788999999999 221 10
Q ss_pred --------chHHHHHHHHHhcCC--------Cc-----------------------------------------------
Q 048746 260 --------DILFGLLKDLIKFRS--------DL----------------------------------------------- 276 (755)
Q Consensus 260 --------d~~~~~l~~~~~~~~--------~~----------------------------------------------- 276 (755)
.........+....+ +.
T Consensus 223 sg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d 302 (790)
T PRK09200 223 SGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRD 302 (790)
T ss_pred eCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcC
Confidence 011111011111100 11
Q ss_pred --------------------------------------------------------------EEEEeccCC--CHHHHHh
Q 048746 277 --------------------------------------------------------------KLLISSATL--DAEKFSD 292 (755)
Q Consensus 277 --------------------------------------------------------------~~il~SAT~--~~~~l~~ 292 (755)
++.+||.|. ..+.|.+
T Consensus 303 ~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~ 382 (790)
T PRK09200 303 VDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFE 382 (790)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHH
Confidence 233333333 1112222
Q ss_pred hhCCCCEEEecCccccceEE-E---ecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCC
Q 048746 293 YFGSAPIFKIPGRRYPVEIH-Y---TKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSK 368 (755)
Q Consensus 293 ~~~~~~~~~~~~~~~~v~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~ 368 (755)
.++ -+++.+|... |+.-. + ......+.....+..+...+ ..+.++||||+|++.++.++..|.+.
T Consensus 383 ~Y~-l~v~~IPt~k-p~~r~d~~~~i~~~~~~K~~al~~~i~~~~--~~~~pvLIf~~t~~~se~l~~~L~~~------- 451 (790)
T PRK09200 383 VYN-MEVVQIPTNR-PIIRIDYPDKVFVTLDEKYKAVIEEVKERH--ETGRPVLIGTGSIEQSETFSKLLDEA------- 451 (790)
T ss_pred HhC-CcEEECCCCC-CcccccCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC-------
Confidence 221 2233333221 11000 0 00011222333333333322 24689999999999999999999884
Q ss_pred CCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcC---CCee-----EEEeCCCcccccccCCCCccccc
Q 048746 369 IAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTI---DGIK-----YVIDPGFSKVKSYNPRTGMESLL 440 (755)
Q Consensus 369 ~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidi---p~v~-----~VId~g~~k~~~~~~~~~~~~l~ 440 (755)
++.+..+||.+.+.++..+...+..| +|+||||+|+||+|| |+|. +||++++
T Consensus 452 --gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~---------------- 511 (790)
T PRK09200 452 --GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTER---------------- 511 (790)
T ss_pred --CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccC----------------
Confidence 37888999999999998888888776 799999999999999 7999 9999999
Q ss_pred ccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 441 VHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 441 ~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
|.|...|.||+|||||.| +|.++.+++.++.
T Consensus 512 --p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 512 --MESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred --CCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 999999999999999999 6999999987654
No 84
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=2e-27 Score=270.15 Aligned_cols=301 Identities=15% Similarity=0.143 Sum_probs=197.9
Q ss_pred CCChHHHHHHHHHHHc-C--CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccE
Q 048746 130 LPIYPYRDELLQAVNE-Y--QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHE 206 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~-~--~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~ 206 (755)
..++++|.+++..+.. + +..+++.|||+|||.+...++... +.++||++|+.+|+.|..+.+.+......+..
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I 329 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQI 329 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceE
Confidence 4579999999999764 3 368999999999996555444332 35799999999999999999988655433322
Q ss_pred EeeeeeccccCCCCceEEEeCcHHHHHHHhCC-------CCC--CCCCceEeecccccCCccchHHHHHHHHHhcCCCcE
Q 048746 207 VGYSIRFEDCTSEKTILKYMTDGMLLREILSE-------PNL--ESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLK 277 (755)
Q Consensus 207 vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~-------~~l--~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~ 277 (755)
..+.-...........|+|+|..++....... ..+ ..+++||+|||| +.. ... .+.+........
T Consensus 330 ~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH-~lp-A~~----fr~il~~l~a~~ 403 (732)
T TIGR00603 330 CRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVH-VVP-AAM----FRRVLTIVQAHC 403 (732)
T ss_pred EEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccc-ccc-HHH----HHHHHHhcCcCc
Confidence 22211111111234679999999885321110 112 468899999999 443 222 222222223445
Q ss_pred EEEeccCCC--HH---HHHhhhCCCCEEEec-------CccccceEE--EecCCccc---hHH-----------------
Q 048746 278 LLISSATLD--AE---KFSDYFGSAPIFKIP-------GRRYPVEIH--YTKAPEAD---YID----------------- 323 (755)
Q Consensus 278 ~il~SAT~~--~~---~l~~~~~~~~~~~~~-------~~~~~v~~~--~~~~~~~~---~~~----------------- 323 (755)
.+++|||+. .+ .+..+++ ..++..+ |..-+++.. +.+..... |+.
T Consensus 404 RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~ 482 (732)
T TIGR00603 404 KLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKF 482 (732)
T ss_pred EEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHH
Confidence 799999992 11 2333333 3333332 222233221 12211111 110
Q ss_pred HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCC-CcEEEE
Q 048746 324 AAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEG-ARKVVL 402 (755)
Q Consensus 324 ~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g-~~~vlv 402 (755)
..+..++..|. ..+.++||||.+...+..++..|. +..+||++++.+|.++++.|+.| ..++||
T Consensus 483 ~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L~--------------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv 547 (732)
T TIGR00603 483 RACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKLG--------------KPFIYGPTSQQERMQILQNFQHNPKVNTIF 547 (732)
T ss_pred HHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHcC--------------CceEECCCCHHHHHHHHHHHHhCCCccEEE
Confidence 11112333332 356799999999988888877652 22489999999999999999865 789999
Q ss_pred eCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccc-cCHHhHHhhhcccCCCCC-CEE-------EEeccCccc
Q 048746 403 ATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHP-ISKASAMQRAGRSGRTGP-GKC-------FRLYTLHNY 473 (755)
Q Consensus 403 aT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p-~s~~~~~QR~GRaGR~g~-G~~-------~~l~~~~~~ 473 (755)
+|+++.+|||+|++++||+++. | .|...|+||+||++|.++ |.+ |.|++++..
T Consensus 548 ~SkVgdeGIDlP~a~vvI~~s~------------------~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 548 LSKVGDTSIDLPEANVLIQISS------------------HYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred EecccccccCCCCCCEEEEeCC------------------CCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999999999999999998776 6 599999999999999996 444 888887654
Q ss_pred c
Q 048746 474 H 474 (755)
Q Consensus 474 ~ 474 (755)
+
T Consensus 610 E 610 (732)
T TIGR00603 610 E 610 (732)
T ss_pred H
Confidence 3
No 85
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=6.4e-28 Score=267.28 Aligned_cols=322 Identities=15% Similarity=0.188 Sum_probs=235.3
Q ss_pred hcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccE
Q 048746 127 RKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHE 206 (755)
Q Consensus 127 ~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~ 206 (755)
.+.+.+..+|++++.++..|..|+|.|+|.+|||..+..++... .....+.+|+.|-++|.+|-++.++..+|. +|..
T Consensus 293 ~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q~h~TR~iYTSPIKALSNQKfRDFk~tF~D-vgLl 370 (1248)
T KOG0947|consen 293 IYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-QKHMTRTIYTSPIKALSNQKFRDFKETFGD-VGLL 370 (1248)
T ss_pred hCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-HhhccceEecchhhhhccchHHHHHHhccc-ccee
Confidence 45666789999999999999999999999999996665554433 334569999999999999999999998874 3444
Q ss_pred EeeeeeccccCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeeccc-----ccCCccchHHHHHHHHHhcCCCcEEEE
Q 048746 207 VGYSIRFEDCTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAH-----ERTLSTDILFGLLKDLIKFRSDLKLLI 280 (755)
Q Consensus 207 vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaH-----er~~~~d~~~~~l~~~~~~~~~~~~il 280 (755)
.| +....+.+.+++||.++|..+|-+.. .++++.+||+||+| ||+.-- -..++-+++++++|+
T Consensus 371 TG-----DvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVW------EEViIMlP~HV~~Il 439 (1248)
T KOG0947|consen 371 TG-----DVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVW------EEVIIMLPRHVNFIL 439 (1248)
T ss_pred ec-----ceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccc------eeeeeeccccceEEE
Confidence 44 66777889999999999999986554 67899999999999 444211 122334678899999
Q ss_pred eccCC-CHHHHHhhhCCC---C--EEEecCccccceEEEecCCcc-----------------------------------
Q 048746 281 SSATL-DAEKFSDYFGSA---P--IFKIPGRRYPVEIHYTKAPEA----------------------------------- 319 (755)
Q Consensus 281 ~SAT~-~~~~l~~~~~~~---~--~~~~~~~~~~v~~~~~~~~~~----------------------------------- 319 (755)
+|||+ |...|++|.|.. . ++....|+.|++.++....+.
T Consensus 440 LSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~ 519 (1248)
T KOG0947|consen 440 LSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSD 519 (1248)
T ss_pred EeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccc
Confidence 99999 888999999853 2 333445677777664221000
Q ss_pred ----------------------------chHH-HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhc-------
Q 048746 320 ----------------------------DYID-AAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTR------- 363 (755)
Q Consensus 320 ----------------------------~~~~-~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~------- 363 (755)
+... ..+..++.......--+++|||-+++.|++.++.|...--
T Consensus 520 ~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKs 599 (1248)
T KOG0947|consen 520 ARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKS 599 (1248)
T ss_pred ccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHH
Confidence 0000 0122222223333346899999999999999988865321
Q ss_pred --------------ccCCCCCc---------eEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEE
Q 048746 364 --------------GLGSKIAE---------LIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVI 420 (755)
Q Consensus 364 --------------~~~~~~~~---------~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VI 420 (755)
+....++. -.+..+|||+-+--++-|...|..|-.|||+||.++++|||.|.-++|+
T Consensus 600 eV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF 679 (1248)
T KOG0947|consen 600 EVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVF 679 (1248)
T ss_pred HHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEe
Confidence 11111111 1256689999999999999999999999999999999999999888887
Q ss_pred eCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC---CCEEEEeccCc
Q 048746 421 DPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG---PGKCFRLYTLH 471 (755)
Q Consensus 421 d~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g---~G~~~~l~~~~ 471 (755)
++=. ..|... ..-..+.+|.||+|||||.| .|.++.+....
T Consensus 680 ~Sl~----KhDG~e------fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 680 SSLR----KHDGNE------FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred eehh----hccCcc------eeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 5432 222221 12577889999999999999 59988887754
No 86
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=6.1e-29 Score=238.22 Aligned_cols=299 Identities=16% Similarity=0.163 Sum_probs=213.6
Q ss_pred cCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhccc-CC-CccccCccHHH
Q 048746 109 ELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYT-KQ-GKVGCTQPRRV 186 (755)
Q Consensus 109 ~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~-~~-~~ilv~~P~r~ 186 (755)
-|.++.+.++++++|-..+++-| ...|.++||...-|-++++.|..|-|||......-+...-. .+ ..++|++.||+
T Consensus 43 gfrdfllkpellraivdcgfehp-sevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtre 121 (387)
T KOG0329|consen 43 GFRDFLLKPELLRAIVDCGFEHP-SEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 121 (387)
T ss_pred chhhhhcCHHHHHHHHhccCCCc-hHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHH
Confidence 47788889999999999999999 99999999998889999999999999994333332222112 22 37899999999
Q ss_pred HHHHHHH---HHHHHh-CCccccEEee-eeeccc-cCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCCcc
Q 048746 187 AAMSVAA---RVSQEM-GVKLGHEVGY-SIRFED-CTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTLST 259 (755)
Q Consensus 187 la~q~a~---~~~~~~-~~~~g~~vg~-~~~~~~-~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~~~ 259 (755)
||.|+.+ |+++.+ +.++....|. .+.-+. ......+|+++|||+++.+.++.. .++++.+.|+|||+...-..
T Consensus 122 lafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~l 201 (387)
T KOG0329|consen 122 LAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQL 201 (387)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHH
Confidence 9999965 455544 3344433342 222211 122367999999999999987765 79999999999999333334
Q ss_pred chHHHHHHHHHhcCCCcEEEEeccCCC--HHHHHhhhCCCCEEEe-cCc----cccceEEEecCCccchHHHHHHHHHHH
Q 048746 260 DILFGLLKDLIKFRSDLKLLISSATLD--AEKFSDYFGSAPIFKI-PGR----RYPVEIHYTKAPEADYIDAAIVTVLQI 332 (755)
Q Consensus 260 d~~~~~l~~~~~~~~~~~~il~SAT~~--~~~l~~~~~~~~~~~~-~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 332 (755)
|....+-.+....+.+.|++++|||+. ...+..-|...|+-.. ... .+.++++|....+....... .++
T Consensus 202 DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl----~dL 277 (387)
T KOG0329|consen 202 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKL----NDL 277 (387)
T ss_pred HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhh----hhh
Confidence 555555555555667899999999994 4456666665554222 211 34566667665544333322 222
Q ss_pred HhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCc
Q 048746 333 HVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLT 412 (755)
Q Consensus 333 ~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gid 412 (755)
.....-.+++||+.+...+. | ..+ +|||++.+||+|
T Consensus 278 Ld~LeFNQVvIFvKsv~Rl~----------------------------------------f---~kr-~vat~lfgrgmd 313 (387)
T KOG0329|consen 278 LDVLEFNQVVIFVKSVQRLS----------------------------------------F---QKR-LVATDLFGRGMD 313 (387)
T ss_pred hhhhhhcceeEeeehhhhhh----------------------------------------h---hhh-hHHhhhhccccC
Confidence 22223467899987754310 2 123 899999999999
Q ss_pred CCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEeccCcccc
Q 048746 413 IDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTLHNYH 474 (755)
Q Consensus 413 ip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~~~~~ 474 (755)
|..|+.|+|||+ |-+..+|.||.|||||.|. |.++.+.+.+...
T Consensus 314 iervNi~~NYdm------------------p~~~DtYlHrv~rAgrfGtkglaitfvs~e~da 358 (387)
T KOG0329|consen 314 IERVNIVFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITFVSDENDA 358 (387)
T ss_pred cccceeeeccCC------------------CCCchHHHHHhhhhhccccccceeehhcchhhH
Confidence 999999999999 9999999999999999995 9999999866543
No 87
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=1.3e-27 Score=278.24 Aligned_cols=320 Identities=18% Similarity=0.201 Sum_probs=230.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHH
Q 048746 119 ALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVS 196 (755)
Q Consensus 119 ~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~ 196 (755)
.+..+...-+.--..+-|.++|.+.+.|+++++..|||+||| ||+|.++.. +..+||.|..+|...+...+.
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~------gitvVISPL~SLm~DQv~~L~ 325 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLG------GVTVVISPLISLMQDQVTHLS 325 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccC------CceEEeccHHHHHHHHHHhhh
Confidence 333444443444567899999999999999999999999999 999998753 378999999999998887774
Q ss_pred HHhCCccccEEeeeee------ccccCC--CCceEEEeCcHHHHHHHh---CCCCCCC---CCceEeecccccCCcc-ch
Q 048746 197 QEMGVKLGHEVGYSIR------FEDCTS--EKTILKYMTDGMLLREIL---SEPNLES---YSVLMVDEAHERTLST-DI 261 (755)
Q Consensus 197 ~~~~~~~g~~vg~~~~------~~~~~~--~~~~I~v~T~g~Ll~~l~---~~~~l~~---~~~vIiDEaHer~~~~-d~ 261 (755)
. .+.+.....+.+.. +..... ...+|+|.||+.+...-. ....+.. +..+||||||+-+-+. ||
T Consensus 326 ~-~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdF 404 (941)
T KOG0351|consen 326 K-KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDF 404 (941)
T ss_pred h-cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccc
Confidence 3 44443322221111 111122 367999999987754211 1112333 7899999999665443 34
Q ss_pred HHHH--HHHHHhcCCCcEEEEeccCCCHH---HHHhhhCCCCEEEecCccccceEEEecCCccchHHHHHHHHHHHHhhC
Q 048746 262 LFGL--LKDLIKFRSDLKLLISSATLDAE---KFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQ 336 (755)
Q Consensus 262 ~~~~--l~~~~~~~~~~~~il~SAT~~~~---~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (755)
...+ +..+....+...+|.+|||.... ++.+-++-...........+-..+|...+..+ .+.....+..+....
T Consensus 405 Rp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~-~~~~~~~~~~~~~~~ 483 (941)
T KOG0351|consen 405 RPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTD-KDALLDILEESKLRH 483 (941)
T ss_pred cHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccC-ccchHHHHHHhhhcC
Confidence 4333 33334456678999999999443 44444442211111222223334443333321 222333444444556
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCe
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGI 416 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v 416 (755)
+.+.+||+|.++.+|+.++..|+..+ +....||+||+..+|..|...|-.++.+|||||=++++|||.|+|
T Consensus 484 ~~~s~IIYC~sr~~ce~vs~~L~~~~---------~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DV 554 (941)
T KOG0351|consen 484 PDQSGIIYCLSRKECEQVSAVLRSLG---------KSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDV 554 (941)
T ss_pred CCCCeEEEeCCcchHHHHHHHHHHhc---------hhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCce
Confidence 67899999999999999999999864 678889999999999999999999999999999999999999999
Q ss_pred eEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 417 KYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 417 ~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
+.||+|++ |.|.+.|.|-+|||||.| +..|..+|...++
T Consensus 555 R~ViH~~l------------------Pks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~ 594 (941)
T KOG0351|consen 555 RFVIHYSL------------------PKSFEGYYQEAGRAGRDGLPSSCVLLYGYADI 594 (941)
T ss_pred eEEEECCC------------------chhHHHHHHhccccCcCCCcceeEEecchhHH
Confidence 99999999 999999999999999999 6999999997765
No 88
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.95 E-value=1.2e-26 Score=262.17 Aligned_cols=310 Identities=21% Similarity=0.208 Sum_probs=204.8
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHh
Q 048746 122 MLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEM 199 (755)
Q Consensus 122 ~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~ 199 (755)
+..+.-+..| +++|......+..|+ |+.++||+||| +.+|.++... .+..+.|++|+++||.|.++.+...+
T Consensus 48 a~~R~lg~~p-~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL---~G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 48 ASKRVLGMRP-FDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNAL---TGKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred HHHHHhCCCc-cchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHH---hCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 3334445556 777777777776665 99999999999 4555544332 24479999999999999998887743
Q ss_pred CCccccEEeeeeecc----ccCCCCceEEEeCcHHH-HHHHhCC-------CCCCCCCceEeecccccCCccc-------
Q 048746 200 GVKLGHEVGYSIRFE----DCTSEKTILKYMTDGML-LREILSE-------PNLESYSVLMVDEAHERTLSTD------- 260 (755)
Q Consensus 200 ~~~~g~~vg~~~~~~----~~~~~~~~I~v~T~g~L-l~~l~~~-------~~l~~~~~vIiDEaHer~~~~d------- 260 (755)
..+|..+|...... ....-.++|+|+||+.| ++.+... ..+.++.++||||+| +.+-.+
T Consensus 122 -~~LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaD-s~LIDeaRtpLii 199 (745)
T TIGR00963 122 -RFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVD-SILIDEARTPLII 199 (745)
T ss_pred -ccCCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHH-HHhHHhhhhHHhh
Confidence 33445555333221 12223579999999999 7777544 257889999999999 222100
Q ss_pred ---------hHHHHHHHHHhcCC--------C------------------------------------------------
Q 048746 261 ---------ILFGLLKDLIKFRS--------D------------------------------------------------ 275 (755)
Q Consensus 261 ---------~~~~~l~~~~~~~~--------~------------------------------------------------ 275 (755)
.............. .
T Consensus 200 sg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d 279 (745)
T TIGR00963 200 SGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKD 279 (745)
T ss_pred cCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 11100000000000 0
Q ss_pred -------------------------------------------------------------cEEEEeccCC--CHHHHHh
Q 048746 276 -------------------------------------------------------------LKLLISSATL--DAEKFSD 292 (755)
Q Consensus 276 -------------------------------------------------------------~~~il~SAT~--~~~~l~~ 292 (755)
.++.+||.|. ..+.|.+
T Consensus 280 ~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~ 359 (745)
T TIGR00963 280 VDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEK 359 (745)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHH
Confidence 1233333333 1122222
Q ss_pred hhCCCCEEEecCccccce-----EEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCC
Q 048746 293 YFGSAPIFKIPGRRYPVE-----IHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGS 367 (755)
Q Consensus 293 ~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~ 367 (755)
.++ .+++.+|....... ..|. ...++..+.+..+...+. .+.++||||++.+.++.++..|.+.+
T Consensus 360 iY~-l~vv~IPtnkp~~R~d~~d~i~~--t~~~k~~ai~~~i~~~~~--~grpvLV~t~si~~se~ls~~L~~~g----- 429 (745)
T TIGR00963 360 IYN-LEVVVVPTNRPVIRKDLSDLVYK--TEEEKWKAVVDEIKERHA--KGQPVLVGTTSVEKSELLSNLLKERG----- 429 (745)
T ss_pred HhC-CCEEEeCCCCCeeeeeCCCeEEc--CHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHcC-----
Confidence 222 22333332211000 0011 112233444444544443 47899999999999999999999853
Q ss_pred CCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCC-------eeEEEeCCCcccccccCCCCccccc
Q 048746 368 KIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDG-------IKYVIDPGFSKVKSYNPRTGMESLL 440 (755)
Q Consensus 368 ~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~-------v~~VId~g~~k~~~~~~~~~~~~l~ 440 (755)
+....+||. +.+|+..+..|+.+...|+||||+|+||+||+. ..+||++++
T Consensus 430 ----i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~---------------- 487 (745)
T TIGR00963 430 ----IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTER---------------- 487 (745)
T ss_pred ----CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCC----------------
Confidence 667789998 888999999999999999999999999999998 459999999
Q ss_pred ccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 441 VHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 441 ~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
|.|...+.||+|||||.| ||.+..+++.++.
T Consensus 488 --p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 488 --HESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred --CCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 999999999999999999 6999999987754
No 89
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.95 E-value=8.4e-27 Score=282.14 Aligned_cols=275 Identities=19% Similarity=0.209 Sum_probs=183.7
Q ss_pred hcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhc-cHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHh---CCc
Q 048746 127 RKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTT-QIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEM---GVK 202 (755)
Q Consensus 127 ~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~-~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~---~~~ 202 (755)
....| +++|..+++.+..|++++++||||||||+ .+|...... ..+.+++|++|||+||.|+++.+.+.. +..
T Consensus 75 ~g~~p-~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~--~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~ 151 (1171)
T TIGR01054 75 VGSEP-WSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLA--KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVG 151 (1171)
T ss_pred cCCCC-cHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCc
Confidence 34456 99999999999999999999999999994 444333222 235689999999999999999887743 222
Q ss_pred cc---cEEeeeeecc-------ccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCc-----------cch
Q 048746 203 LG---HEVGYSIRFE-------DCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLS-----------TDI 261 (755)
Q Consensus 203 ~g---~~vg~~~~~~-------~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~-----------~d~ 261 (755)
.. ...|. .... .......+|+|+||++|.+.+..-.. +++++|||||| +++. .+|
T Consensus 152 ~~~i~~~~Gg-~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~--~~~~iVvDEaD-~~L~~~k~vd~il~llGF 227 (1171)
T TIGR01054 152 TVNIGAYHSR-LPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP--KFDFIFVDDVD-ALLKASKNVDKLLKLLGF 227 (1171)
T ss_pred eeeeeeecCC-CCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC--CCCEEEEeChH-hhhhccccHHHHHHHcCC
Confidence 11 11121 1111 01223589999999999887654221 89999999999 6665 334
Q ss_pred HHHHHHHH-----------------------HhcCCCcE--EEEeccCCCHHHHH-hhhCCCCEEEecCc---cccceEE
Q 048746 262 LFGLLKDL-----------------------IKFRSDLK--LLISSATLDAEKFS-DYFGSAPIFKIPGR---RYPVEIH 312 (755)
Q Consensus 262 ~~~~l~~~-----------------------~~~~~~~~--~il~SAT~~~~~l~-~~~~~~~~~~~~~~---~~~v~~~ 312 (755)
....+..+ ...+...| ++++|||..+.... .+|...-.+.+... ...+...
T Consensus 228 ~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~ 307 (1171)
T TIGR01054 228 SEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDV 307 (1171)
T ss_pred CHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccceEEE
Confidence 32222111 11223333 67789995222222 23332222333222 2245555
Q ss_pred EecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH---HHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHH
Q 048746 313 YTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQ---EEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKI 389 (755)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~---~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i 389 (755)
|..... ... .+..+.... +.++||||+++ +.++.++..|.+. ++.+..+||++++ .+
T Consensus 308 ~~~~~~--~~~----~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~---------g~~a~~lhg~~~~----~~ 367 (1171)
T TIGR01054 308 YVEDED--LKE----TLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH---------GVKAVAYHATKPK----ED 367 (1171)
T ss_pred EEeccc--HHH----HHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC---------CceEEEEeCCCCH----HH
Confidence 553322 122 222222222 46799999999 9999999999874 3788999999973 68
Q ss_pred hCCCCCCCcEEEEe----CCcccccCcCCC-eeEEEeCCCcccc
Q 048746 390 FEPTPEGARKVVLA----TNIAETSLTIDG-IKYVIDPGFSKVK 428 (755)
Q Consensus 390 ~~~f~~g~~~vlva----T~i~~~Gidip~-v~~VId~g~~k~~ 428 (755)
++.|++|+.+|||| ||+++||||+|+ |+|||++|+.+.+
T Consensus 368 l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 368 YEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFK 411 (1171)
T ss_pred HHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEE
Confidence 89999999999999 599999999999 8999999996653
No 90
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=2.2e-27 Score=242.56 Aligned_cols=306 Identities=17% Similarity=0.166 Sum_probs=213.5
Q ss_pred hHHHHHHHHHH-HcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEe-
Q 048746 133 YPYRDELLQAV-NEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVG- 208 (755)
Q Consensus 133 ~~~Q~~~l~~i-~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg- 208 (755)
++.|++++.++ ..+++|.++.|||+||| +|+|.++.+ +..||+.|..+|...+...+.+ +.+++...-.
T Consensus 22 s~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~------gITIV~SPLiALIkDQiDHL~~-LKVp~~SLNSK 94 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHG------GITIVISPLIALIKDQIDHLKR-LKVPCESLNSK 94 (641)
T ss_pred ChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhC------CeEEEehHHHHHHHHHHHHHHh-cCCchhHhcch
Confidence 67799999985 56789999999999999 999988754 3789999999999988877765 3333321111
Q ss_pred --eeeec-----cccCCCCceEEEeCcHHHHH-----HHhCCCCCCCCCceEeecccccCCc-cchHHHHHH--HHHhcC
Q 048746 209 --YSIRF-----EDCTSEKTILKYMTDGMLLR-----EILSEPNLESYSVLMVDEAHERTLS-TDILFGLLK--DLIKFR 273 (755)
Q Consensus 209 --~~~~~-----~~~~~~~~~I~v~T~g~Ll~-----~l~~~~~l~~~~~vIiDEaHer~~~-~d~~~~~l~--~~~~~~ 273 (755)
-.-|. -....+.+.++|.||++... .|..-..-.-++++|+||||.-+.+ .||...+++ .+....
T Consensus 95 lSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~ 174 (641)
T KOG0352|consen 95 LSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVC 174 (641)
T ss_pred hhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhC
Confidence 00000 01233567899999976432 2222123345789999999965533 345555443 344567
Q ss_pred CCcEEEEeccCCCHHHHHhh----hCCCCEEEecCccccceEEEecCCccchHHHHHHHHHHHH-------------hhC
Q 048746 274 SDLKLLISSATLDAEKFSDY----FGSAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIH-------------VTQ 336 (755)
Q Consensus 274 ~~~~~il~SAT~~~~~l~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 336 (755)
++...+.++||.+.+.-.+. -...|+-......|.-..+|... -.+.+...+..+.... ...
T Consensus 175 ~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~-~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~ 253 (641)
T KOG0352|consen 175 PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNH-MKSFITDCLTVLADFSSSNLGKHEKASQNKKT 253 (641)
T ss_pred CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHH-HHHHhhhHhHhHHHHHHHhcCChhhhhcCCCC
Confidence 88999999999966533322 22334333333233233333211 0111111111111111 011
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCe
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGI 416 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v 416 (755)
..|..||||.|+++++.++-.|...+ +....+|+||...+|.++-+.+-+|+..||+||+-+++|+|-|+|
T Consensus 254 ~~GCGIVYCRTR~~cEq~AI~l~~~G---------i~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~V 324 (641)
T KOG0352|consen 254 FTGCGIVYCRTRNECEQVAIMLEIAG---------IPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDV 324 (641)
T ss_pred cCcceEEEeccHHHHHHHHHHhhhcC---------cchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcce
Confidence 23789999999999999999998744 788899999999999999999999999999999999999999999
Q ss_pred eEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 417 KYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 417 ~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
++||+++. |.+.+-|.|-.|||||.| +..|=..|++++.
T Consensus 325 RFViHW~~------------------~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~ 364 (641)
T KOG0352|consen 325 RFVIHWSP------------------SQNLAGYYQESGRAGRDGKRSYCRLYYSRQDK 364 (641)
T ss_pred eEEEecCc------------------hhhhHHHHHhccccccCCCccceeeeecccch
Confidence 99999999 999999999999999999 5788777777655
No 91
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.94 E-value=1.4e-27 Score=244.03 Aligned_cols=268 Identities=18% Similarity=0.260 Sum_probs=184.0
Q ss_pred ccccCccHHHHHHHHHHHHHHH---h-CCccc--cEEeeeeeccc--cCCCCceEEEeCcHHHHHHHhCCC-CCCCCCce
Q 048746 177 KVGCTQPRRVAAMSVAARVSQE---M-GVKLG--HEVGYSIRFED--CTSEKTILKYMTDGMLLREILSEP-NLESYSVL 247 (755)
Q Consensus 177 ~ilv~~P~r~la~q~a~~~~~~---~-~~~~g--~~vg~~~~~~~--~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~v 247 (755)
..+|+-|.|+||.|+...+.+. . +..+. ..+|.....+. ...++++|+++|||+|++.+.... .+..+.++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFl 367 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFL 367 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEE
Confidence 6789999999999999866552 1 11111 22331111121 123679999999999999987654 78899999
Q ss_pred EeecccccCC---ccchHHHHHHHHHhcC---CCcEEEEeccCC---CHHHHHhhhCCCCE-EEecCc-cccceEEEec-
Q 048746 248 MVDEAHERTL---STDILFGLLKDLIKFR---SDLKLLISSATL---DAEKFSDYFGSAPI-FKIPGR-RYPVEIHYTK- 315 (755)
Q Consensus 248 IiDEaHer~~---~~d~~~~~l~~~~~~~---~~~~~il~SAT~---~~~~l~~~~~~~~~-~~~~~~-~~~v~~~~~~- 315 (755)
|+||++ -.+ .+|+...+...+-... ..++.+++|||+ ++..+.+-...-|. +.+.|. ..|-+++...
T Consensus 368 vlDead-~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~ 446 (725)
T KOG0349|consen 368 VLDEAD-LLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVK 446 (725)
T ss_pred Eecchh-hhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcccee
Confidence 999999 222 2344444444443332 347899999999 55555544432222 111111 1111111100
Q ss_pred --CC-----------------------------ccchHHHHHHHH-----HHHHhhCCCCCEEEEcCCHHHHHHHHHHHH
Q 048746 316 --AP-----------------------------EADYIDAAIVTV-----LQIHVTQSPGDILVFLTGQEEIETADEILK 359 (755)
Q Consensus 316 --~~-----------------------------~~~~~~~~~~~~-----~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~ 359 (755)
.| +.+....+...+ +.........+.||||.++.+|+.+.+++.
T Consensus 447 lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~ 526 (725)
T KOG0349|consen 447 LVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMN 526 (725)
T ss_pred ecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHH
Confidence 00 011111111111 111122335789999999999999999999
Q ss_pred HhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccc
Q 048746 360 HRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESL 439 (755)
Q Consensus 360 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l 439 (755)
+.+. ..+.++++||+..+.+|..-++.|+.+..+.||||++|+||+||.++-++||.-+
T Consensus 527 qkgg------~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtl--------------- 585 (725)
T KOG0349|consen 527 QKGG------KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTL--------------- 585 (725)
T ss_pred HcCC------ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEec---------------
Confidence 8653 4588999999999999999999999999999999999999999999999999988
Q ss_pred cccccCHHhHHhhhcccCCCCC-CEEEEecc
Q 048746 440 LVHPISKASAMQRAGRSGRTGP-GKCFRLYT 469 (755)
Q Consensus 440 ~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~ 469 (755)
|-++.+|+||+||+||... |.++.|..
T Consensus 586 ---pd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 586 ---PDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred ---CcccchhhhhhhccchhhhcceeEEEee
Confidence 9999999999999999885 99998875
No 92
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.94 E-value=5.4e-26 Score=264.19 Aligned_cols=313 Identities=17% Similarity=0.203 Sum_probs=204.3
Q ss_pred CCCChHHHHHHHHHHHc---CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCcccc
Q 048746 129 TLPIYPYRDELLQAVNE---YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGH 205 (755)
Q Consensus 129 ~lPl~~~Q~~~l~~i~~---~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~ 205 (755)
...+++.|.++++.+.+ ++++++.|+||||||......+... ...++++++++|+++|+.|+++++.+.+|..+..
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~-l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~ 220 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEV-LAQGKQALVLVPEIALTPQMLARFRARFGAPVAV 220 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEE
Confidence 34579999999999887 4789999999999994433333332 2345689999999999999999999988876655
Q ss_pred EEeeeeecc------ccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchH----HHHHHHHHhcCCC
Q 048746 206 EVGYSIRFE------DCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDIL----FGLLKDLIKFRSD 275 (755)
Q Consensus 206 ~vg~~~~~~------~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~----~~~l~~~~~~~~~ 275 (755)
..|.....+ .......+|+|+|++.+. ..+.++++|||||+|+-+...+-. ..-+........+
T Consensus 221 ~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~ 294 (679)
T PRK05580 221 LHSGLSDGERLDEWRKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLEN 294 (679)
T ss_pred EECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccC
Confidence 554221111 112345799999998774 247889999999999544332210 0111222334568
Q ss_pred cEEEEeccCCCHHHHHhhhCC-CCEEEecCcc----ccceEEEecCCc-------cchHHHHHHHHHHHHhhCCCCCEEE
Q 048746 276 LKLLISSATLDAEKFSDYFGS-APIFKIPGRR----YPVEIHYTKAPE-------ADYIDAAIVTVLQIHVTQSPGDILV 343 (755)
Q Consensus 276 ~~~il~SAT~~~~~l~~~~~~-~~~~~~~~~~----~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~iLV 343 (755)
.++|++|||+..+.+.....+ ...+.+..+. .| .+....... .......+..+.+.. ..+.++||
T Consensus 295 ~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p-~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l--~~g~qvll 371 (679)
T PRK05580 295 IPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLP-EVEIIDMRELLRGENGSFLSPPLLEAIKQRL--ERGEQVLL 371 (679)
T ss_pred CCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCC-eEEEEechhhhhhcccCCCCHHHHHHHHHHH--HcCCeEEE
Confidence 899999999988776654322 2233333332 22 222222110 001122222222211 23568999
Q ss_pred EcCCHH------------------------------------------------------------HHHHHHHHHHHhhc
Q 048746 344 FLTGQE------------------------------------------------------------EIETADEILKHRTR 363 (755)
Q Consensus 344 F~~~~~------------------------------------------------------------~~~~l~~~L~~~~~ 363 (755)
|+|.+. .++.+++.|.+.+
T Consensus 372 ~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~f- 450 (679)
T PRK05580 372 FLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELF- 450 (679)
T ss_pred EEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhC-
Confidence 987532 3455555565543
Q ss_pred ccCCCCCceEEEeccCCCC--HHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEE--EeCCCcccccccCCCCcccc
Q 048746 364 GLGSKIAELIICPIYANLP--TELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYV--IDPGFSKVKSYNPRTGMESL 439 (755)
Q Consensus 364 ~~~~~~~~~~v~~lh~~l~--~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~V--Id~g~~k~~~~~~~~~~~~l 439 (755)
++..+..+|+++. .++++++++.|++|+.+|||+|+++++|+|+|+|++| +|.|. ......+
T Consensus 451 ------p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~--------~l~~pdf 516 (679)
T PRK05580 451 ------PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADL--------GLFSPDF 516 (679)
T ss_pred ------CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCch--------hccCCcc
Confidence 4577889999987 4678999999999999999999999999999999998 45554 1111111
Q ss_pred cccccCHHhHHhhhcccCCCC-CCEEEE
Q 048746 440 LVHPISKASAMQRAGRSGRTG-PGKCFR 466 (755)
Q Consensus 440 ~~~p~s~~~~~QR~GRaGR~g-~G~~~~ 466 (755)
...-.....+.|++|||||.+ +|.++.
T Consensus 517 ra~Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 517 RASERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred chHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 111234578999999999977 588774
No 93
>PRK09694 helicase Cas3; Provisional
Probab=99.94 E-value=1.6e-25 Score=261.74 Aligned_cols=299 Identities=20% Similarity=0.196 Sum_probs=183.8
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHh-cccCCCccccCccHHHHHHHHHHHHHHH----hC-Ccc
Q 048746 130 LPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEA-GYTKQGKVGCTQPRRVAAMSVAARVSQE----MG-VKL 203 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~ilv~~P~r~la~q~a~~~~~~----~~-~~~ 203 (755)
.| +|+|..+.........+|+.||||+|||..+..+.... ......++++..||+++++++++|+.+. ++ ..+
T Consensus 286 ~p-~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v 364 (878)
T PRK09694 286 QP-RQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPNL 364 (878)
T ss_pred CC-hHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 56 99999886554457789999999999994433332221 1122358999999999999999998752 22 223
Q ss_pred ccEEeeee---eccc--------------------------cCCCCceEEEeCcHHHHHHHhCCC--CCCC----CCceE
Q 048746 204 GHEVGYSI---RFED--------------------------CTSEKTILKYMTDGMLLREILSEP--NLES----YSVLM 248 (755)
Q Consensus 204 g~~vg~~~---~~~~--------------------------~~~~~~~I~v~T~g~Ll~~l~~~~--~l~~----~~~vI 248 (755)
+...|... .+.. +..--..|+|+|...++..+...+ .+.. -++||
T Consensus 365 ~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvI 444 (878)
T PRK09694 365 ILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLI 444 (878)
T ss_pred EeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEE
Confidence 22233111 0000 000126899999987775544332 2222 35899
Q ss_pred eecccccCCccc-hHHHHHHHHHhcCCCcEEEEeccCCCHHHH---HhhhCCC---------CEEEecCc----c-----
Q 048746 249 VDEAHERTLSTD-ILFGLLKDLIKFRSDLKLLISSATLDAEKF---SDYFGSA---------PIFKIPGR----R----- 306 (755)
Q Consensus 249 iDEaHer~~~~d-~~~~~l~~~~~~~~~~~~il~SAT~~~~~l---~~~~~~~---------~~~~~~~~----~----- 306 (755)
|||+|.-...+. ++..+++.+.. ...++|+||||++...- .+-++.. |.+...+. .
T Consensus 445 iDEVHAyD~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~ 522 (878)
T PRK09694 445 VDEVHAYDAYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSA 522 (878)
T ss_pred EechhhCCHHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeeccc
Confidence 999993322222 22333333222 35679999999975433 2222221 11111000 0
Q ss_pred ------ccceEEEecC--CccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEecc
Q 048746 307 ------YPVEIHYTKA--PEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIY 378 (755)
Q Consensus 307 ------~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh 378 (755)
.+..+..... .........+..+.+.. ..++++||||||++.++.+++.|++... .+..+..+|
T Consensus 523 ~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~------~~~~v~llH 594 (878)
T PRK09694 523 HPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNN------TQVDIDLFH 594 (878)
T ss_pred cccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCC------CCceEEEEe
Confidence 0011111110 10011122233333322 3467899999999999999999987431 235788999
Q ss_pred CCCCHHHHH----HHhCCC-CCCC---cEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHH
Q 048746 379 ANLPTELQA----KIFEPT-PEGA---RKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAM 450 (755)
Q Consensus 379 ~~l~~~~r~----~i~~~f-~~g~---~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~ 450 (755)
|+++..+|. ++++.| ++|+ .+|||||+++|+||||+ ++++|.... | ..+++
T Consensus 595 srf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdla------------------P--idsLi 653 (878)
T PRK09694 595 ARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQLC------------------P--VDLLF 653 (878)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECCC------------------C--HHHHH
Confidence 999999994 566677 6666 47999999999999995 788885444 5 67999
Q ss_pred hhhcccCCCC
Q 048746 451 QRAGRSGRTG 460 (755)
Q Consensus 451 QR~GRaGR~g 460 (755)
||+||+||.+
T Consensus 654 QRaGR~~R~~ 663 (878)
T PRK09694 654 QRLGRLHRHH 663 (878)
T ss_pred HHHhccCCCC
Confidence 9999999987
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=1.8e-25 Score=250.93 Aligned_cols=292 Identities=16% Similarity=0.197 Sum_probs=187.6
Q ss_pred EEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeec------cccCCCCceE
Q 048746 150 VIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRF------EDCTSEKTIL 223 (755)
Q Consensus 150 ii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~------~~~~~~~~~I 223 (755)
++.||||||||.....++... ...++++++++|+++|+.|+++++.+.++..+....|..... ........+|
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~I 79 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILV 79 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 478999999995443333332 334668999999999999999999998876654443311110 1112345789
Q ss_pred EEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHH----HHHHHHHhcCCCcEEEEeccCCCHHHHHhhhCCC-C
Q 048746 224 KYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILF----GLLKDLIKFRSDLKLLISSATLDAEKFSDYFGSA-P 298 (755)
Q Consensus 224 ~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~----~~l~~~~~~~~~~~~il~SAT~~~~~l~~~~~~~-~ 298 (755)
+|+|+..+. ..+.++++|||||+|+-+...+-.. .-+..+.....+.++|++|||+..+.+.....+. .
T Consensus 80 VVGTrsalf------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~g~~~ 153 (505)
T TIGR00595 80 VIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQKAYR 153 (505)
T ss_pred EECChHHHc------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhcCCeE
Confidence 999998764 2478899999999995444332111 0112223345688999999999888776654332 1
Q ss_pred EEEecCc---cccceEEEecCCcc---chH-HHHHHHHHHHHhhCCCCCEEEEcCCHHH---------------------
Q 048746 299 IFKIPGR---RYPVEIHYTKAPEA---DYI-DAAIVTVLQIHVTQSPGDILVFLTGQEE--------------------- 350 (755)
Q Consensus 299 ~~~~~~~---~~~v~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~iLVF~~~~~~--------------------- 350 (755)
....+.+ .....+.+...... ..+ ...+..+.+.. ..++++|||+|++.-
T Consensus 154 ~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l--~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~ 231 (505)
T TIGR00595 154 LLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTL--AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVS 231 (505)
T ss_pred EeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHH--HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCc
Confidence 2222222 11122222221111 111 22222332222 235789999876542
Q ss_pred ---------------------------------------HHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHH--HHH
Q 048746 351 ---------------------------------------IETADEILKHRTRGLGSKIAELIICPIYANLPTELQ--AKI 389 (755)
Q Consensus 351 ---------------------------------------~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r--~~i 389 (755)
++.+.+.|.+.+ ++..+..+|++++...+ +++
T Consensus 232 l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f-------p~~~v~~~d~d~~~~~~~~~~~ 304 (505)
T TIGR00595 232 LTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF-------PGARIARIDSDTTSRKGAHEAL 304 (505)
T ss_pred eEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC-------CCCcEEEEecccccCccHHHHH
Confidence 466666776654 45789999999987665 889
Q ss_pred hCCCCCCCcEEEEeCCcccccCcCCCeeEEE--eCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEE
Q 048746 390 FEPTPEGARKVVLATNIAETSLTIDGIKYVI--DPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCF 465 (755)
Q Consensus 390 ~~~f~~g~~~vlvaT~i~~~Gidip~v~~VI--d~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~ 465 (755)
++.|++|+.+|||+|+++++|+|+|+|++|+ |.|. ..+...+...-.....+.|++|||||.+ +|.++
T Consensus 305 l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~--------~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vi 375 (505)
T TIGR00595 305 LNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADS--------GLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVI 375 (505)
T ss_pred HHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcc--------cccCcccchHHHHHHHHHHHHhccCCCCCCCEEE
Confidence 9999999999999999999999999999874 5554 1111111111234678999999999977 48877
No 95
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.93 E-value=2.6e-24 Score=215.46 Aligned_cols=297 Identities=20% Similarity=0.267 Sum_probs=209.6
Q ss_pred ChHHHHHH----HHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhC-CccccE
Q 048746 132 IYPYRDEL----LQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMG-VKLGHE 206 (755)
Q Consensus 132 l~~~Q~~~----l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~-~~~g~~ 206 (755)
+++.|+.+ +..+.+.++.++.|-||+|||-.+.+.+... +..|++|.+..||...+.+++.|+.+.+. ..+...
T Consensus 98 Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~a-l~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 98 LSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQA-LNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred cChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHH-HhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 56677654 4456778999999999999996665555433 45578999999999999999999998774 555444
Q ss_pred EeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCC
Q 048746 207 VGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLD 286 (755)
Q Consensus 207 vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~ 286 (755)
.| ++..-..+.++|+|...|++. -..++++||||+|...+..|..+...-.- ...+.--+|.+|||..
T Consensus 177 yg-----~S~~~fr~plvVaTtHQLlrF------k~aFD~liIDEVDAFP~~~d~~L~~Av~~-ark~~g~~IylTATp~ 244 (441)
T COG4098 177 YG-----DSDSYFRAPLVVATTHQLLRF------KQAFDLLIIDEVDAFPFSDDQSLQYAVKK-ARKKEGATIYLTATPT 244 (441)
T ss_pred ec-----CCchhccccEEEEehHHHHHH------HhhccEEEEeccccccccCCHHHHHHHHH-hhcccCceEEEecCCh
Confidence 44 333334589999999999986 35689999999997666677554443221 1334567899999997
Q ss_pred HHHHHhhhCC-CCEEEecCc----cccceEEEecCCccchH-----HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHH
Q 048746 287 AEKFSDYFGS-APIFKIPGR----RYPVEIHYTKAPEADYI-----DAAIVTVLQIHVTQSPGDILVFLTGQEEIETADE 356 (755)
Q Consensus 287 ~~~l~~~~~~-~~~~~~~~~----~~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~ 356 (755)
.+...+...+ ...+.++.| +-|+.-+.-..+...++ ...+...++-+.. .+.++|||+|+.+..+.++.
T Consensus 245 k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~-~~~P~liF~p~I~~~eq~a~ 323 (441)
T COG4098 245 KKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRK-TGRPVLIFFPEIETMEQVAA 323 (441)
T ss_pred HHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHh-cCCcEEEEecchHHHHHHHH
Confidence 6655555433 234556655 22333332222222222 2233444443333 36799999999999999999
Q ss_pred HHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCc
Q 048746 357 ILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGM 436 (755)
Q Consensus 357 ~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~ 436 (755)
.|+... +...+...||. ...|.+..+.|++|+.++|++|.|+|||+++|+|+++|- |- ..
T Consensus 324 ~lk~~~-------~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl-ga--------eh-- 383 (441)
T COG4098 324 ALKKKL-------PKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL-GA--------EH-- 383 (441)
T ss_pred HHHhhC-------Cccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe-cC--------Cc--
Confidence 997755 34667788886 456788888999999999999999999999999998761 11 10
Q ss_pred ccccccccCHHhHHhhhcccCCCC--C-CEEEEe
Q 048746 437 ESLLVHPISKASAMQRAGRSGRTG--P-GKCFRL 467 (755)
Q Consensus 437 ~~l~~~p~s~~~~~QR~GRaGR~g--~-G~~~~l 467 (755)
.-.+.+..+|.+||+||.- | |..+-+
T Consensus 384 -----~vfTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 384 -----RVFTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred -----ccccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 0267899999999999976 4 665444
No 96
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.93 E-value=4e-24 Score=237.23 Aligned_cols=289 Identities=21% Similarity=0.225 Sum_probs=198.3
Q ss_pred cCCCChHHHHHHHHHHHc----CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCc-
Q 048746 128 KTLPIYPYRDELLQAVNE----YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVK- 202 (755)
Q Consensus 128 ~~lPl~~~Q~~~l~~i~~----~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~- 202 (755)
....++++|+++++++.+ ++..++++|||+|||.+...++.... .+++|++||++|+.|.++++.+.++..
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~----~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~ 108 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK----RSTLVLVPTKELLDQWAEALKKFLLLND 108 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc----CCEEEEECcHHHHHHHHHHHHHhcCCcc
Confidence 445569999999999888 89999999999999988777776652 249999999999999998888876653
Q ss_pred -cccEEeeeeeccccCCCCceEEEeCcHHHHHH-HhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcE-EE
Q 048746 203 -LGHEVGYSIRFEDCTSEKTILKYMTDGMLLRE-ILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLK-LL 279 (755)
Q Consensus 203 -~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~-l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~-~i 279 (755)
.|..-|.... ... ..|.|+|...+.+. ........++++||+|||| +.. .+....+...+ .... ++
T Consensus 109 ~~g~~~~~~~~----~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~H-h~~-a~~~~~~~~~~----~~~~~~L 177 (442)
T COG1061 109 EIGIYGGGEKE----LEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVH-HLP-APSYRRILELL----SAAYPRL 177 (442)
T ss_pred ccceecCceec----cCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccc-cCC-cHHHHHHHHhh----hccccee
Confidence 3322221111 111 57999999999886 2233334479999999999 333 33333333333 2333 99
Q ss_pred EeccCC---CHH---HHHhhhCCCCEEEec-------CccccceEEEecCCc-----cchH-------------------
Q 048746 280 ISSATL---DAE---KFSDYFGSAPIFKIP-------GRRYPVEIHYTKAPE-----ADYI------------------- 322 (755)
Q Consensus 280 l~SAT~---~~~---~l~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~-----~~~~------------------- 322 (755)
++|||+ |.. .+..+++ ..++... |...|.......... ..+.
T Consensus 178 GLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (442)
T COG1061 178 GLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAE 256 (442)
T ss_pred eeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHH
Confidence 999997 322 2333333 1222222 222233222211100 0000
Q ss_pred ----------HHHHHHHHHHHhhC-CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhC
Q 048746 323 ----------DAAIVTVLQIHVTQ-SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFE 391 (755)
Q Consensus 323 ----------~~~~~~~~~~~~~~-~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~ 391 (755)
...+..+..+.... .+.+++||+....++..++..+... +. +..+.|..+..+|..+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~---------~~-~~~it~~t~~~eR~~il~ 326 (442)
T COG1061 257 NEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP---------GI-VEAITGETPKEEREAILE 326 (442)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC---------Cc-eEEEECCCCHHHHHHHHH
Confidence 00111111111111 3679999999999999999988763 23 777899999999999999
Q ss_pred CCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC
Q 048746 392 PTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG 460 (755)
Q Consensus 392 ~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g 460 (755)
.|+.|..++||++.++..|+|+|+++++|...- ..|...|+||+||.=|..
T Consensus 327 ~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~------------------t~S~~~~~Q~lGR~LR~~ 377 (442)
T COG1061 327 RFRTGGIKVLVTVKVLDEGVDIPDADVLIILRP------------------TGSRRLFIQRLGRGLRPA 377 (442)
T ss_pred HHHcCCCCEEEEeeeccceecCCCCcEEEEeCC------------------CCcHHHHHHHhhhhccCC
Confidence 999999999999999999999999999994443 899999999999999944
No 97
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.92 E-value=4.9e-24 Score=214.76 Aligned_cols=306 Identities=17% Similarity=0.199 Sum_probs=212.4
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEee
Q 048746 132 IYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGY 209 (755)
Q Consensus 132 l~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~ 209 (755)
..|.|.++|.+...+.+++++.|||.||| +++|.++. .+..+|++|...|...+.-.+.. +|......-.-
T Consensus 95 frplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~plislmedqil~lkq-lgi~as~lnan 167 (695)
T KOG0353|consen 95 FRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVICPLISLMEDQILQLKQ-LGIDASMLNAN 167 (695)
T ss_pred cChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeechhHHHHHHHHHHHHH-hCcchhhccCc
Confidence 46779999999999999999999999999 89998874 35789999999999887766655 55433211110
Q ss_pred eeec-----cc---cCCCCceEEEeCcHHHHH------HHhCCCCCCCCCceEeecccccCCc-cchH--HHHHHHHHhc
Q 048746 210 SIRF-----ED---CTSEKTILKYMTDGMLLR------EILSEPNLESYSVLMVDEAHERTLS-TDIL--FGLLKDLIKF 272 (755)
Q Consensus 210 ~~~~-----~~---~~~~~~~I~v~T~g~Ll~------~l~~~~~l~~~~~vIiDEaHer~~~-~d~~--~~~l~~~~~~ 272 (755)
+... +. ......+++|.||+.+.. .|........+.+|-|||+|.-+.+ .||. ...+..+.+.
T Consensus 168 sske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrq 247 (695)
T KOG0353|consen 168 SSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQ 247 (695)
T ss_pred ccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHh
Confidence 0000 00 122356899999987643 3333335667889999999943321 2222 1234445557
Q ss_pred CCCcEEEEeccCCCHH---HHHhhhCCCCEEEecCccccceEEEecCCccchHHHHHHHHHHHH-hhCCCCCEEEEcCCH
Q 048746 273 RSDLKLLISSATLDAE---KFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIH-VTQSPGDILVFLTGQ 348 (755)
Q Consensus 273 ~~~~~~il~SAT~~~~---~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iLVF~~~~ 348 (755)
.++..+|+++||.... +..+.+.-...+...........+|.....+...+..+..+..+. ....+...||||-++
T Consensus 248 f~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq 327 (695)
T KOG0353|consen 248 FKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQ 327 (695)
T ss_pred CCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEecc
Confidence 7899999999998322 233333221111111111111223322211112222333333332 233355679999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccc
Q 048746 349 EEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVK 428 (755)
Q Consensus 349 ~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~ 428 (755)
++++.++..|+..+ +....+|+.|.++++..+-+.+..|++.|||||-..++|||-|+|++||+..+
T Consensus 328 ~d~ekva~alkn~g---------i~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl---- 394 (695)
T KOG0353|consen 328 KDCEKVAKALKNHG---------IHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSL---- 394 (695)
T ss_pred ccHHHHHHHHHhcC---------ccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEeccc----
Confidence 99999999999865 67778999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccccccccCHHhHHh-------------------------------------------hhcccCCCC-CCEE
Q 048746 429 SYNPRTGMESLLVHPISKASAMQ-------------------------------------------RAGRSGRTG-PGKC 464 (755)
Q Consensus 429 ~~~~~~~~~~l~~~p~s~~~~~Q-------------------------------------------R~GRaGR~g-~G~~ 464 (755)
|.|+++|.| ..|||||.+ +..|
T Consensus 395 --------------~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~c 460 (695)
T KOG0353|consen 395 --------------PKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADC 460 (695)
T ss_pred --------------chhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccE
Confidence 999999999 789999988 6888
Q ss_pred EEeccCc
Q 048746 465 FRLYTLH 471 (755)
Q Consensus 465 ~~l~~~~ 471 (755)
+..|.-.
T Consensus 461 ilyy~~~ 467 (695)
T KOG0353|consen 461 ILYYGFA 467 (695)
T ss_pred EEEechH
Confidence 8877643
No 98
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.92 E-value=1.5e-23 Score=252.30 Aligned_cols=315 Identities=18% Similarity=0.288 Sum_probs=199.5
Q ss_pred CCChHHHHHHHHHHH-----cCCeEEEEccCCCchhccHHHHHHHhc-ccCCCccccCccHHHHHHHHHHHHHHHhCCcc
Q 048746 130 LPIYPYRDELLQAVN-----EYQVLVIVGETGSGKTTQIPQYLHEAG-YTKQGKVGCTQPRRVAAMSVAARVSQEMGVKL 203 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~-----~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~ 203 (755)
..++++|.+++.++. ..+..+++++||||||..+..++.... .....+||+++||++|+.|....+... +...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~-~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDT-KIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhc-cccc
Confidence 346899999998764 246799999999999944433333221 122358999999999999999988763 3222
Q ss_pred ccEEe--eeee--ccccCCCCceEEEeCcHHHHHHHhCC------CCCCCCCceEeecccccCCccch------------
Q 048746 204 GHEVG--YSIR--FEDCTSEKTILKYMTDGMLLREILSE------PNLESYSVLMVDEAHERTLSTDI------------ 261 (755)
Q Consensus 204 g~~vg--~~~~--~~~~~~~~~~I~v~T~g~Ll~~l~~~------~~l~~~~~vIiDEaHer~~~~d~------------ 261 (755)
+..+. +.+. .+........|+|+|...+.+.+... ..+..+++||||||| |+...+-
T Consensus 491 ~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 491 DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchh
Confidence 21110 1111 11122345799999999988765321 356789999999999 7752110
Q ss_pred --HHHHHHHHHhcCCCcEEEEeccCCCHHHHHhhhCCCCEEEec-------Cccc----cceEE---------EecC---
Q 048746 262 --LFGLLKDLIKFRSDLKLLISSATLDAEKFSDYFGSAPIFKIP-------GRRY----PVEIH---------YTKA--- 316 (755)
Q Consensus 262 --~~~~l~~~~~~~~~~~~il~SAT~~~~~l~~~~~~~~~~~~~-------~~~~----~v~~~---------~~~~--- 316 (755)
.....+.++... +..+|+||||+.. ...++|+. |+.... |... |+.+. +...
T Consensus 570 ~~~~~~yr~iL~yF-dA~~IGLTATP~r-~t~~~FG~-pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~ 646 (1123)
T PRK11448 570 LDYVSKYRRVLDYF-DAVKIGLTATPAL-HTTEIFGE-PVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEV 646 (1123)
T ss_pred hhHHHHHHHHHhhc-CccEEEEecCCcc-chhHHhCC-eeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchh
Confidence 012234444433 4678999999953 23456653 332211 1111 11111 0000
Q ss_pred ---------------Cc-cchH--------------HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccC
Q 048746 317 ---------------PE-ADYI--------------DAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLG 366 (755)
Q Consensus 317 ---------------~~-~~~~--------------~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~ 366 (755)
+. ..+. ...+..+.+......++++||||.++++++.+++.|.+......
T Consensus 647 ~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~ 726 (1123)
T PRK11448 647 EVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKY 726 (1123)
T ss_pred hhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhc
Confidence 00 0000 00111122222222358999999999999999999887543221
Q ss_pred CCCCceEEEeccCCCCHHHHHHHhCCCCCCCc-EEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccC
Q 048746 367 SKIAELIICPIYANLPTELQAKIFEPTPEGAR-KVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPIS 445 (755)
Q Consensus 367 ~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~-~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s 445 (755)
.......+..+||+.+ ++..+++.|+++.. +|+|+++++.+|+|+|.|.+||.... +.|
T Consensus 727 ~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rp------------------vkS 786 (1123)
T PRK11448 727 GQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRR------------------VRS 786 (1123)
T ss_pred CCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecC------------------CCC
Confidence 2222335566888875 46679999998876 79999999999999999999997666 899
Q ss_pred HHhHHhhhcccCCCCC--CE-EEEecc
Q 048746 446 KASAMQRAGRSGRTGP--GK-CFRLYT 469 (755)
Q Consensus 446 ~~~~~QR~GRaGR~g~--G~-~~~l~~ 469 (755)
...|+||+||+.|..+ |+ .+.+|.
T Consensus 787 ~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 787 RILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred HHHHHHHHhhhccCCccCCCceEEEEe
Confidence 9999999999999887 44 444444
No 99
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.91 E-value=1.8e-23 Score=229.89 Aligned_cols=314 Identities=16% Similarity=0.170 Sum_probs=222.0
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHcC------CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHH
Q 048746 118 SALEMLQEERKTLPIYPYRDELLQAVNEY------QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSV 191 (755)
Q Consensus 118 ~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~ 191 (755)
...+++.+. -.+.+|..|..++.-|..+ -+=+++|.-|||||..+...++.. ...+.++...+||-.||.|-
T Consensus 250 ~l~~~~~~~-LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~a-i~~G~Q~ALMAPTEILA~QH 327 (677)
T COG1200 250 ELLAKFLAA-LPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAA-IEAGYQAALMAPTEILAEQH 327 (677)
T ss_pred HHHHHHHHh-CCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHH-HHcCCeeEEeccHHHHHHHH
Confidence 344444333 4455789999999988653 246899999999995555554443 44566899999999999999
Q ss_pred HHHHHHHh---CCccccEEeeeeec------cccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchH
Q 048746 192 AARVSQEM---GVKLGHEVGYSIRF------EDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDIL 262 (755)
Q Consensus 192 a~~~~~~~---~~~~g~~vg~~~~~------~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~ 262 (755)
+..+++.+ |..++..+|..-.. +...+...+|+|+|...+ +.+..+.++.+|||||=|..++.
T Consensus 328 ~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi----Qd~V~F~~LgLVIiDEQHRFGV~---- 399 (677)
T COG1200 328 YESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI----QDKVEFHNLGLVIIDEQHRFGVH---- 399 (677)
T ss_pred HHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh----hcceeecceeEEEEeccccccHH----
Confidence 99988865 44444444421111 123456789999998765 34458999999999999932222
Q ss_pred HHHHHHHHhcCC-CcEEEEeccCCCHHHH-HhhhCCCCE---EEecCccccceEEEecCCccchHHHHHHHHHHHHhhCC
Q 048746 263 FGLLKDLIKFRS-DLKLLISSATLDAEKF-SDYFGSAPI---FKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQS 337 (755)
Q Consensus 263 ~~~l~~~~~~~~-~~~~il~SAT~~~~~l-~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (755)
--..+..... ...+++||||+=+..+ -..|++-.+ -..|.-..|+.....+....+. .+..+..-.. .
T Consensus 400 --QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~---v~e~i~~ei~--~ 472 (677)
T COG1200 400 --QRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPE---VYERIREEIA--K 472 (677)
T ss_pred --HHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHH---HHHHHHHHHH--c
Confidence 2333334444 5789999999944433 345555433 3345455688888877644332 2223332222 4
Q ss_pred CCCEEEEcCCHHHH--------HHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccc
Q 048746 338 PGDILVFLTGQEEI--------ETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAET 409 (755)
Q Consensus 338 ~~~iLVF~~~~~~~--------~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~ 409 (755)
+.++.|.||-.++- ..+++.|.... ++..+..+||.|++++++.+++.|++|+.+|||||.+.|.
T Consensus 473 GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~-------~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEV 545 (677)
T COG1200 473 GRQAYVVCPLIEESEKLELQAAEELYEELKSFL-------PELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEV 545 (677)
T ss_pred CCEEEEEeccccccccchhhhHHHHHHHHHHHc-------ccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEe
Confidence 77899999876654 45555565433 5688999999999999999999999999999999999999
Q ss_pred cCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCcc
Q 048746 410 SLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHN 472 (755)
Q Consensus 410 Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~ 472 (755)
|||+|+.++.|-.+. +..-.++.-|-.||+||.+ .+.|+.+|....
