Query 048746
Match_columns 755
No_of_seqs 722 out of 3977
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 22:13:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 3E-110 1E-114 987.1 58.0 646 105-754 69-732 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 3.9E-59 1.3E-63 554.0 28.5 558 108-681 8-655 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 1.3E-57 4.4E-62 539.3 29.6 531 109-657 2-612 (702)
4 3i4u_A ATP-dependent RNA helic 100.0 3.1E-56 1E-60 458.3 23.7 248 505-754 5-253 (270)
5 2zj8_A DNA helicase, putative 100.0 6.7E-56 2.3E-60 526.1 25.6 556 109-682 2-645 (720)
6 2db3_A ATP-dependent RNA helic 100.0 2E-46 7E-51 418.5 31.2 341 97-471 45-407 (434)
7 2i4i_A ATP-dependent RNA helic 100.0 5.8E-44 2E-48 396.9 27.3 343 98-473 5-385 (417)
8 3eiq_A Eukaryotic initiation f 100.0 9.1E-45 3.1E-49 402.8 19.0 339 102-473 34-389 (414)
9 3fht_A ATP-dependent RNA helic 100.0 2.9E-43 9.9E-48 390.3 28.5 343 104-472 21-380 (412)
10 3pey_A ATP-dependent RNA helic 100.0 6.1E-43 2.1E-47 385.1 29.6 341 106-472 3-357 (395)
11 2j0s_A ATP-dependent RNA helic 100.0 3.4E-43 1.2E-47 389.9 26.7 336 105-473 34-385 (410)
12 1s2m_A Putative ATP-dependent 100.0 1.3E-42 4.3E-47 384.0 28.9 333 107-473 20-367 (400)
13 4f92_B U5 small nuclear ribonu 100.0 1.5E-42 5.1E-47 436.8 33.3 470 116-595 912-1469(1724)
14 3fmp_B ATP-dependent RNA helic 100.0 7.6E-44 2.6E-48 403.4 17.3 335 106-472 90-447 (479)
15 3l9o_A ATP-dependent RNA helic 100.0 1.2E-43 4E-48 432.6 18.6 345 109-472 163-598 (1108)
16 4f92_B U5 small nuclear ribonu 100.0 6E-42 2E-46 431.3 33.7 453 132-595 80-638 (1724)
17 1hv8_A Putative ATP-dependent 100.0 3.7E-42 1.3E-46 375.0 27.7 330 108-473 6-347 (367)
18 1xti_A Probable ATP-dependent 100.0 1.8E-41 6.2E-46 373.3 30.0 332 108-472 8-358 (391)
19 2v1x_A ATP-dependent DNA helic 100.0 7.1E-42 2.4E-46 393.2 21.6 328 111-473 24-376 (591)
20 1fuu_A Yeast initiation factor 100.0 3E-42 1E-46 379.8 14.6 338 104-473 17-368 (394)
21 3sqw_A ATP-dependent RNA helic 100.0 9.9E-41 3.4E-45 386.3 20.9 332 115-473 28-400 (579)
22 1oyw_A RECQ helicase, ATP-depe 100.0 4.8E-41 1.7E-45 382.4 17.3 327 107-473 1-345 (523)
23 3i5x_A ATP-dependent RNA helic 100.0 1.2E-40 4E-45 385.0 20.6 332 115-473 79-451 (563)
24 2z0m_A 337AA long hypothetical 100.0 7E-40 2.4E-44 352.8 25.0 310 116-469 2-321 (337)
25 4a4z_A Antiviral helicase SKI2 100.0 6E-41 2E-45 405.5 11.8 382 128-526 36-556 (997)
26 3o8b_A HCV NS3 protease/helica 100.0 2.3E-40 7.8E-45 378.0 15.5 302 124-474 210-517 (666)
27 2jlq_A Serine protease subunit 100.0 2.9E-40 9.9E-45 369.9 14.4 299 130-470 4-310 (451)
28 3fho_A ATP-dependent RNA helic 100.0 1.1E-40 3.8E-45 379.3 10.7 337 105-472 116-471 (508)
29 2xgj_A ATP-dependent RNA helic 100.0 3.5E-39 1.2E-43 390.1 22.9 326 128-471 83-499 (1010)
30 2z83_A Helicase/nucleoside tri 100.0 7.5E-39 2.6E-43 359.0 16.5 292 140-471 15-313 (459)
31 2ykg_A Probable ATP-dependent 100.0 1.7E-38 5.8E-43 376.3 18.3 325 123-473 6-518 (696)
32 3oiy_A Reverse gyrase helicase 100.0 2.2E-38 7.6E-43 351.8 17.6 293 130-469 20-363 (414)
33 2v6i_A RNA helicase; membrane, 100.0 3.3E-39 1.1E-43 359.0 9.5 284 145-469 1-288 (431)
34 2whx_A Serine protease/ntpase/ 100.0 6.5E-39 2.2E-43 369.7 10.4 313 115-470 157-477 (618)
35 3rc3_A ATP-dependent RNA helic 100.0 6.7E-38 2.3E-42 362.2 16.7 367 142-562 151-533 (677)
36 4a2p_A RIG-I, retinoic acid in 100.0 5.6E-37 1.9E-41 353.5 22.9 323 130-473 6-510 (556)
37 1wp9_A ATP-dependent RNA helic 100.0 9.8E-37 3.4E-41 344.4 20.7 316 130-474 8-478 (494)
38 3tbk_A RIG-I helicase domain; 100.0 1.9E-36 6.5E-41 348.8 22.0 322 131-473 4-509 (555)
39 4a2q_A RIG-I, retinoic acid in 100.0 1.3E-35 4.3E-40 355.6 23.9 324 128-473 246-751 (797)
40 1yks_A Genome polyprotein [con 100.0 4.5E-36 1.5E-40 334.4 18.1 289 142-469 4-297 (440)
41 4gl2_A Interferon-induced heli 100.0 1.8E-36 6.3E-41 359.0 14.7 318 129-469 5-517 (699)
42 2wv9_A Flavivirin protease NS2 100.0 7E-36 2.4E-40 346.5 15.4 300 130-469 215-531 (673)
43 4a2w_A RIG-I, retinoic acid in 100.0 1.6E-34 5.4E-39 349.8 23.2 323 130-473 247-751 (936)
44 4ddu_A Reverse gyrase; topoiso 100.0 9.2E-35 3.1E-39 354.4 16.8 267 131-426 78-388 (1104)
45 1tf5_A Preprotein translocase 100.0 1.1E-33 3.8E-38 325.1 22.1 309 126-473 80-547 (844)
46 2eyq_A TRCF, transcription-rep 100.0 2.4E-33 8.3E-38 344.0 26.3 299 131-471 603-922 (1151)
47 1gm5_A RECG; helicase, replica 100.0 1.3E-34 4.3E-39 339.8 11.1 311 118-470 356-696 (780)
48 1gku_B Reverse gyrase, TOP-RG; 100.0 4.2E-34 1.4E-38 348.9 14.2 267 126-425 54-352 (1054)
49 2fwr_A DNA repair protein RAD2 100.0 1.5E-33 5.2E-38 318.3 11.5 293 129-474 91-457 (472)
50 2fsf_A Preprotein translocase 100.0 5.1E-32 1.8E-36 310.4 21.5 308 128-473 72-585 (853)
51 1nkt_A Preprotein translocase 100.0 1.6E-31 5.4E-36 306.4 23.3 311 125-473 106-619 (922)
52 2oca_A DAR protein, ATP-depend 100.0 3.9E-33 1.3E-37 318.1 9.9 301 131-469 113-453 (510)
53 3h1t_A Type I site-specific re 100.0 9.5E-31 3.2E-35 303.6 17.8 300 131-461 178-545 (590)
54 3llm_A ATP-dependent RNA helic 100.0 1.6E-28 5.6E-33 250.4 15.3 182 119-302 49-235 (235)
55 3dmq_A RNA polymerase-associat 99.9 6.2E-27 2.1E-31 283.7 15.1 313 130-472 152-616 (968)
56 3eaq_A Heat resistant RNA depe 99.9 6.5E-27 2.2E-31 234.4 11.1 184 311-526 8-211 (212)
57 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 7.8E-26 2.7E-30 271.9 18.1 311 132-469 272-707 (1038)
58 3jux_A Protein translocase sub 99.9 1.6E-24 5.6E-29 243.2 25.0 166 276-473 410-589 (822)
59 1z63_A Helicase of the SNF2/RA 99.9 8E-26 2.7E-30 257.0 14.6 308 130-473 36-455 (500)
60 3i32_A Heat resistant RNA depe 99.9 2.2E-26 7.6E-31 241.4 9.1 191 309-531 3-213 (300)
61 3fmo_B ATP-dependent RNA helic 99.9 1.6E-24 5.5E-29 228.8 16.8 193 106-300 90-294 (300)
62 3fe2_A Probable ATP-dependent 99.9 1E-24 3.4E-29 223.4 13.6 202 97-300 18-234 (242)
63 3bor_A Human initiation factor 99.9 2.8E-24 9.7E-29 219.4 15.7 198 100-300 22-231 (237)
64 3iuy_A Probable ATP-dependent 99.9 2.5E-24 8.5E-29 218.4 14.5 199 100-300 11-225 (228)
65 1qde_A EIF4A, translation init 99.9 6.8E-24 2.3E-28 214.5 16.6 196 102-299 8-212 (224)
66 1q0u_A Bstdead; DEAD protein, 99.9 5E-24 1.7E-28 214.8 14.3 193 107-301 3-209 (219)
67 3dkp_A Probable ATP-dependent 99.9 1.1E-23 3.8E-28 216.0 16.3 202 98-302 15-239 (245)
68 3ber_A Probable ATP-dependent 99.9 5.8E-24 2E-28 218.6 14.0 195 104-300 39-244 (249)
69 1c4o_A DNA nucleotide excision 99.9 5E-23 1.7E-27 239.7 23.2 168 275-472 380-551 (664)
70 1vec_A ATP-dependent RNA helic 99.9 2E-23 6.8E-28 208.1 17.1 190 108-299 3-203 (206)
71 2oxc_A Probable ATP-dependent 99.9 2E-23 6.9E-28 212.0 15.4 188 99-288 15-211 (230)
72 2pl3_A Probable ATP-dependent 99.9 3.7E-23 1.3E-27 210.9 16.5 194 104-300 21-229 (236)
73 1t6n_A Probable ATP-dependent 99.9 7.9E-23 2.7E-27 206.1 17.3 197 101-299 7-216 (220)
74 1z3i_X Similar to RAD54-like; 99.9 2E-22 6.7E-27 234.9 22.9 310 131-473 55-530 (644)
75 2gxq_A Heat resistant RNA depe 99.9 8E-23 2.7E-27 203.8 15.7 190 109-300 2-202 (207)
76 3ly5_A ATP-dependent RNA helic 99.9 5.1E-23 1.7E-27 213.2 12.9 184 109-295 53-254 (262)
77 1wrb_A DJVLGB; RNA helicase, D 99.9 3.6E-23 1.2E-27 213.4 11.4 201 98-301 11-237 (253)
78 3mwy_W Chromo domain-containin 99.9 1.7E-22 5.9E-27 241.2 18.6 312 130-474 235-687 (800)
79 2hjv_A ATP-dependent RNA helic 99.9 1.7E-21 5.9E-26 186.6 13.3 136 307-473 8-144 (163)
80 2rb4_A ATP-dependent RNA helic 99.9 2.5E-21 8.4E-26 187.8 12.6 136 308-473 7-149 (175)
81 1t5i_A C_terminal domain of A 99.8 2.4E-21 8.2E-26 187.2 11.2 133 308-471 5-138 (172)
82 1fuk_A Eukaryotic initiation f 99.8 2.3E-21 7.9E-26 186.1 10.0 135 309-473 4-139 (165)
83 2d7d_A Uvrabc system protein B 99.8 1E-20 3.5E-25 220.1 15.1 210 226-472 320-557 (661)
84 2p6n_A ATP-dependent RNA helic 99.8 1.1E-20 3.8E-25 185.5 12.2 132 308-471 29-161 (191)
85 2jgn_A DBX, DDX3, ATP-dependen 99.8 8.6E-21 3E-25 185.5 10.5 136 307-473 18-155 (185)
86 2ipc_A Preprotein translocase 99.8 5.1E-19 1.8E-23 202.4 25.2 122 126-253 75-212 (997)
87 2yjt_D ATP-dependent RNA helic 99.7 4.5E-21 1.6E-25 185.0 0.0 118 329-473 21-139 (170)
88 3b6e_A Interferon-induced heli 99.7 1.7E-18 5.9E-23 173.3 9.7 157 127-284 29-216 (216)
89 1rif_A DAR protein, DNA helica 99.7 3.8E-17 1.3E-21 171.0 8.3 148 130-285 112-262 (282)
90 2vl7_A XPD; helicase, unknown 99.7 7.6E-17 2.6E-21 183.9 11.3 128 323-467 370-518 (540)
91 2fz4_A DNA repair protein RAD2 99.6 2.1E-15 7E-20 153.3 10.8 137 130-286 92-229 (237)
92 3crv_A XPD/RAD3 related DNA he 99.5 7.6E-13 2.6E-17 151.3 24.7 312 132-467 4-528 (551)
93 1z5z_A Helicase of the SNF2/RA 99.5 4.1E-14 1.4E-18 146.3 7.1 111 337-473 111-226 (271)
94 4a15_A XPD helicase, ATP-depen 99.2 1.9E-10 6.6E-15 132.6 16.9 174 277-467 377-581 (620)
95 1w36_D RECD, exodeoxyribonucle 98.5 8.2E-08 2.8E-12 110.5 6.8 142 133-284 151-298 (608)
96 3e1s_A Exodeoxyribonuclease V, 98.1 4.4E-06 1.5E-10 95.1 8.1 126 130-282 188-313 (574)
97 3upu_A ATP-dependent DNA helic 98.0 5.2E-06 1.8E-10 92.4 6.6 129 132-282 26-162 (459)
98 4b3f_X DNA-binding protein smu 97.9 6.8E-06 2.3E-10 95.5 5.6 66 131-197 189-255 (646)
99 2gk6_A Regulator of nonsense t 97.9 1.4E-05 4.9E-10 92.2 7.2 67 131-197 180-246 (624)
100 2b8t_A Thymidine kinase; deoxy 97.6 0.00019 6.4E-09 71.1 9.3 115 144-283 10-124 (223)
101 3ec2_A DNA replication protein 97.4 0.00036 1.2E-08 66.7 8.8 47 145-192 37-83 (180)
102 2o0j_A Terminase, DNA packagin 97.3 0.002 6.8E-08 69.1 13.4 70 130-199 162-232 (385)
103 3cpe_A Terminase, DNA packagin 97.1 0.0035 1.2E-07 71.7 13.7 71 130-200 162-233 (592)
104 2orw_A Thymidine kinase; TMTK, 97.1 0.00046 1.6E-08 66.3 5.4 40 145-185 2-41 (184)
105 1xx6_A Thymidine kinase; NESG, 97.0 0.00081 2.8E-08 64.9 6.7 40 145-185 7-46 (191)
106 2xzl_A ATP-dependent helicase 96.9 0.0006 2E-08 80.6 5.3 66 132-197 361-426 (802)
107 3kl4_A SRP54, signal recogniti 96.9 0.0012 4.2E-08 71.8 7.3 122 146-285 97-223 (433)
108 3vkw_A Replicase large subunit 96.9 0.00066 2.3E-08 73.7 4.7 108 145-284 160-269 (446)
109 2wjy_A Regulator of nonsense t 96.8 0.00086 2.9E-08 79.2 6.0 66 132-197 357-422 (800)
110 1a5t_A Delta prime, HOLB; zinc 96.7 0.002 6.7E-08 68.2 6.8 135 132-283 3-146 (334)
111 2j9r_A Thymidine kinase; TK1, 96.6 0.0018 6.2E-08 63.1 5.3 41 145-186 27-67 (214)
112 2w58_A DNAI, primosome compone 96.5 0.0044 1.5E-07 60.1 7.5 24 147-170 55-78 (202)
113 3dm5_A SRP54, signal recogniti 96.5 0.0025 8.5E-08 69.4 5.7 122 146-285 100-224 (443)
114 2kjq_A DNAA-related protein; s 96.4 0.00062 2.1E-08 62.9 0.4 24 145-168 35-58 (149)
115 1njg_A DNA polymerase III subu 96.4 0.018 6.3E-07 56.7 11.4 24 147-170 46-69 (250)
116 3n70_A Transport activator; si 96.3 0.0036 1.2E-07 57.4 4.9 24 143-166 21-44 (145)
117 3te6_A Regulatory protein SIR3 96.2 0.0075 2.6E-07 62.8 7.8 43 243-286 132-174 (318)
118 2px0_A Flagellar biosynthesis 96.2 0.0066 2.3E-07 62.9 7.0 126 145-293 104-232 (296)
119 2zpa_A Uncharacterized protein 96.1 0.0025 8.6E-08 72.6 3.6 111 132-285 176-288 (671)
120 2orv_A Thymidine kinase; TP4A 96.1 0.0058 2E-07 60.1 5.6 106 145-282 18-123 (234)
121 3lfu_A DNA helicase II; SF1 he 96.1 0.004 1.4E-07 72.1 5.2 68 131-200 9-79 (647)
122 2chg_A Replication factor C sm 96.0 0.015 5.1E-07 56.6 8.3 22 147-168 39-60 (226)
123 1l8q_A Chromosomal replication 95.9 0.019 6.4E-07 60.2 9.0 36 146-182 37-72 (324)
124 3e2i_A Thymidine kinase; Zn-bi 95.8 0.0058 2E-07 59.4 4.1 41 144-185 26-66 (219)
125 1jr3_A DNA polymerase III subu 95.8 0.029 1E-06 59.8 10.2 51 230-282 106-156 (373)
126 1w4r_A Thymidine kinase; type 95.7 0.0063 2.2E-07 58.3 3.7 103 145-282 19-124 (195)
127 1vma_A Cell division protein F 95.7 0.018 6.1E-07 59.8 7.4 122 145-285 103-234 (306)
128 2qgz_A Helicase loader, putati 95.6 0.015 5.2E-07 60.5 6.8 25 146-170 152-176 (308)
129 3co5_A Putative two-component 95.6 0.006 2E-07 55.7 3.1 23 142-164 23-45 (143)
130 1fnn_A CDC6P, cell division co 95.6 0.0091 3.1E-07 64.1 5.1 23 148-170 46-68 (389)
131 3bos_A Putative DNA replicatio 95.5 0.011 3.8E-07 58.6 5.1 25 145-169 51-75 (242)
132 1sxj_E Activator 1 40 kDa subu 95.4 0.037 1.3E-06 58.6 9.0 43 241-285 132-174 (354)
133 2bjv_A PSP operon transcriptio 95.3 0.03 1E-06 56.7 7.6 24 144-167 27-50 (265)
134 3u61_B DNA polymerase accessor 95.3 0.055 1.9E-06 56.5 9.8 41 240-282 102-143 (324)
135 1iqp_A RFCS; clamp loader, ext 95.2 0.035 1.2E-06 57.8 8.2 39 242-282 109-147 (327)
136 2gno_A DNA polymerase III, gam 95.2 0.065 2.2E-06 55.6 10.0 51 230-282 69-119 (305)
137 1uaa_A REP helicase, protein ( 95.2 0.0083 2.8E-07 69.8 3.4 67 132-201 3-73 (673)
138 2z4s_A Chromosomal replication 95.2 0.042 1.4E-06 60.3 8.8 24 146-169 130-153 (440)
139 2qby_B CDC6 homolog 3, cell di 95.0 0.023 7.7E-07 60.9 6.0 24 146-169 45-68 (384)
140 2w0m_A SSO2452; RECA, SSPF, un 94.9 0.022 7.7E-07 56.0 5.2 38 143-181 20-57 (235)
141 1ojl_A Transcriptional regulat 94.8 0.054 1.8E-06 56.2 7.9 25 144-168 23-47 (304)
142 3u4q_A ATP-dependent helicase/ 94.8 0.015 5.1E-07 72.3 4.1 69 130-200 9-82 (1232)
143 1sxj_C Activator 1 40 kDa subu 94.7 0.079 2.7E-06 55.8 9.2 39 242-282 109-147 (340)
144 1sxj_D Activator 1 41 kDa subu 94.7 0.014 4.9E-07 61.7 3.3 22 147-168 59-80 (353)
145 3syl_A Protein CBBX; photosynt 94.6 0.05 1.7E-06 56.3 7.3 22 146-167 67-88 (309)
146 2v1u_A Cell division control p 94.6 0.018 6.1E-07 61.6 3.8 25 145-169 43-67 (387)
147 1pjr_A PCRA; DNA repair, DNA r 94.4 0.028 9.7E-07 65.8 5.0 69 131-201 11-82 (724)
148 2qen_A Walker-type ATPase; unk 94.3 0.082 2.8E-06 55.4 8.1 30 141-170 26-55 (350)
149 1d2n_A N-ethylmaleimide-sensit 94.3 0.044 1.5E-06 55.7 5.7 24 146-169 64-87 (272)
150 3pfi_A Holliday junction ATP-d 94.1 0.14 4.9E-06 53.6 9.5 22 147-168 56-77 (338)
151 1hqc_A RUVB; extended AAA-ATPa 93.9 0.086 3E-06 54.9 7.3 24 146-169 38-61 (324)
152 3vfd_A Spastin; ATPase, microt 93.8 0.042 1.4E-06 59.2 4.8 23 146-168 148-170 (389)
153 2qby_A CDC6 homolog 1, cell di 93.8 0.023 7.9E-07 60.7 2.5 24 146-169 45-68 (386)
154 4b4t_J 26S protease regulatory 93.7 0.028 9.6E-07 60.2 2.9 61 106-169 143-205 (405)
155 4b4t_H 26S protease regulatory 93.7 0.036 1.2E-06 60.2 3.7 61 106-169 204-266 (467)
156 1ls1_A Signal recognition part 93.5 0.073 2.5E-06 54.9 5.7 124 145-285 97-222 (295)
157 1sxj_B Activator 1 37 kDa subu 93.4 0.12 4E-06 53.6 7.2 21 148-168 44-64 (323)
158 3pvs_A Replication-associated 93.4 0.17 5.8E-06 55.4 8.7 23 147-169 51-73 (447)
159 3eie_A Vacuolar protein sortin 93.4 0.043 1.5E-06 57.4 3.7 24 146-169 51-74 (322)
160 3k1j_A LON protease, ATP-depen 93.2 0.43 1.5E-05 54.5 11.9 33 137-169 51-83 (604)
161 4b4t_I 26S protease regulatory 93.0 0.032 1.1E-06 60.1 1.9 61 106-169 177-239 (437)
162 3e70_C DPA, signal recognition 92.8 0.072 2.5E-06 55.8 4.4 123 144-285 127-253 (328)
163 2fna_A Conserved hypothetical 92.7 0.66 2.3E-05 48.4 11.9 24 147-170 31-54 (357)
164 2ffh_A Protein (FFH); SRP54, s 92.7 0.16 5.5E-06 55.0 7.0 56 145-201 97-154 (425)
165 3b85_A Phosphate starvation-in 92.7 0.094 3.2E-06 51.1 4.7 39 129-167 5-43 (208)
166 3hgt_A HDA1 complex subunit 3; 92.6 0.38 1.3E-05 49.7 9.3 107 337-474 124-240 (328)
167 2chq_A Replication factor C sm 92.6 0.04 1.4E-06 57.2 2.0 21 148-168 40-60 (319)
168 1sxj_A Activator 1 95 kDa subu 92.3 0.27 9.2E-06 55.0 8.5 25 146-170 77-101 (516)
169 2qp9_X Vacuolar protein sortin 92.2 0.077 2.6E-06 56.4 3.6 25 146-170 84-108 (355)
170 3pxi_A Negative regulator of g 92.1 0.19 6.6E-06 59.1 7.4 27 243-271 579-605 (758)
171 2r6a_A DNAB helicase, replicat 91.9 0.035 1.2E-06 61.2 0.6 39 143-181 200-238 (454)
172 2xxa_A Signal recognition part 91.7 0.16 5.5E-06 55.3 5.6 121 147-284 101-224 (433)
173 1w5s_A Origin recognition comp 91.7 0.052 1.8E-06 58.6 1.7 24 146-169 50-75 (412)
174 3im1_A Protein SNU246, PRE-mRN 91.6 0.99 3.4E-05 47.1 11.4 93 530-622 1-101 (328)
175 1j8m_F SRP54, signal recogniti 91.4 0.32 1.1E-05 50.1 7.2 122 146-285 98-224 (297)
176 1kgd_A CASK, peripheral plasma 91.2 0.091 3.1E-06 49.7 2.6 25 145-169 4-28 (180)
177 1p9r_A General secretion pathw 91.1 0.16 5.4E-06 55.0 4.7 26 145-170 166-191 (418)
178 2oap_1 GSPE-2, type II secreti 90.9 0.13 4.4E-06 57.3 3.9 26 142-167 256-281 (511)
179 2yhs_A FTSY, cell division pro 90.9 0.48 1.7E-05 52.0 8.2 35 146-181 293-327 (503)
180 2gza_A Type IV secretion syste 90.8 0.1 3.5E-06 55.5 2.9 27 142-168 171-197 (361)
181 2eyu_A Twitching motility prot 90.8 0.069 2.4E-06 54.0 1.4 26 143-168 22-47 (261)
182 3jvv_A Twitching mobility prot 90.8 0.073 2.5E-06 56.4 1.6 26 144-169 121-146 (356)
183 2q6t_A DNAB replication FORK h 90.6 0.063 2.2E-06 58.9 1.0 59 143-202 197-256 (444)
184 1zu4_A FTSY; GTPase, signal re 90.6 0.44 1.5E-05 49.6 7.4 37 144-181 103-139 (320)
185 2ewv_A Twitching motility prot 90.2 0.073 2.5E-06 56.9 1.0 38 143-180 133-170 (372)
186 1lvg_A Guanylate kinase, GMP k 90.2 0.11 3.8E-06 50.0 2.3 24 145-168 3-26 (198)
187 1g5t_A COB(I)alamin adenosyltr 89.7 0.1 3.4E-06 50.0 1.4 38 145-183 27-64 (196)
188 3tau_A Guanylate kinase, GMP k 89.6 0.15 5E-06 49.5 2.6 25 145-169 7-31 (208)
189 3tr0_A Guanylate kinase, GMP k 89.6 0.13 4.5E-06 49.4 2.3 25 144-168 5-29 (205)
190 2d7d_A Uvrabc system protein B 89.4 0.32 1.1E-05 56.1 5.6 65 133-201 14-83 (661)
191 3ney_A 55 kDa erythrocyte memb 89.3 0.16 5.6E-06 48.7 2.6 26 144-169 17-42 (197)
192 3hu3_A Transitional endoplasmi 89.3 0.38 1.3E-05 53.3 5.9 25 145-169 237-261 (489)
193 1z6g_A Guanylate kinase; struc 89.2 0.15 5.3E-06 49.8 2.4 26 143-168 20-45 (218)
194 2v9p_A Replication protein E1; 88.9 0.16 5.6E-06 52.3 2.5 36 143-182 123-158 (305)
195 2v3c_C SRP54, signal recogniti 88.9 0.13 4.3E-06 56.1 1.7 24 147-170 100-123 (432)
196 2pt7_A CAG-ALFA; ATPase, prote 88.8 0.14 4.9E-06 53.6 1.9 25 143-167 168-192 (330)
197 3vaa_A Shikimate kinase, SK; s 88.8 0.22 7.7E-06 47.7 3.2 28 143-170 22-49 (199)
198 4gp7_A Metallophosphoesterase; 88.8 0.13 4.3E-06 48.3 1.4 22 144-165 7-28 (171)
199 2j41_A Guanylate kinase; GMP, 88.6 0.17 5.9E-06 48.6 2.3 25 143-167 3-27 (207)
200 2zts_A Putative uncharacterize 88.4 0.16 5.4E-06 50.4 1.9 38 144-181 28-65 (251)
201 1jbk_A CLPB protein; beta barr 88.4 0.36 1.2E-05 45.1 4.4 24 146-169 43-66 (195)
202 2j37_W Signal recognition part 88.4 0.43 1.5E-05 52.8 5.5 120 147-285 102-225 (504)
203 3a00_A Guanylate kinase, GMP k 88.3 0.2 6.7E-06 47.6 2.4 24 146-169 1-24 (186)
204 1zp6_A Hypothetical protein AT 88.1 0.13 4.6E-06 48.7 1.1 25 143-167 6-30 (191)
205 1znw_A Guanylate kinase, GMP k 88.0 0.22 7.6E-06 48.1 2.6 26 142-167 16-41 (207)
206 2dr3_A UPF0273 protein PH0284; 88.0 0.22 7.4E-06 49.3 2.6 38 143-181 20-57 (247)
207 1cr0_A DNA primase/helicase; R 87.8 0.17 5.7E-06 52.1 1.7 39 143-181 32-70 (296)
208 4aby_A DNA repair protein RECN 87.8 0.59 2E-05 50.4 6.1 39 245-284 317-355 (415)
209 3cmu_A Protein RECA, recombina 87.6 0.21 7.1E-06 63.8 2.6 39 145-184 1426-1464(2050)
210 1gm5_A RECG; helicase, replica 87.6 0.85 2.9E-05 53.4 7.6 78 338-420 417-495 (780)
211 2p65_A Hypothetical protein PF 87.4 0.31 1.1E-05 45.5 3.2 24 146-169 43-66 (187)
212 2cvh_A DNA repair and recombin 87.3 0.15 5.1E-06 49.6 0.9 26 143-168 17-42 (220)
213 3trf_A Shikimate kinase, SK; a 87.3 0.32 1.1E-05 45.8 3.2 25 146-170 5-29 (185)
214 3cf2_A TER ATPase, transitiona 87.2 0.29 9.9E-06 57.3 3.3 63 105-170 471-535 (806)
215 1e9r_A Conjugal transfer prote 87.2 0.17 5.8E-06 55.3 1.3 43 145-188 52-94 (437)
216 1s96_A Guanylate kinase, GMP k 87.1 0.27 9.2E-06 48.2 2.6 27 143-169 13-39 (219)
217 3lnc_A Guanylate kinase, GMP k 86.9 0.28 9.6E-06 48.3 2.7 25 143-167 24-48 (231)
218 2ehv_A Hypothetical protein PH 86.9 0.22 7.7E-06 49.3 1.9 25 143-167 27-51 (251)
219 2qor_A Guanylate kinase; phosp 86.8 0.3 1E-05 47.1 2.7 27 143-169 9-35 (204)
220 3umf_A Adenylate kinase; rossm 86.8 0.24 8.4E-06 48.4 2.1 28 143-170 26-53 (217)
221 3a8t_A Adenylate isopentenyltr 86.8 0.24 8.2E-06 51.7 2.1 21 146-166 40-60 (339)
222 3exa_A TRNA delta(2)-isopenten 86.5 0.26 8.7E-06 50.9 2.1 22 146-167 3-24 (322)
223 1n0w_A DNA repair protein RAD5 86.3 0.34 1.2E-05 47.8 2.9 28 143-170 21-48 (243)
224 1rj9_A FTSY, signal recognitio 86.0 0.36 1.2E-05 49.8 3.0 35 145-180 101-135 (304)
225 3lw7_A Adenylate kinase relate 86.0 0.37 1.3E-05 44.6 2.8 20 147-166 2-21 (179)
226 3b9q_A Chloroplast SRP recepto 86.0 0.45 1.5E-05 49.1 3.7 36 144-180 98-133 (302)
227 2qmh_A HPR kinase/phosphorylas 85.9 0.3 1E-05 46.8 2.1 23 145-167 33-55 (205)
228 1ex7_A Guanylate kinase; subst 85.8 0.37 1.3E-05 45.8 2.7 23 147-169 2-24 (186)
229 3tif_A Uncharacterized ABC tra 85.5 0.21 7.1E-06 49.6 0.8 25 143-167 28-52 (235)
230 1kht_A Adenylate kinase; phosp 85.3 0.38 1.3E-05 45.4 2.6 24 146-169 3-26 (192)
231 3sr0_A Adenylate kinase; phosp 85.3 0.41 1.4E-05 46.3 2.8 23 148-170 2-24 (206)
232 4b4t_M 26S protease regulatory 85.3 0.26 8.9E-06 53.4 1.5 61 106-169 176-238 (434)
233 2ze6_A Isopentenyl transferase 85.2 0.41 1.4E-05 48.0 2.8 21 148-168 3-23 (253)
234 4ag6_A VIRB4 ATPase, type IV s 85.1 0.37 1.3E-05 51.7 2.7 41 145-186 34-74 (392)
235 3c8u_A Fructokinase; YP_612366 85.1 0.34 1.2E-05 46.9 2.1 23 145-167 21-43 (208)
236 1kag_A SKI, shikimate kinase I 85.1 0.38 1.3E-05 44.7 2.4 25 145-169 3-27 (173)
237 3kb2_A SPBC2 prophage-derived 85.0 0.48 1.6E-05 43.8 3.1 23 148-170 3-25 (173)
238 4eun_A Thermoresistant glucoki 84.9 0.41 1.4E-05 45.9 2.6 26 144-169 27-52 (200)
239 3cm0_A Adenylate kinase; ATP-b 84.9 0.35 1.2E-05 45.5 2.1 26 145-170 3-28 (186)
240 1htw_A HI0065; nucleotide-bind 84.7 0.4 1.4E-05 44.3 2.3 27 144-170 31-57 (158)
241 2og2_A Putative signal recogni 84.6 0.55 1.9E-05 49.6 3.6 35 145-180 156-190 (359)
242 3cf2_A TER ATPase, transitiona 84.6 0.34 1.2E-05 56.7 2.2 24 146-169 238-261 (806)
243 3foz_A TRNA delta(2)-isopenten 84.5 0.4 1.4E-05 49.3 2.4 21 147-167 11-31 (316)
244 1qhx_A CPT, protein (chloramph 84.5 0.53 1.8E-05 43.9 3.2 24 146-169 3-26 (178)
245 2c95_A Adenylate kinase 1; tra 84.5 0.51 1.8E-05 44.7 3.1 28 143-170 6-33 (196)
246 1r6b_X CLPA protein; AAA+, N-t 84.4 2.4 8.3E-05 49.6 9.5 110 134-282 465-605 (758)
247 3iij_A Coilin-interacting nucl 84.4 0.5 1.7E-05 44.3 2.9 27 144-170 9-35 (180)
248 1qvr_A CLPB protein; coiled co 84.4 0.82 2.8E-05 54.5 5.5 21 147-167 589-609 (854)
249 2bwj_A Adenylate kinase 5; pho 84.3 0.57 2E-05 44.5 3.4 28 143-170 9-36 (199)
250 2cbz_A Multidrug resistance-as 84.1 0.26 8.9E-06 48.9 0.8 25 143-167 28-52 (237)
251 1zd8_A GTP:AMP phosphotransfer 84.1 0.52 1.8E-05 46.1 3.1 27 144-170 5-31 (227)
252 2pcj_A ABC transporter, lipopr 83.5 0.28 9.5E-06 48.2 0.7 24 143-166 27-50 (224)
253 4a74_A DNA repair and recombin 83.5 0.42 1.4E-05 46.6 2.0 27 143-169 22-48 (231)
254 2bdt_A BH3686; alpha-beta prot 83.4 0.37 1.3E-05 45.6 1.6 22 146-167 2-23 (189)
255 3cf0_A Transitional endoplasmi 83.3 0.52 1.8E-05 48.5 2.8 27 144-170 47-73 (301)
256 2z43_A DNA repair and recombin 83.3 0.55 1.9E-05 48.9 2.9 39 144-182 105-148 (324)
257 1knq_A Gluconate kinase; ALFA/ 83.1 0.46 1.6E-05 44.3 2.1 24 145-168 7-30 (175)
258 1ly1_A Polynucleotide kinase; 83.0 0.5 1.7E-05 44.0 2.3 22 147-168 3-24 (181)
259 2rhm_A Putative kinase; P-loop 82.9 0.56 1.9E-05 44.3 2.6 24 146-169 5-28 (193)
260 1sgw_A Putative ABC transporte 82.8 0.29 9.9E-06 47.7 0.6 24 143-166 32-55 (214)
261 1y63_A LMAJ004144AAA protein; 82.6 0.54 1.9E-05 44.3 2.4 25 145-169 9-33 (184)
262 4b4t_L 26S protease subunit RP 82.6 0.41 1.4E-05 51.9 1.7 62 106-170 176-239 (437)
263 1ye8_A Protein THEP1, hypothet 82.6 0.56 1.9E-05 44.2 2.5 22 148-169 2-23 (178)
264 1ofh_A ATP-dependent HSL prote 82.6 1.8 6.1E-05 44.2 6.6 25 145-169 49-73 (310)
265 2pze_A Cystic fibrosis transme 82.5 0.32 1.1E-05 47.9 0.8 25 143-167 31-55 (229)
266 3asz_A Uridine kinase; cytidin 82.5 0.5 1.7E-05 45.6 2.1 25 144-168 4-28 (211)
267 3uie_A Adenylyl-sulfate kinase 82.4 0.51 1.7E-05 45.2 2.1 25 144-168 23-47 (200)
268 3hr8_A Protein RECA; alpha and 82.3 0.29 9.9E-06 51.7 0.3 38 145-183 60-97 (356)
269 2x8a_A Nuclear valosin-contain 82.3 0.65 2.2E-05 47.1 3.0 60 107-169 6-67 (274)
270 1g6h_A High-affinity branched- 82.2 0.34 1.1E-05 48.8 0.8 25 143-167 30-54 (257)
271 2ghi_A Transport protein; mult 82.2 0.35 1.2E-05 48.8 0.8 25 143-167 43-67 (260)
272 1b0u_A Histidine permease; ABC 82.1 0.35 1.2E-05 48.8 0.8 25 143-167 29-53 (262)
273 3h4m_A Proteasome-activating n 82.1 0.47 1.6E-05 48.2 1.8 25 144-168 49-73 (285)
274 2v54_A DTMP kinase, thymidylat 82.1 0.63 2.1E-05 44.4 2.6 25 145-169 3-27 (204)
275 1zuh_A Shikimate kinase; alpha 82.0 0.74 2.5E-05 42.5 3.1 25 146-170 7-31 (168)
276 2i3b_A HCR-ntpase, human cance 82.0 0.59 2E-05 44.5 2.4 25 146-170 1-25 (189)
277 1tev_A UMP-CMP kinase; ploop, 81.9 0.64 2.2E-05 43.9 2.6 25 146-170 3-27 (196)
278 4g1u_C Hemin import ATP-bindin 81.9 0.35 1.2E-05 48.9 0.8 25 143-167 34-58 (266)
279 1ji0_A ABC transporter; ATP bi 81.9 0.35 1.2E-05 48.0 0.8 25 143-167 29-53 (240)
280 1mv5_A LMRA, multidrug resista 81.8 0.31 1.1E-05 48.6 0.3 25 143-167 25-49 (243)
281 3gfo_A Cobalt import ATP-bindi 81.7 0.41 1.4E-05 48.6 1.2 25 143-167 31-55 (275)
282 3fb4_A Adenylate kinase; psych 81.6 0.73 2.5E-05 44.6 2.9 23 148-170 2-24 (216)
283 3crm_A TRNA delta(2)-isopenten 81.5 0.66 2.3E-05 48.1 2.7 21 147-167 6-26 (323)
284 1vpl_A ABC transporter, ATP-bi 81.5 0.38 1.3E-05 48.4 0.8 25 143-167 38-62 (256)
285 2olj_A Amino acid ABC transpor 81.4 0.38 1.3E-05 48.5 0.8 25 143-167 47-71 (263)
286 3d3q_A TRNA delta(2)-isopenten 81.2 0.71 2.4E-05 48.2 2.8 21 147-167 8-28 (340)
287 1xjc_A MOBB protein homolog; s 81.2 0.77 2.6E-05 42.8 2.8 23 147-169 5-27 (169)
288 3dl0_A Adenylate kinase; phosp 81.0 0.77 2.6E-05 44.4 2.9 23 148-170 2-24 (216)
289 3kta_A Chromosome segregation 81.0 0.74 2.5E-05 43.1 2.7 23 147-169 27-49 (182)
290 1nij_A Hypothetical protein YJ 80.9 0.55 1.9E-05 48.8 1.9 35 147-184 5-39 (318)
291 3t61_A Gluconokinase; PSI-biol 80.9 0.74 2.5E-05 44.0 2.7 23 147-169 19-41 (202)
292 2zr9_A Protein RECA, recombina 80.9 0.67 2.3E-05 48.8 2.5 37 144-181 59-95 (349)
293 1f2t_A RAD50 ABC-ATPase; DNA d 80.9 0.73 2.5E-05 42.0 2.5 22 147-168 24-45 (149)
294 2ixe_A Antigen peptide transpo 80.9 0.41 1.4E-05 48.5 0.8 25 143-167 42-66 (271)
295 2vhj_A Ntpase P4, P4; non- hyd 80.9 0.58 2E-05 48.4 1.9 26 144-169 121-146 (331)
296 2l8b_A Protein TRAI, DNA helic 80.8 1.8 6.2E-05 40.6 5.1 63 130-192 33-97 (189)
297 1aky_A Adenylate kinase; ATP:A 80.8 0.86 2.9E-05 44.3 3.2 25 146-170 4-28 (220)
298 2r44_A Uncharacterized protein 80.8 0.91 3.1E-05 47.2 3.6 33 137-169 37-69 (331)
299 2ff7_A Alpha-hemolysin translo 80.7 0.48 1.6E-05 47.3 1.3 25 143-167 32-56 (247)
300 3nh6_A ATP-binding cassette SU 80.7 0.33 1.1E-05 50.1 0.1 25 143-167 77-101 (306)
301 2yz2_A Putative ABC transporte 80.7 0.42 1.4E-05 48.3 0.8 24 143-166 30-53 (266)
302 3tlx_A Adenylate kinase 2; str 80.7 0.81 2.8E-05 45.4 2.9 26 145-170 28-53 (243)
303 1gvn_B Zeta; postsegregational 80.6 0.69 2.4E-05 47.3 2.5 24 146-169 33-56 (287)
304 2ihy_A ABC transporter, ATP-bi 80.6 0.41 1.4E-05 48.7 0.8 25 143-167 44-68 (279)
305 2qi9_C Vitamin B12 import ATP- 80.6 0.42 1.4E-05 47.8 0.8 25 143-167 23-47 (249)
306 1m7g_A Adenylylsulfate kinase; 80.5 0.79 2.7E-05 44.3 2.8 34 133-167 13-46 (211)
307 2f1r_A Molybdopterin-guanine d 80.5 0.43 1.5E-05 44.7 0.8 23 147-169 3-25 (171)
308 2nq2_C Hypothetical ABC transp 80.5 0.42 1.4E-05 47.9 0.8 25 143-167 28-52 (253)
309 3hws_A ATP-dependent CLP prote 80.4 2.6 8.9E-05 44.4 7.0 25 145-169 50-74 (363)
310 1zak_A Adenylate kinase; ATP:A 80.3 0.74 2.5E-05 44.8 2.5 25 146-170 5-29 (222)
311 1np6_A Molybdopterin-guanine d 80.3 0.85 2.9E-05 42.8 2.8 24 146-169 6-29 (174)
312 3nbx_X ATPase RAVA; AAA+ ATPas 80.3 0.97 3.3E-05 50.0 3.7 34 134-167 29-62 (500)
313 2plr_A DTMP kinase, probable t 80.2 0.78 2.7E-05 44.0 2.6 26 145-170 3-28 (213)
314 2zu0_C Probable ATP-dependent 80.2 0.55 1.9E-05 47.5 1.5 25 143-167 43-67 (267)
315 4b4t_K 26S protease regulatory 80.1 0.57 1.9E-05 50.7 1.7 60 107-169 168-229 (428)
316 2jaq_A Deoxyguanosine kinase; 80.0 0.91 3.1E-05 43.2 3.0 23 148-170 2-24 (205)
317 1cke_A CK, MSSA, protein (cyti 80.0 0.92 3.2E-05 44.1 3.1 24 146-169 5-28 (227)
318 2cdn_A Adenylate kinase; phosp 79.9 0.99 3.4E-05 43.1 3.2 25 146-170 20-44 (201)
319 1nks_A Adenylate kinase; therm 79.9 0.82 2.8E-05 43.0 2.6 23 148-170 3-25 (194)
320 1nlf_A Regulatory protein REPA 79.9 0.78 2.7E-05 46.5 2.6 27 143-169 27-53 (279)
321 2d2e_A SUFC protein; ABC-ATPas 79.8 0.56 1.9E-05 46.9 1.4 25 143-167 26-50 (250)
322 1v5w_A DMC1, meiotic recombina 79.6 0.77 2.6E-05 48.2 2.5 38 145-182 121-163 (343)
323 2bbw_A Adenylate kinase 4, AK4 79.6 0.97 3.3E-05 44.8 3.1 26 145-170 26-51 (246)
324 2qt1_A Nicotinamide riboside k 79.6 0.72 2.5E-05 44.3 2.1 25 143-167 18-42 (207)
325 3b9p_A CG5977-PA, isoform A; A 79.5 1.3 4.4E-05 45.1 4.1 24 145-168 53-76 (297)
326 2pez_A Bifunctional 3'-phospho 79.2 0.73 2.5E-05 43.1 1.9 23 145-167 4-26 (179)
327 3bh0_A DNAB-like replicative h 79.2 0.63 2.2E-05 48.3 1.6 52 143-196 65-116 (315)
328 2vli_A Antibiotic resistance p 79.1 0.94 3.2E-05 42.3 2.7 25 145-169 4-28 (183)
329 2iyv_A Shikimate kinase, SK; t 79.1 1 3.5E-05 42.2 2.9 24 147-170 3-26 (184)
330 4eaq_A DTMP kinase, thymidylat 79.0 0.86 3E-05 44.8 2.5 26 145-170 25-50 (229)
331 3be4_A Adenylate kinase; malar 78.8 1.1 3.8E-05 43.4 3.2 25 146-170 5-29 (217)