T Consensus 546 GVdVPnATvMVIe~A-----------------ERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 546 GVDVPNATVMVIENA-----------------ERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred cccCCCCeEEEEech-----------------hhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 999999998663332 1356788999999999988 599999998653
No 100
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=1.2e-23 Score=235.84 Aligned_cols=339 Identities=18% Similarity=0.246 Sum_probs=226.6
Q ss_pred chHHHHHHHHHhcCCCChHHHHHHHHH--HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHH
Q 048746 116 EKSALEMLQEERKTLPIYPYRDELLQA--VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAA 193 (755)
Q Consensus 116 ~~~~~~~l~~~~~~lPl~~~Q~~~l~~--i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~ 193 (755)
++.......+..+.+.++.+|.+++.. ++.+++.|..+||+.|||...-..++......+..++.+.|....+.+-..
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~ 287 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKIS 287 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHh
Confidence 344444455556667789999999876 778999999999999999776666655545455577777888777776665
Q ss_pred HHHHHhCCccccEE-eeeeecccc-CCCCceEEEeCcHH---HHHHHhCCCCCCCCCceEeeccc-----ccCCccchHH
Q 048746 194 RVSQEMGVKLGHEV-GYSIRFEDC-TSEKTILKYMTDGM---LLREILSEPNLESYSVLMVDEAH-----ERTLSTDILF 263 (755)
Q Consensus 194 ~~~~~~~~~~g~~v-g~~~~~~~~-~~~~~~I~v~T~g~---Ll~~l~~~~~l~~~~~vIiDEaH-----er~~~~d~~~ 263 (755)
.+.. +...+|..| +|.-++... ......+.+||-++ |.+.+.....+..+++||+||.| +|+. .+.
T Consensus 288 ~l~~-~~~~~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~---~lE 363 (1008)
T KOG0950|consen 288 ALSP-FSIDLGFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGA---ILE 363 (1008)
T ss_pred hhhh-hccccCCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccch---HHH
Confidence 5554 333333322 222122221 22456788999864 55555666678889999999999 2322 233
Q ss_pred HHHHHHHh--cCCCcEEEEeccCC-CHHHHHhhhCCCCEEEecCccccceEEEecCCccch--HHHHHHHHHH-------
Q 048746 264 GLLKDLIK--FRSDLKLLISSATL-DAEKFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADY--IDAAIVTVLQ------- 331 (755)
Q Consensus 264 ~~l~~~~~--~~~~~~~il~SAT~-~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~------- 331 (755)
.++..++- ....+|+|+||||+ |.+.++.|+. +.++...-|+.|+..+..+....-. ....+..+-.
T Consensus 364 ~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~-A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g 442 (1008)
T KOG0950|consen 364 LLLAKILYENLETSVQIIGMSATIPNNSLLQDWLD-AFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLG 442 (1008)
T ss_pred HHHHHHHHhccccceeEeeeecccCChHHHHHHhh-hhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcc
Confidence 33444333 23347899999999 8889999987 4444444444444433322111000 0111111110
Q ss_pred ---------H-HhhCC-CCCEEEEcCCHHHHHHHHHHHHHhhccc-------C----------------------CCCCc
Q 048746 332 ---------I-HVTQS-PGDILVFLTGQEEIETADEILKHRTRGL-------G----------------------SKIAE 371 (755)
Q Consensus 332 ---------~-~~~~~-~~~iLVF~~~~~~~~~l~~~L~~~~~~~-------~----------------------~~~~~ 371 (755)
+ ...-+ +.++|||||+++.|+.++..+....+.. + ...-.
T Consensus 443 ~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~ 522 (1008)
T KOG0950|consen 443 DEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIP 522 (1008)
T ss_pred cCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheecc
Confidence 0 00111 3459999999999999987665433210 0 01112
Q ss_pred eEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHh
Q 048746 372 LIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQ 451 (755)
Q Consensus 372 ~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~Q 451 (755)
..+..+|+|++.++|+.+...|++|...|++||++++.|++.|..+++|-.-+ ......+..+|.|
T Consensus 523 ~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~--------------~g~~~l~~~~YkQ 588 (1008)
T KOG0950|consen 523 YGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY--------------VGREFLTRLEYKQ 588 (1008)
T ss_pred ccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc--------------cccchhhhhhHHh
Confidence 45777899999999999999999999999999999999999999999996555 3334789999999
Q ss_pred hhcccCCCC---CCEEEEeccCccc
Q 048746 452 RAGRSGRTG---PGKCFRLYTLHNY 473 (755)
Q Consensus 452 R~GRaGR~g---~G~~~~l~~~~~~ 473 (755)
|+|||||.| -|.++.++.+.+.
T Consensus 589 M~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 589 MVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred hhhhhhhcccccCcceEEEeeccch
Confidence 999999999 4999999987763
No 101
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.90 E-value=1.3e-22 Score=234.75 Aligned_cols=304 Identities=18% Similarity=0.213 Sum_probs=229.6
Q ss_pred hcCCCChHHHHHHHHHHHc----C--CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhC
Q 048746 127 RKTLPIYPYRDELLQAVNE----Y--QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMG 200 (755)
Q Consensus 127 ~~~lPl~~~Q~~~l~~i~~----~--~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~ 200 (755)
.+..--|+=|..+|+.+.+ + -|=+|||.-|-|||-++..+.... ...+++|.|++||..||.|-++.+++.|.
T Consensus 590 ~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkA-V~~GKQVAvLVPTTlLA~QHy~tFkeRF~ 668 (1139)
T COG1197 590 SFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKA-VMDGKQVAVLVPTTLLAQQHYETFKERFA 668 (1139)
T ss_pred cCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHH-hcCCCeEEEEcccHHhHHHHHHHHHHHhc
Confidence 4445557889999988754 2 367999999999997766666555 23467999999999999999999998763
Q ss_pred CccccEEeeeeecccc----------CCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHH
Q 048746 201 VKLGHEVGYSIRFEDC----------TSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLI 270 (755)
Q Consensus 201 ~~~g~~vg~~~~~~~~----------~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~ 270 (755)
.....|+.-.||... ..+..+|+|+|...| ..+..+.+++++||||-|..++. .-..+.
T Consensus 669 -~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL----~kdv~FkdLGLlIIDEEqRFGVk------~KEkLK 737 (1139)
T COG1197 669 -GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL----SKDVKFKDLGLLIIDEEQRFGVK------HKEKLK 737 (1139)
T ss_pred -CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh----CCCcEEecCCeEEEechhhcCcc------HHHHHH
Confidence 223355555555432 345789999997544 45668999999999999943433 344555
Q ss_pred hcCCCcEEEEeccCCCHHHHHhhhCC---CCEEEe-cCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcC
Q 048746 271 KFRSDLKLLISSATLDAEKFSDYFGS---APIFKI-PGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLT 346 (755)
Q Consensus 271 ~~~~~~~~il~SAT~~~~~l~~~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~ 346 (755)
..+.++-++-||||+=+..+.--+.+ -.++.. |...+||..+..+....-..++....+ ..+|++-...|
T Consensus 738 ~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl------~RgGQvfYv~N 811 (1139)
T COG1197 738 ELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILREL------LRGGQVFYVHN 811 (1139)
T ss_pred HHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHH------hcCCEEEEEec
Confidence 67789999999999944433322222 123332 455788988887755433333222222 24899999999
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcc
Q 048746 347 GQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSK 426 (755)
Q Consensus 347 ~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k 426 (755)
..+.++.++..|++.. |+.++...||.|+..+-+.++..|-+|..+|||||.|.|+|||||+++.+|--..
T Consensus 812 rV~~Ie~~~~~L~~LV-------PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~A-- 882 (1139)
T COG1197 812 RVESIEKKAERLRELV-------PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERA-- 882 (1139)
T ss_pred chhhHHHHHHHHHHhC-------CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEecc--
Confidence 9999999999999987 6789999999999999999999999999999999999999999999998773221
Q ss_pred cccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEeccCcc
Q 048746 427 VKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTLHN 472 (755)
Q Consensus 427 ~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~~~ 472 (755)
.-.-.++..|-.||+||... |.||.||.+..
T Consensus 883 ---------------D~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 883 ---------------DKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred ---------------ccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 13556899999999999985 99999999754
No 102
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.89 E-value=1.7e-21 Score=229.39 Aligned_cols=301 Identities=15% Similarity=0.193 Sum_probs=192.7
Q ss_pred CCChHHHHHHHHHHHc--CCeEEEEccCCCchhccHHHHHHHhccc-CCCccccCccHHHHHHHHHHHHHHHhCCccccE
Q 048746 130 LPIYPYRDELLQAVNE--YQVLVIVGETGSGKTTQIPQYLHEAGYT-KQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHE 206 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~--~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~ 206 (755)
.-+.|+|..+...+.. ...+++.-++|.|||.++-.++...... ...+++|++|. .|..|....+.+.++......
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~ 229 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLF 229 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEE
Confidence 3358999999877543 3478999999999996655555443222 23489999998 788999888877777654221
Q ss_pred Eeee---eeccc-cCCCCceEEEeCcHHHHHH--HhCCCCCCCCCceEeecccccCCc----cchHHHHHHHHHhcCCCc
Q 048746 207 VGYS---IRFED-CTSEKTILKYMTDGMLLRE--ILSEPNLESYSVLMVDEAHERTLS----TDILFGLLKDLIKFRSDL 276 (755)
Q Consensus 207 vg~~---~~~~~-~~~~~~~I~v~T~g~Ll~~--l~~~~~l~~~~~vIiDEaHer~~~----~d~~~~~l~~~~~~~~~~ 276 (755)
-+.. ...+. ..-...++++++.+.+.+. ......-..+++||||||| +.-+ .......+..+... ..
T Consensus 230 ~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH-~lk~~~~~~s~~y~~v~~La~~--~~ 306 (956)
T PRK04914 230 DEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAH-HLVWSEEAPSREYQVVEQLAEV--IP 306 (956)
T ss_pred cCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechh-hhccCCCCcCHHHHHHHHHhhc--cC
Confidence 1100 00000 1112467899999887641 1111112478999999999 4321 11222333333322 24
Q ss_pred EEEEeccCCC---HH-HHHh--hh-----------------------------CCCCE----------------------
Q 048746 277 KLLISSATLD---AE-KFSD--YF-----------------------------GSAPI---------------------- 299 (755)
Q Consensus 277 ~~il~SAT~~---~~-~l~~--~~-----------------------------~~~~~---------------------- 299 (755)
.++++|||+. .+ .++. ++ .+.+.
T Consensus 307 ~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~ 386 (956)
T PRK04914 307 GVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQ 386 (956)
T ss_pred CEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHh
Confidence 6899999982 11 1110 00 00000
Q ss_pred -----------------------------EEecCc----cccce---EEEecCCccchHH--------------------
Q 048746 300 -----------------------------FKIPGR----RYPVE---IHYTKAPEADYID-------------------- 323 (755)
Q Consensus 300 -----------------------------~~~~~~----~~~v~---~~~~~~~~~~~~~-------------------- 323 (755)
+.-..| .+|.. .+....+ ..|..
T Consensus 387 ~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~-~~y~~~~~~~~~~~~~~~l~pe~~~ 465 (956)
T PRK04914 387 AANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLP-EQYQTAIKVSLEARARDMLYPEQIY 465 (956)
T ss_pred hhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCC-HHHHHHHHHhHHHHHHhhcCHHHHH
Confidence 000000 01100 0000111 11110
Q ss_pred -------------HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHh
Q 048746 324 -------------AAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIF 390 (755)
Q Consensus 324 -------------~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~ 390 (755)
..+..+..+.......++||||+++..+..+.+.|... .++.+..+||+|++.+|.+++
T Consensus 466 ~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~--------~Gi~~~~ihG~~s~~eR~~~~ 537 (956)
T PRK04914 466 QEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER--------EGIRAAVFHEGMSIIERDRAA 537 (956)
T ss_pred HHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc--------cCeeEEEEECCCCHHHHHHHH
Confidence 11223444444445689999999999999999999643 247888999999999999999
Q ss_pred CCCCCC--CcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC
Q 048746 391 EPTPEG--ARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP 461 (755)
Q Consensus 391 ~~f~~g--~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~ 461 (755)
+.|+++ ..+|||||+++++|+|++.+++||+||+ |.++..|.||+||+||.|.
T Consensus 538 ~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDl------------------P~nP~~~eQRIGR~~RiGQ 592 (956)
T PRK04914 538 AYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDL------------------PFNPDLLEQRIGRLDRIGQ 592 (956)
T ss_pred HHHhcCCCCccEEEechhhccCCCcccccEEEEecC------------------CCCHHHHHHHhcccccCCC
Confidence 999874 6999999999999999999999999999 9999999999999999995
No 103
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=1.7e-21 Score=223.34 Aligned_cols=140 Identities=24% Similarity=0.198 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEE
Q 048746 321 YIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKV 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~v 400 (755)
+..+.+..+...|. .+.|+||||+|.+.++.++..|.+.+ +....+||.+.+.++..+.+.|++|. |
T Consensus 429 k~~av~~~i~~~~~--~g~PVLVgt~Sie~sE~ls~~L~~~g---------i~h~vLnak~~q~Ea~iia~Ag~~G~--V 495 (896)
T PRK13104 429 KFQAIIEDVRECGV--RKQPVLVGTVSIEASEFLSQLLKKEN---------IKHQVLNAKFHEKEAQIIAEAGRPGA--V 495 (896)
T ss_pred HHHHHHHHHHHHHh--CCCCEEEEeCcHHHHHHHHHHHHHcC---------CCeEeecCCCChHHHHHHHhCCCCCc--E
Confidence 33445555555444 46899999999999999999999854 77888999999999999999999994 9
Q ss_pred EEeCCcccccCcCCCe---eE-EEeC--CCc-------------ccccccCCCCcccccc-cccCHHhHHhhhcccCCCC
Q 048746 401 VLATNIAETSLTIDGI---KY-VIDP--GFS-------------KVKSYNPRTGMESLLV-HPISKASAMQRAGRSGRTG 460 (755)
Q Consensus 401 lvaT~i~~~Gidip~v---~~-VId~--g~~-------------k~~~~~~~~~~~~l~~-~p~s~~~~~QR~GRaGR~g 460 (755)
+||||+|+||+||.== .+ +.+. +.. ....--...|+..+.+ .+.|.--=.|-.|||||.|
T Consensus 496 tIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQG 575 (896)
T PRK13104 496 TIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQG 575 (896)
T ss_pred EEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCC
Confidence 9999999999999610 00 0000 000 0000001123333333 3677777799999999999
Q ss_pred -CCEEEEeccCccc
Q 048746 461 -PGKCFRLYTLHNY 473 (755)
Q Consensus 461 -~G~~~~l~~~~~~ 473 (755)
||.+-.+.+-++.
T Consensus 576 DPGss~f~lSleD~ 589 (896)
T PRK13104 576 DPGSSRFYLSLEDN 589 (896)
T ss_pred CCCceEEEEEcCcH
Confidence 7988777775543
No 104
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=8.7e-21 Score=217.48 Aligned_cols=323 Identities=19% Similarity=0.170 Sum_probs=190.2
Q ss_pred cCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCcccc
Q 048746 128 KTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGH 205 (755)
Q Consensus 128 ~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~ 205 (755)
+..| ++.|--..-++..| -|..++||+||| +.+|.++... .+..+-|++|++.||.|.++.+...+ ..+|.
T Consensus 79 g~~~-~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL---~G~~V~IvTpn~yLA~rd~e~~~~l~-~~LGl 151 (830)
T PRK12904 79 GMRH-FDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNAL---TGKGVHVVTVNDYLAKRDAEWMGPLY-EFLGL 151 (830)
T ss_pred CCCC-CccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHH---cCCCEEEEecCHHHHHHHHHHHHHHH-hhcCC
Confidence 4444 55554444445455 489999999999 4455544332 23457799999999999998887743 33444
Q ss_pred EEeeeeecc----ccCCCCceEEEeCcHHH-HHHHhCCC-------CCCCCCceEeecccccCC-c--------------
Q 048746 206 EVGYSIRFE----DCTSEKTILKYMTDGML-LREILSEP-------NLESYSVLMVDEAHERTL-S-------------- 258 (755)
Q Consensus 206 ~vg~~~~~~----~~~~~~~~I~v~T~g~L-l~~l~~~~-------~l~~~~~vIiDEaHer~~-~-------------- 258 (755)
.+|...... ....-.++|+|+|++.| .+.|.... .+..+.++|||||| +++ +
T Consensus 152 sv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaD-siLIDeArtpLiiSg~~~~ 230 (830)
T PRK12904 152 SVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVD-SILIDEARTPLIISGPAED 230 (830)
T ss_pred eEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechh-hheeccCCCceeeECCCCc
Confidence 444333221 11123589999999999 77775443 36788999999999 111 0
Q ss_pred -cchHHHHHHHHHhcCC--------C------------------------------------------------------
Q 048746 259 -TDILFGLLKDLIKFRS--------D------------------------------------------------------ 275 (755)
Q Consensus 259 -~d~~~~~l~~~~~~~~--------~------------------------------------------------------ 275 (755)
.+......+.+..... .
T Consensus 231 ~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 310 (830)
T PRK12904 231 SSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVK 310 (830)
T ss_pred ccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 0111111111111110 0
Q ss_pred -------------------------------------------------------cEEEEeccCC--CHHHHHhhhCCCC
Q 048746 276 -------------------------------------------------------LKLLISSATL--DAEKFSDYFGSAP 298 (755)
Q Consensus 276 -------------------------------------------------------~~~il~SAT~--~~~~l~~~~~~~~ 298 (755)
.++.+||.|. ..+.|.+.++ -+
T Consensus 311 dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~-l~ 389 (830)
T PRK12904 311 DGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYN-LD 389 (830)
T ss_pred CCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhC-CC
Confidence 1333444444 1122333222 22
Q ss_pred EEEecCccccceEEEec----CCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEE
Q 048746 299 IFKIPGRRYPVEIHYTK----APEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELII 374 (755)
Q Consensus 299 ~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v 374 (755)
++.+|... |+.-.-.+ ....++....+..+...+ ..+.++||||+|.+.++.++..|.+.+ +..
T Consensus 390 vv~IPtnk-p~~r~d~~d~i~~t~~~K~~aI~~~I~~~~--~~grpVLIft~Si~~se~Ls~~L~~~g---------i~~ 457 (830)
T PRK12904 390 VVVIPTNR-PMIRIDHPDLIYKTEKEKFDAVVEDIKERH--KKGQPVLVGTVSIEKSELLSKLLKKAG---------IPH 457 (830)
T ss_pred EEEcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHCC---------Cce
Confidence 33333321 11100000 011223343444443333 346799999999999999999999853 777
Q ss_pred EeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCe---eEEEeCCCcc----------------cccccCCCC
Q 048746 375 CPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGI---KYVIDPGFSK----------------VKSYNPRTG 435 (755)
Q Consensus 375 ~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v---~~VId~g~~k----------------~~~~~~~~~ 435 (755)
..+||. +.+|+..+..|+.+...|+||||+|+||+||+== .+.....+.. ...--...|
T Consensus 458 ~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GG 535 (830)
T PRK12904 458 NVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGG 535 (830)
T ss_pred EeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCC
Confidence 889995 7899999999999999999999999999999721 0000000000 000001123
Q ss_pred cccccc-cccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 436 MESLLV-HPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 436 ~~~l~~-~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
+..+.+ .+.|.--=.|-.|||||.| ||.+-.+.+-++.
T Consensus 536 LhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 536 LHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred CEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 333333 2788888899999999999 7988777775543
No 105
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=7e-21 Score=217.40 Aligned_cols=108 Identities=28% Similarity=0.297 Sum_probs=98.0
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcC---
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTI--- 413 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidi--- 413 (755)
.+.++||||+|+..++.++..|.+.+ +....+||.+...++..+.+.+++|. |+||||+|+||.||
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~g---------i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~ 507 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEAG---------IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLG 507 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHCC---------CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCC
Confidence 47899999999999999999999853 67778999999888888888888876 99999999999999
Q ss_pred CCee-----EEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 414 DGIK-----YVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 414 p~v~-----~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
++|. +||++.+ |.|...+.||+|||||.| ||.+..+++.++.
T Consensus 508 ~~V~~~GGLhVI~te~------------------pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 508 PGVKELGGLAVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred cchhhhCCcEEEeeec------------------CCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 4899 9999999 999999999999999999 6999999887653
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.85 E-value=1.6e-20 Score=220.74 Aligned_cols=308 Identities=20% Similarity=0.183 Sum_probs=184.6
Q ss_pred CChHHHHHHHHHHHc---CC-eEEEEccCCCchhccHHHHHHH--hc-ccCCCccccCccHHHHHHHHHHHHHHHhCCcc
Q 048746 131 PIYPYRDELLQAVNE---YQ-VLVIVGETGSGKTTQIPQYLHE--AG-YTKQGKVGCTQPRRVAAMSVAARVSQEMGVKL 203 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~~---~~-~vii~apTGsGKT~~ip~~l~~--~~-~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~ 203 (755)
+.++.|..++..+.. .. .+++.||||+|||++...+.+. .. .....+++++.|+|.++.++++++....+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 347888888888654 35 8999999999999443333222 11 12356999999999999999999987654322
Q ss_pred --cc-EEeeeeec---cc-c-------CC-----CCceEEEeCcHHHHHHHhCCCCC-----CCCCceEeecccccCCcc
Q 048746 204 --GH-EVGYSIRF---ED-C-------TS-----EKTILKYMTDGMLLREILSEPNL-----ESYSVLMVDEAHERTLST 259 (755)
Q Consensus 204 --g~-~vg~~~~~---~~-~-------~~-----~~~~I~v~T~g~Ll~~l~~~~~l-----~~~~~vIiDEaHer~~~~ 259 (755)
+. ..|..... +. . .. .-..+.++|+-..+......... -..+++|+||+| ++..
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h--~~~~ 352 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH--LYAD 352 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHH--hhcc
Confidence 22 12211100 00 0 00 01122233333222211111111 134789999999 4444
Q ss_pred c-hHHHHHHHHHh-cCCCcEEEEeccCCCHH---HHHhhhCCCCEEEecCccccceEE--EecCCccchHHHH--HHHHH
Q 048746 260 D-ILFGLLKDLIK-FRSDLKLLISSATLDAE---KFSDYFGSAPIFKIPGRRYPVEIH--YTKAPEADYIDAA--IVTVL 330 (755)
Q Consensus 260 d-~~~~~l~~~~~-~~~~~~~il~SAT~~~~---~l~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~--~~~~~ 330 (755)
+ .+..++..+.. ..-+.++|+||||++.. .+.++++....+.......+..-. .......+..+.. .....
T Consensus 353 ~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 432 (733)
T COG1203 353 ETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIEL 432 (733)
T ss_pred cchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhc
Confidence 4 22222222222 23478899999999653 455555433222221110000000 0000001111110 00111
Q ss_pred HHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCC----CCCCcEEEEeCCc
Q 048746 331 QIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPT----PEGARKVVLATNI 406 (755)
Q Consensus 331 ~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f----~~g~~~vlvaT~i 406 (755)
.......+++++|.|||...+.+++..|+... ..++.+||.+...+|.+.++.. +.+...|+|||++
T Consensus 433 ~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~---------~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQV 503 (733)
T COG1203 433 ISEEVKEGKKVLVIVNTVDRAIELYEKLKEKG---------PKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQV 503 (733)
T ss_pred chhhhccCCcEEEEEecHHHHHHHHHHHHhcC---------CCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeE
Confidence 11223346899999999999999999999854 2689999999999998877632 4567899999999
Q ss_pred ccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC--C-CEEEEeccC
Q 048746 407 AETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG--P-GKCFRLYTL 470 (755)
Q Consensus 407 ~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g--~-G~~~~l~~~ 470 (755)
.|.||||+ .+++| +.+.+..+.+||+||++|.| . |..|..-..
T Consensus 504 IEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 504 IEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred EEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeEeecc
Confidence 99999998 66666 45789999999999999999 3 555554443
No 107
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.84 E-value=3.7e-21 Score=173.55 Aligned_cols=101 Identities=48% Similarity=0.812 Sum_probs=81.2
Q ss_pred HHHHHHHHhccccccCC-------------CCcHHHHHHHHHhccccceeeeccCCCeeeeecCceEEECCCCCCccCCC
Q 048746 647 DQLEGLLERVEIEVTSN-------------LNDLDAIKKAITSGFFPHSAKLQKNGSYWTVKHPQRVHIHPSSGLAQVLP 713 (755)
Q Consensus 647 ~qL~~~l~~~~~~~~~~-------------~~~~~~i~~~l~~g~~~nvA~~~~~g~y~~~~~~~~v~iHPsS~l~~~~p 713 (755)
+||.++|++.++...+. ..+.+.|++|||+|||+|+|++.+++.|+++.++..|+|||+|++++.+|
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~~~p 80 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFKKPP 80 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTTTT-
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCcccccccc
Confidence 58888998887753321 13457899999999999999999889999998888999999999999999
Q ss_pred ceEEEEeeecChhhhhhhccccCHHHHHhHcccc
Q 048746 714 RWVVYHELVLTTKEYMRQVTELKPEWLVEIAPHY 747 (755)
Q Consensus 714 ~~vvy~el~~t~k~yir~vt~I~~~wL~~~ap~~ 747 (755)
+||||+|++.|+|.|||+||+|+|+||.+++|+|
T Consensus 81 ~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~~~ 114 (114)
T PF07717_consen 81 KWVVYHELVRTSKPYMRDVTAISPEWLLLFAPHY 114 (114)
T ss_dssp SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT
T ss_pred ccchhhhheecCCcEEEECcCCCHHHHHHHcccC
Confidence 9999999999999999999999999999999986
No 108
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.83 E-value=1.8e-19 Score=200.91 Aligned_cols=160 Identities=23% Similarity=0.213 Sum_probs=113.3
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhc-ccCCCccccCccHHHHHHHHHHHHHHHhCCcc---cc
Q 048746 130 LPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAG-YTKQGKVGCTQPRRVAAMSVAARVSQEMGVKL---GH 205 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~---g~ 205 (755)
-| ..+|.+.+..+..+..++|+|||.+|||++-+..+.... ....+.++++.|+++|+.|++..+...++.+. |.
T Consensus 511 ~P-d~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 511 CP-DEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred CC-cHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 45 799999999999999999999999999976555443321 12346889999999999999988877664322 21
Q ss_pred E-EeeeeeccccCCCCceEEEeCcHHHHHHHhCCC----CCCCCCceEeecccccCCccc--hHHHHHHHHHhcCCCcEE
Q 048746 206 E-VGYSIRFEDCTSEKTILKYMTDGMLLREILSEP----NLESYSVLMVDEAHERTLSTD--ILFGLLKDLIKFRSDLKL 278 (755)
Q Consensus 206 ~-vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~----~l~~~~~vIiDEaHer~~~~d--~~~~~l~~~~~~~~~~~~ 278 (755)
. .|--.+.-....-+++|+|+-|+.+-..|...| +..++++||+||+|.-+-..| +++.++.. -.+.+
T Consensus 590 sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l-----i~CP~ 664 (1330)
T KOG0949|consen 590 SLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL-----IPCPF 664 (1330)
T ss_pred hhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh-----cCCCe
Confidence 1 111111111123478999999999988887743 688999999999994332222 22222222 24679
Q ss_pred EEeccCC-CHHHHHhhhC
Q 048746 279 LISSATL-DAEKFSDYFG 295 (755)
Q Consensus 279 il~SAT~-~~~~l~~~~~ 295 (755)
+++|||+ |+..+.+|+.
T Consensus 665 L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 665 LVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred eEEecccCCHHHHHHHHH
Confidence 9999999 8999999875
No 109
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=7e-19 Score=201.46 Aligned_cols=136 Identities=18% Similarity=0.164 Sum_probs=98.6
Q ss_pred ccchHHHHHHH-----HHhcCCC--ChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccH
Q 048746 114 SKEKSALEMLQ-----EERKTLP--IYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPR 184 (755)
Q Consensus 114 ~~~~~~~~~l~-----~~~~~lP--l~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~ 184 (755)
.+.....+.+. ..++..| ++|+|.++++.+..++++|+.++||+||| +.+|.+.... . +..++|++|+
T Consensus 68 al~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL--~-g~~v~IVTpT 144 (970)
T PRK12899 68 GVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNAL--T-GKPVHLVTVN 144 (970)
T ss_pred CCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHh--h-cCCeEEEeCC
Confidence 44555555555 6789999 99999999999999999999999999999 5566554322 2 2358888999
Q ss_pred HHHHHHHHHHHHHHhCCccccEEeeeeeccc----cCCCCceEEEeCcHHH-HHHHhCCC-CC-------CCCCceEeec
Q 048746 185 RVAAMSVAARVSQEMGVKLGHEVGYSIRFED----CTSEKTILKYMTDGML-LREILSEP-NL-------ESYSVLMVDE 251 (755)
Q Consensus 185 r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~----~~~~~~~I~v~T~g~L-l~~l~~~~-~l-------~~~~~vIiDE 251 (755)
|+||.|+++.+... ...+|..+|..+...+ ...-.++|+|+|||+| ++++.... .+ ..+.++||||
T Consensus 145 rELA~Qdae~m~~L-~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDE 223 (970)
T PRK12899 145 DYLAQRDCEWVGSV-LRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDE 223 (970)
T ss_pred HHHHHHHHHHHHHH-HhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEec
Confidence 99999999877663 2233444443222211 1123589999999999 88887652 33 3568999999
Q ss_pred cc
Q 048746 252 AH 253 (755)
Q Consensus 252 aH 253 (755)
||
T Consensus 224 AD 225 (970)
T PRK12899 224 VD 225 (970)
T ss_pred hh
Confidence 99
No 110
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.81 E-value=3.3e-19 Score=178.64 Aligned_cols=175 Identities=19% Similarity=0.118 Sum_probs=126.4
Q ss_pred CCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHh-cc---cCCCccccCccHH
Q 048746 110 LPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEA-GY---TKQGKVGCTQPRR 185 (755)
Q Consensus 110 f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~-~~---~~~~~ilv~~P~r 185 (755)
|++..+++.+.+.+.+.+...| +++|.++++.+.+++++++++|||+|||......+... .. ..+++++|++|++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~-~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKP-TPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCH
Confidence 5677889999999999888777 99999999999999999999999999994422222222 11 2356899999999
Q ss_pred HHHHHHHHHHHHHhC---CccccEEeeeeecc--ccCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCCcc
Q 048746 186 VAAMSVAARVSQEMG---VKLGHEVGYSIRFE--DCTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTLST 259 (755)
Q Consensus 186 ~la~q~a~~~~~~~~---~~~g~~vg~~~~~~--~~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~~~ 259 (755)
+|+.|++..+..... ..+....|.....+ .....+.+|+|+||+.|.+.+.... .+.+++++|+||+| ...+.
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h-~~~~~ 158 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEAD-RMLDM 158 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChH-Hhhcc
Confidence 999999988877432 22222222111000 1112367899999999999886554 67889999999999 44444
Q ss_pred chHHHHHHHHHhcCCCcEEEEeccCCC
Q 048746 260 DILFGLLKDLIKFRSDLKLLISSATLD 286 (755)
Q Consensus 260 d~~~~~l~~~~~~~~~~~~il~SAT~~ 286 (755)
++...+...+....++.+++++|||++
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 159 GFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 455444444445666899999999995
No 111
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=7.8e-19 Score=200.90 Aligned_cols=139 Identities=19% Similarity=0.163 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEE
Q 048746 321 YIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKV 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~v 400 (755)
+..+.+..+..+|. .+.++||||+|.+..+.++..|...+ +....+|+.+++.++..+.+.|++|. |
T Consensus 434 K~~Aii~ei~~~~~--~GrpVLV~t~sv~~se~ls~~L~~~g---------i~~~vLnak~~~~Ea~ii~~Ag~~G~--V 500 (908)
T PRK13107 434 KYQAIIKDIKDCRE--RGQPVLVGTVSIEQSELLARLMVKEK---------IPHEVLNAKFHEREAEIVAQAGRTGA--V 500 (908)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEeCcHHHHHHHHHHHHHCC---------CCeEeccCcccHHHHHHHHhCCCCCc--E
Confidence 34455556666554 36799999999999999999999853 67778999999999999999999998 9
Q ss_pred EEeCCcccccCcCCCe---eEEEeCCCcc----------------cccccCCCCcccccc-cccCHHhHHhhhcccCCCC
Q 048746 401 VLATNIAETSLTIDGI---KYVIDPGFSK----------------VKSYNPRTGMESLLV-HPISKASAMQRAGRSGRTG 460 (755)
Q Consensus 401 lvaT~i~~~Gidip~v---~~VId~g~~k----------------~~~~~~~~~~~~l~~-~p~s~~~~~QR~GRaGR~g 460 (755)
+||||+|+||.||.== .+-+- -+.. ...--...|+..+.+ .+.|.--=.|-.|||||.|
T Consensus 501 tIATnmAGRGTDIkLggn~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQG 579 (908)
T PRK13107 501 TIATNMAGRGTDIVLGGNWNMEIE-ALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQG 579 (908)
T ss_pred EEecCCcCCCcceecCCchHHhhh-hhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCC
Confidence 9999999999999610 00000 0000 000001122222222 2677777789999999999
Q ss_pred -CCEEEEeccCccc
Q 048746 461 -PGKCFRLYTLHNY 473 (755)
Q Consensus 461 -~G~~~~l~~~~~~ 473 (755)
||.+-.+.+-++.
T Consensus 580 DPGss~f~lSlED~ 593 (908)
T PRK13107 580 DAGSSRFYLSMEDS 593 (908)
T ss_pred CCCceeEEEEeCcH
Confidence 7988877776543
No 112
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.75 E-value=1.6e-17 Score=189.16 Aligned_cols=315 Identities=16% Similarity=0.196 Sum_probs=204.5
Q ss_pred CCCChHHHHHHHHHHHcC----CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccc
Q 048746 129 TLPIYPYRDELLQAVNEY----QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLG 204 (755)
Q Consensus 129 ~lPl~~~Q~~~l~~i~~~----~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g 204 (755)
.+.+.+-|+.+.+.+... ...++.|.||||||-...+++... +..+..+|+++|-.+|..|+..++...+|.+++
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~-L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~ 274 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKV-LAQGKQVLVLVPEIALTPQLLARFKARFGAKVA 274 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHH-HHcCCEEEEEeccccchHHHHHHHHHHhCCChh
Confidence 356789999999998665 789999999999995544554443 445678999999999999999999999998876
Q ss_pred cEEeeeeec------cccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccch---H-HHHHHHHHhcCC
Q 048746 205 HEVGYSIRF------EDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDI---L-FGLLKDLIKFRS 274 (755)
Q Consensus 205 ~~vg~~~~~------~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~---~-~~~l~~~~~~~~ 274 (755)
.....-... ....++..+|+++|-..+. ..+.++++|||||=|+-+...+- . .--+..+.....
T Consensus 275 vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~ 348 (730)
T COG1198 275 VLHSGLSPGERYRVWRRARRGEARVVIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKE 348 (730)
T ss_pred hhcccCChHHHHHHHHHHhcCCceEEEEechhhc------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHh
Confidence 554421111 1224467899999976653 25789999999999955543321 0 011122222345
Q ss_pred CcEEEEeccCCCHHHHHhhhCC-CCEEEecCccc---cceEEEecCCc--cc----hHHHHHHHHHHHHhhCCCCCEEEE
Q 048746 275 DLKLLISSATLDAEKFSDYFGS-APIFKIPGRRY---PVEIHYTKAPE--AD----YIDAAIVTVLQIHVTQSPGDILVF 344 (755)
Q Consensus 275 ~~~~il~SAT~~~~~l~~~~~~-~~~~~~~~~~~---~v~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~iLVF 344 (755)
+.++|+-|||+..+.+..-..+ -..+.+..|.. +..+....... .. .-...+..+.+. ...+.++|+|
T Consensus 349 ~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~--l~~geQ~llf 426 (730)
T COG1198 349 NAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKT--LERGEQVLLF 426 (730)
T ss_pred CCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHH--HhcCCeEEEE
Confidence 7899999999988877766443 22334444422 33333332211 11 112222222221 1235677888
Q ss_pred cCCHH------------------------------------------------------------HHHHHHHHHHHhhcc
Q 048746 345 LTGQE------------------------------------------------------------EIETADEILKHRTRG 364 (755)
Q Consensus 345 ~~~~~------------------------------------------------------------~~~~l~~~L~~~~~~ 364 (755)
+|.+. .++++.+.|...+
T Consensus 427 lnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F-- 504 (730)
T COG1198 427 LNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF-- 504 (730)
T ss_pred EccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC--
Confidence 76543 2445555555544
Q ss_pred cCCCCCceEEEeccCCCCHH--HHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCccccccc
Q 048746 365 LGSKIAELIICPIYANLPTE--LQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVH 442 (755)
Q Consensus 365 ~~~~~~~~~v~~lh~~l~~~--~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~ 442 (755)
++..+..+-++.... .-+..+..|.+|+.+|||.|.+++.|.|+|+|+.|.-.+. |.-.+...+...
T Consensus 505 -----P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~a------D~~L~~~DfRA~ 573 (730)
T COG1198 505 -----PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDA------DTGLGSPDFRAS 573 (730)
T ss_pred -----CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEec------hhhhcCCCcchH
Confidence 456777777776543 3456788899999999999999999999999998742222 112233333333
Q ss_pred ccCHHhHHhhhcccCCCC-CCEEE
Q 048746 443 PISKASAMQRAGRSGRTG-PGKCF 465 (755)
Q Consensus 443 p~s~~~~~QR~GRaGR~g-~G~~~ 465 (755)
-....-+.|=+|||||.+ +|.++
T Consensus 574 Er~fqll~QvaGRAgR~~~~G~Vv 597 (730)
T COG1198 574 ERTFQLLMQVAGRAGRAGKPGEVV 597 (730)
T ss_pred HHHHHHHHHHHhhhccCCCCCeEE
Confidence 456677899999999985 67654
No 113
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.74 E-value=3.6e-18 Score=165.63 Aligned_cols=156 Identities=22% Similarity=0.179 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhccc-CCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeee
Q 048746 133 YPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYT-KQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSI 211 (755)
Q Consensus 133 ~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~ 211 (755)
+++|.++++.+.+++++++.||||||||+.+...++..... +..++++++|+++|+.|+.+++...++. .+..+....
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccc-ccccccccc
Confidence 58999999999999999999999999996666555443222 3348999999999999999999886654 111111111
Q ss_pred ecc-------ccCCCCceEEEeCcHHHHHHHhCC-CCCCCCCceEeecccccCCccchHHHHHHHHHh--cCCCcEEEEe
Q 048746 212 RFE-------DCTSEKTILKYMTDGMLLREILSE-PNLESYSVLMVDEAHERTLSTDILFGLLKDLIK--FRSDLKLLIS 281 (755)
Q Consensus 212 ~~~-------~~~~~~~~I~v~T~g~Ll~~l~~~-~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~--~~~~~~~il~ 281 (755)
... ......++|+|+||+.|++.+... ..+.++++|||||+|... ...+...+...+.. ..++.++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~-~~~~~~~~~~i~~~~~~~~~~~~i~~ 158 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLS-DETFRAMLKSILRRLKRFKNIQIILL 158 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHH-HTTHHHHHHHHHHHSHTTTTSEEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccc-cccHHHHHHHHHHHhcCCCCCcEEEE
Confidence 111 111246899999999999998763 256679999999999322 22332222222222 2346899999
Q ss_pred ccCCCHHHHH
Q 048746 282 SATLDAEKFS 291 (755)
Q Consensus 282 SAT~~~~~l~ 291 (755)
|||+. ..+.
T Consensus 159 SAT~~-~~~~ 167 (169)
T PF00270_consen 159 SATLP-SNVE 167 (169)
T ss_dssp ESSST-HHHH
T ss_pred eeCCC-hhHh
Confidence 99997 5443
No 114
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.74 E-value=1.2e-16 Score=178.28 Aligned_cols=295 Identities=14% Similarity=0.130 Sum_probs=180.3
Q ss_pred hHHHHHHHHHH----HcC-CeEEEEccCCCchhccHHHHHHHhccc-CCCccccCccHHHHHHHHHHHHHHHhCCccccE
Q 048746 133 YPYRDELLQAV----NEY-QVLVIVGETGSGKTTQIPQYLHEAGYT-KQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHE 206 (755)
Q Consensus 133 ~~~Q~~~l~~i----~~~-~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~ 206 (755)
..+|..+|..+ .+| +.+++++.||+|||..+.+++...... .-++||+++-|++|+.|.+..+...+-. +..
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~--~~~ 244 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF--GTK 244 (875)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC--ccc
Confidence 78898888764 333 569999999999996655555443221 2358999999999999999887765421 111
Q ss_pred EeeeeeccccCCCCceEEEeCcHHHHHHHhCC-C-----CCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEE
Q 048746 207 VGYSIRFEDCTSEKTILKYMTDGMLLREILSE-P-----NLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLI 280 (755)
Q Consensus 207 vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~-~-----~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il 280 (755)
+- .-.+......++|.++|...+...+... . ....+++||||||| |+.....- +++.-+.. . .++
T Consensus 245 ~n--~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-~I~dYFdA----~-~~g 315 (875)
T COG4096 245 MN--KIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-SILDYFDA----A-TQG 315 (875)
T ss_pred ee--eeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-HHHHHHHH----H-HHh
Confidence 11 1112223336899999999988877544 2 23458999999999 88766543 22222222 2 344
Q ss_pred eccCCCHH---HHHhhhCCCCEEEe------------cCccccceEEE-------ecC-------------Ccc------
Q 048746 281 SSATLDAE---KFSDYFGSAPIFKI------------PGRRYPVEIHY-------TKA-------------PEA------ 319 (755)
Q Consensus 281 ~SAT~~~~---~l~~~~~~~~~~~~------------~~~~~~v~~~~-------~~~-------------~~~------ 319 (755)
++||+... .--.||.+.|+..- +-+...+...+ ... ...
T Consensus 316 LTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d 395 (875)
T COG4096 316 LTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARD 395 (875)
T ss_pred hccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccc
Confidence 59999321 33456755554321 11111111111 000 000
Q ss_pred --------chHHHHHHHHHHHHhh--C--CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHH
Q 048746 320 --------DYIDAAIVTVLQIHVT--Q--SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQA 387 (755)
Q Consensus 320 --------~~~~~~~~~~~~~~~~--~--~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 387 (755)
...+.....+...... . ..+++||||.+..+++.+...|....+.. .+--+..+.|+-...+ .
T Consensus 396 ~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~----~~~~a~~IT~d~~~~q-~ 470 (875)
T COG4096 396 FDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEY----NGRYAMKITGDAEQAQ-A 470 (875)
T ss_pred cchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccc----cCceEEEEeccchhhH-H
Confidence 0011122222222222 1 14799999999999999999999876432 2234555666544332 2
Q ss_pred HHhCCC-CCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC
Q 048746 388 KIFEPT-PEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP 461 (755)
Q Consensus 388 ~i~~~f-~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~ 461 (755)
.+-+-+ ++.-.+|.++.+++.+|||+|.|..+|-.-. -.|+.-|.||+||+-|..+
T Consensus 471 ~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~------------------VrSktkF~QMvGRGTRl~~ 527 (875)
T COG4096 471 LIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRK------------------VRSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred HHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhh------------------hhhHHHHHHHhcCccccCc
Confidence 222211 3445789999999999999999988873322 5899999999999999874
No 115
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.73 E-value=1e-16 Score=186.74 Aligned_cols=305 Identities=14% Similarity=0.068 Sum_probs=175.6
Q ss_pred CCCChHHHHHHHHHH----Hc------CCeEEEEccCCCchhccHHHHHHHh-cccCCCccccCccHHHHHHHHHHHHHH
Q 048746 129 TLPIYPYRDELLQAV----NE------YQVLVIVGETGSGKTTQIPQYLHEA-GYTKQGKVGCTQPRRVAAMSVAARVSQ 197 (755)
Q Consensus 129 ~lPl~~~Q~~~l~~i----~~------~~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~ilv~~P~r~la~q~a~~~~~ 197 (755)
..| ..+|..++..+ .+ .+..++..+||||||..+..++... ......+|++++||++|..|+.+.+..
T Consensus 237 ~~~-r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 237 PYQ-RYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eeh-HHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHh
Confidence 445 77888888774 22 3579999999999994443332221 123346899999999999999999887
Q ss_pred HhCCccccEEeeeeec-cccCCCCceEEEeCcHHHHHHHhCC---CCCCCC-CceEeecccccCCccchHHHHHHHHHhc
Q 048746 198 EMGVKLGHEVGYSIRF-EDCTSEKTILKYMTDGMLLREILSE---PNLESY-SVLMVDEAHERTLSTDILFGLLKDLIKF 272 (755)
Q Consensus 198 ~~~~~~g~~vg~~~~~-~~~~~~~~~I~v~T~g~Ll~~l~~~---~~l~~~-~~vIiDEaHer~~~~d~~~~~l~~~~~~ 272 (755)
.....+ ..++..-.. .........|+|+|.+.+.+.+... ...... -+||+|||| |+....+. +.+...
T Consensus 316 ~~~~~~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~~----~~l~~~ 389 (667)
T TIGR00348 316 LQKDCA-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGELA----KNLKKA 389 (667)
T ss_pred hCCCCC-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHHH----HHHHhh
Confidence 432111 111100000 0012234689999999997644221 111111 279999999 77655432 333345
Q ss_pred CCCcEEEEeccCCCH---HHHHhhhC---CCCEEEec-----CccccceEEEecCCcc-----ch---------------
Q 048746 273 RSDLKLLISSATLDA---EKFSDYFG---SAPIFKIP-----GRRYPVEIHYTKAPEA-----DY--------------- 321 (755)
Q Consensus 273 ~~~~~~il~SAT~~~---~~l~~~~~---~~~~~~~~-----~~~~~v~~~~~~~~~~-----~~--------------- 321 (755)
.|+..+++||||+-. ..-...|+ +.++.... ...+.+.+.|...... +.
T Consensus 390 ~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 469 (667)
T TIGR00348 390 LKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPER 469 (667)
T ss_pred CCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhcc
Confidence 577899999999921 11112232 12221111 0112222333221110 00
Q ss_pred -------------------------HHHHHHHHHHHH---hhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceE
Q 048746 322 -------------------------IDAAIVTVLQIH---VTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELI 373 (755)
Q Consensus 322 -------------------------~~~~~~~~~~~~---~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 373 (755)
+......+..-. ....+++.+|||.++..|..+.+.|.+...... +..
T Consensus 470 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~----~~~ 545 (667)
T TIGR00348 470 IREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF----EAS 545 (667)
T ss_pred ccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc----CCe
Confidence 000011111111 111248999999999999999999877543210 122
Q ss_pred EEeccCCCCHH---------------------HHHHHhCCCCC-CCcEEEEeCCcccccCcCCCeeEEEeCCCccccccc
Q 048746 374 ICPIYANLPTE---------------------LQAKIFEPTPE-GARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYN 431 (755)
Q Consensus 374 v~~lh~~l~~~---------------------~r~~i~~~f~~-g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~ 431 (755)
.+.++++.+.+ ....+.+.|++ +..+|||.++.+.+|+|.|.+.+++- +.
T Consensus 546 ~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyl-dK------- 617 (667)
T TIGR00348 546 AIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYL-DK------- 617 (667)
T ss_pred eEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEE-ec-------
Confidence 33344432221 12356677755 67899999999999999999988771 22
Q ss_pred CCCCcccccccccCHHhHHhhhcccCCC-CCCE
Q 048746 432 PRTGMESLLVHPISKASAMQRAGRSGRT-GPGK 463 (755)
Q Consensus 432 ~~~~~~~l~~~p~s~~~~~QR~GRaGR~-g~G~ 463 (755)
|.....++|.+||+-|. .+|+
T Consensus 618 -----------plk~h~LlQai~R~nR~~~~~K 639 (667)
T TIGR00348 618 -----------PLKYHGLLQAIARTNRIDGKDK 639 (667)
T ss_pred -----------cccccHHHHHHHHhccccCCCC
Confidence 55556789999999994 5443
No 116
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.73 E-value=4.5e-17 Score=172.94 Aligned_cols=280 Identities=23% Similarity=0.267 Sum_probs=182.3
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEE
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILK 224 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~ 224 (755)
..+.++-+|||.||||+-+.+-+.+. .+-++.-|.|.||.+++.++.+ .|.++....|-..++.......+..+
T Consensus 190 ~RkIi~H~GPTNSGKTy~ALqrl~~a-----ksGvycGPLrLLA~EV~~r~na-~gipCdL~TGeE~~~~~~~~~~a~hv 263 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRALQRLKSA-----KSGVYCGPLRLLAHEVYDRLNA-LGIPCDLLTGEERRFVLDNGNPAQHV 263 (700)
T ss_pred hheEEEEeCCCCCchhHHHHHHHhhh-----ccceecchHHHHHHHHHHHhhh-cCCCccccccceeeecCCCCCcccce
Confidence 45678899999999998777666544 3567888999999999999987 78888777776666655444556777
Q ss_pred EeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcC-CCcEEEEeccCCC-HHHHHhhhCCCCEEEe
Q 048746 225 YMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFR-SDLKLLISSATLD-AEKFSDYFGSAPIFKI 302 (755)
Q Consensus 225 v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~-~~~~~il~SAT~~-~~~l~~~~~~~~~~~~ 302 (755)
-||.+|. ..-..|++.||||++ .+-+..-.-+.-+.++... ..+.+.+=-|-++ +..+.+--++.-.+..
T Consensus 264 ScTVEM~-------sv~~~yeVAViDEIQ-mm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k~TGd~vev~~ 335 (700)
T KOG0953|consen 264 SCTVEMV-------SVNTPYEVAVIDEIQ-MMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILKMTGDDVEVRE 335 (700)
T ss_pred EEEEEEe-------ecCCceEEEEehhHH-hhcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHhhcCCeeEEEe
Confidence 8888876 234568999999999 2322221111222222111 1122222112221 1222222222211111
Q ss_pred cCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCC
Q 048746 303 PGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLP 382 (755)
Q Consensus 303 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~ 382 (755)
-.|..|+.+ .+ .++.-...-.+|+++|- -|+++|-.+...+.+.+ +..+..+||+||
T Consensus 336 YeRl~pL~v----------~~----~~~~sl~nlk~GDCvV~-FSkk~I~~~k~kIE~~g--------~~k~aVIYGsLP 392 (700)
T KOG0953|consen 336 YERLSPLVV----------EE----TALGSLSNLKPGDCVVA-FSKKDIFTVKKKIEKAG--------NHKCAVIYGSLP 392 (700)
T ss_pred ecccCccee----------hh----hhhhhhccCCCCCeEEE-eehhhHHHHHHHHHHhc--------CcceEEEecCCC
Confidence 122222211 11 12222233346777663 37889999999998865 356888999999
Q ss_pred HHHHHHHhCCCCC--CCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC
Q 048746 383 TELQAKIFEPTPE--GARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG 460 (755)
Q Consensus 383 ~~~r~~i~~~f~~--g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g 460 (755)
++.|..--..|.+ +..+|+||||+.++|+|+. |+-||-+.+.| |+ | -.+.+++..+..|-+|||||.|
T Consensus 393 PeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~K---ys---g---~e~~~it~sqikQIAGRAGRf~ 462 (700)
T KOG0953|consen 393 PETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIK---YS---G---RETEDITVSQIKQIAGRAGRFG 462 (700)
T ss_pred CchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeeccc---CC---c---ccceeccHHHHHHHhhcccccc
Confidence 9988776666654 8899999999999999998 88888666633 33 2 2234899999999999999998
Q ss_pred ----CCEEEEeccCc
Q 048746 461 ----PGKCFRLYTLH 471 (755)
Q Consensus 461 ----~G~~~~l~~~~ 471 (755)
.|.+-+|+.++
T Consensus 463 s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 463 SKYPQGEVTTLHSED 477 (700)
T ss_pred cCCcCceEEEeeHhh
Confidence 38888888753
No 117
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.71 E-value=1.7e-17 Score=145.81 Aligned_cols=91 Identities=48% Similarity=0.728 Sum_probs=67.4
Q ss_pred HHHHHHHHccCccCCCCCCHHHHHhhcCCCChhhHHHHHhcccccchHHHHhhhcccccccccccCCcchHHHHH--HHH
Q 048746 521 KALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASDKDKCSDEIITIAAMLSVGNSIFYRPKDKQVHAD--NAR 598 (755)
Q Consensus 521 ~a~~~L~~~g~l~~~~~lT~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~~~f~~~~~~~~~~~--~~~ 598 (755)
+|++.|+.+||||++|+||++|+.|++||++|++||||+.|..++|++++++|||+||+ +++|..|.+++...+ ..+
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~-~~~f~~~~~~~~~~~~~~~~ 79 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSV-RSPFINPDDKEENAEQDNAK 79 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTS-S--B---CCGHHHHHH--HH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcC-CCcccCccHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999 789998765433322 344
Q ss_pred hcc---------cCCCCCcHHHHH
Q 048746 599 MNF---------HLGNVGDHIALL 613 (755)
Q Consensus 599 ~~f---------~~~~~~D~~~~l 613 (755)
++| .+. .|||+|+|
T Consensus 80 ~~~~~~~~~~~~~~~-~sDhltlL 102 (102)
T PF04408_consen 80 KKFRIKQARKKFSDD-ESDHLTLL 102 (102)
T ss_dssp HTT----------BT-TBHHHHHH
T ss_pred HHhhhhhcccccCCC-CCCHHhcC
Confidence 444 444 59999986
No 118
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.69 E-value=1.6e-15 Score=171.85 Aligned_cols=271 Identities=20% Similarity=0.201 Sum_probs=180.1
Q ss_pred CChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccc---cEE
Q 048746 131 PIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLG---HEV 207 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g---~~v 207 (755)
++|..|.-...-+..|+..-++||||.||||+...+.+-.. .++.++++++||+.|+.|+++++.+ ++...| ..+
T Consensus 82 ~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a-~kgkr~yii~PT~~Lv~Q~~~kl~~-~~e~~~~~~~~~ 159 (1187)
T COG1110 82 RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA-KKGKRVYIIVPTTTLVRQVYERLKK-FAEDAGSLDVLV 159 (1187)
T ss_pred CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH-hcCCeEEEEecCHHHHHHHHHHHHH-HHhhcCCcceee
Confidence 44999999999999999999999999999976554433221 2356899999999999999999988 433333 222
Q ss_pred eeeeecc---------ccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeeccc---ccCCccchHHHHH---------
Q 048746 208 GYSIRFE---------DCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAH---ERTLSTDILFGLL--------- 266 (755)
Q Consensus 208 g~~~~~~---------~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaH---er~~~~d~~~~~l--------- 266 (755)
+|+.... ...+++.+|+|+|.+.|...+..-.. -++++|++|.+| ..+-+.|-++.++
T Consensus 160 ~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~ 238 (1187)
T COG1110 160 VYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIES 238 (1187)
T ss_pred eeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHH
Confidence 2333221 12345789999999999876643222 378999999999 1112222111111
Q ss_pred -------H-HH---------------------HhcCCCcEEEEeccCCCH-----HHHHhhhCCCCEEEecCccccceEE
Q 048746 267 -------K-DL---------------------IKFRSDLKLLISSATLDA-----EKFSDYFGSAPIFKIPGRRYPVEIH 312 (755)
Q Consensus 267 -------~-~~---------------------~~~~~~~~~il~SAT~~~-----~~l~~~~~~~~~~~~~~~~~~v~~~ 312 (755)
+ .+ .+..+.-.+|++|||..+ ..|.+.++-.+--...+ ..++.-.
T Consensus 239 a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~~~~-LRNIvD~ 317 (1187)
T COG1110 239 AYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGSGGEG-LRNIVDI 317 (1187)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCccchh-hhheeee
Confidence 0 00 011244689999999933 35666665322111111 1223333
Q ss_pred EecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCC---HHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHH
Q 048746 313 YTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTG---QEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKI 389 (755)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~---~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i 389 (755)
|... +... .+..+.... +...|||++. ++.++++++.|+..+ +.+..+|+. ..+.
T Consensus 318 y~~~---~~~e----~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~G---------i~a~~~~a~-----~~~~ 375 (1187)
T COG1110 318 YVES---ESLE----KVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSHG---------INAELIHAE-----KEEA 375 (1187)
T ss_pred eccC---ccHH----HHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhcC---------ceEEEeecc-----chhh
Confidence 3333 2223 222322222 4467999999 899999999999854 788888884 3678
Q ss_pred hCCCCCCCcEEEEeC----CcccccCcCCC-eeEEEeCCCccc
Q 048746 390 FEPTPEGARKVVLAT----NIAETSLTIDG-IKYVIDPGFSKV 427 (755)
Q Consensus 390 ~~~f~~g~~~vlvaT----~i~~~Gidip~-v~~VId~g~~k~ 427 (755)
++.|..|+.+|||.. +++-||||+|. ++|+|-+|..|.
T Consensus 376 le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~ 418 (1187)
T COG1110 376 LEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKF 418 (1187)
T ss_pred hhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCce
Confidence 899999999999875 68999999997 899999998543
No 119
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.67 E-value=3.1e-18 Score=189.50 Aligned_cols=507 Identities=11% Similarity=-0.112 Sum_probs=357.0
Q ss_pred HhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCC----CccccCccHHHHHHHHHHHHHHHhCC
Q 048746 126 ERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQ----GKVGCTQPRRVAAMSVAARVSQEMGV 201 (755)
Q Consensus 126 ~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~----~~ilv~~P~r~la~q~a~~~~~~~~~ 201 (755)
.+.-.|.+.+-+.+++++..+.+.++.+.||||||++.|+.+++...... +.++..+|+++.|...+.+..-+.++
T Consensus 401 etgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctv 480 (1282)
T KOG0921|consen 401 ETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTV 480 (1282)
T ss_pred cccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeecc
Confidence 35668899999999999999999999999999999999999988644332 47899999999999988887776777
Q ss_pred ccccEEeeeeecccc-CCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEE
Q 048746 202 KLGHEVGYSIRFEDC-TSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLI 280 (755)
Q Consensus 202 ~~g~~vg~~~~~~~~-~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il 280 (755)
.++...++..++... ......+..+|.+.++..+..+ +......+.||.|++++++|++..++..+ .++.+
T Consensus 481 gvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~~~~ 552 (1282)
T KOG0921|consen 481 GVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI------PDVTV 552 (1282)
T ss_pred chhhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc------cceee
Confidence 777777777766543 2234556688888888777544 55677889999999999999998877654 45699
Q ss_pred eccCCCHHHHHhhhCCCCEEEecCccccceEEE------------------------e------------cCCccchHHH
Q 048746 281 SSATLDAEKFSDYFGSAPIFKIPGRRYPVEIHY------------------------T------------KAPEADYIDA 324 (755)
Q Consensus 281 ~SAT~~~~~l~~~~~~~~~~~~~~~~~~v~~~~------------------------~------------~~~~~~~~~~ 324 (755)
+++|+++..|-.++-.++...++++.++++.++ . ........++
T Consensus 553 ~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Ea 632 (1282)
T KOG0921|consen 553 HGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEA 632 (1282)
T ss_pred ccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHH
Confidence 999999998888877777777777655443221 0 0112333333
Q ss_pred HHHHHH------HHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCc
Q 048746 325 AIVTVL------QIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGAR 398 (755)
Q Consensus 325 ~~~~~~------~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~ 398 (755)
.+..+. .+..-.+++..|+|++++.-.......+...- -++. ....+...|......+.+.+.+....+.+
T Consensus 633 l~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~-ilp~--Hsq~~~~eqrkvf~~~p~gv~kii~stni 709 (1282)
T KOG0921|consen 633 LLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYE-ILPL--HSQLTSQEQRKVFEPVPEGVTKIILSTNI 709 (1282)
T ss_pred HHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcc-cccc--hhhcccHhhhhccCcccccccccccccce
Confidence 332221 12233467889999999988887777766531 1111 12456778999999999999999999999
Q ss_pred EEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCccccccCC
Q 048746 399 KVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYHKDMD 478 (755)
Q Consensus 399 ~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~~~l~ 478 (755)
.+...|...++.+.+.++.+|++++-.+.+.+-+...++...+.+.+...-.||.|||+|...+.||.++..+.+ ..|.
T Consensus 710 aetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t-~em~ 788 (1282)
T KOG0921|consen 710 AETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGT-AEMF 788 (1282)
T ss_pred eeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCc-Hhhh
Confidence 999999999999999999999999999999888888888888889999999999999999999999999999888 5788
Q ss_pred CCCccchhccCchHHHHHHHHcCCCCCCcC--CCCCCCcHHHHHHHHHHHHHccCccCCC--CCCHHHHHhhcCCCChhh
Q 048746 479 DNTVPEIQRTNLANVVLILKSLGIDDLVNF--DFIDPPPEEALLKALELLFALSALNKLG--ELTKVGRRMAEFPLDPML 554 (755)
Q Consensus 479 ~~~~pei~r~~l~~~~L~l~~~~~~~~~~~--~~~~~p~~~~i~~a~~~L~~~g~l~~~~--~lT~lG~~~~~~pl~p~~ 554 (755)
.+..+|+.++.+...++.++.+-...+..+ +.+.+|+..... ...|...+-+...| .+|++++.....|+.|..
T Consensus 789 r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~--m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~ 866 (1282)
T KOG0921|consen 789 RTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLRE--MGALDANDELTPLGRMLARLPIEPRIGKMMILGT 866 (1282)
T ss_pred cCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHH--hhhhhccCcccchhhhhhhccCcccccceeeech
Confidence 899999998877666655554433334444 344555554444 44444444444444 489999999999999999
Q ss_pred HHHHHhcccccchHHHHhhhcccccccccccCCcchHHHHHHHHhcccCCCCCcHHHH---HHHH-HHHHHccCCchhhh
Q 048746 555 SKMIVASDKDKCSDEIITIAAMLSVGNSIFYRPKDKQVHADNARMNFHLGNVGDHIAL---LRVY-NSWRECNYSTQWCY 630 (755)
Q Consensus 555 ~~~l~~~~~~~c~~~~~~i~a~ls~~~~~f~~~~~~~~~~~~~~~~f~~~~~~D~~~~---l~~~-~~~~~~~~~~~~c~ 630 (755)
+++...++.+-..+-...+++.- .....|...... ...+..+|+..-.+||.+. -.++ .+--+..+-..+|.
T Consensus 867 ~~g~~~~m~~~as~~s~~~~~~~-~~~~~~rl~g~q---~~~~g~kfsdhva~~~v~q~~r~~~q~ga~~e~efc~r~~l 942 (1282)
T KOG0921|consen 867 ALGAGSVMCDVASAMSFPTPFVP-REKHHSRLSGTQ---RKFAGNKFSDHVAIVSVIQGYREAVQMGAAAEREFCERYSL 942 (1282)
T ss_pred hhccchhhhhhhccccccccccc-ccccccccccch---hhccccccccchhhhhhhhhhHHHhhhhhhhhhhHhHhhhh
Confidence 99988776655444444444432 222333322111 1223444544333444321 1111 00111122224566
Q ss_pred hhhcchHHHHHHHHHHHHHH
Q 048746 631 ENYIQVRSMKRARDIRDQLE 650 (755)
Q Consensus 631 ~~~l~~~~l~~~~~ir~qL~ 650 (755)
.+-+...++..-+++..||+
T Consensus 943 ~~~~~~~t~~a~~ql~d~L~ 962 (1282)
T KOG0921|consen 943 SNPVLKMTDGARRQLIDVLR 962 (1282)
T ss_pred cchhhhhhhhhHHHHHHHHH
Confidence 67777667666667777765
No 120
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.67 E-value=3e-15 Score=177.54 Aligned_cols=311 Identities=17% Similarity=0.154 Sum_probs=191.0
Q ss_pred CChHHHHHHHHHHH----cCCeEEEEccCCCchhccHHHHHHHh--cccCCCccccCccHHHHHHHHHHHHHHHhCC-cc
Q 048746 131 PIYPYRDELLQAVN----EYQVLVIVGETGSGKTTQIPQYLHEA--GYTKQGKVGCTQPRRVAAMSVAARVSQEMGV-KL 203 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~----~~~~vii~apTGsGKT~~ip~~l~~~--~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~-~~ 203 (755)
.+.+||.+.+..+. .+...|+.-+.|.|||.++..++... .....+.+||++|.- +..+..+.+.+.... .+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~S-lL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKS-TLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChH-HHHHHHHHHHHHCCCCce
Confidence 47899999998753 56788999999999996554443321 112235789999974 456777777664421 11
Q ss_pred ccEEeeeee-----ccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEE
Q 048746 204 GHEVGYSIR-----FEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKL 278 (755)
Q Consensus 204 g~~vg~~~~-----~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~ 278 (755)
....|.... .........+|+++|.+++.+....- .-.++++||||||| +.-+...... +.+.... ....