332 2yvu_A Probable adenylyl-sulfa 78.8 0.89 3E-05 42.8 2.4 25 145-169 12-36 (186)
333 1e6c_A Shikimate kinase; phosp 78.8 1 3.4E-05 41.7 2.8 23 147-169 3-25 (173)
334 1e4v_A Adenylate kinase; trans 78.7 1 3.5E-05 43.5 2.9 23 148-170 2-24 (214)
335 2wwf_A Thymidilate kinase, put 78.6 0.87 3E-05 43.7 2.4 25 145-169 9-33 (212)
336 3lda_A DNA repair protein RAD5 78.5 0.69 2.4E-05 49.7 1.7 26 145-170 177-202 (400)
337 1ukz_A Uridylate kinase; trans 78.5 1 3.5E-05 43.0 2.8 24 147-170 16-39 (203)
338 1qf9_A UMP/CMP kinase, protein 78.4 1 3.6E-05 42.3 2.8 24 147-170 7-30 (194)
339 3eph_A TRNA isopentenyltransfe 78.3 0.93 3.2E-05 48.4 2.6 20 147-166 3-22 (409)
340 3cmu_A Protein RECA, recombina 78.2 0.73 2.5E-05 59.0 2.0 92 143-253 1078-1169(2050)
341 1nn5_A Similar to deoxythymidy 78.2 1.1 3.7E-05 43.1 2.9 25 145-169 8-32 (215)
342 3cmw_A Protein RECA, recombina 78.2 0.79 2.7E-05 57.8 2.3 87 145-253 1430-1519(1706)
343 2bbs_A Cystic fibrosis transme 78.2 0.56 1.9E-05 48.0 0.8 25 143-167 61-85 (290)
344 2qz4_A Paraplegin; AAA+, SPG7, 78.2 1.1 3.6E-05 44.7 2.9 25 145-169 38-62 (262)
345 1via_A Shikimate kinase; struc 78.0 1.1 3.7E-05 41.7 2.8 24 147-170 5-28 (175)
346 1ak2_A Adenylate kinase isoenz 78.0 1.2 4E-05 43.8 3.1 26 145-170 15-40 (233)
347 1gtv_A TMK, thymidylate kinase 78.0 0.63 2.1E-05 44.8 1.1 22 148-169 2-23 (214)
348 3nwj_A ATSK2; P loop, shikimat 78.0 1.2 4.2E-05 44.4 3.3 25 145-169 47-71 (250)
349 1pzn_A RAD51, DNA repair and r 77.9 0.92 3.1E-05 47.8 2.4 26 145-170 130-155 (349)
350 1u94_A RECA protein, recombina 77.8 0.96 3.3E-05 47.7 2.6 37 145-182 62-98 (356)
351 1in4_A RUVB, holliday junction 77.6 1.4 4.8E-05 46.0 3.8 23 147-169 52-74 (334)
352 1lv7_A FTSH; alpha/beta domain 77.5 1.1 3.7E-05 44.7 2.8 24 146-169 45-68 (257)
353 4e22_A Cytidylate kinase; P-lo 77.4 1.2 4.2E-05 44.4 3.1 27 144-170 25-51 (252)
354 2vp4_A Deoxynucleoside kinase; 77.0 0.77 2.6E-05 45.1 1.4 22 145-166 19-40 (230)
355 3bgw_A DNAB-like replicative h 76.9 0.74 2.5E-05 50.2 1.4 51 143-195 194-244 (444)
356 2xb4_A Adenylate kinase; ATP-b 76.9 1.2 4.1E-05 43.4 2.8 23 148-170 2-24 (223)
357 3qf7_A RAD50; ABC-ATPase, ATPa 76.9 0.97 3.3E-05 47.9 2.3 21 148-168 25-45 (365)
358 2pt5_A Shikimate kinase, SK; a 76.8 1.3 4.4E-05 40.7 2.9 23 148-170 2-24 (168)
359 3tqc_A Pantothenate kinase; bi 76.8 1.7 5.8E-05 45.1 4.0 20 148-167 94-113 (321)
360 4a1f_A DNAB helicase, replicat 76.8 0.76 2.6E-05 48.1 1.4 38 143-181 43-80 (338)
361 2eyq_A TRCF, transcription-rep 76.6 3.8 0.00013 50.3 7.7 79 337-420 651-730 (1151)
362 2z0h_A DTMP kinase, thymidylat 76.4 1.1 3.9E-05 42.2 2.5 22 148-169 2-23 (197)
363 1ixz_A ATP-dependent metallopr 76.3 1.1 3.8E-05 44.5 2.5 24 147-170 50-73 (254)
364 3t15_A Ribulose bisphosphate c 76.2 1.3 4.5E-05 45.3 3.0 25 146-170 36-60 (293)
365 3oiy_A Reverse gyrase helicase 76.2 3.4 0.00012 44.2 6.5 79 336-420 62-144 (414)
366 3fvq_A Fe(3+) IONS import ATP- 76.0 0.85 2.9E-05 48.1 1.5 25 143-167 27-51 (359)
367 2pjz_A Hypothetical protein ST 75.9 0.97 3.3E-05 45.5 1.8 23 143-166 28-50 (263)
368 1q57_A DNA primase/helicase; d 75.7 0.83 2.8E-05 50.8 1.4 52 143-195 239-290 (503)
369 3aez_A Pantothenate kinase; tr 75.6 1.1 3.6E-05 46.5 2.1 24 144-167 88-111 (312)
370 1rz3_A Hypothetical protein rb 75.5 1.1 3.7E-05 42.9 2.0 23 145-167 21-43 (201)
371 3hjh_A Transcription-repair-co 75.4 2.3 8E-05 46.7 4.9 53 145-201 13-65 (483)
372 3a4m_A L-seryl-tRNA(SEC) kinas 75.4 1.1 3.8E-05 44.9 2.1 22 146-167 4-25 (260)
373 2pbr_A DTMP kinase, thymidylat 75.2 1.2 4.2E-05 41.9 2.3 21 148-168 2-22 (195)
374 4fcw_A Chaperone protein CLPB; 75.2 1.6 5.6E-05 44.6 3.5 23 147-169 48-70 (311)
375 1c9k_A COBU, adenosylcobinamid 75.2 0.48 1.6E-05 44.7 -0.6 44 149-197 2-45 (180)
376 2jeo_A Uridine-cytidine kinase 75.0 1 3.4E-05 44.7 1.7 26 143-168 22-47 (245)
377 1tue_A Replication protein E1; 74.9 1.2 4.3E-05 42.7 2.2 21 147-167 59-79 (212)
378 1vec_A ATP-dependent RNA helic 74.8 19 0.00065 33.7 10.9 76 337-420 70-151 (206)
379 2ius_A DNA translocase FTSK; n 74.7 1.2 4.2E-05 49.2 2.4 25 144-168 165-189 (512)
380 3auy_A DNA double-strand break 74.6 1.2 4E-05 47.4 2.2 22 147-168 26-47 (371)
381 3uk6_A RUVB-like 2; hexameric 74.6 1.4 4.9E-05 46.3 2.9 25 146-170 70-94 (368)
382 3rlf_A Maltose/maltodextrin im 74.6 0.97 3.3E-05 48.0 1.5 24 144-167 27-50 (381)
383 1z47_A CYSA, putative ABC-tran 74.5 0.96 3.3E-05 47.6 1.4 25 143-167 38-62 (355)
384 2p5t_B PEZT; postsegregational 74.5 1.1 3.7E-05 44.8 1.8 25 145-169 31-55 (253)
385 1xp8_A RECA protein, recombina 74.4 1.3 4.6E-05 46.8 2.5 37 145-182 73-109 (366)
386 3io5_A Recombination and repai 74.4 1 3.5E-05 46.5 1.5 38 146-184 29-67 (333)
387 3gd7_A Fusion complex of cysti 74.3 0.98 3.4E-05 48.2 1.5 25 143-167 44-68 (390)
388 1xwi_A SKD1 protein; VPS4B, AA 74.3 1.5 5.1E-05 45.5 2.9 24 146-169 45-68 (322)
389 2onk_A Molybdate/tungstate ABC 74.3 0.96 3.3E-05 44.9 1.3 23 144-167 23-45 (240)
390 1w36_B RECB, exodeoxyribonucle 74.2 1.8 6.2E-05 53.4 4.0 52 148-199 18-80 (1180)
391 2if2_A Dephospho-COA kinase; a 74.1 1.4 4.8E-05 42.0 2.4 21 148-168 3-23 (204)
392 2i1q_A DNA repair and recombin 74.1 1.1 3.9E-05 46.3 1.9 27 144-170 96-122 (322)
393 2yyz_A Sugar ABC transporter, 73.9 1 3.5E-05 47.5 1.5 24 144-167 27-50 (359)
394 3d8b_A Fidgetin-like protein 1 73.5 2.4 8.3E-05 44.6 4.3 25 145-169 116-140 (357)
395 1tq4_A IIGP1, interferon-induc 73.4 2.2 7.5E-05 45.9 4.0 32 136-167 59-90 (413)
396 1pui_A ENGB, probable GTP-bind 73.4 1.1 3.7E-05 42.9 1.4 23 144-166 24-46 (210)
397 1jjv_A Dephospho-COA kinase; P 73.3 1.4 4.7E-05 42.2 2.1 20 148-167 4-23 (206)
398 2it1_A 362AA long hypothetical 73.2 1.1 3.8E-05 47.3 1.5 24 144-167 27-50 (362)
399 3fe2_A Probable ATP-dependent 73.2 6.1 0.00021 38.7 7.0 74 338-420 102-181 (242)
400 3qks_A DNA double-strand break 73.0 1.6 5.4E-05 42.0 2.5 22 147-168 24-45 (203)
401 1iy2_A ATP-dependent metallopr 72.8 1.5 5.3E-05 44.2 2.5 24 147-170 74-97 (278)
402 1odf_A YGR205W, hypothetical 3 72.5 1.4 4.9E-05 45.0 2.1 22 146-167 31-52 (290)
403 1v43_A Sugar-binding transport 72.2 1.2 4.1E-05 47.2 1.5 25 143-167 34-58 (372)
404 3sop_A Neuronal-specific septi 72.0 1.6 5.4E-05 44.1 2.3 22 148-169 4-25 (270)
405 1g29_1 MALK, maltose transport 71.9 1.2 4.1E-05 47.3 1.4 24 144-167 27-50 (372)
406 1svm_A Large T antigen; AAA+ f 71.8 1.4 4.7E-05 46.9 1.9 25 144-168 167-191 (377)
407 3cr8_A Sulfate adenylyltranfer 71.8 1.9 6.6E-05 48.2 3.1 56 114-169 329-392 (552)
408 1uf9_A TT1252 protein; P-loop, 71.8 1.6 5.6E-05 41.3 2.3 21 147-167 9-29 (203)
409 1vht_A Dephospho-COA kinase; s 71.7 1.3 4.5E-05 42.8 1.6 22 146-167 4-25 (218)
410 3tui_C Methionine import ATP-b 71.7 1.3 4.3E-05 46.9 1.5 25 143-167 51-75 (366)
411 1t6n_A Probable ATP-dependent 71.3 15 0.00052 34.9 9.3 76 338-420 82-163 (220)
412 4tmk_A Protein (thymidylate ki 71.3 2.1 7.2E-05 41.5 2.9 24 145-168 2-25 (213)
413 3d31_A Sulfate/molybdate ABC t 71.1 0.99 3.4E-05 47.4 0.6 24 144-167 24-47 (348)
414 2q0z_X Protein Pro2281; SEC63, 71.0 2.6 8.8E-05 44.1 3.7 85 537-621 14-103 (339)
415 3pxg_A Negative regulator of g 70.8 2.5 8.7E-05 46.3 3.8 23 145-167 200-222 (468)
416 1sq5_A Pantothenate kinase; P- 70.6 1.6 5.6E-05 44.9 2.1 25 144-168 78-102 (308)
417 4edh_A DTMP kinase, thymidylat 70.6 1.7 5.9E-05 42.1 2.1 26 144-169 4-29 (213)
418 4a82_A Cystic fibrosis transme 70.5 1.1 3.8E-05 50.7 0.8 24 143-166 364-387 (578)
419 2dyk_A GTP-binding protein; GT 70.5 1.9 6.5E-05 38.8 2.3 21 148-168 3-23 (161)
420 3ber_A Probable ATP-dependent 70.4 16 0.00054 35.9 9.3 75 337-420 110-191 (249)
421 3r20_A Cytidylate kinase; stru 70.4 2.4 8.2E-05 41.7 3.1 26 145-170 8-33 (233)
422 1g8p_A Magnesium-chelatase 38 70.3 2.7 9.2E-05 43.8 3.7 24 146-169 45-68 (350)
423 3bor_A Human initiation factor 70.3 8.4 0.00029 37.5 7.2 76 337-420 97-178 (237)
424 2rcn_A Probable GTPase ENGC; Y 70.2 2.5 8.6E-05 44.4 3.4 26 142-167 211-236 (358)
425 1ny5_A Transcriptional regulat 70.1 5.7 0.00019 42.3 6.3 25 145-170 159-183 (387)
426 3lv8_A DTMP kinase, thymidylat 70.0 2.1 7.1E-05 42.3 2.6 26 144-169 25-50 (236)
427 3v9p_A DTMP kinase, thymidylat 70.0 1.8 6.3E-05 42.4 2.2 27 143-169 22-48 (227)
428 3tmk_A Thymidylate kinase; pho 70.0 2.3 8E-05 41.3 2.9 26 145-170 4-29 (216)
429 2ce2_X GTPase HRAS; signaling 69.9 2 6.7E-05 38.7 2.3 21 148-168 5-25 (166)
430 1um8_A ATP-dependent CLP prote 69.9 2.1 7.1E-05 45.4 2.7 23 146-168 72-94 (376)
431 2gxq_A Heat resistant RNA depe 69.8 6.7 0.00023 37.0 6.2 73 337-420 71-149 (207)
432 1z2a_A RAS-related protein RAB 69.7 2 6.9E-05 38.9 2.3 21 148-168 7-27 (168)
433 1tf7_A KAIC; homohexamer, hexa 69.6 1.6 5.4E-05 48.7 1.9 25 143-167 36-60 (525)
434 2c9o_A RUVB-like 1; hexameric 69.5 3.4 0.00012 45.1 4.4 24 146-169 63-86 (456)
435 3b5x_A Lipid A export ATP-bind 69.1 1.6 5.5E-05 49.4 1.7 25 143-167 366-390 (582)
436 3qf4_B Uncharacterized ABC tra 69.0 1.4 4.8E-05 50.1 1.2 25 143-167 378-402 (598)
437 2yv5_A YJEQ protein; hydrolase 68.9 3 0.0001 42.8 3.6 26 142-167 161-186 (302)
438 2r62_A Cell division protease 68.7 1.2 4E-05 44.7 0.5 25 146-170 44-68 (268)
439 1qde_A EIF4A, translation init 68.7 16 0.00056 34.8 8.9 74 337-420 81-160 (224)
440 2ged_A SR-beta, signal recogni 68.7 2.1 7.3E-05 40.0 2.3 23 146-168 48-70 (193)
441 2iut_A DNA translocase FTSK; n 68.6 2.1 7.2E-05 47.8 2.5 24 145-168 213-236 (574)
442 1oxx_K GLCV, glucose, ABC tran 68.5 0.99 3.4E-05 47.6 -0.1 25 143-167 28-52 (353)
443 2npi_A Protein CLP1; CLP1-PCF1 68.5 1.6 5.5E-05 47.7 1.6 25 143-167 135-159 (460)
444 3qkt_A DNA double-strand break 68.4 2 6.9E-05 44.9 2.2 22 147-168 24-45 (339)
445 1tf7_A KAIC; homohexamer, hexa 68.4 2.2 7.6E-05 47.5 2.7 38 143-181 278-315 (525)
446 2qag_B Septin-6, protein NEDD5 68.2 1.7 5.8E-05 46.8 1.6 25 143-167 37-63 (427)
447 3qf4_A ABC transporter, ATP-bi 68.1 1.3 4.6E-05 50.1 0.8 25 143-167 366-390 (587)
448 1ek0_A Protein (GTP-binding pr 67.9 2.3 7.9E-05 38.5 2.3 21 148-168 5-25 (170)
449 1ky3_A GTP-binding protein YPT 67.9 2.3 7.8E-05 39.1 2.3 22 147-168 9-30 (182)
450 2f9l_A RAB11B, member RAS onco 67.9 2.3 7.7E-05 40.3 2.3 21 148-168 7-27 (199)
451 1ltq_A Polynucleotide kinase; 67.6 2.2 7.5E-05 43.5 2.3 22 147-168 3-24 (301)
452 1g16_A RAS-related protein SEC 67.6 2.3 8E-05 38.5 2.3 21 148-168 5-25 (170)
453 1z0j_A RAB-22, RAS-related pro 67.6 2.4 8.1E-05 38.5 2.3 22 148-169 8-29 (170)
454 1oix_A RAS-related protein RAB 67.4 2.3 8E-05 40.0 2.3 21 148-168 31-51 (191)
455 1kao_A RAP2A; GTP-binding prot 67.4 2.4 8.2E-05 38.2 2.3 21 148-168 5-25 (167)
456 1u8z_A RAS-related protein RAL 67.4 2.4 8.2E-05 38.2 2.3 21 148-168 6-26 (168)
457 2pl3_A Probable ATP-dependent 67.4 9.3 0.00032 37.0 6.8 74 337-420 96-176 (236)
458 1svi_A GTP-binding protein YSX 67.2 2.3 8E-05 39.8 2.3 22 146-167 23-44 (195)
459 3pqc_A Probable GTP-binding pr 67.1 2.4 8.1E-05 39.6 2.3 22 147-168 24-45 (195)
460 1e69_A Chromosome segregation 67.0 2.6 8.8E-05 43.7 2.7 22 147-168 25-46 (322)
461 3b60_A Lipid A export ATP-bind 66.9 1.5 5.2E-05 49.6 1.0 25 143-167 366-390 (582)
462 2r2a_A Uncharacterized protein 66.8 2.7 9.4E-05 40.2 2.6 22 148-169 7-28 (199)
463 2qm8_A GTPase/ATPase; G protei 66.6 2.2 7.5E-05 44.6 2.1 25 144-168 53-77 (337)
464 2grj_A Dephospho-COA kinase; T 66.5 2.4 8.2E-05 40.3 2.1 23 146-168 12-34 (192)
465 1lw7_A Transcriptional regulat 66.5 1.9 6.4E-05 45.6 1.5 27 143-169 165-193 (365)
466 1u0l_A Probable GTPase ENGC; p 66.3 3 0.0001 42.7 3.0 26 142-167 165-190 (301)
467 2erx_A GTP-binding protein DI- 66.3 2.6 8.9E-05 38.2 2.3 20 148-167 5-24 (172)
468 2wsm_A Hydrogenase expression/ 66.2 2.8 9.5E-05 40.3 2.6 26 145-170 29-54 (221)
469 1wms_A RAB-9, RAB9, RAS-relate 66.1 2.6 8.9E-05 38.6 2.3 21 148-168 9-29 (177)
470 2yl4_A ATP-binding cassette SU 66.1 1.6 5.6E-05 49.5 1.0 25 143-167 367-391 (595)
471 1c1y_A RAS-related protein RAP 65.8 2.7 9.3E-05 37.9 2.3 21 148-168 5-25 (167)
472 2wji_A Ferrous iron transport 65.7 2.7 9.3E-05 38.3 2.3 21 147-167 4-24 (165)
473 1nrj_B SR-beta, signal recogni 65.6 2.6 9E-05 40.4 2.3 24 146-169 12-35 (218)
474 1z08_A RAS-related protein RAB 65.4 2.8 9.4E-05 38.1 2.3 22 148-169 8-29 (170)
475 2v1x_A ATP-dependent DNA helic 65.2 8.2 0.00028 43.6 6.6 59 338-405 84-144 (591)
476 1wrb_A DJVLGB; RNA helicase, D 65.2 14 0.00047 36.3 7.6 74 338-420 100-179 (253)
477 3ake_A Cytidylate kinase; CMP 65.2 3.3 0.00011 39.3 2.9 23 148-170 4-26 (208)
478 1p5z_B DCK, deoxycytidine kina 65.1 2.1 7E-05 42.9 1.4 24 144-167 22-45 (263)
479 2zan_A Vacuolar protein sortin 65.0 3 0.0001 45.3 2.9 24 146-169 167-190 (444)
480 2gj8_A MNME, tRNA modification 65.0 2.6 9E-05 38.8 2.1 22 146-167 4-25 (172)
481 1q3t_A Cytidylate kinase; nucl 64.8 3.7 0.00013 40.2 3.2 26 145-170 15-40 (236)
482 3iuy_A Probable ATP-dependent 64.5 9.1 0.00031 36.9 6.0 74 337-420 93-172 (228)
483 1r2q_A RAS-related protein RAB 64.5 2.9 0.0001 37.8 2.3 21 148-168 8-28 (170)
484 2lkc_A Translation initiation 64.5 3.2 0.00011 38.0 2.6 23 146-168 8-30 (178)
485 2oxc_A Probable ATP-dependent 64.5 18 0.00063 34.8 8.3 75 337-420 91-171 (230)
486 4f4c_A Multidrug resistance pr 64.5 2 6.7E-05 53.7 1.4 25 143-167 1102-1126(1321)
487 2y8e_A RAB-protein 6, GH09086P 64.4 2.9 0.0001 38.2 2.3 22 147-168 15-36 (179)
488 1uj2_A Uridine-cytidine kinase 64.2 3.4 0.00012 41.0 2.9 22 147-168 23-44 (252)
489 2h17_A ADP-ribosylation factor 64.1 2.6 8.8E-05 39.1 1.8 25 144-168 19-43 (181)
490 3lxx_A GTPase IMAP family memb 64.1 2.9 9.9E-05 41.0 2.3 21 147-167 30-50 (239)
491 1qhl_A Protein (cell division 64.1 1.3 4.5E-05 43.4 -0.3 21 150-170 31-51 (227)
492 1yrb_A ATP(GTP)binding protein 64.0 3.3 0.00011 41.1 2.7 25 146-170 14-38 (262)
493 2wjg_A FEOB, ferrous iron tran 64.0 3 0.0001 38.7 2.3 21 147-167 8-28 (188)
494 3m6a_A ATP-dependent protease 64.0 3.2 0.00011 46.4 2.9 25 145-169 107-131 (543)
495 3q85_A GTP-binding protein REM 63.9 3.1 0.00011 37.8 2.3 20 148-167 4-23 (169)
496 2ocp_A DGK, deoxyguanosine kin 63.9 3 0.0001 40.9 2.4 24 146-169 2-25 (241)
497 2cxx_A Probable GTP-binding pr 63.6 3 0.0001 38.7 2.3 20 148-167 3-22 (190)
498 2fn4_A P23, RAS-related protei 63.5 3.1 0.00011 38.1 2.3 23 147-169 10-32 (181)
499 2nzj_A GTP-binding protein REM 63.2 3.2 0.00011 37.8 2.3 20 148-167 6-25 (175)
500 1u0j_A DNA replication protein 62.8 5.4 0.00019 39.9 4.0 21 148-168 106-126 (267)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=3.1e-110 Score=987.12 Aligned_cols=646 Identities=53% Similarity=0.870 Sum_probs=592.8
Q ss_pred cccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccC--CCccccCc
Q 048746 105 ELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTK--QGKVGCTQ 182 (755)
Q Consensus 105 ~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~--~~~ilv~~ 182 (755)
.++..|.++++++...+.+.+.+ .+|++.+|.++..++..+++++++||||||||+++|+++....... +.+++|++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~ 147 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQ 147 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecC
Confidence 45668999999888777776655 8998888888888888999999999999999999999987765443 45799999
Q ss_pred cHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchH
Q 048746 183 PRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDIL 262 (755)
Q Consensus 183 P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~ 262 (755)
|+|+||.|++++++++++..++..+||.++++......++|+++|||++++.+..+..+.++++|||||+|+|+++.+++
T Consensus 148 P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~ 227 (773)
T 2xau_A 148 PRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDIL 227 (773)
T ss_dssp SCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHH
Confidence 99999999999999999999999999999998888889999999999999999888899999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEeccCCCHHHHHhhhCCCCEEEecCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEE
Q 048746 263 FGLLKDLIKFRSDLKLLISSATLDAEKFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDIL 342 (755)
Q Consensus 263 ~~~l~~~~~~~~~~~~il~SAT~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 342 (755)
..+++.+...+++.++|+||||++.+.+++||++.+++.++++.+|++++|...+..++....+..+..++....++++|
T Consensus 228 ~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iL 307 (773)
T 2xau_A 228 MGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDIL 307 (773)
T ss_dssp HHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEE
T ss_pred HHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEE
Confidence 99999998888899999999999999999999999999999999999999999888889888888888888877789999
Q ss_pred EEcCCHHHHHHHHHHHHHhhccc--CCCCCceEEEeccCCCCHHHHHHHhCCCC-----CCCcEEEEeCCcccccCcCCC
Q 048746 343 VFLTGQEEIETADEILKHRTRGL--GSKIAELIICPIYANLPTELQAKIFEPTP-----EGARKVVLATNIAETSLTIDG 415 (755)
Q Consensus 343 VF~~~~~~~~~l~~~L~~~~~~~--~~~~~~~~v~~lh~~l~~~~r~~i~~~f~-----~g~~~vlvaT~i~~~Gidip~ 415 (755)
|||+++++++.+++.|.+....+ .....++.+.++||+|++++|.++++.|+ +|.++||||||++++|||||+
T Consensus 308 VF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~ 387 (773)
T 2xau_A 308 LFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDG 387 (773)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTT
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCC
Confidence 99999999999999998633211 11124588999999999999999999999 999999999999999999999
Q ss_pred eeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCccccccCCCCCccchhccCchHHHH
Q 048746 416 IKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYHKDMDDNTVPEIQRTNLANVVL 495 (755)
Q Consensus 416 v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~~~l~~~~~pei~r~~l~~~~L 495 (755)
|++|||+|+.|.+.||+.+|++.|.+.|.|.++|+||+|||||.++|.||+||++.++...+.++..|||++.+|.+++|
T Consensus 388 v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L 467 (773)
T 2xau_A 388 IVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVL 467 (773)
T ss_dssp EEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHH
T ss_pred eEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999886679999999999999999999
Q ss_pred HHHHcCCCCCCcCCCCCCCcHHHHHHHHHHHHHccCccCCCCCCHHHHHhhcCCCChhhHHHHHhcccccchHHHHhhhc
Q 048746 496 ILKSLGIDDLVNFDFIDPPPEEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASDKDKCSDEIITIAA 575 (755)
Q Consensus 496 ~l~~~~~~~~~~~~~~~~p~~~~i~~a~~~L~~~g~l~~~~~lT~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a 575 (755)
.++.+|+.++..|+|++||+.+++..|++.|..+||||.+|+||++|+.|++||++|++|+||+.|..++|++++++|||
T Consensus 468 ~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a 547 (773)
T 2xau_A 468 ELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVA 547 (773)
T ss_dssp HHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHH
T ss_pred HHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCcchHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHcc---CC-chhhhhhhcchHHHHHHHHHHHHHHH
Q 048746 576 MLSVGNSIFYRPKDKQVHADNARMNFHLGNVGDHIALLRVYNSWRECN---YS-TQWCYENYIQVRSMKRARDIRDQLEG 651 (755)
Q Consensus 576 ~ls~~~~~f~~~~~~~~~~~~~~~~f~~~~~~D~~~~l~~~~~~~~~~---~~-~~~c~~~~l~~~~l~~~~~ir~qL~~ 651 (755)
||++ +++|++|.+.+.+++.+++.|.++. |||++++|+|++|.+.. .+ .+||++|||++++|+++.++|.||.+
T Consensus 548 ~ls~-~~~f~~~~~~~~~~~~~~~~f~~~~-~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~ 625 (773)
T 2xau_A 548 MLSV-PNVFIRPTKDKKRADDAKNIFAHPD-GDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLER 625 (773)
T ss_dssp HHTS-CCCBCCCTTCHHHHHHHHHTTCCTT-BHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHH
T ss_pred hccc-CCcccCChHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 9998 6799999999999999999998766 99999999999997654 44 78999999999999999999999999
Q ss_pred HHHhccccccCCC----CcHHHHHHHHHhccccceeeeccCCC-eeeeecCceEEECCCCCCccCCCceEEEEeeecChh
Q 048746 652 LLERVEIEVTSNL----NDLDAIKKAITSGFFPHSAKLQKNGS-YWTVKHPQRVHIHPSSGLAQVLPRWVVYHELVLTTK 726 (755)
Q Consensus 652 ~l~~~~~~~~~~~----~~~~~i~~~l~~g~~~nvA~~~~~g~-y~~~~~~~~v~iHPsS~l~~~~p~~vvy~el~~t~k 726 (755)
+|.+.+++..+.. .+++.|++|||+|||+|||++.++|. |+++.+++.|+|||+|+|. ..|+||||+|++.|++
T Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~-~~~~~~v~~e~~~t~~ 704 (773)
T 2xau_A 626 LMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLG-HDAEWVIYNEFVLTSK 704 (773)
T ss_dssp HHHHTTCCCCCCCTTSTTHHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCC-TTCSEEEEEEEEESSS
T ss_pred HHHhcCCCcCCCCCCchhhHHHHHHHHHHhChHhheeeccCCCcceEeeCCCEEEECCCcccC-CCCCEEEEEEeeccch
Confidence 9999888765422 34578999999999999999987775 9999999999999999994 3599999999999999
Q ss_pred hhhhhccccCHHHHHhHcccccccccCC
Q 048746 727 EYMRQVTELKPEWLVEIAPHYYQLKDVE 754 (755)
Q Consensus 727 ~yir~vt~I~~~wL~~~ap~~~~~~~~~ 754 (755)
.|||.||+|+|+||.++||+||..+++.
T Consensus 705 ~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 732 (773)
T 2xau_A 705 NYIRTVTSVRPEWLIEIAPAYYDLSNFQ 732 (773)
T ss_dssp EEEEEEEECCHHHHHHHCTTTSCGGGCC
T ss_pred hheeecccCCHHHHHHHHHHheeeccCC
Confidence 9999999999999999999999887764
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.9e-59 Score=554.02 Aligned_cols=558 Identities=16% Similarity=0.162 Sum_probs=397.2
Q ss_pred ccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHH-HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHH
Q 048746 108 SELPDKSKEKSALEMLQEERKTLPIYPYRDELLQA-VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRV 186 (755)
Q Consensus 108 ~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~-i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~ 186 (755)
.+|.++++++.+.+.+.+.++..| +++|.++++. +.++++++++||||||||+++++++++.....+++++|++|+|+
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l-~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~ 86 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKL-NPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRA 86 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBC-CHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCC-CHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHH
Confidence 468888999999888888766666 9999999999 88899999999999999999998887664435679999999999
Q ss_pred HHHHHHHHHHH--HhCCccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCCC-CCCCCceEeecccccCCccchHH
Q 048746 187 AAMSVAARVSQ--EMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEPN-LESYSVLMVDEAHERTLSTDILF 263 (755)
Q Consensus 187 la~q~a~~~~~--~~~~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~-l~~~~~vIiDEaHer~~~~d~~~ 263 (755)
||.|+++++.. .+|..++..+|+..+.+... ..++|+|+|||+|.+.+..++. +.++++|||||||+.. +.++ .
T Consensus 87 La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~-~~~~-~ 163 (715)
T 2va8_A 87 LTNEKYLTFKDWELIGFKVAMTSGDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN-DPER-G 163 (715)
T ss_dssp HHHHHHHHHGGGGGGTCCEEECCSCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG-CTTT-H
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCCCCchhhc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC-Cccc-c
Confidence 99999999842 24677777777665554433 3789999999999999887774 8999999999999532 2222 2
Q ss_pred HHHHHHHhcCCCcEEEEeccCC-CHHHHHhhhCCCCEEEecCccccceEEEecCC--------------ccch--HHHHH
Q 048746 264 GLLKDLIKFRSDLKLLISSATL-DAEKFSDYFGSAPIFKIPGRRYPVEIHYTKAP--------------EADY--IDAAI 326 (755)
Q Consensus 264 ~~l~~~~~~~~~~~~il~SAT~-~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~~--~~~~~ 326 (755)
..+..+....++.|+|+||||+ +.+.+++|++ ++.+...++++|+...+...+ .... .+...
T Consensus 164 ~~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (715)
T 2va8_A 164 PVVESVTIRAKRRNLLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAII 242 (715)
T ss_dssp HHHHHHHHHHHTSEEEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHH
T ss_pred hHHHHHHHhcccCcEEEEcCCCCCHHHHHHHhC-CCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHH
Confidence 3333333333389999999999 5899999997 567777888888775542211 0000 12233
Q ss_pred HHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcc--cCC-----------CC--------------CceEEEeccC
Q 048746 327 VTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRG--LGS-----------KI--------------AELIICPIYA 379 (755)
Q Consensus 327 ~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~--~~~-----------~~--------------~~~~v~~lh~ 379 (755)
..+.+.+ ..++++||||+++++++.++..|.+.... +.. .. ....+.++||
T Consensus 243 ~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~ 320 (715)
T 2va8_A 243 AYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHA 320 (715)
T ss_dssp HHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECT
T ss_pred HHHHHHH--hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECC
Confidence 3444433 25789999999999999999999875321 000 00 0124888999
Q ss_pred CCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCC
Q 048746 380 NLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRT 459 (755)
Q Consensus 380 ~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~ 459 (755)
+|++++|..+++.|++|.++|||||+++++|||+|++++||+. ...||++++.. ..|.|.++|.||+|||||.
T Consensus 321 ~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~ 393 (715)
T 2va8_A 321 GLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRP 393 (715)
T ss_dssp TSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCT
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCC
Confidence 9999999999999999999999999999999999999999974 45677655443 4499999999999999999
Q ss_pred C---CCEEEEeccCccc-cccC--CCCCccchhccCchH------HHHHHHHcCCC----CCCcC---CCCC-CCcHHHH
Q 048746 460 G---PGKCFRLYTLHNY-HKDM--DDNTVPEIQRTNLAN------VVLILKSLGID----DLVNF---DFID-PPPEEAL 519 (755)
Q Consensus 460 g---~G~~~~l~~~~~~-~~~l--~~~~~pei~r~~l~~------~~L~l~~~~~~----~~~~~---~~~~-~p~~~~i 519 (755)
| +|.||+++++.+. ...+ .....||+.+++|.+ .+|.+..+|.. ++..| .|+. +|+...+
T Consensus 394 g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 473 (715)
T 2va8_A 394 GFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYF 473 (715)
T ss_dssp TTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHH
T ss_pred CCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHH
Confidence 9 8999999987652 1111 124678999988876 56777777632 22222 4443 4556789
Q ss_pred HHHHHHHHHccCccCCC---CCCHHHHHhhcCCCChhhHHHHHhcccc---cchHHHHhhhcccccccccccCCcchHHH
Q 048746 520 LKALELLFALSALNKLG---ELTKVGRRMAEFPLDPMLSKMIVASDKD---KCSDEIITIAAMLSVGNSIFYRPKDKQVH 593 (755)
Q Consensus 520 ~~a~~~L~~~g~l~~~~---~lT~lG~~~~~~pl~p~~~~~l~~~~~~---~c~~~~~~i~a~ls~~~~~f~~~~~~~~~ 593 (755)
..|++.|.++|+|+.++ .+|++|+.|+++|++|+++++++.+... .|..+++.|+|+.++.+++|++|.+....
T Consensus 474 ~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l 553 (715)
T 2va8_A 474 DRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEEL 553 (715)
T ss_dssp HHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHH
T ss_pred HHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHHHH
Confidence 99999999999998774 7999999999999999999999999887 79999999999888778899988765444
Q ss_pred HHHHHh---c-ccC-CCCC-------cHHHHHHHHHHHHHccCCchhhhhhhcchHHHHHHHHHHHH----HHHHHHhcc
Q 048746 594 ADNARM---N-FHL-GNVG-------DHIALLRVYNSWRECNYSTQWCYENYIQVRSMKRARDIRDQ----LEGLLERVE 657 (755)
Q Consensus 594 ~~~~~~---~-f~~-~~~~-------D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~q----L~~~l~~~~ 657 (755)
.+.... . +.. +... .|+-..-++++|.+...-..+|.+..+....++.+.+.... +.+++...+
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~ 633 (715)
T 2va8_A 554 IELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELK 633 (715)
T ss_dssp HHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333211 1 110 1001 24444455688876555567888888866666655544444 444444443
Q ss_pred ccccCCCCcHHHHHHHHHhccccc
Q 048746 658 IEVTSNLNDLDAIKKAITSGFFPH 681 (755)
Q Consensus 658 ~~~~~~~~~~~~i~~~l~~g~~~n 681 (755)
.... ......+.+.|..|..+.
T Consensus 634 ~~~~--~~~l~~l~~rl~~gv~~e 655 (715)
T 2va8_A 634 LNEH--ADKLRILNLRVRDGIKEE 655 (715)
T ss_dssp CHHH--HHHHHHHHHHHHHTCCGG
T ss_pred cHHH--HHHHHHHHHHHHcCCChh
Confidence 2210 011223455565565443
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.3e-57 Score=539.34 Aligned_cols=531 Identities=17% Similarity=0.169 Sum_probs=390.7
Q ss_pred cCCCCc--cchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHH
Q 048746 109 ELPDKS--KEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRV 186 (755)
Q Consensus 109 ~f~~~~--~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~ 186 (755)
+|.+++ +++.+.+.+.+.++..| +++|.++++.+.++++++++||||||||+++++.+++.. ..+++++|++|+|+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l-~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~-~~~~~~l~i~P~r~ 79 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEEL-FPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREA-IKGGKSLYVVPLRA 79 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CC-CCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHH-HTTCCEEEEESSHH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCC-CHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHH-HhCCcEEEEeCcHH
Confidence 455666 77777788777666565 999999999999999999999999999998888877653 34679999999999
Q ss_pred HHHHHHHHHHH--HhCCccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCCC-CCCCCceEeecccccCC--ccch
Q 048746 187 AAMSVAARVSQ--EMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEPN-LESYSVLMVDEAHERTL--STDI 261 (755)
Q Consensus 187 la~q~a~~~~~--~~~~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~-l~~~~~vIiDEaHer~~--~~d~ 261 (755)
||.|+++++.. .+|..++..+|+....+... ..++|+|+|||++.+.+..++. +.++++|||||||+..- ....