T Consensus 248 ~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L-~k~~W~~VIvDEAH-rIKN~~Skls--kalr~L~-a~~R 322 (1033)
T PLN03142 248 VKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTAL-KRFSWRYIIIDEAH-RIKNENSLLS--KTMRLFS-TNYR 322 (1033)
T ss_pred EEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHh-ccCCCCEEEEcCcc-ccCCHHHHHH--HHHHHhh-cCcE
Confidence 112221100 00112245789999999987653211 12357899999999 5544433221 2222222 3345
Q ss_pred EEeccCC---CHHH------------------HHhhhCCCC-----------------EEE--ec---Cccccc-eE--E
Q 048746 279 LISSATL---DAEK------------------FSDYFGSAP-----------------IFK--IP---GRRYPV-EI--H 312 (755)
Q Consensus 279 il~SAT~---~~~~------------------l~~~~~~~~-----------------~~~--~~---~~~~~v-~~--~ 312 (755)
+++|+|+ +... |..||.... ++. .. ....|. .. .
T Consensus 323 LLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv 402 (1033)
T PLN03142 323 LLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETIL 402 (1033)
T ss_pred EEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEE
Confidence 8899998 2222 222222110 000 00 000111 11 1
Q ss_pred EecCCcc--c-h---H-------------HHHH--------------------------------------HHHHHHH--
Q 048746 313 YTKAPEA--D-Y---I-------------DAAI--------------------------------------VTVLQIH-- 333 (755)
Q Consensus 313 ~~~~~~~--~-~---~-------------~~~~--------------------------------------~~~~~~~-- 333 (755)
+...... . | + ...+ ..+..+.
T Consensus 403 ~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~ 482 (1033)
T PLN03142 403 KVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPK 482 (1033)
T ss_pred eeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHH
Confidence 1110000 0 0 0 0000 0000000
Q ss_pred hhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCC---CCcEEEEeCCccccc
Q 048746 334 VTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPE---GARKVVLATNIAETS 410 (755)
Q Consensus 334 ~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~---g~~~vlvaT~i~~~G 410 (755)
....+.++|||+........+.+.|... ++.++.+||+++..+|..+++.|.. +..-+|++|.+++.|
T Consensus 483 Lk~~g~KVLIFSQft~~LdiLed~L~~~---------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlG 553 (1033)
T PLN03142 483 LKERDSRVLIFSQMTRLLDILEDYLMYR---------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLG 553 (1033)
T ss_pred HHhcCCeEEeehhHHHHHHHHHHHHHHc---------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccC
Confidence 1123569999999888888888877653 3678889999999999999999964 234678999999999
Q ss_pred CcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC---CEEEEeccCcccc
Q 048746 411 LTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP---GKCFRLYTLHNYH 474 (755)
Q Consensus 411 idip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~---G~~~~l~~~~~~~ 474 (755)
||+...++||.|+. |.++....|++||+-|.|. =.+|+|+++...+
T Consensus 554 INLt~Ad~VIiyD~------------------dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 554 INLATADIVILYDS------------------DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred CchhhCCEEEEeCC------------------CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 99999999999999 9999999999999999994 4688999987653
No 121
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.66 E-value=6.4e-16 Score=178.00 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=100.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCe
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGI 416 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v 416 (755)
.+.++||||++++.++.+++.|.+.+ +.+..+||++++.+|.++++.|+.|...|+|||+++++|+|+|++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~g---------i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v 511 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELG---------IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEV 511 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhc---------cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCC
Confidence 46789999999999999999998853 778889999999999999999999999999999999999999999
Q ss_pred eEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCcc
Q 048746 417 KYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHN 472 (755)
Q Consensus 417 ~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~ 472 (755)
++||+++.... ..|.+..+|+||+|||||..+|+++.+++..+
T Consensus 512 ~lVvi~Dadif-------------G~p~~~~~~iqriGRagR~~~G~vi~~~~~~~ 554 (655)
T TIGR00631 512 SLVAILDADKE-------------GFLRSERSLIQTIGRAARNVNGKVIMYADKIT 554 (655)
T ss_pred cEEEEeCcccc-------------cCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCC
Confidence 99998772110 01889999999999999999999998888543
No 122
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.66 E-value=2.2e-14 Score=152.45 Aligned_cols=168 Identities=17% Similarity=0.139 Sum_probs=123.8
Q ss_pred cEEEEeccCCCHHHHHhhhCCCCEEE-ecCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHH
Q 048746 276 LKLLISSATLDAEKFSDYFGSAPIFK-IPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETA 354 (755)
Q Consensus 276 ~~~il~SAT~~~~~l~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l 354 (755)
.|+|.+|||+..-.+..--+ .++. +...+.-++-.....|....++..+..+.... ..+.++||-+-|++.++.+
T Consensus 387 ~q~i~VSATPg~~E~e~s~~--~vveQiIRPTGLlDP~ievRp~~~QvdDL~~EI~~r~--~~~eRvLVTtLTKkmAEdL 462 (663)
T COG0556 387 PQTIYVSATPGDYELEQSGG--NVVEQIIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRV--AKNERVLVTTLTKKMAEDL 462 (663)
T ss_pred CCEEEEECCCChHHHHhccC--ceeEEeecCCCCCCCceeeecCCCcHHHHHHHHHHHH--hcCCeEEEEeehHHHHHHH
Confidence 68999999995443433211 1211 11111112222222344455565555554432 2358999999999999999
Q ss_pred HHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCC
Q 048746 355 DEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRT 434 (755)
Q Consensus 355 ~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~ 434 (755)
.+.|.+.+ +.+..+||++..-+|.++++..+.|...|||.-|.+-.|+|+|.|..|.-.|.-|.-+
T Consensus 463 T~Yl~e~g---------ikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGF----- 528 (663)
T COG0556 463 TEYLKELG---------IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGF----- 528 (663)
T ss_pred HHHHHhcC---------ceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCcccc-----
Confidence 99999964 8999999999999999999999999999999999999999999999987665533322
Q ss_pred CcccccccccCHHhHHhhhcccCCCCCCEEEEecc
Q 048746 435 GMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYT 469 (755)
Q Consensus 435 ~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~ 469 (755)
..|-.+.+|-+|||+|.-.|+++..-.
T Consensus 529 --------LRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 529 --------LRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred --------ccccchHHHHHHHHhhccCCeEEEEch
Confidence 578889999999999999999875443
No 123
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.64 E-value=1.4e-15 Score=161.07 Aligned_cols=312 Identities=14% Similarity=0.049 Sum_probs=199.9
Q ss_pred cCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHh--cccCCCccccCccHHHHHHHHHHHHHHHhCCcccc
Q 048746 128 KTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEA--GYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGH 205 (755)
Q Consensus 128 ~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~--~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~ 205 (755)
..-..+.+|.+++..+.+|+++++.-.|.|||++. |+..... ...+....+++.|+.+++....+-+.-.+..-...
T Consensus 283 ~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~-~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~ 361 (1034)
T KOG4150|consen 283 TGESGIAISLELLKFASEGRADGGNEARQAGKGTC-PTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKAR 361 (1034)
T ss_pred cccchhhhhHHHHhhhhhcccccccchhhcCCccC-cccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhh
Confidence 33445899999999999999999999999999932 2211110 11223467888999998876542110000000000
Q ss_pred EEeeeeecccc--------CCCCceEEEeCcHHHHHHHhCCC-----CCCCCCceEeecccccCCccc-hHHHHHHHHHh
Q 048746 206 EVGYSIRFEDC--------TSEKTILKYMTDGMLLREILSEP-----NLESYSVLMVDEAHERTLSTD-ILFGLLKDLIK 271 (755)
Q Consensus 206 ~vg~~~~~~~~--------~~~~~~I~v~T~g~Ll~~l~~~~-----~l~~~~~vIiDEaHer~~~~d-~~~~~l~~~~~ 271 (755)
...|.-..+.. ...+.+++|..|.+.....+.+. .+-...++++||+|-...-+. .....++.+..
T Consensus 362 K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~ 441 (1034)
T KOG4150|consen 362 KSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSD 441 (1034)
T ss_pred hcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHH
Confidence 00011111111 11356788999988776554332 233456889999993222222 22223333333
Q ss_pred ------cCCCcEEEEeccCC-C-HHHHHhhhCCC--CEEEecCccccceEEEecCCc---------cchHHHHHHHHHHH
Q 048746 272 ------FRSDLKLLISSATL-D-AEKFSDYFGSA--PIFKIPGRRYPVEIHYTKAPE---------ADYIDAAIVTVLQI 332 (755)
Q Consensus 272 ------~~~~~~~il~SAT~-~-~~~l~~~~~~~--~~~~~~~~~~~v~~~~~~~~~---------~~~~~~~~~~~~~~ 332 (755)
...+++++-.|||+ + .....+.++-. ..+++.|.+..-+....-.|. .+++......+.++
T Consensus 442 L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~ 521 (1034)
T KOG4150|consen 442 LIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEM 521 (1034)
T ss_pred HHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHH
Confidence 23579999999999 4 44555565533 346666765544444332221 12222222222332
Q ss_pred HhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCc
Q 048746 333 HVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLT 412 (755)
Q Consensus 333 ~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gid 412 (755)
.. .+-++|.||++++-|+.+....++.+...+.++- -.+..+.||...++|++|....-.|+..-|+|||++|-|||
T Consensus 522 i~--~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV-~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGID 598 (1034)
T KOG4150|consen 522 VQ--HGLRCIAFCPSRKLCELVLCLTREILAETAPHLV-EAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGID 598 (1034)
T ss_pred HH--cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHH-HHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccc
Confidence 22 3568999999999999888777665533333211 23567899999999999999888999999999999999999
Q ss_pred CCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC
Q 048746 413 IDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP 461 (755)
Q Consensus 413 ip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~ 461 (755)
|.+.+.|+..|| |.|.+++.|..|||||...
T Consensus 599 IG~LDAVl~~GF------------------P~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 599 IGHLDAVLHLGF------------------PGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred cccceeEEEccC------------------chhHHHHHHHhccccccCC
Confidence 999999999999 9999999999999999883
No 124
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.62 E-value=5.6e-14 Score=168.97 Aligned_cols=180 Identities=21% Similarity=0.258 Sum_probs=109.7
Q ss_pred cEEEEeccCCC----HHHHHhhhCCCCE--EEecCccccc---eEEEec--C------CccchHHHHHHHHHHHHhhCCC
Q 048746 276 LKLLISSATLD----AEKFSDYFGSAPI--FKIPGRRYPV---EIHYTK--A------PEADYIDAAIVTVLQIHVTQSP 338 (755)
Q Consensus 276 ~~~il~SAT~~----~~~l~~~~~~~~~--~~~~~~~~~v---~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~ 338 (755)
..+|++|||+. .+.+.+.+|-... ..+...+++. ...|.+ . ....+.+.....+..+.... +
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~-~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAIT-S 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhc-C
Confidence 46899999994 3455566653221 1221222321 111221 1 12345555555666654443 6
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCee-
Q 048746 339 GDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIK- 417 (755)
Q Consensus 339 ~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~- 417 (755)
|++|||++|.+..+.++..|...... .++.+.. .+.. ..|.++++.|++|...||+||+.+.+|||+|+..
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~~-----~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l 746 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPEF-----EGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGL 746 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhccc-----cCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCce
Confidence 89999999999999999999763211 1122222 2222 4678899999999999999999999999999865
Q ss_pred -EEEeCCCcccccccCC-------------CCcccc--cccccCHHhHHhhhcccCCCCC--CEEEEe
Q 048746 418 -YVIDPGFSKVKSYNPR-------------TGMESL--LVHPISKASAMQRAGRSGRTGP--GKCFRL 467 (755)
Q Consensus 418 -~VId~g~~k~~~~~~~-------------~~~~~l--~~~p~s~~~~~QR~GRaGR~g~--G~~~~l 467 (755)
.||-.++ +.-.|. .|...+ ..-|.....+.|-+||.=|... |..+.+
T Consensus 747 ~~viI~~L---Pf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 747 VCLVIPRL---PFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred EEEEEeCC---CCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 4554443 332222 111111 1125566778999999999884 655544
No 125
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.61 E-value=1.2e-15 Score=131.92 Aligned_cols=91 Identities=56% Similarity=0.858 Sum_probs=79.1
Q ss_pred HHHHHHHHccCccCCCCCCHHHHHhhcCCCChhhHHHHHhcccc-cchHHHHhhhcccccccccccCCcchHHHHHHHHh
Q 048746 521 KALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASDKD-KCSDEIITIAAMLSVGNSIFYRPKDKQVHADNARM 599 (755)
Q Consensus 521 ~a~~~L~~~g~l~~~~~lT~lG~~~~~~pl~p~~~~~l~~~~~~-~c~~~~~~i~a~ls~~~~~f~~~~~~~~~~~~~~~ 599 (755)
+|++.|+.+||||.+|+||++|+.|++||++|++||||+.|..+ +|.+++++|+|+++.. ++|..+ .........++
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~-~~~~~~-~~~~~~~~~~~ 78 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVG-DPFPRP-EKRAEADAARR 78 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCC-CCcCCc-hHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999 8999999999999984 467766 45556667788
Q ss_pred cccCCCCCcHHHHH
Q 048746 600 NFHLGNVGDHIALL 613 (755)
Q Consensus 600 ~f~~~~~~D~~~~l 613 (755)
.|..+..|||++++
T Consensus 79 ~~~~~~~~D~~~~l 92 (92)
T smart00847 79 RFASGRESDHLTLL 92 (92)
T ss_pred HccCCCCCChhhhC
Confidence 88765249999864
No 126
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=1.4e-13 Score=154.54 Aligned_cols=122 Identities=25% Similarity=0.237 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEE
Q 048746 321 YIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKV 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~v 400 (755)
+..+.+..+...|. .+.||||.+.+.+..+.++..|.+.+ +....+++.-...+-.-|-+.-+. -.|
T Consensus 412 k~~Aii~ei~~~~~--~GrPVLVgt~sI~~SE~ls~~L~~~g---------I~h~vLNAk~~~~EA~IIa~AG~~--gaV 478 (764)
T PRK12326 412 KNDAIVEHIAEVHE--TGQPVLVGTHDVAESEELAERLRAAG---------VPAVVLNAKNDAEEARIIAEAGKY--GAV 478 (764)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHHhCC---------CcceeeccCchHhHHHHHHhcCCC--CcE
Confidence 44555566666554 46899999999999999999999854 444456665333332223333232 469
Q ss_pred EEeCCcccccCcCC---------------CeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEE
Q 048746 401 VLATNIAETSLTID---------------GIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKC 464 (755)
Q Consensus 401 lvaT~i~~~Gidip---------------~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~ 464 (755)
.||||+|+||-||. +=-|||-+.. +.|..-=.|-.|||||.| ||.+
T Consensus 479 TIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTer------------------heSrRID~QLrGRaGRQGDpGss 540 (764)
T PRK12326 479 TVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGR------------------HRSERLDNQLRGRAGRQGDPGSS 540 (764)
T ss_pred EEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccC------------------CchHHHHHHHhcccccCCCCCce
Confidence 99999999999996 1236665555 888888899999999999 6988
Q ss_pred EEeccCccc
Q 048746 465 FRLYTLHNY 473 (755)
Q Consensus 465 ~~l~~~~~~ 473 (755)
-.+.+-++.
T Consensus 541 ~f~lSleDd 549 (764)
T PRK12326 541 VFFVSLEDD 549 (764)
T ss_pred eEEEEcchh
Confidence 777775543
No 127
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=1.2e-14 Score=167.43 Aligned_cols=195 Identities=22% Similarity=0.291 Sum_probs=139.0
Q ss_pred CceEeecccccCCccchHHHHHHHHHhcC----------------------CCcEEEEeccCC--CHHHHHhhhCCCCEE
Q 048746 245 SVLMVDEAHERTLSTDILFGLLKDLIKFR----------------------SDLKLLISSATL--DAEKFSDYFGSAPIF 300 (755)
Q Consensus 245 ~~vIiDEaHer~~~~d~~~~~l~~~~~~~----------------------~~~~~il~SAT~--~~~~l~~~~~~~~~~ 300 (755)
.++||||.-.|.....-+..=+...+... --.++-+||.|. ....|.+.++ -+++
T Consensus 481 kV~IVDe~TGRim~gRr~sdGLHQaIEaKE~v~i~~e~~t~AtIT~QnfFr~Y~kLaGMTGTA~te~~Ef~~iY~-L~Vv 559 (1025)
T PRK12900 481 QVMIVDEFTGRILPGRRYSDGLHQAIEAKENVKIEGETQTMATITIQNFFRLYKKLAGMTGTAETEASEFFEIYK-LDVV 559 (1025)
T ss_pred EEEEEECCCCccCCCCCcchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHHhchhhcccCCCChhHHHHHHHHhC-CcEE
Confidence 56789997766655443333233322211 114688899998 4456666664 5566
Q ss_pred EecCccccc-----eEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEE
Q 048746 301 KIPGRRYPV-----EIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIIC 375 (755)
Q Consensus 301 ~~~~~~~~v-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~ 375 (755)
.+|....-+ +..|. ....+..+.+..+...+ ..+.++||||+|++.++.++..|...+ +...
T Consensus 560 ~IPTnrP~~R~D~~d~vy~--t~~eK~~Ali~~I~~~~--~~grpVLIft~Sve~sE~Ls~~L~~~g---------I~h~ 626 (1025)
T PRK12900 560 VIPTNKPIVRKDMDDLVYK--TRREKYNAIVLKVEELQ--KKGQPVLVGTASVEVSETLSRMLRAKR---------IAHN 626 (1025)
T ss_pred ECCCCCCcceecCCCeEec--CHHHHHHHHHHHHHHHh--hCCCCEEEEeCcHHHHHHHHHHHHHcC---------CCce
Confidence 676542111 12221 22334444444444433 246899999999999999999998854 6667
Q ss_pred eccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCC---Cee-----EEEeCCCcccccccCCCCcccccccccCHH
Q 048746 376 PIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTID---GIK-----YVIDPGFSKVKSYNPRTGMESLLVHPISKA 447 (755)
Q Consensus 376 ~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip---~v~-----~VId~g~~k~~~~~~~~~~~~l~~~p~s~~ 447 (755)
.+|+ .+.+|+..+..|+.+...|+||||+|+||+||+ +|. +||++.. |.|..
T Consensus 627 vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgter------------------hes~R 686 (1025)
T PRK12900 627 VLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSER------------------HESRR 686 (1025)
T ss_pred eecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCC------------------CchHH
Confidence 7887 588999999999999999999999999999999 554 4487777 99999
Q ss_pred hHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 448 SAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 448 ~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
.|.||+|||||.| ||.+..+++.++.
T Consensus 687 id~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 687 IDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred HHHHHhhhhhcCCCCcceEEEechhHH
Confidence 9999999999999 6999999998765
No 128
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.58 E-value=1.4e-14 Score=168.21 Aligned_cols=112 Identities=21% Similarity=0.194 Sum_probs=99.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCe
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGI 416 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v 416 (755)
.+.++||||++++.++.+++.|.+. ++.+..+||++++.+|..+++.|+.|...|+|||+++++|+|+|++
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~---------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v 515 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEV 515 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc---------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCC
Confidence 4678999999999999999999874 3788999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccC
Q 048746 417 KYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTL 470 (755)
Q Consensus 417 ~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~ 470 (755)
++||+++.... | -|.+..+|+||+|||||...|.|+.+++.
T Consensus 516 ~lVii~d~eif-------G------~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 516 SLVAILDADKE-------G------FLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred cEEEEeCCccc-------c------cCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 99998775111 0 17899999999999999888999999884
No 129
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.58 E-value=1.2e-14 Score=134.29 Aligned_cols=104 Identities=24% Similarity=0.466 Sum_probs=96.0
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCe
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGI 416 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v 416 (755)
.++++||||++...++.+++.|.+. ...+..+||+++..+|..+++.|.+|..+||++|+++++|+|+|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~ 97 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP---------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNV 97 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhC
Confidence 4789999999999999999999872 3678899999999999999999999999999999999999999999
Q ss_pred eEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEe
Q 048746 417 KYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRL 467 (755)
Q Consensus 417 ~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l 467 (755)
++||.++. |.+..++.|++||+||.| .|.|+.+
T Consensus 98 ~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 98 SVVINYDL------------------PWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CEEEEeCC------------------CCCHHHheecccccccCCCCceEEeC
Confidence 99998888 999999999999999999 5877653
No 130
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.55 E-value=4.3e-13 Score=155.46 Aligned_cols=309 Identities=18% Similarity=0.183 Sum_probs=177.6
Q ss_pred HhcCCCChHHHHHHHHHHHc--------CCeEEEEccCCCchhccHHHHHHHhcc-cCCCccccCccHHHHHHHHHHHHH
Q 048746 126 ERKTLPIYPYRDELLQAVNE--------YQVLVIVGETGSGKTTQIPQYLHEAGY-TKQGKVGCTQPRRVAAMSVAARVS 196 (755)
Q Consensus 126 ~~~~lPl~~~Q~~~l~~i~~--------~~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~ilv~~P~r~la~q~a~~~~ 196 (755)
.+..-|-+.+|..+.+.+.. |-.+|-.|.||||||+.=..+++...- ..+.+..+..-.|.|..|+-..+.
T Consensus 403 ~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r 482 (1110)
T TIGR02562 403 QRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALK 482 (1110)
T ss_pred cCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHH
Confidence 35666789999999998643 446788899999999655444433222 223355555555666655555444
Q ss_pred HHhCCc---cccEEee------------------------------------eeeccccC-----------C------CC
Q 048746 197 QEMGVK---LGHEVGY------------------------------------SIRFEDCT-----------S------EK 220 (755)
Q Consensus 197 ~~~~~~---~g~~vg~------------------------------------~~~~~~~~-----------~------~~ 220 (755)
+.+|.. +...||. .+.++... + -.
T Consensus 483 ~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ 562 (1110)
T TIGR02562 483 TRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLA 562 (1110)
T ss_pred HhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhc
Confidence 443321 1111110 01111110 0 13
Q ss_pred ceEEEeCcHHHHHHHhCCC----CCC----CCCceEeecccccCCccchHHHHHHHHHh--cCCCcEEEEeccCCCHHHH
Q 048746 221 TILKYMTDGMLLREILSEP----NLE----SYSVLMVDEAHERTLSTDILFGLLKDLIK--FRSDLKLLISSATLDAEKF 290 (755)
Q Consensus 221 ~~I~v~T~g~Ll~~l~~~~----~l~----~~~~vIiDEaHer~~~~d~~~~~l~~~~~--~~~~~~~il~SAT~~~~~l 290 (755)
..+.|||+..++.....-. .+. .-+.|||||+| ..+... ..++..++. ..-..++++||||++....
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVH--aYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPD--DYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCc--cCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 5788999988887653211 111 13789999999 444332 233333333 3346789999999976532
Q ss_pred H----hhh----------CC--CCE--EEe--cC------------------------c-----cccce--EEEecCCcc
Q 048746 291 S----DYF----------GS--API--FKI--PG------------------------R-----RYPVE--IHYTKAPEA 319 (755)
Q Consensus 291 ~----~~~----------~~--~~~--~~~--~~------------------------~-----~~~v~--~~~~~~~~~ 319 (755)
. .|. +. .++ ... .. | .-|+. -...+.+..
T Consensus 640 ~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~ 719 (1110)
T TIGR02562 640 KTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSL 719 (1110)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCc
Confidence 2 232 11 111 100 00 0 00000 001111111
Q ss_pred ---------chHHHHHHHHHHHHhhC----C-CCC----EEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCC
Q 048746 320 ---------DYIDAAIVTVLQIHVTQ----S-PGD----ILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANL 381 (755)
Q Consensus 320 ---------~~~~~~~~~~~~~~~~~----~-~~~----iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l 381 (755)
.+.......++.+|... + .|+ .||=+++.+.+-.++..|.......+ ..+.++.|||..
T Consensus 720 ~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~---~~i~~~~yHSr~ 796 (1110)
T TIGR02562 720 PRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEK---YQIHLCCYHAQD 796 (1110)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccC---CceeEEEecccC
Confidence 12333344455555422 1 122 47778888888888888887653222 357789999999
Q ss_pred CHHHHHHHhCCC--------------------------CCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCC
Q 048746 382 PTELQAKIFEPT--------------------------PEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTG 435 (755)
Q Consensus 382 ~~~~r~~i~~~f--------------------------~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~ 435 (755)
+...|..+++.. ..+...|+|||.+.|.|+|++ .+++|
T Consensus 797 ~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~--------------- 860 (1110)
T TIGR02562 797 PLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAI--------------- 860 (1110)
T ss_pred hHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeee---------------
Confidence 877776654221 135678999999999999998 45554
Q ss_pred cccccccccCHHhHHhhhcccCCCCC
Q 048746 436 MESLLVHPISKASAMQRAGRSGRTGP 461 (755)
Q Consensus 436 ~~~l~~~p~s~~~~~QR~GRaGR~g~ 461 (755)
+.|.+..+.+||+||+.|.+.
T Consensus 861 -----~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 861 -----ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred -----eccCcHHHHHHHhhccccccc
Confidence 348899999999999999984
No 131
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.54 E-value=5.6e-15 Score=123.53 Aligned_cols=73 Identities=25% Similarity=0.364 Sum_probs=70.3
Q ss_pred CceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhH
Q 048746 370 AELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASA 449 (755)
Q Consensus 370 ~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~ 449 (755)
.++.+..+||++++.+|..+++.|.+|...|||||+++++|||+|++++||.++. |.+..+|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~~~~~~~ 67 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDP------------------PWSPEEY 67 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSS------------------ESSHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccccccc------------------CCCHHHH
Confidence 3488999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HhhhcccCCCC
Q 048746 450 MQRAGRSGRTG 460 (755)
Q Consensus 450 ~QR~GRaGR~g 460 (755)
.|++||+||.|
T Consensus 68 ~Q~~GR~~R~g 78 (78)
T PF00271_consen 68 IQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSTTT
T ss_pred HHHhhcCCCCC
Confidence 99999999986
No 132
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.54 E-value=1.2e-13 Score=136.83 Aligned_cols=166 Identities=26% Similarity=0.192 Sum_probs=113.4
Q ss_pred CCChHHHHHHHHHHHcC-CeEEEEccCCCchhccHHHHHHHhccc-CCCccccCccHHHHHHHHHHHHHHHhCCccccEE
Q 048746 130 LPIYPYRDELLQAVNEY-QVLVIVGETGSGKTTQIPQYLHEAGYT-KQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEV 207 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~-~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~v 207 (755)
.+++++|.++++.+... +++++.+|||||||+.+..++...... ...++++++|++.++.|+..++...+........
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVV 86 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEE
Confidence 34599999999999888 999999999999997666666554332 2358999999999999999998886543221111
Q ss_pred eeeeecc------ccCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEE
Q 048746 208 GYSIRFE------DCTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLI 280 (755)
Q Consensus 208 g~~~~~~------~~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il 280 (755)
....... ........++++|++.+.+.+.... ...+++++||||+|.... ......+...+....+..++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~v~ 165 (201)
T smart00487 87 GLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLD-GGFGDQLEKLLKLLPKNVQLLL 165 (201)
T ss_pred EEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhc-CCcHHHHHHHHHhCCccceEEE
Confidence 1111111 0112233999999999999887654 677889999999993322 1333333333333456889999
Q ss_pred eccCC--CHHHHHhhhCC
Q 048746 281 SSATL--DAEKFSDYFGS 296 (755)
Q Consensus 281 ~SAT~--~~~~l~~~~~~ 296 (755)
+|||+ +.......+..
T Consensus 166 ~saT~~~~~~~~~~~~~~ 183 (201)
T smart00487 166 LSATPPEEIENLLELFLN 183 (201)
T ss_pred EecCCchhHHHHHHHhcC
Confidence 99999 44455444443
No 133
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.54 E-value=4.9e-14 Score=147.95 Aligned_cols=298 Identities=17% Similarity=0.170 Sum_probs=190.5
Q ss_pred CChHHHHHHHHHHHcC---CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEE
Q 048746 131 PIYPYRDELLQAVNEY---QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEV 207 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~~~---~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~v 207 (755)
-+.|+|+..+..+..| +.-||+-|.|+|||..-...+ ..-+++++|++..-+.+.|...++...........+
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa----~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~ 377 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA----CTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQIC 377 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee----eeecccEEEEecCccCHHHHHHHHHhhcccCccceE
Confidence 3689999999997654 567999999999993322111 112347888889999999999888776555444444
Q ss_pred eeeeeccccCCCCceEEEeCcHHHHHHHh---------CCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEE
Q 048746 208 GYSIRFEDCTSEKTILKYMTDGMLLREIL---------SEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKL 278 (755)
Q Consensus 208 g~~~~~~~~~~~~~~I~v~T~g~Ll~~l~---------~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~ 278 (755)
-+..........++.|+|.|..|+..--. .-..-..++++|+||+| .+....+..++.++.... -
T Consensus 378 rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVH--vvPA~MFRRVlsiv~aHc----K 451 (776)
T KOG1123|consen 378 RFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVH--VVPAKMFRRVLSIVQAHC----K 451 (776)
T ss_pred EeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhc--cchHHHHHHHHHHHHHHh----h
Confidence 44333333345677899999887743110 00123467999999999 555555555666655544 3
Q ss_pred EEeccCC--CHHHHHh--hhCCCCEEEec-------Cccccce-------------------------EEEecCCccchH
Q 048746 279 LISSATL--DAEKFSD--YFGSAPIFKIP-------GRRYPVE-------------------------IHYTKAPEADYI 322 (755)
Q Consensus 279 il~SAT~--~~~~l~~--~~~~~~~~~~~-------~~~~~v~-------------------------~~~~~~~~~~~~ 322 (755)
++++||+ ..+++.+ |+-++.++... |..-.|+ ..|.-.|. .
T Consensus 452 LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~---K 528 (776)
T KOG1123|consen 452 LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPN---K 528 (776)
T ss_pred ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcc---h
Confidence 8999999 3233322 12111111110 0000000 01111111 1
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCC-CcEEE
Q 048746 323 DAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEG-ARKVV 401 (755)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g-~~~vl 401 (755)
-.+..-+++.|.. .+.+||||..+.-...+.+-.|.+- .+||..++.+|.+|++.|+-+ .++-|
T Consensus 529 FraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~Kp--------------fIYG~Tsq~ERm~ILqnFq~n~~vNTI 593 (776)
T KOG1123|consen 529 FRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGKP--------------FIYGPTSQNERMKILQNFQTNPKVNTI 593 (776)
T ss_pred hHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCCc--------------eEECCCchhHHHHHHHhcccCCccceE
Confidence 1233455666665 4789999998877666666555442 379999999999999999765 47788
Q ss_pred EeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-------CCEEEEeccCccc
Q 048746 402 LATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-------PGKCFRLYTLHNY 473 (755)
Q Consensus 402 vaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-------~G~~~~l~~~~~~ 473 (755)
+-..++.+++|+|..++.|+..- .-.|..+=.||.||.-|.. +...|.|++++..
T Consensus 594 FlSKVgDtSiDLPEAnvLIQISS-----------------H~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 594 FLSKVGDTSIDLPEANVLIQISS-----------------HGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred EEeeccCccccCCcccEEEEEcc-----------------cccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 88999999999999999995322 2467778899999998876 2345666665543
No 134
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=3.9e-13 Score=154.66 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=76.8
Q ss_pred CCCChHHHHHHHHHHHcCCeEEEEccCCCchhcc--HHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccE
Q 048746 129 TLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQ--IPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHE 206 (755)
Q Consensus 129 ~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~--ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~ 206 (755)
.+-+.++-.+++-.+.=++--|....||+|||.. +|.++.-. .+..|.++.|+..||.+-++.+...+. .+|..
T Consensus 78 ~lGm~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al---~G~~VhvvT~ndyLA~RD~e~m~~l~~-~lGl~ 153 (913)
T PRK13103 78 VMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNAL---SGKGVHVVTVNDYLARRDANWMRPLYE-FLGLS 153 (913)
T ss_pred HhCCCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHHHhc-ccCCE
Confidence 3444445555566544445568899999999943 34443222 355788999999999999998887553 24445
Q ss_pred Eeeeeec----cccCCCCceEEEeCcHHH-HHHHhCCC-------CCCCCCceEeeccc
Q 048746 207 VGYSIRF----EDCTSEKTILKYMTDGML-LREILSEP-------NLESYSVLMVDEAH 253 (755)
Q Consensus 207 vg~~~~~----~~~~~~~~~I~v~T~g~L-l~~l~~~~-------~l~~~~~vIiDEaH 253 (755)
||..... +....-.++|+|+|..-+ .+.|+.+- ....+.++||||+|
T Consensus 154 v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvD 212 (913)
T PRK13103 154 VGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVD 212 (913)
T ss_pred EEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhh
Confidence 5532211 111123589999999775 23332222 34788999999999
No 135
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.50 E-value=1.6e-13 Score=127.80 Aligned_cols=136 Identities=35% Similarity=0.359 Sum_probs=95.2
Q ss_pred CeEEEEccCCCchhccHHHHHHHhccc-CCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccC------CC
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYT-KQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCT------SE 219 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~------~~ 219 (755)
+++++.+|||+|||+++..++...... ..++++|++|++.++.+....+...... +..+.+........ ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 468999999999997777766655332 4468999999999999999988886642 23333333332222 45
Q ss_pred CceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 220 KTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 220 ~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
...|+++|++.+.+.+.... ....+++|||||+| ......................+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h-~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAH-RLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHH-HHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 78999999999988775543 45678999999999 3333332222222334456678999999996
No 136
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.45 E-value=6.9e-13 Score=152.43 Aligned_cols=331 Identities=15% Similarity=0.165 Sum_probs=217.3
Q ss_pred hHHHHHHHHHH-HcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEee--
Q 048746 133 YPYRDELLQAV-NEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGY-- 209 (755)
Q Consensus 133 ~~~Q~~~l~~i-~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~-- 209 (755)
.++|.++++.+ ..++++++.+|+|||||..+-.+++. ....++++++.|.-+.+..+++.+.+.++.-.|..+.-
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ 1222 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLT 1222 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC--CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecC
Confidence 56788888774 56889999999999999887777765 33456999999999999988887777666555554431
Q ss_pred -eeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCcc----chHHHHHHHHHhcCCCcEEEEeccC
Q 048746 210 -SIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLST----DILFGLLKDLIKFRSDLKLLISSAT 284 (755)
Q Consensus 210 -~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~----d~~~~~l~~~~~~~~~~~~il~SAT 284 (755)
....+-+.-...+|+++||...-.. + ....+++.|.||.|.-+-.. .....+..+..+.-+++|++.+|..
T Consensus 1223 ge~s~~lkl~~~~~vii~tpe~~d~l-q---~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~ 1298 (1674)
T KOG0951|consen 1223 GETSLDLKLLQKGQVIISTPEQWDLL-Q---SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSS 1298 (1674)
T ss_pred CccccchHHhhhcceEEechhHHHHH-h---hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehh
Confidence 1111222335789999999876433 2 67788999999999333111 1122233333345568999999998
Q ss_pred C-CHHHHHhhhCCCCEEEec--CccccceEEEecCCccchHHHHH-------HHHHHHHhhCCCCCEEEEcCCHHHHHHH
Q 048746 285 L-DAEKFSDYFGSAPIFKIP--GRRYPVEIHYTKAPEADYIDAAI-------VTVLQIHVTQSPGDILVFLTGQEEIETA 354 (755)
Q Consensus 285 ~-~~~~l~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~iLVF~~~~~~~~~l 354 (755)
+ ++..+ -++....++... .|..|.+++........+....+ ..+.. +.. .+.+.+||+|+++.+..+
T Consensus 1299 lana~d~-ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~-~a~-~~k~~~vf~p~rk~~~~~ 1375 (1674)
T KOG0951|consen 1299 LANARDL-IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVR-HAG-NRKPAIVFLPTRKHARLV 1375 (1674)
T ss_pred hccchhh-ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHH-Hhc-CCCCeEEEeccchhhhhh
Confidence 8 77776 333334455443 45677777765544333322211 12222 222 467899999999999888
Q ss_pred HHHHHHhhcc------------cCCCC-CceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEe
Q 048746 355 DEILKHRTRG------------LGSKI-AELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVID 421 (755)
Q Consensus 355 ~~~L~~~~~~------------~~~~~-~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId 421 (755)
+.-|-..... ..... ..+....=|-+|+..++.-+-..|..|.+.|+|...- -.|+-...--+||
T Consensus 1376 a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvv- 1453 (1674)
T KOG0951|consen 1376 AVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVV- 1453 (1674)
T ss_pred hhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEE-
Confidence 7554332211 00000 0111111288999999999999999999999887655 7787777655566
Q ss_pred CCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEecc--CccccccCCCCCcc
Q 048746 422 PGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYT--LHNYHKDMDDNTVP 483 (755)
Q Consensus 422 ~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~--~~~~~~~l~~~~~p 483 (755)
..+..||.+..... +.+.++..|+.|+|.| .|+|+.+.. +..|.+.+...+.|
T Consensus 1454 ---mgt~~ydg~e~~~~----~y~i~~ll~m~G~a~~--~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1454 ---MGTQYYDGKEHSYE----DYPIAELLQMVGLASG--AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred ---ecceeecccccccc----cCchhHHHHHhhhhcC--CccEEEEecCchHHHHHHhccCcCc
Confidence 67788998887665 8999999999999988 567776664 33444444333333
No 137
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.44 E-value=2.3e-13 Score=123.25 Aligned_cols=133 Identities=22% Similarity=0.302 Sum_probs=87.5
Q ss_pred cCCeEEEEccCCCchhc-cHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeecc-ccCCCCce
Q 048746 145 EYQVLVIVGETGSGKTT-QIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFE-DCTSEKTI 222 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~-~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~-~~~~~~~~ 222 (755)
+++..++-..||+|||. .+|.++.+. ..++.++|++.|||+++.++++.+.. .+ +.+..... .....+..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~-i~~~~rvLvL~PTRvva~em~~aL~~---~~----~~~~t~~~~~~~~g~~~ 74 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREA-IKRRLRVLVLAPTRVVAEEMYEALKG---LP----VRFHTNARMRTHFGSSI 74 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHH-HHTT--EEEEESSHHHHHHHHHHTTT---SS----EEEESTTSS----SSSS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHH-HHccCeEEEecccHHHHHHHHHHHhc---CC----cccCceeeeccccCCCc
Confidence 56778999999999996 477777665 56678999999999999999877643 22 22222111 12345678
Q ss_pred EEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCC
Q 048746 223 LKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLD 286 (755)
Q Consensus 223 I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~ 286 (755)
|-++|.+.+.+.+.+...+.+|++||+||||--+..+-...+.++..... ...++|+||||++
T Consensus 75 i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPP 137 (148)
T PF07652_consen 75 IDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPP 137 (148)
T ss_dssp EEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-T
T ss_pred ccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCC
Confidence 89999999999888876889999999999993222222344445554333 3578999999994
No 138
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.44 E-value=1.4e-11 Score=146.46 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=85.5
Q ss_pred cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccC-CCCHHHHHHHhCCCCCCC
Q 048746 319 ADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYA-NLPTELQAKIFEPTPEGA 397 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~-~l~~~~r~~i~~~f~~g~ 397 (755)
.++.+.....+..+. ..+|++||+++|.+..+.+++.|... ...+ ...| +.+ +.++.+.|+++.
T Consensus 630 ~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~---------~~~~-l~Qg~~~~---~~~l~~~F~~~~ 694 (820)
T PRK07246 630 EVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW---------QVSH-LAQEKNGT---AYNIKKRFDRGE 694 (820)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc---------CCcE-EEeCCCcc---HHHHHHHHHcCC
Confidence 345555666665554 34799999999999999999988642 1222 2223 222 445777888888
Q ss_pred cEEEEeCCcccccCcCCC--eeEEEeCCCcccccccCC-------------CCcccc--cccccCHHhHHhhhcccCCCC
Q 048746 398 RKVVLATNIAETSLTIDG--IKYVIDPGFSKVKSYNPR-------------TGMESL--LVHPISKASAMQRAGRSGRTG 460 (755)
Q Consensus 398 ~~vlvaT~i~~~Gidip~--v~~VId~g~~k~~~~~~~-------------~~~~~l--~~~p~s~~~~~QR~GRaGR~g 460 (755)
..||++|+.+..|||+|+ ...||-.+ .+.-.|. .|-..+ ..-|.....+.|-+||.=|..
T Consensus 695 ~~vLlG~~sFwEGVD~p~~~~~~viI~k---LPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~ 771 (820)
T PRK07246 695 QQILLGLGSFWEGVDFVQADRMIEVITR---LPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRRE 771 (820)
T ss_pred CeEEEecchhhCCCCCCCCCeEEEEEec---CCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCC
Confidence 899999999999999973 44444333 3333221 111111 112555677899999999988
Q ss_pred C--CEEEEec
Q 048746 461 P--GKCFRLY 468 (755)
Q Consensus 461 ~--G~~~~l~ 468 (755)
. |..+.+=
T Consensus 772 ~D~Gvv~ilD 781 (820)
T PRK07246 772 DQKSAVLILD 781 (820)
T ss_pred CCcEEEEEEC
Confidence 4 7655443
No 139
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=9.4e-12 Score=141.93 Aligned_cols=120 Identities=26% Similarity=0.284 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCC-CcE
Q 048746 321 YIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEG-ARK 399 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g-~~~ 399 (755)
...+.+..+...|. .+.||||.|.|.+..+.++..|.+.+ +..-.+++.-...+-. |+. ..| .-.
T Consensus 411 K~~Aii~ei~~~~~--~gqPVLVgT~SIe~SE~ls~~L~~~g---------i~h~vLNAk~~e~EA~-IIa--~AG~~Ga 476 (925)
T PRK12903 411 KWKAVVKEVKRVHK--KGQPILIGTAQVEDSETLHELLLEAN---------IPHTVLNAKQNAREAE-IIA--KAGQKGA 476 (925)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHCC---------CCceeecccchhhHHH-HHH--hCCCCCe
Confidence 34445555555553 46799999999999999999998854 3333455542222222 322 234 346
Q ss_pred EEEeCCcccccCcCCCee--------EEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccC
Q 048746 400 VVLATNIAETSLTIDGIK--------YVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTL 470 (755)
Q Consensus 400 vlvaT~i~~~Gidip~v~--------~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~ 470 (755)
|.||||+|+||-||.--. |||-+.. +.|..-=.|-.|||||.| ||.+-.+.+-
T Consensus 477 VTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTer------------------heSrRIDnQLrGRaGRQGDpGss~f~lSL 538 (925)
T PRK12903 477 ITIATNMAGRGTDIKLSKEVLELGGLYVLGTDK------------------AESRRIDNQLRGRSGRQGDVGESRFFISL 538 (925)
T ss_pred EEEecccccCCcCccCchhHHHcCCcEEEeccc------------------CchHHHHHHHhcccccCCCCCcceEEEec
Confidence 999999999999997322 7776665 778777789999999999 6987766665
Q ss_pred cc
Q 048746 471 HN 472 (755)
Q Consensus 471 ~~ 472 (755)
++
T Consensus 539 eD 540 (925)
T PRK12903 539 DD 540 (925)
T ss_pred ch
Confidence 44
No 140
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.39 E-value=1.2e-11 Score=142.02 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=74.3
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHH---HhCCccc
Q 048746 130 LPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQ---EMGVKLG 204 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~---~~~~~~g 204 (755)
+-++++-.+++-++.-++.-|+...||.||| ..+|.++... .+..|-|+.+...||..-++.+.. .+|..+|
T Consensus 73 lG~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL---~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg 149 (870)
T CHL00122 73 LGLRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNAL---TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVG 149 (870)
T ss_pred hCCCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHh---cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCcee
Confidence 3344444445566555566799999999999 3445554332 355688888999999987776654 3455555
Q ss_pred cEEeeeeeccccCCCCceEEEeCcH-----HHHHHHhCC---CCCCCCCceEeeccc
Q 048746 205 HEVGYSIRFEDCTSEKTILKYMTDG-----MLLREILSE---PNLESYSVLMVDEAH 253 (755)
Q Consensus 205 ~~vg~~~~~~~~~~~~~~I~v~T~g-----~Ll~~l~~~---~~l~~~~~vIiDEaH 253 (755)
...+.....+....-.++|+|+|.. .|.+.+... .....+.+.||||||
T Consensus 150 ~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvD 206 (870)
T CHL00122 150 LIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVD 206 (870)
T ss_pred eeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecch
Confidence 4332111111122346799999985 333333211 135678899999999
No 141
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.38 E-value=9.4e-13 Score=129.21 Aligned_cols=145 Identities=19% Similarity=0.152 Sum_probs=94.8
Q ss_pred CChHHHHHHHHHHHc-------CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCcc
Q 048746 131 PIYPYRDELLQAVNE-------YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKL 203 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~~-------~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~ 203 (755)
.++++|.+++..+.+ ++.+++.+|||||||..+..++..... ++++++|+..|+.|....+........
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~~ 78 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEKY 78 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTSE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhhh
Confidence 468999999999763 689999999999999666655555422 899999999999999988854322211
Q ss_pred ccEE--------e--------eeeeccccCCCCceEEEeCcHHHHHHHhCCC------------CCCCCCceEeeccccc
Q 048746 204 GHEV--------G--------YSIRFEDCTSEKTILKYMTDGMLLREILSEP------------NLESYSVLMVDEAHER 255 (755)
Q Consensus 204 g~~v--------g--------~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~------------~l~~~~~vIiDEaHer 255 (755)
.... + ..............+.+.|...+........ ....+++||+|||| +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH-~ 157 (184)
T PF04851_consen 79 NFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH-H 157 (184)
T ss_dssp EEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG-C
T ss_pred hhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh-h
Confidence 1100 0 0000011123467899999999887764311 24567899999999 4
Q ss_pred CCccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 256 TLSTDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 256 ~~~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
...... .+.+.. .+...+|+||||+
T Consensus 158 ~~~~~~----~~~i~~-~~~~~~l~lTATp 182 (184)
T PF04851_consen 158 YPSDSS----YREIIE-FKAAFILGLTATP 182 (184)
T ss_dssp THHHHH----HHHHHH-SSCCEEEEEESS-
T ss_pred cCCHHH----HHHHHc-CCCCeEEEEEeCc
Confidence 433332 222222 5678899999997
No 142
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.37 E-value=8e-13 Score=111.14 Aligned_cols=72 Identities=36% Similarity=0.547 Sum_probs=69.0
Q ss_pred ceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHH
Q 048746 371 ELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAM 450 (755)
Q Consensus 371 ~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~ 450 (755)
++.+..+||++++++|..+++.|++|..+||++|+++++|+|+|++++||.++. |.+...|.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL------------------PWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC------------------CCCHHHHH
Confidence 478899999999999999999999999999999999999999999999999999 99999999
Q ss_pred hhhcccCCCC
Q 048746 451 QRAGRSGRTG 460 (755)
Q Consensus 451 QR~GRaGR~g 460 (755)
|++||+||.|
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999976
No 143
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.30 E-value=1e-10 Score=129.27 Aligned_cols=313 Identities=18% Similarity=0.165 Sum_probs=184.7
Q ss_pred CChHHHHHHHHHH----HcCCeEEEEccCCCchhccHHH-HHHHhc-ccCCCccccCccHHHHHHHHHHHHHHHh-CCcc
Q 048746 131 PIYPYRDELLQAV----NEYQVLVIVGETGSGKTTQIPQ-YLHEAG-YTKQGKVGCTQPRRVAAMSVAARVSQEM-GVKL 203 (755)
Q Consensus 131 Pl~~~Q~~~l~~i----~~~~~vii~apTGsGKT~~ip~-~l~~~~-~~~~~~ilv~~P~r~la~q~a~~~~~~~-~~~~ 203 (755)
.+.++|-+-+..+ .++-+.|+.-+-|-|||.|-.. +.+... ....|.-+|++|.-.|.. ..+.+++.. +.++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~N-W~~Ef~rf~P~l~~ 245 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDN-WMNEFKRFTPSLNV 245 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHH-HHHHHHHhCCCcce
Confidence 4578898877764 4567899999999999944332 222222 222467889999887754 334555532 3333
Q ss_pred ccEEeee-----eeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEE
Q 048746 204 GHEVGYS-----IRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKL 278 (755)
Q Consensus 204 g~~vg~~-----~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~ 278 (755)
-..+|-. .+-+-......+|+++|.++.++.- +-..--+++++|||||| |.-+....+. +. ++...-..-
T Consensus 246 ~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk-~~lk~~~W~ylvIDEaH-RiKN~~s~L~--~~-lr~f~~~nr 320 (971)
T KOG0385|consen 246 VVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK-SFLKKFNWRYLVIDEAH-RIKNEKSKLS--KI-LREFKTDNR 320 (971)
T ss_pred EEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH-HHHhcCCceEEEechhh-hhcchhhHHH--HH-HHHhcccce
Confidence 3344411 0111112347899999999998752 11112357899999999 8877654433 22 222233345
Q ss_pred EEeccCC---C------------------HHHHHhhhCCCCEEE-----------------------ecCccccce--EE
Q 048746 279 LISSATL---D------------------AEKFSDYFGSAPIFK-----------------------IPGRRYPVE--IH 312 (755)
Q Consensus 279 il~SAT~---~------------------~~~l~~~~~~~~~~~-----------------------~~~~~~~v~--~~ 312 (755)
+++|.|+ + .+.|.+||....... +....-|-. ..
T Consensus 321 LLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~i 400 (971)
T KOG0385|consen 321 LLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELII 400 (971)
T ss_pred eEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeE
Confidence 7778886 2 235556665321000 000000100 00
Q ss_pred EecCCc-------------------c-----chHHH--------------------------------------HHHHHH
Q 048746 313 YTKAPE-------------------A-----DYIDA--------------------------------------AIVTVL 330 (755)
Q Consensus 313 ~~~~~~-------------------~-----~~~~~--------------------------------------~~~~~~ 330 (755)
|..... . ..+.. .+..++
T Consensus 401 yvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL 480 (971)
T KOG0385|consen 401 YVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLL 480 (971)
T ss_pred eccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHH
Confidence 111000 0 00000 011111
Q ss_pred HHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCC---cEEEEeCCcc
Q 048746 331 QIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGA---RKVVLATNIA 407 (755)
Q Consensus 331 ~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~---~~vlvaT~i~ 407 (755)
.- ....+.+||||-.=.. +-+.|...+. ..++..+-+.|+++.++|...++.|.... .-.+++|-+.
T Consensus 481 ~~-Lk~~GhRVLIFSQmt~----mLDILeDyc~-----~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAG 550 (971)
T KOG0385|consen 481 PK-LKEQGHRVLIFSQMTR----MLDILEDYCM-----LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAG 550 (971)
T ss_pred HH-HHhCCCeEEEeHHHHH----HHHHHHHHHH-----hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccc
Confidence 11 1233678999964333 3444444331 14588999999999999999999986543 3468999999
Q ss_pred cccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCcccc
Q 048746 408 ETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYH 474 (755)
Q Consensus 408 ~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~ 474 (755)
+-|||+-..+.||-||- -|| |..--++.+|+-|.|-..+=.+|||++++..+
T Consensus 551 GLGINL~aADtVIlyDS----DWN-----------PQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 551 GLGINLTAADTVILYDS----DWN-----------PQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred ccccccccccEEEEecC----CCC-----------chhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 99999999999995543 222 66667788899999988899999999987553
No 144
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.25 E-value=2.9e-10 Score=130.47 Aligned_cols=124 Identities=18% Similarity=0.199 Sum_probs=76.8
Q ss_pred hcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhc--cHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHH---HhCC
Q 048746 127 RKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTT--QIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQ---EMGV 201 (755)
Q Consensus 127 ~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~--~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~---~~~~ 201 (755)
+..+-+.++-.+++-++.=++--|....||-|||. .+|.++.. + .+..|-|+.+..-||..=++.+.. .+|.
T Consensus 79 ~R~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnA--L-~GkgVhVVTvNdYLA~RDae~m~~vy~~LGL 155 (939)
T PRK12902 79 KRVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNA--L-TGKGVHVVTVNDYLARRDAEWMGQVHRFLGL 155 (939)
T ss_pred HHHhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHh--h-cCCCeEEEeCCHHHHHhHHHHHHHHHHHhCC
Confidence 34455555555566665445556899999999993 34444432 2 244677778888898876666554 3455
Q ss_pred ccccEEeeeeeccccCCCCceEEEeCcHHH-----HHHHhCC---CCCCCCCceEeeccc
Q 048746 202 KLGHEVGYSIRFEDCTSEKTILKYMTDGML-----LREILSE---PNLESYSVLMVDEAH 253 (755)
Q Consensus 202 ~~g~~vg~~~~~~~~~~~~~~I~v~T~g~L-----l~~l~~~---~~l~~~~~vIiDEaH 253 (755)
.+|...+.....+....-.++|+|+|..-| .+.+... .....+.+.||||||
T Consensus 156 tvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvD 215 (939)
T PRK12902 156 SVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVD 215 (939)
T ss_pred eEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccc
Confidence 555332211111122234789999999665 4554322 245778899999999
No 145
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.25 E-value=9.9e-10 Score=133.10 Aligned_cols=137 Identities=20% Similarity=0.267 Sum_probs=89.4
Q ss_pred chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcE
Q 048746 320 DYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARK 399 (755)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~ 399 (755)
.+.......+..+... .+|++|||++|.+..+.+++.|...... .++.+.. . ++....|.++++.|+.+...
T Consensus 735 ~~~~~la~~i~~l~~~-~~g~~LVLFtSy~~l~~v~~~l~~~~~~-----~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~ 806 (928)
T PRK08074 735 EYIEEVAAYIAKIAKA-TKGRMLVLFTSYEMLKKTYYNLKNEEEL-----EGYVLLA-Q-GVSSGSRARLTKQFQQFDKA 806 (928)
T ss_pred HHHHHHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHhhcccc-----cCceEEe-c-CCCCCCHHHHHHHHHhcCCe
Confidence 4555566666665443 3689999999999999999999764310 1122222 2 23223467788888888889
Q ss_pred EEEeCCcccccCcCCC--eeEEEeCCCcccccccCC-------------CCcccc--cccccCHHhHHhhhcccCCCCC-
Q 048746 400 VVLATNIAETSLTIDG--IKYVIDPGFSKVKSYNPR-------------TGMESL--LVHPISKASAMQRAGRSGRTGP- 461 (755)
Q Consensus 400 vlvaT~i~~~Gidip~--v~~VId~g~~k~~~~~~~-------------~~~~~l--~~~p~s~~~~~QR~GRaGR~g~- 461 (755)
||++|+.+..|||+|+ ++.||-.++ +.-.|. .|...+ ...|.....+.|-+||.=|...
T Consensus 807 iLlG~~sFwEGVD~pg~~l~~viI~kL---PF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D 883 (928)
T PRK08074 807 ILLGTSSFWEGIDIPGDELSCLVIVRL---PFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETD 883 (928)
T ss_pred EEEecCcccCccccCCCceEEEEEecC---CCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCc
Confidence 9999999999999997 467765554 222121 111111 1125556778999999999884
Q ss_pred -CEEEEe
Q 048746 462 -GKCFRL 467 (755)
Q Consensus 462 -G~~~~l 467 (755)
|..+.|
T Consensus 884 ~G~v~il 890 (928)
T PRK08074 884 RGTVFVL 890 (928)
T ss_pred eEEEEEe
Confidence 665544
No 146
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.24 E-value=3.1e-09 Score=121.13 Aligned_cols=136 Identities=15% Similarity=0.063 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCC----C
Q 048746 321 YIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPE----G 396 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~----g 396 (755)
+.+.....+..+... ..|.+||.++|...++.+++.|..... + .+.+.|..++ +...++.|+. |
T Consensus 454 ~~~~~~~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~--------~-~~l~qg~~~~--~~~l~~~f~~~~~~~ 521 (636)
T TIGR03117 454 WLENVSLSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIP--------A-EIVIQSEKNR--LASAEQQFLALYANG 521 (636)
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcC--------C-CEEEeCCCcc--HHHHHHHHHHhhcCC
Confidence 444455555665444 478999999999999999999976431 2 2334565532 2334444544 5
Q ss_pred CcEEEEeCCcccccCcC--------C--CeeEEEeCCCcccccccCC--------CCcccccccccCHHhHHhhhcccCC
Q 048746 397 ARKVVLATNIAETSLTI--------D--GIKYVIDPGFSKVKSYNPR--------TGMESLLVHPISKASAMQRAGRSGR 458 (755)
Q Consensus 397 ~~~vlvaT~i~~~Gidi--------p--~v~~VId~g~~k~~~~~~~--------~~~~~l~~~p~s~~~~~QR~GRaGR 458 (755)
...||++|+.+-.|||+ | .++.||-.-+.-. .-||- .|.......|...-.+.|-+||.=|
T Consensus 522 ~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~-~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR 600 (636)
T TIGR03117 522 IQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFG-LNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVR 600 (636)
T ss_pred CCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCC-cCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceee
Confidence 78999999999999999 2 3677764333111 11221 2222222346666778899999988
Q ss_pred CC----CCEEEEecc
Q 048746 459 TG----PGKCFRLYT 469 (755)
Q Consensus 459 ~g----~G~~~~l~~ 469 (755)
.. .|....|=+
T Consensus 601 ~~~D~~~G~i~ilD~ 615 (636)
T TIGR03117 601 HPDMPQNRRIHMLDG 615 (636)
T ss_pred cCCCcCceEEEEEeC
Confidence 75 255444433
No 147
>COG4889 Predicted helicase [General function prediction only]
Probab=99.23 E-value=1.9e-11 Score=135.97 Aligned_cols=320 Identities=15% Similarity=0.150 Sum_probs=176.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHcC----CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHH
Q 048746 121 EMLQEERKTLPIYPYRDELLQAVNEY----QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVS 196 (755)
Q Consensus 121 ~~l~~~~~~lPl~~~Q~~~l~~i~~~----~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~ 196 (755)
.++.-.....| .++|++++++..++ ..-=++...|+|||+....+..... ..++++++|...|..|..+...
T Consensus 152 ~nl~l~~~kk~-R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala---~~~iL~LvPSIsLLsQTlrew~ 227 (1518)
T COG4889 152 DNLPLKKPKKP-RPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALA---AARILFLVPSISLLSQTLREWT 227 (1518)
T ss_pred cccccCCCCCC-ChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHh---hhheEeecchHHHHHHHHHHHh
Confidence 34444445566 99999999986542 2223344579999966555543321 2589999999999999988876
Q ss_pred HHhCCcccc--E-----Ee------------eeee--c--------cccCCCCceEEEeCcHHHHHHHh-CCCCCCCCCc
Q 048746 197 QEMGVKLGH--E-----VG------------YSIR--F--------EDCTSEKTILKYMTDGMLLREIL-SEPNLESYSV 246 (755)
Q Consensus 197 ~~~~~~~g~--~-----vg------------~~~~--~--------~~~~~~~~~I~v~T~g~Ll~~l~-~~~~l~~~~~ 246 (755)
..-...+.. . ++ +.+. . ......+--|+++|.+.+.+.-. ...-+..+++
T Consensus 228 ~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDl 307 (1518)
T COG4889 228 AQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDL 307 (1518)
T ss_pred hccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccE
Confidence 643222211 0 11 0000 0 00011234578888887766432 2235788999
Q ss_pred eEeecccccCCccchHHHHHHHHHhc-----CCCcEEEEeccCCCH-----HHHHh-------------hhCCCCEEEec
Q 048746 247 LMVDEAHERTLSTDILFGLLKDLIKF-----RSDLKLLISSATLDA-----EKFSD-------------YFGSAPIFKIP 303 (755)
Q Consensus 247 vIiDEaHer~~~~d~~~~~l~~~~~~-----~~~~~~il~SAT~~~-----~~l~~-------------~~~~~~~~~~~ 303 (755)
||.|||| |+......-.--..+.+. -+..+.+-|+||+.. +.-++ .|+ +.++.-
T Consensus 308 iicDEAH-RTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fG--eef~rl 384 (1518)
T COG4889 308 IICDEAH-RTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFG--EEFHRL 384 (1518)
T ss_pred EEecchh-ccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhc--hhhhcc
Confidence 9999999 654322111000000000 123567889999821 10000 011 000000
Q ss_pred Cc----------cccceEE-------------EecCCccchHHHHHHHHHHHH----hh--------------CCCCCEE
Q 048746 304 GR----------RYPVEIH-------------YTKAPEADYIDAAIVTVLQIH----VT--------------QSPGDIL 342 (755)
Q Consensus 304 ~~----------~~~v~~~-------------~~~~~~~~~~~~~~~~~~~~~----~~--------------~~~~~iL 342 (755)
|- -|.|-+. ....+.....-.....++-.+ .. .+..+.+
T Consensus 385 ~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAI 464 (1518)
T COG4889 385 GFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAI 464 (1518)
T ss_pred cHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHH
Confidence 00 0001000 001111111000111111111 00 0113567
Q ss_pred EEcCCHHHHHHHHHHHHHhhc----ccCCCCCc--eEEEeccCCCCHHHHHHHh---CCCCCCCcEEEEeCCcccccCcC
Q 048746 343 VFLTGQEEIETADEILKHRTR----GLGSKIAE--LIICPIYANLPTELQAKIF---EPTPEGARKVVLATNIAETSLTI 413 (755)
Q Consensus 343 VF~~~~~~~~~l~~~L~~~~~----~~~~~~~~--~~v~~lh~~l~~~~r~~i~---~~f~~g~~~vlvaT~i~~~Gidi 413 (755)
-||.+.++-..+++.+..... .+-.+..+ +.+-...|.|...+|...+ ..|.+..++||----.+..|||+
T Consensus 465 aF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDV 544 (1518)
T COG4889 465 AFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDV 544 (1518)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCc
Confidence 888887776666655543221 11112233 4444556889988886554 35688899999999999999999
Q ss_pred CCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEE
Q 048746 414 DGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCF 465 (755)
Q Consensus 414 p~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~ 465 (755)
|..+-||-++. ..|..+.+|-+||.-|..+|+-|
T Consensus 545 PaLDsViFf~p------------------r~smVDIVQaVGRVMRKa~gK~y 578 (1518)
T COG4889 545 PALDSVIFFDP------------------RSSMVDIVQAVGRVMRKAKGKKY 578 (1518)
T ss_pred cccceEEEecC------------------chhHHHHHHHHHHHHHhCcCCcc
Confidence 99999996555 67889999999999999987643
No 148
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.23 E-value=1.4e-10 Score=133.80 Aligned_cols=136 Identities=11% Similarity=0.016 Sum_probs=88.9
Q ss_pred EEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhC-CccccEEeeee------eccccCCCCce
Q 048746 150 VIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMG-VKLGHEVGYSI------RFEDCTSEKTI 222 (755)
Q Consensus 150 ii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~-~~~g~~vg~~~------~~~~~~~~~~~ 222 (755)
+..+.+|||||-....++... +..++.+|+++|...|+.|+.+++.+.+| ..+....+... .+.....+..+
T Consensus 164 i~~~~~GSGKTevyl~~i~~~-l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~ 242 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAAT-LRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR 242 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHH-HHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc
Confidence 334446999996555555443 34466899999999999999999999887 44332222100 11112345678
Q ss_pred EEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHH----HHHHHHHhcCCCcEEEEeccCCCHHHHHh
Q 048746 223 LKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILF----GLLKDLIKFRSDLKLLISSATLDAEKFSD 292 (755)
Q Consensus 223 I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~----~~l~~~~~~~~~~~~il~SAT~~~~~l~~ 292 (755)
|+++|-..+. .-+.++++|||||=|+-+...+-.. --+..+.....+..+|+.|||+..+.+..
T Consensus 243 IViGtRSAvF------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 243 VVVGTRSAVF------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred EEEEcceeEE------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHH
Confidence 9999976553 2578999999999995444433110 11122223446789999999998887654
No 149
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.16 E-value=2.6e-09 Score=121.58 Aligned_cols=292 Identities=20% Similarity=0.190 Sum_probs=171.0
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCC-CCce
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTS-EKTI 222 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~-~~~~ 222 (755)
......+|.||.|||||+.+-.++......+..+++++.-||.|+.+++.++... +.. ..+-|....+.... ...+
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~-~l~--gFv~Y~d~~~~~i~~~~~~ 123 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKA-GLS--GFVNYLDSDDYIIDGRPYD 123 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhc-CCC--cceeeeccccccccccccC
Confidence 4567899999999999998888887653345679999999999999999999763 211 12222221111111 1234
Q ss_pred EEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCcc---------chHHHHHHHHHhcCCCcEEEEeccCCCHH---HH
Q 048746 223 LKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLST---------DILFGLLKDLIKFRSDLKLLISSATLDAE---KF 290 (755)
Q Consensus 223 I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~---------d~~~~~l~~~~~~~~~~~~il~SAT~~~~---~l 290 (755)
-++++-+.|.+.. ...+.++++|||||+- -.+.. .....+++.++ +...++|+|-||++.. -+
T Consensus 124 rLivqIdSL~R~~--~~~l~~yDvVIIDEv~-svL~qL~S~Tm~~~~~v~~~L~~lI--~~ak~VI~~DA~ln~~tvdFl 198 (824)
T PF02399_consen 124 RLIVQIDSLHRLD--GSLLDRYDVVIIDEVM-SVLNQLFSPTMRQREEVDNLLKELI--RNAKTVIVMDADLNDQTVDFL 198 (824)
T ss_pred eEEEEehhhhhcc--cccccccCEEEEehHH-HHHHHHhHHHHhhHHHHHHHHHHHH--HhCCeEEEecCCCCHHHHHHH
Confidence 4455566665542 3467889999999997 11111 11112222322 3356899999999644 44
Q ss_pred HhhhCCCCEEEecCc----cccc-eEEEecC-----------Cc-------------c---------chHHHHHHHHHHH
Q 048746 291 SDYFGSAPIFKIPGR----RYPV-EIHYTKA-----------PE-------------A---------DYIDAAIVTVLQI 332 (755)
Q Consensus 291 ~~~~~~~~~~~~~~~----~~~v-~~~~~~~-----------~~-------------~---------~~~~~~~~~~~~~ 332 (755)
+..-++.++..+.+. .|.- .-.+.+. +. . .........+..
T Consensus 199 ~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~- 277 (824)
T PF02399_consen 199 ASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLA- 277 (824)
T ss_pred HHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHH-
Confidence 444444444333221 1100 0001000 00 0 000011111111
Q ss_pred HhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCc
Q 048746 333 HVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLT 412 (755)
Q Consensus 333 ~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gid 412 (755)
.-..+.+|-||++|....+.+++...... ..|+.++|.-+.. .+. . =++.+|++=|++...|++
T Consensus 278 -~L~~gknIcvfsSt~~~~~~v~~~~~~~~---------~~Vl~l~s~~~~~---dv~-~--W~~~~VviYT~~itvG~S 341 (824)
T PF02399_consen 278 -RLNAGKNICVFSSTVSFAEIVARFCARFT---------KKVLVLNSTDKLE---DVE-S--WKKYDVVIYTPVITVGLS 341 (824)
T ss_pred -HHhCCCcEEEEeChHHHHHHHHHHHHhcC---------CeEEEEcCCCCcc---ccc-c--ccceeEEEEeceEEEEec
Confidence 11236778899999998888888777642 4567777766555 222 2 246899999999999999
Q ss_pred CCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCcc
Q 048746 413 IDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHN 472 (755)
Q Consensus 413 ip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~ 472 (755)
+....+=--|++.|...+ -.+..+..|++||+-.......|..+....
T Consensus 342 f~~~HF~~~f~yvk~~~~------------gpd~~s~~Q~lgRvR~l~~~ei~v~~d~~~ 389 (824)
T PF02399_consen 342 FEEKHFDSMFAYVKPMSY------------GPDMVSVYQMLGRVRSLLDNEIYVYIDASG 389 (824)
T ss_pred cchhhceEEEEEecCCCC------------CCcHHHHHHHHHHHHhhccCeEEEEEeccc
Confidence 986533211222111111 356778999999998888777777776543
No 150
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.07 E-value=1.3e-08 Score=113.68 Aligned_cols=132 Identities=20% Similarity=0.261 Sum_probs=100.1
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCc-E-EEEeCCcccccCcCCC
Q 048746 338 PGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGAR-K-VVLATNIAETSLTIDG 415 (755)
Q Consensus 338 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~-~-vlvaT~i~~~Gidip~ 415 (755)
+.++|+|..++.....+...|... .++..+.+.|..+...|...++.|.++.. . .|++|-+.+-|+|+-+
T Consensus 546 g~rvllFsqs~~mLdilE~fL~~~--------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTg 617 (923)
T KOG0387|consen 546 GDRVLLFSQSRQMLDILESFLRRA--------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTG 617 (923)
T ss_pred CCEEEEehhHHHHHHHHHHHHHhc--------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEeccccccccccc
Confidence 568999999999999888888741 45889999999999999999999987763 3 5789999999999999
Q ss_pred eeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCccccccCCCCCccchhccCchHHHH
Q 048746 416 IKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYHKDMDDNTVPEIQRTNLANVVL 495 (755)
Q Consensus 416 v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~~~l~~~~~pei~r~~l~~~~L 495 (755)
.+-||-||. .-+ |.+-.++.-|+=|-|-...=.+|||.+....++.. -.-.|....|.+.+|
T Consensus 618 AnRVIIfDP--------dWN-------PStD~QAreRawRiGQkkdV~VYRL~t~gTIEEki---Y~rQI~Kq~Ltn~il 679 (923)
T KOG0387|consen 618 ANRVIIFDP--------DWN-------PSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKI---YHRQIFKQFLTNRIL 679 (923)
T ss_pred CceEEEECC--------CCC-------CccchHHHHHHHhhcCccceEEEEEecCCcHHHHH---HHHHHHHHHHHHHHh
Confidence 988885443 333 66667777788787777778899999987654211 112344555555554
No 151
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.06 E-value=1.1e-08 Score=116.86 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=69.9
Q ss_pred ceEEEeccCCCCHHHHHHHhCCCCCC--CcE-EEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHH
Q 048746 371 ELIICPIYANLPTELQAKIFEPTPEG--ARK-VVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKA 447 (755)
Q Consensus 371 ~~~v~~lh~~l~~~~r~~i~~~f~~g--~~~-vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~ 447 (755)
+..++.+||.|+..+|+.+++.|.+. ..+ .|.+|-+.+.||++-+...||-+|. ..+++
T Consensus 619 g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~------------------dWNPa 680 (776)
T KOG0390|consen 619 GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDP------------------DWNPA 680 (776)
T ss_pred CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCC------------------CCCch
Confidence 47899999999999999999999543 324 4678899999999999999997777 66677
Q ss_pred hHHhhhcccCCCC---CCEEEEeccCcccc
Q 048746 448 SAMQRAGRSGRTG---PGKCFRLYTLHNYH 474 (755)
Q Consensus 448 ~~~QR~GRaGR~g---~G~~~~l~~~~~~~ 474 (755)
.=.|-++||=|.| +-..|+|.+....+
T Consensus 681 ~d~QAmaR~~RdGQKk~v~iYrLlatGtiE 710 (776)
T KOG0390|consen 681 VDQQAMARAWRDGQKKPVYIYRLLATGTIE 710 (776)
T ss_pred hHHHHHHHhccCCCcceEEEEEeecCCCch
Confidence 7778888888877 57788998866543
No 152
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.97 E-value=2.5e-07 Score=108.97 Aligned_cols=136 Identities=15% Similarity=0.219 Sum_probs=85.7
Q ss_pred cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCC----C
Q 048746 319 ADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPT----P 394 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f----~ 394 (755)
..+.......+..+.. . +|.+|||++|.+..+.++..|.... +.. +..+|.. .+..+++.| .
T Consensus 517 ~~~~~~~~~~i~~l~~-~-~gg~LVlFtSy~~l~~v~~~l~~~~--------~~~-ll~Q~~~---~~~~ll~~f~~~~~ 582 (697)
T PRK11747 517 EAHTAEMAEFLPELLE-K-HKGSLVLFASRRQMQKVADLLPRDL--------RLM-LLVQGDQ---PRQRLLEKHKKRVD 582 (697)
T ss_pred HHHHHHHHHHHHHHHh-c-CCCEEEEeCcHHHHHHHHHHHHHhc--------CCc-EEEeCCc---hHHHHHHHHHHHhc
Confidence 3456666667777666 3 5569999999999999999987532 112 2235543 345555444 4
Q ss_pred CCCcEEEEeCCcccccCcCCC--eeEEEeCCCcccccccCC----------CCcccc--cccccCHHhHHhhhcccCCCC
Q 048746 395 EGARKVVLATNIAETSLTIDG--IKYVIDPGFSKVKSYNPR----------TGMESL--LVHPISKASAMQRAGRSGRTG 460 (755)
Q Consensus 395 ~g~~~vlvaT~i~~~Gidip~--v~~VId~g~~k~~~~~~~----------~~~~~l--~~~p~s~~~~~QR~GRaGR~g 460 (755)
.|...||++|..+..|||+|+ ++.||-.++.-..--||. .|...+ ...|.....+.|-+||.=|..
T Consensus 583 ~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~ 662 (697)
T PRK11747 583 EGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSE 662 (697)
T ss_pred cCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccC
Confidence 577889999999999999987 677876554211111111 111111 112445556889999999987
Q ss_pred C--CEEEEec
Q 048746 461 P--GKCFRLY 468 (755)
Q Consensus 461 ~--G~~~~l~ 468 (755)
. |..+.+=
T Consensus 663 ~D~G~i~ilD 672 (697)
T PRK11747 663 QDRGRVTILD 672 (697)
T ss_pred CceEEEEEEc
Confidence 4 6655443
No 153
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.90 E-value=2.8e-08 Score=115.61 Aligned_cols=136 Identities=17% Similarity=0.183 Sum_probs=97.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCC---CcEEEEeCCcccccCcC
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEG---ARKVVLATNIAETSLTI 413 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g---~~~vlvaT~i~~~Gidi 413 (755)
.+.+||||-.=....+-|+++|..+. +..--|.|++..+.|+.+++.|..- ..-.|+||-+.+-|||+
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~---------ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINL 768 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRG---------YPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINL 768 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcC---------CcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccc
Confidence 35689999888888888888888754 6677789999999999999999543 35679999999999999
Q ss_pred CCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCccccccCCCCCccchhccCchHH
Q 048746 414 DGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYHKDMDDNTVPEIQRTNLANV 493 (755)
Q Consensus 414 p~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~~~l~~~~~pei~r~~l~~~ 493 (755)
-..+.||-||- -|| |.+--++.=|+-|.|-...=.+|||+|+..++..+.+.. -+..-|+.+
T Consensus 769 atADTVIIFDS----DWN-----------PQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERA---k~KmvLD~a 830 (1373)
T KOG0384|consen 769 ATADTVIIFDS----DWN-----------PQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERA---KLKMVLDHA 830 (1373)
T ss_pred cccceEEEeCC----CCC-----------cchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHH---HHHhhhHHH
Confidence 99998885554 222 444444455555555555678999999998865432211 123456666
Q ss_pred HHHHHH
Q 048746 494 VLILKS 499 (755)
Q Consensus 494 ~L~l~~ 499 (755)
|++.-.
T Consensus 831 VIQ~m~ 836 (1373)
T KOG0384|consen 831 VIQRMD 836 (1373)
T ss_pred HHHhhc
Confidence 666544
No 154
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.85 E-value=2.6e-07 Score=98.13 Aligned_cols=270 Identities=20% Similarity=0.215 Sum_probs=153.0
Q ss_pred ChHHHHHHHHH-HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeee
Q 048746 132 IYPYRDELLQA-VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYS 210 (755)
Q Consensus 132 l~~~Q~~~l~~-i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~ 210 (755)
+.|+|.+-+.. +..|..+++.-+-|-|||.|+..+..- +.....++|++|--. -...++.+...++.-.-..+-
T Consensus 199 LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~y--yraEwplliVcPAsv-rftWa~al~r~lps~~pi~vv-- 273 (689)
T KOG1000|consen 199 LLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARY--YRAEWPLLIVCPASV-RFTWAKALNRFLPSIHPIFVV-- 273 (689)
T ss_pred hCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHH--HhhcCcEEEEecHHH-hHHHHHHHHHhcccccceEEE--
Confidence 46789888776 788899999999999999655433221 122346888889743 344555555544432211111
Q ss_pred eecccc---CCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCcc------chHHHHHHHHHhcCCCcEEEEe
Q 048746 211 IRFEDC---TSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLST------DILFGLLKDLIKFRSDLKLLIS 281 (755)
Q Consensus 211 ~~~~~~---~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~------d~~~~~l~~~~~~~~~~~~il~ 281 (755)
.+..+. ......|.|++.+++..+- .--.-..+.+||+||.| .+.. .....+++. -.++|++
T Consensus 274 ~~~~D~~~~~~t~~~v~ivSye~ls~l~-~~l~~~~~~vvI~DEsH--~Lk~sktkr~Ka~~dllk~------akhvILL 344 (689)
T KOG1000|consen 274 DKSSDPLPDVCTSNTVAIVSYEQLSLLH-DILKKEKYRVVIFDESH--MLKDSKTKRTKAATDLLKV------AKHVILL 344 (689)
T ss_pred ecccCCccccccCCeEEEEEHHHHHHHH-HHHhcccceEEEEechh--hhhccchhhhhhhhhHHHH------hhheEEe
Confidence 111111 1123567788888765431 11122348999999999 2221 122222222 3469999
Q ss_pred ccCCCHHHHHhhh----------------------CCCC---EEEecCc-------------------------ccc---
Q 048746 282 SATLDAEKFSDYF----------------------GSAP---IFKIPGR-------------------------RYP--- 308 (755)
Q Consensus 282 SAT~~~~~l~~~~----------------------~~~~---~~~~~~~-------------------------~~~--- 308 (755)
|.|+...+=.+.| .+.. .+...|. ..|
T Consensus 345 SGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKr 424 (689)
T KOG1000|consen 345 SGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKR 424 (689)
T ss_pred cCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 9998322111111 0000 0000000 001
Q ss_pred ceEEEecCCccc-----hHHHH---------------------------HHHHHHHH------hhCCCCCEEEEcCCHHH
Q 048746 309 VEIHYTKAPEAD-----YIDAA---------------------------IVTVLQIH------VTQSPGDILVFLTGQEE 350 (755)
Q Consensus 309 v~~~~~~~~~~~-----~~~~~---------------------------~~~~~~~~------~~~~~~~iLVF~~~~~~ 350 (755)
-++.|......+ .+.+. +..+.+.. ...++.+.+||+....-
T Consensus 425 r~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~v 504 (689)
T KOG1000|consen 425 REVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIV 504 (689)
T ss_pred eEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHH
Confidence 111121111100 00000 01111111 23446789999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCC-cEE-EEeCCcccccCcCCCeeEEEeCCC
Q 048746 351 IETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGA-RKV-VLATNIAETSLTIDGIKYVIDPGF 424 (755)
Q Consensus 351 ~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~-~~v-lvaT~i~~~Gidip~v~~VId~g~ 424 (755)
.+.+...+.++. +....+.|..++.+|....+.|.... .+| |++-.+++.|+|+...+.||-..+
T Consensus 505 Ld~Iq~~~~~r~---------vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL 571 (689)
T KOG1000|consen 505 LDTIQVEVNKRK---------VGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAEL 571 (689)
T ss_pred HHHHHHHHHHcC---------CCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEe
Confidence 999998888843 66777899999999999999997554 343 677788999999999999995444
No 155
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.76 E-value=8.3e-07 Score=105.00 Aligned_cols=137 Identities=17% Similarity=0.180 Sum_probs=88.9
Q ss_pred chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCc-
Q 048746 320 DYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGAR- 398 (755)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~- 398 (755)
.........+..+.... ++++|||++|.+..+.+.+.+..... ...+..+|..+.. ..++.|..+.-
T Consensus 462 ~~~~~~~~~i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~~--------~~~v~~q~~~~~~---~~l~~f~~~~~~ 529 (654)
T COG1199 462 ELLAKLAAYLREILKAS-PGGVLVLFPSYEYLKRVAERLKDERS--------TLPVLTQGEDERE---ELLEKFKASGEG 529 (654)
T ss_pred HHHHHHHHHHHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcCc--------cceeeecCCCcHH---HHHHHHHHhcCC
Confidence 45556666666665555 56999999999999999999887431 1244556666555 44444544433
Q ss_pred EEEEeCCcccccCcCCCe--eEEEeCCCcccc----------cccCCCC--cccccccccCHHhHHhhhcccCCCCC--C
Q 048746 399 KVVLATNIAETSLTIDGI--KYVIDPGFSKVK----------SYNPRTG--MESLLVHPISKASAMQRAGRSGRTGP--G 462 (755)
Q Consensus 399 ~vlvaT~i~~~Gidip~v--~~VId~g~~k~~----------~~~~~~~--~~~l~~~p~s~~~~~QR~GRaGR~g~--G 462 (755)
.++|+|..+..|||+|+= +.||-.|+.-.. .|..+.| -......|.......|-+||+=|.-. |
T Consensus 530 ~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G 609 (654)
T COG1199 530 LILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRG 609 (654)
T ss_pred eEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCce
Confidence 899999999999999874 556654442111 1121222 11122336677888999999999764 6
Q ss_pred EEEEec
Q 048746 463 KCFRLY 468 (755)
Q Consensus 463 ~~~~l~ 468 (755)
.++.+=
T Consensus 610 ~ivllD 615 (654)
T COG1199 610 VIVLLD 615 (654)
T ss_pred EEEEec
Confidence 666553
No 156
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.69 E-value=2.7e-07 Score=107.30 Aligned_cols=111 Identities=22% Similarity=0.325 Sum_probs=83.3
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCC-CcEE-EEeCCcccccCcCCCe
Q 048746 339 GDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEG-ARKV-VLATNIAETSLTIDGI 416 (755)
Q Consensus 339 ~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g-~~~v-lvaT~i~~~Gidip~v 416 (755)
.++||||.-+..++-+.+-|-+.. .+.+....+.|+.++.+|.++.+.|.++ .++| +++|.+.+-|+|+.+.
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~------mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGA 1414 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKY------MPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGA 1414 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhh------cCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCC
Confidence 579999999999988887776532 2456677899999999999999999988 5776 5788999999999999
Q ss_pred eEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC---CCEEEEeccCccc
Q 048746 417 KYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG---PGKCFRLYTLHNY 473 (755)
Q Consensus 417 ~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g---~G~~~~l~~~~~~ 473 (755)
+.||-..- -|| |..- .|-.-||-|-| .=-+|||+++...
T Consensus 1415 DTVVFvEH----DWN-----------PMrD---LQAMDRAHRIGQKrvVNVyRlItrGTL 1456 (1549)
T KOG0392|consen 1415 DTVVFVEH----DWN-----------PMRD---LQAMDRAHRIGQKRVVNVYRLITRGTL 1456 (1549)
T ss_pred ceEEEEec----CCC-----------chhh---HHHHHHHHhhcCceeeeeeeehhcccH
Confidence 99993322 222 3333 45555555555 4558888887654
No 157
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.63 E-value=4.6e-07 Score=105.71 Aligned_cols=194 Identities=25% Similarity=0.262 Sum_probs=126.0
Q ss_pred CceEeecccccCCccchHHHHHHHHHhcC----------------------CCcEEEEeccCC--CHHHHHhhhCCCCEE
Q 048746 245 SVLMVDEAHERTLSTDILFGLLKDLIKFR----------------------SDLKLLISSATL--DAEKFSDYFGSAPIF 300 (755)
Q Consensus 245 ~~vIiDEaHer~~~~d~~~~~l~~~~~~~----------------------~~~~~il~SAT~--~~~~l~~~~~~~~~~ 300 (755)
.++||||.-.|.....-+..=+...+... --.++-+||.|. ....|.+.++ -+++
T Consensus 511 kV~IVDe~TGRim~gRr~sdGLHQAIEAKE~V~I~~e~qT~AtIT~QnyFR~Y~kLsGMTGTA~tea~Ef~~IY~-L~Vv 589 (1112)
T PRK12901 511 KVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFRMYHKLAGMTGTAETEAGEFWDIYK-LDVV 589 (1112)
T ss_pred EEEEEeCCCCccCCCCccchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhC-CCEE
Confidence 56789998777655543333333332211 113688999998 4456777665 4577
Q ss_pred EecCccccc-----eEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEE
Q 048746 301 KIPGRRYPV-----EIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIIC 375 (755)
Q Consensus 301 ~~~~~~~~v-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~ 375 (755)
.+|....-. +..|. ....+..+.+..+..+|. .+.||||-+.|.+..+.++..|...+ +..-
T Consensus 590 ~IPTnrP~~R~D~~D~vy~--t~~eK~~Aii~ei~~~~~--~GrPVLVGT~SVe~SE~lS~~L~~~g---------I~H~ 656 (1112)
T PRK12901 590 VIPTNRPIARKDKEDLVYK--TKREKYNAVIEEITELSE--AGRPVLVGTTSVEISELLSRMLKMRK---------IPHN 656 (1112)
T ss_pred ECCCCCCcceecCCCeEec--CHHHHHHHHHHHHHHHHH--CCCCEEEEeCcHHHHHHHHHHHHHcC---------CcHH
Confidence 777642111 12222 223445666777777665 46899999999999999999998854 3222
Q ss_pred eccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCC--------CeeEEEeCCCcccccccCCCCcccccccccCHH
Q 048746 376 PIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTID--------GIKYVIDPGFSKVKSYNPRTGMESLLVHPISKA 447 (755)
Q Consensus 376 ~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip--------~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~ 447 (755)
.+++.....+-.-|-+.-+. -.|-||||+|+||-||. +=-+||-+.. +.|..
T Consensus 657 VLNAK~h~~EAeIVA~AG~~--GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTer------------------heSrR 716 (1112)
T PRK12901 657 VLNAKLHQKEAEIVAEAGQP--GTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTER------------------HESRR 716 (1112)
T ss_pred HhhccchhhHHHHHHhcCCC--CcEEEeccCcCCCcCcccchhhHHcCCCEEEEccC------------------CCcHH
Confidence 34444333443334343333 35899999999999996 2236665544 88899
Q ss_pred hHHhhhcccCCCC-CCEEEEeccCcc
Q 048746 448 SAMQRAGRSGRTG-PGKCFRLYTLHN 472 (755)
Q Consensus 448 ~~~QR~GRaGR~g-~G~~~~l~~~~~ 472 (755)
--.|-.|||||.| ||.+-.+.+-++
T Consensus 717 ID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 717 VDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred HHHHHhcccccCCCCCcceEEEEccc
Confidence 9999999999999 798777776554
No 158
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.58 E-value=5.5e-06 Score=90.31 Aligned_cols=227 Identities=15% Similarity=0.050 Sum_probs=147.0
Q ss_pred CceEEEeCcHHHHHHHhC------C-CCCCCCCceEeecccc-cCCccchHHHHHHHHHhcCC-----------------
Q 048746 220 KTILKYMTDGMLLREILS------E-PNLESYSVLMVDEAHE-RTLSTDILFGLLKDLIKFRS----------------- 274 (755)
Q Consensus 220 ~~~I~v~T~g~Ll~~l~~------~-~~l~~~~~vIiDEaHe-r~~~~d~~~~~l~~~~~~~~----------------- 274 (755)
.++|++++|=-|...+.. + ..|+.+.++|||.||- -|.+-+.+..+++.+-..+.
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 579999999666655542 1 1589999999999991 12333444555544433221
Q ss_pred ----CcEEEEeccCCCHHH---HHhhhCCC-CE----------EEecCccccceEEEecCCccch-------HHHHHHHH
Q 048746 275 ----DLKLLISSATLDAEK---FSDYFGSA-PI----------FKIPGRRYPVEIHYTKAPEADY-------IDAAIVTV 329 (755)
Q Consensus 275 ----~~~~il~SAT~~~~~---l~~~~~~~-~~----------~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~~~ 329 (755)
-.|+|++|+...++. +..+..+. .. -.+..-..++.+.|...+..+. .+--...+
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 269999999987652 33322221 11 1111223456666654332221 11112223
Q ss_pred HHHHh-hCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcc-
Q 048746 330 LQIHV-TQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIA- 407 (755)
Q Consensus 330 ~~~~~-~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~- 407 (755)
+.... ....+.+|||+|+.-+--.+...|.+ .++..+.+|--.++.+-.++-..|..|+.+||+-|-=+
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~---------~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~H 361 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKK---------ENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFH 361 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHh---------cCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHh
Confidence 33333 55568999999999999999999985 35778888877788887788888999999999999533
Q ss_pred -cccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-------CCEEEEeccCccc
Q 048746 408 -ETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-------PGKCFRLYTLHNY 473 (755)
Q Consensus 408 -~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-------~G~~~~l~~~~~~ 473 (755)
=+=..|.+|+.||-||+ |..+.=|...++-.+... ...|..||++-+.
T Consensus 362 FfrRy~irGi~~viFY~~------------------P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~ 417 (442)
T PF06862_consen 362 FFRRYRIRGIRHVIFYGP------------------PENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDA 417 (442)
T ss_pred hhhhceecCCcEEEEECC------------------CCChhHHHHHHhhhcccccccccccCceEEEEecHhHH
Confidence 24567899999999999 766655555544333322 4789999998654
No 159
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.44 E-value=2.9e-06 Score=102.79 Aligned_cols=131 Identities=21% Similarity=0.107 Sum_probs=82.7
Q ss_pred CeEEEEccCCCchh-c--cHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEee-eee--ccccCCCC
Q 048746 147 QVLVIVGETGSGKT-T--QIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGY-SIR--FEDCTSEK 220 (755)
Q Consensus 147 ~~vii~apTGsGKT-~--~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~-~~~--~~~~~~~~ 220 (755)
+.-+|.--|||||| | .+...+.+. ...+.|++++-|+.|-.|+...+... +........- +.. .+......
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~-~~~~~~~~~~~s~~~Lk~~l~~~~ 350 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSF-GKVAFNDPKAESTSELKELLEDGK 350 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHH-HHhhhhcccccCHHHHHHHHhcCC
Confidence 45889999999999 3 233334443 45569999999999999999988773 2211110000 000 00011124
Q ss_pred ceEEEeCcHHHHHHHhCCC--CCCC-CCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 221 TILKYMTDGMLLREILSEP--NLES-YSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 221 ~~I~v~T~g~Ll~~l~~~~--~l~~-~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
..|+++|-..+-....... .+.+ ==+||+|||| |+......-.+ ....++...++||.|+
T Consensus 351 ~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~~~~~~----~~~~~~a~~~gFTGTP 413 (962)
T COG0610 351 GKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGELAKLL----KKALKKAIFIGFTGTP 413 (962)
T ss_pred CcEEEEEecccchhhhcccccccCCCcEEEEEechh-hccccHHHHHH----HHHhccceEEEeeCCc
Confidence 5899999988877765541 1222 2368999999 88776543332 2334568899999999
No 160
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.39 E-value=2e-05 Score=83.98 Aligned_cols=86 Identities=12% Similarity=0.093 Sum_probs=66.4
Q ss_pred CceEEEeccCCCCHHHHHHHhCCCCCCC-cE-EEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHH
Q 048746 370 AELIICPIYANLPTELQAKIFEPTPEGA-RK-VVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKA 447 (755)
Q Consensus 370 ~~~~v~~lh~~l~~~~r~~i~~~f~~g~-~~-vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~ 447 (755)
.++.++.+-|+|++..|...++.|.+.. ++ .|++-.+.+..+|+-...+|+..|. |.+.+
T Consensus 661 aGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP------------------WWNpa 722 (791)
T KOG1002|consen 661 AGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP------------------WWNPA 722 (791)
T ss_pred cCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc------------------cccHH
Confidence 4688999999999999999999998754 34 4778888888999999999997666 55544
Q ss_pred hHH---hhhcccCCCCCCEEEEeccCccc
Q 048746 448 SAM---QRAGRSGRTGPGKCFRLYTLHNY 473 (755)
Q Consensus 448 ~~~---QR~GRaGR~g~G~~~~l~~~~~~ 473 (755)
--. -|+-|.|...|-++++|+-+...
T Consensus 723 Ve~Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 723 VEWQAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred HHhhhhhhHHhhcCccceeEEEeehhccH
Confidence 433 45555666668889998877654
No 161
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.29 E-value=1.3e-07 Score=108.77 Aligned_cols=225 Identities=16% Similarity=0.215 Sum_probs=135.1
Q ss_pred hHHHHHHHHHH-HcCCeEEEEccCCCchhccHHHHHHHh-cccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEee-
Q 048746 133 YPYRDELLQAV-NEYQVLVIVGETGSGKTTQIPQYLHEA-GYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGY- 209 (755)
Q Consensus 133 ~~~Q~~~l~~i-~~~~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~- 209 (755)
.+.|.+++..+ ..+.++++-+|||||||..+-..+... ...++.+++++.|-.+|+..-..+..+.+-.+ |..++-
T Consensus 929 n~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~ 1007 (1230)
T KOG0952|consen 929 NPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIEL 1007 (1230)
T ss_pred CCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccC-CceeEec
Confidence 34666666553 345678999999999995555444332 22345699999999999999888887765444 433331
Q ss_pred --eeeccccCCCCceEEEeCcHHHHHHHh---CCCCCCCCCceEeecccccCCccc-hHHHHHHHH----HhcCCCcEEE
Q 048746 210 --SIRFEDCTSEKTILKYMTDGMLLREIL---SEPNLESYSVLMVDEAHERTLSTD-ILFGLLKDL----IKFRSDLKLL 279 (755)
Q Consensus 210 --~~~~~~~~~~~~~I~v~T~g~Ll~~l~---~~~~l~~~~~vIiDEaHer~~~~d-~~~~~l~~~----~~~~~~~~~i 279 (755)
.+.-+-..-..+.++++||...-.... +...+.+++.+|+||.|.-+-+-. .+..+.... ....+.++++
T Consensus 1008 tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~ 1087 (1230)
T KOG0952|consen 1008 TGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYL 1087 (1230)
T ss_pred cCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhh
Confidence 111111223467899999977655443 334678899999999992221111 111111110 1123456777
Q ss_pred EeccCC-CHHHHHhhhCCCCEEEe--cCccccceEEEecCCccchHHHHH---H-HHHHHHhhCCCCCEEEEcCCHHHHH
Q 048746 280 ISSATL-DAEKFSDYFGSAPIFKI--PGRRYPVEIHYTKAPEADYIDAAI---V-TVLQIHVTQSPGDILVFLTGQEEIE 352 (755)
Q Consensus 280 l~SAT~-~~~~l~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~iLVF~~~~~~~~ 352 (755)
++|--+ ++.++++|++..+.+.. .-++.|.+.++...|..-+..... . ....+....+..++|||+.++....
T Consensus 1088 glsta~~na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtr 1167 (1230)
T KOG0952|consen 1088 GLSTALANANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTR 1167 (1230)
T ss_pred hHhhhhhccHHHHHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEEeecccccc
Confidence 777555 88999999987666322 345667777776666522222111 1 1122334456689999999887655
Q ss_pred HHHHHH
Q 048746 353 TADEIL 358 (755)
Q Consensus 353 ~l~~~L 358 (755)
..+.-|
T Consensus 1168 lta~~l 1173 (1230)
T KOG0952|consen 1168 LTALDL 1173 (1230)
T ss_pred cchHhH
Confidence 444433
No 162
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.27 E-value=9e-06 Score=91.38 Aligned_cols=113 Identities=16% Similarity=0.220 Sum_probs=89.9
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCC--cEEEEeCCcccccCcCCC
Q 048746 338 PGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGA--RKVVLATNIAETSLTIDG 415 (755)
Q Consensus 338 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~--~~vlvaT~i~~~Gidip~ 415 (755)
+.+||||-.=....+-+...|... ++..+.+.|+.+-..|+.+++.|...+ .-.|++|-+.+-|||+-.
T Consensus 777 G~RVLiFSQFTqmLDILE~~L~~l---------~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~ 847 (941)
T KOG0389|consen 777 GDRVLIFSQFTQMLDILEVVLDTL---------GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTC 847 (941)
T ss_pred CCEEEEeeHHHHHHHHHHHHHHhc---------CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccc
Confidence 468999976555555555555543 378888999999999999999996554 345899999999999999
Q ss_pred eeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCcccc
Q 048746 416 IKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYH 474 (755)
Q Consensus 416 v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~ 474 (755)
.++||-+|. .|| |.+--++.-|+-|.|-..|=.+|+|+++...+
T Consensus 848 An~VIihD~----dFN-----------P~dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 848 ANTVIIHDI----DFN-----------PYDDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred cceEEEeec----CCC-----------CcccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 999997776 334 66667778888888888899999999987654
No 163
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.27 E-value=1.9e-05 Score=91.26 Aligned_cols=125 Identities=22% Similarity=0.221 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEE
Q 048746 323 DAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVL 402 (755)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlv 402 (755)
.+.+..+...|. .+.|+||-..+.+..+.+.+.|.+.+-. ..+..+..| ..+-..+-..-.. --|-|
T Consensus 416 ~Aiv~~I~~~~~--~gqPvLvgT~sie~SE~ls~~L~~~~i~-----h~VLNAk~h----~~EA~Iia~AG~~--gaVTi 482 (822)
T COG0653 416 KAIVEDIKERHE--KGQPVLVGTVSIEKSELLSKLLRKAGIP-----HNVLNAKNH----AREAEIIAQAGQP--GAVTI 482 (822)
T ss_pred HHHHHHHHHHHh--cCCCEEEcCcceecchhHHHHHHhcCCC-----ceeeccccH----HHHHHHHhhcCCC--Ccccc
Confidence 344444444443 3789999999999999999999875411 012223334 2332333332222 34779
Q ss_pred eCCcccccCcCCCeeE---EEeCCCcccccccCCCCccccccc-ccCHHhHHhhhcccCCCC-CCEEEEeccCc
Q 048746 403 ATNIAETSLTIDGIKY---VIDPGFSKVKSYNPRTGMESLLVH-PISKASAMQRAGRSGRTG-PGKCFRLYTLH 471 (755)
Q Consensus 403 aT~i~~~Gidip~v~~---VId~g~~k~~~~~~~~~~~~l~~~-p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~ 471 (755)
|||.|+||-||.--.. |...| |+..+.+. .-|..-=.|-.||+||.| ||..--+.+-+
T Consensus 483 ATNMAGRGTDIkLg~~~~~V~~lG-----------GL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSle 545 (822)
T COG0653 483 ATNMAGRGTDIKLGGNPEFVMELG-----------GLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 545 (822)
T ss_pred ccccccCCcccccCCCHHHHHHhC-----------CcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhH
Confidence 9999999999953221 22221 12222222 334444458999999999 68765555433
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.24 E-value=4e-06 Score=89.01 Aligned_cols=131 Identities=19% Similarity=0.127 Sum_probs=71.5
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH--hcccCC--CccccCccHHHHHHHHHHHHHHHhCC-ccccEEeeeeec-----c
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE--AGYTKQ--GKVGCTQPRRVAAMSVAARVSQEMGV-KLGHEVGYSIRF-----E 214 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~--~~~~~~--~~ilv~~P~r~la~q~a~~~~~~~~~-~~g~~vg~~~~~-----~ 214 (755)
..+..|++-++|+|||.++..++.. ...... ..+||++|. .+..+....+.+.... .. ..+-+.-.. .
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~-~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSL-RVIIYDGDSERRRLS 101 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS--EEEESSSCHHHHTT
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccccc-ccccccccccccccc
Confidence 4578999999999999555444431 111111 259999999 7778888888886632 22 122111111 1
Q ss_pred ccCCCCceEEEeCcHHHH--------HHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 215 DCTSEKTILKYMTDGMLL--------REILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 215 ~~~~~~~~I~v~T~g~Ll--------~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
........++++|...+. ..+.. .++++||+||+| +.-+.+. ...+.+.... ....+++|||+
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH-~~k~~~s--~~~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAH-RLKNKDS--KRYKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGG-GGTTTTS--HHHHHHHCCC-ECEEEEE-SS-
T ss_pred ccccccceeeecccccccccccccccccccc----ccceeEEEeccc-ccccccc--cccccccccc-cceEEeecccc
Confidence 223356789999999988 12211 348999999999 3322221 1222233333 56778899998
No 165
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.16 E-value=1.9e-06 Score=85.41 Aligned_cols=123 Identities=27% Similarity=0.308 Sum_probs=71.4
Q ss_pred ChHHHHHHHHHHHcC--CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEee
Q 048746 132 IYPYRDELLQAVNEY--QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGY 209 (755)
Q Consensus 132 l~~~Q~~~l~~i~~~--~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~ 209 (755)
+++-|.+++..+..+ +.+++.|+.||||||.+-.+.... ...+.+|+++.||..++..+.+.. +...
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~-~~~g~~v~~~apT~~Aa~~L~~~~----~~~a------ 70 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL-EAAGKRVIGLAPTNKAAKELREKT----GIEA------ 70 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH-HHTT--EEEEESSHHHHHHHHHHH----TS-E------
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH-HhCCCeEEEECCcHHHHHHHHHhh----Ccch------
Confidence 567899999998543 478899999999998765543222 223568999999999888866552 2111
Q ss_pred eeeccccCCCCceEEEeCcHHHHHHHhC-----CCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccC
Q 048746 210 SIRFEDCTSEKTILKYMTDGMLLREILS-----EPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSAT 284 (755)
Q Consensus 210 ~~~~~~~~~~~~~I~v~T~g~Ll~~l~~-----~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT 284 (755)
.|-..++..... .+.+.+.++||||||- +++...+..++..+.. .+.|+|++.=+
T Consensus 71 ----------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEas--mv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 71 ----------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEAS--MVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp ----------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGG--G-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred ----------------hhHHHHHhcCCcccccccccCCcccEEEEeccc--ccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 111111100000 0115667899999998 7776665555554322 35777777644
Q ss_pred C
Q 048746 285 L 285 (755)
Q Consensus 285 ~ 285 (755)
-
T Consensus 131 ~ 131 (196)
T PF13604_consen 131 N 131 (196)
T ss_dssp T
T ss_pred c
Confidence 3
No 166
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.04 E-value=9.8e-06 Score=80.09 Aligned_cols=125 Identities=26% Similarity=0.357 Sum_probs=79.2
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcccCCC--ccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEE
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYTKQG--KVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILK 224 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~--~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~ 224 (755)
++++++||||+||||.+..+....... +. .++.+-..|.-|.++.+.+++.+|.++.. ... .
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~-----~~~-----~----- 65 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFYV-----ART-----E----- 65 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE-----SST-----T-----
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccch-----hhc-----c-----
Confidence 468999999999998888776655433 33 34455577899999988999988865311 000 0
Q ss_pred EeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-cCCCcEEEEeccCCCHHH
Q 048746 225 YMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-FRSDLKLLISSATLDAEK 289 (755)
Q Consensus 225 v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-~~~~~~~il~SAT~~~~~ 289 (755)
..|..+++........+++++|+||-+- |+........-++.+.. ..+...++.+|||...+.
T Consensus 66 -~~~~~~~~~~l~~~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 66 -SDPAEIAREALEKFRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED 129 (196)
T ss_dssp -SCHHHHHHHHHHHHHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH
T ss_pred -hhhHHHHHHHHHHHhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHH
Confidence 0132333222111123568999999998 77665554454555444 457778899999995443
No 167
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.96 E-value=0.00017 Score=80.42 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=67.1
Q ss_pred ceEEEeccCCCCHHHHHHHhCCCC---CCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHH
Q 048746 371 ELIICPIYANLPTELQAKIFEPTP---EGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKA 447 (755)
Q Consensus 371 ~~~v~~lh~~l~~~~r~~i~~~f~---~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~ 447 (755)
++....+||.....+|..+++.|. .|.+-.|++-...+.|+|+-+-+|+|-.|+ .|| |.=-.
T Consensus 770 g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDl----HWN-----------PaLEq 834 (901)
T KOG4439|consen 770 GHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDL----HWN-----------PALEQ 834 (901)
T ss_pred CeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEec----ccC-----------HHHHH
Confidence 467788999999999999998883 335556788888999999999999998887 333 33345
Q ss_pred hHHhhhcccCCCCCCEEEEeccCccc
Q 048746 448 SAMQRAGRSGRTGPGKCFRLYTLHNY 473 (755)
Q Consensus 448 ~~~QR~GRaGR~g~G~~~~l~~~~~~ 473 (755)
++.-|+-|.|-..+-..||+......
T Consensus 835 QAcDRIYR~GQkK~V~IhR~~~~gTv 860 (901)
T KOG4439|consen 835 QACDRIYRMGQKKDVFIHRLMCKGTV 860 (901)
T ss_pred HHHHHHHHhcccCceEEEEEEecCcH
Confidence 55666777776667778888876654
No 168
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.95 E-value=2.9e-06 Score=78.23 Aligned_cols=119 Identities=23% Similarity=0.360 Sum_probs=61.9
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHhccc-----CCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCC
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEAGYT-----KQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTS 218 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~-----~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~ 218 (755)
.+++.+++.||+|+|||+++-.++...... ....+.+..|...-...++..+...++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 356789999999999999888887654221 12234455555555567777777777654322
Q ss_pred CCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccC
Q 048746 219 EKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSAT 284 (755)
Q Consensus 219 ~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT 284 (755)
-.+...+.+.+...-.-....+|||||+|. ... .-.+..++.+.. ..++++|+++-.
T Consensus 69 ------~~~~~~l~~~~~~~l~~~~~~~lviDe~~~-l~~-~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDALDRRRVVLLVIDEADH-LFS-DEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp ------TS-HHHHHHHHHHHHHHCTEEEEEEETTHH-HHT-HHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred ------cCCHHHHHHHHHHHHHhcCCeEEEEeChHh-cCC-HHHHHHHHHHHh-CCCCeEEEEECh
Confidence 122333333321111111126899999993 213 333344444433 556766665543
No 169
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.95 E-value=5.4e-05 Score=82.26 Aligned_cols=126 Identities=22% Similarity=0.281 Sum_probs=78.7
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhccc---CCCc--cccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCC
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYT---KQGK--VGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEK 220 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~---~~~~--ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~ 220 (755)
.++++++||||+||||.+..+....... .+.+ ++-+=+.|..+..+.+.+++.+|.++. +
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~------------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--A------------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--e-------------
Confidence 4689999999999998877665443221 2233 344457788888777777776665431 1
Q ss_pred ceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-cCCC-cEEEEeccCCCHHHHHhhh
Q 048746 221 TILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-FRSD-LKLLISSATLDAEKFSDYF 294 (755)
Q Consensus 221 ~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-~~~~-~~~il~SAT~~~~~l~~~~ 294 (755)
..++..+...+. .+.++++||||++. |+......+.-++.++. ..++ -.++++|||.....+.+.|
T Consensus 239 ----~~~~~~l~~~L~---~~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 239 ----IESFKDLKEEIT---QSKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred ----eCcHHHHHHHHH---HhCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 113344444332 24689999999998 77543333333444433 3333 5789999999766665554
No 170
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.95 E-value=0.0012 Score=78.72 Aligned_cols=122 Identities=20% Similarity=0.192 Sum_probs=80.8
Q ss_pred CCChHHHHHHHHHHHc-CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEe
Q 048746 130 LPIYPYRDELLQAVNE-YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVG 208 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~-~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg 208 (755)
..+++-|.+++..+.. ++.++|+|++|+||||++-.++... ...+.+|++++||--+|..+. +..|...
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~-~~~g~~V~~~ApTg~Aa~~L~----~~~g~~a----- 420 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAW-EAAGYRVIGAALSGKAAEGLQ----AESGIES----- 420 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHH-HhCCCeEEEEeCcHHHHHHHH----hccCCce-----
Confidence 5578999999998776 5899999999999998877654322 123557999999987765554 2222210
Q ss_pred eeeeccccCCCCceEEEeCcHHHHHHHh-CCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 209 YSIRFEDCTSEKTILKYMTDGMLLREIL-SEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 209 ~~~~~~~~~~~~~~I~v~T~g~Ll~~l~-~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
.|-..++..+. ....+...++||||||- +++...+..+++... ....++|++.
T Consensus 421 -----------------~Ti~~~~~~~~~~~~~~~~~~llIvDEas--Mv~~~~~~~Ll~~~~--~~~~kliLVG 474 (744)
T TIGR02768 421 -----------------RTLASLEYAWANGRDLLSDKDVLVIDEAG--MVGSRQMARVLKEAE--EAGAKVVLVG 474 (744)
T ss_pred -----------------eeHHHHHhhhccCcccCCCCcEEEEECcc--cCCHHHHHHHHHHHH--hcCCEEEEEC
Confidence 12222221111 22346788999999998 888777666655443 2467787776
No 171
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.93 E-value=4.8e-05 Score=81.27 Aligned_cols=128 Identities=27% Similarity=0.300 Sum_probs=91.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcc-cCCC--ccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCc
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGY-TKQG--KVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKT 221 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~-~~~~--~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~ 221 (755)
+++++.++||||.||||.+..+...... .... .++-+=..|+-|..+.+..++.+|.++
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------ 263 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------ 263 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce------------------
Confidence 3899999999999999888776655431 2222 333445679988888889999888764
Q ss_pred eEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcC-CCcEEEEeccCCCHHHHHhhhC
Q 048746 222 ILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFR-SDLKLLISSATLDAEKFSDYFG 295 (755)
Q Consensus 222 ~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~-~~~~~il~SAT~~~~~l~~~~~ 295 (755)
.++-+|.-|...+ ..+.++++|.||=+- |+........-++.+.... +.-..+.+|||...+.+.+.+.
T Consensus 264 -~vv~~~~el~~ai---~~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 264 -EVVYSPKELAEAI---EALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred -EEecCHHHHHHHH---HHhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 2344555555444 257788999999997 8877777777677766643 4556788999997766666543
No 172
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=6.2e-05 Score=80.54 Aligned_cols=128 Identities=17% Similarity=0.289 Sum_probs=75.7
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcccCCCcccc--CccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEE
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGC--TQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILK 224 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv--~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~ 224 (755)
+.+.++||||+||||.+..+..... ..+.++.+ .-|.|+.+.+..+..++..|.++ +.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~-~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv-------------------~v 301 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-------------------IA 301 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE-------------------Ee
Confidence 6889999999999988877655432 22333433 33667666655555555444322 11
Q ss_pred EeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHH-hcCCCcEEEEeccCCCHH---HHHhhhC
Q 048746 225 YMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLI-KFRSDLKLLISSATLDAE---KFSDYFG 295 (755)
Q Consensus 225 v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~-~~~~~~~~il~SAT~~~~---~l~~~~~ 295 (755)
..+|..+.+.+..-..-.++++|+||-+= |+....-.+.-+..+. ...++..++.+|||.... .+.+.|.
T Consensus 302 ~~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~ 375 (436)
T PRK11889 302 VRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 375 (436)
T ss_pred cCCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhc
Confidence 23566666555322222368999999996 6655444333334443 455666678899998443 3444454
No 173
>PF13245 AAA_19: Part of AAA domain
Probab=97.88 E-value=1.4e-05 Score=65.74 Aligned_cols=54 Identities=28% Similarity=0.354 Sum_probs=40.4
Q ss_pred HHHcCCeEEEEccCCCchhccHHHHHHHhcc---cCCCccccCccHHHHHHHHHHHH
Q 048746 142 AVNEYQVLVIVGETGSGKTTQIPQYLHEAGY---TKQGKVGCTQPRRVAAMSVAARV 195 (755)
Q Consensus 142 ~i~~~~~vii~apTGsGKT~~ip~~l~~~~~---~~~~~ilv~~P~r~la~q~a~~~ 195 (755)
++..++.++|.||+|||||+.+...+..... ..+.+|+++.|++.++.++.+++
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4455677888999999999665554443321 11558999999999999999888
No 174
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.88 E-value=6.6e-05 Score=86.50 Aligned_cols=138 Identities=18% Similarity=0.221 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHh---cccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEee
Q 048746 133 YPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEA---GYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGY 209 (755)
Q Consensus 133 ~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~---~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~ 209 (755)
.++|..++.....++.++|.|++|+||||.+-.++... ...+..+|+++.||.-+|..+.+.+..... .++.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~-~~~~---- 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALR-QLPL---- 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh-cccc----
Confidence 47899999998899999999999999998876655432 111234788999999998888776654321 1100
Q ss_pred eeeccccCCCCceEEEeCcHHHHHHHhC-------CCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 210 SIRFEDCTSEKTILKYMTDGMLLREILS-------EPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 210 ~~~~~~~~~~~~~I~v~T~g~Ll~~l~~-------~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
.............|-.+|+..... ......+++|||||+- |++...+..+++. .+++.|+|++.
T Consensus 229 ----~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS--Mvd~~lm~~ll~a---l~~~~rlIlvG 299 (615)
T PRK10875 229 ----TDEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS--MVDLPMMARLIDA---LPPHARVIFLG 299 (615)
T ss_pred ----chhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh--cccHHHHHHHHHh---cccCCEEEEec
Confidence 000000000112222333221111 1123356899999998 8887666555543 56778888876
Q ss_pred cC
Q 048746 283 AT 284 (755)
Q Consensus 283 AT 284 (755)
=.
T Consensus 300 D~ 301 (615)
T PRK10875 300 DR 301 (615)
T ss_pred ch
Confidence 43
No 175
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=9e-05 Score=80.02 Aligned_cols=318 Identities=18% Similarity=0.151 Sum_probs=177.7
Q ss_pred HhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh-----ccHHHHHHHh-----------c---c------c-------
Q 048746 126 ERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT-----TQIPQYLHEA-----------G---Y------T------- 173 (755)
Q Consensus 126 ~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT-----~~ip~~l~~~-----------~---~------~------- 173 (755)
.+...|+++.|.+++..+.+.++++. ||+|-|. .+..+.++.+ . . .
T Consensus 211 ~K~s~pltalQ~~L~~~m~~YrDl~y--~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frD 288 (698)
T KOG2340|consen 211 QKKSEPLTALQKELFKIMFNYRDLLY--PTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRD 288 (698)
T ss_pred ccccCcchHHHHHHHHHHHhhhhhcc--ccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhh
Confidence 46789999999999999999999865 5555444 1111111110 0 0 0
Q ss_pred ---CCCccccCccHHHHHHHHHHHHHHH-hCCccccE-Ee--------eeee-----------------ccccCC-----
Q 048746 174 ---KQGKVGCTQPRRVAAMSVAARVSQE-MGVKLGHE-VG--------YSIR-----------------FEDCTS----- 218 (755)
Q Consensus 174 ---~~~~ilv~~P~r~la~q~a~~~~~~-~~~~~g~~-vg--------~~~~-----------------~~~~~~----- 218 (755)
..++|||++|+|+.|..+...+... .|..-|.. |. |+.. |...+.
T Consensus 289 QG~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~Fri 368 (698)
T KOG2340|consen 289 QGFTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRI 368 (698)
T ss_pred cCCCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhh
Confidence 1348999999999999999888776 34333211 10 1100 000000
Q ss_pred ---------------CCceEEEeCcHHHHHHHhC--C-----CCCCCCCceEeecccccCCccchHHHHHHHHHh---cC
Q 048746 219 ---------------EKTILKYMTDGMLLREILS--E-----PNLESYSVLMVDEAHERTLSTDILFGLLKDLIK---FR 273 (755)
Q Consensus 219 ---------------~~~~I~v~T~g~Ll~~l~~--~-----~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~---~~ 273 (755)
...+|+||+|=-|--.+-+ + ..|+.+.++|||-|| .+.+.-+..++.++-. .+
T Consensus 369 Gl~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~--~~l~QNwEhl~~ifdHLn~~P 446 (698)
T KOG2340|consen 369 GLAFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQAD--IMLMQNWEHLLHIFDHLNLQP 446 (698)
T ss_pred hHHHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHH--HHHHhhHHHHHHHHHHhhcCc
Confidence 1478999999554333321 1 158889999999999 2222222222322222 22
Q ss_pred CC---------------------cEEEEeccCCCHH---HHHhhhCC----CCEEEe------cCccccceEEEecCCcc
Q 048746 274 SD---------------------LKLLISSATLDAE---KFSDYFGS----APIFKI------PGRRYPVEIHYTKAPEA 319 (755)
Q Consensus 274 ~~---------------------~~~il~SAT~~~~---~l~~~~~~----~~~~~~------~~~~~~v~~~~~~~~~~ 319 (755)
.+ .|++++|+-.++. .|..+..+ ...-.+ ..-..|+.+.|......
T Consensus 447 ~k~h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~ 526 (698)
T KOG2340|consen 447 SKQHDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVK 526 (698)
T ss_pred ccccCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheecc
Confidence 11 4667777665332 22222221 000011 11133444443321111
Q ss_pred ---chHHHHH----HHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEecc--CCCCHHHHHHHh
Q 048746 320 ---DYIDAAI----VTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIY--ANLPTELQAKIF 390 (755)
Q Consensus 320 ---~~~~~~~----~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh--~~l~~~~r~~i~ 390 (755)
...+... ..++--........+||+.|+.-+--.+...+++.. +....+| +..+.-.| +-
T Consensus 527 si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~---------i~F~~i~EYssk~~vsR--AR 595 (698)
T KOG2340|consen 527 SIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEE---------ISFVMINEYSSKSKVSR--AR 595 (698)
T ss_pred CcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhh---------cchHHHhhhhhHhhhhH--HH
Confidence 1111111 122211222234678999999999988888888743 3333343 33333333 33
Q ss_pred CCCCCCCcEEEEeCCcc--cccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-----CE
Q 048746 391 EPTPEGARKVVLATNIA--ETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-----GK 463 (755)
Q Consensus 391 ~~f~~g~~~vlvaT~i~--~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-----G~ 463 (755)
+.|-.|...|++-|.-+ =+--+|.+|+-||-|+. ...|.-.++++.+.+|+.-.|. -.
T Consensus 596 ~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqp---------------P~~P~FYsEiinm~~k~~~~gn~d~d~~t 660 (698)
T KOG2340|consen 596 ELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQP---------------PNNPHFYSEIINMSDKTTSQGNTDLDIFT 660 (698)
T ss_pred HHHHhcCceEEEEehhhhhhhhheecceeeEEEecC---------------CCCcHHHHHHHhhhhhhhccCCccccceE
Confidence 44778999999999654 36788999999998887 1225557788899988865552 46
Q ss_pred EEEeccCccc
Q 048746 464 CFRLYTLHNY 473 (755)
Q Consensus 464 ~~~l~~~~~~ 473 (755)
|-.||++-+-
T Consensus 661 ~~ilytKyD~ 670 (698)
T KOG2340|consen 661 VRILYTKYDR 670 (698)
T ss_pred EEEEeechhh
Confidence 8888987543
No 176
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.87 E-value=0.00022 Score=84.30 Aligned_cols=66 Identities=14% Similarity=0.035 Sum_probs=50.3
Q ss_pred CceEEEeCcHHHHHHHhCC-CCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCC
Q 048746 220 KTILKYMTDGMLLREILSE-PNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLD 286 (755)
Q Consensus 220 ~~~I~v~T~g~Ll~~l~~~-~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~ 286 (755)
...|+++||.+|..-++.+ ..+..++.||||||| |...+-...-+++......+..-+.+|||.+.
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ah-r~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRAD-RIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecc-cccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 3568999999887665544 588999999999999 77665544445555555667778999999993
No 177
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.86 E-value=5.3e-05 Score=87.07 Aligned_cols=135 Identities=22% Similarity=0.251 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhc--ccC--CCccccCccHHHHHHHHHHHHHHHhCCccccEEee
Q 048746 134 PYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAG--YTK--QGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGY 209 (755)
Q Consensus 134 ~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~--~~~--~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~ 209 (755)
+.|..++.....++.++|+|++|+||||.+-.++.... ... ..+|++++||--+|..+.+.+..... .+...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~-~l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK-NLAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc-ccccc---
Confidence 78999999999999999999999999987766543221 111 24799999999988887776654321 11100
Q ss_pred eeeccccCCCCceEEEeCcHHHHHHHhC-------CCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 210 SIRFEDCTSEKTILKYMTDGMLLREILS-------EPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 210 ~~~~~~~~~~~~~I~v~T~g~Ll~~l~~-------~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
........+...|-.+|+..... ......+++||||||= |++...+..+++. .++..|+|++.
T Consensus 224 -----~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~a---l~~~~rlIlvG 293 (586)
T TIGR01447 224 -----EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLKA---LPPNTKLILLG 293 (586)
T ss_pred -----hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc--cCCHHHHHHHHHh---cCCCCEEEEEC
Confidence 00000011123333333322111 1123368999999997 8887665554443 45677877765
No 178
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.83 E-value=0.0014 Score=79.16 Aligned_cols=125 Identities=22% Similarity=0.193 Sum_probs=80.9
Q ss_pred CCCChHHHHHHHHHHHc-CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEE
Q 048746 129 TLPIYPYRDELLQAVNE-YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEV 207 (755)
Q Consensus 129 ~lPl~~~Q~~~l~~i~~-~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~v 207 (755)
.+.+++-|.+++..+.. ++.++++|+.|+||||.+-.+. +.....+.+|+.++||-.+|..+. +..|..
T Consensus 344 g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~-~~~e~~G~~V~~~ApTGkAA~~L~----e~tGi~----- 413 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAR-EAWEAAGYEVRGAALSGIAAENLE----GGSGIA----- 413 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHH-HHHHHcCCeEEEecCcHHHHHHHh----hccCcc-----
Confidence 35689999999998777 4578999999999998765432 221223557999999987775543 211211
Q ss_pred eeeeeccccCCCCceEEEeCcHHHHHHH-hCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccC
Q 048746 208 GYSIRFEDCTSEKTILKYMTDGMLLREI-LSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSAT 284 (755)
Q Consensus 208 g~~~~~~~~~~~~~~I~v~T~g~Ll~~l-~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT 284 (755)
-.|-..|+..+ .....+...++|||||+- |+++..+..+++... ....++|++.=+
T Consensus 414 -----------------a~TI~sll~~~~~~~~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a~--~~garvVLVGD~ 470 (988)
T PRK13889 414 -----------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAG--MVGTRQLERVLSHAA--DAGAKVVLVGDP 470 (988)
T ss_pred -----------------hhhHHHHHhhhcccccccccCcEEEEECcc--cCCHHHHHHHHHhhh--hCCCEEEEECCH
Confidence 01222222211 122346678999999998 888877666655433 356788887744
No 179
>PRK10536 hypothetical protein; Provisional
Probab=97.82 E-value=4e-05 Score=77.65 Aligned_cols=59 Identities=25% Similarity=0.245 Sum_probs=44.7
Q ss_pred cCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccC-CCccccCccHHH
Q 048746 128 KTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTK-QGKVGCTQPRRV 186 (755)
Q Consensus 128 ~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~ilv~~P~r~ 186 (755)
...|.+..|...+.++.++..+++.||+|||||+++-.+..+..... -.+++++-|...
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 45789999999999999999999999999999987776655432221 236676666643
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.82 E-value=6.2e-05 Score=74.22 Aligned_cols=57 Identities=21% Similarity=0.169 Sum_probs=37.2
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhccc-CCCccccCccHHH
Q 048746 130 LPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYT-KQGKVGCTQPRRV 186 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r~ 186 (755)
.|.+..|..+++++.+.+.+++.||.|||||+++....++.... .-.+++++-|..+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVE 60 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCC
Confidence 58899999999999999999999999999997766554443222 2247888877754
No 181
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.81 E-value=8.5e-05 Score=87.89 Aligned_cols=125 Identities=22% Similarity=0.228 Sum_probs=81.6
Q ss_pred cCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCC--CccccCccHHHHHHHHHHHHHHHhCCcccc
Q 048746 128 KTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQ--GKVGCTQPRRVAAMSVAARVSQEMGVKLGH 205 (755)
Q Consensus 128 ~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~--~~ilv~~P~r~la~q~a~~~~~~~~~~~g~ 205 (755)
....+++.|.+++..+..++.+++.|++|+||||++-.++..... .+ ..+++++||--+|..+. +..|...
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~-~~~~~~v~l~ApTg~AA~~L~----e~~g~~a-- 392 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEE-LGGLLPVGLAAPTGRAAKRLG----EVTGLTA-- 392 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCceEEEEeCchHHHHHHH----HhcCCcc--
Confidence 346679999999999999999999999999999887655443211 22 46888999988876443 3333211
Q ss_pred EEeeeeeccccCCCCceEEEeCcHHHHHHHhC------CCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEE
Q 048746 206 EVGYSIRFEDCTSEKTILKYMTDGMLLREILS------EPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLL 279 (755)
Q Consensus 206 ~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~------~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~i 279 (755)
.|-..++..... .......++||||||+ |++...+..+++ ..+++.|+|
T Consensus 393 --------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaS--Mvd~~~~~~Ll~---~~~~~~rli 447 (720)
T TIGR01448 393 --------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESS--MMDTWLALSLLA---ALPDHARLL 447 (720)
T ss_pred --------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccc--cCCHHHHHHHHH---hCCCCCEEE
Confidence 111122211000 0112457899999999 888776655544 345678888
Q ss_pred EeccC
Q 048746 280 ISSAT 284 (755)
Q Consensus 280 l~SAT 284 (755)
++.=+
T Consensus 448 lvGD~ 452 (720)
T TIGR01448 448 LVGDT 452 (720)
T ss_pred EECcc
Confidence 87644
No 182
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.0001 Score=79.51 Aligned_cols=123 Identities=19% Similarity=0.196 Sum_probs=77.9
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHhcccCC-Ccccc-C-ccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCC
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQ-GKVGC-T-QPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEK 220 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~-~~ilv-~-~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~ 220 (755)
..+.+++++||||+||||.+..+........+ .+|.+ . -+.|..+.+..+.+++.+|.++
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~----------------- 197 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPV----------------- 197 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCce-----------------
Confidence 45789999999999999888877655422222 23332 2 2446667777777777666433
Q ss_pred ceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-cCCCcEEEEeccCCCHHH
Q 048746 221 TILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-FRSDLKLLISSATLDAEK 289 (755)
Q Consensus 221 ~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-~~~~~~~il~SAT~~~~~ 289 (755)
..+.+++.+...+. .+.+.++|+||++- +....+.+...+..+.. ..+.-.++++|||...+.