T Consensus 80 La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~ 158 (702)
T 2p6r_A 80 LAGEKYESFKKWEKIGLRIGISTGDYESRDEHL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGAT 158 (702)
T ss_dssp HHHHHHHHHTTTTTTTCCEEEECSSCBCCSSCS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCCCcchhhc-cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccH
Confidence 99999999843 23566777777655544332 4789999999999999988765 89999999999994211 1122
Q ss_pred HHHHHHHHHhcCCCcEEEEeccCC-CHHHHHhhhCCCCEEEecCccccceEEEecCCccchHHH---------HHHHHHH
Q 048746 262 LFGLLKDLIKFRSDLKLLISSATL-DAEKFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADYIDA---------AIVTVLQ 331 (755)
Q Consensus 262 ~~~~l~~~~~~~~~~~~il~SAT~-~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---------~~~~~~~ 331 (755)
+..++..+...+++.|+|+||||+ +.+.+++|++ ++.+..+++++|+...+...+...+.+. ....+.+
T Consensus 159 ~~~ll~~l~~~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (702)
T 2p6r_A 159 LEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEE 237 (702)
T ss_dssp HHHHHHHHHHHCTTCEEEEEECCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHhcCcCceEEEECCCcCCHHHHHHHhC-CCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHH
Confidence 333344444557789999999999 5899999997 6678888888888876643322111100 2223333
Q ss_pred HHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCC---------------------CceEEEeccCCCCHHHHHHHh
Q 048746 332 IHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKI---------------------AELIICPIYANLPTELQAKIF 390 (755)
Q Consensus 332 ~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~---------------------~~~~v~~lh~~l~~~~r~~i~ 390 (755)
.. .+++++||||+++++++.++..|.+......... ....+..+||+|++++|..++
T Consensus 238 ~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 315 (702)
T 2p6r_A 238 CV--AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVE 315 (702)
T ss_dssp HH--HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHH
T ss_pred HH--hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHH
Confidence 32 2478999999999999999999987532110000 012467799999999999999
Q ss_pred CCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC---CCEEEEe
Q 048746 391 EPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG---PGKCFRL 467 (755)
Q Consensus 391 ~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g---~G~~~~l 467 (755)
+.|++|.++|||||+++++|||+|++++||+. ...|| |. ..|.|.++|.||+|||||.| +|.||++
T Consensus 316 ~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 384 (702)
T 2p6r_A 316 DAFRRGNIKVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIII 384 (702)
T ss_dssp HHHHTTSCCEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHCCCCeEEEECcHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEE
Confidence 99999999999999999999999999999974 45666 22 33999999999999999999 7999999
Q ss_pred ccCccccccC--CCCCccchhccCchH------HHHHHHHcCCC-C---CCcC---CCC----CCCcHHHHHHHHHHHHH
Q 048746 468 YTLHNYHKDM--DDNTVPEIQRTNLAN------VVLILKSLGID-D---LVNF---DFI----DPPPEEALLKALELLFA 528 (755)
Q Consensus 468 ~~~~~~~~~l--~~~~~pei~r~~l~~------~~L~l~~~~~~-~---~~~~---~~~----~~p~~~~i~~a~~~L~~ 528 (755)
+++.++...+ .....||+.+++|.+ .++.+...|.. + +..| .|+ ++|..+.+..|++.|.+
T Consensus 385 ~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~ 464 (702)
T 2p6r_A 385 VGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLEN 464 (702)
T ss_dssp CCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHH
T ss_pred ecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHH
Confidence 9987753211 125678999988876 56666677632 2 2111 333 36888999999999999
Q ss_pred ccCccCC--CCCCHHHHHhhcCCCChhhHHHHHhcccc--cchHHHHhhhcccccccccccCCcchHHHHHHH-H--hcc
Q 048746 529 LSALNKL--GELTKVGRRMAEFPLDPMLSKMIVASDKD--KCSDEIITIAAMLSVGNSIFYRPKDKQVHADNA-R--MNF 601 (755)
Q Consensus 529 ~g~l~~~--~~lT~lG~~~~~~pl~p~~~~~l~~~~~~--~c~~~~~~i~a~ls~~~~~f~~~~~~~~~~~~~-~--~~f 601 (755)
.|+|+.+ +.+|++|+.++++|++|+++++++.+... .|..+++.|+|+.++.+++|+++.+ ....+.. + ..+
T Consensus 465 ~g~i~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~ 543 (702)
T 2p6r_A 465 WGMVVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKEL 543 (702)
T ss_dssp TTSEEESSSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGS
T ss_pred CcCeeECCeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCch-HHHHHHHHhccccc
Confidence 9999977 78999999999999999999999999998 8999999999999887889999887 3222221 1 122
Q ss_pred -cCCC-CC-------cHHHHHHHHHHHHHccCCchhhhhhhcchHHHHHHH----HHHHHHHHHHHhcc
Q 048746 602 -HLGN-VG-------DHIALLRVYNSWRECNYSTQWCYENYIQVRSMKRAR----DIRDQLEGLLERVE 657 (755)
Q Consensus 602 -~~~~-~~-------D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~----~ir~qL~~~l~~~~ 657 (755)
..+. .. .|+-..-++++|.+...-...|.+.++....++.+. .+-.-+.+++...+
T Consensus 544 ~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~~g 612 (702)
T 2p6r_A 544 SYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVG 612 (702)
T ss_dssp SCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1110 11 455555567888765544567777766554554433 34444445555544
No 4
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.1e-56 Score=458.29 Aligned_cols=248 Identities=50% Similarity=0.889 Sum_probs=228.0
Q ss_pred CCcCCC-CCCCcHHHHHHHHHHHHHccCccCCCCCCHHHHHhhcCCCChhhHHHHHhcccccchHHHHhhhccccccccc
Q 048746 505 LVNFDF-IDPPPEEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASDKDKCSDEIITIAAMLSVGNSI 583 (755)
Q Consensus 505 ~~~~~~-~~~p~~~~i~~a~~~L~~~g~l~~~~~lT~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~~~ 583 (755)
...|+| +|||+.+++..|++.|+.+||||++|+||++|+.|++||++|++||||+.|..++|++++++|||+||+ +++
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~-~~~ 83 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSV-QNV 83 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTS-SCC
T ss_pred hhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCC-Ccc
Confidence 456788 999999999999999999999999999999999999999999999999999999999999999999999 569
Q ss_pred ccCCcchHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHccCCchhhhhhhcchHHHHHHHHHHHHHHHHHHhccccccCC
Q 048746 584 FYRPKDKQVHADNARMNFHLGNVGDHIALLRVYNSWRECNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEVTSN 663 (755)
Q Consensus 584 f~~~~~~~~~~~~~~~~f~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ir~qL~~~l~~~~~~~~~~ 663 (755)
|++|.+++.+++.+|++|.++. |||++++|+|++|.+.+.+.+||++|||++++|++++++|+||.++|++.++...++
T Consensus 84 f~~p~~~~~~a~~~~~~f~~~~-sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~ 162 (270)
T 3i4u_A 84 FYRPKDKQALADQKKAKFHQTE-GDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSC 162 (270)
T ss_dssp BCCCGGGHHHHHHHHHTTCBTT-BHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred ccCCchhHHHHHHHHHHccCCC-ChHHHHHHHHHHHHHcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Confidence 9999999999999999998876 999999999999998888889999999999999999999999999999998877666
Q ss_pred CCcHHHHHHHHHhccccceeeeccCCCeeeeecCceEEECCCCCCccCCCceEEEEeeecChhhhhhhccccCHHHHHhH
Q 048746 664 LNDLDAIKKAITSGFFPHSAKLQKNGSYWTVKHPQRVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEI 743 (755)
Q Consensus 664 ~~~~~~i~~~l~~g~~~nvA~~~~~g~y~~~~~~~~v~iHPsS~l~~~~p~~vvy~el~~t~k~yir~vt~I~~~wL~~~ 743 (755)
..+.+.|++|||+|||+|||+++++|.|+++.+|+.|+|||||+|++..|+||||+|++.|+|.|||+||+|+|+||.++
T Consensus 163 ~~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~~~p~wvvy~Elv~Tsk~y~r~vt~I~p~wL~~~ 242 (270)
T 3i4u_A 163 GKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEF 242 (270)
T ss_dssp TTCTHHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTTSCCSEEEEEEEEESSSEEEEEEEECCHHHHHHH
T ss_pred cchHHHHHHHHHHHhHHHHheeCCCCceEEccCCCEEEECchhhhcCCCCCEEEEEehhhhhHhHHHhccccCHHHHHHH
Confidence 66788999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCC
Q 048746 744 APHYYQLKDVE 754 (755)
Q Consensus 744 ap~~~~~~~~~ 754 (755)
+||||+.++++
T Consensus 243 ap~~~~~~~~~ 253 (270)
T 3i4u_A 243 APAFFKVLEVD 253 (270)
T ss_dssp CTTTEECC---
T ss_pred hHHHhcccccc
Confidence 99999988875
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=6.7e-56 Score=526.11 Aligned_cols=556 Identities=16% Similarity=0.129 Sum_probs=383.4
Q ss_pred cCCCCccchHHHHHHHHHhcCCCChHHHHHHHHH-HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHH
Q 048746 109 ELPDKSKEKSALEMLQEERKTLPIYPYRDELLQA-VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVA 187 (755)
Q Consensus 109 ~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~-i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~l 187 (755)
+|.++++++.+.+.+.+.++..| +++|.++++. +.++++++++||||||||+++++.+++.....+++++|++|+|+|
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l-~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raL 80 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESF-YPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKAL 80 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBC-CHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGG
T ss_pred cHhhcCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHH
Confidence 57778889998888888666565 9999999998 889999999999999999888777765544346799999999999
Q ss_pred HHHHHHHHHH--HhCCccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCCC-CCCCCceEeecccccCCccchHHH
Q 048746 188 AMSVAARVSQ--EMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEPN-LESYSVLMVDEAHERTLSTDILFG 264 (755)
Q Consensus 188 a~q~a~~~~~--~~~~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~-l~~~~~vIiDEaHer~~~~d~~~~ 264 (755)
|.|+++++++ .+|..++..+| ....+......++|+|+||+++.+.+..++. +.++++||||||| +..+.+....
T Consensus 81 a~q~~~~~~~l~~~g~~v~~~~G-~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H-~l~~~~r~~~ 158 (720)
T 2zj8_A 81 AEEKFQEFQDWEKIGLRVAMATG-DYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIH-LIGSRDRGAT 158 (720)
T ss_dssp HHHHHHHTGGGGGGTCCEEEECS-CSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGG-GGGCTTTHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEecC-CCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCc-ccCCCcccHH
Confidence 9999999963 24566665555 2222333334789999999999998877664 8999999999999 3333232222
Q ss_pred HHHHHHhcCCCcEEEEeccCC-CHHHHHhhhCCCCEEEecCccccceEEEecCCccch-------HHHHHHHHHHHHhhC
Q 048746 265 LLKDLIKFRSDLKLLISSATL-DAEKFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADY-------IDAAIVTVLQIHVTQ 336 (755)
Q Consensus 265 ~l~~~~~~~~~~~~il~SAT~-~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 336 (755)
+...+...+++.|+|+||||+ +.+.+++|++ .+.+...+++.|+...+...+...+ .......+.+.+ .
T Consensus 159 ~~~ll~~l~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 235 (720)
T 2zj8_A 159 LEVILAHMLGKAQIIGLSATIGNPEELAEWLN-AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI--R 235 (720)
T ss_dssp HHHHHHHHBTTBEEEEEECCCSCHHHHHHHTT-EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHH--H
T ss_pred HHHHHHHhhcCCeEEEEcCCcCCHHHHHHHhC-CcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHH--h
Confidence 222222233489999999999 7899999996 4556667777777665432221111 111122333322 2
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCC------------CC------------CceEEEeccCCCCHHHHHHHhCC
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGS------------KI------------AELIICPIYANLPTELQAKIFEP 392 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~------------~~------------~~~~v~~lh~~l~~~~r~~i~~~ 392 (755)
+++++||||+++++++.++..|.+....... .. ....+.++||+|++++|..+++.
T Consensus 236 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 315 (720)
T 2zj8_A 236 KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEEN 315 (720)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 4689999999999999999999875321000 00 01238899999999999999999
Q ss_pred CCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC---CCEEEEecc
Q 048746 393 TPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG---PGKCFRLYT 469 (755)
Q Consensus 393 f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g---~G~~~~l~~ 469 (755)
|++|.++|||||+++++|||+|++++||+.+ ..|| ..|. .|.|.++|.||+|||||.| +|.||.+++
T Consensus 316 f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g~-----~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 385 (720)
T 2zj8_A 316 FRKGIIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFGM-----ERIPIIEVHQMLGRAGRPKYDEVGEGIIVST 385 (720)
T ss_dssp HHTTSSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSSC-----EECCHHHHHHHHTTBCCTTTCSEEEEEEECS
T ss_pred HHCCCCeEEEECcHhhccCCCCceEEEEcCC----eeec-CCCC-----ccCCHHHHHHHHhhcCCCCCCCCceEEEEec
Confidence 9999999999999999999999999999733 3455 2221 3899999999999999998 699999999
Q ss_pred Cccccc---cCCCCCccchhcc-----CchHHHHHHHHcCCC-C---CCc---CCCC------CCCcHHHHHHHHHHHHH
Q 048746 470 LHNYHK---DMDDNTVPEIQRT-----NLANVVLILKSLGID-D---LVN---FDFI------DPPPEEALLKALELLFA 528 (755)
Q Consensus 470 ~~~~~~---~l~~~~~pei~r~-----~l~~~~L~l~~~~~~-~---~~~---~~~~------~~p~~~~i~~a~~~L~~ 528 (755)
+.+... .+.....+++... .|...++.+...|.. + +.+ +.|+ ++|..+.+..+++.|..
T Consensus 386 ~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 465 (720)
T 2zj8_A 386 SDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLE 465 (720)
T ss_dssp SSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHH
Confidence 876321 1222233333222 244445555555532 1 111 2332 33445789999999999
Q ss_pred ccCcc-CCC---CCCHHHHHhhcCCCChhhHHHHHhcccc----cchHHHHhhhcccccccccccCCcchHHHHHHHHh-
Q 048746 529 LSALN-KLG---ELTKVGRRMAEFPLDPMLSKMIVASDKD----KCSDEIITIAAMLSVGNSIFYRPKDKQVHADNARM- 599 (755)
Q Consensus 529 ~g~l~-~~~---~lT~lG~~~~~~pl~p~~~~~l~~~~~~----~c~~~~~~i~a~ls~~~~~f~~~~~~~~~~~~~~~- 599 (755)
.|+|+ .++ .+|++|+.|+++|++|.++++++.+... .|..+++.|+|++++.+++|+++.+.....+....
T Consensus 466 ~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~~~~~~ 545 (720)
T 2zj8_A 466 NEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEF 545 (720)
T ss_dssp TTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHHHHHHHHHHHHhc
Confidence 99998 655 6999999999999999999999999887 89999999999999878899998765544433211
Q ss_pred --cc-c-CCCCC-----------cHHHHHHHHHHHHHccCCchhhhhhhcchHHH----HHHHHHHHHHHHHHHhccccc
Q 048746 600 --NF-H-LGNVG-----------DHIALLRVYNSWRECNYSTQWCYENYIQVRSM----KRARDIRDQLEGLLERVEIEV 660 (755)
Q Consensus 600 --~f-~-~~~~~-----------D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l----~~~~~ir~qL~~~l~~~~~~~ 660 (755)
.+ . .+... .|+-..-+.++|.+...-..-|.+..+....+ +.+..+...+.+++...+...
T Consensus 546 ~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g~~~ 625 (720)
T 2zj8_A 546 KDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYE 625 (720)
T ss_dssp GGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCGG
T ss_pred cccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 11 0 01101 23334444677765433333444444433333 344455555556666555421
Q ss_pred cCCCCcHHHHHHHHHhccccce
Q 048746 661 TSNLNDLDAIKKAITSGFFPHS 682 (755)
Q Consensus 661 ~~~~~~~~~i~~~l~~g~~~nv 682 (755)
. ......+.++|..|.....
T Consensus 626 ~--~~~l~~l~~rl~~gv~~e~ 645 (720)
T 2zj8_A 626 I--VDYLETLRVRVKYGIREEL 645 (720)
T ss_dssp G--HHHHHHHHHHHHHTCCGGG
T ss_pred H--HHHHHHHHHHHHcCCCccc
Confidence 1 1122335666666665443
No 6
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2e-46 Score=418.47 Aligned_cols=341 Identities=19% Similarity=0.268 Sum_probs=268.1
Q ss_pred ccCCCCcccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHH--Hhc-
Q 048746 97 VIDGENLDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLH--EAG- 171 (755)
Q Consensus 97 ~~~g~~~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~--~~~- 171 (755)
.+.|.+.+.++.+|.++++++.+++++.+.++..| +++|.++++.+.++++++++|||||||| +++|.+.. ...
T Consensus 45 ~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p-t~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~ 123 (434)
T 2db3_A 45 KVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIP-TPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPH 123 (434)
T ss_dssp EEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSC-CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCC
T ss_pred EecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhccc
Confidence 35688888999999999999999999999999999 9999999999999999999999999999 44554422 211
Q ss_pred --ccCCCccccCccHHHHHHHHHHHHHHHh---CCccccEEeeeeecc--ccCCCCceEEEeCcHHHHHHHhCCC-CCCC
Q 048746 172 --YTKQGKVGCTQPRRVAAMSVAARVSQEM---GVKLGHEVGYSIRFE--DCTSEKTILKYMTDGMLLREILSEP-NLES 243 (755)
Q Consensus 172 --~~~~~~ilv~~P~r~la~q~a~~~~~~~---~~~~g~~vg~~~~~~--~~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~ 243 (755)
...+++++|++|||+||.|+++.+.+.. +..++..+|...... .....+++|+|+|||+|++.+.... .+.+
T Consensus 124 ~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~ 203 (434)
T 2db3_A 124 ELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFED 203 (434)
T ss_dssp CCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTT
T ss_pred ccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCccccc
Confidence 1124589999999999999998887743 233333333211110 1123568999999999999987654 6899
Q ss_pred CCceEeecccccCCccchHHHHHHHHHh--cCCCcEEEEeccCCCH--HHHHhhhCCCCEEEecCc----cccceEEEec
Q 048746 244 YSVLMVDEAHERTLSTDILFGLLKDLIK--FRSDLKLLISSATLDA--EKFSDYFGSAPIFKIPGR----RYPVEIHYTK 315 (755)
Q Consensus 244 ~~~vIiDEaHer~~~~d~~~~~l~~~~~--~~~~~~~il~SAT~~~--~~l~~~~~~~~~~~~~~~----~~~v~~~~~~ 315 (755)
+++||||||| ++++.++...+.+.+.. .+++.++++||||++. ..+...+...++....+. ...+.+.+..
T Consensus 204 ~~~lVlDEah-~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~ 282 (434)
T 2db3_A 204 TRFVVLDEAD-RMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYE 282 (434)
T ss_dssp CCEEEEETHH-HHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEE
T ss_pred CCeEEEccHh-hhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEE
Confidence 9999999999 88888877776666554 3678999999999954 345544444554433322 3345666655
Q ss_pred CCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCC
Q 048746 316 APEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPE 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~ 395 (755)
........ .+..+.... .+++||||++++.++.+++.|.+. ++.+..+||++++.+|..+++.|++
T Consensus 283 ~~~~~k~~----~l~~~l~~~-~~~~lVF~~t~~~a~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~l~~F~~ 348 (434)
T 2db3_A 283 VNKYAKRS----KLIEILSEQ-ADGTIVFVETKRGADFLASFLSEK---------EFPTTSIHGDRLQSQREQALRDFKN 348 (434)
T ss_dssp CCGGGHHH----HHHHHHHHC-CTTEEEECSSHHHHHHHHHHHHHT---------TCCEEEESTTSCHHHHHHHHHHHHT
T ss_pred eCcHHHHH----HHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 55544444 233333333 345999999999999999999884 3778999999999999999999999
Q ss_pred CCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCc
Q 048746 396 GARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLH 471 (755)
Q Consensus 396 g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~ 471 (755)
|+.+|||||+++++|||+|+|++||++|+ |.+..+|+||+|||||.| .|.|+.|++++
T Consensus 349 g~~~vLvaT~v~~rGlDi~~v~~VI~~d~------------------p~~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 349 GSMKVLIATSVASRGLDIKNIKHVINYDM------------------PSKIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp SSCSEEEECGGGTSSCCCTTCCEEEESSC------------------CSSHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred CCCcEEEEchhhhCCCCcccCCEEEEECC------------------CCCHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 99999999999999999999999999999 999999999999999998 59999999854
No 7
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.8e-44 Score=396.87 Aligned_cols=343 Identities=20% Similarity=0.220 Sum_probs=258.2
Q ss_pred cCCCCcccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhc--cHHHHHH--Hhc--
Q 048746 98 IDGENLDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTT--QIPQYLH--EAG-- 171 (755)
Q Consensus 98 ~~g~~~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~--~ip~~l~--~~~-- 171 (755)
+.|...|.++.+|.++++++.+++.+...++..| +++|.++++.+.++++++++||||||||. ++|.+.. ...
T Consensus 5 ~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~-~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~ 83 (417)
T 2i4i_A 5 ATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRP-TPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPG 83 (417)
T ss_dssp EESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSC-CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCC
T ss_pred cCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcccc
Confidence 3577788889999999999999999999999888 99999999999999999999999999994 4454322 111
Q ss_pred --------------ccCCCccccCccHHHHHHHHHHHHHHHhC---CccccEEeeeeecc--ccCCCCceEEEeCcHHHH
Q 048746 172 --------------YTKQGKVGCTQPRRVAAMSVAARVSQEMG---VKLGHEVGYSIRFE--DCTSEKTILKYMTDGMLL 232 (755)
Q Consensus 172 --------------~~~~~~ilv~~P~r~la~q~a~~~~~~~~---~~~g~~vg~~~~~~--~~~~~~~~I~v~T~g~Ll 232 (755)
...+++++|++|||+|+.|+++++.+... ..++...|...... .....+++|+|+||++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~ 163 (417)
T 2i4i_A 84 EALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLV 163 (417)
T ss_dssp HHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHH
T ss_pred chhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHH
Confidence 01125799999999999999999887542 22222222111000 012246799999999999
Q ss_pred HHHhCCC-CCCCCCceEeecccccCCccchHHHHHHHHHh--cC--CCcEEEEeccCCCH--HHHHhhhCCCCEEEecCc
Q 048746 233 REILSEP-NLESYSVLMVDEAHERTLSTDILFGLLKDLIK--FR--SDLKLLISSATLDA--EKFSDYFGSAPIFKIPGR 305 (755)
Q Consensus 233 ~~l~~~~-~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~--~~--~~~~~il~SAT~~~--~~l~~~~~~~~~~~~~~~ 305 (755)
+.+.... .+.++++||||||| +....++...+...+.. .. ...++++||||++. ..+...+...+.....++
T Consensus 164 ~~l~~~~~~~~~~~~iViDEah-~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 242 (417)
T 2i4i_A 164 DMMERGKIGLDFCKYLVLDEAD-RMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242 (417)
T ss_dssp HHHHTTSBCCTTCCEEEESSHH-HHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred HHHHcCCcChhhCcEEEEEChh-HhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC
Confidence 9987665 68899999999999 55555555444443332 12 26899999999954 344444444554433322
Q ss_pred ----cccceEEEecCCccchHHHHHHHHHHHHhh-CCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCC
Q 048746 306 ----RYPVEIHYTKAPEADYIDAAIVTVLQIHVT-QSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYAN 380 (755)
Q Consensus 306 ----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~ 380 (755)
...+...+...+..+... .+..+... ..++++||||+++++++.+++.|.+. ++.+..+||+
T Consensus 243 ~~~~~~~i~~~~~~~~~~~~~~----~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~h~~ 309 (417)
T 2i4i_A 243 VGSTSENITQKVVWVEESDKRS----FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGD 309 (417)
T ss_dssp ---CCSSEEEEEEECCGGGHHH----HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTT
T ss_pred CCCCccCceEEEEEeccHhHHH----HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC---------CCCeeEecCC
Confidence 223444555444444333 23333333 34678999999999999999999874 3678999999
Q ss_pred CCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC
Q 048746 381 LPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG 460 (755)
Q Consensus 381 l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g 460 (755)
+++++|..+++.|++|..+|||||+++++|+|+|++++||++|+ |.|..+|+||+|||||.|
T Consensus 310 ~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g 371 (417)
T 2i4i_A 310 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL------------------PSDIEEYVHRIGRTGRVG 371 (417)
T ss_dssp SCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSC------------------CSSHHHHHHHHTTBCC--
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcC------------------CCCHHHHHHhcCccccCC
Confidence 99999999999999999999999999999999999999999999 999999999999999998
Q ss_pred -CCEEEEeccCccc
Q 048746 461 -PGKCFRLYTLHNY 473 (755)
Q Consensus 461 -~G~~~~l~~~~~~ 473 (755)
+|.|+.|+++.+.
T Consensus 372 ~~g~~~~~~~~~~~ 385 (417)
T 2i4i_A 372 NLGLATSFFNERNI 385 (417)
T ss_dssp CCEEEEEEECGGGG
T ss_pred CCceEEEEEccccH
Confidence 5999999998765
No 8
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=9.1e-45 Score=402.84 Aligned_cols=339 Identities=16% Similarity=0.226 Sum_probs=251.4
Q ss_pred CcccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhccc--CCCccc
Q 048746 102 NLDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYT--KQGKVG 179 (755)
Q Consensus 102 ~~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~il 179 (755)
..++...+|.++++++.+++.+.+.++..| +++|.++++.+.++++++++||||||||+++...++..... .+.+++
T Consensus 34 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~-~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~l 112 (414)
T 3eiq_A 34 NWNEIVDSFDDMNLSESLLRGIYAYGFEKP-SAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQAL 112 (414)
T ss_dssp CCCCCCCCGGGGCCCHHHHHHHHHTTCCSC-CHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEE
T ss_pred CccchhcCHhhCCCCHHHHHHHHHcCCCCC-CHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEE
Confidence 344556788889999999999999888777 99999999999999999999999999997766666554332 356899
Q ss_pred cCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccc-------cCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeec
Q 048746 180 CTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED-------CTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDE 251 (755)
Q Consensus 180 v~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~-------~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDE 251 (755)
|++|+++|+.|+++++.+.. ...+..++....... .....++|+|+||++|++.+.... .+.++++|||||
T Consensus 113 il~P~~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDE 191 (414)
T 3eiq_A 113 VLAPTRELAQQIQKVVMALG-DYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 191 (414)
T ss_dssp EECSSHHHHHHHHHHHHHHG-GGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECS
T ss_pred EEeChHHHHHHHHHHHHHHh-cccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEEC
Confidence 99999999999999988743 233333332222211 122567999999999999987654 578899999999
Q ss_pred ccccCCccchHHHHHHHHHhcCCCcEEEEeccCCCHH--HHHhhhCCCCEE-EecCc---cccceEEEecCCccchHHHH
Q 048746 252 AHERTLSTDILFGLLKDLIKFRSDLKLLISSATLDAE--KFSDYFGSAPIF-KIPGR---RYPVEIHYTKAPEADYIDAA 325 (755)
Q Consensus 252 aHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~~--~l~~~~~~~~~~-~~~~~---~~~v~~~~~~~~~~~~~~~~ 325 (755)
|| +..+.++...+...+...+++.++|+||||++.. .+...+...+.. .+... ...+...+......+..
T Consensus 192 ah-~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 267 (414)
T 3eiq_A 192 AD-EMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWK--- 267 (414)
T ss_dssp HH-HHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTH---
T ss_pred HH-HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhH---
Confidence 99 5666666666666666677899999999999553 333333333433 32222 22344455544443322
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCC
Q 048746 326 IVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATN 405 (755)
Q Consensus 326 ~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~ 405 (755)
...+..+......+++||||+++++++.+++.|... ++.+..+||++++++|..+++.|++|..+|||||+
T Consensus 268 ~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 338 (414)
T 3eiq_A 268 LDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR---------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 338 (414)
T ss_dssp HHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT---------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS
T ss_pred HHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc---------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC
Confidence 224445555566789999999999999999999874 36788999999999999999999999999999999
Q ss_pred cccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 406 IAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 406 i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
++++|+|+|++++||+++. |.+..+|+||+|||||.| +|.||.++++.+.
T Consensus 339 ~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 389 (414)
T 3eiq_A 339 LLARGIDVQQVSLVINYDL------------------PTNRENYIHRIGRGGRFGRKGVAINMVTEEDK 389 (414)
T ss_dssp SCC--CCGGGCSCEEESSC------------------CSSTHHHHHHSCCC-------CEEEEECSTHH
T ss_pred ccccCCCccCCCEEEEeCC------------------CCCHHHhhhhcCcccCCCCCceEEEEEcHHHH
Confidence 9999999999999999999 999999999999999998 5999999998754
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.9e-43 Score=390.34 Aligned_cols=343 Identities=16% Similarity=0.172 Sum_probs=258.6
Q ss_pred ccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcC--CeEEEEccCCCchhccHHHHHHHhcc--cCCCccc
Q 048746 104 DELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEY--QVLVIVGETGSGKTTQIPQYLHEAGY--TKQGKVG 179 (755)
Q Consensus 104 ~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~--~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~il 179 (755)
.....+|.++++++.+++.+.+.++..| +++|.++++.+..+ ++++++||||||||.+....++.... ..+++++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~l 99 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRP-SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL 99 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSC-CHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEE
Confidence 3456789999999999999999999888 99999999999887 99999999999999655444444322 2344899
Q ss_pred cCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccc---cCCCCceEEEeCcHHHHHHHhCCC--CCCCCCceEeecccc
Q 048746 180 CTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED---CTSEKTILKYMTDGMLLREILSEP--NLESYSVLMVDEAHE 254 (755)
Q Consensus 180 v~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~---~~~~~~~I~v~T~g~Ll~~l~~~~--~l~~~~~vIiDEaHe 254 (755)
|++|+++|+.|+++++.+......+..+++...... ......+|+|+||++|++.+.... .+.++++|||||||
T Consensus 100 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah- 178 (412)
T 3fht_A 100 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD- 178 (412)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHH-
T ss_pred EECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHH-
Confidence 999999999999998888544333444554443322 223457899999999999986533 56899999999999
Q ss_pred cCCc-cchHHHHHHHHHhcCCCcEEEEeccCCCHH--HHHhhhCCCCEE-EecCc---cccceEEEecCCccchHHHHHH
Q 048746 255 RTLS-TDILFGLLKDLIKFRSDLKLLISSATLDAE--KFSDYFGSAPIF-KIPGR---RYPVEIHYTKAPEADYIDAAIV 327 (755)
Q Consensus 255 r~~~-~d~~~~~l~~~~~~~~~~~~il~SAT~~~~--~l~~~~~~~~~~-~~~~~---~~~v~~~~~~~~~~~~~~~~~~ 327 (755)
+... ..+...+.......+++.++++||||++.. .+...+...+.. .+... ...+...+......+ ....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 255 (412)
T 3fht_A 179 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD---EKFQ 255 (412)
T ss_dssp HHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHH---HHHH
T ss_pred HHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChH---HHHH
Confidence 4444 445545454444567789999999999653 444444444433 33222 223444554444332 2233
Q ss_pred HHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcc
Q 048746 328 TVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIA 407 (755)
Q Consensus 328 ~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~ 407 (755)
.+..+......+++||||+++++++.+++.|.+.. ..+..+||+|++++|..+++.|++|..+|||||+++
T Consensus 256 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~---------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 326 (412)
T 3fht_A 256 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEG---------HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVC 326 (412)
T ss_dssp HHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTT---------CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGG
T ss_pred HHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCC---------CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCcc
Confidence 44444444557899999999999999999998853 678889999999999999999999999999999999
Q ss_pred cccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEeccCcc
Q 048746 408 ETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTLHN 472 (755)
Q Consensus 408 ~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~~~ 472 (755)
++|+|+|++++||++|+.....+ ..+..+|+||+|||||.|. |.|+.+++..+
T Consensus 327 ~~Gidip~~~~Vi~~~~p~~~~~------------~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 327 ARGIDVEQVSVVINFDLPVDKDG------------NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp TSSCCCTTEEEEEESSCCBCSSS------------SBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred ccCCCccCCCEEEEECCCCCCCC------------CcchheeecccCcccCCCCCceEEEEEcChh
Confidence 99999999999999999111000 1688999999999999985 99999998654
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=6.1e-43 Score=385.15 Aligned_cols=341 Identities=15% Similarity=0.204 Sum_probs=256.3
Q ss_pred ccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcC--CeEEEEccCCCchhccHHHHHHHhccc--CCCccccC
Q 048746 106 LHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEY--QVLVIVGETGSGKTTQIPQYLHEAGYT--KQGKVGCT 181 (755)
Q Consensus 106 ~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~--~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~ 181 (755)
...+|+++++++.+++.+.+.++..| +++|.++++.+..+ ++++++||||||||+++...++..... .+++++|+
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~-~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 81 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKP-SKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICL 81 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSC-CHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEE
Confidence 45789999999999999999999888 99999999999988 999999999999996665555544222 35689999
Q ss_pred ccHHHHHHHHHHHHHHHhCCccccEEeeee--eccccCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCCc
Q 048746 182 QPRRVAAMSVAARVSQEMGVKLGHEVGYSI--RFEDCTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTLS 258 (755)
Q Consensus 182 ~P~r~la~q~a~~~~~~~~~~~g~~vg~~~--~~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~~ 258 (755)
+|+++|+.|+++++.+. +...+..++... ..........+|+|+||++|++.+.... .+.++++|||||||...-.
T Consensus 82 ~P~~~L~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~ 160 (395)
T 3pey_A 82 APSRELARQTLEVVQEM-GKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQ 160 (395)
T ss_dssp CSSHHHHHHHHHHHHHH-TTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHH-hcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCc
Confidence 99999999999988874 333333333222 2222233468999999999999886654 6889999999999933222
Q ss_pred cchHHHHHHHHHhcCCCcEEEEeccCCCH--HHHHhhhCCCC-EEEecCcc---ccceEEEecCCccchHHHHHHHHHHH
Q 048746 259 TDILFGLLKDLIKFRSDLKLLISSATLDA--EKFSDYFGSAP-IFKIPGRR---YPVEIHYTKAPEADYIDAAIVTVLQI 332 (755)
Q Consensus 259 ~d~~~~~l~~~~~~~~~~~~il~SAT~~~--~~l~~~~~~~~-~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~ 332 (755)
.++...+.......+++.++++||||++. ..+...+...+ .+.+.... ..+...+...... ......+..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~ 237 (395)
T 3pey_A 161 QGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNE---ADKFDVLTEL 237 (395)
T ss_dssp TTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSH---HHHHHHHHHH
T ss_pred cccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCch---HHHHHHHHHH
Confidence 45555555555556678999999999954 34444443333 33333222 2334444443332 2223344444
Q ss_pred HhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCc
Q 048746 333 HVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLT 412 (755)
Q Consensus 333 ~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gid 412 (755)
......+++||||+++++++.+++.|.+.. ..+..+||++++++|..+++.|++|+.+|||||+++++|+|
T Consensus 238 ~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~---------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 308 (395)
T 3pey_A 238 YGLMTIGSSIIFVATKKTANVLYGKLKSEG---------HEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGID 308 (395)
T ss_dssp HTTTTSSEEEEECSCHHHHHHHHHHHHHTT---------CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCC
T ss_pred HHhccCCCEEEEeCCHHHHHHHHHHHHhcC---------CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCC
Confidence 555567899999999999999999998853 67888999999999999999999999999999999999999
Q ss_pred CCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-CEEEEeccCcc
Q 048746 413 IDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-GKCFRLYTLHN 472 (755)
Q Consensus 413 ip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-G~~~~l~~~~~ 472 (755)
+|++++||++|+.. +...+.|..+|+||+|||||.|. |.|+.++++.+
T Consensus 309 ip~~~~Vi~~~~p~------------~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 309 IPTVSMVVNYDLPT------------LANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp CTTEEEEEESSCCB------------CTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred cccCCEEEEcCCCC------------CCcCCCCHHHhhHhccccccCCCCceEEEEEechH
Confidence 99999999999810 00112399999999999999985 99999998654
No 11
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.4e-43 Score=389.95 Aligned_cols=336 Identities=15% Similarity=0.224 Sum_probs=259.4
Q ss_pred cccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcc--cCCCccccCc
Q 048746 105 ELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGY--TKQGKVGCTQ 182 (755)
Q Consensus 105 ~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~ilv~~ 182 (755)
.+..+|.++++++.+++.+.+.++..| +++|.++++.+.++++++++||||||||.+....++.... ..+.+++|++
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~-~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 112 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKP-SAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 112 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSC-CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEEC
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEc
Confidence 345679999999999999999999888 9999999999999999999999999999555544444322 2456999999
Q ss_pred cHHHHHHHHHHHHHHHhCCccccEEeeeeecccc------CCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeeccccc
Q 048746 183 PRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDC------TSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHER 255 (755)
Q Consensus 183 P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~------~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer 255 (755)
|||+|+.|+++.+.+ ++...+..++........ ...+.+|+|+||++|++.+.... .+.++++||||||| +
T Consensus 113 Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah-~ 190 (410)
T 2j0s_A 113 PTRELAVQIQKGLLA-LGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEAD-E 190 (410)
T ss_dssp SSHHHHHHHHHHHHH-HTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-H
T ss_pred CcHHHHHHHHHHHHH-HhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHH-H
Confidence 999999999998887 443333333322222111 11356899999999999887653 67889999999999 6
Q ss_pred CCccchHHHHHHHHHhcCCCcEEEEeccCCCHH--HHHhhhCCCCEEEecCc----cccceEEEecCCccchHHHHHHHH
Q 048746 256 TLSTDILFGLLKDLIKFRSDLKLLISSATLDAE--KFSDYFGSAPIFKIPGR----RYPVEIHYTKAPEADYIDAAIVTV 329 (755)
Q Consensus 256 ~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~~--~l~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~ 329 (755)
..+.++...+...+...+++.++++||||++.+ .+...+...|....... ...+...+......+.... .+
T Consensus 191 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~---~l 267 (410)
T 2j0s_A 191 MLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFD---TL 267 (410)
T ss_dssp HTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHH---HH
T ss_pred HHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHH---HH
Confidence 677776666655555566789999999999654 33333333444333222 2234455554443332222 33
Q ss_pred HHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccc
Q 048746 330 LQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAET 409 (755)
Q Consensus 330 ~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~ 409 (755)
..+......+++||||+++++++.+++.|.+.+ +.+..+||++++.+|..+++.|++|..+|||||+++++
T Consensus 268 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 338 (410)
T 2j0s_A 268 CDLYDTLTITQAVIFCNTKRKVDWLTEKMREAN---------FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 338 (410)
T ss_dssp HHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTT---------CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSS
T ss_pred HHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCC---------CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhC
Confidence 333333446799999999999999999998843 67888999999999999999999999999999999999
Q ss_pred cCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 410 SLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 410 Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
|+|+|++++||++|+ |.+..+|+||+||+||.| +|.|+.++++.+.
T Consensus 339 Gidi~~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 385 (410)
T 2j0s_A 339 GLDVPQVSLIINYDL------------------PNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 385 (410)
T ss_dssp SCCCTTEEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGH
T ss_pred cCCcccCCEEEEECC------------------CCCHHHHHHhcccccCCCCceEEEEEecHHHH
Confidence 999999999999999 999999999999999998 5999999998764
No 12
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.3e-42 Score=384.00 Aligned_cols=333 Identities=17% Similarity=0.170 Sum_probs=254.7
Q ss_pred cccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhccc--CCCccccCccH
Q 048746 107 HSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYT--KQGKVGCTQPR 184 (755)
Q Consensus 107 ~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~~P~ 184 (755)
..+|+++++++.+++.+.+.++..| +++|.++++.+.++++++++||||||||+.....++..... .+.+++|++|+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKP-SPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSC-CHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 4578999999999999999998888 99999999999999999999999999995544444433222 34589999999
Q ss_pred HHHHHHHHHHHHHHhCCccccEEeeeeeccc------cCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCC
Q 048746 185 RVAAMSVAARVSQEMGVKLGHEVGYSIRFED------CTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTL 257 (755)
Q Consensus 185 r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~------~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~ 257 (755)
++|+.|+++++.+.. ...+..++....... ......+|+|+||+.|++.+.... .+.++++||||||| +..
T Consensus 99 ~~L~~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH-~~~ 176 (400)
T 1s2m_A 99 RELALQTSQVVRTLG-KHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD-KML 176 (400)
T ss_dssp HHHHHHHHHHHHHHT-TTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH-HHS
T ss_pred HHHHHHHHHHHHHHh-cccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch-Hhh
Confidence 999999999888754 222333332221111 123567899999999999886653 68899999999999 666
Q ss_pred ccchHHHHHHHHHhcCCCcEEEEeccCCCHH---HHHhhhCCCCEEEecCc--cccceEEEecCCccchHHHHHHHHHHH
Q 048746 258 STDILFGLLKDLIKFRSDLKLLISSATLDAE---KFSDYFGSAPIFKIPGR--RYPVEIHYTKAPEADYIDAAIVTVLQI 332 (755)
Q Consensus 258 ~~d~~~~~l~~~~~~~~~~~~il~SAT~~~~---~l~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~ 332 (755)
..++...+...+....+..++++||||++.. .+..++.....+.+... ...+..++.......... .+..+
T Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~----~l~~~ 252 (400)
T 1s2m_A 177 SRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLH----CLNTL 252 (400)
T ss_dssp SHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHH----HHHHH
T ss_pred hhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHH----HHHHH
Confidence 6555544433333455688999999999643 33444443322222222 223444555444444333 23333
Q ss_pred HhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCc
Q 048746 333 HVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLT 412 (755)
Q Consensus 333 ~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gid 412 (755)
......+++||||+++++++.+++.|.+.+ +.+..+||++++.+|..+++.|++|..+|||||+++++|+|
T Consensus 253 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gid 323 (400)
T 1s2m_A 253 FSKLQINQAIIFCNSTNRVELLAKKITDLG---------YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGID 323 (400)
T ss_dssp HHHSCCSEEEEECSSHHHHHHHHHHHHHHT---------CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCC
T ss_pred HhhcCCCcEEEEEecHHHHHHHHHHHHhcC---------CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCC
Confidence 344567899999999999999999998853 67889999999999999999999999999999999999999
Q ss_pred CCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 413 IDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 413 ip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
+|++++||++++ |.+..+|+||+|||||.| +|.|+.++++.+.