T Consensus 198 --~~~~~~~~l~~~l~---~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 198 --HAVKDGGDLQLALA---ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred --EecCCcccHHHHHH---HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 11223333333331 35678999999997 66655666666666544 234567899999995543
No 183
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.75 E-value=5.8e-05 Score=82.18 Aligned_cols=94 Identities=20% Similarity=0.269 Sum_probs=62.2
Q ss_pred CeEEEEccCCCchhccHHHHHHHh-cccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEEE
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEA-GYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKY 225 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~v 225 (755)
+.++|.|.+|||||.++..++... ....+..++++++...|...+.+.+..... .......+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-----------------~~~~~~~~ 64 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN-----------------PKLKKSDF 64 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcc-----------------cchhhhhh
Confidence 478999999999997776665554 123455888999999998888877766430 01112223
Q ss_pred eCcHHHHHHHh-CCCCCCCCCceEeecccccCCc
Q 048746 226 MTDGMLLREIL-SEPNLESYSVLMVDEAHERTLS 258 (755)
Q Consensus 226 ~T~g~Ll~~l~-~~~~l~~~~~vIiDEaHer~~~ 258 (755)
..+..+...+. .......+++||||||| |...
T Consensus 65 ~~~~~~i~~~~~~~~~~~~~DviivDEAq-rl~~ 97 (352)
T PF09848_consen 65 RKPTSFINNYSESDKEKNKYDVIIVDEAQ-RLRT 97 (352)
T ss_pred hhhHHHHhhcccccccCCcCCEEEEehhH-hhhh
Confidence 33444433332 33467789999999999 6554
No 184
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.74 E-value=6.5e-05 Score=82.83 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=51.9
Q ss_pred CCChHHHHHHHHHHHcC-CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHH
Q 048746 130 LPIYPYRDELLQAVNEY-QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVS 196 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~-~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~ 196 (755)
.-+.+.|.+++....+. ...++.||+|+|||+.+-.++... ...+.+|+|..||.+++..+.+|+.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~ql-vk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQL-VKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHH-HHcCCeEEEEcCchHHHHHHHHHhc
Confidence 34678899999987776 678899999999996666555544 2345799999999999998888654
No 185
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.65 E-value=4.8e-05 Score=77.41 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=53.0
Q ss_pred ChHHHHHHHHHHHcCCe-EEEEccCCCchhccHHHHHHHh-------cccCCCccccCccHHHHHHHHHHHHHH
Q 048746 132 IYPYRDELLQAVNEYQV-LVIVGETGSGKTTQIPQYLHEA-------GYTKQGKVGCTQPRRVAAMSVAARVSQ 197 (755)
Q Consensus 132 l~~~Q~~~l~~i~~~~~-vii~apTGsGKT~~ip~~l~~~-------~~~~~~~ilv~~P~r~la~q~a~~~~~ 197 (755)
+.+.|.+++..+..... .+|.||+|||||+.+..++... ....+.+++++.|+..++..+.+++.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 57889999999888887 9999999999998777666655 134566999999999999999999877
No 186
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.64 E-value=0.00033 Score=77.58 Aligned_cols=125 Identities=26% Similarity=0.304 Sum_probs=75.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhc-ccCCCccc--cCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCc
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAG-YTKQGKVG--CTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKT 221 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~il--v~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~ 221 (755)
.+++++++||||+||||.+..+..... ...+.+|. -+-|.|..+.+.....++.++.++-
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~----------------- 282 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE----------------- 282 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE-----------------
Confidence 367899999999999988776655442 22223333 3446677676666666665554321
Q ss_pred eEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-c-CCCcEEEEeccCCCHHHHHh
Q 048746 222 ILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-F-RSDLKLLISSATLDAEKFSD 292 (755)
Q Consensus 222 ~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-~-~~~~~~il~SAT~~~~~l~~ 292 (755)
...++.-+...+. .+.++++||||.+- |..........+..+.. . .+...++++|||.....+.+
T Consensus 283 --~~~~~~~l~~~l~---~~~~~DlVlIDt~G-~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~ 349 (424)
T PRK05703 283 --VVYDPKELAKALE---QLRDCDVILIDTAG-RSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKD 349 (424)
T ss_pred --ccCCHHhHHHHHH---HhCCCCEEEEeCCC-CCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHH
Confidence 1123444444443 24478999999996 55443333344444444 2 34456888999996554443
No 187
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.59 E-value=0.00016 Score=79.04 Aligned_cols=121 Identities=22% Similarity=0.340 Sum_probs=79.2
Q ss_pred ChHHHHHHHHHH------HcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHH--HHHHHHHhCCcc
Q 048746 132 IYPYRDELLQAV------NEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSV--AARVSQEMGVKL 203 (755)
Q Consensus 132 l~~~Q~~~l~~i------~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~--a~~~~~~~~~~~ 203 (755)
|++-|+.+++.+ .++..+.+.|+-|+|||+++-.+.... ...+..+++++||-.+|..+ ...+-..++.++
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~-~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~ 80 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL-RSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPI 80 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh-ccccceEEEecchHHHHHhccCCcchHHhcCccc
Confidence 467788888777 778899999999999998887766543 22355899999999999877 444555555443
Q ss_pred ccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcC
Q 048746 204 GHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFR 273 (755)
Q Consensus 204 g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~ 273 (755)
+..- .....+.....+ ...+.+.++|||||+= ++..+.+..+-+.+...+
T Consensus 81 ~~~~------------~~~~~~~~~~~~------~~~l~~~~~lIiDEis--m~~~~~l~~i~~~lr~i~ 130 (364)
T PF05970_consen 81 NNNE------------KSQCKISKNSRL------RERLRKADVLIIDEIS--MVSADMLDAIDRRLRDIR 130 (364)
T ss_pred cccc------------cccccccccchh------hhhhhhheeeeccccc--chhHHHHHHHHHhhhhhh
Confidence 2110 000001111111 1247788999999997 777777766655554433
No 188
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.58 E-value=0.0006 Score=70.38 Aligned_cols=138 Identities=17% Similarity=0.119 Sum_probs=87.2
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEe-eeeeccccCCCCceEE
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVG-YSIRFEDCTSEKTILK 224 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg-~~~~~~~~~~~~~~I~ 224 (755)
..-.++--.||.||--++..++++.......+.+++..+-.|-....+.+.. .|........ ..........-..-|+
T Consensus 62 R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~D-IG~~~i~v~~l~~~~~~~~~~~~~Gvl 140 (303)
T PF13872_consen 62 RAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRD-IGADNIPVHPLNKFKYGDIIRLKEGVL 140 (303)
T ss_pred CcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHH-hCCCcccceechhhccCcCCCCCCCcc
Confidence 4556777789999998888888887555445799999999999998888876 3332111111 1111111122345689
Q ss_pred EeCcHHHHHHHhCCC----CC--------CC-CCceEeecccccCCccch-------HHHHHHHHHhcCCCcEEEEeccC
Q 048746 225 YMTDGMLLREILSEP----NL--------ES-YSVLMVDEAHERTLSTDI-------LFGLLKDLIKFRSDLKLLISSAT 284 (755)
Q Consensus 225 v~T~g~Ll~~l~~~~----~l--------~~-~~~vIiDEaHer~~~~d~-------~~~~l~~~~~~~~~~~~il~SAT 284 (755)
++|...|...-.... .+ .+ =.+||+|||| ..-+... .-.....+...-|+.+++.+|||
T Consensus 141 F~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH-~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SAT 219 (303)
T PF13872_consen 141 FSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECH-KAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASAT 219 (303)
T ss_pred chhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccch-hcCCCCccCccccHHHHHHHHHHHhCCCCcEEEeccc
Confidence 999988877643211 11 11 2589999999 3333221 11233445556688999999999
Q ss_pred C
Q 048746 285 L 285 (755)
Q Consensus 285 ~ 285 (755)
-
T Consensus 220 g 220 (303)
T PF13872_consen 220 G 220 (303)
T ss_pred c
Confidence 8
No 189
>PRK14974 cell division protein FtsY; Provisional
Probab=97.57 E-value=0.00028 Score=75.35 Aligned_cols=122 Identities=22% Similarity=0.255 Sum_probs=70.3
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCc--cHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceE
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ--PRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTIL 223 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~--P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I 223 (755)
...++++|++|+||||.+..+.... ...+.+++++. +.|..+....+..+..+|.++.. + ....
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l-~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~-------~~g~---- 205 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYL-KKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--H-------KYGA---- 205 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--c-------cCCC----
Confidence 3589999999999998877665433 12233454432 45666665566666766654321 0 0000
Q ss_pred EEeCcH-HHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHH-hcCCCcEEEEeccCCC
Q 048746 224 KYMTDG-MLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLI-KFRSDLKLLISSATLD 286 (755)
Q Consensus 224 ~v~T~g-~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~-~~~~~~~~il~SAT~~ 286 (755)
.|. .+.+.+.. ....++++|+||.+. |.....-++.-++.+. ...|+..+++++||..
T Consensus 206 ---dp~~v~~~ai~~-~~~~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 206 ---DPAAVAYDAIEH-AKARGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred ---CHHHHHHHHHHH-HHhCCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccc
Confidence 111 11121111 122467899999998 6654333333344443 3568888999999883
No 190
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.54 E-value=0.0006 Score=63.34 Aligned_cols=46 Identities=22% Similarity=0.179 Sum_probs=29.1
Q ss_pred HHHHHHHc--CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccH
Q 048746 138 ELLQAVNE--YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPR 184 (755)
Q Consensus 138 ~~l~~i~~--~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~ 184 (755)
++...+.. ++.+++.||+|+|||+++-.++.... ..+..++++...
T Consensus 9 ~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~-~~~~~v~~~~~~ 56 (151)
T cd00009 9 ALREALELPPPKNLLLYGPPGTGKTTLARAIANELF-RPGAPFLYLNAS 56 (151)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh-cCCCCeEEEehh
Confidence 34444444 78899999999999987666655442 223345554433
No 191
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.52 E-value=0.0039 Score=75.88 Aligned_cols=125 Identities=19% Similarity=0.211 Sum_probs=83.1
Q ss_pred CCCChHHHHHHHHHHH-cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEE
Q 048746 129 TLPIYPYRDELLQAVN-EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEV 207 (755)
Q Consensus 129 ~lPl~~~Q~~~l~~i~-~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~v 207 (755)
...+++-|.+++..+. .++.++|+|+.|+||||.+-.+.... ...+.+|+.+.||--+|..+. +..|...
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~-e~~G~~V~g~ApTgkAA~~L~----e~~Gi~a---- 449 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAW-EAAGYRVVGGALAGKAAEGLE----KEAGIQS---- 449 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHH-HHcCCeEEEEcCcHHHHHHHH----HhhCCCe----
Confidence 3568999999999874 47899999999999998776554321 223558899999987765543 3333221
Q ss_pred eeeeeccccCCCCceEEEeCcHHH-HHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccC
Q 048746 208 GYSIRFEDCTSEKTILKYMTDGML-LREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSAT 284 (755)
Q Consensus 208 g~~~~~~~~~~~~~~I~v~T~g~L-l~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT 284 (755)
.|-..+ ++.-.....+..-++|||||+. |+++..+..+++.+. ..+.++|++.=+
T Consensus 450 ------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~--~~garvVLVGD~ 505 (1102)
T PRK13826 450 ------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAVT--RAGAKLVLVGDP 505 (1102)
T ss_pred ------------------eeHHHHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHHH--hcCCEEEEECCH
Confidence 111222 1111122346677899999998 888887777766653 246788887744
No 192
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.00057 Score=74.26 Aligned_cols=126 Identities=21% Similarity=0.197 Sum_probs=76.8
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhcccCCCcc--ccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceE
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKV--GCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTIL 223 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~i--lv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I 223 (755)
+..++++||||+||||++..+........+.+| +-.-+.|..+..+.++.++.+|.++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~------------------- 283 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY------------------- 283 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCee-------------------
Confidence 467889999999999999888764423333333 33457788888888788776654321
Q ss_pred EEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhc----CCCcEEEEeccCCCHH---HHHhhhC
Q 048746 224 KYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKF----RSDLKLLISSATLDAE---KFSDYFG 295 (755)
Q Consensus 224 ~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~----~~~~~~il~SAT~~~~---~l~~~~~ 295 (755)
.+.....+...+. -.++++||||=+- |+....-...-+..+... .+.-.++++|||...+ .+.+.|.
T Consensus 284 ~~~~~~~l~~~l~----~~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~ 357 (432)
T PRK12724 284 PVKDIKKFKETLA----RDGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYE 357 (432)
T ss_pred ehHHHHHHHHHHH----hCCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhc
Confidence 0011233344332 2578999999986 664443333334444332 2345788999999544 4444454
No 193
>PRK06526 transposase; Provisional
Probab=97.50 E-value=0.0002 Score=73.71 Aligned_cols=38 Identities=24% Similarity=0.192 Sum_probs=26.7
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccC
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT 181 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 181 (755)
+..+++++++||+|+|||+++-.+..+.. ..+.+++++
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~-~~g~~v~f~ 132 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRAC-QAGHRVLFA 132 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHH-HCCCchhhh
Confidence 55788999999999999977666554432 234455554
No 194
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.00044 Score=73.91 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=78.6
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHhcccCCCcc--ccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCc
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKV--GCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKT 221 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~i--lv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~ 221 (755)
..++.++++||||+||||.+..+..... ..+.+| +-+-|.|..|..+.+..++.++.++
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~-~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv------------------ 264 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLL-KQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL------------------ 264 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE------------------
Confidence 4578999999999999988776655431 223333 3344677766665555555444321
Q ss_pred eEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-cCCCcEEEEeccCCCHHHHHhhh
Q 048746 222 ILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-FRSDLKLLISSATLDAEKFSDYF 294 (755)
Q Consensus 222 ~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-~~~~~~~il~SAT~~~~~l~~~~ 294 (755)
....+|.-+.+.+..-....++++|+||=+= |+....-.+.-++.+.. ..++.-++.+|||.....+.+.+
T Consensus 265 -~~~~dp~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 265 -IVATSPAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred -EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 1123455555444322233578999999996 66544444444444443 45666678899988665555543
No 195
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.47 E-value=0.00044 Score=82.06 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=37.3
Q ss_pred CcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC
Q 048746 397 ARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG 460 (755)
Q Consensus 397 ~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g 460 (755)
..+.|++-+++..|-|-|+|-.+.-..- ..|...-.|-+||.-|..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~------------------~~s~~~~~q~~gr~lr~~ 546 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRS------------------SGSETSKLQEVGRGLRLP 546 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEecc------------------CCchHHHHHHhccceecc
Confidence 6899999999999999998866552221 567778899999999975
No 196
>PRK08181 transposase; Validated
Probab=97.42 E-value=0.001 Score=68.93 Aligned_cols=117 Identities=14% Similarity=0.154 Sum_probs=63.6
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCce
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTI 222 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~ 222 (755)
+..++++++.||+|+|||.++-.+..... ..+..++++ +...|..++......
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~-~~g~~v~f~-~~~~L~~~l~~a~~~------------------------- 155 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALI-ENGWRVLFT-RTTDLVQKLQVARRE------------------------- 155 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHH-HcCCceeee-eHHHHHHHHHHHHhC-------------------------
Confidence 45788999999999999977666654432 223355544 444555544321000
Q ss_pred EEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCCHHHHHhhhCC
Q 048746 223 LKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLDAEKFSDYFGS 296 (755)
Q Consensus 223 I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~~~l~~~~~~ 296 (755)
.+...+++ .+.++++|||||++. ....+.....+-.+...+.+.+-+++|.-.++..+...|++
T Consensus 156 ---~~~~~~l~------~l~~~dLLIIDDlg~-~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~~D 219 (269)
T PRK08181 156 ---LQLESAIA------KLDKFDLLILDDLAY-VTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFPD 219 (269)
T ss_pred ---CcHHHHHH------HHhcCCEEEEecccc-ccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHhcCC
Confidence 01122222 245789999999983 22233333333333332222234555556666667766643
No 197
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.42 E-value=0.008 Score=78.48 Aligned_cols=247 Identities=15% Similarity=0.179 Sum_probs=136.5
Q ss_pred CCCChHHHHHHHHHHHcC--CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccE
Q 048746 129 TLPIYPYRDELLQAVNEY--QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHE 206 (755)
Q Consensus 129 ~lPl~~~Q~~~l~~i~~~--~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~ 206 (755)
.+++++-|.+++..+..+ +..+|.|+.|+||||.+-.++... ...+.+|++++||--.|..+.+. .|......
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~-~~~G~~V~~lAPTgrAA~~L~e~----~g~~A~Ti 501 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLA-SEQGYEIQIITAGSLSAQELRQK----IPRLASTF 501 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHH----hcchhhhH
Confidence 356789999999987764 899999999999998776554332 22356899999998877665543 22211000
Q ss_pred EeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC-
Q 048746 207 VGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL- 285 (755)
Q Consensus 207 vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~- 285 (755)
..+... .... ....|...++ ..+..+..-++||||||- +++...+..+++... ..+.|+|++.=+-
T Consensus 502 ~~~l~~---l~~~---~~~~tv~~fl---~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~--~~garvVlvGD~~Q 568 (1960)
T TIGR02760 502 ITWVKN---LFND---DQDHTVQGLL---DKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAE--QHNSKLILLNDSAQ 568 (1960)
T ss_pred HHHHHh---hccc---ccchhHHHhh---cccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHh--hcCCEEEEEcChhh
Confidence 000000 0000 0111222222 223345678999999998 888877777766543 3467888877543
Q ss_pred --C--H-HHHHhhh-CCCCEEEecCc-cccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHH
Q 048746 286 --D--A-EKFSDYF-GSAPIFKIPGR-RYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEIL 358 (755)
Q Consensus 286 --~--~-~~l~~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L 358 (755)
. + ..|..+. .+.+...+... ...-.+........+.........+.+.. ....++|+.++.++...+...+
T Consensus 569 L~sV~aG~~f~~L~~~gv~t~~l~~i~rq~~~v~i~~~~~~~r~~~ia~~y~~L~~--~r~~tliv~~t~~dr~~Ln~~i 646 (1960)
T TIGR02760 569 RQGMSAGSAIDLLKEGGVTTYAWVDTKQQKASVEISEAVDKLRVDYIASAWLDLTP--DRQNSQVLATTHREQQDLTQII 646 (1960)
T ss_pred cCccccchHHHHHHHCCCcEEEeecccccCcceeeeccCchHHHHHHHHHHHhccc--ccCceEEEcCCcHHHHHHHHHH
Confidence 1 1 2333222 12344443221 11111222222222223333334443322 3456999999999999999999
Q ss_pred HHhhcccCCCC-CceEEEecc-CCCCHHHHHHHhCCCCCC
Q 048746 359 KHRTRGLGSKI-AELIICPIY-ANLPTELQAKIFEPTPEG 396 (755)
Q Consensus 359 ~~~~~~~~~~~-~~~~v~~lh-~~l~~~~r~~i~~~f~~g 396 (755)
+..+...|.-. .+..+..+. ..|+..++... ..|+.|
T Consensus 647 R~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 647 RNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred HHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 88764333211 234444443 45777776643 445444
No 198
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.36 E-value=0.00018 Score=83.23 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=80.6
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCC---CcEEEEeCCcccccCcCC
Q 048746 338 PGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEG---ARKVVLATNIAETSLTID 414 (755)
Q Consensus 338 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g---~~~vlvaT~i~~~Gidip 414 (755)
++.||.|+.-..-...+..+|.- .++...-+.|....++|-..++.|..- -...|++|-..+.|+|+.
T Consensus 726 gHRVLlF~qMTrlmdimEdyL~~---------~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQ 796 (1157)
T KOG0386|consen 726 GHRVLLFSQMTRLMDILEDYLQI---------REYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQ 796 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHHHhh---------hhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchh
Confidence 57788888766655555555554 246777889999999998877777543 356799999999999999
Q ss_pred CeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC---CCEEEEeccCcccc
Q 048746 415 GIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG---PGKCFRLYTLHNYH 474 (755)
Q Consensus 415 ~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g---~G~~~~l~~~~~~~ 474 (755)
..+.||-++- -..+-...|+--||-|.| .-.++++.+-..++
T Consensus 797 tadtviifds------------------dwnp~~d~qaqdrahrigq~~evRv~rl~tv~sve 841 (1157)
T KOG0386|consen 797 TADTVIIFDS------------------DWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVE 841 (1157)
T ss_pred hcceEEEecC------------------CCCchhHHHHHHHHHHhhchhheeeeeeehhhHHH
Confidence 9999886665 445566677777777777 46678887765543
No 199
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.36 E-value=0.00033 Score=73.77 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=48.8
Q ss_pred cCCCChHHHHHHHH----HHHcCCeEEEEccCCCchh--ccHHHHHHHhcccC---CCccccCccHHHHHHHHHHHHHH
Q 048746 128 KTLPIYPYRDELLQ----AVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTK---QGKVGCTQPRRVAAMSVAARVSQ 197 (755)
Q Consensus 128 ~~lPl~~~Q~~~l~----~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~---~~~ilv~~P~r~la~q~a~~~~~ 197 (755)
+..+.++.|.+.+. .+.+++++++.||||+||| +++|.+.+...... +.++++..+|..+..|....+.+
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 34444999999444 5677899999999999999 45554333221111 23899999999988877666554
No 200
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.36 E-value=0.00033 Score=73.77 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=48.8
Q ss_pred cCCCChHHHHHHHH----HHHcCCeEEEEccCCCchh--ccHHHHHHHhcccC---CCccccCccHHHHHHHHHHHHHH
Q 048746 128 KTLPIYPYRDELLQ----AVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTK---QGKVGCTQPRRVAAMSVAARVSQ 197 (755)
Q Consensus 128 ~~lPl~~~Q~~~l~----~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~---~~~ilv~~P~r~la~q~a~~~~~ 197 (755)
+..+.++.|.+.+. .+.+++++++.||||+||| +++|.+.+...... +.++++..+|..+..|....+.+
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 34444999999444 5677899999999999999 45554333221111 23899999999988877666554
No 201
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.31 E-value=0.00036 Score=71.73 Aligned_cols=123 Identities=16% Similarity=0.049 Sum_probs=70.1
Q ss_pred HhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCcccc
Q 048746 126 ERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGH 205 (755)
Q Consensus 126 ~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~ 205 (755)
..+..| ++.|--..-++..|+ |+...||=|||..+.....-..+ .+..|=|+.....||..=++.+...+. .+|.
T Consensus 73 ~~g~~p-~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL-~G~~V~vvT~NdyLA~RD~~~~~~~y~-~LGl 147 (266)
T PF07517_consen 73 TLGLRP-YDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL-QGKGVHVVTSNDYLAKRDAEEMRPFYE-FLGL 147 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT-TSS-EEEEESSHHHHHHHHHHHHHHHH-HTT-
T ss_pred HcCCcc-cHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH-hcCCcEEEeccHHHhhccHHHHHHHHH-Hhhh
Confidence 334444 777766665666665 89999999999444433322222 244566777777888866666555332 3344
Q ss_pred EEeeeeecccc----CCCCceEEEeCcHHHHH-HHhC----CC---CCCCCCceEeeccc
Q 048746 206 EVGYSIRFEDC----TSEKTILKYMTDGMLLR-EILS----EP---NLESYSVLMVDEAH 253 (755)
Q Consensus 206 ~vg~~~~~~~~----~~~~~~I~v~T~g~Ll~-~l~~----~~---~l~~~~~vIiDEaH 253 (755)
.+|........ ..-.++|+|+|...+.. .|.. .. ....+.++||||||
T Consensus 148 sv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvD 207 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVD 207 (266)
T ss_dssp -EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHH
T ss_pred ccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccc
Confidence 44433322211 11246899999976643 3322 11 25788999999999
No 202
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.26 E-value=0.0026 Score=70.95 Aligned_cols=126 Identities=22% Similarity=0.279 Sum_probs=70.9
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccC-CCcccc--CccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCC
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTK-QGKVGC--TQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSE 219 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~ilv--~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~ 219 (755)
+..++.++++||||+||||.+-.+........ +.+|.+ .-+.|..+.++.......++..+ -
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v----~----------- 411 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV----H----------- 411 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCcee----E-----------
Confidence 45688999999999999988776655432222 223433 33556655554444433322211 0
Q ss_pred CceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCCHHHHH
Q 048746 220 KTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLDAEKFS 291 (755)
Q Consensus 220 ~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~~~l~ 291 (755)
...+++.+...+. .+.++++||||.+- ++.....+...+..+........+++++++.....+.
T Consensus 412 ----~a~d~~~L~~aL~---~l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 412 ----EADSAESLLDLLE---RLRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred ----ecCcHHHHHHHHH---HhccCCEEEecCCC-cchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH
Confidence 0113344444442 24578999999997 5543333333334444444456788899988544433
No 203
>PRK04296 thymidine kinase; Provisional
Probab=97.19 E-value=0.00041 Score=68.39 Aligned_cols=109 Identities=20% Similarity=0.216 Sum_probs=58.9
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccH---HHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCce
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPR---RVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTI 222 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~---r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~ 222 (755)
+...++.||+|+||||.+-.++..... .+.+++++-|. |..... +...+|..+ ..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~-~g~~v~i~k~~~d~~~~~~~----i~~~lg~~~-----------------~~ 59 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE-RGMKVLVFKPAIDDRYGEGK----VVSRIGLSR-----------------EA 59 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH-cCCeEEEEeccccccccCCc----EecCCCCcc-----------------cc
Confidence 457899999999999988888766532 34567766552 221111 111111111 00
Q ss_pred EEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 223 LKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 223 I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
+.+.....+++.+.. .-.++++|||||+| .+..+.+..+++.+.. .+..+|+..
T Consensus 60 ~~~~~~~~~~~~~~~--~~~~~dvviIDEaq--~l~~~~v~~l~~~l~~--~g~~vi~tg 113 (190)
T PRK04296 60 IPVSSDTDIFELIEE--EGEKIDCVLIDEAQ--FLDKEQVVQLAEVLDD--LGIPVICYG 113 (190)
T ss_pred eEeCChHHHHHHHHh--hCCCCCEEEEEccc--cCCHHHHHHHHHHHHH--cCCeEEEEe
Confidence 123344555555544 33578999999998 3444433444444322 344444443
No 204
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.19 E-value=0.00045 Score=76.60 Aligned_cols=72 Identities=19% Similarity=0.307 Sum_probs=59.6
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccc
Q 048746 132 IYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLG 204 (755)
Q Consensus 132 l~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g 204 (755)
+...|..++.+++++...||+||+|+|||.....+++.......+.|+|.+|...++.|+|+.+.+ .|.++-
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~-tgLKVv 482 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHK-TGLKVV 482 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHh-cCceEe
Confidence 678899999999999999999999999995555555544344567999999999999999999977 565543
No 205
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.0021 Score=75.04 Aligned_cols=124 Identities=19% Similarity=0.191 Sum_probs=80.4
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCC-Cccc-cCc-cHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCc
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQ-GKVG-CTQ-PRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKT 221 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~-~~il-v~~-P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~ 221 (755)
.++++.++||||+||||.+..+........+ .+|. +.. +.|+.+.++.+.+++.+|.++-
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~----------------- 246 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH----------------- 246 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc-----------------
Confidence 3678999999999999888777644322223 2333 333 5577777666677776664321
Q ss_pred eEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-cCCCcEEEEeccCCCHHHHH
Q 048746 222 ILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-FRSDLKLLISSATLDAEKFS 291 (755)
Q Consensus 222 ~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-~~~~~~~il~SAT~~~~~l~ 291 (755)
.+.+|..+...+. .+.++++|+||=+= |+....-+...+..+.. ..+.-.++++|||...+.+.
T Consensus 247 --~~~~~~~l~~al~---~~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 247 --AVKDAADLRFALA---ALGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred --ccCCHHHHHHHHH---HhcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 1225666655553 35678999999997 77655555555555543 45677899999999655443
No 206
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.17 E-value=0.0034 Score=74.79 Aligned_cols=181 Identities=13% Similarity=0.128 Sum_probs=104.9
Q ss_pred cEEEEeccCC-CHHHHHhhhCCCC-EEEecCcccc-----------------ceEEEecCCccchHHHHHHHHHHHHhhC
Q 048746 276 LKLLISSATL-DAEKFSDYFGSAP-IFKIPGRRYP-----------------VEIHYTKAPEADYIDAAIVTVLQIHVTQ 336 (755)
Q Consensus 276 ~~~il~SAT~-~~~~l~~~~~~~~-~~~~~~~~~~-----------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (755)
..+|++|||+ +.+.|.+.++-.. .....+..+| +...|......++.......+..+....
T Consensus 442 ~svil~SgTL~p~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~~ 521 (705)
T TIGR00604 442 RSVILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKII 521 (705)
T ss_pred CEEEEecccCCcHHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhcC
Confidence 3689999999 6677877776421 1111111111 1122222223445666666666665554
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhc--ccCCCCCceEEEeccCCCCHHHHHHHhCCCCC----CCcEEEEeC--Cccc
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTR--GLGSKIAELIICPIYANLPTELQAKIFEPTPE----GARKVVLAT--NIAE 408 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~----g~~~vlvaT--~i~~ 408 (755)
+|.+|||+||....+.+.+.+.+.+. .+.. ...+.+-+ .+. .++..+++.|+. |.-.||+|+ ..+.
T Consensus 522 -pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~-~k~i~~E~-~~~---~~~~~~l~~f~~~~~~~~gavL~av~gGk~s 595 (705)
T TIGR00604 522 -PDGIVVFFPSYSYLENIVSTWKEMGILENIEK-KKLIFVET-KDA---QETSDALERYKQAVSEGRGAVLLSVAGGKVS 595 (705)
T ss_pred -CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhc-CCCEEEeC-CCc---chHHHHHHHHHHHHhcCCceEEEEecCCccc
Confidence 68899999999999999988875321 0000 01122212 111 456777777743 456799999 8899
Q ss_pred ccCcCCC--eeEEEeCCCcccccccCC--------------CCcccccccccCHHhHHhhhcccCCCCCCE
Q 048746 409 TSLTIDG--IKYVIDPGFSKVKSYNPR--------------TGMESLLVHPISKASAMQRAGRSGRTGPGK 463 (755)
Q Consensus 409 ~Gidip~--v~~VId~g~~k~~~~~~~--------------~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~ 463 (755)
.|||+++ .+.||-.|+.-....|+. .|... -..........|-+||+=|.....
T Consensus 596 EGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~a~~~v~QaiGR~IR~~~D~ 665 (705)
T TIGR00604 596 EGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQD-FYEFDAMRAVNQAIGRVIRHKDDY 665 (705)
T ss_pred CccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHH-HHHHHHHHHHHHHhCccccCcCce
Confidence 9999987 678887776432211211 11100 001233456789999999998633
No 207
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.15 E-value=0.00057 Score=62.91 Aligned_cols=40 Identities=35% Similarity=0.414 Sum_probs=27.1
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRV 186 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~ 186 (755)
++.+++.||+|||||+++-.++....... ..++++.+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEc
Confidence 57899999999999988887766543221 23555544433
No 208
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.0027 Score=69.76 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=76.8
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHhccc---CCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCC
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEAGYT---KQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEK 220 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~---~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~ 220 (755)
..++.+.++||||+||||.+-.+....... ....++..-..|.-+.++...+++.+|.++.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~---------------- 252 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR---------------- 252 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee----------------
Confidence 457889999999999998887665432111 1123344445577777777777777665431
Q ss_pred ceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhc-CCCcEEEEeccCCCHHHHHh
Q 048746 221 TILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKF-RSDLKLLISSATLDAEKFSD 292 (755)
Q Consensus 221 ~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~-~~~~~~il~SAT~~~~~l~~ 292 (755)
.+.++.-+...+. .+.+.++++||.+= |......+...++.+... .+.-.++++|||...+.+.+
T Consensus 253 ---~v~~~~dl~~al~---~l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 253 ---SIKDIADLQLMLH---ELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred ---cCCCHHHHHHHHH---HhcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH
Confidence 0112222222221 36778999999984 665544455555555443 34456788999985554443
No 209
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.05 E-value=0.0006 Score=72.79 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHH---HHHhcccCCCccccCccHHHHHHHHHHHHHHHhC
Q 048746 132 IYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQY---LHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMG 200 (755)
Q Consensus 132 l~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~---l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~ 200 (755)
+++-|.+++.. .++.++|.|..|||||+.+..- ++.....+..+|+|+.+|+.+|.++..|+...++
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 46788888887 6788999999999999665532 2233212345899999999999999999988654
No 210
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.03 E-value=0.00092 Score=78.05 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=55.0
Q ss_pred CCChHHHHHHHHHHHcC-CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHH
Q 048746 130 LPIYPYRDELLQAVNEY-QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQ 197 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~-~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~ 197 (755)
-++++.|.+++..+..+ ..++|.||+|+|||+.+..++... ...+.+|+++.||..++.++.+++.+
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~-~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQL-VKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHH-HHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 35789999999987765 789999999999997776665543 22355899999999999999999876
No 211
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.02 E-value=0.0034 Score=62.59 Aligned_cols=127 Identities=21% Similarity=0.232 Sum_probs=81.1
Q ss_pred HHHhcCCCChHHHHHHHHHHHc---CCeEEEEccCCCchhccHHHHHHHhcccCCC-ccccCccHHHHHHHHHHHHHHHh
Q 048746 124 QEERKTLPIYPYRDELLQAVNE---YQVLVIVGETGSGKTTQIPQYLHEAGYTKQG-KVGCTQPRRVAAMSVAARVSQEM 199 (755)
Q Consensus 124 ~~~~~~lPl~~~Q~~~l~~i~~---~~~vii~apTGsGKT~~ip~~l~~~~~~~~~-~ilv~~P~r~la~q~a~~~~~~~ 199 (755)
.+....+-|++.|.++...+.+ +++.+...-.|.|||+.|..++... +.++. -+.+++|. +|..|.+..+...+
T Consensus 16 ~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~-LAdg~~LvrviVpk-~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 16 FEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALA-LADGSRLVRVIVPK-ALLEQMRQMLRSRL 93 (229)
T ss_pred HHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHH-HcCCCcEEEEEcCH-HHHHHHHHHHHHHH
Confidence 3445667789999999999765 5789999999999996554443332 22333 44456665 68888888887777
Q ss_pred CCccccEEeeeeeccccCC-----------------CCceEEEeCcHHHHHHHhC--------CC-----------CCCC
Q 048746 200 GVKLGHEVGYSIRFEDCTS-----------------EKTILKYMTDGMLLREILS--------EP-----------NLES 243 (755)
Q Consensus 200 ~~~~g~~vg~~~~~~~~~~-----------------~~~~I~v~T~g~Ll~~l~~--------~~-----------~l~~ 243 (755)
|.-++..+ |...|+.... ...-|+++||+.++..... .. ++.+
T Consensus 94 g~l~~r~i-~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~ 172 (229)
T PF12340_consen 94 GGLLNRRI-YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDE 172 (229)
T ss_pred HHHhCCee-EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 64444332 3444443221 1345889999987764321 11 2344
Q ss_pred CCceEeeccc
Q 048746 244 YSVLMVDEAH 253 (755)
Q Consensus 244 ~~~vIiDEaH 253 (755)
...=|+||+|
T Consensus 173 ~~rdilDEsD 182 (229)
T PF12340_consen 173 HSRDILDESD 182 (229)
T ss_pred cCCeEeECch
Confidence 5556889988
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.97 E-value=0.0059 Score=62.40 Aligned_cols=114 Identities=16% Similarity=0.201 Sum_probs=65.0
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEEEe
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYM 226 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~v~ 226 (755)
..+++.|++|+|||+++-.+...... .+..++++ +...+.. .+...+.. .. .
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~-~g~~v~~i-t~~~l~~----~l~~~~~~----------------~~------~ 151 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL-RGKSVLII-TVADIMS----AMKDTFSN----------------SE------T 151 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEE-EHHHHHH----HHHHHHhh----------------cc------c
Confidence 57999999999999777666554422 23455554 3333332 33221110 00 1
Q ss_pred CcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcC-CCcEEEEeccCCCHHHHHhhhC
Q 048746 227 TDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFR-SDLKLLISSATLDAEKFSDYFG 295 (755)
Q Consensus 227 T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~-~~~~~il~SAT~~~~~l~~~~~ 295 (755)
+...+++. +.++++|||||++. ...+++...++..+...| .+.+-+++|.-++.+.+.+.++
T Consensus 152 ~~~~~l~~------l~~~dlLvIDDig~-~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g 214 (244)
T PRK07952 152 SEEQLLND------LSNVDLLVIDEIGV-QTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLG 214 (244)
T ss_pred cHHHHHHH------hccCCEEEEeCCCC-CCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhC
Confidence 22333333 56889999999993 235666666666555543 2234455555666676766664
No 213
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.95 E-value=0.005 Score=63.80 Aligned_cols=123 Identities=18% Similarity=0.307 Sum_probs=67.5
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccc--cCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCce
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVG--CTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTI 222 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~il--v~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~ 222 (755)
.+..+.++|++|+||||++-.+..... ..+.++. .+-+.|..+.+..+..+..++.++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~-~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~------------------- 133 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV------------------- 133 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHHhhhcCceE-------------------
Confidence 558999999999999987765544431 1222232 233555433333333333232111
Q ss_pred EEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccc-hHHHHHHHHHhcCCCcEEEEeccCCCHH
Q 048746 223 LKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTD-ILFGLLKDLIKFRSDLKLLISSATLDAE 288 (755)
Q Consensus 223 I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d-~~~~~l~~~~~~~~~~~~il~SAT~~~~ 288 (755)
+...++..+.+.+..-....++++||||.+= |+.... .+..+.+.+....++..++.+|||...+
T Consensus 134 ~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 134 IAVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 1112444444433211123468999999996 665433 4444444443455666788899998543
No 214
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.93 E-value=0.0042 Score=73.05 Aligned_cols=116 Identities=17% Similarity=0.249 Sum_probs=93.8
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCc--EEEEeCCcccccCcC
Q 048746 336 QSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGAR--KVVLATNIAETSLTI 413 (755)
Q Consensus 336 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~--~vlvaT~i~~~Gidi 413 (755)
..+.++|||..=.+..+-+..+|..++ +..+-+.|...-++|+..++.|....+ ..|++|--.+.|||+
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLnyHg---------ylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNL 1344 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNYHG---------YLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINL 1344 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhhcc---------eEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccccc
Confidence 346799999988888888888887754 788889999999999999999976543 458999999999999
Q ss_pred CCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCccccc
Q 048746 414 DGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYHK 475 (755)
Q Consensus 414 p~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~~ 475 (755)
-+.+.||-|| ...+ |.--+.+.-|+-|.|+...=..|||+++...++
T Consensus 1345 tgADTVvFYD--------sDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~TIEe 1391 (1958)
T KOG0391|consen 1345 TGADTVVFYD--------SDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERTIEE 1391 (1958)
T ss_pred ccCceEEEec--------CCCC-------chhhhHHHHHHHhhcCccceEEEEeeccchHHH
Confidence 9999999544 3322 566677788888888888899999999876543
No 215
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.89 E-value=0.006 Score=65.02 Aligned_cols=124 Identities=24% Similarity=0.280 Sum_probs=70.8
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccC-c-cHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCce
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT-Q-PRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTI 222 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~-~-P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~ 222 (755)
.++.+.++||+|+||||.+..+..... ..+++|+++ . +.|..+.+.....+...+..+ +. . . ...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~---~~---~-~--~~~--- 179 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPV---IA---Q-K--EGA--- 179 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCeEEEEecCccchhhHHHHHHHHHHcCceE---EE---e-C--CCC---
Confidence 467899999999999988776654432 234455543 2 457666655555555554321 00 0 0 000
Q ss_pred EEEeCcHH-HHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-------cCCCcEEEEeccCCCH
Q 048746 223 LKYMTDGM-LLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-------FRSDLKLLISSATLDA 287 (755)
Q Consensus 223 I~v~T~g~-Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-------~~~~~~~il~SAT~~~ 287 (755)
.|.. ..+.+. .....++++||||=+- |....+.+..-++.+.+ ..++-.++.++||...
T Consensus 180 ----dpa~~v~~~l~-~~~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~ 246 (318)
T PRK10416 180 ----DPASVAFDAIQ-AAKARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246 (318)
T ss_pred ----CHHHHHHHHHH-HHHhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh
Confidence 1111 111111 1124678999999997 76655554444444432 2466678999999844
No 216
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.87 E-value=0.0068 Score=65.56 Aligned_cols=50 Identities=12% Similarity=0.186 Sum_probs=34.3
Q ss_pred HHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 231 LLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 231 Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
+.+.+...+....+.+||||||| .++......+++.+..-+++..+|++|
T Consensus 129 l~~~l~~~~~~g~~rVviIDeAd--~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 129 VGHFLSQTSGDGNWRIVIIDPAD--DMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred HHHHhhhccccCCceEEEEEchh--hcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 44444444556788999999999 556666777777776655556666665
No 217
>PRK08727 hypothetical protein; Validated
Probab=96.86 E-value=0.0037 Score=63.76 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=22.8
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcccCCCccccC
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT 181 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 181 (755)
+.+++.||+|+|||.++-.+.... ...+.+++++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~-~~~~~~~~y~ 75 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA-EQAGRSSAYL 75 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEE
Confidence 459999999999997766555443 2223355554
No 218
>PF05729 NACHT: NACHT domain
Probab=96.86 E-value=0.0049 Score=58.83 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=36.6
Q ss_pred ceEeecccccCCccch-----HHHHHHHHHhc--CCCcEEEEeccCCCHHHHHhhhCCCCEEEec
Q 048746 246 VLMVDEAHERTLSTDI-----LFGLLKDLIKF--RSDLKLLISSATLDAEKFSDYFGSAPIFKIP 303 (755)
Q Consensus 246 ~vIiDEaHer~~~~d~-----~~~~l~~~~~~--~~~~~~il~SAT~~~~~l~~~~~~~~~~~~~ 303 (755)
++|||=+||-...... ....+..+... .++.++++.|.+-....+.+.+.....+.+.
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~ 148 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELE 148 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEEC
Confidence 4888988864443322 44455555544 6789988888777666677777655444443
No 219
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.77 E-value=0.0073 Score=67.47 Aligned_cols=124 Identities=18% Similarity=0.195 Sum_probs=72.8
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCC-cc--ccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCc
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQG-KV--GCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKT 221 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~-~i--lv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~ 221 (755)
.++++.++||||+||||.+-.+........+. +| +-.-+.|..+.+..+.+++.+|..+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~---------------- 318 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA---------------- 318 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec----------------
Confidence 46789999999999998888776543222222 33 333466788888777888877643210
Q ss_pred eEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcC-CCcEEEEeccCCCHHHHH
Q 048746 222 ILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFR-SDLKLLISSATLDAEKFS 291 (755)
Q Consensus 222 ~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~-~~~~~il~SAT~~~~~l~ 291 (755)
..++.-+...+ ..+.++++++||.+= |+.........+..+.... +.-.++.++||.....+.
T Consensus 319 ---~~~~~Dl~~aL---~~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~ 382 (484)
T PRK06995 319 ---VKDAADLRLAL---SELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLN 382 (484)
T ss_pred ---cCCchhHHHHH---HhccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHH
Confidence 00111111111 246677899999985 6544333333333332221 344788999999555443
No 220
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.73 E-value=0.0013 Score=63.49 Aligned_cols=125 Identities=19% Similarity=0.204 Sum_probs=74.6
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCC--cccccCcCC
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATN--IAETSLTID 414 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~--i~~~Gidip 414 (755)
.+|.+|||+||.+..+.+.+.+...... .++.+.. . ...++..+++.|+.+...||+|+. .+..|||+|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----~~~~v~~-q---~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE-----KGIPVFV-Q---GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E------ETSCEEE-S---TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc-----ccceeee-c---CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 3699999999999999999988764311 0122222 2 244667788888889999999998 999999999
Q ss_pred C--eeEEEeCCCcccccccCC-----------CC-cccccccccCHHhHHhhhcccCCCCCCEEEEeccC
Q 048746 415 G--IKYVIDPGFSKVKSYNPR-----------TG-MESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTL 470 (755)
Q Consensus 415 ~--v~~VId~g~~k~~~~~~~-----------~~-~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~ 470 (755)
+ ++.||-.|+.-...-|+. .+ .......|.......|-+||+=|.....+..++-.
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD 148 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLD 148 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEES
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEc
Confidence 7 777887666322111211 00 00111224455667899999999987554444433
No 221
>PF13173 AAA_14: AAA domain
Probab=96.69 E-value=0.0058 Score=56.04 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=22.5
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHh
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+++.+++.||.|+||||++-+++...
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999998887655
No 222
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.68 E-value=0.005 Score=71.30 Aligned_cols=49 Identities=24% Similarity=0.434 Sum_probs=32.8
Q ss_pred HHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 232 LREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 232 l~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
++.+...+.-.+++++||||+| ++.......++|.+..-.++.++|+.+
T Consensus 108 Ie~a~~~P~~gr~KVIIIDEah--~LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 108 LERAVYAPVDARFKVYMIDEVH--MLTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred HHHHHhccccCCceEEEEeChh--hCCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 3333333445678999999999 666666777788766555566666654
No 223
>PRK06893 DNA replication initiation factor; Validated
Probab=96.68 E-value=0.0062 Score=61.98 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=19.7
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+..+++.||+|+|||.++-.+..+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999997776666553
No 224
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.68 E-value=0.0054 Score=63.96 Aligned_cols=125 Identities=22% Similarity=0.315 Sum_probs=70.4
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccC--ccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCce
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT--QPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTI 222 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~ 222 (755)
..+.++++||||+||||.+..+..... ..+.+|+++ =+.|..+.+....+++..+..+ +. .. . ..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~-~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~---~~--~~--~--~~--- 137 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK-KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDV---IK--QK--E--GA--- 137 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEE---Ee--CC--C--CC---
Confidence 346888999999999987776654432 233455443 3567777666666666555321 00 00 0 00
Q ss_pred EEEeCcHH-HHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-cC------CCcEEEEeccCCCHH
Q 048746 223 LKYMTDGM-LLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-FR------SDLKLLISSATLDAE 288 (755)
Q Consensus 223 I~v~T~g~-Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-~~------~~~~~il~SAT~~~~ 288 (755)
-|.. ..+.+.. ....++++||||=+- |......+..-++.+.. .. ++-.++.++||...+
T Consensus 138 ----dp~~~~~~~l~~-~~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~ 205 (272)
T TIGR00064 138 ----DPAAVAFDAIQK-AKARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN 205 (272)
T ss_pred ----CHHHHHHHHHHH-HHHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH
Confidence 1211 1121111 123678999999997 66544344433443332 22 677899999998443
No 225
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.65 E-value=0.022 Score=65.12 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=85.1
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhC---C-----ccccEEe-----ee
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMG---V-----KLGHEVG-----YS 210 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~---~-----~~g~~vg-----~~ 210 (755)
.+.+-.++.+|=|.|||+.+-.++.......+.+|+|++|...-+.++.+++...+. . ..+..+. ..
T Consensus 185 fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg~E~ 264 (752)
T PHA03333 185 YGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGTDEN 264 (752)
T ss_pred HhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCCeeE
Confidence 345778899999999996655443322221356899999999999999888776553 1 1111111 00
Q ss_pred eeccccCC---CCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCCH
Q 048746 211 IRFEDCTS---EKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLDA 287 (755)
Q Consensus 211 ~~~~~~~~---~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~ 287 (755)
+.+..... ....|.+++.+ .+...-.+++++|+|||+ .+..+.+..++-.+.. .+.++|++|.+-+.
T Consensus 265 I~f~~p~gak~G~sti~F~Ars------~~s~RG~~~DLLIVDEAA--fI~~~~l~aIlP~l~~--~~~k~IiISS~~~~ 334 (752)
T PHA03333 265 LEYISDPAAKEGKTTAHFLASS------PNAARGQNPDLVIVDEAA--FVNPGALLSVLPLMAV--KGTKQIHISSPVDA 334 (752)
T ss_pred EEEecCcccccCcceeEEeccc------CCCcCCCCCCEEEEECcc--cCCHHHHHHHHHHHcc--CCCceEEEeCCCCc
Confidence 11111000 11344443322 011122357899999999 6666777666655543 36788899988877
Q ss_pred HHHHhhhCC
Q 048746 288 EKFSDYFGS 296 (755)
Q Consensus 288 ~~l~~~~~~ 296 (755)
+.+..++.+
T Consensus 335 ~s~tS~L~n 343 (752)
T PHA03333 335 DSWISRVGE 343 (752)
T ss_pred chHHHHhhh
Confidence 766665544
No 226
>PRK05642 DNA replication initiation factor; Validated
Probab=96.63 E-value=0.0066 Score=62.00 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=22.6
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcccCCCccccC
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT 181 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 181 (755)
..+++.||+|+|||.++-.+..+. ...+.+++|+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~-~~~~~~v~y~ 79 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF-EQRGEPAVYL 79 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEe
Confidence 568999999999997765554432 1223455554
No 227
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.62 E-value=0.0054 Score=59.70 Aligned_cols=117 Identities=18% Similarity=0.194 Sum_probs=57.5
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCce
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTI 222 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~ 222 (755)
+.+++++++.||||+|||+++-.+..+.. ..+..+++ .+...|...+... .. ..
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~-~~g~~v~f-~~~~~L~~~l~~~----~~-----------------~~--- 97 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAI-RKGYSVLF-ITASDLLDELKQS----RS-----------------DG--- 97 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEE-EEHHHHHHHHHCC----HC-----------------CT---
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhc-cCCcceeE-eecCceecccccc----cc-----------------cc---
Confidence 45678999999999999977766655542 23334555 4555555544310 00 00
Q ss_pred EEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-cCCCcEEEEeccCCCHHHHHhhhCCC
Q 048746 223 LKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-FRSDLKLLISSATLDAEKFSDYFGSA 297 (755)
Q Consensus 223 I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-~~~~~~~il~SAT~~~~~l~~~~~~~ 297 (755)
+...+++. +.+++++||||.- -...++.....+-.++. ......+|+ |.-++.+.+.+.+++.
T Consensus 98 ----~~~~~~~~------l~~~dlLilDDlG-~~~~~~~~~~~l~~ii~~R~~~~~tIi-TSN~~~~~l~~~~~d~ 161 (178)
T PF01695_consen 98 ----SYEELLKR------LKRVDLLILDDLG-YEPLSEWEAELLFEIIDERYERKPTII-TSNLSPSELEEVLGDR 161 (178)
T ss_dssp ----THCHHHHH------HHTSSCEEEETCT-SS---HHHHHCTHHHHHHHHHT-EEEE-EESS-HHHHHT-----
T ss_pred ----chhhhcCc------cccccEecccccc-eeeecccccccchhhhhHhhcccCeEe-eCCCchhhHhhccccc
Confidence 01122332 4578999999997 22223333333333333 222334444 5556888888888753
No 228
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.62 E-value=0.012 Score=62.96 Aligned_cols=115 Identities=20% Similarity=0.178 Sum_probs=62.3
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEE
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILK 224 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~ 224 (755)
.+..+++.||||+|||+++-.+..+. ...+..|+++ +...+...+.... +. ... .
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l-~~~g~~V~y~-t~~~l~~~l~~~~---~~--------------~~~-~----- 236 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKEL-LDRGKSVIYR-TADELIEILREIR---FN--------------NDK-E----- 236 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-HHCCCeEEEE-EHHHHHHHHHHHH---hc--------------cch-h-----
Confidence 45889999999999997766555443 2233355553 4455544443210 00 000 0
Q ss_pred EeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcC-CCcEEEEeccCCCHHHHHhhh
Q 048746 225 YMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFR-SDLKLLISSATLDAEKFSDYF 294 (755)
Q Consensus 225 v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~-~~~~~il~SAT~~~~~l~~~~ 294 (755)
.... ++ .+.++++||||+.+ ....+++....+-.++..+ ..-+-+++|..++++.+.+.+
T Consensus 237 --~~~~-~~------~l~~~DLLIIDDlG-~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~ 297 (329)
T PRK06835 237 --LEEV-YD------LLINCDLLIIDDLG-TEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTY 297 (329)
T ss_pred --HHHH-HH------HhccCCEEEEeccC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 0000 11 35678999999998 4445555555444444432 222335566666666555544
No 229
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.007 Score=67.22 Aligned_cols=44 Identities=30% Similarity=0.391 Sum_probs=29.1
Q ss_pred CCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCC
Q 048746 239 PNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLD 286 (755)
Q Consensus 239 ~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~ 286 (755)
+.-.++.++|||||| ++..+....+++.+..-+ ..++++-||-+
T Consensus 117 p~~g~~KV~IIDEah--~Ls~~A~NALLKtLEEPp--~~viFILaTte 160 (484)
T PRK14956 117 PMGGKYKVYIIDEVH--MLTDQSFNALLKTLEEPP--AHIVFILATTE 160 (484)
T ss_pred hhcCCCEEEEEechh--hcCHHHHHHHHHHhhcCC--CceEEEeecCC
Confidence 344578899999999 677777777777775433 34444445543
No 230
>PRK09183 transposase/IS protein; Provisional
Probab=96.60 E-value=0.0076 Score=62.44 Aligned_cols=46 Identities=24% Similarity=0.199 Sum_probs=30.3
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMS 190 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q 190 (755)
+..+.++++.||+|+|||+++-.+..... ..+..++++ +...+..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~v~~~-~~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVRFT-TAADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEE-eHHHHHHH
Confidence 56688999999999999988776654432 233456554 33344433
No 231
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.48 E-value=0.011 Score=59.98 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=20.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.++.+++.||+|+|||+++-.+...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999877666544
No 232
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.43 E-value=0.0049 Score=64.80 Aligned_cols=86 Identities=22% Similarity=0.279 Sum_probs=52.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCC-Cc--cccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCc
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQ-GK--VGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKT 221 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~-~~--ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~ 221 (755)
.+++++++||||+||||.+..+........+ .+ ++-+-|.|..+.+....++..++.++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~----------------- 255 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK----------------- 255 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee-----------------
Confidence 4568999999999999888776554422212 23 333446677666666666665554321
Q ss_pred eEEEeCcHHHHHHHhCCCCCCCCCceEeecc
Q 048746 222 ILKYMTDGMLLREILSEPNLESYSVLMVDEA 252 (755)
Q Consensus 222 ~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEa 252 (755)
...++..+...+. .+.++++|+||.+
T Consensus 256 --~~~~~~~l~~~l~---~~~~~d~vliDt~ 281 (282)
T TIGR03499 256 --VARDPKELRKALD---RLRDKDLILIDTA 281 (282)
T ss_pred --ccCCHHHHHHHHH---HccCCCEEEEeCC
Confidence 0123444444442 2456899999975
No 233
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.40 E-value=0.0047 Score=64.47 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
...++++||+|+||||++-.++...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 3479999999999998887776553
No 234
>PRK10867 signal recognition particle protein; Provisional
Probab=96.40 E-value=0.0094 Score=65.94 Aligned_cols=122 Identities=25% Similarity=0.269 Sum_probs=68.5
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcccCCCccc--cCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEE
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVG--CTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILK 224 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~il--v~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~ 224 (755)
..++++|++||||||.+..+........+.+++ -.=+.|..|....+.+++..|.++- . .. .
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~---~--~~----~------- 164 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF---P--SG----D------- 164 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE---e--cC----C-------
Confidence 578999999999998777665433222133343 3457788777666666665554321 0 00 0
Q ss_pred EeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-cCCCcEEEEeccCC
Q 048746 225 YMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-FRSDLKLLISSATL 285 (755)
Q Consensus 225 v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-~~~~~~~il~SAT~ 285 (755)
-..|..+...........++++||||=+= |....+.+...+..+.. ..|+--+++++||.
T Consensus 165 ~~dp~~i~~~a~~~a~~~~~DvVIIDTaG-rl~~d~~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 165 GQDPVDIAKAALEEAKENGYDVVIVDTAG-RLHIDEELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcccCHHHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 01233333322111124578999999996 66544444444444433 34555577777765
No 235
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.35 E-value=0.018 Score=58.42 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=20.8
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHh
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+..+++.||+|+|||+++-.+....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999998876665443
No 236
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.32 E-value=0.018 Score=59.45 Aligned_cols=117 Identities=21% Similarity=0.222 Sum_probs=66.2
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCce
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTI 222 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~ 222 (755)
+.++.++++.||+|+|||+++..+..+.. .. +.-+..+++-+++.++..-... |
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~-g~sv~f~~~~el~~~Lk~~~~~--~---------------------- 155 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLAIAIGNELL-KA-GISVLFITAPDLLSKLKAAFDE--G---------------------- 155 (254)
T ss_pred hccCCcEEEECCCCCcHHHHHHHHHHHHH-Hc-CCeEEEEEHHHHHHHHHHHHhc--C----------------------
Confidence 34788999999999999988777766654 33 3334445777777766643322 0
Q ss_pred EEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCCHHHHHhhhC
Q 048746 223 LKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLDAEKFSDYFG 295 (755)
Q Consensus 223 I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~~~l~~~~~ 295 (755)
.....|.+ .+.+++++||||.=-......-...+...+......... ++|.-.+.+.+.+.|+
T Consensus 156 ---~~~~~l~~------~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN~~~~~~~~~~~ 218 (254)
T COG1484 156 ---RLEEKLLR------ELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSNLSFGEWDELFG 218 (254)
T ss_pred ---chHHHHHH------HhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccc-eeecCCChHHHHhhcc
Confidence 01233433 267899999999972222211111122222222222223 5666556666666665
No 237
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.32 E-value=0.016 Score=63.87 Aligned_cols=120 Identities=19% Similarity=0.242 Sum_probs=68.0
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcccCCCcccc--CccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEE
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGC--TQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILK 224 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv--~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~ 224 (755)
..++++|++|+||||.+..+..... ..+.+|++ .=|.|..|.++.+..++..+.++- + .. ..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~-~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~---~--~~-----~~----- 164 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQ-RKGFKPCLVCADTFRAGAFDQLKQNATKARIPFY---G--SY-----TE----- 164 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEcCcccchhHHHHHHHHhhccCCeEE---e--ec-----CC-----
Confidence 5789999999999988776654332 22334443 346787777776666665443321 0 00 00
Q ss_pred EeCcHHHH-HHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-cCCCcEEEEeccCC
Q 048746 225 YMTDGMLL-REILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-FRSDLKLLISSATL 285 (755)
Q Consensus 225 v~T~g~Ll-~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-~~~~~~~il~SAT~ 285 (755)
..|-.+. +.+.. ..-.++++||||=+- |....+-+..-+..+.. ..|+..+++++||.
T Consensus 165 -~dp~~i~~~~l~~-~~~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~ 224 (429)
T TIGR01425 165 -SDPVKIASEGVEK-FKKENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSI 224 (429)
T ss_pred -CCHHHHHHHHHHH-HHhCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEecccc
Confidence 0111111 11110 011468999999997 66544444444444433 45677888899987
No 238
>PRK12377 putative replication protein; Provisional
Probab=96.32 E-value=0.029 Score=57.45 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=60.0
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEEE
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKY 225 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~v 225 (755)
...+++.||+|+|||+++-.+..... ..+..++ ..+...+..++...+.. ..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~-~~g~~v~-~i~~~~l~~~l~~~~~~------------------~~-------- 152 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL-AKGRSVI-VVTVPDVMSRLHESYDN------------------GQ-------- 152 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCeE-EEEHHHHHHHHHHHHhc------------------cc--------
Confidence 46899999999999977766655442 2233343 34555555554332210 00
Q ss_pred eCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcC-C-CcEEEEeccCCCHHHHHhhh
Q 048746 226 MTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFR-S-DLKLLISSATLDAEKFSDYF 294 (755)
Q Consensus 226 ~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~-~-~~~~il~SAT~~~~~l~~~~ 294 (755)
+...+++ .+.++++|||||++ ....+.+....+-.++..| . ...+|+.| -++.+.+.+.+
T Consensus 153 -~~~~~l~------~l~~~dLLiIDDlg-~~~~s~~~~~~l~~ii~~R~~~~~ptiitS-Nl~~~~l~~~~ 214 (248)
T PRK12377 153 -SGEKFLQ------ELCKVDLLVLDEIG-IQRETKNEQVVLNQIIDRRTASMRSVGMLT-NLNHEAMSTLL 214 (248)
T ss_pred -hHHHHHH------HhcCCCEEEEcCCC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEc-CCCHHHHHHHh
Confidence 1112222 35789999999997 2223444444454444433 2 24455443 34445444443
No 239
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.0064 Score=69.11 Aligned_cols=43 Identities=30% Similarity=0.491 Sum_probs=31.3
Q ss_pred CCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 238 EPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 238 ~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
.+.-.+++++|||||| ++..+....+++.+..-++...+|+.+
T Consensus 114 ~p~~~~~kV~iIDE~~--~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 114 APTKGRFKVYLIDEVH--MLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred ccccCCcEEEEEEChH--hcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 4455688999999999 666677777777766655666666644
No 240
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.0063 Score=65.21 Aligned_cols=136 Identities=20% Similarity=0.295 Sum_probs=71.5
Q ss_pred CChHHHHHHHHHHHcC----CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHH---HHHHHHHHHhCCcc
Q 048746 131 PIYPYRDELLQAVNEY----QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAM---SVAARVSQEMGVKL 203 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~~~----~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~---q~a~~~~~~~~~~~ 203 (755)
++||+|...+..+... +-+++.||.|+|||+++-.+.... +|-.|...-+. ..++.+.. |...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~l--------lC~~~~~~~~Cg~C~sC~~~~~--g~HP 72 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAAL--------LCEAPQGGGACGSCKGCQLLRA--GSHP 72 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHH--------cCCCCCCCCCCCCCHHHHHHhc--CCCC
Confidence 4688999999886543 358899999999997765554332 11111100000 01111111 1100
Q ss_pred ccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEecc
Q 048746 204 GHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSA 283 (755)
Q Consensus 204 g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SA 283 (755)
.. +.+..+ ..+..|.|-.--.+.+.+...+.....+++|||||| .++......++|.+..-+++..+|+.|.
T Consensus 73 D~---~~i~~~---~~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~--~m~~~aaNaLLK~LEEPp~~~~fiL~t~ 144 (328)
T PRK05707 73 DN---FVLEPE---EADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAE--AMNRNAANALLKSLEEPSGDTVLLLISH 144 (328)
T ss_pred CE---EEEecc---CCCCCCCHHHHHHHHHHHhhccccCCCeEEEECChh--hCCHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 00 000000 001122222223344455555667789999999999 5666777788887665444555554444
Q ss_pred C
Q 048746 284 T 284 (755)
Q Consensus 284 T 284 (755)
-
T Consensus 145 ~ 145 (328)
T PRK05707 145 Q 145 (328)
T ss_pred C
Confidence 3
No 241
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.28 E-value=0.00066 Score=65.26 Aligned_cols=116 Identities=19% Similarity=0.261 Sum_probs=54.4
Q ss_pred EEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeec-------cccCCCCce
Q 048746 150 VIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRF-------EDCTSEKTI 222 (755)
Q Consensus 150 ii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~-------~~~~~~~~~ 222 (755)
|++|+-|-|||+.+-..+.........+|+|++|+.+.+..+.+.+...+. ..||.... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC-------------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcc-----ccccccccccccccccccccccce
Confidence 688999999998777665443222224799999999998888765543221 11211100 001123567
Q ss_pred EEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 223 LKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 223 I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
|.|..|..+... -...+++|||||= ++...+ ++.+... ...++||.|+
T Consensus 76 i~f~~Pd~l~~~------~~~~DlliVDEAA--aIp~p~----L~~ll~~---~~~vv~stTi 123 (177)
T PF05127_consen 76 IEFVAPDELLAE------KPQADLLIVDEAA--AIPLPL----LKQLLRR---FPRVVFSTTI 123 (177)
T ss_dssp --B--HHHHCCT----------SCEEECTGG--GS-HHH----HHHHHCC---SSEEEEEEEB
T ss_pred EEEECCHHHHhC------cCCCCEEEEechh--cCCHHH----HHHHHhh---CCEEEEEeec
Confidence 888888877432 2245899999997 555443 4444332 2356778887
No 242
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.28 E-value=0.012 Score=65.15 Aligned_cols=122 Identities=25% Similarity=0.257 Sum_probs=67.0
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcccCCCcc--ccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEE
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKV--GCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILK 224 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~i--lv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~ 224 (755)
..++++|++||||||.+..+........+.++ +-.=+.|..|.+..++++...+.++-. . ...
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~-----~-----~~~----- 164 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA-----L-----GKG----- 164 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe-----c-----CCC-----
Confidence 47899999999999887766554311123333 334467777776666666655543210 0 000
Q ss_pred EeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-cCCCcEEEEeccCC
Q 048746 225 YMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-FRSDLKLLISSATL 285 (755)
Q Consensus 225 v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-~~~~~~~il~SAT~ 285 (755)
..|..+...........++++||||=+- |....+.+...+..+.. ..++--+++++||.
T Consensus 165 -~~P~~i~~~al~~~~~~~~DvVIIDTaG-r~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t 224 (428)
T TIGR00959 165 -QSPVEIARRALEYAKENGFDVVIVDTAG-RLQIDEELMEELAAIKEILNPDEILLVVDAMT 224 (428)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccccCHHHHHHHHHHHHhhCCceEEEEEeccc
Confidence 1122222211111123568999999997 66544444444444433 34555567777765
No 243
>PRK08116 hypothetical protein; Validated
Probab=96.25 E-value=0.0074 Score=62.87 Aligned_cols=114 Identities=17% Similarity=0.191 Sum_probs=58.1
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEEE
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKY 225 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~v 225 (755)
+..+++.|++|+|||+++-.+..... ..+..++++ +...+...+... ++.. ..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~-~~~~~v~~~-~~~~ll~~i~~~----~~~~---------------~~------ 166 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELI-EKGVPVIFV-NFPQLLNRIKST----YKSS---------------GK------ 166 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEE-EHHHHHHHHHHH----Hhcc---------------cc------
Confidence 34599999999999977766655432 223344444 444444433322 1100 00
Q ss_pred eCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhc--CCCcEEEEeccCCCHHHHHhhh
Q 048746 226 MTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKF--RSDLKLLISSATLDAEKFSDYF 294 (755)
Q Consensus 226 ~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~--~~~~~~il~SAT~~~~~l~~~~ 294 (755)
.+...+++ .+.++++|||||++ ..-.+++....+-.++.. ....++|+.| ..+++.+.+.+
T Consensus 167 ~~~~~~~~------~l~~~dlLviDDlg-~e~~t~~~~~~l~~iin~r~~~~~~~IiTs-N~~~~eL~~~~ 229 (268)
T PRK08116 167 EDENEIIR------SLVNADLLILDDLG-AERDTEWAREKVYNIIDSRYRKGLPTIVTT-NLSLEELKNQY 229 (268)
T ss_pred ccHHHHHH------HhcCCCEEEEeccc-CCCCCHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHHHHHH
Confidence 01112222 24677899999997 222344444444444332 2334455444 45555554433
No 244
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.24 E-value=0.027 Score=60.83 Aligned_cols=29 Identities=34% Similarity=0.492 Sum_probs=21.8
Q ss_pred HHHcCC--eEEEEccCCCchhccHHHHHHHh
Q 048746 142 AVNEYQ--VLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 142 ~i~~~~--~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+..++ .+++.||+|+|||+++-.+....
T Consensus 30 ~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 30 AVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344454 79999999999998877665543
No 245
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.22 E-value=0.013 Score=59.94 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=23.4
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhcccCCCccccC
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT 181 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 181 (755)
+..+++.||+|+|||+++-.+..... ..+.+++++
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~-~~~~~v~y~ 79 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS-QRGRAVGYV 79 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEE
Confidence 36899999999999987766554432 123344444
No 246
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.20 E-value=0.011 Score=68.28 Aligned_cols=43 Identities=28% Similarity=0.512 Sum_probs=30.9
Q ss_pred CCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 238 EPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 238 ~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
.+.+.+++++||||+| .+.......+++.+....+...+|+.+
T Consensus 114 ~P~~gk~KVIIIDEad--~Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 114 APTAGKYKVYIIDEVH--MLSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhhhCCcEEEEEECcc--ccCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3456788999999999 455556666777776655667777655
No 247
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.0098 Score=70.29 Aligned_cols=46 Identities=33% Similarity=0.509 Sum_probs=32.9
Q ss_pred CCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCCHH
Q 048746 239 PNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLDAE 288 (755)
Q Consensus 239 ~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~~ 288 (755)
+.-.++.++|||||| ++..+....+++.+..-.+..++|+. |-+..
T Consensus 115 P~~gk~KViIIDEAh--~LT~eAqNALLKtLEEPP~~vrFILa--TTe~~ 160 (944)
T PRK14949 115 PSRGRFKVYLIDEVH--MLSRSSFNALLKTLEEPPEHVKFLLA--TTDPQ 160 (944)
T ss_pred hhcCCcEEEEEechH--hcCHHHHHHHHHHHhccCCCeEEEEE--CCCch
Confidence 444678999999999 66777778888877665566666664 54443
No 248
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.16 E-value=0.016 Score=67.19 Aligned_cols=47 Identities=28% Similarity=0.434 Sum_probs=32.5
Q ss_pred HHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEe
Q 048746 233 REILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLIS 281 (755)
Q Consensus 233 ~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~ 281 (755)
..+...+...++.++|||||| ++.......++|.+..-.+..++|+.
T Consensus 109 ~~~~~~p~~g~~KV~IIDEah--~Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 109 DNVQYAPARGRFKVYLIDEVH--MLSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred HHHHhhhhcCCCEEEEEechH--hCCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 333334455688999999999 66677777888877655555566665
No 249
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.14 E-value=0.047 Score=57.96 Aligned_cols=112 Identities=13% Similarity=0.182 Sum_probs=62.0
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCcccc-CccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceE
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGC-TQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTIL 223 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv-~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I 223 (755)
.++.+++.||+|+|||+++-.+..+.. ..+..+.+ ..| .++.++...+ +. +
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~v~~~~~~--~l~~~lk~~~----~~------------------~--- 206 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA-KKGVSSTLLHFP--EFIRELKNSI----SD------------------G--- 206 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEEHH--HHHHHHHHHH----hc------------------C---
Confidence 356899999999999988777766653 22333333 333 3443333221 10 0
Q ss_pred EEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHH-HHHHHHHhcC-CCcEEEEeccCCCHHHHHhhh
Q 048746 224 KYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILF-GLLKDLIKFR-SDLKLLISSATLDAEKFSDYF 294 (755)
Q Consensus 224 ~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~-~~l~~~~~~~-~~~~~il~SAT~~~~~l~~~~ 294 (755)
+...+++ .+.++++|||||..-.. .+++.. .++..++..| ...+-.++|.-++.+.+.+.|
T Consensus 207 ---~~~~~l~------~l~~~dlLiIDDiG~e~-~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 207 ---SVKEKID------AVKEAPVLMLDDIGAEQ-MSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred ---cHHHHHH------HhcCCCEEEEecCCCcc-ccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 1122222 25688999999998322 333333 4555554433 233345555566677777766
No 250
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.011 Score=67.62 Aligned_cols=42 Identities=33% Similarity=0.514 Sum_probs=29.4
Q ss_pred CCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 239 PNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 239 ~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
+...+++++|||||| ++.......+++.+...++...+|+.+
T Consensus 114 P~~gk~KV~IIDEVh--~LS~~A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 114 PTQGRFKVYLIDEVH--MLSTHSFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred hhcCCcEEEEEechH--hcCHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 445678999999999 666666666777665555556666644
No 251
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.13 E-value=0.021 Score=65.43 Aligned_cols=49 Identities=22% Similarity=0.442 Sum_probs=33.7
Q ss_pred HHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEecc
Q 048746 233 REILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSA 283 (755)
Q Consensus 233 ~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SA 283 (755)
+.+...+...+++++||||+| +++......++|.+..-.++.++|+.|-
T Consensus 114 e~~~~~P~~gr~KViIIDEah--~Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 114 DKAVYAPTAGRFKVYMIDEVH--MLTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred HHHHhchhcCCceEEEEEChH--hcCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 333334456688999999999 6666677778887665555666666653
No 252
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.09 E-value=0.012 Score=64.37 Aligned_cols=49 Identities=29% Similarity=0.487 Sum_probs=29.9
Q ss_pred HHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 232 LREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 232 l~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
...+...+...++.++||||+| .+..+....+++.+...++..++|+.+
T Consensus 108 ~~~~~~~p~~~~~kviIIDEa~--~l~~~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 108 LDNIYYSPSKSRFKVYLIDEVH--MLSRHSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred HHHHhcCcccCCceEEEEEChh--hcCHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 3333344556678899999999 444444555666655544555566543
No 253
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=96.09 E-value=0.032 Score=62.83 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=92.6
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcE-EEEeCCcccccCcCC
Q 048746 336 QSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARK-VVLATNIAETSLTID 414 (755)
Q Consensus 336 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~-vlvaT~i~~~Gidip 414 (755)
..+.++|+|+.-.+.++.+.+.|..+. +..+.+.|+....+|..+...|....+- .|++|-+.+-|||+.
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~yr~---------Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLT 1112 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVYRG---------YTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLT 1112 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHhhc---------cceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccccccc
Confidence 346789999988888888888887643 7788899999999999999999876544 589999999999999
Q ss_pred CeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCccccc
Q 048746 415 GIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYHK 475 (755)
Q Consensus 415 ~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~~ 475 (755)
+.+.||-|+- .-+ |.--.+++-|+-|-|.+..-.+|+|.++...++
T Consensus 1113 AADTViFYdS--------DWN-------PT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEE 1158 (1185)
T KOG0388|consen 1113 AADTVIFYDS--------DWN-------PTADQQAMDRAHRLGQTRDVTVYRLITRGTVEE 1158 (1185)
T ss_pred ccceEEEecC--------CCC-------cchhhHHHHHHHhccCccceeeeeecccccHHH
Confidence 9999995443 222 555566777777777777889999999876643
No 254
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.06 E-value=0.049 Score=63.06 Aligned_cols=50 Identities=28% Similarity=0.465 Sum_probs=35.0
Q ss_pred HHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 231 LLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 231 Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
++..+...+...++++|||||+| .+.......+++.+..-.+...+|+.+
T Consensus 120 Iie~~~~~P~~a~~KVvIIDEad--~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 120 IIESVRYRPVSARYKVYIIDEVH--MLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhchhcCCcEEEEEEChH--hCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 44444555677889999999999 555556666777766655667777754
No 255
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.05 E-value=0.042 Score=59.78 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=41.0
Q ss_pred ceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 221 TILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 221 ~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
..|.|-.--.+.+.+...+....+.+|||||+| .++......+++.+..-++...+|++|...
T Consensus 119 ~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead--~m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 119 TVITVDEVRELISFFGLTAAEGGWRVVIVDTAD--EMNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ccccHHHHHHHHHHhCcCcccCCCEEEEEechH--hcCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 345444434455555555566788999999999 556677777777776555556666665554
No 256
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.012 Score=67.02 Aligned_cols=50 Identities=30% Similarity=0.462 Sum_probs=33.1
Q ss_pred HHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 231 LLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 231 Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
++..+...+...++.++|||||| .+..+....+++.+..-++...+|+.+
T Consensus 107 ii~~~~~~p~~g~~kViIIDEa~--~ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 107 ILDNIQYMPSQGRYKVYLIDEVH--MLSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred HHHHHHhhhhcCCcEEEEEechh--hccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 44444445566788999999999 455556666676666544556666644
No 257
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.02 E-value=0.024 Score=71.48 Aligned_cols=124 Identities=18% Similarity=0.144 Sum_probs=77.3
Q ss_pred CChHHHHHHHHHHHc--CCeEEEEccCCCchhccHHHHHHH---hcccCCCccccCccHHHHHHHHHHHHHHHhCCcccc
Q 048746 131 PIYPYRDELLQAVNE--YQVLVIVGETGSGKTTQIPQYLHE---AGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGH 205 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~~--~~~vii~apTGsGKT~~ip~~l~~---~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~ 205 (755)
.+++-|.+++..+.. ++.++|.|..|+||||.+-.++.. .....+..|+.++||--+|..+.+ .|...
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e-----~Gi~A-- 907 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRS-----AGVDA-- 907 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHH-----hCchH--
Confidence 579999999999874 589999999999999886544321 111223468889999887766532 23211
Q ss_pred EEeeeeeccccCCCCceEEEeCcHHHHHH-----HhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEE
Q 048746 206 EVGYSIRFEDCTSEKTILKYMTDGMLLRE-----ILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLI 280 (755)
Q Consensus 206 ~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~-----l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il 280 (755)
.|-..|+.. ...+......++||||||= |++...+..+++.+.. .+.++|+
T Consensus 908 --------------------~TIasfL~~~~~~~~~~~~~~~~~~llIVDEAS--MV~~~~m~~ll~~~~~--~garvVL 963 (1623)
T PRK14712 908 --------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIAA--GGGRAVA 963 (1623)
T ss_pred --------------------hhHHHHhccccchhhcccCCCCCCcEEEEEccc--cccHHHHHHHHHhhhh--CCCEEEE
Confidence 111111111 0111123356899999997 8877665555554432 3578888
Q ss_pred eccCC
Q 048746 281 SSATL 285 (755)
Q Consensus 281 ~SAT~ 285 (755)
+.=+-
T Consensus 964 VGD~~ 968 (1623)
T PRK14712 964 SGDTD 968 (1623)
T ss_pred Ecchh
Confidence 77553
No 258
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.01 E-value=0.0061 Score=64.77 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=39.0
Q ss_pred hHHHHHHHHH-HHcCCeEEEEccCCCchhccHHHHHHHhcc-cCCCccccCccHHHH
Q 048746 133 YPYRDELLQA-VNEYQVLVIVGETGSGKTTQIPQYLHEAGY-TKQGKVGCTQPRRVA 187 (755)
Q Consensus 133 ~~~Q~~~l~~-i~~~~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~ilv~~P~r~l 187 (755)
.+.|.+++.. +..+.+++++|+|||||||++-.++..... ....+++++..+.|+
T Consensus 130 ~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 130 TEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 4566666655 677889999999999999888665544321 233478888777776
No 259
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.01 E-value=0.024 Score=58.26 Aligned_cols=44 Identities=14% Similarity=0.385 Sum_probs=33.9
Q ss_pred CCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 240 NLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 240 ~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
....+.+||+|||| ++..+.+..+.+.+.......++|+..--+
T Consensus 126 ~~~~fKiiIlDEcd--smtsdaq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 126 PCPPFKIIILDECD--SMTSDAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCcceEEEEechh--hhhHHHHHHHHHHHhccccceEEEEEcCCh
Confidence 45677999999999 778888888777777666677788766544
No 260
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.00 E-value=0.028 Score=67.27 Aligned_cols=43 Identities=26% Similarity=0.448 Sum_probs=31.6
Q ss_pred CCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 238 EPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 238 ~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
.+...+++++||||+| .+..+....+++.+........+|+.+
T Consensus 115 ~p~~~~~KV~IIDEad--~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 115 APAESRYKIFIIDEAH--MVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred chhcCCceEEEEechh--hcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3455789999999999 566677777777776666666666654
No 261
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.00 E-value=0.052 Score=60.99 Aligned_cols=48 Identities=25% Similarity=0.386 Sum_probs=33.2
Q ss_pred HHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 233 REILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 233 ~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
......|...++.++||||+| ++.......+++.+..-++...+|+.+
T Consensus 106 e~~~~~P~~~~~KVvIIDEah--~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 106 ENSCYLPISSKFKVYIIDEVH--MLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred HHHHhccccCCceEEEEeChH--hCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 334445667889999999999 666666667777766555556666544
No 262
>PHA02533 17 large terminase protein; Provisional
Probab=95.99 E-value=0.065 Score=61.22 Aligned_cols=157 Identities=16% Similarity=0.181 Sum_probs=87.3
Q ss_pred CCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHH-HHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccc-cE
Q 048746 129 TLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYL-HEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLG-HE 206 (755)
Q Consensus 129 ~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l-~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g-~~ 206 (755)
.+++.++|..++..+..++-.++..+=..|||+++..++ +.....++..+++++|++.-|..+.++++........ ..
T Consensus 57 Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~ 136 (534)
T PHA02533 57 KVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQ 136 (534)
T ss_pred ecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhh
Confidence 467899999999988777778888999999997776443 3333344568999999999999988877653321100 00
Q ss_pred Eeeee--eccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccC
Q 048746 207 VGYSI--RFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSAT 284 (755)
Q Consensus 207 vg~~~--~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT 284 (755)
.+... ...-....+..|.+.|..- +. ..=.+.+++|+||+|...-..+++..+...+ ......+++++|.+
T Consensus 137 ~~i~~~~~~~I~l~NGS~I~~lss~~--~t----~rG~~~~~liiDE~a~~~~~~e~~~ai~p~l-asg~~~r~iiiSTp 209 (534)
T PHA02533 137 PGIVEWNKGSIELENGSKIGAYASSP--DA----VRGNSFAMIYIDECAFIPNFIDFWLAIQPVI-SSGRSSKIIITSTP 209 (534)
T ss_pred cceeecCccEEEeCCCCEEEEEeCCC--Cc----cCCCCCceEEEeccccCCCHHHHHHHHHHHH-HcCCCceEEEEECC
Confidence 01000 0000012345555544321 00 0112456799999993211113333332222 22233566666666
Q ss_pred CCHHHHHh
Q 048746 285 LDAEKFSD 292 (755)
Q Consensus 285 ~~~~~l~~ 292 (755)
-....+-+
T Consensus 210 ~G~n~fye 217 (534)
T PHA02533 210 NGLNHFYD 217 (534)
T ss_pred CchhhHHH
Confidence 53332443
No 263
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.97 E-value=0.024 Score=64.00 Aligned_cols=44 Identities=20% Similarity=0.096 Sum_probs=26.6
Q ss_pred CeEEEEccCCCchhccHHHHHHHhccc-CCCccccCccHHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYT-KQGKVGCTQPRRVAAMSV 191 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r~la~q~ 191 (755)
+.+++.||+|+|||+++-.+..+.... .+.+++++ +...+..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi-~~~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV-TSEKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHHH
Confidence 468999999999997766555443221 13355555 444444433
No 264
>PRK06921 hypothetical protein; Provisional
Probab=95.97 E-value=0.063 Score=55.84 Aligned_cols=45 Identities=22% Similarity=0.158 Sum_probs=28.6
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMS 190 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q 190 (755)
.+..+++.|+||+|||+++-.++.+.....+..++++ +...+..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~-~~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYF-PFVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEE-EHHHHHHH
Confidence 4678999999999999877666554422113355554 44444443
No 265
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.93 E-value=0.01 Score=62.82 Aligned_cols=55 Identities=29% Similarity=0.344 Sum_probs=38.7
Q ss_pred HHHHHHH-HHHHcCCeEEEEccCCCchhccHHHHHHHhcc-cCCCccccCccHHHHH
Q 048746 134 PYRDELL-QAVNEYQVLVIVGETGSGKTTQIPQYLHEAGY-TKQGKVGCTQPRRVAA 188 (755)
Q Consensus 134 ~~Q~~~l-~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~ilv~~P~r~la 188 (755)
+.+.+.+ .++..+.+++++|+|||||||++-.++..... .+..+++++..+.|+.
T Consensus 119 ~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 119 AAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhc
Confidence 3344444 44777889999999999999988766644322 2245788888887763
No 266
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.91 E-value=0.032 Score=64.53 Aligned_cols=49 Identities=27% Similarity=0.458 Sum_probs=32.6
Q ss_pred HHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 232 LREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 232 l~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
+..+...+...+++++||||+| ++..+....+++.+..-.+...+|+.+
T Consensus 113 i~~~~~~p~~g~~KV~IIDEvh--~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 113 LEQAVYKPVQGRFKVFMIDEVH--MLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHhCcccCCceEEEEEChh--hCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 3344445566789999999999 566666666776665544555666544
No 267
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.89 E-value=0.017 Score=55.33 Aligned_cols=54 Identities=20% Similarity=0.317 Sum_probs=37.5
Q ss_pred HHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 230 MLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 230 ~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
.+...+...+.-..++++|||||| .+..+....++|.+..-+++..+|++|-.+
T Consensus 89 ~i~~~~~~~~~~~~~KviiI~~ad--~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 89 EIIEFLSLSPSEGKYKVIIIDEAD--KLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp HHHHHCTSS-TTSSSEEEEEETGG--GS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHHHHHHHHHhcCCceEEEeehHh--hhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 334444444555789999999999 677778888888887766677777777654
No 268
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.81 E-value=0.041 Score=63.33 Aligned_cols=47 Identities=26% Similarity=0.387 Sum_probs=33.7
Q ss_pred HHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 234 EILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 234 ~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
.+...+...++.++||||+| ++..+....+++.+..-.+...+|+.+
T Consensus 109 ~~~~~P~~~~~KVvIIDEah--~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 109 RAFYAPAQSRYRIFIVDEAH--MVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHhhhhcCCceEEEEECCC--cCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 33344566789999999999 667777777777776655566666655
No 269
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.80 E-value=0.015 Score=67.93 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=49.8
Q ss_pred ChHHHHHHHHH-HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHH
Q 048746 132 IYPYRDELLQA-VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQ 197 (755)
Q Consensus 132 l~~~Q~~~l~~-i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~ 197 (755)
++.-|++++.. +......+|.|-+|+||||.+..++... ...+.+|+.+.=|-.++..+..++..
T Consensus 670 LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL-~~~gkkVLLtsyThsAVDNILiKL~~ 735 (1100)
T KOG1805|consen 670 LNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKIL-VALGKKVLLTSYTHSAVDNILIKLKG 735 (1100)
T ss_pred cCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHH-HHcCCeEEEEehhhHHHHHHHHHHhc
Confidence 55566666655 5667788999999999998877665443 23467899999999999988877765
No 270
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.80 E-value=0.033 Score=57.91 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=17.2
Q ss_pred CCeEEEEccCCCchhccHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQY 166 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~ 166 (755)
..++++.||+|+|||+++-.+
T Consensus 42 ~~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHH
Confidence 357999999999999776544
No 271
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.79 E-value=0.012 Score=70.19 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=47.3
Q ss_pred CChHHHHHHHHH----HHcCCeEEEEccCCCchh-ccHHHHHHH-hcccCCCccccCccHHHHHHHHHHHHHH
Q 048746 131 PIYPYRDELLQA----VNEYQVLVIVGETGSGKT-TQIPQYLHE-AGYTKQGKVGCTQPRRVAAMSVAARVSQ 197 (755)
Q Consensus 131 Pl~~~Q~~~l~~----i~~~~~vii~apTGsGKT-~~ip~~l~~-~~~~~~~~ilv~~P~r~la~q~a~~~~~ 197 (755)
|+++.|.+.+.. +..++++++.||||+||| .++-..+.. .......+|++...|..=..|+.+.+++
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 458899887776 567899999999999999 333333322 2122235899999988877777777766
No 272
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.78 E-value=0.033 Score=61.81 Aligned_cols=119 Identities=26% Similarity=0.355 Sum_probs=65.8
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhcccCCCccc--cCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceE
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVG--CTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTIL 223 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~il--v~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I 223 (755)
..+++++|++|+||||.+..+..... ..+.+++ ..-+.|..+.++.+.++...+.++ .+ .. ..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~-~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~---~~-----~~---~~--- 159 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFK-KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF---YG-----DP---DN--- 159 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE---Ee-----cC---Cc---
Confidence 46899999999999987776654332 1222333 333556666666666666555432 11 00 00
Q ss_pred EEeCcH-HHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-cCCCcEEEEeccCC
Q 048746 224 KYMTDG-MLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-FRSDLKLLISSATL 285 (755)
Q Consensus 224 ~v~T~g-~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-~~~~~~~il~SAT~ 285 (755)
..|. .+.+.+.. +..+++||||.+- |....+-++.-++.+.. ..++.-++.++||.
T Consensus 160 --~d~~~i~~~al~~---~~~~DvVIIDTAG-r~~~d~~lm~El~~l~~~~~pdevlLVvda~~ 217 (437)
T PRK00771 160 --KDAVEIAKEGLEK---FKKADVIIVDTAG-RHALEEDLIEEMKEIKEAVKPDEVLLVIDATI 217 (437)
T ss_pred --cCHHHHHHHHHHH---hhcCCEEEEECCC-cccchHHHHHHHHHHHHHhcccceeEEEeccc
Confidence 0111 22222221 2335899999996 55444444444444433 45677788888876
No 273
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.77 E-value=0.093 Score=59.47 Aligned_cols=48 Identities=21% Similarity=0.334 Sum_probs=30.3
Q ss_pred HHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEE
Q 048746 231 LLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLI 280 (755)
Q Consensus 231 Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il 280 (755)
++......+...++.++||||+| .+....+..+++.+....+...+|+
T Consensus 116 iie~a~~~P~~~~~KVvIIDEa~--~Ls~~a~naLLk~LEepp~~~vfI~ 163 (507)
T PRK06645 116 IIESAEYKPLQGKHKIFIIDEVH--MLSKGAFNALLKTLEEPPPHIIFIF 163 (507)
T ss_pred HHHHHHhccccCCcEEEEEEChh--hcCHHHHHHHHHHHhhcCCCEEEEE
Confidence 33444455677889999999999 5555556666666554444444443
No 274
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.77 E-value=0.039 Score=70.55 Aligned_cols=124 Identities=18% Similarity=0.148 Sum_probs=78.1
Q ss_pred CCChHHHHHHHHHHHc--CCeEEEEccCCCchhccHHHHHHHh---cccCCCccccCccHHHHHHHHHHHHHHHhCCccc
Q 048746 130 LPIYPYRDELLQAVNE--YQVLVIVGETGSGKTTQIPQYLHEA---GYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLG 204 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~--~~~vii~apTGsGKT~~ip~~l~~~---~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g 204 (755)
..+++-|.+++..+.. ++.++|.|..|+||||++-.++... ....+..|+.++||--+|..+. + .|...
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~----e-~Gi~A- 1039 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR----S-AGVDA- 1039 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHH----h-cCcch-
Confidence 4579999999999876 4799999999999998876544321 1112346888899987776543 2 22211
Q ss_pred cEEeeeeeccccCCCCceEEEeCcHHHHHHH-----hCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEE
Q 048746 205 HEVGYSIRFEDCTSEKTILKYMTDGMLLREI-----LSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLL 279 (755)
Q Consensus 205 ~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l-----~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~i 279 (755)
.|-..++... ..+......++|||||+= |++...+..+++.+.. .+.++|
T Consensus 1040 ---------------------~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaS--Mv~~~~m~~Ll~~~~~--~garvV 1094 (1747)
T PRK13709 1040 ---------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIAA--GGGRAV 1094 (1747)
T ss_pred ---------------------hhHHHHhcccccccccccCCCCCCcEEEEEccc--cccHHHHHHHHHhhhc--CCCEEE
Confidence 1222222111 001122345899999997 8887766666655432 357888
Q ss_pred EeccC
Q 048746 280 ISSAT 284 (755)
Q Consensus 280 l~SAT 284 (755)
++.=+
T Consensus 1095 LVGD~ 1099 (1747)
T PRK13709 1095 SSGDT 1099 (1747)
T ss_pred Eecch
Confidence 77654
No 275
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.76 E-value=0.009 Score=58.53 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=34.7
Q ss_pred eEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCc
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVK 202 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~ 202 (755)
.+++.||+|+|||++.-+++.... ..+.+++++. +.+...++.+++.. +|..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~~g~~v~~~s-~e~~~~~~~~~~~~-~g~~ 52 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-ARGEPGLYVT-LEESPEELIENAES-LGWD 52 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-HCCCcEEEEE-CCCCHHHHHHHHHH-cCCC
Confidence 378999999999988888877653 3345666653 34555666655543 4544
No 276
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.76 E-value=0.027 Score=62.66 Aligned_cols=36 Identities=28% Similarity=0.224 Sum_probs=23.0
Q ss_pred CeEEEEccCCCchhccHHHHHHHhccc-CCCccccCc
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYT-KQGKVGCTQ 182 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~ 182 (755)
..+++.||+|+|||.++-.+..+.... .+.+++++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 468999999999997765544433211 134566653
No 277
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.76 E-value=0.018 Score=67.70 Aligned_cols=104 Identities=20% Similarity=0.255 Sum_probs=68.9
Q ss_pred CCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHH---HHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCcccc
Q 048746 129 TLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQ---YLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGH 205 (755)
Q Consensus 129 ~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~---~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~ 205 (755)
..|+++-|.+++.. ....++|.|..|||||+.+-. ++.......+.+|++++.+|.+|..+.+|+...+|.
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~---- 267 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGT---- 267 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCC----
Confidence 47899999998754 345689999999999955442 233333333458999999999999999999876541
Q ss_pred EEeeeeeccccCCCCceEEEeCcHHHHHHHhCC--CCCCCCCceEeeccc
Q 048746 206 EVGYSIRFEDCTSEKTILKYMTDGMLLREILSE--PNLESYSVLMVDEAH 253 (755)
Q Consensus 206 ~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~--~~l~~~~~vIiDEaH 253 (755)
..|.+.|-..+...+... .....++.+..|+..
T Consensus 268 ---------------~~v~v~TFHSlal~Il~~~~~~~p~~s~~~~d~~~ 302 (684)
T PRK11054 268 ---------------EDITARTFHALALHIIQQGSKKVPVISKLENDSKA 302 (684)
T ss_pred ---------------CCcEEEeHHHHHHHHHHHhhhcCCCcCccccchHH
Confidence 356778876665443221 122234444555543
No 278
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.73 E-value=0.02 Score=70.44 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=88.2
Q ss_pred CEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCC--CcEEEEeCCcccccCcCCCee
Q 048746 340 DILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEG--ARKVVLATNIAETSLTIDGIK 417 (755)
Q Consensus 340 ~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g--~~~vlvaT~i~~~Gidip~v~ 417 (755)
++|||.+-.....-+...+.... +..+.++|+++.+.|...++.|.++ ..-.+++|.+++.|+|.-..+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~---------~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~ 783 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALG---------IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGAD 783 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcC---------CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccc
Confidence 79999999998888888887742 5688899999999999999999885 456788889999999999999
Q ss_pred EEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCC---CCCEEEEeccCcccc
Q 048746 418 YVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRT---GPGKCFRLYTLHNYH 474 (755)
Q Consensus 418 ~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~---g~G~~~~l~~~~~~~ 474 (755)
+||.++. +..++...|...|+-|. .+=.+|++.+++..+
T Consensus 784 ~vi~~d~------------------~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiE 825 (866)
T COG0553 784 TVILFDP------------------WWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIE 825 (866)
T ss_pred eEEEecc------------------ccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHH
Confidence 9998887 66666666665555554 467789998887643
No 279
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.69 E-value=0.053 Score=63.09 Aligned_cols=136 Identities=21% Similarity=0.264 Sum_probs=80.4
Q ss_pred CCChHHHHHHHHHH---Hc--CCeEEEEccCCCchhccHHHHHHHhcccC-CCccccCccHHHHHHHHHHHHHHH---hC
Q 048746 130 LPIYPYRDELLQAV---NE--YQVLVIVGETGSGKTTQIPQYLHEAGYTK-QGKVGCTQPRRVAAMSVAARVSQE---MG 200 (755)
Q Consensus 130 lPl~~~Q~~~l~~i---~~--~~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~ilv~~P~r~la~q~a~~~~~~---~~ 200 (755)
+..+.-|.+++..+ .+ .+.+++.|.-|=|||..+-..+....... ...|+|+.|+.+.+..+.+...+- +|
T Consensus 210 l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg 289 (758)
T COG1444 210 LCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLG 289 (758)
T ss_pred hhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhC
Confidence 34455566655553 32 34899999999999966654332221111 358999999999999887655442 23
Q ss_pred CccccEEeeeeecc--ccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEE
Q 048746 201 VKLGHEVGYSIRFE--DCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKL 278 (755)
Q Consensus 201 ~~~g~~vg~~~~~~--~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~ 278 (755)
.+.+ +.+....+ ........|-|.+|.... ..-++||||||= .+...++..++.. .+.
T Consensus 290 ~~~~--v~~d~~g~~~~~~~~~~~i~y~~P~~a~---------~~~DllvVDEAA--aIplplL~~l~~~-------~~r 349 (758)
T COG1444 290 YKRK--VAPDALGEIREVSGDGFRIEYVPPDDAQ---------EEADLLVVDEAA--AIPLPLLHKLLRR-------FPR 349 (758)
T ss_pred Cccc--cccccccceeeecCCceeEEeeCcchhc---------ccCCEEEEehhh--cCChHHHHHHHhh-------cCc
Confidence 2211 11111011 111234457788886553 126799999997 6665544433332 346
Q ss_pred EEeccCC
Q 048746 279 LISSATL 285 (755)
Q Consensus 279 il~SAT~ 285 (755)
++||.|+
T Consensus 350 v~~sTTI 356 (758)
T COG1444 350 VLFSTTI 356 (758)
T ss_pred eEEEeee
Confidence 8999999
No 280
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.65 E-value=0.066 Score=56.09 Aligned_cols=121 Identities=23% Similarity=0.272 Sum_probs=76.0
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcccCCCccccCc--cHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEE
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ--PRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILK 224 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~--P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~ 224 (755)
.+++++|-.|+||||.+..+.+... ..+.+|++.+ ..|+.|.++.+...+..|..+-. .. ...+.+-
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~-~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~-------~~-~G~DpAa-- 208 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLK-QQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVIS-------GK-EGADPAA-- 208 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHH-HCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEc-------cC-CCCCcHH--
Confidence 4789999999999998887766542 2344555443 56999998888888877665421 11 1111111
Q ss_pred EeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-cCCCc------EEEEeccCC
Q 048746 225 YMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-FRSDL------KLLISSATL 285 (755)
Q Consensus 225 v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-~~~~~------~~il~SAT~ 285 (755)
...+.+. ...-+++++|++|-|- |+.+..-++.-++.+.+ ..+.. .++.+=||.
T Consensus 209 -----VafDAi~-~Akar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt 269 (340)
T COG0552 209 -----VAFDAIQ-AAKARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT 269 (340)
T ss_pred -----HHHHHHH-HHHHcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc
Confidence 1222221 1135689999999997 88777666666666655 33332 455668998
No 281
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.62 E-value=0.028 Score=64.84 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=41.1
Q ss_pred CCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC---CCEEEE
Q 048746 396 GARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG---PGKCFR 466 (755)
Q Consensus 396 g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g---~G~~~~ 466 (755)
..++.|++-.++-.|-|-|+|=.++- . ....|-.+=.|.+||.-|.. .|.-++
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIck-----L-------------~~S~SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICK-----L-------------RSSGSEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEE-----e-------------cCCCcchHHHHHhccceeeeeccccceec
Confidence 35899999999999999999866651 1 12567778899999999965 466655
No 282
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.59 E-value=0.034 Score=72.82 Aligned_cols=124 Identities=16% Similarity=0.110 Sum_probs=77.2
Q ss_pred CCChHHHHHHHHHHHc--CCeEEEEccCCCchhccHHH---HHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccc
Q 048746 130 LPIYPYRDELLQAVNE--YQVLVIVGETGSGKTTQIPQ---YLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLG 204 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~--~~~vii~apTGsGKT~~ip~---~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g 204 (755)
..+++.|.+++..+.. ++.++|.|+.|+||||++-. .+.+.....+..|+.++||-.+|..+.+ .|...
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~~-----~g~~a- 1091 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKS-----AGVQA- 1091 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHh-----cCCch-
Confidence 4689999999999765 47889999999999988732 2222212234578889999887766642 22211
Q ss_pred cEEeeeeeccccCCCCceEEEeCcHHHHHH---HhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEe
Q 048746 205 HEVGYSIRFEDCTSEKTILKYMTDGMLLRE---ILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLIS 281 (755)
Q Consensus 205 ~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~---l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~ 281 (755)
.|-..++.. ....+.+...++|||||+= |+.+..+..+++.+. .+..++|++
T Consensus 1092 ---------------------~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEas--Mv~~~~~~~l~~~~~--~~~ak~vlv 1146 (1960)
T TIGR02760 1092 ---------------------QTLDSFLTDISLYRNSGGDFRNTLFILDESS--MVSNFQLTHATELVQ--KSGSRAVSL 1146 (1960)
T ss_pred ---------------------HhHHHHhcCcccccccCCCCcccEEEEEccc--cccHHHHHHHHHhcc--CCCCEEEEe
Confidence 011111110 0112235567899999997 788766666555443 345677776
Q ss_pred ccC
Q 048746 282 SAT 284 (755)
Q Consensus 282 SAT 284 (755)
.=+
T Consensus 1147 GD~ 1149 (1960)
T TIGR02760 1147 GDI 1149 (1960)
T ss_pred CCh
Confidence 543
No 283
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.59 E-value=0.015 Score=68.67 Aligned_cols=104 Identities=21% Similarity=0.205 Sum_probs=65.7
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhccHHH-H--HHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEe
Q 048746 132 IYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQ-Y--LHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVG 208 (755)
Q Consensus 132 l~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~-~--l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg 208 (755)
+++-|.+++.. ....++|.|..|||||+.+-. + +.+..-.+..+|+++..|+.+|.++..|+.+.++..
T Consensus 3 Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~------ 74 (672)
T PRK10919 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRK------ 74 (672)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcc------
Confidence 57889888765 346688889999999954442 2 222211123489999999999999999998866521
Q ss_pred eeeeccccCCCCceEEEeCcHHHHHHHhCC-CC-CC-CCCceEeeccc
Q 048746 209 YSIRFEDCTSEKTILKYMTDGMLLREILSE-PN-LE-SYSVLMVDEAH 253 (755)
Q Consensus 209 ~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~-~~-l~-~~~~vIiDEaH 253 (755)
....+.++|-..+...+... .. +. .-++-|+|+.+
T Consensus 75 ----------~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~ 112 (672)
T PRK10919 75 ----------EARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTD 112 (672)
T ss_pred ----------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHH
Confidence 01246788876554433221 11 10 12355777765
No 284
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.56 E-value=0.013 Score=61.55 Aligned_cols=65 Identities=20% Similarity=0.103 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHc-CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHH
Q 048746 120 LEMLQEERKTLPIYPYRDELLQAVNE-YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAM 189 (755)
Q Consensus 120 ~~~l~~~~~~lPl~~~Q~~~l~~i~~-~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~ 189 (755)
+..+.+++. +++-+.+++..+-. ..+++++|.|||||||++-.++..... ..+++++.-|.+|-.
T Consensus 149 l~dli~~gt---~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~--~eRvItiEDtaELql 214 (355)
T COG4962 149 LLDLIIFGT---MIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDS--DERVITIEDTAELQL 214 (355)
T ss_pred HHHHHHcCC---cCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCC--cccEEEEeehhhhcc
Confidence 345555543 45667777776544 559999999999999998877655432 338999988877643
No 285
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.52 E-value=0.015 Score=55.04 Aligned_cols=35 Identities=37% Similarity=0.433 Sum_probs=25.0
Q ss_pred eEEEEccCCCchhccHHHHHHHhcccCCCccccCcc
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQP 183 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P 183 (755)
.+++.||+|+|||+++-.++..... .++.++++..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEEC
Confidence 3689999999999888877666533 3455665543
No 286
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.52 E-value=0.011 Score=63.12 Aligned_cols=55 Identities=24% Similarity=0.263 Sum_probs=38.6
Q ss_pred hHHHHHHHHH-HHcCCeEEEEccCCCchhccHHHHHHHhc-ccCCCccccCccHHHH
Q 048746 133 YPYRDELLQA-VNEYQVLVIVGETGSGKTTQIPQYLHEAG-YTKQGKVGCTQPRRVA 187 (755)
Q Consensus 133 ~~~Q~~~l~~-i~~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~ilv~~P~r~l 187 (755)
.+.|.+.+.. +..+.+++++|+|||||||++-.++.... ..+..+++++..+.++
T Consensus 134 ~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 134 TAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 3556666665 77889999999999999988766654321 1233477777776665
No 287
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.50 E-value=0.051 Score=61.02 Aligned_cols=47 Identities=23% Similarity=0.134 Sum_probs=28.1
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcc-cCCCccccCccHHHHHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGY-TKQGKVGCTQPRRVAAMSVAAR 194 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~ilv~~P~r~la~q~a~~ 194 (755)
+.+++.|++|+|||+++-.+...... .++.+++++.+ ..+...+...
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~ 189 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG-DEFARKAVDI 189 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHH
Confidence 45899999999999777544443211 22346666544 4455444433
No 288
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.48 E-value=0.13 Score=59.04 Aligned_cols=49 Identities=24% Similarity=0.424 Sum_probs=33.2
Q ss_pred HHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 232 LREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 232 l~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
+..+...+...+++++||||+| .+.......+++.+...++...+|+.+
T Consensus 108 ~~~~~~~p~~~~~kVvIIDEad--~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 108 LDNAQYAPTRGRFKVYIIDEVH--MLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred HHHHhhCcccCCceEEEEcCcc--cCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 3334445666788999999999 555555666777776655566666654
No 289
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.48 E-value=0.1 Score=55.88 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=16.6
Q ss_pred eEEEEccCCCchhccHHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+++.||+|+|||+++-.+...
T Consensus 45 ~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred EEEeeCcCCCCHHHHHHHHHHH
Confidence 4555899999999877665543
No 290
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.47 E-value=0.053 Score=61.10 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=18.3
Q ss_pred eEEEEccCCCchhccHHHHHHHh
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+|+.||+|+||||++-.+....
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999998877665443
No 291
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.46 E-value=0.017 Score=60.75 Aligned_cols=62 Identities=19% Similarity=0.134 Sum_probs=42.9
Q ss_pred HHhcCCCChHHHHHHHHHHHcC--CeEEEEccCCCchhccHHHHHHHhccc--CCCccccCccHHH
Q 048746 125 EERKTLPIYPYRDELLQAVNEY--QVLVIVGETGSGKTTQIPQYLHEAGYT--KQGKVGCTQPRRV 186 (755)
Q Consensus 125 ~~~~~lPl~~~Q~~~l~~i~~~--~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~~P~r~ 186 (755)
+.-+..|....|.-++++++.. +-|.+.|+-|||||.++...-++.... ...+++|+-|+-.
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vp 287 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVP 287 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcC
Confidence 3446789899999999998775 568889999999995544333332222 2247888777643
No 292
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.37 E-value=0.038 Score=53.46 Aligned_cols=120 Identities=23% Similarity=0.287 Sum_probs=56.5
Q ss_pred eEEEEccCCCchhccHHHHHHHhcccCCCccccC--ccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEEE
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT--QPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKY 225 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~v 225 (755)
.+++.|++|+|||+.+-.+...... .+.+++++ -+.|.-........+...+..+ - .. ...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~-~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~----~----~~--~~~------ 64 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK-KGKKVLLVAADTYRPAAIEQLRVLGEQVGVPV----F----EE--GEG------ 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCChHHHHHHHHhcccCCeEE----E----ec--CCC------
Confidence 5789999999999877665544321 23345443 2444333333323333222111 0 00 000
Q ss_pred eCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-cCCCcEEEEeccCC
Q 048746 226 MTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-FRSDLKLLISSATL 285 (755)
Q Consensus 226 ~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-~~~~~~~il~SAT~ 285 (755)
..+..++........-.++++||||.......+.+.+ ..+..+.. ..++..++.++|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l-~~l~~l~~~~~~~~~~lVv~~~~ 124 (173)
T cd03115 65 KDPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLM-EELKKIKRVVKPDEVLLVVDAMT 124 (173)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHHH-HHHHHHHhhcCCCeEEEEEECCC
Confidence 1122222211111123478899999998222322333 33333333 23566677777754
No 293
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.33 E-value=0.024 Score=58.95 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHc---------CCeEEEEccCCCchhccHHHHHHHhcccCC------CccccCcc
Q 048746 119 ALEMLQEERKTLPIYPYRDELLQAVNE---------YQVLVIVGETGSGKTTQIPQYLHEAGYTKQ------GKVGCTQP 183 (755)
Q Consensus 119 ~~~~l~~~~~~lPl~~~Q~~~l~~i~~---------~~~vii~apTGsGKT~~ip~~l~~~~~~~~------~~ilv~~P 183 (755)
.+..|.+-++ .. |+.-.++++.+.. -.+++++|+||-|||+++-.+...+..... +.+.+-.|
T Consensus 27 RI~~i~~~rW-Ig-Y~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P 104 (302)
T PF05621_consen 27 RIAYIRADRW-IG-YPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMP 104 (302)
T ss_pred HHHHHhcCCe-ec-CHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecC
Confidence 3344443333 33 5555666655432 268999999999999999888765532211 13344456
Q ss_pred HHHHHHHHHHHHHHHhCCcc
Q 048746 184 RRVAAMSVAARVSQEMGVKL 203 (755)
Q Consensus 184 ~r~la~q~a~~~~~~~~~~~ 203 (755)
...-....+..+-..+|.+.
T Consensus 105 ~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 105 PEPDERRFYSAILEALGAPY 124 (302)
T ss_pred CCCChHHHHHHHHHHhCccc
Confidence 66666666777777677654
No 294
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.30 E-value=0.012 Score=58.42 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=17.6
Q ss_pred CeEEEEccCCCchhccHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.++|+.||+|+||||++-.+..+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHHHhc
Confidence 47999999999999876554433
No 295
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.29 E-value=0.025 Score=57.16 Aligned_cols=32 Identities=28% Similarity=0.550 Sum_probs=24.0
Q ss_pred HHHHHHc--CCeEEEEccCCCchhccHHHHHHHh
Q 048746 139 LLQAVNE--YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 139 ~l~~i~~--~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+...+.+ ++.++|.||.|+|||+++-.++...
T Consensus 11 l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 11 LKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 3344444 5899999999999998877776554
No 296
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.26 E-value=0.18 Score=57.70 Aligned_cols=163 Identities=17% Similarity=0.212 Sum_probs=97.5
Q ss_pred chHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHH-HHHHHhcccCCCccccCccHHHHHHHHHHH
Q 048746 116 EKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIP-QYLHEAGYTKQGKVGCTQPRRVAAMSVAAR 194 (755)
Q Consensus 116 ~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip-~~l~~~~~~~~~~ilv~~P~r~la~q~a~~ 194 (755)
+-..+..+.+.-+.+|.. -..++.. .+.+-.++..|==.|||+.+- .+......-.+.+|++++|.+..+..+.++
T Consensus 227 ~a~r~~~~lk~~Fdi~~~--s~~~~~~-fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~e 303 (738)
T PHA03368 227 HAERVERFLRTVFNTPLF--SDAAVRH-FRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEE 303 (738)
T ss_pred HHHHHHHHHHHHcCCccc--cHHHHHH-hhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHH
Confidence 335555666666777743 3344444 455678888999999996444 333233222466999999999999999988
Q ss_pred HHHHhCCc-cccE----Eeeee--eccccCCCCceEEEeCcHHHHHHHhCCC--CCCCCCceEeecccccCCccchHHHH
Q 048746 195 VSQEMGVK-LGHE----VGYSI--RFEDCTSEKTILKYMTDGMLLREILSEP--NLESYSVLMVDEAHERTLSTDILFGL 265 (755)
Q Consensus 195 ~~~~~~~~-~g~~----vg~~~--~~~~~~~~~~~I~v~T~g~Ll~~l~~~~--~l~~~~~vIiDEaHer~~~~d~~~~~ 265 (755)
+...+..- .+.. -|-.+ .+.+ .....|.+.+.. +.. .=.+++++|||||+ -+..+.+..+
T Consensus 304 I~~~le~~f~~~~v~~vkGe~I~i~f~n--G~kstI~FaSar-------ntNsiRGqtfDLLIVDEAq--FIk~~al~~i 372 (738)
T PHA03368 304 IGARLRQWFGASRVDHVKGETISFSFPD--GSRSTIVFASSH-------NTNGIRGQDFNLLFVDEAN--FIRPDAVQTI 372 (738)
T ss_pred HHHHHhhhcchhheeeecCcEEEEEecC--CCccEEEEEecc-------CCCCccCCcccEEEEechh--hCCHHHHHHH
Confidence 87754211 0111 11111 1111 112355555321 111 22378999999999 5666777777
Q ss_pred HHHHHhcCCCcEEEEeccCCCHHHHHhhh
Q 048746 266 LKDLIKFRSDLKLLISSATLDAEKFSDYF 294 (755)
Q Consensus 266 l~~~~~~~~~~~~il~SAT~~~~~l~~~~ 294 (755)
+--+... +.++|.+|-|-..+.-..|+
T Consensus 373 lp~l~~~--n~k~I~ISS~Ns~~~sTSFL 399 (738)
T PHA03368 373 MGFLNQT--NCKIIFVSSTNTGKASTSFL 399 (738)
T ss_pred HHHHhcc--CccEEEEecCCCCccchHHH
Confidence 7444333 88999999997554444443
No 297
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.25 E-value=0.067 Score=52.57 Aligned_cols=48 Identities=15% Similarity=0.240 Sum_probs=29.3
Q ss_pred HHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEe
Q 048746 232 LREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLIS 281 (755)
Q Consensus 232 l~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~ 281 (755)
.+.+...+......+|||||+| .+..+....+++.+...+++..+|+.
T Consensus 85 ~~~~~~~~~~~~~kviiide~~--~l~~~~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 85 VEFLSRTPQESGRRVVIIEDAE--RMNEAAANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred HHHHccCcccCCeEEEEEechh--hhCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 4555555667788999999999 33444455555555443334444444
No 298
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.24 E-value=0.035 Score=66.43 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=65.8
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhccHHH-H--HHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEe
Q 048746 132 IYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQ-Y--LHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVG 208 (755)
Q Consensus 132 l~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~-~--l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg 208 (755)
+++-|.+++.. ....++|.|..|||||+.+-. + +....-.+..+|+++..|+.+|.++.+|+.+.++..
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~------ 76 (715)
T TIGR01075 5 LNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTS------ 76 (715)
T ss_pred cCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhccc------
Confidence 68889988865 346789999999999954442 2 222211223489999999999999999998865421
Q ss_pred eeeeccccCCCCceEEEeCcHHHHHHH-hCCCCCC--CCCceEeeccc
Q 048746 209 YSIRFEDCTSEKTILKYMTDGMLLREI-LSEPNLE--SYSVLMVDEAH 253 (755)
Q Consensus 209 ~~~~~~~~~~~~~~I~v~T~g~Ll~~l-~~~~~l~--~~~~vIiDEaH 253 (755)
...+.++|-..+...+ ....... .-++-|+|+.+
T Consensus 77 -----------~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d 113 (715)
T TIGR01075 77 -----------ARGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSDD 113 (715)
T ss_pred -----------ccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHH
Confidence 1246678876554333 2211100 11345778765
No 299
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.24 E-value=0.039 Score=66.04 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhccHH-HH--HHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEe
Q 048746 132 IYPYRDELLQAVNEYQVLVIVGETGSGKTTQIP-QY--LHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVG 208 (755)
Q Consensus 132 l~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip-~~--l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg 208 (755)
+++-|.+++.. ....++|.|..|||||+.+- .+ +....-.+..+|+++.-|+.+|.++.+|+.+.++..
T Consensus 10 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~------ 81 (721)
T PRK11773 10 LNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS------ 81 (721)
T ss_pred cCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC------
Confidence 78999998865 34678899999999995443 22 222111223489999999999999999998865521
Q ss_pred eeeeccccCCCCceEEEeCcHHHHHHHh-CCCCCC--CCCceEeeccc
Q 048746 209 YSIRFEDCTSEKTILKYMTDGMLLREIL-SEPNLE--SYSVLMVDEAH 253 (755)
Q Consensus 209 ~~~~~~~~~~~~~~I~v~T~g~Ll~~l~-~~~~l~--~~~~vIiDEaH 253 (755)
...+.++|-..+...+. ...... .-++-|+|+.+
T Consensus 82 -----------~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d 118 (721)
T PRK11773 82 -----------QGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDD 118 (721)
T ss_pred -----------CCCCEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHH
Confidence 12466788765544332 211100 12345778765
No 300
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.24 E-value=0.014 Score=62.63 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=36.1
Q ss_pred HHHHHH-HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHH
Q 048746 137 DELLQA-VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAA 188 (755)
Q Consensus 137 ~~~l~~-i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la 188 (755)
.+++.. +..+.+++++|||||||||++-.++... ....+++.+..+.|+.
T Consensus 152 ~~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i--~~~~rivtiEd~~El~ 202 (344)
T PRK13851 152 EAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAI--PPQERLITIEDTLELV 202 (344)
T ss_pred HHHHHHHHHcCCeEEEECCCCccHHHHHHHHHccc--CCCCCEEEECCCcccc
Confidence 344444 6778999999999999999887665433 3345788887777653
No 301
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.22 E-value=0.046 Score=62.57 Aligned_cols=50 Identities=30% Similarity=0.412 Sum_probs=30.5
Q ss_pred HHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 231 LLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 231 Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
+...+...|...+++++|||||| .+..+....+++.+..-++...+|+++
T Consensus 107 Ii~~~~~~P~~~~~KVIIIDEad--~Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 107 IIDNINYLPTTFKYKVYIIDEAH--MLSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred HHHHHHhchhhCCcEEEEEechH--hCCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 33444445566778999999999 445555555666555444445555544
No 302
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.22 E-value=0.15 Score=59.30 Aligned_cols=47 Identities=30% Similarity=0.454 Sum_probs=29.0
Q ss_pred HHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEe
Q 048746 233 REILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLIS 281 (755)
Q Consensus 233 ~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~ 281 (755)
..+...+.+.+..+|||||+| .+..+....+++.+..-.+...+|+.
T Consensus 110 ~~~~~~p~~~~~kVvIIDEa~--~L~~~a~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 110 ERVQFRPALARYKVYIIDEVH--MLSTAAFNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred HHHhhCcccCCeEEEEEeChH--hCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 334445567789999999999 45555555566665444444444443
No 303
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=95.14 E-value=0.017 Score=68.63 Aligned_cols=116 Identities=20% Similarity=0.196 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHH---HHHhCCccccEE
Q 048746 133 YPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARV---SQEMGVKLGHEV 207 (755)
Q Consensus 133 ~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~---~~~~~~~~g~~v 207 (755)
|++| ++-.+.=++--|.-..||=||| ..+|.++.. +...+.-+|++. --||.-=++.+ -+.+|..+|...
T Consensus 140 ydVQ--LiGgivLh~G~IAEM~TGEGKTLvatlp~yLnA--L~G~gVHvVTvN-DYLA~RDaewm~p~y~flGLtVg~i~ 214 (1025)
T PRK12900 140 YDVQ--LIGGIVLHSGKISEMATGEGKTLVSTLPTFLNA--LTGRGVHVVTVN-DYLAQRDKEWMNPVFEFHGLSVGVIL 214 (1025)
T ss_pred cchH--HhhhHHhhcCCccccCCCCCcchHhHHHHHHHH--HcCCCcEEEeec-hHhhhhhHHHHHHHHHHhCCeeeeeC
Confidence 5555 5555433444478999999999 445555543 333333344443 33444333333 334455554332
Q ss_pred eeeeeccccCCCCceEEEeCcHH-----HHHHHhCCC---CCCCCCceEeeccc
Q 048746 208 GYSIRFEDCTSEKTILKYMTDGM-----LLREILSEP---NLESYSVLMVDEAH 253 (755)
Q Consensus 208 g~~~~~~~~~~~~~~I~v~T~g~-----Ll~~l~~~~---~l~~~~~vIiDEaH 253 (755)
......+....-.++|+|+|..- |.+.+...+ ....+.+.||||||
T Consensus 215 ~~~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvD 268 (1025)
T PRK12900 215 NTMRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVD 268 (1025)
T ss_pred CCCCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechh
Confidence 21111111223478999999843 333332222 35678899999999
No 304
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.13 E-value=0.017 Score=58.74 Aligned_cols=22 Identities=41% Similarity=0.677 Sum_probs=18.1
Q ss_pred EEEEccCCCchhccHHHHHHHh
Q 048746 149 LVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 149 vii~apTGsGKT~~ip~~l~~~ 170 (755)
++|.|+.|||||+.+-.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999887776553
No 305
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.13 E-value=0.022 Score=58.12 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=36.0
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCcc
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKL 203 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~ 203 (755)
.+..+++.|++|||||++.-+++++.. ..+.+++++.- .+-..++.+++.. +|..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~-~~g~~~~y~~~-e~~~~~~~~~~~~-~g~~~ 79 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL-KQGKKVYVITT-ENTSKSYLKQMES-VKIDI 79 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH-hCCCEEEEEEc-CCCHHHHHHHHHH-CCCCh
Confidence 578899999999999999888877653 23445655532 2333445544433 55433
No 306
>PLN03025 replication factor C subunit; Provisional
Probab=95.12 E-value=0.053 Score=58.19 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=19.2
Q ss_pred CeEEEEccCCCchhccHHHHHHHh
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.++++.||+|+|||+.+-.+..+.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999998776665443
No 307
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.10 E-value=0.074 Score=60.44 Aligned_cols=45 Identities=27% Similarity=0.381 Sum_probs=28.0
Q ss_pred HhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEe
Q 048746 235 ILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLIS 281 (755)
Q Consensus 235 l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~ 281 (755)
+...+.+.+..+|||||+| .+..+.+..+++.+....+...+|+.
T Consensus 108 ~~~~p~~~~~kVVIIDEad--~ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 108 VLLAPLRGGRKVYILDEAH--MMSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred HhhccccCCCeEEEEECcc--ccCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3344566788999999999 34445555666665554444444443
No 308
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.09 E-value=0.024 Score=55.65 Aligned_cols=36 Identities=36% Similarity=0.479 Sum_probs=28.2
Q ss_pred hHHHHHHHHH-HHcCCeEEEEccCCCchhccHHHHHH
Q 048746 133 YPYRDELLQA-VNEYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 133 ~~~Q~~~l~~-i~~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
.+-+.+++.. +..+..++++|||||||||++-.++-
T Consensus 11 ~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 11 SPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3556666665 67799999999999999998866543
No 309
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.09 E-value=0.076 Score=60.88 Aligned_cols=45 Identities=24% Similarity=0.200 Sum_probs=27.9
Q ss_pred CeEEEEccCCCchhccHHHHHHHhccc-CCCccccCccHHHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYT-KQGKVGCTQPRRVAAMSVA 192 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r~la~q~a 192 (755)
+.++|.|++|+|||.++-.+....... .+.+++++ +...++.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yi-taeef~~el~ 360 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYV-SSEEFTNEFI 360 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe-eHHHHHHHHH
Confidence 348999999999997776665554221 23456555 4444444433
No 310
>CHL00181 cbbX CbbX; Provisional
Probab=95.05 E-value=0.039 Score=58.04 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=17.3
Q ss_pred CCeEEEEccCCCchhccHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQY 166 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~ 166 (755)
+.++++.||+|+|||+++-.+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 557999999999999766554
No 311
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.97 E-value=0.066 Score=62.38 Aligned_cols=46 Identities=26% Similarity=0.353 Sum_probs=28.6
Q ss_pred HHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEE
Q 048746 233 REILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLI 280 (755)
Q Consensus 233 ~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il 280 (755)
..+...+...++.+||||||| .+..+....+++.+..-.....+|+
T Consensus 111 ~~a~~~p~~~~~KViIIDEad--~Lt~~a~naLLK~LEePp~~tvfIL 156 (620)
T PRK14948 111 ERAQFAPVQARWKVYVIDECH--MLSTAAFNALLKTLEEPPPRVVFVL 156 (620)
T ss_pred HHHhhChhcCCceEEEEECcc--ccCHHHHHHHHHHHhcCCcCeEEEE
Confidence 333444556788999999999 4555556666666654334444444
No 312
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.96 E-value=0.031 Score=53.10 Aligned_cols=116 Identities=20% Similarity=0.253 Sum_probs=58.8
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCce
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTI 222 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~ 222 (755)
+..|+.+.+.|++||||||++-.+.-... ...+.+.+--. .+......++.. .++|...
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~--~~~~~~~~~~~~--------~i~~~~q---------- 80 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGK--DIAKLPLEELRR--------RIGYVPQ---------- 80 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCE--EcccCCHHHHHh--------ceEEEee----------
Confidence 35788999999999999987765543221 12222221110 000000001111 1222211
Q ss_pred EEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCC-CcEEEEecc
Q 048746 223 LKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRS-DLKLLISSA 283 (755)
Q Consensus 223 I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~-~~~~il~SA 283 (755)
.+.|...+.........+.+++|+||.- ..++......+...+..... +..+++.|-
T Consensus 81 ---lS~G~~~r~~l~~~l~~~~~i~ilDEp~-~~lD~~~~~~l~~~l~~~~~~~~tii~~sh 138 (157)
T cd00267 81 ---LSGGQRQRVALARALLLNPDLLLLDEPT-SGLDPASRERLLELLRELAEEGRTVIIVTH 138 (157)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3444443333222234557899999998 78887766666665554332 344444443
No 313
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.95 E-value=0.13 Score=54.79 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=38.2
Q ss_pred HHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 230 MLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 230 ~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
.+.+.+...+....++++|||+|| .++......++|.+..-+++..+|+.|...
T Consensus 100 ~l~~~~~~~p~~g~~kV~iI~~ae--~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 100 EISQKLALTPQYGIAQVVIVDPAD--AINRAACNALLKTLEEPSPGRYLWLISAQP 153 (319)
T ss_pred HHHHHHhhCcccCCcEEEEeccHh--hhCHHHHHHHHHHhhCCCCCCeEEEEECCh
Confidence 344455556667789999999999 556667778888776655566777776543
No 314
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=94.95 E-value=0.0084 Score=62.09 Aligned_cols=34 Identities=32% Similarity=0.505 Sum_probs=25.8
Q ss_pred HHHHHHHHcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 137 DELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 137 ~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
...+.-...|.-.|+.|||||||||++.-|.++.