T Consensus 324 ip~~~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~ 367 (400)
T 1s2m_A 324 IQAVNVVINFDF------------------PKTAETYLHRIGRSGRFGHLGLAINLINWNDR 367 (400)
T ss_dssp CTTEEEEEESSC------------------CSSHHHHHHHHCBSSCTTCCEEEEEEECGGGH
T ss_pred ccCCCEEEEeCC------------------CCCHHHHHHhcchhcCCCCCceEEEEeccchH
Confidence 999999999999 999999999999999998 6999999998765
No 13
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.5e-42 Score=436.78 Aligned_cols=470 Identities=14% Similarity=0.103 Sum_probs=325.4
Q ss_pred chHHHHHHHHHhcCCCChHHHHHHHHHHH-cCCeEEEEccCCCchhccHHHHHHHhcc-cCCCccccCccHHHHHHHHHH
Q 048746 116 EKSALEMLQEERKTLPIYPYRDELLQAVN-EYQVLVIVGETGSGKTTQIPQYLHEAGY-TKQGKVGCTQPRRVAAMSVAA 193 (755)
Q Consensus 116 ~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~-~~~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~ilv~~P~r~la~q~a~ 193 (755)
....++++...++..+ +|+|.++++.+. .+++++++||||||||+++...++.... .++++++|++|+|+||.|+++
T Consensus 912 ~~~~~e~l~~~~f~~f-npiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~ 990 (1724)
T 4f92_B 912 RNSAFESLYQDKFPFF-NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYM 990 (1724)
T ss_dssp CCHHHHTTTTTTCSBC-CHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHH
T ss_pred cCHHHHHHHHhcCCCC-CHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHH
Confidence 3567777877778776 999999999975 5688999999999999766555554422 245689999999999999999
Q ss_pred HHHHHhCCccccEEeeeeeccc---cCCCCceEEEeCcHHHHHHHhCC---CCCCCCCceEeecccccCCcc--chHHHH
Q 048746 194 RVSQEMGVKLGHEVGYSIRFED---CTSEKTILKYMTDGMLLREILSE---PNLESYSVLMVDEAHERTLST--DILFGL 265 (755)
Q Consensus 194 ~~~~~~~~~~g~~vg~~~~~~~---~~~~~~~I~v~T~g~Ll~~l~~~---~~l~~~~~vIiDEaHer~~~~--d~~~~~ 265 (755)
.+.+.++...|..|+...+... ....+++|+||||+++...+... ..+.++++||+||+| +..+. ..+..+
T Consensus 991 ~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H-~l~d~rg~~le~i 1069 (1724)
T 4f92_B 991 DWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH-LIGGENGPVLEVI 1069 (1724)
T ss_dssp HHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGG-GGGSTTHHHHHHH
T ss_pred HHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechh-hcCCCCCccHHHH
Confidence 9998888777766664332211 11245789999999986666432 257899999999999 32221 122223
Q ss_pred HHHH---H-hcCCCcEEEEeccCC-CHHHHHhhhCCC--CEEEec--CccccceEEEecCCccchHHHH---HHHH-HHH
Q 048746 266 LKDL---I-KFRSDLKLLISSATL-DAEKFSDYFGSA--PIFKIP--GRRYPVEIHYTKAPEADYIDAA---IVTV-LQI 332 (755)
Q Consensus 266 l~~~---~-~~~~~~~~il~SAT~-~~~~l~~~~~~~--~~~~~~--~~~~~v~~~~~~~~~~~~~~~~---~~~~-~~~ 332 (755)
+.++ . ...+++|+|+||||+ |++.+++|++.. .++.+. .|+.|++.+....+........ ...+ ..+
T Consensus 1070 l~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i 1149 (1724)
T 4f92_B 1070 CSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAI 1149 (1724)
T ss_dssp HHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHH
Confidence 3322 2 245689999999999 899999999753 344333 3455666554433322221111 1111 122
Q ss_pred HhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCC-------------------------CCceEEEeccCCCCHHHHH
Q 048746 333 HVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSK-------------------------IAELIICPIYANLPTELQA 387 (755)
Q Consensus 333 ~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~-------------------------~~~~~v~~lh~~l~~~~r~ 387 (755)
....+.+++||||++++.++.++..|.......... .-...|..+||+|++++|.
T Consensus 1150 ~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~ 1229 (1724)
T 4f92_B 1150 TKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERR 1229 (1724)
T ss_dssp HHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHH
T ss_pred HHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHH
Confidence 234557899999999999999998876543211100 0012478899999999999
Q ss_pred HHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC---CCEE
Q 048746 388 KIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG---PGKC 464 (755)
Q Consensus 388 ~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g---~G~~ 464 (755)
.+++.|++|.++|||||+++++|||+|++.+|| .....||...+... |.+..+|.||+|||||.| .|.|
T Consensus 1230 ~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI----~~~~~~dg~~~~~~----~~s~~~~~Qm~GRAGR~g~d~~G~a 1301 (1724)
T 4f92_B 1230 LVEQLFSSGAIQVVVASRSLCWGMNVAAHLVII----MDTQYYNGKIHAYV----DYPIYDVLQMVGHANRPLQDDEGRC 1301 (1724)
T ss_dssp HHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEE----ECSEEEETTTTEEE----ECCHHHHHHHHTTBCCTTTCSCEEE
T ss_pred HHHHHHHCCCCeEEEEChHHHcCCCCCccEEEE----ecCccccCcccccC----CCCHHHHHHhhccccCCCCCCceEE
Confidence 999999999999999999999999999999999 44567777655433 899999999999999998 5999
Q ss_pred EEeccCccccccCCCCCccchhccC----chHHHHHHHHcCCC-CC------CcCCC---------------------CC
Q 048746 465 FRLYTLHNYHKDMDDNTVPEIQRTN----LANVVLILKSLGID-DL------VNFDF---------------------ID 512 (755)
Q Consensus 465 ~~l~~~~~~~~~l~~~~~pei~r~~----l~~~~L~l~~~~~~-~~------~~~~~---------------------~~ 512 (755)
+.++.+.+..........|+...+. +...++.....|.- +. ....| ++
T Consensus 1302 vll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~ 1381 (1724)
T 4f92_B 1302 VIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLS 1381 (1724)
T ss_dssp EEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHH
T ss_pred EEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHH
Confidence 9998765431110111222323333 33444444443321 10 00001 11
Q ss_pred CCcHHHHHHHHHHHHHccCcc--CCC--CCCHHHHHhhcCCCChhhHHHHHhcccccch-HHHHhhhcccccccccccCC
Q 048746 513 PPPEEALLKALELLFALSALN--KLG--ELTKVGRRMAEFPLDPMLSKMIVASDKDKCS-DEIITIAAMLSVGNSIFYRP 587 (755)
Q Consensus 513 ~p~~~~i~~a~~~L~~~g~l~--~~~--~lT~lG~~~~~~pl~p~~~~~l~~~~~~~c~-~~~~~i~a~ls~~~~~f~~~ 587 (755)
....+.++.+++.|.+.|+|. +++ .+|++|+++++++++|..++++..+...++. ..++.+.|...+...+.+|.
T Consensus 1382 ~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~i~~R~ 1461 (1724)
T 4f92_B 1382 DHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRH 1461 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTTCCCCT
T ss_pred HHHHHHHHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhcCCcccccccccc
Confidence 123456788999999999995 334 3799999999999999999999988776654 56788888777777777887
Q ss_pred cchHHHHH
Q 048746 588 KDKQVHAD 595 (755)
Q Consensus 588 ~~~~~~~~ 595 (755)
.+.....+
T Consensus 1462 ~E~~~l~~ 1469 (1724)
T 4f92_B 1462 HEDNLLRQ 1469 (1724)
T ss_dssp THHHHHHH
T ss_pred cHHHHHHH
Confidence 66544333
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=7.6e-44 Score=403.40 Aligned_cols=335 Identities=16% Similarity=0.193 Sum_probs=143.5
Q ss_pred ccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcC--CeEEEEccCCCchhccHHHHHHHhccc--CCCccccC
Q 048746 106 LHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEY--QVLVIVGETGSGKTTQIPQYLHEAGYT--KQGKVGCT 181 (755)
Q Consensus 106 ~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~--~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~ 181 (755)
...+|.++++++.+++.+.+.++..| +++|.++++.+..+ ++++++||||||||.+....++..... .+++++|+
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p-~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil 168 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRP-SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSC-CHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEE
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEE
Confidence 35689999999999999999999998 99999999999886 999999999999995544444443222 23489999
Q ss_pred ccHHHHHHHHHHHHHHHhCCccccEEeeeeeccc---cCCCCceEEEeCcHHHHHHHhCCC--CCCCCCceEeecccccC
Q 048746 182 QPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED---CTSEKTILKYMTDGMLLREILSEP--NLESYSVLMVDEAHERT 256 (755)
Q Consensus 182 ~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~---~~~~~~~I~v~T~g~Ll~~l~~~~--~l~~~~~vIiDEaHer~ 256 (755)
+|+|+||.|+++.+.+......+..+++...... ......+|+|+||++|++++.... .+.++++||||||| +.
T Consensus 169 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah-~~ 247 (479)
T 3fmp_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD-VM 247 (479)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHH-HH
T ss_pred eChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHH-HH
Confidence 9999999999988887654333334444333322 223456899999999999996643 56899999999999 55
Q ss_pred Cc-cchHHHHHHHHHhcCCCcEEEEeccCCCHH--HHHhhhCCCCE-EEecCc---cccceEEEecCCccchHHHHHHHH
Q 048746 257 LS-TDILFGLLKDLIKFRSDLKLLISSATLDAE--KFSDYFGSAPI-FKIPGR---RYPVEIHYTKAPEADYIDAAIVTV 329 (755)
Q Consensus 257 ~~-~d~~~~~l~~~~~~~~~~~~il~SAT~~~~--~l~~~~~~~~~-~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~ 329 (755)
.. ..+...........+++.++|++|||++.+ .+...+...+. +.+... ...+...+...+.... ....+
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l 324 (479)
T 3fmp_B 248 IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE---KFQAL 324 (479)
T ss_dssp HTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------------
T ss_pred hhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHH---HHHHH
Confidence 54 345444444444466789999999999654 44444443333 333222 1223333333322211 22233
Q ss_pred HHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccc
Q 048746 330 LQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAET 409 (755)
Q Consensus 330 ~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~ 409 (755)
..+......+++||||++++.++.++..|.... ..+..+||+|++.+|..+++.|++|..+|||||+++++
T Consensus 325 ~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~---------~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~ 395 (479)
T 3fmp_B 325 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEG---------HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCAR 395 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhccCCceEEEeCcHHHHHHHHHHHHhCC---------ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcccccc
Confidence 333344456799999999999999999998743 67888999999999999999999999999999999999
Q ss_pred cCcCCCeeEEEeCCCcccccccCCCCcccccccc------cCHHhHHhhhcccCCCCC-CEEEEeccCcc
Q 048746 410 SLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHP------ISKASAMQRAGRSGRTGP-GKCFRLYTLHN 472 (755)
Q Consensus 410 Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p------~s~~~~~QR~GRaGR~g~-G~~~~l~~~~~ 472 (755)
|||+|++++||++|+ | .+..+|+||+|||||.|. |.|+.|++..+
T Consensus 396 GlDip~v~~VI~~d~------------------p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 396 GIDVEQVSVVINFDL------------------PVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CCccccCCEEEEecC------------------CCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 999999999999998 6 577899999999999985 99999998654
No 15
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-43 Score=432.64 Aligned_cols=345 Identities=15% Similarity=0.173 Sum_probs=258.4
Q ss_pred cCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHH
Q 048746 109 ELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAA 188 (755)
Q Consensus 109 ~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la 188 (755)
.|...++++.....+ ...+.++++++|.++++++.++++++++||||||||+++...++.. ...+++++|++|||+|+
T Consensus 163 ~~~~~~l~~~~~~~~-~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~-l~~g~rvlvl~PtraLa 240 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNE-ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS-LKNKQRVIYTSPIKALS 240 (1108)
T ss_dssp CCCSSTTTTTCCCSC-SSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHH-HHTTCEEEEEESSHHHH
T ss_pred CcccCCCChhhhHHH-HHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH-HhcCCeEEEEcCcHHHH
Confidence 455455444444333 3346667799999999999999999999999999997666555544 24567999999999999
Q ss_pred HHHHHHHHHHhCCccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCCccchHHHHHH
Q 048746 189 MSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTLSTDILFGLLK 267 (755)
Q Consensus 189 ~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~~~d~~~~~l~ 267 (755)
.|+++++.+.++ .+|...| +......++|+|+|||+|.+++..+. .+.++++||||||| +..+.++...+..
T Consensus 241 ~Q~~~~l~~~~~-~VglltG-----d~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~~~e~ 313 (1108)
T 3l9o_A 241 NQKYRELLAEFG-DVGLMTG-----DITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVVWEE 313 (1108)
T ss_dssp HHHHHHHHHHTS-SEEEECS-----SCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CccEEeC-----ccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh-hccccchHHHHHH
Confidence 999999999877 4443333 44455678999999999999987765 48899999999999 7777776666666
Q ss_pred HHHhcCCCcEEEEeccCC-CHHHHHhhhCC-----CCEEEecCccccceEEEecCCcc----------c-----hH----
Q 048746 268 DLIKFRSDLKLLISSATL-DAEKFSDYFGS-----APIFKIPGRRYPVEIHYTKAPEA----------D-----YI---- 322 (755)
Q Consensus 268 ~~~~~~~~~~~il~SAT~-~~~~l~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~----------~-----~~---- 322 (755)
.+...+++.++|+||||+ +...+++|+.. ..++....+..|+..++...... . +.
T Consensus 314 ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~ 393 (1108)
T 3l9o_A 314 TIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMA 393 (1108)
T ss_dssp HHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHT
T ss_pred HHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHH
Confidence 666678899999999999 66677777542 34555566777776655432110 0 00
Q ss_pred --------------------------------HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCC---
Q 048746 323 --------------------------------DAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGS--- 367 (755)
Q Consensus 323 --------------------------------~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~--- 367 (755)
...+..++..+.....+++||||++++.|+.++..|.........
T Consensus 394 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~ 473 (1108)
T 3l9o_A 394 SISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKE 473 (1108)
T ss_dssp TC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----
T ss_pred HHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHH
Confidence 223334455555566789999999999999999988653211100
Q ss_pred ------------------CCC---------ceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEE
Q 048746 368 ------------------KIA---------ELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVI 420 (755)
Q Consensus 368 ------------------~~~---------~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VI 420 (755)
..+ ...+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||
T Consensus 474 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI 553 (1108)
T 3l9o_A 474 ALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVF 553 (1108)
T ss_dssp CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEE
T ss_pred HHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEE
Confidence 000 01278899999999999999999999999999999999999999999999
Q ss_pred eCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC---CCEEEEeccCcc
Q 048746 421 DPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG---PGKCFRLYTLHN 472 (755)
Q Consensus 421 d~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g---~G~~~~l~~~~~ 472 (755)
+++. .||... ..|.|..+|+||+|||||.| .|.||.++++..
T Consensus 554 ~~~~----~~d~~~------~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 554 TSVR----KWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp SCSE----EESSSC------EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred ecCc----ccCccc------cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 8765 344332 23889999999999999999 799999998763
No 16
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=6e-42 Score=431.30 Aligned_cols=453 Identities=16% Similarity=0.179 Sum_probs=309.2
Q ss_pred ChHHHHHHHHHH-HcCCeEEEEccCCCchhccHHHHHHHhcc----------cCCCccccCccHHHHHHHHHHHHHHHhC
Q 048746 132 IYPYRDELLQAV-NEYQVLVIVGETGSGKTTQIPQYLHEAGY----------TKQGKVGCTQPRRVAAMSVAARVSQEMG 200 (755)
Q Consensus 132 l~~~Q~~~l~~i-~~~~~vii~apTGsGKT~~ip~~l~~~~~----------~~~~~ilv~~P~r~la~q~a~~~~~~~~ 200 (755)
++++|.++++.+ .++++++++||||||||..+...++.... ..+.+++|++|+|+||.|+++.+.+.++
T Consensus 80 ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~ 159 (1724)
T 4f92_B 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLA 159 (1724)
T ss_dssp CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHh
Confidence 499999999985 56899999999999999554444433211 1345899999999999999999988664
Q ss_pred ---CccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCC---CCCCCCceEeecccccCCccc---hHHHHHHHH--
Q 048746 201 ---VKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEP---NLESYSVLMVDEAHERTLSTD---ILFGLLKDL-- 269 (755)
Q Consensus 201 ---~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~---~l~~~~~vIiDEaHer~~~~d---~~~~~l~~~-- 269 (755)
..++...|- ..........++|+|+||+.+-..+.... .++++++|||||+| +++.+ .+..++.++
T Consensus 160 ~~gi~V~~~tGd-~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH--~l~d~RG~~lE~~l~rl~~ 236 (1724)
T 4f92_B 160 TYGITVAELTGD-HQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIH--LLHDDRGPVLEALVARAIR 236 (1724)
T ss_dssp TTTCCEEECCSS-CSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGG--GGGSTTHHHHHHHHHHHHH
T ss_pred hCCCEEEEEECC-CCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecch--hcCCccHHHHHHHHHHHHH
Confidence 333333331 11111122468999999999754443322 47889999999999 33333 223333322
Q ss_pred --HhcCCCcEEEEeccCC-CHHHHHhhhCCCC---EEEec--CccccceEEEecCCccchHH--HHH-HHHHH-HHhhCC
Q 048746 270 --IKFRSDLKLLISSATL-DAEKFSDYFGSAP---IFKIP--GRRYPVEIHYTKAPEADYID--AAI-VTVLQ-IHVTQS 337 (755)
Q Consensus 270 --~~~~~~~~~il~SAT~-~~~~l~~~~~~~~---~~~~~--~~~~~v~~~~~~~~~~~~~~--~~~-~~~~~-~~~~~~ 337 (755)
....+++|+|+||||+ |.+.+++|++..+ .+.+. .|+.|++.++.......... ... ..+.. +.....
T Consensus 237 ~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 316 (1724)
T 4f92_B 237 NIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAG 316 (1724)
T ss_dssp HHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhc
Confidence 2356789999999999 8999999998642 33333 34556666654433322211 111 11122 222334
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhcccCCC----------------------------CCceEEEeccCCCCHHHHHHH
Q 048746 338 PGDILVFLTGQEEIETADEILKHRTRGLGSK----------------------------IAELIICPIYANLPTELQAKI 389 (755)
Q Consensus 338 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~----------------------------~~~~~v~~lh~~l~~~~r~~i 389 (755)
++++||||+|++.++.+++.|.+........ .-...+..+||||++++|..+
T Consensus 317 ~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~v 396 (1724)
T 4f92_B 317 KNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLV 396 (1724)
T ss_dssp SCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHH
Confidence 6799999999999999999887654211100 001237889999999999999
Q ss_pred hCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC---CCEEEE
Q 048746 390 FEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG---PGKCFR 466 (755)
Q Consensus 390 ~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g---~G~~~~ 466 (755)
++.|++|.++|||||+++++|||+|++++|| .....||+..|... |.|..+|.||+|||||.| .|.++.
T Consensus 397 E~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI----~~~~~~~~~~~~~~----~ls~~~~~Qm~GRAGR~g~d~~G~~ii 468 (1724)
T 4f92_B 397 EDLFADKHIQVLVSTATLAWGVNLPAHTVII----KGTQVYSPEKGRWT----ELGALDILQMLGRAGRPQYDTKGEGIL 468 (1724)
T ss_dssp HHHHHTTCCCEEEECHHHHHHSCCCBSEEEE----ECCEEEETTTTEEE----ECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred HHHHHCCCCeEEEEcchhHhhCCCCCceEEE----eCCEEecCcCCCcc----cCCHHHHHHhhhhccCCCCCCccEEEE
Confidence 9999999999999999999999999999999 66778999887655 899999999999999998 599999
Q ss_pred eccCccccc--cCCCCCcc--chhccCchHHHHHHHHcCC-CCC----------------------Cc--------CCCC
Q 048746 467 LYTLHNYHK--DMDDNTVP--EIQRTNLANVVLILKSLGI-DDL----------------------VN--------FDFI 511 (755)
Q Consensus 467 l~~~~~~~~--~l~~~~~p--ei~r~~l~~~~L~l~~~~~-~~~----------------------~~--------~~~~ 511 (755)
+.++.+... .+.....| .-+...+.+.++....+|. .+. .. .+.+
T Consensus 469 ~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l 548 (1724)
T 4f92_B 469 ITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLL 548 (1724)
T ss_dssp EEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTC
T ss_pred EecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHH
Confidence 988765321 11111111 1111223333332222221 110 00 0122
Q ss_pred CCCcHHHHHHHHHHHHHccCccC---CC--CCCHHHHHhhcCCCChhhHHHHHhcccccch-HHHHhhhccccccccccc
Q 048746 512 DPPPEEALLKALELLFALSALNK---LG--ELTKVGRRMAEFPLDPMLSKMIVASDKDKCS-DEIITIAAMLSVGNSIFY 585 (755)
Q Consensus 512 ~~p~~~~i~~a~~~L~~~g~l~~---~~--~lT~lG~~~~~~pl~p~~~~~l~~~~~~~c~-~~~~~i~a~ls~~~~~f~ 585 (755)
+....+.+..++..|.+.|+|.. +| .+|++|+++|+++++|..++.+.......+. .+++.+.|+.++...+.+
T Consensus 549 ~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~ 628 (1724)
T 4f92_B 549 DQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITV 628 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCc
Confidence 22234567889999999999953 23 4899999999999999999999988776654 468888888888788888
Q ss_pred CCcchHHHHH
Q 048746 586 RPKDKQVHAD 595 (755)
Q Consensus 586 ~~~~~~~~~~ 595 (755)
|..++.....
T Consensus 629 R~~E~~~l~~ 638 (1724)
T 4f92_B 629 REEEKLELQK 638 (1724)
T ss_dssp CGGGHHHHHH
T ss_pred CHHHHHHHHH
Confidence 8766554433
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.7e-42 Score=375.00 Aligned_cols=330 Identities=20% Similarity=0.252 Sum_probs=259.2
Q ss_pred ccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcC-CeEEEEccCCCchhccHHHHHHHhccc-CCCccccCccHH
Q 048746 108 SELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEY-QVLVIVGETGSGKTTQIPQYLHEAGYT-KQGKVGCTQPRR 185 (755)
Q Consensus 108 ~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~-~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r 185 (755)
.+|+++++++.+++.+.+.++..| +++|.++++.+.++ +++++.||||||||+++...+...... .+.+++|++|++
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~-~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~ 84 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKP-TDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTR 84 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSC-CHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCH
T ss_pred CchhhcCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCH
Confidence 468888999999999999999888 99999999998887 799999999999996665555544322 356899999999
Q ss_pred HHHHHHHHHHHHHhCCccccEEeeeeeccc-----cCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCCcc
Q 048746 186 VAAMSVAARVSQEMGVKLGHEVGYSIRFED-----CTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTLST 259 (755)
Q Consensus 186 ~la~q~a~~~~~~~~~~~g~~vg~~~~~~~-----~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~~~ 259 (755)
+|+.|+++++.+..+.. +..++....... ......+|+|+||+.|.+.+.... .+.++++||+|||| +....
T Consensus 85 ~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah-~~~~~ 162 (367)
T 1hv8_A 85 ELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD-EMLNM 162 (367)
T ss_dssp HHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH-HHHTT
T ss_pred HHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch-Hhhhh
Confidence 99999999999876532 111221111111 111257899999999999887654 58899999999999 55555
Q ss_pred chHHHHHHHHHhcCCCcEEEEeccCCCHH---HHHhhhCCCCEEEecCccccceEEEecCCccchHHHHHHHHHHHHhhC
Q 048746 260 DILFGLLKDLIKFRSDLKLLISSATLDAE---KFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQ 336 (755)
Q Consensus 260 d~~~~~l~~~~~~~~~~~~il~SAT~~~~---~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (755)
++...+.+.+....++.++++||||++.. .+..+++....+ .......+...+......+.... +..+.. .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----l~~~l~-~ 236 (367)
T 1hv8_A 163 GFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFI-KAKINANIEQSYVEVNENERFEA----LCRLLK-N 236 (367)
T ss_dssp TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEE-ECCSSSSSEEEEEECCGGGHHHH----HHHHHC-S
T ss_pred chHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEE-EecCCCCceEEEEEeChHHHHHH----HHHHHh-c
Confidence 66666555555567889999999999654 334555443332 23334456666666555555443 333332 4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCe
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGI 416 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v 416 (755)
.++++||||+++++++.+++.|.+.+ ..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~---------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~ 307 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIG---------FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDL 307 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTT---------CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcC---------CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccC
Confidence 57899999999999999999998843 678899999999999999999999999999999999999999999
Q ss_pred eEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 417 KYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 417 ~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
++||+++. |.|..+|.||+||+||.| +|.|+.++++.++
T Consensus 308 ~~Vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 347 (367)
T 1hv8_A 308 NCVINYHL------------------PQNPESYMHRIGRTGRAGKKGKAISIINRREY 347 (367)
T ss_dssp SEEEESSC------------------CSCHHHHHHHSTTTCCSSSCCEEEEEECTTSH
T ss_pred CEEEEecC------------------CCCHHHhhhcccccccCCCccEEEEEEcHHHH
Confidence 99999999 999999999999999998 6999999998765
No 18
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.8e-41 Score=373.32 Aligned_cols=332 Identities=14% Similarity=0.147 Sum_probs=252.2
Q ss_pred ccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcc--cCCCccccCccHH
Q 048746 108 SELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGY--TKQGKVGCTQPRR 185 (755)
Q Consensus 108 ~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~ilv~~P~r 185 (755)
.+|+++++++.+++.+.+.++..| +++|.++++.+..++++++++|||||||......++.... ..+.+++|++|++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 86 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHP-SEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 86 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSC-CHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCH
Confidence 468888999999999999988877 9999999999999999999999999999554433333311 2345899999999
Q ss_pred HHHHHHHHHHHHHhCCccccEEeeeeeccc-------cCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCC
Q 048746 186 VAAMSVAARVSQEMGVKLGHEVGYSIRFED-------CTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTL 257 (755)
Q Consensus 186 ~la~q~a~~~~~~~~~~~g~~vg~~~~~~~-------~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~ 257 (755)
+|+.|+++.+.+......+..++....... ......+|+|+||++|...+.... .+.++++||||||| +..
T Consensus 87 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH-~~~ 165 (391)
T 1xti_A 87 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD-KML 165 (391)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH-HHT
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH-HHh
Confidence 999999999888643222223332211111 011346899999999999887654 68899999999999 444
Q ss_pred c-cchHHHHHHHHHhcCCCcEEEEeccCCCH--HHH-HhhhCCCCEEEecCc----cccceEEEecCCccchHHHHHHHH
Q 048746 258 S-TDILFGLLKDLIKFRSDLKLLISSATLDA--EKF-SDYFGSAPIFKIPGR----RYPVEIHYTKAPEADYIDAAIVTV 329 (755)
Q Consensus 258 ~-~d~~~~~l~~~~~~~~~~~~il~SAT~~~--~~l-~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~ 329 (755)
. .++...+...+....++.++++||||++. ..+ ..++.....+.+... ...+...+...+..+... .+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l 241 (391)
T 1xti_A 166 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNR----KL 241 (391)
T ss_dssp SSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHH----HH
T ss_pred hccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHH----HH
Confidence 4 45555555555456678999999999943 333 344443323333222 123455555555444433 23
Q ss_pred HHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccc
Q 048746 330 LQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAET 409 (755)
Q Consensus 330 ~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~ 409 (755)
..+......+++||||+++++++.+++.|.+.+ +.+..+||++++++|..+++.|++|..+|||||+++++
T Consensus 242 ~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~---------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~ 312 (391)
T 1xti_A 242 FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN---------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 312 (391)
T ss_dssp HHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTT---------CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSS
T ss_pred HHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCC---------CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhc
Confidence 333334467899999999999999999998843 67889999999999999999999999999999999999
Q ss_pred cCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCcc
Q 048746 410 SLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHN 472 (755)
Q Consensus 410 Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~ 472 (755)
|+|+|++++||+++. |.|..+|+||+||+||.| +|.|+.++++.+
T Consensus 313 Gidi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 313 GMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp CBCCTTEEEEEESSC------------------CSSHHHHHHHHCBCSSSCCCCEEEEEECSHH
T ss_pred CCCcccCCEEEEeCC------------------CCCHHHHHHhcccccCCCCceEEEEEEcccc
Confidence 999999999999999 999999999999999998 599999998764
No 19
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=7.1e-42 Score=393.20 Aligned_cols=328 Identities=16% Similarity=0.155 Sum_probs=244.3
Q ss_pred CCCccchHHHHHHHH-HhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHH
Q 048746 111 PDKSKEKSALEMLQE-ERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVA 187 (755)
Q Consensus 111 ~~~~~~~~~~~~l~~-~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~l 187 (755)
.++++++.+.+.|.+ +++..| +++|.++++.+.+++++++++|||+||| +++|.+. ..++++|++|+++|
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~-rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L 96 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKF-RPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISL 96 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSC-CTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHH
T ss_pred ccCCCCHHHHHHHHHHhCCCCC-CHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHH
Confidence 346677888888888 477777 9999999999999999999999999999 5666653 24689999999999
Q ss_pred HHHHHHHHHHHhCCccccEEeeeeeccc--------cCCCCceEEEeCcHHHH------HHHhCCCCCCCCCceEeeccc
Q 048746 188 AMSVAARVSQEMGVKLGHEVGYSIRFED--------CTSEKTILKYMTDGMLL------REILSEPNLESYSVLMVDEAH 253 (755)
Q Consensus 188 a~q~a~~~~~~~~~~~g~~vg~~~~~~~--------~~~~~~~I~v~T~g~Ll------~~l~~~~~l~~~~~vIiDEaH 253 (755)
+.|+++.+.+ +|..++...|.....+. ......+|+|+||++|. +.+.....+.++++|||||||
T Consensus 97 ~~q~~~~l~~-~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH 175 (591)
T 2v1x_A 97 MEDQLMVLKQ-LGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVH 175 (591)
T ss_dssp HHHHHHHHHH-HTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGG
T ss_pred HHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcc
Confidence 9999999987 46655433332111110 02457899999999774 233333346789999999999
Q ss_pred ccCCc-cchHHHH--HHHHHhcCCCcEEEEeccCCCHH---HHHhhhCCCCEEEecCccccceEEEecCCccchHHHHHH
Q 048746 254 ERTLS-TDILFGL--LKDLIKFRSDLKLLISSATLDAE---KFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADYIDAAIV 327 (755)
Q Consensus 254 er~~~-~d~~~~~--l~~~~~~~~~~~~il~SAT~~~~---~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 327 (755)
..+-+ .+|...+ +..+....++.++|+||||++.. .+.+++.......+........+.|............+.
T Consensus 176 ~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~ 255 (591)
T 2v1x_A 176 CCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIE 255 (591)
T ss_dssp GGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHH
Confidence 43321 1222221 23445566789999999999653 556666544333333222222333332222222333444
Q ss_pred HHHHHHhh-CCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCc
Q 048746 328 TVLQIHVT-QSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNI 406 (755)
Q Consensus 328 ~~~~~~~~-~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i 406 (755)
.+..+... ..++++||||+++++++.+++.|...+ +.+..+||+|++++|..+++.|++|..+|||||++
T Consensus 256 ~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g---------~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a 326 (591)
T 2v1x_A 256 DIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLG---------IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA 326 (591)
T ss_dssp HHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTT---------CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT
T ss_pred HHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCC---------CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech
Confidence 45554432 356899999999999999999998843 77899999999999999999999999999999999
Q ss_pred ccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 407 AETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 407 ~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
+++|||+|+|++||++++ |.|.++|.||+|||||.| +|.|+.+|+..+.
T Consensus 327 ~~~GID~p~V~~VI~~~~------------------p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~ 376 (591)
T 2v1x_A 327 FGMGIDKPDVRFVIHHSM------------------SKSMENYYQESGRAGRDDMKADCILYYGFGDI 376 (591)
T ss_dssp SCTTCCCSCEEEEEESSC------------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred hhcCCCcccccEEEEeCC------------------CCCHHHHHHHhccCCcCCCCceEEEEEChHHH
Confidence 999999999999999999 999999999999999998 6999999987654
No 20
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3e-42 Score=379.82 Aligned_cols=338 Identities=16% Similarity=0.248 Sum_probs=142.3
Q ss_pred ccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcc--cCCCccccC
Q 048746 104 DELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGY--TKQGKVGCT 181 (755)
Q Consensus 104 ~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~ilv~ 181 (755)
+.+..+|+++++++.+++.+.+.++..| +++|.++++.+.+++++++++|||||||.+....++.... ..+++++|+
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil 95 (394)
T 1fuu_A 17 DKVVYKFDDMELDENLLRGVFGYGFEEP-SAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALML 95 (394)
T ss_dssp CCCCCSSGGGCCCHHHHHHHHHHTCCSC-CHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred ccccCChhhcCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 3455679999999999999999998888 9999999999999999999999999999554333333222 235689999
Q ss_pred ccHHHHHHHHHHHHHHHhC---CccccEEeeeeeccc-cCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccC
Q 048746 182 QPRRVAAMSVAARVSQEMG---VKLGHEVGYSIRFED-CTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERT 256 (755)
Q Consensus 182 ~P~r~la~q~a~~~~~~~~---~~~g~~vg~~~~~~~-~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~ 256 (755)
+|+++|+.|+++++.+... ..++...|.....+. .....++|+|+||+.|++.+.... .+.++++||+|||| +.
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah-~~ 174 (394)
T 1fuu_A 96 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD-EM 174 (394)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-HH
T ss_pred cCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChH-Hh
Confidence 9999999999998887532 222222221111000 011257899999999999886654 57889999999999 55
Q ss_pred CccchHHHHHHHHHhcCCCcEEEEeccCCCHH---HHHhhhCCCCEEEecCcc---ccceEEEecCCccchHHHHHHHHH
Q 048746 257 LSTDILFGLLKDLIKFRSDLKLLISSATLDAE---KFSDYFGSAPIFKIPGRR---YPVEIHYTKAPEADYIDAAIVTVL 330 (755)
Q Consensus 257 ~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~~---~l~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~ 330 (755)
...++...+...+....+..++++||||++.. .+..++.....+.+.... ..+...+......++... .+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~ 251 (394)
T 1fuu_A 175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYE---CLT 251 (394)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred hCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHH---HHH
Confidence 55556655556655677889999999999653 334444433223322221 122333333322222222 222
Q ss_pred HHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCccccc
Q 048746 331 QIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETS 410 (755)
Q Consensus 331 ~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~G 410 (755)
.+......+++||||+++++++.+++.|.+. ++.+..+||++++++|..+++.|++|..+|||||+++++|
T Consensus 252 ~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 322 (394)
T 1fuu_A 252 DLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 322 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCCcEEEEECCHHHHHHHHHHHHHc---------CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcC
Confidence 3333335679999999999999999999874 3678889999999999999999999999999999999999
Q ss_pred CcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 411 LTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 411 idip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
+|+|++++||++|. |.+..+|+||+||+||.| +|.|+.++++.+.
T Consensus 323 ldi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 368 (394)
T 1fuu_A 323 IDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFGRKGVAINFVTNEDV 368 (394)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCcccCCEEEEeCC------------------CCCHHHHHHHcCcccCCCCCceEEEEEchhHH
Confidence 99999999999999 999999999999999998 6999999998765
No 21
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=9.9e-41 Score=386.32 Aligned_cols=332 Identities=18% Similarity=0.202 Sum_probs=242.6
Q ss_pred cchHHHHHHHHHhcCCCChHHHHHHHHHHH--cCCeEEEEccCCCchh--ccHHHHHH--Hhcc--cCCCccccCccHHH
Q 048746 115 KEKSALEMLQEERKTLPIYPYRDELLQAVN--EYQVLVIVGETGSGKT--TQIPQYLH--EAGY--TKQGKVGCTQPRRV 186 (755)
Q Consensus 115 ~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~--~~~~vii~apTGsGKT--~~ip~~l~--~~~~--~~~~~ilv~~P~r~ 186 (755)
+++.+++.+.+.++..| +++|.++++.+. .+++++++|||||||| +++|.+.. .... ..+.+++|++|||+
T Consensus 28 l~~~l~~~l~~~g~~~~-~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGL-TPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SCHHHHHHHHTTTCSSC-CHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCC-CHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHH
Confidence 78899999999988888 999999999998 7889999999999999 45554422 1111 12348999999999
Q ss_pred HHHHHHHHHHHHhC----CccccEEeeeeeccc-------cCCCCceEEEeCcHHHHHHHhCC--CCCCCCCceEeeccc
Q 048746 187 AAMSVAARVSQEMG----VKLGHEVGYSIRFED-------CTSEKTILKYMTDGMLLREILSE--PNLESYSVLMVDEAH 253 (755)
Q Consensus 187 la~q~a~~~~~~~~----~~~g~~vg~~~~~~~-------~~~~~~~I~v~T~g~Ll~~l~~~--~~l~~~~~vIiDEaH 253 (755)
||.|+++.+.+... ........ ...... .....++|+|+||++|++.+... ..+.++++|||||||
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~-~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 185 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVS-LVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD 185 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEE-ECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEE-EECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChH
Confidence 99999999988642 22111111 111111 01235789999999999888653 367889999999999
Q ss_pred ccCCccchHHHHHHH---HHhc----CCCcEEEEeccCCCH--HHHHhhhCCCCE-EEecCc-------cccceEEEecC
Q 048746 254 ERTLSTDILFGLLKD---LIKF----RSDLKLLISSATLDA--EKFSDYFGSAPI-FKIPGR-------RYPVEIHYTKA 316 (755)
Q Consensus 254 er~~~~d~~~~~l~~---~~~~----~~~~~~il~SAT~~~--~~l~~~~~~~~~-~~~~~~-------~~~v~~~~~~~ 316 (755)
+.++.++...+... +... .++.++++||||++. ..+...+...+. +.+... ...+...+...
T Consensus 186 -~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 264 (579)
T 3sqw_A 186 -RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 264 (579)
T ss_dssp -HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred -HhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEe
Confidence 66666554443332 2222 237899999999953 455555544433 222111 11233333322
Q ss_pred Cc-cchHHHHHHHHHHHHh-hCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCC
Q 048746 317 PE-ADYIDAAIVTVLQIHV-TQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTP 394 (755)
Q Consensus 317 ~~-~~~~~~~~~~~~~~~~-~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~ 394 (755)
+. .......+..+..... ..+++++||||+++..++.+++.|.+... .++.+..+||+|++.+|..+++.|+
T Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~------~~~~v~~~hg~~~~~~R~~~~~~F~ 338 (579)
T 3sqw_A 265 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFK 338 (579)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc------CCCcEEEecCCCCHHHHHHHHHHhh
Confidence 22 2223333333333333 25568999999999999999999988642 2477899999999999999999999
Q ss_pred CCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 395 EGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 395 ~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
+|..+|||||+++++|||+|+|++||++|+ |.+..+|+||+|||||.| +|.|+.++++.+.
T Consensus 339 ~g~~~vLVaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 400 (579)
T 3sqw_A 339 KDESGILVCTDVGARGMDFPNVHEVLQIGV------------------PSELANYIHRIGRTARSGKEGSSVLFICKDEL 400 (579)
T ss_dssp HCSSEEEEECGGGTSSCCCTTCCEEEEESC------------------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred cCCCeEEEEcchhhcCCCcccCCEEEEcCC------------------CCCHHHhhhhccccccCCCCceEEEEEcccHH
Confidence 999999999999999999999999999999 999999999999999999 5999999997653
No 22
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4.8e-41 Score=382.41 Aligned_cols=327 Identities=21% Similarity=0.271 Sum_probs=246.3
Q ss_pred cccCCCCccchHHHHHHHH-HhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCcc
Q 048746 107 HSELPDKSKEKSALEMLQE-ERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQP 183 (755)
Q Consensus 107 ~~~f~~~~~~~~~~~~l~~-~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P 183 (755)
+.+|+++++++.+.+.+.+ +++..| +++|.++++.+.+++++++++||||||| +++|.++. .+.++|++|
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~-r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P 73 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQF-RPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSP 73 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSC-CTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECS
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCC-CHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECC
Confidence 3578899999999999998 677666 9999999999999999999999999999 56776532 357999999
Q ss_pred HHHHHHHHHHHHHHHhCCccccEEeeeeec------cccCCCCceEEEeCcHHHHHHH-hCCCCCCCCCceEeecccccC
Q 048746 184 RRVAAMSVAARVSQEMGVKLGHEVGYSIRF------EDCTSEKTILKYMTDGMLLREI-LSEPNLESYSVLMVDEAHERT 256 (755)
Q Consensus 184 ~r~la~q~a~~~~~~~~~~~g~~vg~~~~~------~~~~~~~~~I~v~T~g~Ll~~l-~~~~~l~~~~~vIiDEaHer~ 256 (755)
+++|+.|+.+++.+ +|.......|..... ........+|+|+||++|.... .......++++|||||||..+
T Consensus 74 ~~aL~~q~~~~l~~-~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~ 152 (523)
T 1oyw_A 74 LISLMKDQVDQLQA-NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCIS 152 (523)
T ss_dssp CHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGC
T ss_pred hHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccC
Confidence 99999999999876 565543332211111 0112345799999999985221 111123688999999999443
Q ss_pred Cc-cchH--HHHHHHHHhcCCCcEEEEeccCCCHH---HHHhhhC-CCCEEEecCccccceEEEecCCccchHHHHHHHH
Q 048746 257 LS-TDIL--FGLLKDLIKFRSDLKLLISSATLDAE---KFSDYFG-SAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTV 329 (755)
Q Consensus 257 ~~-~d~~--~~~l~~~~~~~~~~~~il~SAT~~~~---~l~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 329 (755)
-. .+|. ...+..+....++.+++++|||++.. .+.++++ ..+.+.+.+...| .+.|...+..+... .+
T Consensus 153 ~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-~l~~~v~~~~~~~~----~l 227 (523)
T 1oyw_A 153 QWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYMLMEKFKPLD----QL 227 (523)
T ss_dssp TTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCT-TEEEEEEECSSHHH----HH
T ss_pred cCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCC-ceEEEEEeCCCHHH----HH
Confidence 22 1232 22334455566789999999999654 4555564 3455544443322 23333322333333 33
Q ss_pred HHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccc
Q 048746 330 LQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAET 409 (755)
Q Consensus 330 ~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~ 409 (755)
.......+++++||||+++++++.+++.|...+ +.+..+||+|++++|..+++.|++|+.+|||||+++++
T Consensus 228 ~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g---------~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~ 298 (523)
T 1oyw_A 228 MRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKG---------ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298 (523)
T ss_dssp HHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTT---------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred HHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCC---------CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence 333344457799999999999999999998853 67899999999999999999999999999999999999
Q ss_pred cCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 410 SLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 410 Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
|||+|+|++||++|+ |.|.++|.||+|||||.| +|.|+.+|++.+.
T Consensus 299 GiD~p~v~~VI~~~~------------------p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~ 345 (523)
T 1oyw_A 299 GINKPNVRFVVHFDI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (523)
T ss_dssp TTCCTTCCEEEESSC------------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred CCCccCccEEEEECC------------------CCCHHHHHHHhccccCCCCCceEEEEeCHHHH
Confidence 999999999999999 999999999999999999 6999999987665
No 23
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.2e-40 Score=385.04 Aligned_cols=332 Identities=18% Similarity=0.194 Sum_probs=241.8
Q ss_pred cchHHHHHHHHHhcCCCChHHHHHHHHHHH--cCCeEEEEccCCCchh--ccHHHHHH--Hhccc--CCCccccCccHHH
Q 048746 115 KEKSALEMLQEERKTLPIYPYRDELLQAVN--EYQVLVIVGETGSGKT--TQIPQYLH--EAGYT--KQGKVGCTQPRRV 186 (755)
Q Consensus 115 ~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~--~~~~vii~apTGsGKT--~~ip~~l~--~~~~~--~~~~ilv~~P~r~ 186 (755)
+++.+++.+.+.++..| +++|.++++.+. .+++++++|||||||| +++|.+.. ..... .+.+++|++|||+
T Consensus 79 l~~~l~~~l~~~g~~~~-~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGL-TPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSC-CHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCC-CHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 78889999988888777 999999999988 6789999999999999 45554322 22111 1348999999999
Q ss_pred HHHHHHHHHHHHhCC----ccccEEeeeeeccc-------cCCCCceEEEeCcHHHHHHHhCC--CCCCCCCceEeeccc
Q 048746 187 AAMSVAARVSQEMGV----KLGHEVGYSIRFED-------CTSEKTILKYMTDGMLLREILSE--PNLESYSVLMVDEAH 253 (755)
Q Consensus 187 la~q~a~~~~~~~~~----~~g~~vg~~~~~~~-------~~~~~~~I~v~T~g~Ll~~l~~~--~~l~~~~~vIiDEaH 253 (755)
||.|+++++.+..+. .....+. ...... .....++|+|+||++|++.+... ..+.++++|||||||
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 236 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVS-LVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD 236 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEE-ECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEE-EECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHH
Confidence 999999999885432 1111111 111111 01235789999999999887653 257889999999999
Q ss_pred ccCCccchHHHHHHH---HHhc----CCCcEEEEeccCCCH--HHHHhhhCCCCEE-EecCc-------cccceEEEecC
Q 048746 254 ERTLSTDILFGLLKD---LIKF----RSDLKLLISSATLDA--EKFSDYFGSAPIF-KIPGR-------RYPVEIHYTKA 316 (755)
Q Consensus 254 er~~~~d~~~~~l~~---~~~~----~~~~~~il~SAT~~~--~~l~~~~~~~~~~-~~~~~-------~~~v~~~~~~~ 316 (755)
+.++.++...+... +... .++.|+++||||++. ..+...+...+.. .+... ...+...+...
T Consensus 237 -~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (563)
T 3i5x_A 237 -RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 315 (563)
T ss_dssp -HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred -HHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEEC
Confidence 66665554433322 2222 347899999999953 5566655554432 22111 11222333222
Q ss_pred C-ccchHHHHHHHHHHHHh-hCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCC
Q 048746 317 P-EADYIDAAIVTVLQIHV-TQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTP 394 (755)
Q Consensus 317 ~-~~~~~~~~~~~~~~~~~-~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~ 394 (755)
. ........+..+..... ...++++||||++++.++.+++.|.+... .++.+..+||+|++.+|..+++.|+
T Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~------~~~~v~~~h~~~~~~~R~~~~~~f~ 389 (563)
T 3i5x_A 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFK 389 (563)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHH
T ss_pred chhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc------CCceEEEecCCCCHHHHHHHHHHHh
Confidence 2 22233333333333332 35578999999999999999999998642 2477899999999999999999999
Q ss_pred CCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 395 EGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 395 ~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
+|+.+|||||+++++|||+|+|++||++|+ |.+..+|+||+|||||.| +|.|+.++++.+.
T Consensus 390 ~g~~~vLvaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 451 (563)
T 3i5x_A 390 KDESGILVCTDVGARGMDFPNVHEVLQIGV------------------PSELANYIHRIGRTARSGKEGSSVLFICKDEL 451 (563)
T ss_dssp HCSSEEEEECGGGTSSCCCTTCCEEEEESC------------------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred cCCCCEEEEcchhhcCCCcccCCEEEEECC------------------CCchhhhhhhcCccccCCCCceEEEEEchhHH
Confidence 999999999999999999999999999999 999999999999999998 6999999997653
No 24
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=7e-40 Score=352.82 Aligned_cols=310 Identities=17% Similarity=0.182 Sum_probs=236.5
Q ss_pred chHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHH
Q 048746 116 EKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARV 195 (755)
Q Consensus 116 ~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~ 195 (755)
++.+.+.+.+.++..| +++|.++++.+.+++++++++|||||||......++.. +.+++|++|+++|+.|+++++
T Consensus 2 ~~~i~~~l~~~g~~~l-~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~~~~~ 76 (337)
T 2z0m_A 2 NEKIEQAIREMGFKNF-TEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQVASHI 76 (337)
T ss_dssp CHHHHHHHHHTTCCSC-CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHHHHHH
Confidence 5677888888888777 99999999999999999999999999996555555443 468999999999999999999
Q ss_pred HHHhCCccccEEeeeeeccc-----cCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCCccchHHHHHHHH
Q 048746 196 SQEMGVKLGHEVGYSIRFED-----CTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTLSTDILFGLLKDL 269 (755)
Q Consensus 196 ~~~~~~~~g~~vg~~~~~~~-----~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~~~d~~~~~l~~~ 269 (755)
.+.. ...+..++....... ......+|+|+||+.|.+.+.... .+.++++||+|||| +....++...+...+
T Consensus 77 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~~~~~~~~~~~ 154 (337)
T 2z0m_A 77 RDIG-RYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEAD-LMFEMGFIDDIKIIL 154 (337)
T ss_dssp HHHT-TTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHH-HHHHTTCHHHHHHHH
T ss_pred HHHh-hhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChH-HhhccccHHHHHHHH
Confidence 8743 222222222111111 111347899999999999886654 57899999999999 554555555544455
Q ss_pred HhcCCCcEEEEeccCCCHH---HHHhhhCCCCEEEecCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcC
Q 048746 270 IKFRSDLKLLISSATLDAE---KFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLT 346 (755)
Q Consensus 270 ~~~~~~~~~il~SAT~~~~---~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~ 346 (755)
.......++++||||++.. .+..++.....+........+...+........ . .........++++||||+
T Consensus 155 ~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~lvf~~ 228 (337)
T 2z0m_A 155 AQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDDWR-S-----KVQALRENKDKGVIVFVR 228 (337)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSSSH-H-----HHHHHHTCCCSSEEEECS
T ss_pred hhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChHHH-H-----HHHHHHhCCCCcEEEEEc
Confidence 5566778999999999654 455666554444333333344555544433221 1 123334456789999999
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcc
Q 048746 347 GQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSK 426 (755)
Q Consensus 347 ~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k 426 (755)
++++++.+++.|. .+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 229 ~~~~~~~l~~~l~-------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~-- 293 (337)
T 2z0m_A 229 TRNRVAKLVRLFD-------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDA-- 293 (337)
T ss_dssp CHHHHHHHHTTCT-------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSC--
T ss_pred CHHHHHHHHHHhh-------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecC--
Confidence 9999998887764 2567999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEecc
Q 048746 427 VKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYT 469 (755)
Q Consensus 427 ~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~ 469 (755)
|.|..+|+||+||+||.| +|.|+.++.
T Consensus 294 ----------------~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 294 ----------------PQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp ----------------CSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred ----------------CCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 999999999999999998 599999998
No 25
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=6e-41 Score=405.53 Aligned_cols=382 Identities=16% Similarity=0.206 Sum_probs=262.5
Q ss_pred cCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHh-CCccccE
Q 048746 128 KTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEM-GVKLGHE 206 (755)
Q Consensus 128 ~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~-~~~~g~~ 206 (755)
+.++++++|.++++.+.++++++++||||||||+.....+... ...+++++|++|+++|+.|+++++.+.+ +..++..
T Consensus 36 ~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~-~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l 114 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMA-HRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLI 114 (997)
T ss_dssp CSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH-HHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEE
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 4456799999999999999999999999999994322222221 2345689999999999999999998865 4444444
Q ss_pred EeeeeeccccCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 207 VGYSIRFEDCTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 207 vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
.| +......++|+|+||++|.+.+.... .+.++++||||||| +..+.++...+...+...+++.++|+||||+
T Consensus 115 ~G-----~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~ 188 (997)
T 4a4z_A 115 TG-----DVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFILLSATV 188 (997)
T ss_dssp CS-----SCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEEEEECCC
T ss_pred eC-----CCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc-cccccchHHHHHHHHHhcccCCCEEEEcCCC
Confidence 44 22344568999999999999886554 68899999999999 7766665555555666677889999999999
Q ss_pred -CHHHHHhhhCC-----CCEEEecCccccceEEEecCCc--------cc-----h-------------------------
Q 048746 286 -DAEKFSDYFGS-----APIFKIPGRRYPVEIHYTKAPE--------AD-----Y------------------------- 321 (755)
Q Consensus 286 -~~~~l~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~--------~~-----~------------------------- 321 (755)
+...|++|++. ..++..+.+..|+.+++..... .. +
T Consensus 189 ~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 268 (997)
T 4a4z_A 189 PNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGG 268 (997)
T ss_dssp TTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----------------
T ss_pred CChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccc
Confidence 88899999853 3356667778888766532110 00 0
Q ss_pred ---------------------------------------------------HHHHHHHHHHHHhhCCCCCEEEEcCCHHH
Q 048746 322 ---------------------------------------------------IDAAIVTVLQIHVTQSPGDILVFLTGQEE 350 (755)
Q Consensus 322 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~iLVF~~~~~~ 350 (755)
....+..++..+.....+++||||+++++
T Consensus 269 ~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~ 348 (997)
T 4a4z_A 269 STARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKR 348 (997)
T ss_dssp ------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHH
Confidence 00112344555555566899999999999
Q ss_pred HHHHHHHHHHhhcccC--------------CCC----------------CceEEEeccCCCCHHHHHHHhCCCCCCCcEE
Q 048746 351 IETADEILKHRTRGLG--------------SKI----------------AELIICPIYANLPTELQAKIFEPTPEGARKV 400 (755)
Q Consensus 351 ~~~l~~~L~~~~~~~~--------------~~~----------------~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~v 400 (755)
|+.++..|........ ... ....+..+||+|++.+|..+++.|++|.++|
T Consensus 349 ~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kV 428 (997)
T 4a4z_A 349 CEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKV 428 (997)
T ss_dssp HHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcE
Confidence 9999998854211000 000 0114788999999999999999999999999
Q ss_pred EEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC---CCEEEEeccCccccccC
Q 048746 401 VLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG---PGKCFRLYTLHNYHKDM 477 (755)
Q Consensus 401 lvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g---~G~~~~l~~~~~~~~~l 477 (755)
||||+++++|||+|++.+|+ ++. ..||... ..|.|..+|+||+|||||.| .|.||.++........+
T Consensus 429 LvAT~~~a~GIDiP~~~VVi-~~~---~k~dg~~------~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~ 498 (997)
T 4a4z_A 429 LFATETFAMGLNLPTRTVIF-SSI---RKHDGNG------LRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIAT 498 (997)
T ss_dssp EEECTHHHHSCCCCCSEEEE-SCS---EEEETTE------EEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHH
T ss_pred EEEchHhhCCCCCCCceEEE-ecc---ccccCcc------CCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHH
Confidence 99999999999999955555 444 2344431 22889999999999999988 69999999532221111
Q ss_pred -C--CCCccchhcc------CchHHHHHHHHcCCCCCCcCCCCCCCcHHHHHHHHHHH
Q 048746 478 -D--DNTVPEIQRT------NLANVVLILKSLGIDDLVNFDFIDPPPEEALLKALELL 526 (755)
Q Consensus 478 -~--~~~~pei~r~------~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~i~~a~~~L 526 (755)
. ....|+.+++ ++...+|++...++.++..+.|.+.+....+......|
T Consensus 499 ~~~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l 556 (997)
T 4a4z_A 499 FKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQI 556 (997)
T ss_dssp HHHHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 0 1123444444 22333334444444445555555544444443333333
No 26
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.3e-40 Score=378.05 Aligned_cols=302 Identities=22% Similarity=0.258 Sum_probs=224.0
Q ss_pred HHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCcc
Q 048746 124 QEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKL 203 (755)
Q Consensus 124 ~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~ 203 (755)
.+.+..+|++++|+++++++.++++++++||||||||+++++.+++. +.+++|++|||+||.|+++++++.++..+
T Consensus 210 l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----g~~vLVl~PTReLA~Qia~~l~~~~g~~v 285 (666)
T 3o8b_A 210 METTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----GYKVLVLNPSVAATLGFGAYMSKAHGIDP 285 (666)
T ss_dssp HHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----TCCEEEEESCHHHHHHHHHHHHHHHSCCC
T ss_pred hhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----CCeEEEEcchHHHHHHHHHHHHHHhCCCe
Confidence 34466789999999999999999999999999999999999888764 45899999999999999999999999888
Q ss_pred ccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcC--CCcEEEEe
Q 048746 204 GHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFR--SDLKLLIS 281 (755)
Q Consensus 204 g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~--~~~~~il~ 281 (755)
+..+|+.. ...+.+|+|+|||+|+. .....+.++++|||||||+ ++.++...+...+.... ....+++|
T Consensus 286 g~~vG~~~-----~~~~~~IlV~TPGrLl~--~~~l~l~~l~~lVlDEAH~--l~~~~~~~l~~Il~~l~~~~~~llil~ 356 (666)
T 3o8b_A 286 NIRTGVRT-----ITTGAPVTYSTYGKFLA--DGGCSGGAYDIIICDECHS--TDSTTILGIGTVLDQAETAGARLVVLA 356 (666)
T ss_dssp EEECSSCE-----ECCCCSEEEEEHHHHHH--TTSCCTTSCSEEEETTTTC--CSHHHHHHHHHHHHHTTTTTCSEEEEE
T ss_pred eEEECcEe-----ccCCCCEEEECcHHHHh--CCCcccCcccEEEEccchh--cCccHHHHHHHHHHhhhhcCCceEEEE
Confidence 87777543 34678999999999843 2233677899999999994 44455443333333333 33347888
Q ss_pred ccCCCHHHHHhhhCCCCEEEecCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHh
Q 048746 282 SATLDAEKFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHR 361 (755)
Q Consensus 282 SAT~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~ 361 (755)
|||++.. +. .....+..+.-. +.-.+.+.. .... ......+++||||+++++++.+++.|++.
T Consensus 357 SAT~~~~-i~--~~~p~i~~v~~~-~~~~i~~~~--~~~~-----------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~ 419 (666)
T 3o8b_A 357 TATPPGS-VT--VPHPNIEEVALS-NTGEIPFYG--KAIP-----------IEAIRGGRHLIFCHSKKKCDELAAKLSGL 419 (666)
T ss_dssp ESSCTTC-CC--CCCTTEEEEECB-SCSSEEETT--EEEC-----------GGGSSSSEEEEECSCHHHHHHHHHHHHTT
T ss_pred CCCCCcc-cc--cCCcceEEEeec-ccchhHHHH--hhhh-----------hhhccCCcEEEEeCCHHHHHHHHHHHHhC
Confidence 9999542 10 000111111100 000011110 0000 11224789999999999999999999874
Q ss_pred hcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCccccc----ccCCCCcc
Q 048746 362 TRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKS----YNPRTGME 437 (755)
Q Consensus 362 ~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~----~~~~~~~~ 437 (755)
++.+..+||+|++++ |+++..+||||||++++|||+| |++|||+|+.+... |||..|+.
T Consensus 420 ---------g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 420 ---------GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp ---------TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred ---------CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 377899999999864 4456679999999999999998 99999999877665 56777775
Q ss_pred cccccccCHHhHHhhhcccCCCCCCEEEEeccCcccc
Q 048746 438 SLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNYH 474 (755)
Q Consensus 438 ~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~~ 474 (755)
.+ ..|.|.++|+||+|||||.++|. |.||++.+..
T Consensus 483 ~~-~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 483 TT-TVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERP 517 (666)
T ss_dssp EE-EEECBHHHHHHHHTTBCSSSCEE-EEESCCCCBC
T ss_pred cc-cCcCCHHHHHHHhccCCCCCCCE-EEEEecchhh
Confidence 53 56999999999999999955799 9999987653
No 27
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2.9e-40 Score=369.85 Aligned_cols=299 Identities=18% Similarity=0.225 Sum_probs=219.6
Q ss_pred CCChHHHHHHHHHHHcCCe-EEEEccCCCchhcc-HHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEE
Q 048746 130 LPIYPYRDELLQAVNEYQV-LVIVGETGSGKTTQ-IPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEV 207 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~~~-vii~apTGsGKT~~-ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~v 207 (755)
.| +++|+ +++.+.++++ ++++||||||||++ ++.++... ...+++++|++|||+||.|+++.+. |..+
T Consensus 4 q~-~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~-~~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v 73 (451)
T 2jlq_A 4 MG-EPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREA-LLRRLRTLILAPTRVVAAEMEEALR-------GLPI 73 (451)
T ss_dssp CC-SCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHH-HHTTCCEEEEESSHHHHHHHHHHTT-------TSCE
T ss_pred CC-CCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHH-HhcCCcEEEECCCHHHHHHHHHHhc-------Ccee
Confidence 44 56665 5777666555 59999999999964 44443332 3345699999999999999998763 3344
Q ss_pred eeeeeccc-cCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCC
Q 048746 208 GYSIRFED-CTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLD 286 (755)
Q Consensus 208 g~~~~~~~-~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~ 286 (755)
++...... ....++.|.++|+|.+.+.+...+.+.++++|||||||++....+....++.. ....++.++++||||++
T Consensus 74 ~~~~~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~-~~~~~~~~~i~~SAT~~ 152 (451)
T 2jlq_A 74 RYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYIST-RVEMGEAAAIFMTATPP 152 (451)
T ss_dssp EECCTTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHH-HHHTTSCEEEEECSSCT
T ss_pred eeeeccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHH-hhcCCCceEEEEccCCC
Confidence 55444332 33456789999999999999888889999999999999543333333333322 12456899999999996
Q ss_pred HHHHHhhhCCCCEEEecCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccC
Q 048746 287 AEKFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLG 366 (755)
Q Consensus 287 ~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~ 366 (755)
.+....++.+.+++.+. +..|... |.. . ..... ...+++||||+++++++.+++.|.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~-~~~p~~~-~~~-----~--------~~~l~-~~~~~~lVF~~s~~~a~~l~~~L~~~----- 211 (451)
T 2jlq_A 153 GSTDPFPQSNSPIEDIE-REIPERS-WNT-----G--------FDWIT-DYQGKTVWFVPSIKAGNDIANCLRKS----- 211 (451)
T ss_dssp TCCCSSCCCSSCEEEEE-CCCCSSC-CSS-----S--------CHHHH-HCCSCEEEECSSHHHHHHHHHHHHTT-----
T ss_pred ccchhhhcCCCceEecC-ccCCchh-hHH-----H--------HHHHH-hCCCCEEEEcCCHHHHHHHHHHHHHc-----
Confidence 65444444444544433 2233111 110 0 01111 13679999999999999999999874
Q ss_pred CCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccc---cc
Q 048746 367 SKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLV---HP 443 (755)
Q Consensus 367 ~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~---~p 443 (755)
++.+..+||++. .++++.|++|+.+|||||+++++|||+|+ ++|||+|+.+...|| ..+...+.. .|
T Consensus 212 ----g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p 281 (451)
T 2jlq_A 212 ----GKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIP 281 (451)
T ss_dssp ----TCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEE
T ss_pred ----CCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeeccccc
Confidence 367889999753 57899999999999999999999999999 999999999999888 556666665 79
Q ss_pred cCHHhHHhhhcccCCCC--CCEEEEeccC
Q 048746 444 ISKASAMQRAGRSGRTG--PGKCFRLYTL 470 (755)
Q Consensus 444 ~s~~~~~QR~GRaGR~g--~G~~~~l~~~ 470 (755)
.|.++|+||+|||||.| +|.||.++..
T Consensus 282 ~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 282 VTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999 6899888753
No 28
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-40 Score=379.27 Aligned_cols=337 Identities=13% Similarity=0.197 Sum_probs=212.1
Q ss_pred cccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcC--CeEEEEccCCCchhccHHHHHHHhccc--CCCcccc
Q 048746 105 ELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEY--QVLVIVGETGSGKTTQIPQYLHEAGYT--KQGKVGC 180 (755)
Q Consensus 105 ~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~--~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv 180 (755)
.....|...++++.+++.+.+.++..| +++|.++++.+.++ ++++++||||||||.+....++..... .+++++|
T Consensus 116 ~~l~~~~~~~l~~~~~~~l~~~g~~~p-~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLv 194 (508)
T 3fho_A 116 XXXXXXXXXXXXXXXXXXXXXXXXXXX-XKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAIC 194 (508)
T ss_dssp -----------------------CEEC-CCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEE
T ss_pred cccccccccccccccccccccccccCc-HHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEE
Confidence 334456666778888888888888777 99999999999987 999999999999996555444443222 2458999
Q ss_pred CccHHHHHHHHHHHHHHHhCC-ccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCCc
Q 048746 181 TQPRRVAAMSVAARVSQEMGV-KLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTLS 258 (755)
Q Consensus 181 ~~P~r~la~q~a~~~~~~~~~-~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~~ 258 (755)
++|+++|+.|+++++.+..+. .+....++...........++|+|+||++|.+.+.... .+.++++|||||||...-.
T Consensus 195 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~ 274 (508)
T 3fho_A 195 LAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQ 274 (508)
T ss_dssp ECSCHHHHHHHHHHHHHHSTTSSCCEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC
T ss_pred EECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhccc
Confidence 999999999999999886532 22222232222222233468999999999999887654 6889999999999943332
Q ss_pred cchHHHHHHHHHhcCCCcEEEEeccCCC--HHHHHhhhCCCCE-EEecCccc---cceEEEecCCccchHHHHHHHHHHH
Q 048746 259 TDILFGLLKDLIKFRSDLKLLISSATLD--AEKFSDYFGSAPI-FKIPGRRY---PVEIHYTKAPEADYIDAAIVTVLQI 332 (755)
Q Consensus 259 ~d~~~~~l~~~~~~~~~~~~il~SAT~~--~~~l~~~~~~~~~-~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~ 332 (755)
.++...+.......+++.++|+||||++ .+.+...+...+. +.+..... .+...+........ ....+..+
T Consensus 275 ~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---k~~~l~~l 351 (508)
T 3fho_A 275 QGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEH---KYNVLVEL 351 (508)
T ss_dssp --CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHH---HHHHHHHH
T ss_pred CCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHH---HHHHHHHH
Confidence 4455555555555677899999999995 4566665554443 33332222 23333333322222 22234444
Q ss_pred HhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCc
Q 048746 333 HVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLT 412 (755)
Q Consensus 333 ~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gid 412 (755)
......+++||||+++++++.++..|.+. +..+..+||++++.+|..+++.|++|..+|||||+++++|+|
T Consensus 352 l~~~~~~~~LVF~~s~~~a~~l~~~L~~~---------~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiD 422 (508)
T 3fho_A 352 YGLLTIGQSIIFCKKKDTAEEIARRMTAD---------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGID 422 (508)
T ss_dssp HC---CCCEEEBCSSTTTTTHHHHHHTTT---------TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CC
T ss_pred HHhcCCCcEEEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCC
Confidence 44456789999999999999999999763 366788999999999999999999999999999999999999
Q ss_pred CCCeeEEEeCCCcccccccCCCCcccccccc------cCHHhHHhhhcccCCCC-CCEEEEeccCcc
Q 048746 413 IDGIKYVIDPGFSKVKSYNPRTGMESLLVHP------ISKASAMQRAGRSGRTG-PGKCFRLYTLHN 472 (755)
Q Consensus 413 ip~v~~VId~g~~k~~~~~~~~~~~~l~~~p------~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~ 472 (755)
+|++++||+++. | .|..+|+||+|||||.| +|.|+.+++..+
T Consensus 423 ip~v~~VI~~~~------------------p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~ 471 (508)
T 3fho_A 423 VSQVNLVVNYDM------------------PLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKK 471 (508)
T ss_dssp CTTCCEEEC----------------------CC-----CTHHHHHTTSCCC-----CEEEEEECTTT
T ss_pred ccCCCEEEEECC------------------CCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChH
Confidence 999999999998 6 78999999999999998 599999998543
No 29
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-39 Score=390.07 Aligned_cols=326 Identities=17% Similarity=0.214 Sum_probs=241.4
Q ss_pred cCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEE
Q 048746 128 KTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEV 207 (755)
Q Consensus 128 ~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~v 207 (755)
+...++++|.++++++.++++++++||||||||++....+... +..+++++|++|+++|+.|+++++.+.++ .+|...
T Consensus 83 ~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~-l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-~vgllt 160 (1010)
T 2xgj_A 83 YPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS-LKNKQRVIYTSPIKALSNQKYRELLAEFG-DVGLMT 160 (1010)
T ss_dssp CSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHHHHHS-CEEEEC
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH-hccCCeEEEECChHHHHHHHHHHHHHHhC-CEEEEe
Confidence 3455799999999999999999999999999996544333332 23467999999999999999999999887 444443
Q ss_pred eeeeeccccCCCCceEEEeCcHHHHHHHhCC-CCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC-
Q 048746 208 GYSIRFEDCTSEKTILKYMTDGMLLREILSE-PNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL- 285 (755)
Q Consensus 208 g~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~-~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~- 285 (755)
| +......++|+|+||++|.+++... ..+.++++||||||| +..+.+....+-..+...+++.++|+||||+
T Consensus 161 G-----d~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH-~l~d~~rg~~~e~il~~l~~~~~il~LSATi~ 234 (1010)
T 2xgj_A 161 G-----DITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVRYVFLSATIP 234 (1010)
T ss_dssp S-----SCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGG-GGGCTTTHHHHHHHHHHSCTTCEEEEEECCCT
T ss_pred C-----CCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechh-hhcccchhHHHHHHHHhcCCCCeEEEEcCCCC
Confidence 3 3333456889999999999887654 478999999999999 5655544433444445567789999999999
Q ss_pred CHHHHHhhhC-----CCCEEEecCccccceEEEecCCc----------cc-----hH-----------------------
Q 048746 286 DAEKFSDYFG-----SAPIFKIPGRRYPVEIHYTKAPE----------AD-----YI----------------------- 322 (755)
Q Consensus 286 ~~~~l~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~----------~~-----~~----------------------- 322 (755)
+...+++|+. ...++....+..|+..++...+. .. +.
T Consensus 235 n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~ 314 (1010)
T 2xgj_A 235 NAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKK 314 (1010)
T ss_dssp THHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----------------
T ss_pred CHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccccccccc
Confidence 7778888875 23445556677777766543210 00 00
Q ss_pred -------------HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcc------------------cCC---C
Q 048746 323 -------------DAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRG------------------LGS---K 368 (755)
Q Consensus 323 -------------~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~------------------~~~---~ 368 (755)
...+..++........+++||||+++..++.++..|...... +.. .
T Consensus 315 ~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~ 394 (1010)
T 2xgj_A 315 GQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRE 394 (1010)
T ss_dssp --------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTT
T ss_pred ccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhc
Confidence 111223444444444669999999999999999888652100 000 0
Q ss_pred C---------CceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccc
Q 048746 369 I---------AELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESL 439 (755)
Q Consensus 369 ~---------~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l 439 (755)
. ....+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+. ...||...
T Consensus 395 l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~----- 465 (1010)
T 2xgj_A 395 LPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ----- 465 (1010)
T ss_dssp CHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSSC-----
T ss_pred chhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCcC-----
Confidence 0 01237889999999999999999999999999999999999999999999972 22344322
Q ss_pred cccccCHHhHHhhhcccCCCC---CCEEEEeccCc
Q 048746 440 LVHPISKASAMQRAGRSGRTG---PGKCFRLYTLH 471 (755)
Q Consensus 440 ~~~p~s~~~~~QR~GRaGR~g---~G~~~~l~~~~ 471 (755)
..|.|..+|+||+|||||.| .|.||.++++.
T Consensus 466 -~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 466 -FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp -EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred -CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 23899999999999999999 49999999865
No 30
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=7.5e-39 Score=358.99 Aligned_cols=292 Identities=20% Similarity=0.253 Sum_probs=208.3
Q ss_pred HHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccc-cCC
Q 048746 140 LQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED-CTS 218 (755)
Q Consensus 140 l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~-~~~ 218 (755)
..++.++++++++||||||||++....++......+++++|++|||+||.|+++++. | ..+++...... ...
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~---g----~~v~~~~~~~~~~~t 87 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR---G----LPVRYQTSAVQREHQ 87 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT---T----SCEEECC--------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc---C----ceEeEEecccccCCC
Confidence 445778999999999999999764433333223346789999999999999998875 2 22333322211 123
Q ss_pred CCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCCHHHHHhhh-CCC
Q 048746 219 EKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLDAEKFSDYF-GSA 297 (755)
Q Consensus 219 ~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~~~l~~~~-~~~ 297 (755)
+...+.++|.+.+.+.+...+.+.++++|||||||++.....+..+++..... .++.++|+||||++.+. ..+. ...
T Consensus 88 ~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~~~-~~~~~~~~ 165 (459)
T 2z83_A 88 GNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPGTT-DPFPDSNA 165 (459)
T ss_dssp CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCCCSS
T ss_pred CCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCCcch-hhhccCCC
Confidence 55678899999999999988899999999999999765555565566555443 46899999999996431 1111 133
Q ss_pred CEEEecCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEec
Q 048746 298 PIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPI 377 (755)
Q Consensus 298 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~l 377 (755)
|+..+.. .. +...+.. ....+ .. ..+++||||+++++++.+++.|... ++.+..+
T Consensus 166 pi~~~~~-~~---------~~~~~~~-~~~~l----~~-~~~~~LVF~~s~~~~~~l~~~L~~~---------g~~v~~l 220 (459)
T 2z83_A 166 PIHDLQD-EI---------PDRAWSS-GYEWI----TE-YAGKTVWFVASVKMGNEIAMCLQRA---------GKKVIQL 220 (459)
T ss_dssp CEEEEEC-CC---------CSSCCSS-CCHHH----HH-CCSCEEEECSCHHHHHHHHHHHHHT---------TCCEEEE
T ss_pred CeEEecc-cC---------CcchhHH-HHHHH----Hh-cCCCEEEEeCChHHHHHHHHHHHhc---------CCcEEec
Confidence 4433221 11 1111100 00011 11 2689999999999999999999885 3678899
Q ss_pred cCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccc---cccccCHHhHHhhhc
Q 048746 378 YANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESL---LVHPISKASAMQRAG 454 (755)
Q Consensus 378 h~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l---~~~p~s~~~~~QR~G 454 (755)
||. +|..+++.|++|..+|||||+++++|||+|+ ++|||+|..+.+.++ ..+...+ ...|.|.++|+||+|
T Consensus 221 h~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~-~~~~~~~~~~~d~p~s~~~~~QR~G 294 (459)
T 2z83_A 221 NRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTIL-EEGEGRVILGNPSPITSASAAQRRG 294 (459)
T ss_dssp STT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEE-CSSSCEEEECSCEECCHHHHHHHHT
T ss_pred CHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccc-cccccccccccCCCCCHHHHHHhcc
Confidence 985 7888999999999999999999999999999 999999987777665 2233333 337999999999999
Q ss_pred ccCCCC--CCEEEEeccCc
Q 048746 455 RSGRTG--PGKCFRLYTLH 471 (755)
Q Consensus 455 RaGR~g--~G~~~~l~~~~ 471 (755)
||||.| +|.||.++++.
T Consensus 295 RaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 295 RVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp TSSCCTTCCCEEEEECSCC
T ss_pred ccCCCCCCCCeEEEEEccc
Confidence 999998 79999999875
No 31
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.7e-38 Score=376.29 Aligned_cols=325 Identities=16% Similarity=0.166 Sum_probs=187.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcc----cCCCccccCccHHHHHHHHHHHHHHH
Q 048746 123 LQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGY----TKQGKVGCTQPRRVAAMSVAARVSQE 198 (755)
Q Consensus 123 l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~----~~~~~ilv~~P~r~la~q~a~~~~~~ 198 (755)
+...++..| +++|.++++.+..++++|+++|||||||++....+..... ..+++++|++||++|+.|+++.+.+.
T Consensus 6 l~~~g~~~l-r~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~ 84 (696)
T 2ykg_A 6 TNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKY 84 (696)
T ss_dssp -CTTC--CC-CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ccccCCCCc-cHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 344556666 9999999999999999999999999999555444433211 12368999999999999999988886
Q ss_pred h---CCccccEEeeeeeccc--cCCCCceEEEeCcHHHHHHHhCCC--CCCCCCceEeecccccCCccchHHHHHHHHHh
Q 048746 199 M---GVKLGHEVGYSIRFED--CTSEKTILKYMTDGMLLREILSEP--NLESYSVLMVDEAHERTLSTDILFGLLKDLIK 271 (755)
Q Consensus 199 ~---~~~~g~~vg~~~~~~~--~~~~~~~I~v~T~g~Ll~~l~~~~--~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~ 271 (755)
+ +..++...|....... .....++|+|+|||+|++.+..+. .+.++++|||||||+.. .......++..++.
T Consensus 85 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~-~~~~~~~i~~~~l~ 163 (696)
T 2ykg_A 85 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTS-KQHPYNMIMFNYLD 163 (696)
T ss_dssp TTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCS-TTCHHHHHHHHHHH
T ss_pred hccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCccc-CcccHHHHHHHHHH
Confidence 5 4444433331110000 001357999999999999997764 58899999999999433 33333333332222
Q ss_pred ------cCCCcEEEEeccCCC-------HH---HHHhhhC--CCCEEEecCcc---------ccceEEEe----------
Q 048746 272 ------FRSDLKLLISSATLD-------AE---KFSDYFG--SAPIFKIPGRR---------YPVEIHYT---------- 314 (755)
Q Consensus 272 ------~~~~~~~il~SAT~~-------~~---~l~~~~~--~~~~~~~~~~~---------~~v~~~~~---------- 314 (755)
..+..++|+||||+. .+ .+.+++. +..++...... .|......
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs 243 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 243 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHH
T ss_pred HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHH
Confidence 146789999999995 22 2222211 11111110000 00000000
Q ss_pred ------------------c-------------------------------------------------------------
Q 048746 315 ------------------K------------------------------------------------------------- 315 (755)
Q Consensus 315 ------------------~------------------------------------------------------------- 315 (755)
.
T Consensus 244 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 323 (696)
T 2ykg_A 244 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 323 (696)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHH
Confidence 0
Q ss_pred -----------------------CCccch-------------------------HHHHHHHHHHHHh----hCCCCCEEE
Q 048746 316 -----------------------APEADY-------------------------IDAAIVTVLQIHV----TQSPGDILV 343 (755)
Q Consensus 316 -----------------------~~~~~~-------------------------~~~~~~~~~~~~~----~~~~~~iLV 343 (755)
....+. ....+..+..+.. ..+++++||
T Consensus 324 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~II 403 (696)
T 2ykg_A 324 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 403 (696)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred hccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEE
Confidence 000000 0001112222222 235689999
Q ss_pred EcCCHHHHHHHHHHHHHhhcccCCCCCceEEEec--------cCCCCHHHHHHHhCCCCC-CCcEEEEeCCcccccCcCC
Q 048746 344 FLTGQEEIETADEILKHRTRGLGSKIAELIICPI--------YANLPTELQAKIFEPTPE-GARKVVLATNIAETSLTID 414 (755)
Q Consensus 344 F~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~l--------h~~l~~~~r~~i~~~f~~-g~~~vlvaT~i~~~Gidip 414 (755)
||+++..++.+++.|...+. ...+.+..+ ||+|++++|.++++.|++ |..+|||||+++++|||+|
T Consensus 404 F~~~~~~~~~l~~~L~~~~~-----~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip 478 (696)
T 2ykg_A 404 FVKTRALVDALKNWIEGNPK-----LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 478 (696)
T ss_dssp ECSCHHHHHHHHHHHHHCTT-----CCSCCEEC-----------------------------CCSCSEEEESSCCC---C
T ss_pred EeCcHHHHHHHHHHHHhCCC-----ccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCc
Confidence 99999999999999988531 112455556 679999999999999998 9999999999999999999
Q ss_pred CeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCccc
Q 048746 415 GIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNY 473 (755)
Q Consensus 415 ~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~ 473 (755)
+|++||++|+ |.+..+|+||+|| ||.++|.|+.|+++.+.
T Consensus 479 ~v~~VI~~d~------------------p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 479 QCNLVILYEY------------------VGNVIKMIQTRGR-GRARGSKCFLLTSNAGV 518 (696)
T ss_dssp CCSEEEEESC------------------C--CCCC----------CCCEEEEEESCHHH
T ss_pred cCCEEEEeCC------------------CCCHHHHHHhhcc-CcCCCceEEEEecCCCH
Confidence 9999999999 9999999999999 99999999999998765
No 32
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.2e-38 Score=351.80 Aligned_cols=293 Identities=16% Similarity=0.138 Sum_probs=209.0
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhcc-HHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEe
Q 048746 130 LPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQ-IPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVG 208 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~-ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg 208 (755)
..++++|.++++.+.++++++++||||||||.. ++.++.. ...+++++|++|||+|+.|+++++.+.. . .+..++
T Consensus 20 ~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~--~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~-~~~~v~ 95 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWL--ARKGKKSALVFPTVTLVKQTLERLQKLA-D-EKVKIF 95 (414)
T ss_dssp SCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHH--HTTTCCEEEEESSHHHHHHHHHHHHHHC-C-SSCCEE
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHH--hcCCCEEEEEECCHHHHHHHHHHHHHHc-c-CCceEE
Confidence 344999999999999999999999999999942 2222222 2356799999999999999999998843 2 333343
Q ss_pred eeeecccc----------CCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeeccc---------ccCCc-cchHHHHHHH
Q 048746 209 YSIRFEDC----------TSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAH---------ERTLS-TDILFGLLKD 268 (755)
Q Consensus 209 ~~~~~~~~----------~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaH---------er~~~-~d~~~~~l~~ 268 (755)
...+.... ....++|+|+||++|++.+.. ..+.++++||||||| +|+++ .++....+..
T Consensus 96 ~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~ 174 (414)
T 3oiy_A 96 GFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRK 174 (414)
T ss_dssp ECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHH
T ss_pred EEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHH
Confidence 22222111 123489999999999877653 456789999999999 34444 4444443333
Q ss_pred HHh-cC-----------CCcEEEEeccCC-CH----HHHHhhhCCCCEEEecCccccceEEEecCCccchHHHHHHHHHH
Q 048746 269 LIK-FR-----------SDLKLLISSATL-DA----EKFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQ 331 (755)
Q Consensus 269 ~~~-~~-----------~~~~~il~SAT~-~~----~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 331 (755)
+.. .+ ++.+++++|||+ +. ..+..++. ..+.........+...+...... ... ..