T Consensus 264 Nk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL 297 (514)
T KOG2373|consen 264 NKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDL 297 (514)
T ss_pred HHHhccCCCCceEEEecCCCCCceeEehHhhHHH
Confidence 3333334456789999999999999988887765
No 315
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.91 E-value=0.11 Score=58.20 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=23.8
Q ss_pred CeEEEEccCCCchhccHHHHHHHhccc-CCCccccCcc
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYT-KQGKVGCTQP 183 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P 183 (755)
+.+++.||+|+|||.++-.+....... .+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 459999999999997765554432111 2346666643
No 316
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.90 E-value=0.094 Score=60.82 Aligned_cols=50 Identities=28% Similarity=0.473 Sum_probs=34.0
Q ss_pred HHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 231 LLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 231 Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
+...+...+...+++++||||+| ++..+....+++.+..-.+...+|+.+
T Consensus 107 l~~~~~~~p~~~~~KVvIIdev~--~Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 107 LRENVKYLPSRSRYKIFIIDEVH--MLSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred HHHHHHhccccCCceEEEEEChh--hCCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 33444445667889999999999 666666667777766555556666544
No 317
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.89 E-value=0.14 Score=55.00 Aligned_cols=61 Identities=21% Similarity=0.121 Sum_probs=40.8
Q ss_pred EEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 223 LKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 223 I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
|.|-.-..|.+.+...+....++++|||+|| .++......++|.+..-+++..+|+.|..+
T Consensus 112 I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae--~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 172 (342)
T PRK06964 112 IKIEQVRALLDFCGVGTHRGGARVVVLYPAE--ALNVAAANALLKTLEEPPPGTVFLLVSARI 172 (342)
T ss_pred cCHHHHHHHHHHhccCCccCCceEEEEechh--hcCHHHHHHHHHHhcCCCcCcEEEEEECCh
Confidence 4444444455566556677889999999999 456667778888876555555566655543
No 318
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.86 E-value=0.015 Score=60.73 Aligned_cols=51 Identities=27% Similarity=0.309 Sum_probs=34.0
Q ss_pred HHHHHHHH-HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHH
Q 048746 135 YRDELLQA-VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRV 186 (755)
Q Consensus 135 ~Q~~~l~~-i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~ 186 (755)
...+++.. +..+.+++++|+|||||||++-.++..... ...+++++....|
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~-~~~~iv~iEd~~E 166 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPP-EDERIVTIEDPPE 166 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHT-TTSEEEEEESSS-
T ss_pred HHHHHHhhccccceEEEEECCCccccchHHHHHhhhccc-cccceEEeccccc
Confidence 33344443 567899999999999999998776654322 1257777665554
No 319
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.83 E-value=0.06 Score=54.34 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=22.0
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcc-cCCCccccC
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGY-TKQGKVGCT 181 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~ilv~ 181 (755)
.-+++.||+|+|||.++-.+..+... .++.+|+++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~ 70 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL 70 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceee
Confidence 35899999999999765555443321 123456665
No 320
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.83 E-value=0.088 Score=57.87 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=30.4
Q ss_pred HHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccC
Q 048746 231 LLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSAT 284 (755)
Q Consensus 231 Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT 284 (755)
+.+.+...+...+++++||||+| + +.......+++.+.. +++..++++.||
T Consensus 105 l~~~~~~~p~~~~~kViiIDead-~-m~~~aanaLLk~LEe-p~~~~~fIL~a~ 155 (394)
T PRK07940 105 LVTIAARRPSTGRWRIVVIEDAD-R-LTERAANALLKAVEE-PPPRTVWLLCAP 155 (394)
T ss_pred HHHHHHhCcccCCcEEEEEechh-h-cCHHHHHHHHHHhhc-CCCCCeEEEEEC
Confidence 34444445566788999999999 4 344455566666544 333344444444
No 321
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.83 E-value=0.055 Score=62.24 Aligned_cols=48 Identities=29% Similarity=0.428 Sum_probs=28.0
Q ss_pred HHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEE
Q 048746 231 LLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLI 280 (755)
Q Consensus 231 Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il 280 (755)
|...+...+...++.+|||||+| .+..+....+++.+..-.+...+|+
T Consensus 107 L~~~~~~~p~~g~~kVIIIDEad--~Lt~~a~naLLk~LEEP~~~~ifIL 154 (624)
T PRK14959 107 LKEAIGYAPMEGRYKVFIIDEAH--MLTREAFNALLKTLEEPPARVTFVL 154 (624)
T ss_pred HHHHHHhhhhcCCceEEEEEChH--hCCHHHHHHHHHHhhccCCCEEEEE
Confidence 33333334456678999999999 4555555556665544333334444
No 322
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.83 E-value=0.04 Score=51.63 Aligned_cols=94 Identities=24% Similarity=0.362 Sum_probs=55.6
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCce
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTI 222 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~ 222 (755)
+..|+.+.+.||.||||||++-.+.-.. ....+.|.+-- + ..++|...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~~--~-------------------~~i~~~~~---------- 70 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGEL-EPDEGIVTWGS--T-------------------VKIGYFEQ---------- 70 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEECC--e-------------------EEEEEEcc----------
Confidence 4578999999999999998876553222 11223332211 0 12333221
Q ss_pred EEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhc
Q 048746 223 LKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKF 272 (755)
Q Consensus 223 I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~ 272 (755)
.+.|...+.......+.+-+++|+||.- ..++.+....+...+...
T Consensus 71 ---lS~G~~~rv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 71 ---LSGGEKMRLALAKLLLENPNLLLLDEPT-NHLDLESIEALEEALKEY 116 (144)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHc
Confidence 4455544443333345677899999997 778877666665555444
No 323
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.82 E-value=0.061 Score=64.00 Aligned_cols=104 Identities=22% Similarity=0.231 Sum_probs=66.8
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHH---HHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEe
Q 048746 132 IYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYL---HEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVG 208 (755)
Q Consensus 132 l~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l---~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg 208 (755)
+++-|.+++.. ....++|.|..|||||+.+-.-+ ....-....+|+++..|+.+|.++.+|+.+.+|..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~------ 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKG------ 73 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc------
Confidence 47788888765 45679999999999995544332 22111123489999999999999999998866521
Q ss_pred eeeeccccCCCCceEEEeCcHHHHHHHhCCC-C-CC-CCCceEeeccc
Q 048746 209 YSIRFEDCTSEKTILKYMTDGMLLREILSEP-N-LE-SYSVLMVDEAH 253 (755)
Q Consensus 209 ~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~-l~-~~~~vIiDEaH 253 (755)
....+.|.|-..|...+.... . +. .-.+-|+|+.+
T Consensus 74 ----------~~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~ 111 (664)
T TIGR01074 74 ----------EARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETD 111 (664)
T ss_pred ----------ccCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHH
Confidence 123577888776654443221 0 00 12245778776
No 324
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.72 E-value=0.11 Score=58.19 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=24.2
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcccCCCccccCc
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ 182 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 182 (755)
+.+++.||+|+|||+++-.+..... ..+.+++++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~-~~~~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR-ESGGKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEee
Confidence 4689999999999977665554432 2345677664
No 325
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.71 E-value=0.3 Score=52.36 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=38.0
Q ss_pred EEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 223 LKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 223 I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
|.|-.--.+.+.+...+.....+++|+|++| .++......+++.+....+...+|++|
T Consensus 93 I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~--~Ld~~a~naLLk~LEep~~~~~~Ilvt 150 (325)
T PRK08699 93 IKIDAVREIIDNVYLTSVRGGLRVILIHPAE--SMNLQAANSLLKVLEEPPPQVVFLLVS 150 (325)
T ss_pred cCHHHHHHHHHHHhhCcccCCceEEEEechh--hCCHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 3333333455555566677889999999999 677777777777665544444455543
No 326
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.69 E-value=0.053 Score=60.05 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=20.1
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
..+++|.||+|+|||+++-.++.+.
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3679999999999998877666543
No 327
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.62 E-value=0.085 Score=58.42 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=27.2
Q ss_pred HHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEE
Q 048746 232 LREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLI 280 (755)
Q Consensus 232 l~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il 280 (755)
...+...|...+..+|||||+| + +.......+++.+....+...+|+
T Consensus 116 ~~~~~~~p~~~~~kvvIIdea~-~-l~~~~~~~LLk~LEep~~~t~~Il 162 (397)
T PRK14955 116 RENVRYGPQKGRYRVYIIDEVH-M-LSIAAFNAFLKTLEEPPPHAIFIF 162 (397)
T ss_pred HHHHhhchhcCCeEEEEEeChh-h-CCHHHHHHHHHHHhcCCCCeEEEE
Confidence 3444455677889999999999 3 333334444555433333333443
No 328
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.57 E-value=0.038 Score=63.78 Aligned_cols=48 Identities=27% Similarity=0.434 Sum_probs=30.1
Q ss_pred HHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEE
Q 048746 231 LLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLI 280 (755)
Q Consensus 231 Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il 280 (755)
+...+...|...++.++||||+| ++..+....+++.+..-++...+|+
T Consensus 107 i~~~v~~~p~~~~~kViIIDE~~--~Lt~~a~naLLKtLEepp~~~ifIl 154 (559)
T PRK05563 107 IRDKVKYAPSEAKYKVYIIDEVH--MLSTGAFNALLKTLEEPPAHVIFIL 154 (559)
T ss_pred HHHHHhhCcccCCeEEEEEECcc--cCCHHHHHHHHHHhcCCCCCeEEEE
Confidence 33344445667889999999999 5566666666766544333333333
No 329
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.55 E-value=0.027 Score=60.50 Aligned_cols=44 Identities=27% Similarity=0.260 Sum_probs=32.0
Q ss_pred HHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHH
Q 048746 142 AVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVA 187 (755)
Q Consensus 142 ~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~l 187 (755)
++..+.+++++|+|||||||++-.++... ....+++++.-+.|+
T Consensus 156 ~v~~~~nili~G~tgSGKTTll~aL~~~i--p~~~ri~tiEd~~El 199 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTFTNAALREI--PAIERLITVEDAREI 199 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHHHHHHHhhC--CCCCeEEEecCCCcc
Confidence 36678999999999999999986655433 334577776555554
No 330
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.54 E-value=0.065 Score=57.15 Aligned_cols=53 Identities=17% Similarity=0.205 Sum_probs=36.8
Q ss_pred HHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccC
Q 048746 230 MLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSAT 284 (755)
Q Consensus 230 ~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT 284 (755)
.+.+.+...+....++++|||+|| .+.......++|.+..-+++.-+|+.|..
T Consensus 94 ~l~~~~~~~~~~g~~KV~iI~~a~--~m~~~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 94 EINEKVSQHAQQGGNKVVYIQGAE--RLTEAAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred HHHHHHhhccccCCceEEEEechh--hhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 344555556677889999999999 55666777888887665555555555543
No 331
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.52 E-value=0.088 Score=53.57 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=28.4
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCc
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ 182 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 182 (755)
+..+..+++.|++|||||++.-+++... ..++.+++++.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g~~~~yi~ 59 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGF-LQNGYSVSYVS 59 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEEe
Confidence 3457899999999999998887777654 22344566554
No 332
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.52 E-value=0.18 Score=59.09 Aligned_cols=51 Identities=24% Similarity=0.440 Sum_probs=32.7
Q ss_pred HHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 230 MLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 230 ~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
.+...+...|...++.++|||||| .+.......+++.+-.-++...+|+++
T Consensus 105 eLie~~~~~P~~g~~KV~IIDEa~--~LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 105 ELIENVKNLPTQSKYKIYIIDEVH--MLSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred HHHHHHHhchhcCCCEEEEEEChh--hCCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 344445555677889999999999 555566666666665444444444443
No 333
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.47 E-value=0.22 Score=56.69 Aligned_cols=43 Identities=26% Similarity=0.563 Sum_probs=32.1
Q ss_pred CCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 238 EPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 238 ~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
.|...++.++|||||| .+..+....+++.+..-++...+|+.+
T Consensus 112 ~P~~~~~KVvIIDEad--~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 112 KPSMARFKIFIIDEVH--MLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CcccCCeEEEEEECcc--cCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 4566789999999999 566677777777776666667777655
No 334
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=94.47 E-value=0.034 Score=66.19 Aligned_cols=117 Identities=19% Similarity=0.133 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHH---HHHHHhCCccccEEe
Q 048746 134 PYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAA---RVSQEMGVKLGHEVG 208 (755)
Q Consensus 134 ~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~---~~~~~~~~~~g~~vg 208 (755)
++-.+++-.+.-++--|.-..||=||| ..+|.++.. +...+.-+|+ ..--||.-=++ .+-..+|..+|....
T Consensus 170 ~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnA--L~GkgVHvVT-VNDYLA~RDaewmgply~fLGLsvg~i~~ 246 (1112)
T PRK12901 170 HYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNA--LTGNGVHVVT-VNDYLAKRDSEWMGPLYEFHGLSVDCIDK 246 (1112)
T ss_pred ccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHH--HcCCCcEEEE-echhhhhccHHHHHHHHHHhCCceeecCC
Confidence 444445555444455588999999999 344555543 3333333333 33445543333 333445665553322
Q ss_pred eeee-ccccCCCCceEEEeCcHHH-----HHHHhCC---CCCCCCCceEeeccc
Q 048746 209 YSIR-FEDCTSEKTILKYMTDGML-----LREILSE---PNLESYSVLMVDEAH 253 (755)
Q Consensus 209 ~~~~-~~~~~~~~~~I~v~T~g~L-----l~~l~~~---~~l~~~~~vIiDEaH 253 (755)
.... .+....-.++|+|+|..-| .+.+... .....+.+.||||||
T Consensus 247 ~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvD 300 (1112)
T PRK12901 247 HQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVD 300 (1112)
T ss_pred CCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechh
Confidence 1111 1112224789999998433 3333221 135668899999999
No 335
>PRK06620 hypothetical protein; Validated
Probab=94.45 E-value=0.15 Score=51.15 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=16.6
Q ss_pred CeEEEEccCCCchhccHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQY 166 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~ 166 (755)
+.+++.||+|||||+++-.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 56999999999999776543
No 336
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.43 E-value=0.14 Score=62.18 Aligned_cols=120 Identities=22% Similarity=0.257 Sum_probs=60.7
Q ss_pred eEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEEEeC
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMT 227 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~v~T 227 (755)
.+++.||||+|||.++-.+.... +.....++.+ ..-+. +-...+....|.+.| .+|| ..
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l-~~~~~~~~~~-dmse~--~~~~~~~~l~g~~~g-yvg~----------------~~ 656 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELL-YGGEQNLITI-NMSEF--QEAHTVSRLKGSPPG-YVGY----------------GE 656 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-hCCCcceEEE-eHHHh--hhhhhhccccCCCCC-cccc----------------cc
Confidence 58999999999996654432221 2222222222 21111 112233333444333 2332 12
Q ss_pred cHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcC----------CCcEEEEeccCCCHHHHHhhh
Q 048746 228 DGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFR----------SDLKLLISSATLDAEKFSDYF 294 (755)
Q Consensus 228 ~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~----------~~~~~il~SAT~~~~~l~~~~ 294 (755)
.|.|...+.. ..+++|+|||++ -.+.+....++..+..-+ -.-.+++||..+..+.+.+.+
T Consensus 657 ~g~L~~~v~~----~p~svvllDEie--ka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~ 727 (852)
T TIGR03345 657 GGVLTEAVRR----KPYSVVLLDEVE--KAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALC 727 (852)
T ss_pred cchHHHHHHh----CCCcEEEEechh--hcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhc
Confidence 3566666654 357899999998 445555444443332211 023567777777655555543
No 337
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.33 E-value=0.034 Score=62.27 Aligned_cols=87 Identities=22% Similarity=0.316 Sum_probs=53.9
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCce
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTI 222 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~ 222 (755)
+..+..+++.|++|+|||+++-+++.... ..+.+++++. ..+...|+..+.. .+|.....
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~~g~~vlYvs-~Ees~~qi~~ra~-rlg~~~~~----------------- 136 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLA-AAGGKVLYVS-GEESASQIKLRAE-RLGLPSDN----------------- 136 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEE-ccccHHHHHHHHH-HcCCChhc-----------------
Confidence 34578999999999999999988877653 2345777765 3445566665543 35443211
Q ss_pred EEEeCc---HHHHHHHhCCCCCCCCCceEeeccc
Q 048746 223 LKYMTD---GMLLREILSEPNLESYSVLMVDEAH 253 (755)
Q Consensus 223 I~v~T~---g~Ll~~l~~~~~l~~~~~vIiDEaH 253 (755)
+.+... ..++..+.. .+.++||||+++
T Consensus 137 l~~~~e~~l~~i~~~i~~----~~~~lVVIDSIq 166 (446)
T PRK11823 137 LYLLAETNLEAILATIEE----EKPDLVVIDSIQ 166 (446)
T ss_pred EEEeCCCCHHHHHHHHHh----hCCCEEEEechh
Confidence 222221 233333321 367899999998
No 338
>PRK04195 replication factor C large subunit; Provisional
Probab=94.29 E-value=0.16 Score=57.78 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=20.8
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+.+++.||+|+|||+++-.++.+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999998887666554
No 339
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.28 E-value=0.38 Score=54.50 Aligned_cols=49 Identities=27% Similarity=0.375 Sum_probs=30.7
Q ss_pred HHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEE
Q 048746 230 MLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLI 280 (755)
Q Consensus 230 ~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il 280 (755)
.+.+.+...|...++.++|||||| ++..+....+++.+...++...+|+
T Consensus 106 ~I~~~~~~~P~~~~~KVvIIDEad--~Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 106 ALRDAVSYTPIKGKYKVYIIDEAH--MLTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred HHHHHHHhCcccCCeeEEEEEChh--hcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 344444555677889999999999 5555555556666544434444444
No 340
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.25 E-value=0.089 Score=51.17 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=63.8
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccC--CCC
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCT--SEK 220 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~--~~~ 220 (755)
+..|+.+.+.||.||||||++-.+.-.. ....|.+.+-- ..+... ...+.. .++|........ +-.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g--~~~~~~-~~~~~~--------~i~~~~q~~~~~~~tv~ 92 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL-KPQQGEITLDG--VPVSDL-EKALSS--------LISVLNQRPYLFDTTLR 92 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCEEEECC--EEHHHH-HHHHHh--------hEEEEccCCeeecccHH
Confidence 4578999999999999998776554332 22234444321 111110 111111 122221100000 000
Q ss_pred ce-EEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEecc
Q 048746 221 TI-LKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSA 283 (755)
Q Consensus 221 ~~-I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SA 283 (755)
.. +.-.+.|...+.......+.+-+++|+||.- ..++......+...+.....+.-+|+.|-
T Consensus 93 ~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~~~tii~~sh 155 (178)
T cd03247 93 NNLGRRFSGGERQRLALARILLQDAPIVLLDEPT-VGLDPITERQLLSLIFEVLKDKTLIWITH 155 (178)
T ss_pred HhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 00 1122334443333333346677899999997 77887766666666655434444555443
No 341
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.24 E-value=0.061 Score=56.62 Aligned_cols=27 Identities=41% Similarity=0.603 Sum_probs=19.3
Q ss_pred CCeEEEEccCCCchhccHH---HHHHHhcc
Q 048746 146 YQVLVIVGETGSGKTTQIP---QYLHEAGY 172 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip---~~l~~~~~ 172 (755)
+..+++.||+|||||+++- ..++..+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 4579999999999996653 44444433
No 342
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.16 E-value=0.06 Score=59.54 Aligned_cols=41 Identities=32% Similarity=0.448 Sum_probs=30.5
Q ss_pred CCChHHHHHHHHHHHc--CCeEEEEccCCCchhccHHHHHHHh
Q 048746 130 LPIYPYRDELLQAVNE--YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~--~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+..++.+.+.+..+.+ +.-++++|||||||||.+-.++...
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~l 282 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSEL 282 (500)
T ss_pred hCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 4456667666666443 4689999999999998887777665
No 343
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.14 E-value=0.04 Score=43.03 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=19.0
Q ss_pred CCeEEEEccCCCchhccHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~ 168 (755)
+..+++.||+||||||++-.+..
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999988876543
No 344
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.14 E-value=0.25 Score=52.87 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=18.1
Q ss_pred CeEEEEccCCCchhccHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~ 169 (755)
..+++.||+|+|||+.+-.+...
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999777655443
No 345
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.10 E-value=0.034 Score=57.12 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=24.0
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccc
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVG 179 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~il 179 (755)
...-++|.|||||||||.+..++-.........|+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIl 158 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHIL 158 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceE
Confidence 35679999999999998777766544333333444
No 346
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.07 E-value=0.035 Score=55.12 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=24.1
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcccCCCccccCc
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ 182 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 182 (755)
..++++|||||||||.+-.++.......+++++.+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e 37 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence 358999999999998887655544322234555543
No 347
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.03 E-value=0.11 Score=50.12 Aligned_cols=126 Identities=18% Similarity=0.234 Sum_probs=63.0
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCc-cHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCC--
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ-PRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSE-- 219 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~-P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~-- 219 (755)
+..|..+.+.||.||||||++-.+.-... ...|.+.+-- +..... ...+.. .++|..........
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~~~~~~---~~~~~~--------~i~~~~~~~~~~~~t~ 92 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVDLRDLD---LESLRK--------NIAYVPQDPFLFSGTI 92 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhhhcC---HHHHHh--------hEEEEcCCchhccchH
Confidence 45789999999999999988766543322 2234443311 111100 011111 12222111000000
Q ss_pred CceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEecc
Q 048746 220 KTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSA 283 (755)
Q Consensus 220 ~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SA 283 (755)
.-.+ .+.|...+.........+-+++++||-= ..++......+.+.+........+|+.|-
T Consensus 93 ~e~l--LS~G~~~rl~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~~~tii~~sh 153 (171)
T cd03228 93 RENI--LSGGQRQRIAIARALLRDPPILILDEAT-SALDPETEALILEALRALAKGKTVIVIAH 153 (171)
T ss_pred HHHh--hCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 0001 3444433332222345567899999996 78887776666666665544444444433
No 348
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.01 E-value=0.11 Score=58.91 Aligned_cols=146 Identities=17% Similarity=0.207 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHc---------CCeEEEEccCCCchhccHHHHHH-Hhcc--cCCCccccCccHHHHHHHHHHHHHHHhCC
Q 048746 134 PYRDELLQAVNE---------YQVLVIVGETGSGKTTQIPQYLH-EAGY--TKQGKVGCTQPRRVAAMSVAARVSQEMGV 201 (755)
Q Consensus 134 ~~Q~~~l~~i~~---------~~~vii~apTGsGKT~~ip~~l~-~~~~--~~~~~ilv~~P~r~la~q~a~~~~~~~~~ 201 (755)
|+|.-++..+.. -+.+++.-|=|.|||+++..+.+ .... ..+..|+++++++.-|..+...+......
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 467777776542 24577777999999966654432 2211 23458999999999999998877765432
Q ss_pred cc--ccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCC---CCCCCCceEeecccccCCccchHHHHHHHHHhcCCCc
Q 048746 202 KL--GHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEP---NLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDL 276 (755)
Q Consensus 202 ~~--g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~---~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~ 276 (755)
.. ....+..+ .......|.+-..+..+..+..++ .=.+.+++|+||+|+ ...+-+...++.-...+++.
T Consensus 81 ~~~l~~~~~~~~----~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~--~~~~~~~~~l~~g~~~r~~p 154 (477)
T PF03354_consen 81 SPELRKRKKPKI----IKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHA--HKDDELYDALESGMGARPNP 154 (477)
T ss_pred Chhhccchhhhh----hhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCC--CCCHHHHHHHHhhhccCCCc
Confidence 11 10011000 001112233222222222222222 223568999999993 33332444444444455555
Q ss_pred EEEE-eccCC
Q 048746 277 KLLI-SSATL 285 (755)
Q Consensus 277 ~~il-~SAT~ 285 (755)
.++. .||..
T Consensus 155 l~~~ISTag~ 164 (477)
T PF03354_consen 155 LIIIISTAGD 164 (477)
T ss_pred eEEEEeCCCC
Confidence 5554 44554
No 349
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.96 E-value=0.23 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=18.5
Q ss_pred CeEEEEccCCCchhccHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~ 169 (755)
...|+.||+|+||||++-.+...
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999877655443
No 350
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.89 E-value=0.14 Score=54.95 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=33.5
Q ss_pred HHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEecc
Q 048746 231 LLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSA 283 (755)
Q Consensus 231 Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SA 283 (755)
+.+.....+....+.+||||||+ .+..+....+++.+....++..+|+.+-
T Consensus 97 ~~~~~~~~~~~~~~kviiidead--~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 97 LAEFLSESPLEGGYKVVIIDEAD--KLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred HHHHhccCCCCCCceEEEeCcHH--HHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 33333334445788999999999 5666777777776665555666666553
No 351
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.89 E-value=0.53 Score=51.25 Aligned_cols=49 Identities=27% Similarity=0.434 Sum_probs=29.5
Q ss_pred HHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEE
Q 048746 230 MLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLI 280 (755)
Q Consensus 230 ~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il 280 (755)
.+...+...+...+..+||||||| .+..+....+++.+...+++..+|+
T Consensus 104 ~l~~~~~~~p~~~~~~vviidea~--~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 104 EILDNVKYAPSSGKYKVYIIDEVH--MLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred HHHHHHhcCcccCCceEEEEeChh--hcCHHHHHHHHHHHhCCccceeEEE
Confidence 344555556677888999999999 3444445555555533333344444
No 352
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.23 Score=52.44 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=39.6
Q ss_pred ccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHH--HHcCCeEEEEccCCCchhccH
Q 048746 106 LHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQA--VNEYQVLVIVGETGSGKTTQI 163 (755)
Q Consensus 106 ~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~--i~~~~~vii~apTGsGKT~~i 163 (755)
|..+|++.+-.+..++.|.+. -.||+. +.+.+.. |..-+-|++.||+|+|||.++
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~-VELPL~--~PElF~~~GI~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREV-VELPLK--NPELFEELGIDPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCCChhhccCHHHHHHHHHHH-hccccc--CHHHHHHcCCCCCCceEeeCCCCCcHHHHH
Confidence 334677777777777777776 678875 4455555 455688999999999999444
No 353
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.83 E-value=0.098 Score=50.38 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=33.8
Q ss_pred EEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHH
Q 048746 149 LVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQ 197 (755)
Q Consensus 149 vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~ 197 (755)
++|.|++|||||+++-+++.. .+.+++++...+..-..+.+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHHHHHHHHH
Confidence 689999999999888888765 234778876666666666666655
No 354
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.69 E-value=0.14 Score=49.65 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=21.0
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||.||||||++-.++
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4578899999999999998886554
No 355
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.68 E-value=0.054 Score=59.01 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=52.5
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCce
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTI 222 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~ 222 (755)
+..+..+++.|++|+|||+++.+++..... .+.+++++.-. +...|+..+... ++.... .
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~E-Es~~qi~~Ra~r-lg~~~~-----------------~ 138 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGE-ESPEQIKLRADR-LGISTE-----------------N 138 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECC-cCHHHHHHHHHH-cCCCcc-----------------c
Confidence 445789999999999999999888766532 34577776432 334555544433 443221 1
Q ss_pred EEEe---CcHHHHHHHhCCCCCCCCCceEeeccc
Q 048746 223 LKYM---TDGMLLREILSEPNLESYSVLMVDEAH 253 (755)
Q Consensus 223 I~v~---T~g~Ll~~l~~~~~l~~~~~vIiDEaH 253 (755)
+.+. .-+.+.+.+.. .+.++||||+++
T Consensus 139 l~l~~e~~le~I~~~i~~----~~~~lVVIDSIq 168 (372)
T cd01121 139 LYLLAETNLEDILASIEE----LKPDLVIIDSIQ 168 (372)
T ss_pred EEEEccCcHHHHHHHHHh----cCCcEEEEcchH
Confidence 1111 12344444422 367899999998
No 356
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.64 E-value=0.053 Score=54.93 Aligned_cols=27 Identities=41% Similarity=0.373 Sum_probs=22.5
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
..++.+.|.||+|||||+++-+++...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 457899999999999998887776654
No 357
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.61 E-value=0.12 Score=50.22 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=55.1
Q ss_pred HHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCc
Q 048746 142 AVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKT 221 (755)
Q Consensus 142 ~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~ 221 (755)
.+..|..+.+.||.||||||++-.+.-.. ....+.|.+-- ..++|.....
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g----------------------~~i~~~~q~~------- 70 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQL-IPNGDNDEWDG----------------------ITPVYKPQYI------- 70 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCcEEEECC----------------------EEEEEEcccC-------
Confidence 34678999999999999998876554222 22334443311 1133321100
Q ss_pred eEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhc
Q 048746 222 ILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKF 272 (755)
Q Consensus 222 ~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~ 272 (755)
. .+-|.-.+.......+.+-+++++||-- ..++......+...+...
T Consensus 71 ~---LSgGq~qrv~laral~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~~ 117 (177)
T cd03222 71 D---LSGGELQRVAIAAALLRNATFYLFDEPS-AYLDIEQRLNAARAIRRL 117 (177)
T ss_pred C---CCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHH
Confidence 0 3334433332222345566899999997 677777666555555543
No 358
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.61 E-value=0.096 Score=53.46 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=17.1
Q ss_pred CeEEEEccCCCchhccHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l 167 (755)
.++++.||+|-||||++-.+.
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA 73 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIA 73 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHH
Confidence 579999999999998764443
No 359
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.60 E-value=0.092 Score=57.48 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=18.2
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
..++|.||+|+|||+++-.++.
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~ 62 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMK 62 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999977765554
No 360
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.55 E-value=0.19 Score=58.00 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=52.3
Q ss_pred CCCChHHHHHHHHHHHcC--CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHH-HHHHHHh
Q 048746 129 TLPIYPYRDELLQAVNEY--QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVA-ARVSQEM 199 (755)
Q Consensus 129 ~lPl~~~Q~~~l~~i~~~--~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a-~~~~~~~ 199 (755)
..-.+|+|.++++++... +.|+++.++-+|||.++-.++....-...+.+++++||..+|.... .++...+
T Consensus 14 ~~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 14 RTDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHH
Confidence 344689999999998665 6899999999999975554443332234468999999999999875 4555433
No 361
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.54 E-value=0.49 Score=50.48 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=38.9
Q ss_pred EEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccC
Q 048746 223 LKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSAT 284 (755)
Q Consensus 223 I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT 284 (755)
|.+-....+.+.+...+....++++|||+|| .++......++|.+.. +|+..+|++|..
T Consensus 104 I~id~ir~i~~~l~~~p~~~~~kVvII~~ae--~m~~~aaNaLLK~LEE-Pp~~~fILi~~~ 162 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLEAPRKVVVIEDAE--TMNEAAANALLKTLEE-PGNGTLILIAPS 162 (314)
T ss_pred CcHHHHHHHHHHHccCcccCCceEEEEEchh--hcCHHHHHHHHHHHhC-CCCCeEEEEECC
Confidence 3333334566666667777899999999999 4455566667777644 446666665543
No 362
>PTZ00293 thymidine kinase; Provisional
Probab=93.53 E-value=0.2 Score=49.67 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=28.8
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRR 185 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r 185 (755)
.|...++.||-+||||+.+...+..... .+.+++++-|..
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~-ag~kv~~~kp~~ 42 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTY-SEKKCVVIKYSK 42 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHH-cCCceEEEEecc
Confidence 4667899999999999877776655432 345677777753
No 363
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.52 E-value=0.18 Score=56.10 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=17.9
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
..+++.||+|+|||+++-.+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999987766543
No 364
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.52 E-value=0.33 Score=56.65 Aligned_cols=50 Identities=24% Similarity=0.393 Sum_probs=31.1
Q ss_pred HHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccC
Q 048746 232 LREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSAT 284 (755)
Q Consensus 232 l~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT 284 (755)
+..+...+...+++++||||+| .+..+....+++.+..-++...+| +.+|
T Consensus 110 i~~~~~~P~~~~~KVvIIdea~--~Ls~~a~naLLK~LEepp~~tifI-L~tt 159 (614)
T PRK14971 110 IEQVRIPPQIGKYKIYIIDEVH--MLSQAAFNAFLKTLEEPPSYAIFI-LATT 159 (614)
T ss_pred HHHHhhCcccCCcEEEEEECcc--cCCHHHHHHHHHHHhCCCCCeEEE-EEeC
Confidence 3344556778899999999999 445555555565555433444444 4444
No 365
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.47 E-value=0.067 Score=55.49 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=28.9
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCc
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ 182 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 182 (755)
..+..++|.|++|+|||++.-+++..... .+.+++++.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQAS-RGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEE
Confidence 35789999999999999988888776432 344666654
No 366
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.47 E-value=0.59 Score=49.01 Aligned_cols=127 Identities=20% Similarity=0.274 Sum_probs=68.3
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCcccc------CccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCC
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGC------TQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTS 218 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv------~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~ 218 (755)
+++.++++||-|||||+++-..+.+. ...+-+.++ ++--+.+...+++.++.++..- +...| .+ .
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~~-q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~g---sf----t 118 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSDI-QENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFG---SF----T 118 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhhH-HhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeec---cc----c
Confidence 45789999999999998888777662 111111111 1224555666666666654322 11122 00 0
Q ss_pred CCceEEEeCcHHHHHHHhCCCCCCCCC-ceEeecccccCCcc--chHHHHHHHHHhcCCCcEEEEeccCCCH
Q 048746 219 EKTILKYMTDGMLLREILSEPNLESYS-VLMVDEAHERTLST--DILFGLLKDLIKFRSDLKLLISSATLDA 287 (755)
Q Consensus 219 ~~~~I~v~T~g~Ll~~l~~~~~l~~~~-~vIiDEaHer~~~~--d~~~~~l~~~~~~~~~~~~il~SAT~~~ 287 (755)
+ +-..|+..+..+..-.... ++|+||+|-..... -.+..+.......+..+-++++|--+|.
T Consensus 119 e-------~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 119 E-------NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred h-------hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 0 1135555555554444443 56788998322222 2334444444445566777777777754
No 367
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.47 E-value=0.065 Score=60.95 Aligned_cols=57 Identities=16% Similarity=0.271 Sum_probs=40.9
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCc
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVK 202 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~ 202 (755)
+..+..+++.||+|+|||++..+++.... .++.+++++. .-+-..|+.++... +|..
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~-~~ge~~~y~s-~eEs~~~i~~~~~~-lg~~ 316 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENAC-ANKERAILFA-YEESRAQLLRNAYS-WGID 316 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEE-eeCCHHHHHHHHHH-cCCC
Confidence 34568999999999999999999988763 3344666654 55666777776644 5543
No 368
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.46 E-value=0.2 Score=58.22 Aligned_cols=48 Identities=25% Similarity=0.383 Sum_probs=29.3
Q ss_pred HHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 233 REILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 233 ~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
..+...|.+.+.++|||||+| .+...-...+++.+..-.+...+|+++
T Consensus 117 e~~~~~P~~~~~KVvIIdEad--~Lt~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 117 ENVRYGPQKGRYRVYIIDEVH--MLSTAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred HHHHhhhhcCCCEEEEEeChh--hcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 334445677889999999999 344444455555554433444555544
No 369
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.43 E-value=0.14 Score=53.90 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=20.1
Q ss_pred HHcC--CeEEEEccCCCchhccHHHHHH
Q 048746 143 VNEY--QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 143 i~~~--~~vii~apTGsGKT~~ip~~l~ 168 (755)
+.++ ..+|+.||+|+|||+++-.+..
T Consensus 157 ieq~~ipSmIlWGppG~GKTtlArlia~ 184 (554)
T KOG2028|consen 157 IEQNRIPSMILWGPPGTGKTTLARLIAS 184 (554)
T ss_pred HHcCCCCceEEecCCCCchHHHHHHHHh
Confidence 5555 4799999999999987765543
No 370
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.40 E-value=0.18 Score=59.78 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=18.2
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
..+++.||+|+|||+++-.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999987765553
No 371
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.18 Score=54.90 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=16.0
Q ss_pred CeEEEEccCCCchhccHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l 167 (755)
.++++.|+||+|||..+-..+
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~ 63 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVM 63 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHH
Confidence 469999999999995544433
No 372
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.16 Score=51.77 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=38.5
Q ss_pred ccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHH--HHcCCeEEEEccCCCchhccH
Q 048746 106 LHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQA--VNEYQVLVIVGETGSGKTTQI 163 (755)
Q Consensus 106 ~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~--i~~~~~vii~apTGsGKT~~i 163 (755)
|.++|.+.+-.++..+.|++. -+||++.. +..+. +..-+-||+.|++|+|||.++
T Consensus 180 P~Ety~diGGle~QiQEiKEs-vELPLthP--E~YeemGikpPKGVIlyG~PGTGKTLLA 236 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKES-VELPLTHP--EYYEEMGIKPPKGVILYGEPGTGKTLLA 236 (440)
T ss_pred chhhhcccccHHHHHHHHHHh-hcCCCCCH--HHHHHcCCCCCCeeEEeCCCCCchhHHH
Confidence 345677777777777888775 67887643 22222 455688999999999999443
No 373
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=93.38 E-value=0.19 Score=59.92 Aligned_cols=148 Identities=17% Similarity=0.160 Sum_probs=83.0
Q ss_pred ChHHHHHHHHHH----HcCCeEEEEccCCCchhccHHHHHHHhcccCC--CccccCccHHHHHHHHHHHHHHHh-CCccc
Q 048746 132 IYPYRDELLQAV----NEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQ--GKVGCTQPRRVAAMSVAARVSQEM-GVKLG 204 (755)
Q Consensus 132 l~~~Q~~~l~~i----~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~--~~ilv~~P~r~la~q~a~~~~~~~-~~~~g 204 (755)
+..||..-++.+ .++-+-|+.-+-|-|||.+...++......++ |-=||++||-.+..= .-.+++.. |.++-
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnW-EMElKRwcPglKIL 694 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNW-EMELKRWCPGLKIL 694 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhh-hHHHhhhCCcceEe
Confidence 467888877764 45678899999999999665544433322222 356777898765431 11232221 34443
Q ss_pred cEEeeee-----eccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEE
Q 048746 205 HEVGYSI-----RFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLL 279 (755)
Q Consensus 205 ~~vg~~~-----~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~i 279 (755)
...|..- |-.....+..++.|+....+++-+.. ..-.++.|+|+|||| +.-+ |-......++..+.. |.+
T Consensus 695 TYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A-FkrkrWqyLvLDEaq-nIKn--fksqrWQAllnfnsq-rRL 769 (1958)
T KOG0391|consen 695 TYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA-FKRKRWQYLVLDEAQ-NIKN--FKSQRWQALLNFNSQ-RRL 769 (1958)
T ss_pred eecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH-HHhhccceeehhhhh-hhcc--hhHHHHHHHhccchh-hee
Confidence 3344111 11112234567778777766654422 134578999999999 3322 333334444444443 446
Q ss_pred EeccCC
Q 048746 280 ISSATL 285 (755)
Q Consensus 280 l~SAT~ 285 (755)
+++.|+
T Consensus 770 LLtgTP 775 (1958)
T KOG0391|consen 770 LLTGTP 775 (1958)
T ss_pred eecCCc
Confidence 666775
No 374
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=93.37 E-value=0.22 Score=48.46 Aligned_cols=43 Identities=7% Similarity=0.125 Sum_probs=28.7
Q ss_pred CCCCCceEeecccccCCccchHHHHHHHHHhcCC-CcEEEEeccC
Q 048746 241 LESYSVLMVDEAHERTLSTDILFGLLKDLIKFRS-DLKLLISSAT 284 (755)
Q Consensus 241 l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~-~~~~il~SAT 284 (755)
+.+.+++++||.. ..++......+.+.+..... +..+|+.|--
T Consensus 114 ~~~p~llilDEp~-~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 114 IKPSPFYVLDEID-AALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 3567899999998 77887766666555554322 3566666543
No 375
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=93.22 E-value=0.19 Score=54.76 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=20.5
Q ss_pred HHHHcCCeEEEEccCCCchhccHHH
Q 048746 141 QAVNEYQVLVIVGETGSGKTTQIPQ 165 (755)
Q Consensus 141 ~~i~~~~~vii~apTGsGKT~~ip~ 165 (755)
+.+..+.+++..||+|+|||+++-.
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHH
Confidence 4567899999999999999955443
No 376
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.22 E-value=0.069 Score=60.01 Aligned_cols=50 Identities=28% Similarity=0.490 Sum_probs=39.1
Q ss_pred HHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 231 LLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 231 Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
+.+...-.|.-.++++.||||+| |+....+.+++|.+..-++.+.+|+.+
T Consensus 107 i~e~v~y~P~~~ryKVyiIDEvH--MLS~~afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 107 IIEKVNYAPSEGRYKVYIIDEVH--MLSKQAFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred HHHHhccCCccccceEEEEecHH--hhhHHHHHHHhcccccCccCeEEEEec
Confidence 44444555778899999999999 999999999999987766666666644
No 377
>PRK09087 hypothetical protein; Validated
Probab=93.21 E-value=0.21 Score=50.63 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=17.9
Q ss_pred CCeEEEEccCCCchhccHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l 167 (755)
++.+++.||+|||||+++-.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~ 65 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWR 65 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 5669999999999998776444
No 378
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.20 E-value=0.19 Score=60.40 Aligned_cols=103 Identities=18% Similarity=0.174 Sum_probs=65.9
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhccHHH-H--HHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEe
Q 048746 132 IYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQ-Y--LHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVG 208 (755)
Q Consensus 132 l~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~-~--l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg 208 (755)
+++-|.+++.. ....++|.|..|||||+.+-. + +....-....+|+++.-|+.+|.++.+|+.+.++..
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~~------ 76 (726)
T TIGR01073 5 LNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGPV------ 76 (726)
T ss_pred cCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhccc------
Confidence 68889998875 356789999999999954442 2 222211123489999999999999999998864421
Q ss_pred eeeeccccCCCCceEEEeCcHHHHHHHhCC-CC-C-CCCCceEeeccc
Q 048746 209 YSIRFEDCTSEKTILKYMTDGMLLREILSE-PN-L-ESYSVLMVDEAH 253 (755)
Q Consensus 209 ~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~-~~-l-~~~~~vIiDEaH 253 (755)
...+.++|-..+...+... .. + -.-.+-|+|+.+
T Consensus 77 -----------~~~~~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~ 113 (726)
T TIGR01073 77 -----------AEDIWISTFHSMCVRILRRDIDRIGINRNFSIIDPTD 113 (726)
T ss_pred -----------cCCcEEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHH
Confidence 1356788876554443221 11 1 012345778776
No 379
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.20 E-value=0.064 Score=58.10 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=28.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRV 186 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~ 186 (755)
.+..++++|||||||||.+-.++.......+++++.+.-..+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E 162 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIE 162 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChh
Confidence 467899999999999988876654432222345665543333
No 380
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.19 E-value=0.07 Score=56.87 Aligned_cols=42 Identities=29% Similarity=0.424 Sum_probs=29.2
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRV 186 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~ 186 (755)
+..+.+++++|||||||||++-.++... .+..+++++..+++
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~--~~~~~iv~ied~~E 182 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEI--PKDERIITIEDTRE 182 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccC--CccccEEEEcCccc
Confidence 6678999999999999999886555332 33345666544433
No 381
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.13 E-value=0.24 Score=54.86 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=69.5
Q ss_pred CeEEEEccCCCchhccHHHHHHHhccc--CCCccccCccHHH-HHHHHHHHHHHHhCCccccEEeeeeecc--c-c-CCC
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYT--KQGKVGCTQPRRV-AAMSVAARVSQEMGVKLGHEVGYSIRFE--D-C-TSE 219 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~~P~r~-la~q~a~~~~~~~~~~~g~~vg~~~~~~--~-~-~~~ 219 (755)
+..++.|..|||||+.+...+...... ++.+++|+-|+.- +...+...+...+.. .|...-+..... . . ...
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~-~g~~~~~~~~~~~~~i~~~~~ 80 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSI-EGINYEFKKSKSSMEIKILNT 80 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHH-cCChhheeecCCccEEEecCC
Confidence 467899999999996555444333233 5568999988876 556666666543321 111111111000 0 0 111
Q ss_pred CceEEEeCc-HHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCC
Q 048746 220 KTILKYMTD-GMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLD 286 (755)
Q Consensus 220 ~~~I~v~T~-g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~ 286 (755)
+..|++..- +---+ + .....+..+.+|||.+ +..+.+..++.++.. ......+++|.|++
T Consensus 81 g~~i~f~g~~d~~~~-i---k~~~~~~~~~idEa~~--~~~~~~~~l~~rlr~-~~~~~~i~~t~NP~ 141 (396)
T TIGR01547 81 GKKFIFKGLNDKPNK-L---KSGAGIAIIWFEEASQ--LTFEDIKELIPRLRE-TGGKKFIIFSSNPE 141 (396)
T ss_pred CeEEEeecccCChhH-h---hCcceeeeehhhhhhh--cCHHHHHHHHHHhhc-cCCccEEEEEcCcC
Confidence 344555332 11111 1 1233468999999994 344555555555322 12222578888883
No 382
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.11 E-value=0.34 Score=57.24 Aligned_cols=20 Identities=35% Similarity=0.610 Sum_probs=15.2
Q ss_pred eEEEEccCCCchhccHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l 167 (755)
.+.|.|+||+|||+.+-.++
T Consensus 783 vLYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35699999999996655443
No 383
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.08 E-value=0.12 Score=57.70 Aligned_cols=88 Identities=24% Similarity=0.317 Sum_probs=53.4
Q ss_pred CCccchHHHHHHHHHhcCCC-------ChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcc-----cCCCccc
Q 048746 112 DKSKEKSALEMLQEERKTLP-------IYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGY-----TKQGKVG 179 (755)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~lP-------l~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~-----~~~~~il 179 (755)
+....++.|...++....-- |-+-|.++|.. ..++.+||.|..||||||.+..-+.-..+ -..+.|+
T Consensus 186 d~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vl 264 (747)
T COG3973 186 DTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVL 264 (747)
T ss_pred CCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceE
Confidence 34455666655554433322 22334444433 46789999999999999876633222111 1233599
Q ss_pred cCccHHHHHHHHHHHHHHHhCC
Q 048746 180 CTQPRRVAAMSVAARVSQEMGV 201 (755)
Q Consensus 180 v~~P~r~la~q~a~~~~~~~~~ 201 (755)
++.|.|....-++.-+ -++|.
T Consensus 265 vl~PN~vFleYis~VL-PeLGe 285 (747)
T COG3973 265 VLGPNRVFLEYISRVL-PELGE 285 (747)
T ss_pred EEcCcHHHHHHHHHhc-hhhcc
Confidence 9999999988777443 33553
No 384
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.98 E-value=0.26 Score=58.44 Aligned_cols=77 Identities=13% Similarity=0.252 Sum_probs=62.3
Q ss_pred HHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcc
Q 048746 328 TVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIA 407 (755)
Q Consensus 328 ~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~ 407 (755)
.+..+.....++++++.+||..-+.++++.|.......+ .....+. +||.|+.++++.+++.+.+|..+|+|+|+..
T Consensus 115 ~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~--~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 115 LLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG--SLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcC--Ccceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 333444444568999999999999999999998876555 2345555 9999999999999999999999999999753
No 385
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.98 E-value=0.18 Score=54.29 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=32.2
Q ss_pred HHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 231 LLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 231 Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
+...+...+...+.+++|||||| .+.......+++.+..-+++..+|+.+
T Consensus 98 l~~~~~~~~~~~~~kvviI~~a~--~~~~~a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 98 LKEEFSKSGVESNKKVYIIEHAD--KMTASAANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred HHHHHhhCCcccCceEEEeehHh--hhCHHHHHHHHHHhcCCCCCceEEEEe
Confidence 33444445567788999999999 445556666677665544555555543
No 386
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.93 E-value=0.11 Score=55.82 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=38.6
Q ss_pred EEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEecc
Q 048746 223 LKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSA 283 (755)
Q Consensus 223 I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SA 283 (755)
|.|-.--.+.+.+...+....++++|||+|| .++......++|.+..=+++.-+|+.|.
T Consensus 88 I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae--~m~~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 88 LGVDAVREVTEKLYEHARLGGAKVVWLPDAA--LLTDAAANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEEcchH--hhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 3333334455556666777899999999999 4566667777777765444455555544
No 387
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=92.90 E-value=0.23 Score=46.08 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 133 YPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 133 ~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
...+.++-.....+..|++.|++||||+++ ..+++..
T Consensus 8 ~~l~~~l~~~a~~~~pvli~GE~GtGK~~~-A~~lh~~ 44 (138)
T PF14532_consen 8 RRLRRQLERLAKSSSPVLITGEPGTGKSLL-ARALHRY 44 (138)
T ss_dssp HHHHHHHHHHHCSSS-EEEECCTTSSHHHH-HHCCHHT
T ss_pred HHHHHHHHHHhCCCCcEEEEcCCCCCHHHH-HHHHHhh
Confidence 445555555666788999999999999964 4455544
No 388
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.87 E-value=0.1 Score=50.49 Aligned_cols=126 Identities=22% Similarity=0.294 Sum_probs=62.9
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCc-cHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCC--
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ-PRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSE-- 219 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~-P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~-- 219 (755)
+..|+.+.++||.||||||++-.+.-.. ....+.+.+-- +..... ..+. ..++|..........
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~----~~~~--------~~i~~~~q~~~~~~~~t 89 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLL-KPDSGEIKVLGKDIKKEP----EEVK--------RRIGYLPEEPSLYENLT 89 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcccch----Hhhh--------ccEEEEecCCccccCCc
Confidence 4578999999999999998776543221 12234443211 111000 0111 123332211110000
Q ss_pred -CceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCC-CcEEEEecc
Q 048746 220 -KTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRS-DLKLLISSA 283 (755)
Q Consensus 220 -~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~-~~~~il~SA 283 (755)
...+. .+.|...+.........+-+++++||-- ..++......+...+..... ...+|+.|-
T Consensus 90 v~~~~~-LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiii~th 153 (173)
T cd03230 90 VRENLK-LSGGMKQRLALAQALLHDPELLILDEPT-SGLDPESRREFWELLRELKKEGKTILLSSH 153 (173)
T ss_pred HHHHhh-cCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 00111 3445444433333345567899999997 78888776666666655432 344555443
No 389
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.86 E-value=0.44 Score=53.33 Aligned_cols=70 Identities=23% Similarity=0.232 Sum_probs=42.9
Q ss_pred CCCCceEEEeCcHHHHHHHhCCC-------CCCCCCce-EeecccccCCcc-----c------hHHHHHHHHHhcCCCcE
Q 048746 217 TSEKTILKYMTDGMLLREILSEP-------NLESYSVL-MVDEAHERTLST-----D------ILFGLLKDLIKFRSDLK 277 (755)
Q Consensus 217 ~~~~~~I~v~T~g~Ll~~l~~~~-------~l~~~~~v-IiDEaHer~~~~-----d------~~~~~l~~~~~~~~~~~ 277 (755)
.+....|.++|.+.|...+.... .+.+..+| +-||||.-...+ | -+...++......++--
T Consensus 78 hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~ 157 (812)
T COG3421 78 HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNL 157 (812)
T ss_pred cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCce
Confidence 44567899999988776664322 35555555 559999211111 1 12334444445667778
Q ss_pred EEEeccCCC
Q 048746 278 LLISSATLD 286 (755)
Q Consensus 278 ~il~SAT~~ 286 (755)
++.+|||.+
T Consensus 158 ~lef~at~~ 166 (812)
T COG3421 158 LLEFSATIP 166 (812)
T ss_pred eehhhhcCC
Confidence 889999994
No 390
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.85 E-value=0.46 Score=57.86 Aligned_cols=95 Identities=26% Similarity=0.348 Sum_probs=49.2
Q ss_pred eEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEEEeC
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMT 227 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~v~T 227 (755)
.++++||||+|||+++-. +....+..+...+.+ ...+.... ..+...+|.+.| .+||..
T Consensus 600 ~~Lf~Gp~G~GKT~lA~a-La~~l~~~~~~~i~i-d~se~~~~--~~~~~LiG~~pg-y~g~~~---------------- 658 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKA-LANFMFDSDDAMVRI-DMSEFMEK--HSVSRLVGAPPG-YVGYEE---------------- 658 (857)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHhhcCCCcEEEE-EhHHhhhh--hhHHHHhCCCCc-ccccch----------------
Confidence 689999999999976644 333323222223222 22222221 123444555443 333211
Q ss_pred cHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHH
Q 048746 228 DGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDL 269 (755)
Q Consensus 228 ~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~ 269 (755)
.|.|...+.. ..+++|+|||++ .++.+....++..+
T Consensus 659 ~g~l~~~v~~----~p~~vLllDEie--ka~~~v~~~Ll~il 694 (857)
T PRK10865 659 GGYLTEAVRR----RPYSVILLDEVE--KAHPDVFNILLQVL 694 (857)
T ss_pred hHHHHHHHHh----CCCCeEEEeehh--hCCHHHHHHHHHHH
Confidence 1233333322 346899999998 45555555555544
No 391
>PRK09354 recA recombinase A; Provisional
Probab=92.83 E-value=0.15 Score=54.72 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=31.9
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAA 188 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la 188 (755)
.+..+.|.||+|||||++..+++.... ..++.++++-.-..+-
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~-~~G~~~~yId~E~s~~ 101 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ-KAGGTAAFIDAEHALD 101 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEECCccchH
Confidence 578999999999999988888877653 3456777765544443
No 392
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.78 E-value=0.32 Score=53.30 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=18.0
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
+.+++.||+|+|||+.+-.+..
T Consensus 40 ~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999977766643
No 393
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.75 E-value=0.15 Score=54.27 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=31.7
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVA 187 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~l 187 (755)
+..+..+.|.||+|||||++.-+++.... ..++.++++-.-..+
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~-~~g~~v~yId~E~~~ 95 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQ-KAGGTAAFIDAEHAL 95 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEcccchh
Confidence 34678999999999999988887776653 335677776544433
No 394
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.67 E-value=0.14 Score=53.16 Aligned_cols=49 Identities=27% Similarity=0.396 Sum_probs=30.4
Q ss_pred hHHHHHHHHH-HH-cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCc
Q 048746 133 YPYRDELLQA-VN-EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ 182 (755)
Q Consensus 133 ~~~Q~~~l~~-i~-~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 182 (755)
.+.|.+.+.. +. .+..++++|||||||||++-.++.... ....+++.+.
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~-~~~~~iitiE 115 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN-TPEKNIITVE 115 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC-CCCCeEEEEC
Confidence 3445555544 43 346799999999999988876654432 1233455543
No 395
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=92.62 E-value=0.2 Score=58.76 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHH----cC-CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCc
Q 048746 133 YPYRDELLQAVN----EY-QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVK 202 (755)
Q Consensus 133 ~~~Q~~~l~~i~----~~-~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~ 202 (755)
...|..++..+. ++ +..++.|-||||||+.+..++... +..+||++|...+|.|++..++..++.+
T Consensus 11 ~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~~----~~p~Lvi~~n~~~A~ql~~el~~f~p~~ 81 (655)
T TIGR00631 11 AGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQV----NRPTLVIAHNKTLAAQLYNEFKEFFPEN 81 (655)
T ss_pred ChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHHHHhCCCC
Confidence 666766666643 33 356799999999998877766543 3468999999999999999998877654
No 396
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.56 E-value=0.11 Score=56.50 Aligned_cols=25 Identities=36% Similarity=0.618 Sum_probs=20.7
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+..++++|||||||||.+-.++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~ 157 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRE 157 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999888665543
No 397
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.52 E-value=0.048 Score=53.08 Aligned_cols=129 Identities=13% Similarity=0.147 Sum_probs=64.5
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCc-cHHHHHHHHHHHHHHHhCCccccEEeeeeeccccC---C
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ-PRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCT---S 218 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~-P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~---~ 218 (755)
+..|..+.+.||.||||||++-.+.-.. ....+.|.+-- +..... +....+.. .++|........ +
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~-~~~~~~~~--------~i~~~~q~~~~~~~~t 92 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILIDGEDLTDLE-DELPPLRR--------RIGMVFQDFALFPHLT 92 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccc-hhHHHHhh--------cEEEEecCCccCCCCC
Confidence 4578999999999999998876554222 12234444311 100000 00011111 122222111110 0
Q ss_pred CCceEEE-eCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCC--CcEEEEec
Q 048746 219 EKTILKY-MTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRS--DLKLLISS 282 (755)
Q Consensus 219 ~~~~I~v-~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~--~~~~il~S 282 (755)
-.-.+.+ .+.|...+.......+.+..++|+||-- ..++.+....+...+..... +..+|+.|
T Consensus 93 ~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tiii~s 158 (178)
T cd03229 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPT-SALDPITRREVRALLKSLQAQLGITVVLVT 158 (178)
T ss_pred HHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 0111222 5556555444333456677899999997 77887766666665555433 23444443
No 398
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.51 E-value=0.14 Score=49.01 Aligned_cols=116 Identities=17% Similarity=0.197 Sum_probs=62.3
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCc-cHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCc
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ-PRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKT 221 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~-P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~ 221 (755)
+..|..+.+.||.||||||++-.+.-.. ....+.+.+-- +.... ..... .. ..+||...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~~--~~~~~----~~----~~i~~~~q--------- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY-KPDSGEILVDGKEVSFA--SPRDA----RR----AGIAMVYQ--------- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCcC--CHHHH----Hh----cCeEEEEe---------
Confidence 4678999999999999998876554322 12233333211 10000 00000 00 11333221
Q ss_pred eEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcC-CCcEEEEecc
Q 048746 222 ILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFR-SDLKLLISSA 283 (755)
Q Consensus 222 ~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~-~~~~~il~SA 283 (755)
.+.|...+.......+.+-+++++||-- ..++......+...+.... ...-+|+.|-
T Consensus 83 ----LS~G~~qrl~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 140 (163)
T cd03216 83 ----LSVGERQMVEIARALARNARLLILDEPT-AALTPAEVERLFKVIRRLRAQGVAVIFISH 140 (163)
T ss_pred ----cCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4555554443333345667899999997 7788776666666655442 2344455443
No 399
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.50 E-value=0.16 Score=57.48 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=18.3
Q ss_pred cCCeEEEEccCCCchhccHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
..+.+++.||+|+|||+++-.+..
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~ 238 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVAN 238 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHH
Confidence 356799999999999976544443
No 400
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.46 E-value=0.22 Score=48.46 Aligned_cols=126 Identities=16% Similarity=0.226 Sum_probs=62.4
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCc------cHHHHHHHHH--HHHHHHhCCccccEEeeeeecc
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ------PRRVAAMSVA--ARVSQEMGVKLGHEVGYSIRFE 214 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~------P~r~la~q~a--~~~~~~~~~~~g~~vg~~~~~~ 214 (755)
+..|+.+.+.||.||||||++-.+.-.. ....|.|.+-- +.......+. -.+.+.++..-
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~----------- 89 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL-KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAH----------- 89 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHh-----------
Confidence 4578999999999999998776554322 12233333210 1111111111 01222222210
Q ss_pred ccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCC--CcEEEEeccC
Q 048746 215 DCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRS--DLKLLISSAT 284 (755)
Q Consensus 215 ~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~--~~~~il~SAT 284 (755)
. ....+.-.+.|.-.+.......+.+-+++++||.= ..++.+....+.+.+..... ...+|+.|--
T Consensus 90 -~--~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~-~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~ 157 (180)
T cd03214 90 -L--ADRPFNELSGGERQRVLLARALAQEPPILLLDEPT-SHLDIAHQIELLELLRRLARERGKTVVMVLHD 157 (180)
T ss_pred -H--hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 0 00112223444433333322345566899999997 77887766666555554332 3455554433
No 401
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.40 E-value=0.57 Score=52.51 Aligned_cols=152 Identities=11% Similarity=0.078 Sum_probs=84.5
Q ss_pred hcCCCChHHHHHHHHHHHc----------CCeEEEEccCCCchhccHHHHHHH---hcccCCCccccCccHHHHHHHHHH
Q 048746 127 RKTLPIYPYRDELLQAVNE----------YQVLVIVGETGSGKTTQIPQYLHE---AGYTKQGKVGCTQPRRVAAMSVAA 193 (755)
Q Consensus 127 ~~~lPl~~~Q~~~l~~i~~----------~~~vii~apTGsGKT~~ip~~l~~---~~~~~~~~ilv~~P~r~la~q~a~ 193 (755)
+...++.|+|.-++-++.. -+..+|.-|-|-|||+++..+..- .....+..+.+++|+.+=|.+.+.
T Consensus 57 ~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~ 136 (546)
T COG4626 57 GFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFN 136 (546)
T ss_pred CCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhH
Confidence 4667889999999999862 235788889999999887744322 122345589999999988877765
Q ss_pred HHHHHhCCccccEEeeeeeccccCCCCc-eEEEeCcHHHHHHHhCCC---CCCCCCceEeecccccCCccchHHHHHHHH
Q 048746 194 RVSQEMGVKLGHEVGYSIRFEDCTSEKT-ILKYMTDGMLLREILSEP---NLESYSVLMVDEAHERTLSTDILFGLLKDL 269 (755)
Q Consensus 194 ~~~~~~~~~~g~~vg~~~~~~~~~~~~~-~I~v~T~g~Ll~~l~~~~---~l~~~~~vIiDEaHer~~~~d~~~~~l~~~ 269 (755)
.++...-..- ..+......... .|.+.-....++.+..++ .-.+..+.|+||.|+..-..+ .....+.-
T Consensus 137 ~ar~mv~~~~------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~~-~~~~~~~g 209 (546)
T COG4626 137 PARDMVKRDD------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQED-MYSEAKGG 209 (546)
T ss_pred HHHHHHHhCc------chhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHHH-HHHHHHhh
Confidence 5544221110 000000011111 122221222223333332 334678999999994332222 22223333
Q ss_pred HhcCCCcEEEEeccCC
Q 048746 270 IKFRSDLKLLISSATL 285 (755)
Q Consensus 270 ~~~~~~~~~il~SAT~ 285 (755)
+..+++.+++..|-.-
T Consensus 210 ~~ar~~~l~~~ITT~g 225 (546)
T COG4626 210 LGARPEGLVVYITTSG 225 (546)
T ss_pred hccCcCceEEEEecCC
Confidence 3466777777777643
No 402
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.38 E-value=0.32 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=18.6
Q ss_pred CeEEEEccCCCchhccHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+.+++.||+|+|||+++-.+..+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHH
Confidence 57999999999999877655544
No 403
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.35 E-value=0.26 Score=56.76 Aligned_cols=44 Identities=27% Similarity=0.434 Sum_probs=27.9
Q ss_pred HhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEE
Q 048746 235 ILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLI 280 (755)
Q Consensus 235 l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il 280 (755)
+...|...++.++||||+| .+.......+++.+..-++...+|+
T Consensus 111 ~~~~p~~~~~KVvIIDEa~--~Ls~~a~naLLK~LEepp~~~vfI~ 154 (563)
T PRK06647 111 IMFPPASSRYRVYIIDEVH--MLSNSAFNALLKTIEEPPPYIVFIF 154 (563)
T ss_pred HHhchhcCCCEEEEEEChh--hcCHHHHHHHHHhhccCCCCEEEEE
Confidence 3445667889999999999 4555555566666544333344443
No 404
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=0.38 Score=53.16 Aligned_cols=107 Identities=23% Similarity=0.361 Sum_probs=63.0
Q ss_pred eEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEEEeC
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMT 227 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~v~T 227 (755)
.+++.||.|||||+++.++.....+ +.|=++.|....-.+=..+++..