T Consensus 175 i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~---~~l----~~ 246 (414)
T 3oiy_A 175 AFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISSRSK---EKL----VE 246 (414)
T ss_dssp HHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-CCSSCCCCCCCSEEEEEESSCCH---HHH----HH
T ss_pred HHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-cCcCccccccccchheeeccCHH---HHH----HH
Confidence 332 22 778999999995 32 22233332 11111111223355555554322 222 22
Q ss_pred HHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEE-eccCCCCHHHHHHHhCCCCCCCcEEEEe----CCc
Q 048746 332 IHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIIC-PIYANLPTELQAKIFEPTPEGARKVVLA----TNI 406 (755)
Q Consensus 332 ~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~-~lh~~l~~~~r~~i~~~f~~g~~~vlva----T~i 406 (755)
+... .++++||||++++.++.+++.|...+ +.+. .+||. +|. ++.|++|..+|||| |++
T Consensus 247 ~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~---------~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~ 310 (414)
T 3oiy_A 247 LLEI-FRDGILIFAQTEEEGKELYEYLKRFK---------FNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGK 310 (414)
T ss_dssp HHHH-HCSSEEEEESSHHHHHHHHHHHHHTT---------CCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCC
T ss_pred HHHH-cCCCEEEEECCHHHHHHHHHHHHHcC---------CceehhhcCc----chH--HHHHhCCCCeEEEEecCcCch
Confidence 2222 24899999999999999999998853 6676 88985 344 89999999999999 999
Q ss_pred ccccCcCCC-eeEEEeCCCcccccccCCCCcccccccc--cCHHhHHhhhcccCCCC-----CCEEEEecc
Q 048746 407 AETSLTIDG-IKYVIDPGFSKVKSYNPRTGMESLLVHP--ISKASAMQRAGRSGRTG-----PGKCFRLYT 469 (755)
Q Consensus 407 ~~~Gidip~-v~~VId~g~~k~~~~~~~~~~~~l~~~p--~s~~~~~QR~GRaGR~g-----~G~~~~l~~ 469 (755)
+++|+|+|+ |++||++|+ | .+..+|+||+|||||.| +|.|+.++.
T Consensus 311 ~~~GiDip~~v~~VI~~~~------------------p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~ 363 (414)
T 3oiy_A 311 LTRGVDLPERIKYVIFWGT------------------PSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEE 363 (414)
T ss_dssp CCCCCCCTTTCCEEEEESC------------------CTTTCHHHHHHHHGGGCCEETTEECCEEEEEECC
T ss_pred hhccCccccccCEEEEECC------------------CCCCCHHHHHHHhCccccCCCCCCcceEEEEEEc
Confidence 999999999 999999999 9 89999999999999987 699999993
No 33
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=3.3e-39 Score=358.97 Aligned_cols=284 Identities=19% Similarity=0.231 Sum_probs=201.9
Q ss_pred cCCeEEEEccCCCchhccH-HHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeec-cccCCCCce
Q 048746 145 EYQVLVIVGETGSGKTTQI-PQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRF-EDCTSEKTI 222 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~i-p~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~-~~~~~~~~~ 222 (755)
++++++++||||||||..+ +.++... ...+.+++|++||++||.|+++.+. +.. +++..+. .....++..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~-~~~g~~~lvl~Pt~~La~Q~~~~~~---~~~----v~~~~~~~~~~~~~~~~ 72 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREA-VKKRLRTVILAPTRVVASEMYEALR---GEP----IRYMTPAVQSERTGNEI 72 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHH-HHTTCCEEEEESSHHHHHHHHHHTT---TSC----EEEC---------CCCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH-HhCCCCEEEECcHHHHHHHHHHHhC---CCe----EEEEecCccccCCCCce
Confidence 4789999999999999664 4333222 3345699999999999999987664 333 3333332 233445677
Q ss_pred EEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCCHHHHHhhhC-CCCEEE
Q 048746 223 LKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLDAEKFSDYFG-SAPIFK 301 (755)
Q Consensus 223 I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~~~l~~~~~-~~~~~~ 301 (755)
+.++|.+.+.+.+.....+.++++|||||+|..+...+.....++.+. .+++.++|+||||+... +..+.. ..++..
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~-~~~~~~~~~~i~~ 150 (431)
T 2v6i_A 73 VDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRV-SMGDAGAIFMTATPPGT-TEAFPPSNSPIID 150 (431)
T ss_dssp EEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HTTSCEEEEEESSCTTC-CCSSCCCSSCCEE
T ss_pred EEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHh-hCCCCcEEEEeCCCCcc-hhhhcCCCCceee
Confidence 889999999988888778999999999999954333333444444443 35689999999999542 111111 122222
Q ss_pred ecCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCC
Q 048746 302 IPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANL 381 (755)
Q Consensus 302 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l 381 (755)
+... .+.... . .++..... ..+++||||+++++++.+++.|.+. ++.+..+||+
T Consensus 151 ~~~~----------~~~~~~-~----~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~v~~lhg~- 204 (431)
T 2v6i_A 151 EETR----------IPDKAW-N----SGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKA---------GKKVLYLNRK- 204 (431)
T ss_dssp EECC----------CCSSCC-S----SCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHT---------TCCEEEESTT-
T ss_pred cccc----------CCHHHH-H----HHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHc---------CCeEEEeCCc-
Confidence 2111 111111 0 11111122 3679999999999999999999874 3678999997
Q ss_pred CHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC
Q 048746 382 PTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP 461 (755)
Q Consensus 382 ~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~ 461 (755)
+|.++++.|++|+.+|||||+++++|||+| +.+||++|..+.+.|| ..++......|.+.++|.||+||+||.|+
T Consensus 205 ---~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 279 (431)
T 2v6i_A 205 ---TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPE 279 (431)
T ss_dssp ---THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred ---cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHHHHhhhccCCCCC
Confidence 578899999999999999999999999999 9999999999988888 56666666779999999999999999984
Q ss_pred -CEEEEecc
Q 048746 462 -GKCFRLYT 469 (755)
Q Consensus 462 -G~~~~l~~ 469 (755)
+.|+.+|.
T Consensus 280 ~~~~~~~~~ 288 (431)
T 2v6i_A 280 KLGDIYAYS 288 (431)
T ss_dssp CCCCEEEEC
T ss_pred CCCeEEEEc
Confidence 44555554
No 34
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=6.5e-39 Score=369.67 Aligned_cols=313 Identities=19% Similarity=0.234 Sum_probs=222.4
Q ss_pred cchHHHHHHHH-HhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccH-HHHHHHhcccCCCccccCccHHHHHHHHH
Q 048746 115 KEKSALEMLQE-ERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQI-PQYLHEAGYTKQGKVGCTQPRRVAAMSVA 192 (755)
Q Consensus 115 ~~~~~~~~l~~-~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~i-p~~l~~~~~~~~~~ilv~~P~r~la~q~a 192 (755)
+++..++.+.. .+..+|++.. .++.+.++++++++||||||||+++ +.++... ...+.+++|++|||+||.|++
T Consensus 157 ~~~~~~~~l~~~~~~~lpiq~~---~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l-~~~~~~vLvl~PtreLa~Qi~ 232 (618)
T 2whx_A 157 KSGDYVSAITQAERIGEPDYEV---DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREA-LKRRLRTLILAPTRVVAAEME 232 (618)
T ss_dssp -----CEECBCCCCCCCCCCCC---CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHH-HHTTCCEEEEESSHHHHHHHH
T ss_pred chHHHHHHHhhccccCCCcccc---CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHH-HhCCCeEEEEcChHHHHHHHH
Confidence 34443333433 3555665433 5888999999999999999999663 3343332 234568999999999999999
Q ss_pred HHHHHHhCCccccEEeeeeec-cccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh
Q 048746 193 ARVSQEMGVKLGHEVGYSIRF-EDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK 271 (755)
Q Consensus 193 ~~~~~~~~~~~g~~vg~~~~~-~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~ 271 (755)
+.+. +..++|..+. +....++..+.++|.+.+.+.+..++.+.++++|||||||++....+.....+....
T Consensus 233 ~~l~-------~~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l- 304 (618)
T 2whx_A 233 EALR-------GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRV- 304 (618)
T ss_dssp HHTT-------TSCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-
T ss_pred HHhc-------CCceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHh-
Confidence 7764 2335555443 334556778899999999999888888999999999999954222222333333222
Q ss_pred cCCCcEEEEeccCCCHHHHHhhhC-CCCEEEecCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHH
Q 048746 272 FRSDLKLLISSATLDAEKFSDYFG-SAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEE 350 (755)
Q Consensus 272 ~~~~~~~il~SAT~~~~~l~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~ 350 (755)
.+++.|+|+||||++.. ...+.. +.+.+.+... +| ...+ . .++..... ..+++||||+++++
T Consensus 305 ~~~~~q~il~SAT~~~~-~~~~~~~~~~~~~v~~~-~~---------~~~~-~----~ll~~l~~-~~~~~LVF~~s~~~ 367 (618)
T 2whx_A 305 EMGEAAAIFMTATPPGS-TDPFPQSNSPIEDIERE-IP---------ERSW-N----TGFDWITD-YQGKTVWFVPSIKA 367 (618)
T ss_dssp HHTSCEEEEECSSCTTC-CCSSCCCSSCEEEEECC-CC---------SSCC-S----SSCHHHHH-CCSCEEEECSSHHH
T ss_pred cccCccEEEEECCCchh-hhhhhccCCceeeeccc-CC---------HHHH-H----HHHHHHHh-CCCCEEEEECChhH
Confidence 23689999999999543 223332 2223333221 11 1111 0 11111112 36899999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccc
Q 048746 351 IETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSY 430 (755)
Q Consensus 351 ~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~ 430 (755)
++.+++.|.+.+ +.+..+||+ +|.++++.|++|+.+|||||+++++|||+| |++|||+|+.+.+.+
T Consensus 368 a~~l~~~L~~~g---------~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~ 433 (618)
T 2whx_A 368 GNDIANCLRKSG---------KRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVI 433 (618)
T ss_dssp HHHHHHHHHHTT---------CCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEE
T ss_pred HHHHHHHHHHcC---------CcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceeccee
Confidence 999999999853 678889985 788899999999999999999999999998 999999999777655
Q ss_pred --cCCCCcccccccccCHHhHHhhhcccCCCC--CCEEEEeccC
Q 048746 431 --NPRTGMESLLVHPISKASAMQRAGRSGRTG--PGKCFRLYTL 470 (755)
Q Consensus 431 --~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g--~G~~~~l~~~ 470 (755)
+...++......|.|.++|+||+|||||.| +|.||.|+++
T Consensus 434 ~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~ 477 (618)
T 2whx_A 434 LTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 477 (618)
T ss_dssp ECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccC
Confidence 444455556667999999999999999996 7999999983
No 35
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=6.7e-38 Score=362.16 Aligned_cols=367 Identities=17% Similarity=0.177 Sum_probs=255.4
Q ss_pred HHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCc
Q 048746 142 AVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKT 221 (755)
Q Consensus 142 ~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~ 221 (755)
...++++++++||||||||+.+.+.+... +..+|++|||+||.|+++++.+ .|..++..+|.............
T Consensus 151 r~l~rk~vlv~apTGSGKT~~al~~l~~~-----~~gl~l~PtR~LA~Qi~~~l~~-~g~~v~lltG~~~~iv~TpGr~~ 224 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYHAIQKYFSA-----KSGVYCGPLKLLAHEIFEKSNA-AGVPCDLVTGEERVTVQPNGKQA 224 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHHHHHHHHHS-----SSEEEEESSHHHHHHHHHHHHH-TTCCEEEECSSCEECCSTTCCCC
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHhc-----CCeEEEeCHHHHHHHHHHHHHh-cCCcEEEEECCeeEEecCCCccc
Confidence 34578999999999999998666555543 2458889999999999999877 57777666664333222222346
Q ss_pred eEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcC-CCcEEEEeccCC-CHHHHHhhhCCCCE
Q 048746 222 ILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFR-SDLKLLISSATL-DAEKFSDYFGSAPI 299 (755)
Q Consensus 222 ~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~-~~~~~il~SAT~-~~~~l~~~~~~~~~ 299 (755)
+++++|++++ .....+++||||||| +..+.++...+...+...+ ++.+++++|||. ..+.+....+....
T Consensus 225 ~il~~T~e~~-------~l~~~v~lvVIDEaH-~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~~ 296 (677)
T 3rc3_A 225 SHVSCTVEMC-------SVTTPYEVAVIDEIQ-MIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVE 296 (677)
T ss_dssp SEEEEEGGGC-------CSSSCEEEEEECSGG-GGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCEE
T ss_pred ceeEecHhHh-------hhcccCCEEEEecce-ecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCceE
Confidence 7888888665 346778999999999 5677778777777777766 789999999997 33444444433222
Q ss_pred EEecCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccC
Q 048746 300 FKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYA 379 (755)
Q Consensus 300 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~ 379 (755)
+....+..+.. +....-. . .... .+..+|||+++++++.+++.|.+. ++.+..+||
T Consensus 297 v~~~~r~~~l~--~~~~~l~--------~----l~~~-~~g~iIf~~s~~~ie~la~~L~~~---------g~~v~~lHG 352 (677)
T 3rc3_A 297 VRDYKRLTPIS--VLDHALE--------S----LDNL-RPGDCIVCFSKNDIYSVSRQIEIR---------GLESAVIYG 352 (677)
T ss_dssp EEECCCSSCEE--ECSSCCC--------S----GGGC-CTTEEEECSSHHHHHHHHHHHHHT---------TCCCEEECT
T ss_pred EEEeeecchHH--HHHHHHH--------H----HHhc-CCCCEEEEcCHHHHHHHHHHHHhc---------CCCeeeeec
Confidence 22222222222 2111100 0 0111 234588899999999999999874 367899999
Q ss_pred CCCHHHHHHHhCCCCC--CCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccC
Q 048746 380 NLPTELQAKIFEPTPE--GARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSG 457 (755)
Q Consensus 380 ~l~~~~r~~i~~~f~~--g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaG 457 (755)
+|++++|..+++.|++ |.++|||||+++++|||+ +|++||++|+.|. .||+..+.. ..|.|.++|+||+||||
T Consensus 353 ~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~~---~~p~s~~~~~QR~GRAG 427 (677)
T 3rc3_A 353 SLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGERE---LEPITTSQALQIAGRAG 427 (677)
T ss_dssp TSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHHHHHHHTTBT
T ss_pred cCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCccc---cccCCHHHHHHHhcCCC
Confidence 9999999999999998 899999999999999999 8999999999887 788774432 45999999999999999
Q ss_pred CCC----CCEEEEeccCc--cccccCCCCCccchhccCchHHHHHHHHcCCCCCCcCCCCCCCcHHHHHHHHHHHHHccC
Q 048746 458 RTG----PGKCFRLYTLH--NYHKDMDDNTVPEIQRTNLANVVLILKSLGIDDLVNFDFIDPPPEEALLKALELLFALSA 531 (755)
Q Consensus 458 R~g----~G~~~~l~~~~--~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~i~~a~~~L~~~g~ 531 (755)
|.| +|.||++++++ .+ ..+.....|+|.+.++....++++.++.. ++...+.+.++.+..++.
T Consensus 428 R~g~~g~~G~v~~l~~~d~~~~-~~~~~~~~~~i~~~~l~p~~~~l~~~~~~----------l~~~~l~ell~~l~~~~~ 496 (677)
T 3rc3_A 428 RFSSRFKEGEVTTMNHEDLSLL-KEILKRPVDPIRAAGLHPTAEQIEMFAYH----------LPDATLSNLIDIFVDFSQ 496 (677)
T ss_dssp CTTSSCSSEEEEESSTTHHHHH-HHHHHSCCCCCCCEEECCCHHHHHHHHHH----------STTSCHHHHHHHHHHHCB
T ss_pred CCCCCCCCEEEEEEecchHHHH-HHHHhcCcchhhhccCCChHHHHHHHhcc----------CCcchHHHHHHHHHHhhc
Confidence 999 48999999875 33 34566788999998998888888877621 111235566666777776
Q ss_pred ccCCC---C---CCHHHHHhhcCCCChhhHHHHHhcc
Q 048746 532 LNKLG---E---LTKVGRRMAEFPLDPMLSKMIVASD 562 (755)
Q Consensus 532 l~~~~---~---lT~lG~~~~~~pl~p~~~~~l~~~~ 562 (755)
++... + ...++..+.++|++..---.+..+.
T Consensus 497 vd~~f~~~~l~~~~~la~~l~~~~L~~~~~~~f~~aP 533 (677)
T 3rc3_A 497 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAP 533 (677)
T ss_dssp CCTTEEECCCHHHHHHHHHTTTSCCCHHHHHHHHHSC
T ss_pred ccchhhccchHHHHHHHHHHhhCCCCHHHHhheEeCC
Confidence 66432 1 2345566666666665554444443
No 36
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.6e-37 Score=353.50 Aligned_cols=323 Identities=13% Similarity=0.108 Sum_probs=176.2
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcc-c---CCCccccCccHHHHHHHHHHHHHHHh---CCc
Q 048746 130 LPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGY-T---KQGKVGCTQPRRVAAMSVAARVSQEM---GVK 202 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~-~---~~~~ilv~~P~r~la~q~a~~~~~~~---~~~ 202 (755)
+.++++|.++++.+.+++++++++|||||||.+....+..... . .+++++|++|+++|+.|+++.+.+.+ +..
T Consensus 6 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 85 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 85 (556)
T ss_dssp --CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 3349999999999999999999999999999443322222211 1 15689999999999999999998864 455
Q ss_pred cccEEeeeeeccc--cCCCCceEEEeCcHHHHHHHhCCC--CCCCCCceEeecccccCCccchHHHHHHHHHhc-----C
Q 048746 203 LGHEVGYSIRFED--CTSEKTILKYMTDGMLLREILSEP--NLESYSVLMVDEAHERTLSTDILFGLLKDLIKF-----R 273 (755)
Q Consensus 203 ~g~~vg~~~~~~~--~~~~~~~I~v~T~g~Ll~~l~~~~--~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~-----~ 273 (755)
++...|....... ......+|+|+||++|.+.+.... .+.++++||||||| +.........++..+... .
T Consensus 86 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah-~~~~~~~~~~~~~~~~~~~~~~~~ 164 (556)
T 4a2p_A 86 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECH-NTTGNHPYNVLMTRYLEQKFNSAS 164 (556)
T ss_dssp EEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGG-GCSTTSHHHHHHHHHHHHHHCC--
T ss_pred EEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCc-ccCCcchHHHHHHHHHHhhhcccC
Confidence 5444442211110 011347899999999999987654 58899999999999 555555555544444332 4
Q ss_pred CCcEEEEeccCCCH---HH----------HHhhhCCCCEEEecCc---------cccceEEEecC--Cc-----------
Q 048746 274 SDLKLLISSATLDA---EK----------FSDYFGSAPIFKIPGR---------RYPVEIHYTKA--PE----------- 318 (755)
Q Consensus 274 ~~~~~il~SAT~~~---~~----------l~~~~~~~~~~~~~~~---------~~~v~~~~~~~--~~----------- 318 (755)
+..++++||||+.. .. +...++. ..+..... ..|........ ..
T Consensus 165 ~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (556)
T 4a2p_A 165 QLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDI-QAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 243 (556)
T ss_dssp -CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTC-SEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCC-eEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHH
Confidence 67899999999922 11 1122221 11211110 00111110000 00
Q ss_pred --------------------------------------------------------------------------------
Q 048746 319 -------------------------------------------------------------------------------- 318 (755)
Q Consensus 319 -------------------------------------------------------------------------------- 318 (755)
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (556)
T 4a2p_A 244 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 323 (556)
T ss_dssp HHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence
Q ss_pred -----------------------------------------------cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHH
Q 048746 319 -----------------------------------------------ADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEI 351 (755)
Q Consensus 319 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~ 351 (755)
..........+.......+++++||||+++..+
T Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~ 403 (556)
T 4a2p_A 324 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 403 (556)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHH
Confidence 000000111111112225578999999999999
Q ss_pred HHHHHHHHHhhcccCC---CCCceEEEeccCCCCHHHHHHHhCCCCC-CCcEEEEeCCcccccCcCCCeeEEEeCCCccc
Q 048746 352 ETADEILKHRTRGLGS---KIAELIICPIYANLPTELQAKIFEPTPE-GARKVVLATNIAETSLTIDGIKYVIDPGFSKV 427 (755)
Q Consensus 352 ~~l~~~L~~~~~~~~~---~~~~~~v~~lh~~l~~~~r~~i~~~f~~-g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~ 427 (755)
+.+++.|.+.....+. ...+.....+||+|++++|..+++.|++ |..+|||||+++++|||+|+|++||++|+
T Consensus 404 ~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~--- 480 (556)
T 4a2p_A 404 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY--- 480 (556)
T ss_dssp HHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETC---
T ss_pred HHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC---
Confidence 9999999764110000 0012344567899999999999999999 99999999999999999999999999999
Q ss_pred ccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCccc
Q 048746 428 KSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNY 473 (755)
Q Consensus 428 ~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~ 473 (755)
|.|..+|+||+|| ||.++|.||.|+++.+.
T Consensus 481 ---------------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 481 ---------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 510 (556)
T ss_dssp ---------------CSCHHHHHHC---------CCEEEEESCHHH
T ss_pred ---------------CCCHHHHHHhcCC-CCCCCceEEEEEeCcch
Confidence 9999999999999 99999999999998765
No 37
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.8e-37 Score=344.40 Aligned_cols=316 Identities=20% Similarity=0.207 Sum_probs=226.3
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCC---ccccE
Q 048746 130 LPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGV---KLGHE 206 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~---~~g~~ 206 (755)
++++++|.++++.+..+ ++++.+|||+|||.++..++.......+++++|++|+++|+.|+++++.+.++. .++..
T Consensus 8 ~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~ 86 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVAL 86 (494)
T ss_dssp HCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEE
T ss_pred CCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEe
Confidence 35699999999999888 999999999999976666655442234568999999999999999999998765 33333
Q ss_pred Eeeeeeccc-cCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccC
Q 048746 207 VGYSIRFED-CTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSAT 284 (755)
Q Consensus 207 vg~~~~~~~-~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT 284 (755)
.|.....+. ......+|+|+||+.|.+.+.... .+.++++||||||| +.........+...+....+..++++||||
T Consensus 87 ~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH-~~~~~~~~~~~~~~~~~~~~~~~~l~lTaT 165 (494)
T 1wp9_A 87 TGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAH-RAVGNYAYVFIAREYKRQAKNPLVIGLTAS 165 (494)
T ss_dssp CSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGG-GCSTTCHHHHHHHHHHHHCSSCCEEEEESC
T ss_pred eCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCc-ccCCCCcHHHHHHHHHhcCCCCeEEEEecC
Confidence 331111000 011256899999999999886554 57889999999999 555544555556666666778899999999
Q ss_pred CC--HHHHHhh---hCCCCEEEecCc-------cccceEEEe--cCCcc-------------------------------
Q 048746 285 LD--AEKFSDY---FGSAPIFKIPGR-------RYPVEIHYT--KAPEA------------------------------- 319 (755)
Q Consensus 285 ~~--~~~l~~~---~~~~~~~~~~~~-------~~~v~~~~~--~~~~~------------------------------- 319 (755)
+. .+.+.++ ++..+....... ..+....+. ..+..
T Consensus 166 p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (494)
T 1wp9_A 166 PGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPD 245 (494)
T ss_dssp SCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTT
T ss_pred CCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 94 4444433 322211111000 001111110 00000
Q ss_pred -----------------------------------------------------chH------------------------
Q 048746 320 -----------------------------------------------------DYI------------------------ 322 (755)
Q Consensus 320 -----------------------------------------------------~~~------------------------ 322 (755)
.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (494)
T 1wp9_A 246 IPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRM 325 (494)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHH
T ss_pred cchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHH
Confidence 000
Q ss_pred ----------------HHHHHHHHHHHhh----CCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccC---
Q 048746 323 ----------------DAAIVTVLQIHVT----QSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYA--- 379 (755)
Q Consensus 323 ----------------~~~~~~~~~~~~~----~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~--- 379 (755)
...+..+..+... .+++++||||+++..++.+++.|... ++.+..+||
T Consensus 326 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~ 396 (494)
T 1wp9_A 326 KKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD---------GIKAKRFVGQAS 396 (494)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT---------TCCEEEECCSSC
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc---------CCCcEEEecccc
Confidence 0011112222222 46789999999999999999999885 367888999
Q ss_pred -----CCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhc
Q 048746 380 -----NLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAG 454 (755)
Q Consensus 380 -----~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~G 454 (755)
+++..+|..+++.|++|..+|||||+++++|||+|++++||+++. |.+...|.||+|
T Consensus 397 ~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~------------------~~~~~~~~Qr~G 458 (494)
T 1wp9_A 397 KENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP------------------VPSAIRSIQRRG 458 (494)
T ss_dssp C-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSC------------------CHHHHHHHHHHT
T ss_pred ccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCC------------------CCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccCCCCCCEEEEeccCcccc
Q 048746 455 RSGRTGPGKCFRLYTLHNYH 474 (755)
Q Consensus 455 RaGR~g~G~~~~l~~~~~~~ 474 (755)
|+||.|+|.+|+|+++.+.+
T Consensus 459 R~~R~g~g~~~~l~~~~t~e 478 (494)
T 1wp9_A 459 RTGRHMPGRVIILMAKGTRD 478 (494)
T ss_dssp TSCSCCCSEEEEEEETTSHH
T ss_pred hccCCCCceEEEEEecCCHH
Confidence 99999999999999987653
No 38
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.9e-36 Score=348.79 Aligned_cols=322 Identities=15% Similarity=0.150 Sum_probs=199.0
Q ss_pred CChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcc----cCCCccccCccHHHHHHHHHHHHHHHh---CCcc
Q 048746 131 PIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGY----TKQGKVGCTQPRRVAAMSVAARVSQEM---GVKL 203 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~----~~~~~ilv~~P~r~la~q~a~~~~~~~---~~~~ 203 (755)
.++++|.++++.+.+++++++++|||||||.+....+..... ..+++++|++|+++|+.|+++.+.+.+ +..+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 459999999999999999999999999999443333322211 115689999999999999999988865 4554
Q ss_pred ccEEeeeeeccc--cCCCCceEEEeCcHHHHHHHhCCC--CCCCCCceEeecccccCCccchHHHHHHHHHhc------C
Q 048746 204 GHEVGYSIRFED--CTSEKTILKYMTDGMLLREILSEP--NLESYSVLMVDEAHERTLSTDILFGLLKDLIKF------R 273 (755)
Q Consensus 204 g~~vg~~~~~~~--~~~~~~~I~v~T~g~Ll~~l~~~~--~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~------~ 273 (755)
+...|....... ....+.+|+|+||++|.+.+.... .+.++++||||||| +.........++...... .
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah-~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECH-NTSKNHPYNQIMFRYLDHKLGESRD 162 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGG-GCSTTCHHHHHHHHHHHHHTSSCCS
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECcc-ccCCcchHHHHHHHHHHhhhccccC
Confidence 444442211100 011247899999999999987654 58889999999999 555544444444444332 2
Q ss_pred CCcEEEEeccCCCH----------HHH---HhhhCCCCEEEecCc---------cccceEEE-ecCCc------------
Q 048746 274 SDLKLLISSATLDA----------EKF---SDYFGSAPIFKIPGR---------RYPVEIHY-TKAPE------------ 318 (755)
Q Consensus 274 ~~~~~il~SAT~~~----------~~l---~~~~~~~~~~~~~~~---------~~~v~~~~-~~~~~------------ 318 (755)
+..++++||||+.. +.+ ...++ .+.+..... ..|..... .....
T Consensus 163 ~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T 3tbk_A 163 PLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALD-ASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLM 241 (555)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTT-CSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCeEEEEecCcccCccccHHHHHHHHHHHHHhcC-CeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHH
Confidence 66899999999932 222 22222 222222111 00111110 00000
Q ss_pred --------------------------------------------------------------------------------
Q 048746 319 -------------------------------------------------------------------------------- 318 (755)
Q Consensus 319 -------------------------------------------------------------------------------- 318 (755)
T Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 321 (555)
T 3tbk_A 242 KETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQ 321 (555)
T ss_dssp HHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence
Q ss_pred ------------------------------------------------cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHH
Q 048746 319 ------------------------------------------------ADYIDAAIVTVLQIHVTQSPGDILVFLTGQEE 350 (755)
Q Consensus 319 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~ 350 (755)
..........+.......+.+++||||+++..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~ 401 (555)
T 3tbk_A 322 MTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRAL 401 (555)
T ss_dssp HHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHH
Confidence 00011111111122223456899999999999
Q ss_pred HHHHHHHHHHhhcccCC---CCCceEEEeccCCCCHHHHHHHhCCCCC-CCcEEEEeCCcccccCcCCCeeEEEeCCCcc
Q 048746 351 IETADEILKHRTRGLGS---KIAELIICPIYANLPTELQAKIFEPTPE-GARKVVLATNIAETSLTIDGIKYVIDPGFSK 426 (755)
Q Consensus 351 ~~~l~~~L~~~~~~~~~---~~~~~~v~~lh~~l~~~~r~~i~~~f~~-g~~~vlvaT~i~~~Gidip~v~~VId~g~~k 426 (755)
++.+++.|...+..... ...+.....+||+|++++|.++++.|++ |..+|||||+++++|||+|++++||++|+
T Consensus 402 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~-- 479 (555)
T 3tbk_A 402 VDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEY-- 479 (555)
T ss_dssp HHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESC--
T ss_pred HHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCC--
Confidence 99999999875321000 0012334556789999999999999999 99999999999999999999999999999
Q ss_pred cccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCccc
Q 048746 427 VKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNY 473 (755)
Q Consensus 427 ~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~ 473 (755)
|.|..+|+||+|| ||..+|.||.|+++.+.
T Consensus 480 ----------------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 480 ----------------VGNVIKMIQTRGR-GRARDSKCFLLTSSADV 509 (555)
T ss_dssp ----------------CSSCCCEECSSCC-CTTTSCEEEEEESCHHH
T ss_pred ----------------CCCHHHHHHhcCc-CcCCCceEEEEEcCCCH
Confidence 9999999999999 99988999999998755
No 39
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.3e-35 Score=355.62 Aligned_cols=324 Identities=14% Similarity=0.123 Sum_probs=184.3
Q ss_pred cCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhccc----CCCccccCccHHHHHHHHHHHHHHHh---C
Q 048746 128 KTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYT----KQGKVGCTQPRRVAAMSVAARVSQEM---G 200 (755)
Q Consensus 128 ~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~----~~~~ilv~~P~r~la~q~a~~~~~~~---~ 200 (755)
...| +++|.++++.+.+++++|+++|||||||.+....+...... .+++++|++|+++|+.|+++.+.+.+ +
T Consensus 246 ~~~l-~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~ 324 (797)
T 4a2q_A 246 TKKA-RSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 324 (797)
T ss_dssp --CC-CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCC-CHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCC
Confidence 4445 99999999999999999999999999994333333222111 15689999999999999999988865 5
Q ss_pred CccccEEeeeeeccc--cCCCCceEEEeCcHHHHHHHhCCC--CCCCCCceEeecccccCCccchHHHHHHHHHhc----
Q 048746 201 VKLGHEVGYSIRFED--CTSEKTILKYMTDGMLLREILSEP--NLESYSVLMVDEAHERTLSTDILFGLLKDLIKF---- 272 (755)
Q Consensus 201 ~~~g~~vg~~~~~~~--~~~~~~~I~v~T~g~Ll~~l~~~~--~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~---- 272 (755)
..++...|....... ....+.+|+|+||++|.+.+.... .+.++++||||||| +.........++..+...
T Consensus 325 ~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH-~~~~~~~~~~i~~~~~~~~~~~ 403 (797)
T 4a2q_A 325 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECH-NTTGNHPYNVLMTRYLEQKFNS 403 (797)
T ss_dssp CCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGG-GCSTTSHHHHHHHHHHHHHHTT
T ss_pred ceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECcc-ccCCCccHHHHHHHHHHHhhcc
Confidence 555555443211110 111357899999999999987654 57889999999999 555554455555444433
Q ss_pred -CCCcEEEEeccCCCH----------HHH---HhhhCCCCEEEecCc---------cccceEEE-ecC------------
Q 048746 273 -RSDLKLLISSATLDA----------EKF---SDYFGSAPIFKIPGR---------RYPVEIHY-TKA------------ 316 (755)
Q Consensus 273 -~~~~~~il~SAT~~~----------~~l---~~~~~~~~~~~~~~~---------~~~v~~~~-~~~------------ 316 (755)
.+..++++||||+.. +.+ ...++.. .+..... ..|..... ...
T Consensus 404 ~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~-~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (797)
T 4a2q_A 404 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ-AISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 482 (797)
T ss_dssp CCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS-EEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHH
T ss_pred CCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCc-EEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHH
Confidence 567899999999931 112 2222211 1111110 00100000 000
Q ss_pred -----------------------------------------------Cc-------------------------------
Q 048746 317 -----------------------------------------------PE------------------------------- 318 (755)
Q Consensus 317 -----------------------------------------------~~------------------------------- 318 (755)
+.
T Consensus 483 l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 562 (797)
T 4a2q_A 483 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 562 (797)
T ss_dssp HHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 00
Q ss_pred -------------------------------------------------cchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q 048746 319 -------------------------------------------------ADYIDAAIVTVLQIHVTQSPGDILVFLTGQE 349 (755)
Q Consensus 319 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~ 349 (755)
..+.......+.......+++++||||+++.
T Consensus 563 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~ 642 (797)
T 4a2q_A 563 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 642 (797)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHH
T ss_pred cHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHH
Confidence 0000000011111112255689999999999
Q ss_pred HHHHHHHHHHHhhcccCC---CCCceEEEeccCCCCHHHHHHHhCCCCC-CCcEEEEeCCcccccCcCCCeeEEEeCCCc
Q 048746 350 EIETADEILKHRTRGLGS---KIAELIICPIYANLPTELQAKIFEPTPE-GARKVVLATNIAETSLTIDGIKYVIDPGFS 425 (755)
Q Consensus 350 ~~~~l~~~L~~~~~~~~~---~~~~~~v~~lh~~l~~~~r~~i~~~f~~-g~~~vlvaT~i~~~Gidip~v~~VId~g~~ 425 (755)
.++.+++.|.......+. ...+.....+||+|++.+|..+++.|++ |..+|||||+++++|||+|+|++||+||.
T Consensus 643 ~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~- 721 (797)
T 4a2q_A 643 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY- 721 (797)
T ss_dssp HHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC-
T ss_pred HHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC-
Confidence 999999999863110000 0012345567999999999999999999 99999999999999999999999999999
Q ss_pred ccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCccc
Q 048746 426 KVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNY 473 (755)
Q Consensus 426 k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~ 473 (755)
|.|...|+||+|| ||..+|.||+|+++.+.
T Consensus 722 -----------------p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 722 -----------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (797)
T ss_dssp -----------------CSCHHHHHTC--------CCCEEEEECCHHH
T ss_pred -----------------CCCHHHHHHhcCC-CCCCCceEEEEEeCCcH
Confidence 9999999999999 99999999999998654
No 40
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=4.5e-36 Score=334.43 Aligned_cols=289 Identities=16% Similarity=0.185 Sum_probs=196.5
Q ss_pred HHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeec-cccCCCC
Q 048746 142 AVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRF-EDCTSEK 220 (755)
Q Consensus 142 ~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~-~~~~~~~ 220 (755)
++.++++++++||||||||..+...++......+.+++|++|||+||.|+++.+.. . .+++.... ....+++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~---~----~v~~~~~~~~~v~Tp~ 76 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHG---L----DVKFHTQAFSAHGSGR 76 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT---S----CEEEESSCCCCCCCSS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhc---C----CeEEecccceeccCCc
Confidence 35689999999999999996643333332223456899999999999999987752 2 22333222 1233445
Q ss_pred ceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCCHHHHHhhhC-CCCE
Q 048746 221 TILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLDAEKFSDYFG-SAPI 299 (755)
Q Consensus 221 ~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~~~l~~~~~-~~~~ 299 (755)
.-+.+++.+.+...+.....+.++++|||||||......+...+++..+.. +++.++++||||++.. ...+.. ..++
T Consensus 77 ~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~-~~~~~~~~~~~ 154 (440)
T 1yks_A 77 EVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPGT-SDEFPHSNGEI 154 (440)
T ss_dssp CCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTC-CCSSCCCSSCE
T ss_pred cceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCch-hhhhhhcCCCe
Confidence 556677778887777777789999999999999432222233444444433 4679999999999543 111111 1122
Q ss_pred EEecCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccC
Q 048746 300 FKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYA 379 (755)
Q Consensus 300 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~ 379 (755)
..+ ....+.... ...+..+. . .++++||||+++++++.+++.|.+. ++.+..+||
T Consensus 155 ~~~----------~~~~~~~~~-~~~~~~l~----~-~~~~~lVF~~s~~~a~~l~~~L~~~---------~~~v~~lhg 209 (440)
T 1yks_A 155 EDV----------QTDIPSEPW-NTGHDWIL----A-DKRPTAWFLPSIRAANVMAASLRKA---------GKSVVVLNR 209 (440)
T ss_dssp EEE----------ECCCCSSCC-SSSCHHHH----H-CCSCEEEECSCHHHHHHHHHHHHHT---------TCCEEECCS
T ss_pred eEe----------eeccChHHH-HHHHHHHH----h-cCCCEEEEeCCHHHHHHHHHHHHHc---------CCCEEEecc
Confidence 111 111111111 00111111 1 2689999999999999999999884 367899999
Q ss_pred CCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccc-cCCCCcccccccccCHHhHHhhhcccCC
Q 048746 380 NLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSY-NPRTGMESLLVHPISKASAMQRAGRSGR 458 (755)
Q Consensus 380 ~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~-~~~~~~~~l~~~p~s~~~~~QR~GRaGR 458 (755)
++|.++++.|++|+.+|||||+++++|||+| +++|||+|..+.+.| +...++......|.+.++|+||+|||||
T Consensus 210 ----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR 284 (440)
T 1yks_A 210 ----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGR 284 (440)
T ss_dssp ----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred ----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCC
Confidence 4688999999999999999999999999999 999999999887776 4444555555669999999999999999
Q ss_pred CC--CCEEEEecc
Q 048746 459 TG--PGKCFRLYT 469 (755)
Q Consensus 459 ~g--~G~~~~l~~ 469 (755)
.| +|.||.|++
T Consensus 285 ~g~~~g~~~~l~~ 297 (440)
T 1yks_A 285 NPNRDGDSYYYSE 297 (440)
T ss_dssp CTTCCCEEEEECS
T ss_pred CCCCCceEEEEec
Confidence 84 799999985
No 41
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=359.04 Aligned_cols=318 Identities=16% Similarity=0.184 Sum_probs=205.0
Q ss_pred CCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHh-----cccCCCccccCccHHHHHHHH-HHHHHHHhC--
Q 048746 129 TLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEA-----GYTKQGKVGCTQPRRVAAMSV-AARVSQEMG-- 200 (755)
Q Consensus 129 ~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~-----~~~~~~~ilv~~P~r~la~q~-a~~~~~~~~-- 200 (755)
.++++++|.++++.+.+++++|+++|||||||.+....+... ....+++++|++|+++|+.|+ ++++.+.++
T Consensus 5 ~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~ 84 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW 84 (699)
T ss_dssp --CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTT
T ss_pred CCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcC
Confidence 456799999999999999999999999999994433333221 111236899999999999999 999998776
Q ss_pred CccccEEeeeeeccc--cCCCCceEEEeCcHHHHHHHhCC-------CCCCCCCceEeecccccCCccchHHHHHHHHHh
Q 048746 201 VKLGHEVGYSIRFED--CTSEKTILKYMTDGMLLREILSE-------PNLESYSVLMVDEAHERTLSTDILFGLLKDLIK 271 (755)
Q Consensus 201 ~~~g~~vg~~~~~~~--~~~~~~~I~v~T~g~Ll~~l~~~-------~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~ 271 (755)
..++...|.....+. ......+|+|+||++|.+.+... ..+.++++||||||| +......+..++..+..
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH-~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH-HTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGG-GCBTTBSSCSHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECcc-ccCccchHHHHHHHHHH
Confidence 455544553221110 11146899999999999887432 267889999999999 55443332222222222
Q ss_pred -----cC---------CCcEEEEeccCCCH----------H---HHHhhhCCCCEEEecCc--------cccceEEE-ec
Q 048746 272 -----FR---------SDLKLLISSATLDA----------E---KFSDYFGSAPIFKIPGR--------RYPVEIHY-TK 315 (755)
Q Consensus 272 -----~~---------~~~~~il~SAT~~~----------~---~l~~~~~~~~~~~~~~~--------~~~v~~~~-~~ 315 (755)
.. +..++|+||||+.. + .+...+....+...... ..|..... ..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcc
Confidence 22 67899999999953 1 12223332111111100 01111110 00
Q ss_pred CCc------------------------cc---------------------------------------------------
Q 048746 316 APE------------------------AD--------------------------------------------------- 320 (755)
Q Consensus 316 ~~~------------------------~~--------------------------------------------------- 320 (755)
... .+
T Consensus 244 ~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (699)
T 4gl2_A 244 ATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAY 323 (699)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00
Q ss_pred ----------------------------------------------------------hHHHHHHHHHHHHhhCC-CCCE
Q 048746 321 ----------------------------------------------------------YIDAAIVTVLQIHVTQS-PGDI 341 (755)
Q Consensus 321 ----------------------------------------------------------~~~~~~~~~~~~~~~~~-~~~i 341 (755)
........+.......+ ++++
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~ 403 (699)
T 4gl2_A 324 THLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARG 403 (699)
T ss_dssp HHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCE
T ss_pred HHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcE
Confidence 00000011111122223 6899
Q ss_pred EEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCC--------CCHHHHHHHhCCCCCCCcEEEEeCCcccccCcC
Q 048746 342 LVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYAN--------LPTELQAKIFEPTPEGARKVVLATNIAETSLTI 413 (755)
Q Consensus 342 LVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~--------l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidi 413 (755)
||||++++.++.+++.|.... .+ ...++.+..+||+ |++.+|.++++.|++|..+|||||+++++|||+
T Consensus 404 IVF~~s~~~~~~l~~~L~~~~-~l--~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDi 480 (699)
T 4gl2_A 404 IIFTKTRQSAYALSQWITENE-KF--AEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDI 480 (699)
T ss_dssp EEECSCHHHHHHHHHHHHSSC-SC--C-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCC
T ss_pred EEEECcHHHHHHHHHHHHhCc-cc--cccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcc
Confidence 999999999999999998741 00 0124778899999 999999999999999999999999999999999
Q ss_pred CCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEecc
Q 048746 414 DGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYT 469 (755)
Q Consensus 414 p~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~ 469 (755)
|+|++||++|+ |.|..+|+||+|||||.| +.++.++.
T Consensus 481 p~v~~VI~~d~------------------p~s~~~~~Qr~GRArr~g-~~~~l~~~ 517 (699)
T 4gl2_A 481 KECNIVIRYGL------------------VTNEIAMVQARGRARADE-STYVLVAH 517 (699)
T ss_dssp CSCCCCEEESC------------------CCCHHHHHHHHTTSCSSS-CEEEEEEE
T ss_pred ccCCEEEEeCC------------------CCCHHHHHHHcCCCCCCC-ceEEEEEe
Confidence 99999999999 999999999999988765 44444433
No 42
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=7e-36 Score=346.47 Aligned_cols=300 Identities=18% Similarity=0.232 Sum_probs=213.3
Q ss_pred CCChHHHH-----HHHHHHH------cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHH
Q 048746 130 LPIYPYRD-----ELLQAVN------EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQE 198 (755)
Q Consensus 130 lPl~~~Q~-----~~l~~i~------~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~ 198 (755)
.| +++|+ ++++.+. ++++++++||||||||+.+...++......+.+++|++|||+||.|+++.+..
T Consensus 215 ~p-t~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~- 292 (673)
T 2wv9_A 215 YV-SAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRG- 292 (673)
T ss_dssp EE-EEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-
T ss_pred cc-CceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhc-
Confidence 55 78888 8888766 89999999999999996643333222223456899999999999999987753
Q ss_pred hCCccccEEeeeeec-cccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcE
Q 048746 199 MGVKLGHEVGYSIRF-EDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLK 277 (755)
Q Consensus 199 ~~~~~g~~vg~~~~~-~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~ 277 (755)
++ +++.... .....+...+.+++.+.+.+.+..+..+.++++|||||||+.....+.....+..+.. +++.+
T Consensus 293 ~~------i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~-~~~~~ 365 (673)
T 2wv9_A 293 LP------VRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVE-AGEAA 365 (673)
T ss_dssp SC------CEECCC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH-TTSCE
T ss_pred CC------eeeecccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhcc-ccCCc
Confidence 22 2232221 1234455677888899998888888889999999999999543333344455554432 36789
Q ss_pred EEEeccCCCHHHHHhhhC-CCCEEEecCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHH
Q 048746 278 LLISSATLDAEKFSDYFG-SAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADE 356 (755)
Q Consensus 278 ~il~SAT~~~~~l~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~ 356 (755)
+|+||||++.. +..+.. ..++..+.. ..+.... ... +.... ...+++||||+++++++.+++
T Consensus 366 vl~~SAT~~~~-i~~~~~~~~~i~~v~~----------~~~~~~~-~~~----l~~l~-~~~~~~lVF~~s~~~~e~la~ 428 (673)
T 2wv9_A 366 AIFMTATPPGT-SDPFPDTNSPVHDVSS----------EIPDRAW-SSG----FEWIT-DYAGKTVWFVASVKMSNEIAQ 428 (673)
T ss_dssp EEEECSSCTTC-CCSSCCCSSCEEEEEC----------CCCSSCC-SSC----CHHHH-SCCSCEEEECSSHHHHHHHHH
T ss_pred EEEEcCCCChh-hhhhcccCCceEEEee----------ecCHHHH-HHH----HHHHH-hCCCCEEEEECCHHHHHHHHH
Confidence 99999999533 111111 223322221 1111111 001 11111 247899999999999999999
Q ss_pred HHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccc--cccCCC
Q 048746 357 ILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVK--SYNPRT 434 (755)
Q Consensus 357 ~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~--~~~~~~ 434 (755)
.|.+. ++.+..+||+ +|.++++.|++|+.+|||||+++++|||+| +++|||+|....+ .||+..
T Consensus 429 ~L~~~---------g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~ 494 (673)
T 2wv9_A 429 CLQRA---------GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEG 494 (673)
T ss_dssp HHHTT---------TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTC
T ss_pred HHHhC---------CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccc
Confidence 99874 3678999994 789999999999999999999999999999 9999999965543 366665
Q ss_pred CcccccccccCHHhHHhhhcccCCC-C-CCEEEEecc
Q 048746 435 GMESLLVHPISKASAMQRAGRSGRT-G-PGKCFRLYT 469 (755)
Q Consensus 435 ~~~~l~~~p~s~~~~~QR~GRaGR~-g-~G~~~~l~~ 469 (755)
++..+...|.|.++|+||+|||||. + +|.||.|+.
T Consensus 495 r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 495 RVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp EEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred cceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 5555556699999999999999999 4 699999985
No 43
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.6e-34 Score=349.78 Aligned_cols=323 Identities=15% Similarity=0.134 Sum_probs=185.4
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhccc-C---CCccccCccHHHHHHHHHHHHHHHh---CCc
Q 048746 130 LPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYT-K---QGKVGCTQPRRVAAMSVAARVSQEM---GVK 202 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~-~---~~~ilv~~P~r~la~q~a~~~~~~~---~~~ 202 (755)
..++++|.++++.+.+++++++++|||||||.+....+...... . +++++|++|+++|+.|+++.+.+.+ +..
T Consensus 247 ~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (936)
T 4a2w_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (936)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 34499999999999999999999999999995544444433222 1 5689999999999999999888865 555
Q ss_pred cccEEeeeeeccc--cCCCCceEEEeCcHHHHHHHhCCC--CCCCCCceEeecccccCCccchHHHHHHHHHhc-----C
Q 048746 203 LGHEVGYSIRFED--CTSEKTILKYMTDGMLLREILSEP--NLESYSVLMVDEAHERTLSTDILFGLLKDLIKF-----R 273 (755)
Q Consensus 203 ~g~~vg~~~~~~~--~~~~~~~I~v~T~g~Ll~~l~~~~--~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~-----~ 273 (755)
++...|....... ......+|+|+||++|.+.+.... .+.++++||||||| +.........++..+... .
T Consensus 327 v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH-~~~~~~~~~~i~~~~~~~~~~~~~ 405 (936)
T 4a2w_A 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECH-NTTGNHPYNVLMTRYLEQKFNSAS 405 (936)
T ss_dssp EEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGG-GCSTTCHHHHHHHHHHHHHHTTCS
T ss_pred EEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECcc-ccCCCccHHHHHHHHHHHhhccCC
Confidence 5544442211110 011357899999999999987654 57889999999999 555554455555444442 5
Q ss_pred CCcEEEEeccCCCH----------HHH---HhhhCCCCEEEecCc---------cccceEEEecC---------------
Q 048746 274 SDLKLLISSATLDA----------EKF---SDYFGSAPIFKIPGR---------RYPVEIHYTKA--------------- 316 (755)
Q Consensus 274 ~~~~~il~SAT~~~----------~~l---~~~~~~~~~~~~~~~---------~~~v~~~~~~~--------------- 316 (755)
+..++++||||+.. +.+ ...++. ..+..... ..|........
T Consensus 406 ~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~-~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~ 484 (936)
T 4a2w_A 406 QLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDI-QAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (936)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTC-SEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCC-ceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHH
Confidence 67899999999931 111 122221 11111110 00000000000
Q ss_pred ---------------------------------------------Ccc--------------------------------
Q 048746 317 ---------------------------------------------PEA-------------------------------- 319 (755)
Q Consensus 317 ---------------------------------------------~~~-------------------------------- 319 (755)
+..
T Consensus 485 ~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~ 564 (936)
T 4a2w_A 485 SETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (936)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 000
Q ss_pred ----chH----------------------------------------HHHHHHHHHHHh----hCCCCCEEEEcCCHHHH
Q 048746 320 ----DYI----------------------------------------DAAIVTVLQIHV----TQSPGDILVFLTGQEEI 351 (755)
Q Consensus 320 ----~~~----------------------------------------~~~~~~~~~~~~----~~~~~~iLVF~~~~~~~ 351 (755)
.++ ...+..+..+.. ..+++++||||+++..+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~a 644 (936)
T 4a2w_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (936)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHH
Confidence 000 000111111221 23468999999999999
Q ss_pred HHHHHHHHHhhcccCCC---CCceEEEeccCCCCHHHHHHHhCCCCC-CCcEEEEeCCcccccCcCCCeeEEEeCCCccc
Q 048746 352 ETADEILKHRTRGLGSK---IAELIICPIYANLPTELQAKIFEPTPE-GARKVVLATNIAETSLTIDGIKYVIDPGFSKV 427 (755)
Q Consensus 352 ~~l~~~L~~~~~~~~~~---~~~~~v~~lh~~l~~~~r~~i~~~f~~-g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~ 427 (755)
+.+++.|.+.....+.. ..+.....+||+|++.+|.++++.|++ |..+|||||+++++|||+|+|++||++|.
T Consensus 645 e~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~--- 721 (936)
T 4a2w_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY--- 721 (936)
T ss_dssp HHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESC---
T ss_pred HHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCC---
Confidence 99999998751100000 012345567999999999999999999 99999999999999999999999999999
Q ss_pred ccccCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCccc
Q 048746 428 KSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHNY 473 (755)
Q Consensus 428 ~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~~ 473 (755)
|.|..+|+||+|| ||..+|.||.|+++.+.
T Consensus 722 ---------------p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 722 ---------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (936)
T ss_dssp ---------------CSCSHHHHCC--------CCCEEEEESCHHH
T ss_pred ---------------CCCHHHHHHhcCC-CCCCCCEEEEEEeCCCH
Confidence 9999999999999 99999999999988654
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=9.2e-35 Score=354.35 Aligned_cols=267 Identities=15% Similarity=0.148 Sum_probs=187.6
Q ss_pred CChHHHHHHHHHHHcCCeEEEEccCCCchhcc-HHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEee
Q 048746 131 PIYPYRDELLQAVNEYQVLVIVGETGSGKTTQ-IPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGY 209 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~-ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~ 209 (755)
.++++|.++++.+.++++++++||||||||.. ++.++.. ...+++++|++|||+||.|+++++.+ ++ ..+..++.
T Consensus 78 ~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~--~~~~~~~Lil~PtreLa~Q~~~~l~~-l~-~~~i~v~~ 153 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWL--ARKGKKSALVFPTVTLVKQTLERLQK-LA-DEKVKIFG 153 (1104)
T ss_dssp CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHH--HTTTCCEEEEESSHHHHHHHHHHHHT-TS-CTTSCEEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHH--HhcCCeEEEEechHHHHHHHHHHHHH-hh-CCCCeEEE
Confidence 45999999999999999999999999999952 3332222 24567999999999999999999988 54 34444443
Q ss_pred eeecccc----------CCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccc---------cCCc-cchHHHHHHHH
Q 048746 210 SIRFEDC----------TSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHE---------RTLS-TDILFGLLKDL 269 (755)
Q Consensus 210 ~~~~~~~----------~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHe---------r~~~-~d~~~~~l~~~ 269 (755)
..+.... ....++|+|+|||+|++++.. ..+.++++|||||||. |+++ .++....+..+
T Consensus 154 l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~i 232 (1104)
T 4ddu_A 154 FYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKA 232 (1104)
T ss_dssp ECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHH
Confidence 3332221 123489999999999887653 4567899999999992 3333 44444423333
Q ss_pred Hh-cC-----------CCcEEEEeccCCCHH-----HHHhhhCCCCEEEecCccccceEEEecCCccchHHHHHHHHHHH
Q 048746 270 IK-FR-----------SDLKLLISSATLDAE-----KFSDYFGSAPIFKIPGRRYPVEIHYTKAPEADYIDAAIVTVLQI 332 (755)
Q Consensus 270 ~~-~~-----------~~~~~il~SAT~~~~-----~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 332 (755)
.. .+ ++.++++||||+.++ .+..++. ..+.........+...+...... ... ..+
T Consensus 233 l~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-i~v~~~~~~~~~i~~~~~~~~k~---~~L----~~l 304 (1104)
T 4ddu_A 233 FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISSRSK---EKL----VEL 304 (1104)
T ss_dssp HHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-CCCCBCCCCCCCEEEEEESCCCH---HHH----HHH
T ss_pred HHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-EEeccCCCCcCCceeEEEecCHH---HHH----HHH
Confidence 32 33 678999999995222 2233332 11111112233455556555322 222 222
Q ss_pred HhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEE-eccCCCCHHHHHHHhCCCCCCCcEEEEe----CCcc
Q 048746 333 HVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIIC-PIYANLPTELQAKIFEPTPEGARKVVLA----TNIA 407 (755)
Q Consensus 333 ~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~-~lh~~l~~~~r~~i~~~f~~g~~~vlva----T~i~ 407 (755)
... .++++||||++++.++.++..|...+ +.+. .+||. |.+ ++.|++|..+|||| |+++
T Consensus 305 l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g---------~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~Tdvl 368 (1104)
T 4ddu_A 305 LEI-FRDGILIFAQTEEEGKELYEYLKRFK---------FNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKL 368 (1104)
T ss_dssp HHH-HCSSEEEEESSSHHHHHHHHHHHHTT---------CCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHH
T ss_pred HHh-cCCCEEEEECcHHHHHHHHHHHHhCC---------CCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCee
Confidence 222 24899999999999999999998853 6677 89992 555 99999999999999 9999
Q ss_pred cccCcCCC-eeEEEeCCCcc
Q 048746 408 ETSLTIDG-IKYVIDPGFSK 426 (755)
Q Consensus 408 ~~Gidip~-v~~VId~g~~k 426 (755)
++|||+|+ |++|||+|+.+
T Consensus 369 arGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 369 TRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp CCSCCCTTTCCEEEEESCCE
T ss_pred EecCcCCCCCCEEEEECCCC
Confidence 99999999 99999999966
No 45
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.1e-33 Score=325.11 Aligned_cols=309 Identities=19% Similarity=0.193 Sum_probs=212.1
Q ss_pred HhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHH---hC
Q 048746 126 ERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQE---MG 200 (755)
Q Consensus 126 ~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~---~~ 200 (755)
.++ .| +++|...++.+.+|+ |+.++||+||| +.+|.++... .+..++|++|||+||.|+++.+... +|
T Consensus 80 lG~-~p-t~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---~g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 80 TGM-FP-FKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---TGKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HSC-CC-CHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---TSSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred cCC-CC-cHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 455 78 999999999999998 99999999999 6777765432 2457999999999999998876553 45
Q ss_pred CccccEEeeeeeccccCCCCceEEEeCcHHH-HHHHhC-------CCCCCCCCceEeecccccCC-cc------------
Q 048746 201 VKLGHEVGYSIRFEDCTSEKTILKYMTDGML-LREILS-------EPNLESYSVLMVDEAHERTL-ST------------ 259 (755)
Q Consensus 201 ~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~L-l~~l~~-------~~~l~~~~~vIiDEaHer~~-~~------------ 259 (755)
..++..+|...........+++|+|+|||.| .++|.. ...++++.++|||||| +++ +.
T Consensus 153 l~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD-~mLiDea~tplIisg~~~ 231 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVD-SILIDEARTPLIISGQAA 231 (844)
T ss_dssp CCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHH-HHHTTTTTCEEEEEEEEE
T ss_pred CeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchh-hhhhhccccchhhcCCcc
Confidence 5555444421111111113579999999999 555532 2357889999999999 655 43
Q ss_pred ---chHHHHHHHHHhcC---------CCcEEE-----------------EeccCCCH--HHH-----Hhh-hCCCC--E-
Q 048746 260 ---DILFGLLKDLIKFR---------SDLKLL-----------------ISSATLDA--EKF-----SDY-FGSAP--I- 299 (755)
Q Consensus 260 ---d~~~~~l~~~~~~~---------~~~~~i-----------------l~SAT~~~--~~l-----~~~-~~~~~--~- 299 (755)
++...+.+.+...+ +..+++ ++|||+.. ..+ +.+ |.... +
T Consensus 232 ~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv 311 (844)
T 1tf5_A 232 KSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVV 311 (844)
T ss_dssp CCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEE
T ss_pred cchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEE
Confidence 24444444443443 245666 88998631 111 111 21110 0
Q ss_pred -----EEe--------cCccc--------------------------------------------------------cce
Q 048746 300 -----FKI--------PGRRY--------------------------------------------------------PVE 310 (755)
Q Consensus 300 -----~~~--------~~~~~--------------------------------------------------------~v~ 310 (755)
+.+ +|+.+ .+.
T Consensus 312 ~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~ 391 (844)
T 1tf5_A 312 EDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQ 391 (844)
T ss_dssp ETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCC
T ss_pred ecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCc
Confidence 000 01100 000
Q ss_pred EEEec---------------CCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEE
Q 048746 311 IHYTK---------------APEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIIC 375 (755)
Q Consensus 311 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~ 375 (755)
+...+ ....++....+..+...+ ..+.++||||+|++.++.++..|...+ +.+.
T Consensus 392 vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~--~~~~pvLVft~s~~~se~Ls~~L~~~g---------i~~~ 460 (844)
T 1tf5_A 392 VVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRY--MTGQPVLVGTVAVETSELISKLLKNKG---------IPHQ 460 (844)
T ss_dssp EEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH--HHTCCEEEEESCHHHHHHHHHHHHTTT---------CCCE
T ss_pred eEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHHCC---------CCEE
Confidence 00110 111222332233333322 235689999999999999999998854 6778
Q ss_pred eccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCC--------CeeEEEeCCCcccccccCCCCcccccccccCHH
Q 048746 376 PIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTID--------GIKYVIDPGFSKVKSYNPRTGMESLLVHPISKA 447 (755)
Q Consensus 376 ~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip--------~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~ 447 (755)
.+||++.+.+|..+.+.++.| .|+||||+|+||+||+ ++.+||+|++ |.|..
T Consensus 461 vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~------------------p~s~r 520 (844)
T 1tf5_A 461 VLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTER------------------HESRR 520 (844)
T ss_dssp EECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSC------------------CSSHH
T ss_pred EeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecC------------------CCCHH
Confidence 899999999988888878766 5999999999999999 8999999999 99999
Q ss_pred hHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 448 SAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 448 ~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
.|+||+|||||.| +|.++.+++.++.
T Consensus 521 ~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 521 IDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp HHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HHHhhcCccccCCCCCeEEEEecHHHH
Confidence 9999999999999 6999999987653
No 46
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.4e-33 Score=344.03 Aligned_cols=299 Identities=19% Similarity=0.188 Sum_probs=217.5
Q ss_pred CChHHHHHHHHHHHc----CC--eEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccc
Q 048746 131 PIYPYRDELLQAVNE----YQ--VLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLG 204 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~~----~~--~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g 204 (755)
..+++|.++++.+.. ++ +++++||||||||.++...++.. ...+.+++|++||++||.|+++++.+.++. .+
T Consensus 603 ~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~-~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~-~~ 680 (1151)
T 2eyq_A 603 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VDNHKQVAVLVPTTLLAQQHYDNFRDRFAN-WP 680 (1151)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHH-HTTTCEEEEECSSHHHHHHHHHHHHHHSTT-TT
T ss_pred CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHH-HHhCCeEEEEechHHHHHHHHHHHHHHhhc-CC
Confidence 349999999999775 55 99999999999995544333322 224568999999999999999999886642 22
Q ss_pred cEEeeeeeccc----------cCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCC
Q 048746 205 HEVGYSIRFED----------CTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRS 274 (755)
Q Consensus 205 ~~vg~~~~~~~----------~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~ 274 (755)
..++...++.. ......+|+|+||+.| ..+..+.++++|||||+| +. .. .....+...++
T Consensus 681 i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll----~~~~~~~~l~lvIiDEaH-~~-g~----~~~~~l~~l~~ 750 (1151)
T 2eyq_A 681 VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL----QSDVKFKDLGLLIVDEEH-RF-GV----RHKERIKAMRA 750 (1151)
T ss_dssp CCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH----HSCCCCSSEEEEEEESGG-GS-CH----HHHHHHHHHHT
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH----hCCccccccceEEEechH-hc-Ch----HHHHHHHHhcC
Confidence 23332222211 1234689999999866 345578899999999999 42 21 22333444567
Q ss_pred CcEEEEeccCCCHHHHHhhhCCCCEEEe----cCccccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHH
Q 048746 275 DLKLLISSATLDAEKFSDYFGSAPIFKI----PGRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEE 350 (755)
Q Consensus 275 ~~~~il~SAT~~~~~l~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~ 350 (755)
+.++++||||+.+..+...+.+..-..+ +....++..++........ ...++... ..+++++|||+++++
T Consensus 751 ~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i----~~~il~~l--~~g~qvlvf~~~v~~ 824 (1151)
T 2eyq_A 751 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVV----REAILREI--LRGGQVYYLYNDVEN 824 (1151)
T ss_dssp TSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHH----HHHHHHHH--TTTCEEEEECCCSSC
T ss_pred CCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHH----HHHHHHHH--hcCCeEEEEECCHHH
Confidence 7899999999966655554443322221 1223445555444332211 22222222 247899999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccc
Q 048746 351 IETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSY 430 (755)
Q Consensus 351 ~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~ 430 (755)
++.+++.|.+.. ++..+..+||+|++.+|.++++.|++|+.+|||||+++++|||+|++++||..+.
T Consensus 825 ~~~l~~~L~~~~-------p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~------ 891 (1151)
T 2eyq_A 825 IQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA------ 891 (1151)
T ss_dssp HHHHHHHHHHHC-------TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTT------
T ss_pred HHHHHHHHHHhC-------CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCC------
Confidence 999999999864 3477899999999999999999999999999999999999999999999996654
Q ss_pred cCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCc
Q 048746 431 NPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLH 471 (755)
Q Consensus 431 ~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~ 471 (755)
.+.+..+|.||+||+||.| +|.||.++++.
T Consensus 892 -----------~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 892 -----------DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp -----------TSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred -----------CCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 1357789999999999998 69999998764
No 47
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-34 Score=339.83 Aligned_cols=311 Identities=16% Similarity=0.196 Sum_probs=212.9
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHcC------CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHH
Q 048746 118 SALEMLQEERKTLPIYPYRDELLQAVNEY------QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSV 191 (755)
Q Consensus 118 ~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~ 191 (755)
..++.+.+.-. ..++++|.++++.+.++ .+++++||||||||..+...++.. ...+.+++|++||++||.|+
T Consensus 356 ~~~~~~~~~lp-f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~-l~~g~qvlvlaPtr~La~Q~ 433 (780)
T 1gm5_A 356 KLAEEFIKSLP-FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDN-YEAGFQTAFMVPTSILAIQH 433 (780)
T ss_dssp HHHHHHHHHSS-SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHH-HHHTSCEEEECSCHHHHHHH
T ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHH
Confidence 44555544322 35699999999998765 589999999999995554444433 22356899999999999999
Q ss_pred HHHHHHHhC---CccccEEeeeeecc------ccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchH
Q 048746 192 AARVSQEMG---VKLGHEVGYSIRFE------DCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDIL 262 (755)
Q Consensus 192 a~~~~~~~~---~~~g~~vg~~~~~~------~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~ 262 (755)
++++.+.+. .+++...|.....+ .......+|+|+||+.+.+ ...+.++++|||||+|..+...
T Consensus 434 ~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr~g~~q--- 506 (780)
T 1gm5_A 434 YRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----DVHFKNLGLVIIDEQHRFGVKQ--- 506 (780)
T ss_dssp HHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----CCCCSCCCEEEEESCCCC-------
T ss_pred HHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh----hhhccCCceEEecccchhhHHH---
Confidence 999988763 44433333211111 1123458999999997754 4578899999999999322111
Q ss_pred HHHHHHHHhcCCCcEEEEeccCCCHHHHHh-hhCCCCEEEec---CccccceEEEecCCccchHHHHHHHHHHHHhhCCC
Q 048746 263 FGLLKDLIKFRSDLKLLISSATLDAEKFSD-YFGSAPIFKIP---GRRYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSP 338 (755)
Q Consensus 263 ~~~l~~~~~~~~~~~~il~SAT~~~~~l~~-~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (755)
...+.....+.++++||||+.+..+.. +++...+..+. ....|+...+.... .....+..+... ...+
T Consensus 507 ---r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~---~~~~l~~~i~~~--l~~g 578 (780)
T 1gm5_A 507 ---REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMD---RVNEVYEFVRQE--VMRG 578 (780)
T ss_dssp ----CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSS---THHHHHHHHHHH--TTTS
T ss_pred ---HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccc---hHHHHHHHHHHH--HhcC
Confidence 111222335689999999996665553 34443333322 22345554444322 223333333221 2346
Q ss_pred CCEEEEcCCHHH--------HHHHHHHHHH-hhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccc
Q 048746 339 GDILVFLTGQEE--------IETADEILKH-RTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAET 409 (755)
Q Consensus 339 ~~iLVF~~~~~~--------~~~l~~~L~~-~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~ 409 (755)
++++|||++.++ ++.+++.|.+ .. +++.+..+||+|++++|..+++.|++|+.+|||||+++++
T Consensus 579 ~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~-------~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~ 651 (780)
T 1gm5_A 579 GQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVF-------PEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEV 651 (780)
T ss_dssp CCBCCBCCCC--------CHHHHHHHSGGGSCC----------CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCS
T ss_pred CcEEEEecchhhhhhhhHHHHHHHHHHHHhhhc-------CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCc
Confidence 789999997654 4455555443 21 3467888999999999999999999999999999999999
Q ss_pred cCcCCCeeEEEeCCCcccccccCCCCccccccccc-CHHhHHhhhcccCCCC-CCEEEEeccC
Q 048746 410 SLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPI-SKASAMQRAGRSGRTG-PGKCFRLYTL 470 (755)
Q Consensus 410 Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~-s~~~~~QR~GRaGR~g-~G~~~~l~~~ 470 (755)
|||+|++++||+++. |. +.+.+.||+||+||.| +|.||.++++
T Consensus 652 GIDiP~v~~VIi~d~------------------~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 652 GIDVPRANVMVIENP------------------ERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp CSCCTTCCEEEBCSC------------------SSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred cccCCCCCEEEEeCC------------------CCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 999999999999887 53 6788999999999988 6999999973
No 48
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=4.2e-34 Score=348.88 Aligned_cols=267 Identities=16% Similarity=0.126 Sum_probs=176.2
Q ss_pred HhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh-ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhC---C
Q 048746 126 ERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT-TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMG---V 201 (755)
Q Consensus 126 ~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT-~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~---~ 201 (755)
.++. | ++|.++++.+.++++++++|||||||| +++|.+... ...+++++|++|||+||.|+++++.+... .
T Consensus 54 ~g~~-p--~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~--~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i 128 (1054)
T 1gku_B 54 VGEP-R--AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFL--ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGV 128 (1054)
T ss_dssp TCSC-C--HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHH--HTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCC-H--HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHH--hhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCC
Confidence 3444 4 999999999999999999999999999 445544332 23567999999999999999999987552 3
Q ss_pred ----ccccEEeeeeecc-----ccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccc-hHHHHHHHHH-
Q 048746 202 ----KLGHEVGYSIRFE-----DCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTD-ILFGLLKDLI- 270 (755)
Q Consensus 202 ----~~g~~vg~~~~~~-----~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d-~~~~~l~~~~- 270 (755)
.++..+|...... ..... ++|+|+|||+|++.+.. +.++++||||||| ++++.. .+..++..+-
T Consensus 129 ~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~---L~~l~~lViDEah-~~l~~~~~~~~i~~~lgf 203 (1054)
T 1gku_B 129 GTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE---LGHFDFIFVDDVD-AILKASKNVDKLLHLLGF 203 (1054)
T ss_dssp SGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT---SCCCSEEEESCHH-HHHTSTHHHHHHHHHTTE
T ss_pred CccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH---hccCCEEEEeChh-hhhhccccHHHHHHHhCc
Confidence 3333333221111 11122 89999999999987654 7799999999999 555421 1122222210
Q ss_pred -------hcCCCcEEEEeccCCCHH-HHH-hhhCCCCEEEecCc---cccceEEEecCCccchHHHHHHHHHHHHhhCCC
Q 048746 271 -------KFRSDLKLLISSATLDAE-KFS-DYFGSAPIFKIPGR---RYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSP 338 (755)
Q Consensus 271 -------~~~~~~~~il~SAT~~~~-~l~-~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (755)
......+++++|||+... .+. .++.....+.+... ...+...+........ +..+.... +
T Consensus 204 ~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k~~~-------L~~ll~~~-~ 275 (1054)
T 1gku_B 204 HYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESIST-------LSSILEKL-G 275 (1054)
T ss_dssp EEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCCCTTT-------THHHHTTS-C
T ss_pred chhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEechhHHHH-------HHHHHhhc-C
Confidence 013457889999999432 111 11111111111111 2235555553222222 22222222 5
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEe----CCcccccCcCC
Q 048746 339 GDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLA----TNIAETSLTID 414 (755)
Q Consensus 339 ~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlva----T~i~~~Gidip 414 (755)
+++||||+++++++.+++.|... +.+..+||++. .+++.|++|..+|||| |+++++|||+|
T Consensus 276 ~~~LVF~~t~~~a~~l~~~L~~~----------~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip 340 (1054)
T 1gku_B 276 TGGIIYARTGEEAEEIYESLKNK----------FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLP 340 (1054)
T ss_dssp SCEEEEESSHHHHHHHHHTTTTS----------SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCT
T ss_pred CCEEEEEcCHHHHHHHHHHHhhc----------cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccC
Confidence 78999999999999999988752 56889999984 5677799999999999 99999999999
Q ss_pred Ce-eEEEeCCCc
Q 048746 415 GI-KYVIDPGFS 425 (755)
Q Consensus 415 ~v-~~VId~g~~ 425 (755)
+| ++||++|+.
T Consensus 341 ~VI~~VI~~~~P 352 (1054)
T 1gku_B 341 ERIRFAVFVGCP 352 (1054)
T ss_dssp TTCCEEEEESCC
T ss_pred CcccEEEEeCCC
Confidence 95 999999995
No 49
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.5e-33 Score=318.35 Aligned_cols=293 Identities=17% Similarity=0.175 Sum_probs=210.2
Q ss_pred CCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCc-cccEE
Q 048746 129 TLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVK-LGHEV 207 (755)
Q Consensus 129 ~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~-~g~~v 207 (755)
...++++|.++++.+.+++++++++|||||||.+...++... +.+++|++|+++|+.|+++++.+ ++.. ++...
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v~~~~ 165 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFS 165 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGG-GCGGGEEEBS
T ss_pred CCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHh-CCCcceEEEC
Confidence 356799999999999999999999999999996655555443 45899999999999999999988 7655 44333
Q ss_pred eeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCCH
Q 048746 208 GYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLDA 287 (755)
Q Consensus 208 g~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~ 287 (755)
| ......+|+|+|++.+...+.. ...++++||||||| +.....+. .+....+..++++||||+..
T Consensus 166 g-------~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~liIvDEaH-~~~~~~~~-----~~~~~~~~~~~l~lSATp~~ 230 (472)
T 2fwr_A 166 G-------RIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVH-HLPAESYV-----QIAQMSIAPFRLGLTATFER 230 (472)
T ss_dssp S-------SCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEETGG-GTTSTTTH-----HHHHTCCCSEEEEEESCCCC
T ss_pred C-------CcCCcCCEEEEEcHHHHHHHHH--hcCCCCEEEEECCc-CCCChHHH-----HHHHhcCCCeEEEEecCccC
Confidence 3 2234578999999998876531 12468999999999 55554432 24445567899999999941
Q ss_pred -----HHHHhhhCCCCEEEec-----Cc-cccce--EEEecCCc------------------------------------
Q 048746 288 -----EKFSDYFGSAPIFKIP-----GR-RYPVE--IHYTKAPE------------------------------------ 318 (755)
Q Consensus 288 -----~~l~~~~~~~~~~~~~-----~~-~~~v~--~~~~~~~~------------------------------------ 318 (755)
..+..+++. .+.... .. ..+.. ........
T Consensus 231 ~~~~~~~l~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 309 (472)
T 2fwr_A 231 EDGRHEILKEVVGG-KVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMA 309 (472)
T ss_dssp TTSGGGSHHHHTCC-EEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTT
T ss_pred CCCHHHHHHHHhCC-eEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHH
Confidence 123344432 111100 00 00000 00000000
Q ss_pred --------cch------------HHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEecc
Q 048746 319 --------ADY------------IDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIY 378 (755)
Q Consensus 319 --------~~~------------~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh 378 (755)
... .......+..+.....++++||||++.+.++.+++.|. +..+|
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------------~~~~~ 375 (472)
T 2fwr_A 310 SGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------------IPAIT 375 (472)
T ss_dssp TCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------------CCBCC
T ss_pred hccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------------cceee
Confidence 000 00112333444444567899999999999999888763 23589
Q ss_pred CCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCC
Q 048746 379 ANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGR 458 (755)
Q Consensus 379 ~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR 458 (755)
|+++..+|.++++.|++|..+|||||+++++|+|+|++++||+++. |.+...|.||+||+||
T Consensus 376 g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~------------------~~s~~~~~Q~~GR~~R 437 (472)
T 2fwr_A 376 HRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSG------------------SGSAREYIQRLGRILR 437 (472)
T ss_dssp SSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECC------------------SSCCHHHHHHHHHSBC
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECC------------------CCCHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCC----EEEEeccCcccc
Q 048746 459 TGPG----KCFRLYTLHNYH 474 (755)
Q Consensus 459 ~g~G----~~~~l~~~~~~~ 474 (755)
.|+| .+|.++++...+
T Consensus 438 ~g~~k~~~~i~~lv~~~t~e 457 (472)
T 2fwr_A 438 PSKGKKEAVLYELISRGTGE 457 (472)
T ss_dssp CCTTTCCEEEEEEEECSCC-
T ss_pred CCCCCceEEEEEEEeCCCch
Confidence 9977 577788766554
No 50
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.98 E-value=5.1e-32 Score=310.35 Aligned_cols=308 Identities=18% Similarity=0.154 Sum_probs=194.3
Q ss_pred cCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHH---hCCc
Q 048746 128 KTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQE---MGVK 202 (755)
Q Consensus 128 ~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~---~~~~ 202 (755)
+..| +++|...++.+.+|+ |+.++|||||| +.+|.++... .+..++|++|||+||.|+++.+... +|..
T Consensus 72 g~~p-~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l---~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~ 145 (853)
T 2fsf_A 72 GMRH-FDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL---TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLT 145 (853)
T ss_dssp SCCC-CHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT---TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCC-ChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCe
Confidence 4577 999999999999998 99999999999 6666664322 2457999999999999998776553 4555
Q ss_pred cccEEeeeeeccccCCCCceEEEeCcHHH-HHHHhCC-------CCCCCCCceEeecccccCC-cc--------------
Q 048746 203 LGHEVGYSIRFEDCTSEKTILKYMTDGML-LREILSE-------PNLESYSVLMVDEAHERTL-ST-------------- 259 (755)
Q Consensus 203 ~g~~vg~~~~~~~~~~~~~~I~v~T~g~L-l~~l~~~-------~~l~~~~~vIiDEaHer~~-~~-------------- 259 (755)
++..+|...........+++|+|+|||+| +++|... ..++++.++|||||| +++ +.
T Consensus 146 v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD-~mLiD~a~tpLIiSg~~~~~ 224 (853)
T 2fsf_A 146 VGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVD-SILIDEARTPLIISGPAEDS 224 (853)
T ss_dssp EEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHH-HHTTTTTTCEEEEEEC----
T ss_pred EEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchH-HHHHhcCcccccccCCCccc
Confidence 55444421111111112579999999999 6776543 356889999999999 666 32
Q ss_pred -chHHHHHHHHHhcCC--------------------CcEEE------------------------EeccCCCH--HHH--
Q 048746 260 -DILFGLLKDLIKFRS--------------------DLKLL------------------------ISSATLDA--EKF-- 290 (755)
Q Consensus 260 -d~~~~~l~~~~~~~~--------------------~~~~i------------------------l~SAT~~~--~~l-- 290 (755)
++...+.+.+....+ ..+++ ++|||... ..+
T Consensus 225 ~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~ 304 (853)
T 2fsf_A 225 SEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTA 304 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHH
Confidence 222222222222221 23332 78888621 111
Q ss_pred ---Hh-hhCC--------CCEEEe--------cCcc--------------------------------------------
Q 048746 291 ---SD-YFGS--------APIFKI--------PGRR-------------------------------------------- 306 (755)
Q Consensus 291 ---~~-~~~~--------~~~~~~--------~~~~-------------------------------------------- 306 (755)
+. +|.. ..++.+ +|+.
T Consensus 305 al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTG 384 (853)
T 2fsf_A 305 ALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTG 384 (853)
T ss_dssp ----------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEEC
T ss_pred HHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCC
Confidence 00 1100 000000 0000
Q ss_pred ------------ccceEEEec---------------CCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHH
Q 048746 307 ------------YPVEIHYTK---------------APEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILK 359 (755)
Q Consensus 307 ------------~~v~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~ 359 (755)
|.+++...+ ....++....+..+...+ ..+.++||||+|++.++.++..|.
T Consensus 385 Ta~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~--~~gqpvLVft~sie~se~Ls~~L~ 462 (853)
T 2fsf_A 385 TADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERT--AKGQPVLVGTISIEKSELVSNELT 462 (853)
T ss_dssp TTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHH
Confidence 000111111 111222222222222222 345789999999999999999999
Q ss_pred HhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCC------------------------
Q 048746 360 HRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDG------------------------ 415 (755)
Q Consensus 360 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~------------------------ 415 (755)
..+ +.+..+||++.+.++..+.+.|+.| .|+||||+|+||+||+.
T Consensus 463 ~~g---------i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~ 531 (853)
T 2fsf_A 463 KAG---------IKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKA 531 (853)
T ss_dssp HTT---------CCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHH
T ss_pred HCC---------CCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHH
Confidence 854 6778899999999998899999988 69999999999999997
Q ss_pred --------e-----eEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 416 --------I-----KYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 416 --------v-----~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
| .+||++++ |.|...|.||+|||||.| ||.+..+++.++.
T Consensus 532 ~~~~~~~~V~~~GGl~VI~te~------------------pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 532 DWQVRHDAVLEAGGLHIIGTER------------------HESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHHTTSEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HhhhhhhHHHhcCCcEEEEccC------------------CCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 4 69999999 999999999999999999 6999999987653
No 51
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.98 E-value=1.6e-31 Score=306.39 Aligned_cols=311 Identities=19% Similarity=0.164 Sum_probs=216.5
Q ss_pred HHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHH---h
Q 048746 125 EERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQE---M 199 (755)
Q Consensus 125 ~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~---~ 199 (755)
+.-+..| +++|...++.+.+|+ |+.++||+||| +.+|.++... .+..++|++||++||.|.++.+... +
T Consensus 106 R~lG~rP-~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL---~g~~v~VvTpTreLA~Qdae~m~~l~~~l 179 (922)
T 1nkt_A 106 RVLDQRP-FDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL---AGNGVHIVTVNDYLAKRDSEWMGRVHRFL 179 (922)
T ss_dssp HHHSCCC-CHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT---TTSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCC-CHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH---hCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 3334477 999999999999988 99999999999 6777765433 2457999999999999998776653 4
Q ss_pred CCccccEEeeeeeccccCCCCceEEEeCcHHH-HHHHhCC-------CCCCCCCceEeecccccCC-c------------
Q 048746 200 GVKLGHEVGYSIRFEDCTSEKTILKYMTDGML-LREILSE-------PNLESYSVLMVDEAHERTL-S------------ 258 (755)
Q Consensus 200 ~~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~L-l~~l~~~-------~~l~~~~~vIiDEaHer~~-~------------ 258 (755)
|..++..+|............++|+|+|||.| +++|... ..++++.++|||||| +++ +
T Consensus 180 GLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaD-smLiDeartPLiiSg~~ 258 (922)
T 1nkt_A 180 GLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVD-SILIDEARTPLIISGPA 258 (922)
T ss_dssp TCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHH-HHHTTGGGSCEEEEEEC
T ss_pred CCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChH-HHHHhcCccceeecCCC
Confidence 55555444421111111112579999999999 6666433 357889999999999 665 3
Q ss_pred ---cchHHHHHHHHHhcC---------CCcEEE-----------------EeccCCCH--HHH-----Hh-hhCC-----
Q 048746 259 ---TDILFGLLKDLIKFR---------SDLKLL-----------------ISSATLDA--EKF-----SD-YFGS----- 296 (755)
Q Consensus 259 ---~d~~~~~l~~~~~~~---------~~~~~i-----------------l~SAT~~~--~~l-----~~-~~~~----- 296 (755)
+++...+.+.+.... +..+++ ++|||... ..+ +. +|..
T Consensus 259 ~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYi 338 (922)
T 1nkt_A 259 DGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYI 338 (922)
T ss_dssp CCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEE
T ss_pred CcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccccee
Confidence 346666666555565 567888 89999731 221 11 1211
Q ss_pred ---CCEEEec--------Cccc--------------------------------------------------------cc
Q 048746 297 ---APIFKIP--------GRRY--------------------------------------------------------PV 309 (755)
Q Consensus 297 ---~~~~~~~--------~~~~--------------------------------------------------------~v 309 (755)
..++.+. |+.+ .+
T Consensus 339 V~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l 418 (922)
T 1nkt_A 339 VRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKL 418 (922)
T ss_dssp ECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred eecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCC
Confidence 1111111 1100 00
Q ss_pred eEEEec---------------CCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEE
Q 048746 310 EIHYTK---------------APEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELII 374 (755)
Q Consensus 310 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v 374 (755)
++...+ ....++....+..+...+ ..+.++||||+|++.++.++..|.+.+ +.+
T Consensus 419 ~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~--~~gqpvLVft~Sie~sE~Ls~~L~~~G---------i~~ 487 (922)
T 1nkt_A 419 GVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERY--AKGQPVLIGTTSVERSEYLSRQFTKRR---------IPH 487 (922)
T ss_dssp EEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHHHHHHTT---------CCC
T ss_pred CeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHHCC---------CCE
Confidence 111111 011122222222332222 235689999999999999999999854 677
Q ss_pred EeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCe--------------------------------------
Q 048746 375 CPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGI-------------------------------------- 416 (755)
Q Consensus 375 ~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v-------------------------------------- 416 (755)
..+||++...++..+.+.|+.| .|+||||+|+||+||+.+
T Consensus 488 ~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (922)
T 1nkt_A 488 NVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKE 565 (922)
T ss_dssp EEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHH
T ss_pred EEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence 8899999888888888999888 699999999999999975
Q ss_pred --------------eEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 417 --------------KYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 417 --------------~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
.+||++++ |.|...|.||+||+||.| ||.+..+++.++.