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~F---PFvKiiSpe~miG~sEsaKc~~i----------------------------- 587 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDF---PFVKIISPEDMIGLSESAKCAHI----------------------------- 587 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCC---CeEEEeChHHccCccHHHHHHHH-----------------------------
Confidence 5899999999999988888776543 35556666644333222222221
Q ss_pred cHHHHHHHhCCCCCCCCCceEeecccccCCcc--------chHHHHHHHHHhcCC--CcEEEEeccCCCHHHHHh
Q 048746 228 DGMLLREILSEPNLESYSVLMVDEAHERTLST--------DILFGLLKDLIKFRS--DLKLLISSATLDAEKFSD 292 (755)
Q Consensus 228 ~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~--------d~~~~~l~~~~~~~~--~~~~il~SAT~~~~~l~~ 292 (755)
.....|..-+.+++||+|+.. |.++. ...++.+..+++..| +.|++++..|-..+.+.+
T Consensus 588 -----~k~F~DAYkS~lsiivvDdiE-rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~ 656 (744)
T KOG0741|consen 588 -----KKIFEDAYKSPLSIIVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQE 656 (744)
T ss_pred -----HHHHHHhhcCcceEEEEcchh-hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHH
Confidence 001112234567889999985 76653 234555555555433 457777777765554443
No 405
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=92.33 E-value=0.11 Score=55.87 Aligned_cols=53 Identities=28% Similarity=0.308 Sum_probs=37.7
Q ss_pred hHHHHHHHHH-HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHH
Q 048746 133 YPYRDELLQA-VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVA 187 (755)
Q Consensus 133 ~~~Q~~~l~~-i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~l 187 (755)
.+.+.+++.. +..+.+++++|+|||||||++-.++... ....+++++.-+.|+
T Consensus 164 ~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i--~~~~riv~iEd~~El 217 (340)
T TIGR03819 164 PPGVARLLRAIVAARLAFLISGGTGSGKTTLLSALLALV--APDERIVLVEDAAEL 217 (340)
T ss_pred CHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccC--CCCCcEEEECCccee
Confidence 3566666665 5667899999999999998886655432 234467777666665
No 406
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.33 E-value=0.6 Score=48.56 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=19.4
Q ss_pred CeEEEEccCCCchhccHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+++++.|||||||||++-.+.-.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~ 134 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARI 134 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCc
Confidence 68999999999999888766544
No 407
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.29 E-value=0.087 Score=53.92 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=39.4
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCc
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVK 202 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~ 202 (755)
..+..++|.||+|||||++.-+++.+.. ..+.+++++. +.+-..++.+++.. +|..
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs-~ee~~~~i~~~~~~-~g~~ 74 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVA-LEEHPVQVRRNMAQ-FGWD 74 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEE-eeCCHHHHHHHHHH-hCCC
Confidence 3578999999999999999988887753 3344666664 44555666666544 5543
No 408
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.29 E-value=0.43 Score=53.68 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=18.1
Q ss_pred CeEEEEccCCCchhccHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+.+|+.||+|+|||+.+-.+...
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 45899999999999877666543
No 409
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.29 E-value=0.081 Score=61.61 Aligned_cols=33 Identities=33% Similarity=0.603 Sum_probs=26.1
Q ss_pred HHHHHHHHHc---CCeEEEEccCCCchhccHHHHHH
Q 048746 136 RDELLQAVNE---YQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 136 Q~~~l~~i~~---~~~vii~apTGsGKT~~ip~~l~ 168 (755)
+..++..+.. .+-++++||-|+||||++.++..
T Consensus 24 R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~ 59 (894)
T COG2909 24 RPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRE 59 (894)
T ss_pred cHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH
Confidence 4455555544 47899999999999999999975
No 410
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.19 E-value=0.3 Score=51.95 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=17.6
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
+.+++.||+|+|||+++-.+..
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~ 52 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIAN 52 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999977655543
No 411
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.19 E-value=0.29 Score=60.56 Aligned_cols=26 Identities=35% Similarity=0.632 Sum_probs=22.5
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
...+.++|+||.|+||||++-+++..
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~~ 55 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAAG 55 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999998854
No 412
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.17 E-value=0.11 Score=50.33 Aligned_cols=128 Identities=18% Similarity=0.209 Sum_probs=63.0
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCC--C
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSE--K 220 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~--~ 220 (755)
+..|+.+.+.||.||||||++-.+.-.. ....+.+.+-- +.+...-...+.. .++|.......... .
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g--~~~~~~~~~~~~~--------~i~~~~q~~~~~~~tv~ 93 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL-RPTSGRVRLDG--ADISQWDPNELGD--------HVGYLPQDDELFSGSIA 93 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeEEECC--EEcccCCHHHHHh--------heEEECCCCccccCcHH
Confidence 4578999999999999998876554332 12234443311 0000000001111 12221111000000 0
Q ss_pred ceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcC-CCcEEEEeccC
Q 048746 221 TILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFR-SDLKLLISSAT 284 (755)
Q Consensus 221 ~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~-~~~~~il~SAT 284 (755)
-.+ .+.|...+.......+.+.+++++||.= ..++......+...+.... ....+|+.|--
T Consensus 94 ~~l--LS~G~~qrv~la~al~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~ 155 (173)
T cd03246 94 ENI--LSGGQRQRLGLARALYGNPRILVLDEPN-SHLDVEGERALNQAIAALKAAGATRIVIAHR 155 (173)
T ss_pred HHC--cCHHHHHHHHHHHHHhcCCCEEEEECCc-cccCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 001 3445444443333356677899999997 7788776666555555432 24445554443
No 413
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.16 E-value=0.28 Score=52.18 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=36.2
Q ss_pred HHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccC
Q 048746 230 MLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSAT 284 (755)
Q Consensus 230 ~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT 284 (755)
.+.+.+...+....++++|||+|| .++......++|.+..-+++.-+|+.|..
T Consensus 95 ~l~~~~~~~~~~~~~kV~iI~~ae--~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 95 QCNRLAQESSQLNGYRLFVIEPAD--AMNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred HHHHHHhhCcccCCceEEEecchh--hhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 344444555667889999999999 45666777788877665555556665544
No 414
>PHA00729 NTP-binding motif containing protein
Probab=92.15 E-value=0.16 Score=50.95 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=18.2
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
.++++.|++|+|||+++-.+..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999987766554
No 415
>PRK10436 hypothetical protein; Provisional
Probab=91.99 E-value=0.18 Score=56.51 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=26.0
Q ss_pred hHHHHHHHHH-H-HcCCeEEEEccCCCchhccHHHHHHH
Q 048746 133 YPYRDELLQA-V-NEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 133 ~~~Q~~~l~~-i-~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+.|.+.+.. + ..+..++++|||||||||.+-.++..
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~ 241 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQT 241 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHh
Confidence 4555555554 3 35678999999999999887655544
No 416
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=91.96 E-value=0.3 Score=47.10 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=30.6
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQ 197 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~ 197 (755)
..++|.|++|||||++.-.+.... +..++++......-.+..+|+..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~----~~~~~~iat~~~~~~e~~~ri~~ 48 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS----GLQVLYIATAQPFDDEMAARIAH 48 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc----CCCcEeCcCCCCChHHHHHHHHH
Confidence 368999999999998888776553 22455555444444455556544
No 417
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=91.87 E-value=0.72 Score=49.60 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 134 PYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 134 ~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
....++-.+...+..|+|.|++||||++++ .+++..
T Consensus 10 ~~~~~~~~~a~~~~pVLI~GE~GtGK~~lA-r~iH~~ 45 (329)
T TIGR02974 10 EVLEQVSRLAPLDRPVLIIGERGTGKELIA-ARLHYL 45 (329)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCChHHHHH-HHHHHh
Confidence 445555555667888999999999999654 445444
No 418
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=91.87 E-value=0.5 Score=56.23 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=67.0
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCC-cccccCcCCC
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATN-IAETSLTIDG 415 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-i~~~Gidip~ 415 (755)
.+.+++|.+||+.-+.+.++.+++.+... ++.+..+||+++..+|..+++...+|...|||+|. .+...+.+++
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~-----~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~ 383 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPL-----GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHN 383 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhc-----CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcc
Confidence 36789999999999999999988876432 37889999999999999999999999999999996 4455677888
Q ss_pred eeEEE
Q 048746 416 IKYVI 420 (755)
Q Consensus 416 v~~VI 420 (755)
+.+||
T Consensus 384 l~lvV 388 (681)
T PRK10917 384 LGLVI 388 (681)
T ss_pred cceEE
Confidence 88877
No 419
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=91.85 E-value=0.094 Score=55.18 Aligned_cols=24 Identities=42% Similarity=0.509 Sum_probs=20.8
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+.+.|.|+.|+|||+++-.++..
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCH
T ss_pred eEEEEEEcCCcCCcceeeeecccc
Confidence 578999999999999988877755
No 420
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=91.83 E-value=0.74 Score=50.09 Aligned_cols=127 Identities=17% Similarity=0.150 Sum_probs=53.2
Q ss_pred EEEccCCCchhccHHHHHHHhcccCC--CccccCccHHH-HHHHHHH---HHHHHhCCccccEEeeeeecccc--CCCCc
Q 048746 150 VIVGETGSGKTTQIPQYLHEAGYTKQ--GKVGCTQPRRV-AAMSVAA---RVSQEMGVKLGHEVGYSIRFEDC--TSEKT 221 (755)
Q Consensus 150 ii~apTGsGKT~~ip~~l~~~~~~~~--~~ilv~~P~r~-la~q~a~---~~~~~~~~~~g~~vg~~~~~~~~--~~~~~ 221 (755)
++.++.|+|||+.+...+........ ..+++. |+.. +...+.. .+...... .. ...+....+.. ...+.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~nG~ 77 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARDIFGRFWKGIIELLPS-WF-EIKFNEWNDRKIILPNGS 77 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TT-S--EEEE-SSEEEETTS-
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hc-CcccccCCCCcEEecCce
Confidence 57899999999776665444433333 355555 5554 4444333 22221121 11 11111001111 13445
Q ss_pred eEEEeCcHH--HHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 222 ILKYMTDGM--LLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 222 ~I~v~T~g~--Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
.|.+.+-+. -...+.+ ..+++|++||+- ....+.....+............++.|-|.
T Consensus 78 ~i~~~~~~~~~~~~~~~G----~~~~~i~iDE~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~p~ 137 (384)
T PF03237_consen 78 RIQFRGADSPDSGDNIRG----FEYDLIIIDEAA--KVPDDAFSELIRRLRATWGGSIRMYISTPP 137 (384)
T ss_dssp EEEEES-----SHHHHHT----S--SEEEEESGG--GSTTHHHHHHHHHHHHCSTT--EEEEEE--
T ss_pred EEEEeccccccccccccc----cccceeeeeecc--cCchHHHHHHHHhhhhcccCcceEEeecCC
Confidence 566665332 1222222 578899999986 333344444555554444444433555555
No 421
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.77 E-value=0.7 Score=50.27 Aligned_cols=131 Identities=26% Similarity=0.329 Sum_probs=79.2
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcccCCCc--cccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEE
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYTKQGK--VGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILK 224 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~--ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~ 224 (755)
.+++++|=-||||||....+...... .+.+ ++..=..|.+|..+.+.+++..+.++-.. ......+-
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~----------~~~~~Pv~ 169 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS----------GTEKDPVE 169 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCceecC----------CCCCCHHH
Confidence 56899999999999777655433222 2333 34445779999998889888776654211 11111111
Q ss_pred EeCcHHHHHHHhCCCCCCCCCceEeecccccC-CccchHHHHHHHHHhcCCCcEEEEeccCC--CHHHHHhhhC
Q 048746 225 YMTDGMLLREILSEPNLESYSVLMVDEAHERT-LSTDILFGLLKDLIKFRSDLKLLISSATL--DAEKFSDYFG 295 (755)
Q Consensus 225 v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~-~~~d~~~~~l~~~~~~~~~~~~il~SAT~--~~~~l~~~~~ 295 (755)
++..+ ........+++||||-|- |. ++.+....+..+-....|+--++++-|++ ++...++-|.
T Consensus 170 Iak~a------l~~ak~~~~DvvIvDTAG-Rl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~ 236 (451)
T COG0541 170 IAKAA------LEKAKEEGYDVVIVDTAG-RLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFN 236 (451)
T ss_pred HHHHH------HHHHHHcCCCEEEEeCCC-cccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHh
Confidence 22111 111234568999999997 65 44444444444444477888888888888 5555565554
No 422
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=91.77 E-value=0.17 Score=48.66 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=21.6
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
+..|+.+.+.||.||||||++-.+.-
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAG 49 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 46789999999999999988766543
No 423
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=91.73 E-value=0.14 Score=59.22 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=28.6
Q ss_pred CCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 240 NLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 240 ~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
.+++-+++|+||+- -.++.+....+.+.+....++.-+|+.|
T Consensus 485 ll~~~~iliLDE~T-SaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 485 LLADAPILLLDEPT-EHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred HhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 35666889999997 5677777777777776655555555443
No 424
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=91.72 E-value=0.23 Score=54.84 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=19.0
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+.+++.||+|+|||+++-.+..+
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHH
Confidence 467999999999999776655544
No 425
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.69 E-value=0.33 Score=58.30 Aligned_cols=61 Identities=16% Similarity=0.271 Sum_probs=34.6
Q ss_pred cccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHH--HHcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 107 HSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQA--VNEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 107 ~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~--i~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
..+|.+.+-.+...+.|.+. ..+|+ .++. .+.. +...+.+++.||+|||||+++-.+..+.
T Consensus 449 ~~~~~di~g~~~~k~~l~~~-v~~~~-~~~~-~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~ 511 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREA-VEWPL-KHPE-IFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES 511 (733)
T ss_pred ccchhhcccHHHHHHHHHHH-HHhhh-hCHH-HHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 34566666555555545443 22332 1111 2222 2234569999999999997776665554
No 426
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=91.67 E-value=0.71 Score=49.21 Aligned_cols=142 Identities=17% Similarity=0.180 Sum_probs=72.9
Q ss_pred CCCChHHHHHHHHHHHcCC------eEEEEccCCCchhccHHHHHHHhcccCCC--ccccCccHHHHHHHHHHHHHHHhC
Q 048746 129 TLPIYPYRDELLQAVNEYQ------VLVIVGETGSGKTTQIPQYLHEAGYTKQG--KVGCTQPRRVAAMSVAARVSQEMG 200 (755)
Q Consensus 129 ~lPl~~~Q~~~l~~i~~~~------~vii~apTGsGKT~~ip~~l~~~~~~~~~--~ilv~~P~r~la~q~a~~~~~~~~ 200 (755)
..|....|-..+..+..+. .+++.|.+|||||+++-+++...... .. .++=....+.+-.++...+. ..
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~-~vw~n~~ecft~~~lle~IL~~~~--~~ 83 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE-NVWLNCVECFTYAILLEKILNKSQ--LA 83 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc-ceeeehHHhccHHHHHHHHHHHhc--cC
Confidence 4677888888888876554 35899999999998888887655221 11 11112234556666665442 00
Q ss_pred CccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCC---CCCCCCceEeecccccCCccc--hHHHHHHHHHhcCCC
Q 048746 201 VKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEP---NLESYSVLMVDEAHERTLSTD--ILFGLLKDLIKFRSD 275 (755)
Q Consensus 201 ~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~---~l~~~~~vIiDEaHer~~~~d--~~~~~l~~~~~~~~~ 275 (755)
... |..+ ......+. -++..+..-+ ....--++|+|-|+ +.-+++ .+..+++--.-...+
T Consensus 84 d~d----g~~~-------~~~~en~~---d~i~~l~q~~~~t~~d~~~~liLDnad-~lrD~~a~ll~~l~~L~el~~~~ 148 (438)
T KOG2543|consen 84 DKD----GDKV-------EGDAENFS---DFIYLLVQWPAATNRDQKVFLILDNAD-ALRDMDAILLQCLFRLYELLNEP 148 (438)
T ss_pred CCc----hhhh-------hhHHHHHH---HHHHHHHhhHHhhccCceEEEEEcCHH-hhhccchHHHHHHHHHHHHhCCC
Confidence 000 0000 00001111 1122222211 22334579999999 333333 443433332223344
Q ss_pred cEEEEeccCCCHH
Q 048746 276 LKLLISSATLDAE 288 (755)
Q Consensus 276 ~~~il~SAT~~~~ 288 (755)
.-.|++|+++-..
T Consensus 149 ~i~iils~~~~e~ 161 (438)
T KOG2543|consen 149 TIVIILSAPSCEK 161 (438)
T ss_pred ceEEEEeccccHH
Confidence 5677889988444
No 427
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.66 E-value=0.08 Score=52.01 Aligned_cols=24 Identities=42% Similarity=0.653 Sum_probs=20.9
Q ss_pred HHcCCeEEEEccCCCchhccHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQY 166 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~ 166 (755)
+..|.+++++||.||||||++--+
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 568999999999999999887654
No 428
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=91.62 E-value=0.23 Score=62.96 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcc--cCCCccccCccHHHHHHHHHHHHHHHhC
Q 048746 132 IYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGY--TKQGKVGCTQPRRVAAMSVAARVSQEMG 200 (755)
Q Consensus 132 l~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~ilv~~P~r~la~q~a~~~~~~~~ 200 (755)
.++-|.++|. ..+++++|.|.-|||||+.+..-+..... ..-.++++++=|+.+|.++..|+.+.+.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 3678888887 36889999999999999665443322211 1123799999999999999999988664
No 429
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.60 E-value=0.86 Score=51.89 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=40.1
Q ss_pred cccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHH-HHcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 103 LDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQA-VNEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 103 ~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~-i~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+.+..+|++.+-.+++-..|++. -..|+ .+=..+... +..-+-|++.||+|||||+++-.+.-+.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~-V~~p~-~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~ 492 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQA-VEWPL-KHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA 492 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHH-Hhhhh-hchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh
Confidence 445556888888666665555543 23342 222222222 3455789999999999997765554443
No 430
>PF12846 AAA_10: AAA-like domain
Probab=91.27 E-value=0.13 Score=54.31 Aligned_cols=43 Identities=28% Similarity=0.352 Sum_probs=30.8
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAM 189 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~ 189 (755)
|++++++|+||||||+.+-.++... ...+..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~-~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQL-IRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-HHcCCCEEEEcCCchHHH
Confidence 5789999999999997777555443 444567777777655443
No 431
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.25 E-value=0.16 Score=55.37 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=25.2
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHhccc-CCCccccCc
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEAGYT-KQGKVGCTQ 182 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~ 182 (755)
..+..++++|||||||||.+-.++...... ...+++.+.
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiE 186 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYE 186 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 356689999999999998886654433211 223555543
No 432
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=91.21 E-value=0.71 Score=54.39 Aligned_cols=120 Identities=23% Similarity=0.276 Sum_probs=65.0
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEEEe
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYM 226 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~v~ 226 (755)
...++.||||.|||-++-++.... +.. ...++-.-.-+- +=...+++..|.+.| .|||..+
T Consensus 522 gsFlF~GPTGVGKTELAkaLA~~L-fg~-e~aliR~DMSEy--~EkHsVSrLIGaPPG-YVGyeeG-------------- 582 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKALAEAL-FGD-EQALIRIDMSEY--MEKHSVSRLIGAPPG-YVGYEEG-------------- 582 (786)
T ss_pred eEEEeeCCCcccHHHHHHHHHHHh-cCC-CccceeechHHH--HHHHHHHHHhCCCCC-Cceeccc--------------
Confidence 378999999999994443332221 211 133333333221 223356677787776 6776543
Q ss_pred CcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcC---CC-------cEEEEeccCCCHHHHHhh
Q 048746 227 TDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFR---SD-------LKLLISSATLDAEKFSDY 293 (755)
Q Consensus 227 T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~---~~-------~~~il~SAT~~~~~l~~~ 293 (755)
|.|...+... -|++|.+||+. -.+.|.+.-++..+-.-+ .. --+|+||.-+-.+.+.+.
T Consensus 583 --G~LTEaVRr~----PySViLlDEIE--KAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~ 651 (786)
T COG0542 583 --GQLTEAVRRK----PYSVILLDEIE--KAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRD 651 (786)
T ss_pred --cchhHhhhcC----CCeEEEechhh--hcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhh
Confidence 3444444443 38999999997 455665555554442211 00 135666666655544443
No 433
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=91.09 E-value=0.57 Score=45.48 Aligned_cols=89 Identities=24% Similarity=0.203 Sum_probs=50.1
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEEE
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKY 225 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~v 225 (755)
++-.+++||-.||||+-+.+.+..... .+.++++.-|..- .| ++. + .+.... .....-+.+
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~-~g~~v~vfkp~iD------~R----~~~--~-~V~Sr~-----G~~~~A~~i 64 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE-AGMKVLVFKPAID------TR----YGV--G-KVSSRI-----GLSSEAVVI 64 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH-cCCeEEEEecccc------cc----ccc--c-eeeecc-----CCcccceec
Confidence 456789999999999877666655432 2345666555321 01 110 0 111000 011123445
Q ss_pred eCcHHHHHHHhCCCCCCCCCceEeeccc
Q 048746 226 MTDGMLLREILSEPNLESYSVLMVDEAH 253 (755)
Q Consensus 226 ~T~g~Ll~~l~~~~~l~~~~~vIiDEaH 253 (755)
-.+.-+...+........+++|.||||+
T Consensus 65 ~~~~~i~~~i~~~~~~~~~~~v~IDEaQ 92 (201)
T COG1435 65 PSDTDIFDEIAALHEKPPVDCVLIDEAQ 92 (201)
T ss_pred CChHHHHHHHHhcccCCCcCEEEEehhH
Confidence 5666666776555444448999999999
No 434
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=91.04 E-value=0.9 Score=47.55 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=28.4
Q ss_pred CCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccC
Q 048746 240 NLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSAT 284 (755)
Q Consensus 240 ~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT 284 (755)
.+.+-+++|+||.= ..++......+...+.....+..+|+.|--
T Consensus 153 ll~~p~illlDEpt-s~LD~~~~~~l~~~l~~~~~~~tii~isH~ 196 (275)
T cd03289 153 VLSKAKILLLDEPS-AHLDPITYQVIRKTLKQAFADCTVILSEHR 196 (275)
T ss_pred HhcCCCEEEEECcc-ccCCHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 45566889999997 677777666666666554444444444443
No 435
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=91.03 E-value=2.3 Score=48.36 Aligned_cols=159 Identities=16% Similarity=0.101 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh-ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHH
Q 048746 117 KSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT-TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARV 195 (755)
Q Consensus 117 ~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT-~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~ 195 (755)
-..+..+.+.-+.+| .+-.+.+... +.+-.+..-|--.||| +++|.+.+....-.+-+|.+++..|-.+.-+.+++
T Consensus 176 a~r~~~~lk~~Fdi~--~~s~~~l~~F-KQkaTVFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI 252 (668)
T PHA03372 176 ANRVLEYLLHVFDIE--FLSESSLNIF-KQKATVFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEV 252 (668)
T ss_pred HHHHHHHHHHHcCCc--ccCHHHHHHh-hccceEEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHH
Confidence 344455555556666 3344555554 4456677779999999 66666644443334668999999999888776665
Q ss_pred HH----HhCCc-cccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHH
Q 048746 196 SQ----EMGVK-LGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLI 270 (755)
Q Consensus 196 ~~----~~~~~-~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~ 270 (755)
.. .++.+ +-..-|..+.+... ..++.++++|- .=.+...=.+++++++|||| -+..+.+..++--+.
T Consensus 253 ~~~lrrwF~~~~vi~~k~~tI~~s~p-g~Kst~~fasc-----~n~NsiRGQ~fnll~VDEA~--FI~~~a~~tilgfm~ 324 (668)
T PHA03372 253 EFRCRRMFPRKHTIENKDNVISIDHR-GAKSTALFASC-----YNTNSIRGQNFHLLLVDEAH--FIKKDAFNTILGFLA 324 (668)
T ss_pred HHHHhhhcCccceeeecCcEEEEecC-CCcceeeehhh-----ccCccccCCCCCEEEEehhh--ccCHHHHHHhhhhhc
Confidence 43 33322 10011111111111 11122222220 00011134578999999999 677777766666553
Q ss_pred hcCCCcEEEEeccCCCHH
Q 048746 271 KFRSDLKLLISSATLDAE 288 (755)
Q Consensus 271 ~~~~~~~~il~SAT~~~~ 288 (755)
. .+.|+|..|-|-..+
T Consensus 325 q--~~~KiIfISS~Nsg~ 340 (668)
T PHA03372 325 Q--NTTKIIFISSTNTTN 340 (668)
T ss_pred c--cCceEEEEeCCCCCC
Confidence 3 578999999886333
No 436
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=91.03 E-value=0.69 Score=49.47 Aligned_cols=46 Identities=9% Similarity=0.183 Sum_probs=29.6
Q ss_pred HhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 235 ILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 235 l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
+...|...+.+++|||+|| .++......+++.+..-+++..+|+.+
T Consensus 85 ~~~~p~~~~~kv~iI~~ad--~m~~~a~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 85 VNKKPYEGDKKVIIIYNSE--KMTEQAQNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred HhcCcccCCceEEEEechh--hcCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 3356677889999999999 345555666666665444444444433
No 437
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=90.97 E-value=0.18 Score=45.37 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=18.0
Q ss_pred eEEEEccCCCchhccHHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~ 169 (755)
.++|+|++||||||++-.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999887766544
No 438
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=90.94 E-value=1.1 Score=49.01 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=18.5
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+.+++.||+|+|||.++-.+...
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~ 136 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNE 136 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999665555433
No 439
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=90.92 E-value=0.53 Score=52.39 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=32.2
Q ss_pred CCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 241 LESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 241 l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
|.+-.++++||-- -+++..-...++..+.....+.-+|+.|=-+
T Consensus 490 L~dapl~lLDEPT-egLD~~TE~~vL~ll~~~~~~kTll~vTHrL 533 (573)
T COG4987 490 LHDAPLWLLDEPT-EGLDPITERQVLALLFEHAEGKTLLMVTHRL 533 (573)
T ss_pred HcCCCeEEecCCc-ccCChhhHHHHHHHHHHHhcCCeEEEEeccc
Confidence 5677889999997 5788777777777777666666666666544
No 440
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.88 E-value=0.23 Score=59.69 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=34.0
Q ss_pred ccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHH--HHcCCeEEEEccCCCchhccHHHHHHH
Q 048746 108 SELPDKSKEKSALEMLQEERKTLPIYPYRDELLQA--VNEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 108 ~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~--i~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+|++.+-.+...+.+.+. -.+|+. ..+.+.. +..++.+++.||+|||||+++-.+..+
T Consensus 175 ~~~~di~G~~~~~~~l~~~-i~~~~~--~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREM-VELPMK--HPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred CCHHHhcCHHHHHHHHHHH-HHHHhh--CHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 3555555555555555443 223321 1222222 345678999999999999776655443
No 441
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.80 E-value=0.27 Score=51.11 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHH
Q 048746 134 PYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 134 ~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
...+.++..+..+..+++.||+|+|||+++-.+..
T Consensus 9 ~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 9 RVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHH
Confidence 34456666778899999999999999977765543
No 442
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=90.78 E-value=0.3 Score=48.37 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=17.9
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
.++|+.||+|+||||.+-.+..
T Consensus 49 P~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHH
Confidence 5899999999999987655443
No 443
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=90.75 E-value=0.28 Score=56.88 Aligned_cols=38 Identities=26% Similarity=0.429 Sum_probs=26.0
Q ss_pred ChHHHHHHHHH-HH-cCCeEEEEccCCCchhccHHHHHHH
Q 048746 132 IYPYRDELLQA-VN-EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 132 l~~~Q~~~l~~-i~-~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+.+.|.+.+.. +. .+..++++|||||||||.+-.++..
T Consensus 300 ~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~ 339 (564)
T TIGR02538 300 FEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNI 339 (564)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHh
Confidence 34555555554 33 4578999999999999887555543
No 444
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=90.74 E-value=0.22 Score=44.97 Aligned_cols=46 Identities=26% Similarity=0.363 Sum_probs=28.7
Q ss_pred HHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHH
Q 048746 138 ELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVA 187 (755)
Q Consensus 138 ~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~l 187 (755)
.+...+..+..+++.|+-||||||++-.++...+.. --|..||=.+
T Consensus 7 ~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~----~~V~SPTF~l 52 (123)
T PF02367_consen 7 KLAQILKPGDVILLSGDLGAGKTTFVRGLARALGID----EEVTSPTFSL 52 (123)
T ss_dssp HHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT------S----TTTTS
T ss_pred HHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC----CCcCCCCeEE
Confidence 444556778899999999999998887766554322 2566676544
No 445
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.69 E-value=0.86 Score=44.29 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=36.7
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCC-----CccccCccHHHHHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQ-----GKVGCTQPRRVAAMSVA 192 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~-----~~ilv~~P~r~la~q~a 192 (755)
+..|+..-+.||.|+||||++..+........+ ++-+.-.|+++||..+.
T Consensus 24 i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 24 IPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred ecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 457899999999999999998876554433322 24456679999987654
No 446
>PRK05973 replicative DNA helicase; Provisional
Probab=90.69 E-value=0.17 Score=51.46 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHH
Q 048746 136 RDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQ 197 (755)
Q Consensus 136 Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~ 197 (755)
..++..-+..|..++|.|++|+|||++.-+++..... .+.+++++. .-+-..++.+++..
T Consensus 54 ~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfS-lEes~~~i~~R~~s 113 (237)
T PRK05973 54 AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFT-LEYTEQDVRDRLRA 113 (237)
T ss_pred HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEE-EeCCHHHHHHHHHH
Confidence 3445556778899999999999999988888876532 344566553 22334566666544
No 447
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=90.67 E-value=1.1 Score=51.52 Aligned_cols=109 Identities=19% Similarity=0.272 Sum_probs=61.9
Q ss_pred CCChHHHHHHHHHHH--------cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCC
Q 048746 130 LPIYPYRDELLQAVN--------EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGV 201 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~--------~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~ 201 (755)
.-+..+.+.+++.+. +|..+.++||+|.|||.+ +.++|+.+.+.|
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSL-------------------------gkSIA~al~Rkf-- 378 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSL-------------------------GKSIAKALGRKF-- 378 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhH-------------------------HHHHHHHhCCCE--
Confidence 345678888888652 467899999999999943 334443332211
Q ss_pred ccccEEeeeeeccccCCCCceEE-EeCcHHHHHHHhCCCCCCCCCceEeeccc--ccCCccchHHHHHHHH
Q 048746 202 KLGHEVGYSIRFEDCTSEKTILK-YMTDGMLLREILSEPNLESYSVLMVDEAH--ERTLSTDILFGLLKDL 269 (755)
Q Consensus 202 ~~g~~vg~~~~~~~~~~~~~~I~-v~T~g~Ll~~l~~~~~l~~~~~vIiDEaH--er~~~~d~~~~~l~~~ 269 (755)
+-..+| .++.+....+..+-. =+-||++++-|...... =-++++||+| ..+...|-..+++.-+
T Consensus 379 -vR~sLG-GvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~--NPv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 379 -VRISLG-GVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVK--NPVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred -EEEecC-ccccHHHhccccccccccCChHHHHHHHHhCCc--CCeEEeechhhccCCCCCChHHHHHhhc
Confidence 111122 333333322222222 34599999887543221 1368999999 3345566655555544
No 448
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=90.61 E-value=0.26 Score=55.88 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHHc--CCeEEEEccCCCchhccHHHHHHH
Q 048746 132 IYPYRDELLQAVNE--YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 132 l~~~Q~~~l~~i~~--~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+.+.|.+.+..+.. +..++++|||||||||.+-.++..
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~ 265 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSR 265 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhc
Confidence 45556666655433 357899999999999888655544
No 449
>PRK05580 primosome assembly protein PriA; Validated
Probab=90.58 E-value=0.48 Score=56.21 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=61.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCee
Q 048746 338 PGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIK 417 (755)
Q Consensus 338 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~ 417 (755)
++++||.+|+++-+.++.+.|++.+ +..+..+||+++..+|.+++.....|..+|||+|.-+- -+.+.++.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f--------g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~ 260 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF--------GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLG 260 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--------CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCC
Confidence 5789999999999999999998754 24688899999999999998888899999999997443 25567777
Q ss_pred EEE
Q 048746 418 YVI 420 (755)
Q Consensus 418 ~VI 420 (755)
+||
T Consensus 261 liV 263 (679)
T PRK05580 261 LII 263 (679)
T ss_pred EEE
Confidence 766
No 450
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.52 E-value=0.42 Score=57.03 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=16.4
Q ss_pred eEEEEccCCCchhccHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l 167 (755)
.++++||||+|||+++-.+.
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA 509 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLS 509 (758)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999997765443
No 451
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=90.52 E-value=0.23 Score=48.99 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=28.2
Q ss_pred CCCCCCceEeecccccCCccchHHHHHHHHHhcCC-CcEEEEecc
Q 048746 240 NLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRS-DLKLLISSA 283 (755)
Q Consensus 240 ~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~-~~~~il~SA 283 (755)
.+.+-+++++||.- ..++......+...+..... ..-+|+.|-
T Consensus 126 l~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 169 (194)
T cd03213 126 LVSNPSLLFLDEPT-SGLDSSSALQVMSLLRRLADTGRTIICSIH 169 (194)
T ss_pred HHcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 35567899999998 78888776666666655432 344444443
No 452
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=90.50 E-value=0.25 Score=53.20 Aligned_cols=38 Identities=24% Similarity=0.196 Sum_probs=26.8
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhccc-----CCCccccCc
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYT-----KQGKVGCTQ 182 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~-----~~~~ilv~~ 182 (755)
.+..+.|.||+|||||++.-+++...... .+++++|+-
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 45789999999999998777776544321 124677764
No 453
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=90.41 E-value=1.5 Score=51.75 Aligned_cols=123 Identities=18% Similarity=0.199 Sum_probs=88.0
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcc-------------cCCCCCceEEEeccCCCCHHHHHHHhCCCCCC----CcE
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRG-------------LGSKIAELIICPIYANLPTELQAKIFEPTPEG----ARK 399 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~-------------~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g----~~~ 399 (755)
-+.+.|||-.+......+..+|...... -|.=..+.....+.|+....+|.+....|.+- .+-
T Consensus 1141 IGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl 1220 (1567)
T KOG1015|consen 1141 IGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARL 1220 (1567)
T ss_pred hcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEE
Confidence 3678999999888777777766543210 01111234466789999999999998888543 245
Q ss_pred EEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCcccc
Q 048746 400 VVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYH 474 (755)
Q Consensus 400 vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~ 474 (755)
.||+|-+.+-|||+-+.+-||-+|. .|| |.--.+.+=|+=|-|...|-..|||......+
T Consensus 1221 ~LISTRAGsLGiNLvAANRVIIfDa----sWN-----------PSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmE 1280 (1567)
T KOG1015|consen 1221 FLISTRAGSLGINLVAANRVIIFDA----SWN-----------PSYDTQSIFRVYRFGQTKPVYIYRFIAQGTME 1280 (1567)
T ss_pred EEEeeccCccccceeecceEEEEec----ccC-----------CccchHHHHHHHhhcCcCceeehhhhhcccHH
Confidence 7999999999999999999987776 333 22233446677788888899999999876554
No 454
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.33 E-value=0.23 Score=52.85 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=33.3
Q ss_pred HHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHH
Q 048746 139 LLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRV 186 (755)
Q Consensus 139 ~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~ 186 (755)
++.++..+++++++|+|||||||++-.++..- .+..+++.+--+.+
T Consensus 136 L~~~ie~~~siii~G~t~sGKTt~lnall~~I--p~~~rivtIEdt~E 181 (312)
T COG0630 136 LWLAIEARKSIIICGGTASGKTTLLNALLDFI--PPEERIVTIEDTPE 181 (312)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHhC--CchhcEEEEecccc
Confidence 55668889999999999999998887666543 23346666544443
No 455
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.33 E-value=0.57 Score=56.26 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=15.8
Q ss_pred eEEEEccCCCchhccHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l 167 (755)
.++++||||+|||+++-.+.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la 505 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLA 505 (731)
T ss_pred eEEEECCCCccHHHHHHHHH
Confidence 57999999999996655443
No 456
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=90.32 E-value=0.46 Score=49.38 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=43.2
Q ss_pred HHHHHHHHH-HHcCCeEEEEccCCCchhccHHHHHHHh-------c--ccCCCccccCc--cHHHHHHHHHHHHHHHhCC
Q 048746 134 PYRDELLQA-VNEYQVLVIVGETGSGKTTQIPQYLHEA-------G--YTKQGKVGCTQ--PRRVAAMSVAARVSQEMGV 201 (755)
Q Consensus 134 ~~Q~~~l~~-i~~~~~vii~apTGsGKT~~ip~~l~~~-------~--~~~~~~ilv~~--P~r~la~q~a~~~~~~~~~ 201 (755)
..+.+.|+- +.++-.+++.|+.|.||||++..++... + ....++++++. -.|+-+..-.+.+.+.+|.
T Consensus 76 s~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgL 155 (402)
T COG3598 76 SNSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGL 155 (402)
T ss_pred ccChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCC
Confidence 446677777 4566677888999999997766554322 1 12335666653 3344444445556666776
Q ss_pred ccc
Q 048746 202 KLG 204 (755)
Q Consensus 202 ~~g 204 (755)
..+
T Consensus 156 sPa 158 (402)
T COG3598 156 SPA 158 (402)
T ss_pred ChH
Confidence 654
No 457
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=90.27 E-value=0.15 Score=51.11 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.7
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.|+||+||||||++-.+-
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 5689999999999999999887654
No 458
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=90.24 E-value=0.58 Score=51.09 Aligned_cols=54 Identities=9% Similarity=0.189 Sum_probs=37.5
Q ss_pred CCceEeecccccCCccchHHHHHHHHHh---cCCCcEEEEeccCC-CHHHHHhhhCCC
Q 048746 244 YSVLMVDEAHERTLSTDILFGLLKDLIK---FRSDLKLLISSATL-DAEKFSDYFGSA 297 (755)
Q Consensus 244 ~~~vIiDEaHer~~~~d~~~~~l~~~~~---~~~~~~~il~SAT~-~~~~l~~~~~~~ 297 (755)
.-+||||-+..+.-..+++...+..... ...-..+|++|... ..+.+++.+.+.
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~ 206 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNR 206 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCC
Confidence 5689999998666666676665554433 34567899999888 556677776543
No 459
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.20 E-value=0.2 Score=50.45 Aligned_cols=39 Identities=26% Similarity=0.427 Sum_probs=26.1
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccC
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT 181 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 181 (755)
+.+..-+|++|+|||||||.+..++-.......+.|+-+
T Consensus 124 ~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTI 162 (375)
T COG5008 124 LAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITI 162 (375)
T ss_pred cccCceEEEECCCCCCchhhHHHHhcccccCCCCceEEe
Confidence 456678999999999999777766544333333444443
No 460
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=90.14 E-value=0.21 Score=46.24 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=19.0
Q ss_pred eEEEEccCCCchhccHHHHHHHh
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.++++|++||||||++-.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 47999999999999987776444
No 461
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=90.12 E-value=0.3 Score=51.98 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=27.3
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhccc-----CCCccccCc
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYT-----KQGKVGCTQ 182 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~-----~~~~ilv~~ 182 (755)
.+..+.+.||+|||||++.-+++...... .+++++|+-
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 46889999999999998877776544322 234777764
No 462
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=90.12 E-value=0.1 Score=58.14 Aligned_cols=46 Identities=28% Similarity=0.304 Sum_probs=34.9
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAM 189 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~ 189 (755)
-...+++++.|+||||||+.++.++... ...+.+++|+-|..++..
T Consensus 39 ~~~~~h~~i~g~tGsGKt~~i~~l~~~~-~~~~~~~vi~D~kg~~~~ 84 (410)
T cd01127 39 DAEEAHTMIIGTTGTGKTTQIRELLASI-RARGDRAIIYDPNGGFVS 84 (410)
T ss_pred chhhccEEEEcCCCCCHHHHHHHHHHHH-HhcCCCEEEEeCCcchhH
Confidence 3456799999999999998888776553 334568899888877543
No 463
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.01 E-value=0.39 Score=46.82 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=33.4
Q ss_pred eCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcC-CCcEEEEecc
Q 048746 226 MTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFR-SDLKLLISSA 283 (755)
Q Consensus 226 ~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~-~~~~~il~SA 283 (755)
.+.|.-.+.......+.+-+++++||-- ..++......+.+.+.... ....+|+.|-
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 162 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPT-RGVDVGAKAEIYRLIRELADAGKAVLLISS 162 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3444443333333356677899999997 6788776666666555432 2444455444
No 464
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.00 E-value=1.6 Score=53.30 Aligned_cols=119 Identities=24% Similarity=0.329 Sum_probs=58.5
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEEEe
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYM 226 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~v~ 226 (755)
..+++.||||+|||+++-.+. ......+..++.+ ..-+... ...+....|.+.| .+||.
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La-~~l~~~~~~~i~~-d~s~~~~--~~~~~~l~g~~~g-~~g~~---------------- 654 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALA-EFLFDDEDAMVRI-DMSEYME--KHSVARLIGAPPG-YVGYE---------------- 654 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHhcCCCCcEEEE-echhhcc--cchHHHhcCCCCC-ccCcc----------------
Confidence 358999999999996654443 3222222222221 1111111 1122333444332 23321
Q ss_pred CcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcC--------CCc--EEEEeccCCCHHHHHh
Q 048746 227 TDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFR--------SDL--KLLISSATLDAEKFSD 292 (755)
Q Consensus 227 T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~--------~~~--~~il~SAT~~~~~l~~ 292 (755)
..|.|...+... .+++|++||++ -.+.+....++..+..-+ -+. .+|+||..+..+.+.+
T Consensus 655 ~~g~l~~~v~~~----p~~vlllDeie--ka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~ 724 (852)
T TIGR03346 655 EGGQLTEAVRRK----PYSVVLFDEVE--KAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQE 724 (852)
T ss_pred cccHHHHHHHcC----CCcEEEEeccc--cCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhh
Confidence 124455544433 35799999998 456666655555543211 011 3556666665554444
No 465
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.98 E-value=0.53 Score=57.28 Aligned_cols=36 Identities=31% Similarity=0.413 Sum_probs=22.6
Q ss_pred HHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHH
Q 048746 229 GMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLI 270 (755)
Q Consensus 229 g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~ 270 (755)
|.|...+... .+++|++||+| -.+.+....+++.+-
T Consensus 601 ~~l~~~~~~~----p~~VvllDeie--ka~~~v~~~Llq~le 636 (821)
T CHL00095 601 GQLTEAVRKK----PYTVVLFDEIE--KAHPDIFNLLLQILD 636 (821)
T ss_pred chHHHHHHhC----CCeEEEECChh--hCCHHHHHHHHHHhc
Confidence 3455555433 35899999999 456666655555543
No 466
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=89.97 E-value=0.33 Score=52.06 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=22.8
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
..+..+.|+||+|||||++.-+++...
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 357899999999999998888887664
No 467
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=89.96 E-value=0.17 Score=51.84 Aligned_cols=50 Identities=22% Similarity=0.191 Sum_probs=33.8
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCC-----CccccCccHHHHHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQ-----GKVGCTQPRRVAAMSVA 192 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~-----~~ilv~~P~r~la~q~a 192 (755)
+..|+.+.+.||.||||||++-.+.-......+ ++-+--.|++++|..++
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 457899999999999999987665433221111 24455567777776654
No 468
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.86 E-value=1.4 Score=50.64 Aligned_cols=72 Identities=21% Similarity=0.391 Sum_probs=59.6
Q ss_pred EEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCC-----ccccc-CcCC
Q 048746 341 ILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATN-----IAETS-LTID 414 (755)
Q Consensus 341 iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-----i~~~G-idip 414 (755)
.||++||++-+.++++.+.......+ ++.++.++||++...|...++. | .+|||||+ .+.++ +++.
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~----~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~ 173 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLG----GLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLS 173 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcC----CccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchh
Confidence 99999999999999999988764322 4679999999999988877765 5 89999997 45555 8888
Q ss_pred CeeEEE
Q 048746 415 GIKYVI 420 (755)
Q Consensus 415 ~v~~VI 420 (755)
.+.++|
T Consensus 174 ~v~~lV 179 (513)
T COG0513 174 GVETLV 179 (513)
T ss_pred hcCEEE
Confidence 998877
No 469
>CHL00176 ftsH cell division protein; Validated
Probab=89.85 E-value=0.8 Score=53.61 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=19.8
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+.+++.||+|+|||+++-.+..+.
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999998776665543
No 470
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=89.84 E-value=0.33 Score=44.57 Aligned_cols=45 Identities=24% Similarity=0.365 Sum_probs=31.4
Q ss_pred HHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHH
Q 048746 140 LQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAA 188 (755)
Q Consensus 140 l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la 188 (755)
...+..+..+++.|+.|+||||++-.++...+. .--|..||=.++
T Consensus 16 ~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~----~~~v~SPTf~lv 60 (133)
T TIGR00150 16 AKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI----QGNVTSPTFTLV 60 (133)
T ss_pred HHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC----CCcccCCCeeee
Confidence 334556889999999999999888776655432 224667875443
No 471
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=89.71 E-value=0.36 Score=60.66 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=44.2
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccC----CCccccCccHHHHHHHHHHHHHHHhC
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTK----QGKVGCTQPRRVAAMSVAARVSQEMG 200 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~----~~~ilv~~P~r~la~q~a~~~~~~~~ 200 (755)
...+++++|.|..|||||+.+...+....... -..|+|+..|+++|.++..|+.+.+.
T Consensus 13 ~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~ 74 (1139)
T COG1074 13 SPPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLK 74 (1139)
T ss_pred cCCCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHHH
Confidence 34578999999999999976665544433332 23899999999999999998877553
No 472
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=89.69 E-value=1.2 Score=42.45 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=26.8
Q ss_pred CCCCceEeecccccCCccchHHHHHHHHHhcCC-CcEEEEeccCCCHH
Q 048746 242 ESYSVLMVDEAHERTLSTDILFGLLKDLIKFRS-DLKLLISSATLDAE 288 (755)
Q Consensus 242 ~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~-~~~~il~SAT~~~~ 288 (755)
.+-+++++||.- +.++......+...+..... ...+|+ +|-+.+
T Consensus 98 ~~~~llllDEp~-~gld~~~~~~l~~~l~~~~~~~~~vii--~TH~~~ 142 (162)
T cd03227 98 KPRPLYILDEID-RGLDPRDGQALAEAILEHLVKGAQVIV--ITHLPE 142 (162)
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEE--EcCCHH
Confidence 366899999997 78887655555555544322 344444 454444
No 473
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=89.64 E-value=0.29 Score=51.76 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=30.3
Q ss_pred CCCCCCceEeecccccCCccchHHHHHHHHHhcCCCc-EEEEecc
Q 048746 240 NLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDL-KLLISSA 283 (755)
Q Consensus 240 ~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~-~~il~SA 283 (755)
.+.+-+++|+||-= .+++......+...+......- ..|++|-
T Consensus 151 L~~~P~lliLDEPt-~GLDp~~~~~~~~~l~~l~~~g~~tvliss 194 (293)
T COG1131 151 LLHDPELLILDEPT-SGLDPESRREIWELLRELAKEGGVTILLST 194 (293)
T ss_pred HhcCCCEEEECCCC-cCCCHHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 45667899999997 7888877777777776655443 4555554
No 474
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.59 E-value=1.1 Score=50.62 Aligned_cols=153 Identities=19% Similarity=0.163 Sum_probs=0.0
Q ss_pred ccchhhhhhccccCCCCcccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHH-HHcCCeEEEEccCCCchhccHH
Q 048746 86 FEDKIDFIRDSVIDGENLDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQA-VNEYQVLVIVGETGSGKTTQIP 164 (755)
Q Consensus 86 ~~~~~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~-i~~~~~vii~apTGsGKT~~ip 164 (755)
|.+.....+...--..-...|-.+|.+.+-...+...|... ---| -..+...-.. +..-.-++++||+|||||.++-
T Consensus 486 F~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~a-I~~P-iK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAK 563 (802)
T KOG0733|consen 486 FEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMA-ILAP-IKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAK 563 (802)
T ss_pred HHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHH-Hhhh-ccCHHHHHHhCCCCCCceEEeCCCCccHHHHHH
Q ss_pred HHHHHhccc----CCC--ccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCC
Q 048746 165 QYLHEAGYT----KQG--KVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSE 238 (755)
Q Consensus 165 ~~l~~~~~~----~~~--~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~ 238 (755)
....+.+.. +++ .-.|+=-.--++.|++.|...
T Consensus 564 AVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~----------------------------------------- 602 (802)
T KOG0733|consen 564 AVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARA----------------------------------------- 602 (802)
T ss_pred HHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhc-----------------------------------------
Q ss_pred CCCCCCCceEeeccc---------ccCCccchHHHHHHHHHhcCCCcEEEEeccC
Q 048746 239 PNLESYSVLMVDEAH---------ERTLSTDILFGLLKDLIKFRSDLKLLISSAT 284 (755)
Q Consensus 239 ~~l~~~~~vIiDEaH---------er~~~~d~~~~~l~~~~~~~~~~~~il~SAT 284 (755)
+.-.+|.+||+| +-.........++..+-.......+.++-||
T Consensus 603 ---saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaAT 654 (802)
T KOG0733|consen 603 ---SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAAT 654 (802)
T ss_pred ---CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeec
No 475
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=89.59 E-value=1.8 Score=49.79 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=61.5
Q ss_pred CCChHHHHHHHHHHH--------cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHh-C
Q 048746 130 LPIYPYRDELLQAVN--------EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEM-G 200 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~--------~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~-~ 200 (755)
.-+..+.+.+++.|. +|+.+.++||+|-|||.+. .++|+.+.++| .
T Consensus 414 Ygm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~-------------------------kSIA~ALnRkFfR 468 (906)
T KOG2004|consen 414 YGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA-------------------------KSIARALNRKFFR 468 (906)
T ss_pred cchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH-------------------------HHHHHHhCCceEE
Confidence 345688888888763 5789999999999999442 23333322221 2
Q ss_pred CccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeeccc--ccCCccchHHHHHHHH
Q 048746 201 VKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAH--ERTLSTDILFGLLKDL 269 (755)
Q Consensus 201 ~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaH--er~~~~d~~~~~l~~~ 269 (755)
..+|.. ...........--+=+-||.+.+.|..-.. .--++.|||+| .++...|-..+++.-+
T Consensus 469 fSvGG~----tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t--~NPliLiDEvDKlG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 469 FSVGGM----TDVAEIKGHRRTYVGAMPGKIIQCLKKVKT--ENPLILIDEVDKLGSGHQGDPASALLELL 533 (906)
T ss_pred Eecccc----ccHHhhcccceeeeccCChHHHHHHHhhCC--CCceEEeehhhhhCCCCCCChHHHHHHhc
Confidence 222211 111111111122233569999998753221 11368999999 4556677665555544
No 476
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.57 E-value=0.39 Score=55.29 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=22.0
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
+..|+++-++||.||||||++-.++.
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 56789999999999999998876543
No 477
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=89.53 E-value=1.1 Score=53.00 Aligned_cols=79 Identities=13% Similarity=0.182 Sum_probs=65.9
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcc-cccCcCCC
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIA-ETSLTIDG 415 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~-~~Gidip~ 415 (755)
.+.+++|-+|++.-+.+.++.+.+.+... ++.+..+||+++..+|..+++...+|...|||+|..+ ..++.+.+
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~-----gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~ 357 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPL-----GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKR 357 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhccc-----CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccc
Confidence 36789999999999999999888766432 4788999999999999999999999999999999644 34577778
Q ss_pred eeEEE
Q 048746 416 IKYVI 420 (755)
Q Consensus 416 v~~VI 420 (755)
+.+||
T Consensus 358 l~lvV 362 (630)
T TIGR00643 358 LALVI 362 (630)
T ss_pred cceEE
Confidence 88877
No 478
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.48 E-value=0.17 Score=52.50 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=15.4
Q ss_pred cCCeEEEEccCCCchhccH
Q 048746 145 EYQVLVIVGETGSGKTTQI 163 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~i 163 (755)
...+++++||||||||.++
T Consensus 96 ~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeccEEEECCCCCcHHHHH
Confidence 3468999999999999443
No 479
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=89.43 E-value=2.1 Score=51.74 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=19.5
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+..+++.||+|+|||+++-.+...
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999776655544
No 480
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=89.39 E-value=0.8 Score=46.30 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=19.0
Q ss_pred HHHcCC-eEEEEccCCCchhccHH
Q 048746 142 AVNEYQ-VLVIVGETGSGKTTQIP 164 (755)
Q Consensus 142 ~i~~~~-~vii~apTGsGKT~~ip 164 (755)
++..++ .+.++|+-|||||+..-
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHH
Confidence 366676 99999999999996665
No 481
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=89.33 E-value=0.19 Score=51.48 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=30.0
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCc
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ 182 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 182 (755)
+..|..++|.|+||+|||+++-+++.......+..++++.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 4567899999999999998888887765443345666654
No 482
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=89.33 E-value=0.32 Score=50.76 Aligned_cols=27 Identities=30% Similarity=0.625 Sum_probs=22.6
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+..++.++++||||||||.++-.++..
T Consensus 30 ~~~~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHcCCcEEEECCCCCchhHHHHhhhcc
Confidence 567899999999999999877776643
No 483
>PF13871 Helicase_C_4: Helicase_C-like
Probab=89.27 E-value=0.42 Score=49.46 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=46.7
Q ss_pred hCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC
Q 048746 390 FEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG 460 (755)
Q Consensus 390 ~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g 460 (755)
.+.|.+|+..|+|-|..+++||.+.+-.-+-| .+.....+...|.|...++|..||+-|.+
T Consensus 54 ~~~F~~g~k~v~iis~AgstGiSlHAd~~~~n----------qr~Rv~i~le~pwsad~aiQ~~GR~hRsn 114 (278)
T PF13871_consen 54 KQAFMDGEKDVAIISDAGSTGISLHADRRVKN----------QRRRVHITLELPWSADKAIQQFGRTHRSN 114 (278)
T ss_pred HHHHhCCCceEEEEecccccccchhccccCCC----------CCceEEEEeeCCCCHHHHHHHhccccccc
Confidence 35688999999999999999999985433332 22233334455999999999999999988
No 484
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=89.25 E-value=0.25 Score=48.02 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=19.0
Q ss_pred CCeEEEEccCCCchhccHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~ 168 (755)
|+.+++.||+||||||++-.+..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHc
Confidence 56799999999999998766653
No 485
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=89.24 E-value=0.18 Score=51.08 Aligned_cols=55 Identities=25% Similarity=0.227 Sum_probs=33.8
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCC
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGV 201 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~ 201 (755)
.|..+++.||+|||||++.-+++.......+.+++++. +.+-..++.+++.. +|.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs-~ee~~~~l~~~~~s-~g~ 72 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS-FEEPPEELIENMKS-FGW 72 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE-SSS-HHHHHHHHHT-TTS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE-ecCCHHHHHHHHHH-cCC
Confidence 57899999999999999999988776332134555543 22223444444432 444
No 486
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=89.23 E-value=1.7 Score=43.72 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=36.6
Q ss_pred ccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHH-HHcCCeEEEEccCCCchhcc
Q 048746 106 LHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQA-VNEYQVLVIVGETGSGKTTQ 162 (755)
Q Consensus 106 ~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~-i~~~~~vii~apTGsGKT~~ 162 (755)
|.+.+++.+-.+...+.+.+. --+|+ .+...+-.. |..-+-++..||+|+|||..
T Consensus 166 PtE~YsDiGGldkQIqELvEA-iVLpm-th~ekF~~lgi~pPKGvLmYGPPGTGKTlm 221 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEA-IVLPM-THKEKFENLGIRPPKGVLMYGPPGTGKTLM 221 (424)
T ss_pred CcccccccccHHHHHHHHHHH-hcccc-ccHHHHHhcCCCCCCceEeeCCCCCcHHHH
Confidence 445566666666666666655 45774 444444444 55667899999999999943
No 487
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.19 E-value=1.5 Score=52.33 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=17.8
Q ss_pred CCeEEEEccCCCchhccHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l 167 (755)
..+++++||+|+|||+++-.+.
T Consensus 207 ~~n~LLvGppGvGKT~lae~la 228 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 4689999999999997765443
No 488
>PRK13764 ATPase; Provisional
Probab=89.18 E-value=0.25 Score=56.96 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=21.0
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
..+++++++|||||||||++-.++..
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~ 280 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEF 280 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999888665544
No 489
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.13 E-value=1 Score=46.39 Aligned_cols=60 Identities=23% Similarity=0.294 Sum_probs=38.4
Q ss_pred ccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCC-----eEEEEccCCCchhccHHHHHHHh
Q 048746 104 DELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQ-----VLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 104 ~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~-----~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+.|...|++..-.+..-++|++. -.||+. +|.+..|+ -+++.||+|+|||+++-...-+.
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEA-VILPIK------FPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA 190 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEA-VILPIK------FPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA 190 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhh-eeeccc------chhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc
Confidence 34445677655555555555554 667763 24455553 59999999999998766555444
No 490
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=89.09 E-value=0.4 Score=55.06 Aligned_cols=57 Identities=18% Similarity=0.150 Sum_probs=37.5
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCcc
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKL 203 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~ 203 (755)
.|..+++.|++|+|||++.-++++......+.+++++ -+-+-..++.+++.. +|..+
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyi-s~ee~~~~i~~~~~~-~g~d~ 86 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFV-TFEESPEDIIRNVAS-FGWDL 86 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEE-EccCCHHHHHHHHHH-cCCCH
Confidence 5789999999999999999888776543324456554 333444455555544 55543
No 491
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=89.09 E-value=0.21 Score=51.59 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=25.9
Q ss_pred eEEEEccCCCchhccHHHHHHHhcccCC-CccccCccHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEAGYTKQ-GKVGCTQPRRV 186 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~~~~~~-~~ilv~~P~r~ 186 (755)
..+|.||||||||-++-.++--....+. ..|++++|.+-
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~ 128 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKD 128 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCC
Confidence 4788999999999665555443333333 36778878754
No 492
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=89.08 E-value=3.6 Score=44.79 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=60.7
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEEE
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKY 225 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~v 225 (755)
.+-+-+.|+.|+|||.+.-.+........+.++ ..-.-..++.+++.+..+.. ..
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~----HFh~Fm~~vh~~l~~~~~~~------------------~~--- 116 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRV----HFHEFMLDVHSRLHQLRGQD------------------DP--- 116 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCCccccccc----cccHHHHHHHHHHHHHhCCC------------------cc---
Confidence 567999999999999877776554433222232 22345556666666643100 00
Q ss_pred eCcHHHHHHHhCCCCCCCCCceEeecccccCCccchH-HHHHHHHHhcCCCcEEEEeccCCCHH
Q 048746 226 MTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDIL-FGLLKDLIKFRSDLKLLISSATLDAE 288 (755)
Q Consensus 226 ~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~-~~~l~~~~~~~~~~~~il~SAT~~~~ 288 (755)
-..+.+. ...+..+|.+||+|-..+....+ ..++..+. ..++-+|..|-+.+.+
T Consensus 117 --l~~va~~-----l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 117 --LPQVADE-----LAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSNRPPED 171 (362)
T ss_pred --HHHHHHH-----HHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCCCChHH
Confidence 0112222 24566799999999333333222 22333333 3467777778776443
No 493
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=89.07 E-value=0.83 Score=54.69 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=29.6
Q ss_pred CCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEecc
Q 048746 240 NLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSA 283 (755)
Q Consensus 240 ~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SA 283 (755)
.+.+-+++|+||+= -.++......+.+.+....++..+|+.|=
T Consensus 616 ll~~p~iliLDE~T-s~LD~~te~~i~~~l~~~~~~~T~iiItH 658 (694)
T TIGR03375 616 LLRDPPILLLDEPT-SAMDNRSEERFKDRLKRWLAGKTLVLVTH 658 (694)
T ss_pred HhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 45677889999996 66777777777766666555555555543
No 494
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=89.06 E-value=0.34 Score=53.75 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=26.7
Q ss_pred hHHHHHHHHHH-------HcCCeEEEEccCCCchhccHH
Q 048746 133 YPYRDELLQAV-------NEYQVLVIVGETGSGKTTQIP 164 (755)
Q Consensus 133 ~~~Q~~~l~~i-------~~~~~vii~apTGsGKT~~ip 164 (755)
+++|.++..++ ..|+.+.++||.||||||++-
T Consensus 12 r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 12 RKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred hHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 57788776665 358999999999999999887
No 495
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.02 E-value=0.7 Score=52.79 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=60.7
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCee
Q 048746 338 PGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIK 417 (755)
Q Consensus 338 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~ 417 (755)
++++||.+|+..-+.++++.|++.+ +..+..+||+++..+|.+++....+|..+|||+|..+-. ..++++.
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f--------~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~ 95 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRF--------GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLG 95 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--------CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCC
Confidence 6789999999999999999998754 135677899999999999988888999999999975432 4567777
Q ss_pred EEE
Q 048746 418 YVI 420 (755)
Q Consensus 418 ~VI 420 (755)
+||
T Consensus 96 lII 98 (505)
T TIGR00595 96 LII 98 (505)
T ss_pred EEE
Confidence 766
No 496
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=89.01 E-value=0.32 Score=47.11 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=25.9
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPR 184 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~ 184 (755)
+..++.||-+||||+.+...+..... .+.+++++-|.
T Consensus 2 ~l~~i~GpM~sGKS~eLi~~~~~~~~-~~~~v~~~kp~ 38 (176)
T PF00265_consen 2 KLEFITGPMFSGKSTELIRRIHRYEI-AGKKVLVFKPA 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH-TT-EEEEEEES
T ss_pred EEEEEECCcCChhHHHHHHHHHHHHh-CCCeEEEEEec
Confidence 45789999999999887776654422 34467777665
No 497
>PRK14873 primosome assembly protein PriA; Provisional
Probab=88.88 E-value=1.1 Score=52.57 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=61.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCee
Q 048746 338 PGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIK 417 (755)
Q Consensus 338 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~ 417 (755)
++++||.+|....+..+.+.|+..+. +..+..+||++++.+|.+.+....+|..+|+|.|-.|- =.-+++..
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~-------~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv-FaP~~~Lg 259 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLG-------AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV-FAPVEDLG 259 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcC-------CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE-EeccCCCC
Confidence 67899999999999999999988652 24577899999999999999999999999999996432 23445556
Q ss_pred EEE
Q 048746 418 YVI 420 (755)
Q Consensus 418 ~VI 420 (755)
.||
T Consensus 260 LII 262 (665)
T PRK14873 260 LVA 262 (665)
T ss_pred EEE
Confidence 655
No 498
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=88.87 E-value=0.29 Score=49.63 Aligned_cols=41 Identities=32% Similarity=0.357 Sum_probs=30.1
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRV 186 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~ 186 (755)
++++.|.|.||||||+.+-.++.+.....+..++|+=|.-+
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGE 63 (229)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCc
Confidence 47899999999999988777766653244557777766544
No 499
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=88.86 E-value=0.37 Score=47.34 Aligned_cols=55 Identities=24% Similarity=0.265 Sum_probs=34.0
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHhcc---------cCCCccccCccHHHHHHHHHHHHHHHh
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEAGY---------TKQGKVGCTQPRRVAAMSVAARVSQEM 199 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~~~---------~~~~~ilv~~P~r~la~q~a~~~~~~~ 199 (755)
..+..+++.||+|+|||+++-+++..... ..+.+|+++..--. ..++.+++....
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 46889999999999999887777665432 13447777643332 446666666544
No 500
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=88.86 E-value=0.4 Score=55.53 Aligned_cols=50 Identities=22% Similarity=0.224 Sum_probs=39.5
Q ss_pred CCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCC
Q 048746 146 YQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGV 201 (755)
Q Consensus 146 ~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~ 201 (755)
.++++++|||||||| +++|.++.. ++.++|+=|--++....+...++ +|.
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~-----~~S~VV~DpKGEl~~~Ta~~R~~-~G~ 209 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFW-----EDSVVVHDIKLENYELTSGWREK-QGQ 209 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhC-----CCCEEEEeCcHHHHHHHHHHHHH-CCC
Confidence 468999999999999 678887742 35799999999999888855544 443
Done!