T Consensus 566 ~~~~~~~~V~~~GGlhVI~te~------------------pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 566 EASKEAKEVIEAGGLYVLGTER------------------HESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HTTHHHHHHHHTTSEEEEECSC------------------CSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHhhhHHHhcCCcEEEeccC------------------CCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 59999999 999999999999999999 6999999987653
No 52
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.98 E-value=3.9e-33 Score=318.14 Aligned_cols=301 Identities=12% Similarity=0.103 Sum_probs=204.1
Q ss_pred CChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeee
Q 048746 131 PIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYS 210 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~ 210 (755)
.++++|.++++.+.+++++++++|||||||.++..++.......+++++|++|+++|+.|+++++.+ ++...+..++..
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~-~~~~~~~~v~~~ 191 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVD-YRLFSHAMIKKI 191 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHH-TTSSCGGGEEEC
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHH-hhcCCccceEEE
Confidence 5699999999999899999999999999995554444332222345999999999999999999966 433322223322
Q ss_pred eecccc---CCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHH-HhcCCCcEEEEeccCCC
Q 048746 211 IRFEDC---TSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDL-IKFRSDLKLLISSATLD 286 (755)
Q Consensus 211 ~~~~~~---~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~-~~~~~~~~~il~SAT~~ 286 (755)
.+.... .....+|+|+|++.|.+. ....+.++++||||||| +.... . ...+ ....+..++++||||+.
T Consensus 192 ~~~~~~~~~~~~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H-~~~~~----~-~~~il~~~~~~~~~l~lSATp~ 263 (510)
T 2oca_A 192 GGGASKDDKYKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECH-LATGK----S-ISSIISGLNNCMFKFGLSGSLR 263 (510)
T ss_dssp GGGCCTTGGGCTTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGG-GCCHH----H-HHHHGGGCTTCCEEEEEESCGG
T ss_pred ecCCccccccccCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCc-CCCcc----c-HHHHHHhcccCcEEEEEEeCCC
Confidence 222111 125689999999977542 11357789999999999 54432 1 2233 33456789999999993
Q ss_pred HH-----HHHhhhCCCCEEEecC-------ccccceEE--EecCCc--------cchHH------------HHHHHHHHH
Q 048746 287 AE-----KFSDYFGSAPIFKIPG-------RRYPVEIH--YTKAPE--------ADYID------------AAIVTVLQI 332 (755)
Q Consensus 287 ~~-----~l~~~~~~~~~~~~~~-------~~~~v~~~--~~~~~~--------~~~~~------------~~~~~~~~~ 332 (755)
.. .+..+++. .+..++. ...+..+. ....+. ..+.. ..+..++..
T Consensus 264 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 342 (510)
T 2oca_A 264 DGKANIMQYVGMFGE-IFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIK 342 (510)
T ss_dssp GCSSCHHHHHHHHCS-EECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcccHHHhHHhhCC-eEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHH
Confidence 22 23334432 1111111 11111111 111111 11111 111111111
Q ss_pred HhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeC-CcccccC
Q 048746 333 HVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLAT-NIAETSL 411 (755)
Q Consensus 333 ~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT-~i~~~Gi 411 (755)
.......++|||++ .++++.+++.|.+.+ ..+..+||+++..+|.++++.|++|..+||||| +++++|+
T Consensus 343 ~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~---------~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~Gi 412 (510)
T 2oca_A 343 LAQKDENAFVMFKH-VSHGKAIFDLIKNEY---------DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGI 412 (510)
T ss_dssp HHTTTCEEEEEESS-HHHHHHHHHHHHTTC---------SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSC
T ss_pred HHhcCCCeEEEEec-HHHHHHHHHHHHHcC---------CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccc
Confidence 12223445666666 888988999888743 368889999999999999999999999999999 9999999
Q ss_pred cCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCCCE-EEEecc
Q 048746 412 TIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGPGK-CFRLYT 469 (755)
Q Consensus 412 dip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~-~~~l~~ 469 (755)
|+|++++||.++. |.+..+|.||+||+||.|+|. ++.+|+
T Consensus 413 Dip~v~~vi~~~~------------------~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 413 SVKNLHHVVLAHG------------------VKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCCSEEEEEESSC------------------CCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccccCcEEEEeCC------------------CCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999998 899999999999999999754 666766
No 53
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.97 E-value=9.5e-31 Score=303.57 Aligned_cols=300 Identities=16% Similarity=0.158 Sum_probs=183.4
Q ss_pred CChHHHHHHHHHHHc-----CCeEEEEccCCCchhccHHHHHHH---hccc-----CCCccccCccHHHHHHHHH-HHHH
Q 048746 131 PIYPYRDELLQAVNE-----YQVLVIVGETGSGKTTQIPQYLHE---AGYT-----KQGKVGCTQPRRVAAMSVA-ARVS 196 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~~-----~~~vii~apTGsGKT~~ip~~l~~---~~~~-----~~~~ilv~~P~r~la~q~a-~~~~ 196 (755)
.++++|.++++.+.. ++++++++|||||||.++..++.. ..+. .+++++|++||++|+.|+. +.+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 469999999998765 477999999999999554444332 2211 4569999999999999998 5444
Q ss_pred HHhCCccccEEeeeeeccccCCCCceEEEeCcHHHHHHHhC-----CCCCCCCCceEeecccccCCccchHHHHHHHHHh
Q 048746 197 QEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILS-----EPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK 271 (755)
Q Consensus 197 ~~~~~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~-----~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~ 271 (755)
. ++..++... ........+|+|+|++.|...+.. ......+++||||||| |+...+ ....+.++.
T Consensus 258 ~-~~~~~~~~~------~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH-~~~~~~--~~~~~~il~ 327 (590)
T 3h1t_A 258 P-FGDARHKIE------GGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECH-RGSARD--NSNWREILE 327 (590)
T ss_dssp T-TCSSEEECC------C--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHHHH
T ss_pred h-cchhhhhhh------ccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCc-cccccc--hHHHHHHHH
Confidence 3 443322111 122345679999999999886532 2235678999999999 665432 122344444
Q ss_pred cCCCcEEEEeccCCC---HHHHHhhhCCCCEEEec-------CccccceEEEecCC------------------------
Q 048746 272 FRSDLKLLISSATLD---AEKFSDYFGSAPIFKIP-------GRRYPVEIHYTKAP------------------------ 317 (755)
Q Consensus 272 ~~~~~~~il~SAT~~---~~~l~~~~~~~~~~~~~-------~~~~~v~~~~~~~~------------------------ 317 (755)
..+..++|+||||+. ...+..+|+. ++.... +...|.........
T Consensus 328 ~~~~~~~l~lTATP~~~~~~~~~~~f~~-~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (590)
T 3h1t_A 328 YFEPAFQIGMTATPLREDNRDTYRYFGN-PIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGE 406 (590)
T ss_dssp HSTTSEEEEEESSCSCTTTHHHHHHSCS-CSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------------
T ss_pred hCCcceEEEeccccccccchhHHHHcCC-ceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccccccc
Confidence 455688999999982 3456667764 222211 11111111111000
Q ss_pred --ccc---------hHHHHHHHHHHHH-hhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHH
Q 048746 318 --EAD---------YIDAAIVTVLQIH-VTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTEL 385 (755)
Q Consensus 318 --~~~---------~~~~~~~~~~~~~-~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 385 (755)
..+ ........+.... ...+.+++||||++++.++.+++.|.+........ ..-.+..+||+++. +
T Consensus 407 ~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~-~~~~~~~i~g~~~~-~ 484 (590)
T 3h1t_A 407 YQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRK-HPDYVARVTSEEGK-I 484 (590)
T ss_dssp --CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTT-CTTSEEECSSTTHH-H
T ss_pred CCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhcc-CCCeEEEEeCCChH-H
Confidence 000 0111112222222 22446899999999999999999998865321111 11236778999764 7
Q ss_pred HHHHhCCCCCCCcE---EEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC
Q 048746 386 QAKIFEPTPEGARK---VVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP 461 (755)
Q Consensus 386 r~~i~~~f~~g~~~---vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~ 461 (755)
|..+++.|++|..+ |||||+++++|||+|++++||+++. |.|...|+||+||+||.++
T Consensus 485 r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~------------------~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 485 GKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARV------------------VNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESC------------------CCCHHHHHHHHTTSCCCBG
T ss_pred HHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEec------------------CCChHHHHHHHhhhcccCc
Confidence 99999999998766 8999999999999999999999888 9999999999999999885
No 54
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.6e-28 Score=250.45 Aligned_cols=182 Identities=36% Similarity=0.661 Sum_probs=161.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccC----CCccccCccHHHHHHHHHHH
Q 048746 119 ALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTK----QGKVGCTQPRRVAAMSVAAR 194 (755)
Q Consensus 119 ~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~----~~~ilv~~P~r~la~q~a~~ 194 (755)
.+..+.+.+..+|++++|.++++.+.++++++++||||||||++++.++.+..... +.++++++|+|+++.|++++
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~ 128 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAER 128 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHH
Confidence 35567778889999999999999999999999999999999988887776543322 34899999999999999999
Q ss_pred HHHHhCCccccEEeeeeeccccCC-CCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcC
Q 048746 195 VSQEMGVKLGHEVGYSIRFEDCTS-EKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFR 273 (755)
Q Consensus 195 ~~~~~~~~~g~~vg~~~~~~~~~~-~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~ 273 (755)
++..++..+|..+|+.++++.... ..++|+|+|||+|++.+.. .+.++++|||||||+|+++.++....++.+....
T Consensus 129 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~ 206 (235)
T 3llm_A 129 VAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY 206 (235)
T ss_dssp HHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC
Confidence 999999999999999998887665 6789999999999999876 4899999999999988899999988899998888
Q ss_pred CCcEEEEeccCCCHHHHHhhhCCCCEEEe
Q 048746 274 SDLKLLISSATLDAEKFSDYFGSAPIFKI 302 (755)
Q Consensus 274 ~~~~~il~SAT~~~~~l~~~~~~~~~~~~ 302 (755)
++.|+++||||++.+.+++||+++|++.+
T Consensus 207 ~~~~~il~SAT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 207 PEVRIVLMSATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp TTSEEEEEECSSCCHHHHHHTTSCCCEEC
T ss_pred CCCeEEEEecCCCHHHHHHHcCCCCEEeC
Confidence 89999999999988889999999988753
No 55
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.94 E-value=6.2e-27 Score=283.72 Aligned_cols=313 Identities=14% Similarity=0.127 Sum_probs=207.0
Q ss_pred CCChHHHHHHHHHHHc--CCeEEEEccCCCchhccHHHHHHHhc-ccCCCccccCccHHHHHHHHHHHHHHHhCCccccE
Q 048746 130 LPIYPYRDELLQAVNE--YQVLVIVGETGSGKTTQIPQYLHEAG-YTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHE 206 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~--~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~ 206 (755)
..++++|.+++..+.. +..+|++++||+|||.++..++.... ....++++|++|+ .|+.|....+.+.++.++...
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~ 230 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALF 230 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEEC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEE
Confidence 4569999999988665 45899999999999965554444331 1223489999999 999999999988887665433
Q ss_pred Eeeeee----ccccCCCCceEEEeCcHHHHHHHhCC--CCCCCCCceEeecccccCCccc----hHHHHHHHHHhcCCCc
Q 048746 207 VGYSIR----FEDCTSEKTILKYMTDGMLLREILSE--PNLESYSVLMVDEAHERTLSTD----ILFGLLKDLIKFRSDL 276 (755)
Q Consensus 207 vg~~~~----~~~~~~~~~~I~v~T~g~Ll~~l~~~--~~l~~~~~vIiDEaHer~~~~d----~~~~~l~~~~~~~~~~ 276 (755)
.|.... .........+|+|+|++.+.+..... ....++++||||||| +..+.. .....++.+.. ...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH-~~kn~~~~~s~~~~~l~~L~~--~~~ 307 (968)
T 3dmq_A 231 DDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAH-HLVWSEDAPSREYQAIEQLAE--HVP 307 (968)
T ss_dssp CHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSS-CCCCBTTBCCHHHHHHHHHHT--TCS
T ss_pred ccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhH-hhcCCCCcchHHHHHHHHHhh--cCC
Confidence 221100 00112235689999999886421100 023478999999999 443322 11233333322 334
Q ss_pred EEEEeccCCCH---H---HHHhhhCCC-----------------------------------------------------
Q 048746 277 KLLISSATLDA---E---KFSDYFGSA----------------------------------------------------- 297 (755)
Q Consensus 277 ~~il~SAT~~~---~---~l~~~~~~~----------------------------------------------------- 297 (755)
++++||||+-. . .+..++...
T Consensus 308 ~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~ 387 (968)
T 3dmq_A 308 GVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQ 387 (968)
T ss_dssp SEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGG
T ss_pred cEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHh
Confidence 69999999821 1 111111000
Q ss_pred ---------------------------CEEEecCc----cccc---eEEEecCCc-------------------------
Q 048746 298 ---------------------------PIFKIPGR----RYPV---EIHYTKAPE------------------------- 318 (755)
Q Consensus 298 ---------------------------~~~~~~~~----~~~v---~~~~~~~~~------------------------- 318 (755)
.++....+ .+|. .......+.
T Consensus 388 ~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (968)
T 3dmq_A 388 AANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDM 467 (968)
T ss_dssp GTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhh
Confidence 00000000 0100 000010000
Q ss_pred ----------------cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCC
Q 048746 319 ----------------ADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLP 382 (755)
Q Consensus 319 ----------------~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~ 382 (755)
..........+..+....+++++||||+++..++.++..|.... ++.+..+||+|+
T Consensus 468 l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~--------g~~~~~lhG~~~ 539 (968)
T 3dmq_A 468 LYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRERE--------GIRAAVFHEGMS 539 (968)
T ss_dssp HCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTT--------CCCEEEECTTSC
T ss_pred cChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHc--------CCcEEEEeCCCC
Confidence 00001223344444445668899999999999999999998532 377899999999
Q ss_pred HHHHHHHhCCCCCCC--cEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC
Q 048746 383 TELQAKIFEPTPEGA--RKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG 460 (755)
Q Consensus 383 ~~~r~~i~~~f~~g~--~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g 460 (755)
+.+|..+++.|++|. .+|||||+++++|+|+|++++||+++. |.+...|.||+||+||.|
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~------------------p~~~~~~~Q~~GR~~R~G 601 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDL------------------PFNPDLLEQRIGRLDRIG 601 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSC------------------CSSHHHHHHHHHTTSCSS
T ss_pred HHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecC------------------CCCHHHHHHHhhccccCC
Confidence 999999999999998 999999999999999999999999999 999999999999999999
Q ss_pred C-C--EEEEeccCcc
Q 048746 461 P-G--KCFRLYTLHN 472 (755)
Q Consensus 461 ~-G--~~~~l~~~~~ 472 (755)
. | .+|.++.+..
T Consensus 602 q~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 602 QAHDIQIHVPYLEKT 616 (968)
T ss_dssp SCSCCEEEEEEETTS
T ss_pred CCceEEEEEecCCCh
Confidence 4 4 4555555543
No 56
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=6.5e-27 Score=234.36 Aligned_cols=184 Identities=20% Similarity=0.301 Sum_probs=155.6
Q ss_pred EEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHh
Q 048746 311 IHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIF 390 (755)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~ 390 (755)
..+...+...... .+..++...+++++||||+++.+++.+++.|...+ +.+..+||+|++.+|..++
T Consensus 8 ~~~~~~~~~~k~~----~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---------~~~~~lhg~~~~~~r~~~~ 74 (212)
T 3eaq_A 8 EEAVPAPVRGRLE----VLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---------HPAQALHGDLSQGERERVL 74 (212)
T ss_dssp CEEEECCTTSHHH----HHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHT---------CCEEEECSSSCHHHHHHHH
T ss_pred eeEEeCCHHHHHH----HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC---------CCEEEEECCCCHHHHHHHH
Confidence 3444444444444 44444445567899999999999999999998853 7789999999999999999
Q ss_pred CCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEecc
Q 048746 391 EPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYT 469 (755)
Q Consensus 391 ~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~ 469 (755)
+.|++|..+|||||+++++|+|+|++++||++|+ |.+..+|+||+|||||.| +|.|+.|++
T Consensus 75 ~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~l~~ 136 (212)
T 3eaq_A 75 GAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRL------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYG 136 (212)
T ss_dssp HHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSC------------------CSSHHHHHHHHTTBCCCC--BEEEEEEC
T ss_pred HHHHCCCCeEEEecChhhcCCCCccCcEEEECCC------------------CcCHHHHHHHhcccCCCCCCCeEEEEEc
Confidence 9999999999999999999999999999999999 999999999999999998 699999999
Q ss_pred Ccc--------------ccccCCCCCccchhccCchHHHHHHHHcCCCCCCcC-----CCCCCCcHHHHHHHHHHH
Q 048746 470 LHN--------------YHKDMDDNTVPEIQRTNLANVVLILKSLGIDDLVNF-----DFIDPPPEEALLKALELL 526 (755)
Q Consensus 470 ~~~--------------~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~-----~~~~~p~~~~i~~a~~~L 526 (755)
+.+ + ..+.....++|.+..+..+++.++.++..+...| +++++|+++.+..|+..|
T Consensus 137 ~~~~~~~~~i~~~~~~~~-~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 137 PRERRDVEALERAVGRRF-KRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp GGGHHHHHHHHHHHSSCC-EECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCcC-eecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 876 3 3466777889999999999999998876555555 578888999999998766
No 57
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.93 E-value=7.8e-26 Score=271.95 Aligned_cols=311 Identities=13% Similarity=0.058 Sum_probs=202.5
Q ss_pred ChHHHHHHHHHHHc--------------CCeEEEEccCCCchhccHHHHHHHhc-ccCCCccccCccHHHHHHHHHHHHH
Q 048746 132 IYPYRDELLQAVNE--------------YQVLVIVGETGSGKTTQIPQYLHEAG-YTKQGKVGCTQPRRVAAMSVAARVS 196 (755)
Q Consensus 132 l~~~Q~~~l~~i~~--------------~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~ilv~~P~r~la~q~a~~~~ 196 (755)
++++|.++++.+.. +++.+++++||||||..+..++.... .....++||++||++|+.|+.+.+.
T Consensus 272 ~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f~ 351 (1038)
T 2w00_A 272 MRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQ 351 (1038)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHHH
Confidence 49999999998654 36899999999999944322222211 1123589999999999999998887
Q ss_pred HHhCCccccEEeeeeec--cccCCCCceEEEeCcHHHHHHHhCC---CCCCCCCceEeecccccCCccchHHHHHHHHHh
Q 048746 197 QEMGVKLGHEVGYSIRF--EDCTSEKTILKYMTDGMLLREILSE---PNLESYSVLMVDEAHERTLSTDILFGLLKDLIK 271 (755)
Q Consensus 197 ~~~~~~~g~~vg~~~~~--~~~~~~~~~I~v~T~g~Ll~~l~~~---~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~ 271 (755)
......+.. +..... ........+|+|+|++.|...+... +.+..+.+||+|||| |+...++ .+.+..
T Consensus 352 ~f~~~~v~~--~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAH-rs~~~~~----~~~I~~ 424 (1038)
T 2w00_A 352 RFSPDSVNG--SENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECH-RSQFGEA----QKNLKK 424 (1038)
T ss_dssp TTSTTCSSS--SCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCC-TTHHHHH----HHHHHH
T ss_pred Hhccccccc--ccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccc-hhcchHH----HHHHHH
Confidence 632211110 100000 0011346789999999999877543 246678999999999 7765433 344445
Q ss_pred cCCCcEEEEeccCCCH-------HHHHhhhCCCCEEEe-------cCccccceEEEecCCc-------------------
Q 048746 272 FRSDLKLLISSATLDA-------EKFSDYFGSAPIFKI-------PGRRYPVEIHYTKAPE------------------- 318 (755)
Q Consensus 272 ~~~~~~~il~SAT~~~-------~~l~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~------------------- 318 (755)
..++.++++||||+.. .....+|+. ++... .|...|+.+.|.....
T Consensus 425 ~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~-~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~ 503 (1038)
T 2w00_A 425 KFKRYYQFGFTGTPIFPENALGSETTASVFGR-ELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAEN 503 (1038)
T ss_dssp HCSSEEEEEEESSCCCSTTCTTSCCHHHHHCS-EEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCS
T ss_pred hCCcccEEEEeCCccccccchhhhHHHHHhCC-eeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHH
Confidence 5677899999999932 245667764 22221 1333455554542110
Q ss_pred ------cchHHHHHHHHHHHHhh--------CCCCCEEEEcCCHHHHHHHHHHHHHhhccc---CCCCCceEE-EeccCC
Q 048746 319 ------ADYIDAAIVTVLQIHVT--------QSPGDILVFLTGQEEIETADEILKHRTRGL---GSKIAELII-CPIYAN 380 (755)
Q Consensus 319 ------~~~~~~~~~~~~~~~~~--------~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~---~~~~~~~~v-~~lh~~ 380 (755)
...+...+..++..... ..++++||||+++..+..+++.|.+..... ......+.+ +.+||+
T Consensus 504 ~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~ 583 (1038)
T 2w00_A 504 QQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFA 583 (1038)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCC
Confidence 00111222223222211 124589999999999999999998865221 011112333 445542
Q ss_pred ----------C----------CHH-----------------------------HHHHHhCCCCCCCcEEEEeCCcccccC
Q 048746 381 ----------L----------PTE-----------------------------LQAKIFEPTPEGARKVVLATNIAETSL 411 (755)
Q Consensus 381 ----------l----------~~~-----------------------------~r~~i~~~f~~g~~~vlvaT~i~~~Gi 411 (755)
+ ++. +|..+.+.|++|..+|||+|+++.+|+
T Consensus 584 ~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGf 663 (1038)
T 2w00_A 584 ANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGF 663 (1038)
T ss_dssp C------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSC
T ss_pred CccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCc
Confidence 2 221 477888999999999999999999999
Q ss_pred cCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC-----CEEEEecc
Q 048746 412 TIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP-----GKCFRLYT 469 (755)
Q Consensus 412 dip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~-----G~~~~l~~ 469 (755)
|+|.+ .|+..+. |.+...|+||+||+||.++ |.++.+..
T Consensus 664 DiP~l-~tlylDk------------------pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 664 DAPTL-NTLFVDK------------------NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp CCTTE-EEEEEES------------------CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred Ccccc-cEEEEcc------------------CCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 99999 5676777 9999999999999999985 55555554
No 58
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.93 E-value=1.6e-24 Score=243.21 Aligned_cols=166 Identities=20% Similarity=0.240 Sum_probs=125.1
Q ss_pred cEEEEeccCC--CHHHHHhhhCCCCEEEecCccc--cceEE-EecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHH
Q 048746 276 LKLLISSATL--DAEKFSDYFGSAPIFKIPGRRY--PVEIH-YTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEE 350 (755)
Q Consensus 276 ~~~il~SAT~--~~~~l~~~~~~~~~~~~~~~~~--~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~ 350 (755)
.++.+||+|. ..+.|.+.++ ..++.+|.... .++.. .......++....+..+...+. .+.++||||+|++.
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY~-l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~--~gqpVLVFt~S~e~ 486 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVYG-MEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYK--KGQPVLVGTTSIEK 486 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHSC-CCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHH--HTCCEEEEESSHHH
T ss_pred hHHeEECCCCchHHHHHHHHhC-CeEEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhh--CCCCEEEEECCHHH
Confidence 4799999999 4557777775 55777765421 11110 1112333444444444444332 25789999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCC--------CeeEEEeC
Q 048746 351 IETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTID--------GIKYVIDP 422 (755)
Q Consensus 351 ~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip--------~v~~VId~ 422 (755)
++.++..|.+.+ +....+||+..+.++..+...++.| .|+||||+|+||+||+ ++.+||++
T Consensus 487 sE~Ls~~L~~~G---------i~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInt 555 (822)
T 3jux_A 487 SELLSSMLKKKG---------IPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGT 555 (822)
T ss_dssp HHHHHHHHHTTT---------CCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEES
T ss_pred HHHHHHHHHHCC---------CCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEec
Confidence 999999998743 6778899997666666666666666 5999999999999998 67799999
Q ss_pred CCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 423 GFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 423 g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
++ |.|...|.||+|||||.| +|.++.+++.++.
T Consensus 556 e~------------------Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 556 ER------------------HESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp SC------------------CSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred CC------------------CCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 99 999999999999999999 6999999987663
No 59
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.93 E-value=8e-26 Score=256.99 Aligned_cols=308 Identities=14% Similarity=0.142 Sum_probs=193.8
Q ss_pred CCChHHHHHHHHHH----HcCCeEEEEccCCCchhccHHHHHHHhc-ccCCCccccCccHHHHHHHHHHHHHHHhC-Ccc
Q 048746 130 LPIYPYRDELLQAV----NEYQVLVIVGETGSGKTTQIPQYLHEAG-YTKQGKVGCTQPRRVAAMSVAARVSQEMG-VKL 203 (755)
Q Consensus 130 lPl~~~Q~~~l~~i----~~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~ilv~~P~r~la~q~a~~~~~~~~-~~~ 203 (755)
..++++|.++++.+ ..+..+|+..+||+|||.++..++.... ....++++|++| ..|+.|..+.+.+... ..+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceE
Confidence 34699999998875 4578899999999999955444443321 123358999999 5688999988887542 222
Q ss_pred ccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEecc
Q 048746 204 GHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSA 283 (755)
Q Consensus 204 g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SA 283 (755)
....|. .........+|+++|++.+.+... ....++++||+|||| +..+.... ..+.+... +..+.+++||
T Consensus 115 ~~~~g~---~~~~~~~~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH-~~kn~~~~--~~~~l~~l-~~~~~l~LTa 185 (500)
T 1z63_A 115 AVFHED---RSKIKLEDYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQ-NIKNPQTK--IFKAVKEL-KSKYRIALTG 185 (500)
T ss_dssp EECSSS---TTSCCGGGSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGG-GGSCTTSH--HHHHHHTS-CEEEEEEECS
T ss_pred EEEecC---chhccccCCcEEEeeHHHHhccch--hcCCCcCEEEEeCcc-ccCCHhHH--HHHHHHhh-ccCcEEEEec
Confidence 111111 111122356899999999865432 122467899999999 55443311 22223223 3467899999
Q ss_pred CC---CHHHHH---hhhCC--------------------------------CCEEEecCc-------cccceE---EEec
Q 048746 284 TL---DAEKFS---DYFGS--------------------------------APIFKIPGR-------RYPVEI---HYTK 315 (755)
Q Consensus 284 T~---~~~~l~---~~~~~--------------------------------~~~~~~~~~-------~~~v~~---~~~~ 315 (755)
|+ +...+. .++.. .+++..... ..|... .+..
T Consensus 186 TP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~ 265 (500)
T 1z63_A 186 TPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCN 265 (500)
T ss_dssp SCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcC
Confidence 99 222211 11100 111110000 111111 1111
Q ss_pred CCccc---hH------------------------------------------------HHHHHHHHHHHh--hCCCCCEE
Q 048746 316 APEAD---YI------------------------------------------------DAAIVTVLQIHV--TQSPGDIL 342 (755)
Q Consensus 316 ~~~~~---~~------------------------------------------------~~~~~~~~~~~~--~~~~~~iL 342 (755)
..... |. ...+..+.++.. ...+.++|
T Consensus 266 l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~l 345 (500)
T 1z63_A 266 LTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIA 345 (500)
T ss_dssp CCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEE
Confidence 11100 00 000111111111 12467999
Q ss_pred EEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCC-CcE-EEEeCCcccccCcCCCeeEEE
Q 048746 343 VFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEG-ARK-VVLATNIAETSLTIDGIKYVI 420 (755)
Q Consensus 343 VF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g-~~~-vlvaT~i~~~Gidip~v~~VI 420 (755)
||++....++.+...|.... +..+..+||++++.+|.++++.|++| ..+ +|+||+++++|+|+|++++||
T Consensus 346 vF~~~~~~~~~l~~~l~~~~--------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi 417 (500)
T 1z63_A 346 IFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI 417 (500)
T ss_dssp EECSCHHHHHHHHHHHHHHH--------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEE
T ss_pred EEEehHHHHHHHHHHHHHhh--------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEE
Confidence 99999999999999998742 25567799999999999999999888 454 799999999999999999999
Q ss_pred eCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC---CEEEEeccCccc
Q 048746 421 DPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP---GKCFRLYTLHNY 473 (755)
Q Consensus 421 d~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~---G~~~~l~~~~~~ 473 (755)
+++. |.+...+.||+||++|.|. ..+|+|+++...
T Consensus 418 ~~d~------------------~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ti 455 (500)
T 1z63_A 418 HFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 455 (500)
T ss_dssp ESSC------------------CSCC---CHHHHTTTTTTTTSCEEEEEEEETTSH
T ss_pred EeCC------------------CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCH
Confidence 9999 9999999999999999994 456888876544
No 60
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=2.2e-26 Score=241.43 Aligned_cols=191 Identities=19% Similarity=0.291 Sum_probs=159.8
Q ss_pred ceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHH
Q 048746 309 VEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAK 388 (755)
Q Consensus 309 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 388 (755)
++.++...+..++.+ .+..++....++++||||+++++++.+++.|... ++.+..+||+|++.+|..
T Consensus 3 v~~~~i~~~~~~K~~----~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~l~~~~r~~ 69 (300)
T 3i32_A 3 YEEEAVPAPVRGRLE----VLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDMSQGERER 69 (300)
T ss_dssp SEEEEEECCSSSHHH----HHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT---------TCCEEEECSCCCTHHHHH
T ss_pred eEEEEEECCHHHHHH----HHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHH
Confidence 456666666666555 3334444445789999999999999999999874 377899999999999999
Q ss_pred HhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEe
Q 048746 389 IFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRL 467 (755)
Q Consensus 389 i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l 467 (755)
+++.|++|.++|||||+++++|+|+|+|++|||+|+ |.+..+|+||+|||||.| +|.||.|
T Consensus 70 ~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~g~~G~~i~l 131 (300)
T 3i32_A 70 VMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRM------------------PDRAEAYQHRSGRTGRAGRGGRVVLL 131 (300)
T ss_dssp HHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSC------------------CSSTTHHHHHHTCCC-----CEEEEE
T ss_pred HHHHhhcCCceEEEEechhhcCccccceeEEEEcCC------------------CCCHHHHHHHccCcCcCCCCceEEEE
Confidence 999999999999999999999999999999999999 999999999999999998 7999999
Q ss_pred ccCcc--------------ccccCCCCCccchhccCchHHHHHHHHcCCCCCCcC-----CCCCCCcHHHHHHHHHHHHH
Q 048746 468 YTLHN--------------YHKDMDDNTVPEIQRTNLANVVLILKSLGIDDLVNF-----DFIDPPPEEALLKALELLFA 528 (755)
Q Consensus 468 ~~~~~--------------~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~-----~~~~~p~~~~i~~a~~~L~~ 528 (755)
|++.+ + ..+.....|||.+..+..+++.++.++..++..| .++++|+.+.+..|+..|..
T Consensus 132 ~~~~e~~~~~~ie~~~~~~~-~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~ 210 (300)
T 3i32_A 132 YGPRERRDVEALERAVGRRF-KRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLG 210 (300)
T ss_dssp ECSSTHHHHHHHHHHHTCCC-EECCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred eChHHHHHHHHHHHHhCCcc-eEeCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhc
Confidence 99876 3 3567778899999999999999988776555555 56788999999999999976
Q ss_pred ccC
Q 048746 529 LSA 531 (755)
Q Consensus 529 ~g~ 531 (755)
...
T Consensus 211 ~~~ 213 (300)
T 3i32_A 211 GAP 213 (300)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 61
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=228.82 Aligned_cols=193 Identities=16% Similarity=0.119 Sum_probs=144.5
Q ss_pred ccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcC--CeEEEEccCCCchh--ccHHHHHHHhcccCCCccccC
Q 048746 106 LHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEY--QVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCT 181 (755)
Q Consensus 106 ~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~--~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~ 181 (755)
...+|.++++++.+++.+.+.++..| +++|.++++.+..+ ++++++|||||||| +++|.+-.......+++++|+
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~p-t~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil 168 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRP-SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSC-CHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEE
Confidence 35689999999999999999999999 99999999999987 99999999999999 344444322222234589999
Q ss_pred ccHHHHHHHHHHHHHHHhCCccccEEeeeeeccc---cCCCCceEEEeCcHHHHHHHhCC--CCCCCCCceEeecccccC
Q 048746 182 QPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED---CTSEKTILKYMTDGMLLREILSE--PNLESYSVLMVDEAHERT 256 (755)
Q Consensus 182 ~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~---~~~~~~~I~v~T~g~Ll~~l~~~--~~l~~~~~vIiDEaHer~ 256 (755)
+|||+||.|+++.+........+..+++.++... ......+|+|+|||+|++++... ..+.++++||||||| ++
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad-~l 247 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD-VM 247 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH-HH
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH-HH
Confidence 9999999999988877543322333333333222 22345789999999999999653 368899999999999 66
Q ss_pred Cc-cchHHHHHHHHHhcCCCcEEEEeccCCC--HHHHHhhhCCCCEE
Q 048746 257 LS-TDILFGLLKDLIKFRSDLKLLISSATLD--AEKFSDYFGSAPIF 300 (755)
Q Consensus 257 ~~-~d~~~~~l~~~~~~~~~~~~il~SAT~~--~~~l~~~~~~~~~~ 300 (755)
++ ..+...+...+...+++.|+++||||++ ...+++.+...|++
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~ 294 (300)
T 3fmo_B 248 IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNV 294 (300)
T ss_dssp HHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEE
T ss_pred hhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeE
Confidence 66 4555554444444667899999999994 45677766666654
No 62
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.91 E-value=1e-24 Score=223.43 Aligned_cols=202 Identities=20% Similarity=0.151 Sum_probs=153.0
Q ss_pred ccCCCCcccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhc---
Q 048746 97 VIDGENLDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAG--- 171 (755)
Q Consensus 97 ~~~g~~~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~--- 171 (755)
.+.|...+.++.+|.++++++.+++.+.+.++..| +++|.++++.+.++++++++|||||||| +++|.+.....
T Consensus 18 ~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~ 96 (242)
T 3fe2_A 18 TVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEP-TAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF 96 (242)
T ss_dssp EEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSC-CHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC
T ss_pred EEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc
Confidence 44678888999999999999999999999999888 9999999999999999999999999999 45554433221
Q ss_pred --ccCCCccccCccHHHHHHHHHHHHHHHh---CCccccEEeeeeeccc--cCCCCceEEEeCcHHHHHHHhCCC-CCCC
Q 048746 172 --YTKQGKVGCTQPRRVAAMSVAARVSQEM---GVKLGHEVGYSIRFED--CTSEKTILKYMTDGMLLREILSEP-NLES 243 (755)
Q Consensus 172 --~~~~~~ilv~~P~r~la~q~a~~~~~~~---~~~~g~~vg~~~~~~~--~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~ 243 (755)
...+++++|++|||+|+.|+++.+.+.. +..++...|....... ....+++|+|+||++|++.+.... .+.+
T Consensus 97 ~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 97 LERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred cccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCccc
Confidence 1235589999999999999988776642 4443333331111000 011347899999999999886554 6889
Q ss_pred CCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCC--HHHHHhhhCCCCEE
Q 048746 244 YSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLD--AEKFSDYFGSAPIF 300 (755)
Q Consensus 244 ~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~--~~~l~~~~~~~~~~ 300 (755)
+++||||||| +..+.++...+...+...+++.|+++||||++ ...+.+.+...|+.
T Consensus 177 ~~~lViDEah-~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~ 234 (242)
T 3fe2_A 177 TTYLVLDEAD-RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIH 234 (242)
T ss_dssp CCEEEETTHH-HHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEE
T ss_pred ccEEEEeCHH-HHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEE
Confidence 9999999999 67777777766666666778899999999995 44666655555554
No 63
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.91 E-value=2.8e-24 Score=219.35 Aligned_cols=198 Identities=16% Similarity=0.141 Sum_probs=143.5
Q ss_pred CCCcccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcc--cCCCc
Q 048746 100 GENLDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGY--TKQGK 177 (755)
Q Consensus 100 g~~~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~ 177 (755)
..+.+.+..+|+++++++.+++.+.+.++..| +++|.++++.+.++++++++||||||||......++.... ..+.+
T Consensus 22 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~-~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~ 100 (237)
T 3bor_A 22 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKP-SAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQ 100 (237)
T ss_dssp -----CCCCSGGGSCCCHHHHHHHHHHTCCSC-CHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCC
T ss_pred cCCCCCccCChhhcCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCce
Confidence 44556677889999999999999999998888 9999999999999999999999999999544444433322 23458
Q ss_pred cccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccc-------cCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEe
Q 048746 178 VGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED-------CTSEKTILKYMTDGMLLREILSEP-NLESYSVLMV 249 (755)
Q Consensus 178 ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~-------~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIi 249 (755)
++|++|||+|+.|+++.+.+.. ...+..++....... ......+|+|+||++|.+.+.... .+.++++|||
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 101 ALVLAPTRELAQQIQKVILALG-DYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp EEEECSSHHHHHHHHHHHHHHT-TTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred EEEEECcHHHHHHHHHHHHHHh-hhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 9999999999999999888743 222222221111111 112337899999999999887653 6788999999
Q ss_pred ecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCCH--HHHHhhhCCCCEE
Q 048746 250 DEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLDA--EKFSDYFGSAPIF 300 (755)
Q Consensus 250 DEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~--~~l~~~~~~~~~~ 300 (755)
|||| +..+.++...+...+...+++.++++||||++. ..+.+.+...|+.
T Consensus 180 DEah-~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~ 231 (237)
T 3bor_A 180 DEAD-EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIR 231 (237)
T ss_dssp ESHH-HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEE
T ss_pred CCch-HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEE
Confidence 9999 666666666666666667778999999999954 4555555555554
No 64
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.91 E-value=2.5e-24 Score=218.40 Aligned_cols=199 Identities=22% Similarity=0.235 Sum_probs=149.1
Q ss_pred CCCcccccccCCC-CccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhc-----
Q 048746 100 GENLDELHSELPD-KSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAG----- 171 (755)
Q Consensus 100 g~~~~~~~~~f~~-~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~----- 171 (755)
+...|.+..+|.+ +++++.+++.+.+.++..| +++|.++++.+.++++++++|||||||| +++|.+.....
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKP-TPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSC-CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCC-CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 4556778888988 6899999999999999888 9999999999999999999999999999 45554432211
Q ss_pred -ccCCCccccCccHHHHHHHHHHHHHHHh--CCccccEEeeeeeccc--cCCCCceEEEeCcHHHHHHHhCCC-CCCCCC
Q 048746 172 -YTKQGKVGCTQPRRVAAMSVAARVSQEM--GVKLGHEVGYSIRFED--CTSEKTILKYMTDGMLLREILSEP-NLESYS 245 (755)
Q Consensus 172 -~~~~~~ilv~~P~r~la~q~a~~~~~~~--~~~~g~~vg~~~~~~~--~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~ 245 (755)
...+++++|++|||+|+.|+++++.+.. +..+....|....... ....+.+|+|+||++|.+.+.... .+.+++
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 1245689999999999999999998853 2222222221111110 112457999999999999887654 688999
Q ss_pred ceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCCH--HHHHhhhCCCCEE
Q 048746 246 VLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLDA--EKFSDYFGSAPIF 300 (755)
Q Consensus 246 ~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~--~~l~~~~~~~~~~ 300 (755)
+||||||| +..+.++...+...+...+++.|+++||||++. ..+...+...|++
T Consensus 170 ~lViDEah-~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~ 225 (228)
T 3iuy_A 170 YLVIDEAD-KMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMI 225 (228)
T ss_dssp EEEECCHH-HHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEE
T ss_pred EEEEECHH-HHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEE
Confidence 99999999 777777777777777778889999999999954 4555555555543
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.91 E-value=6.8e-24 Score=214.49 Aligned_cols=196 Identities=16% Similarity=0.176 Sum_probs=143.1
Q ss_pred CcccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHh--cccCCCccc
Q 048746 102 NLDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEA--GYTKQGKVG 179 (755)
Q Consensus 102 ~~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~--~~~~~~~il 179 (755)
..+.++.+|.++++++.+++.+.+.++..| +++|.++++.+.+++++++++|||||||......++.. ....+.+++
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~l 86 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEP-SAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQAL 86 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSC-CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEE
T ss_pred ccCcccCChhhcCCCHHHHHHHHHCCCCCC-cHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEE
Confidence 345567789999999999999999988877 99999999999999999999999999995433333322 122345899
Q ss_pred cCccHHHHHHHHHHHHHHHh---CCccccEEeeeeeccc-cCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccc
Q 048746 180 CTQPRRVAAMSVAARVSQEM---GVKLGHEVGYSIRFED-CTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHE 254 (755)
Q Consensus 180 v~~P~r~la~q~a~~~~~~~---~~~~g~~vg~~~~~~~-~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHe 254 (755)
|++|+|+|+.|+++.+.+.. +..++...|.....+. .....++|+|+||+.|.+.+.... .+.++++|||||||
T Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah- 165 (224)
T 1qde_A 87 MLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD- 165 (224)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-
T ss_pred EEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh-
Confidence 99999999999999887743 2333333332211111 111348999999999999886644 67889999999999
Q ss_pred cCCccchHHHHHHHHHhcCCCcEEEEeccCCCH--HHHHhhhCCCCE
Q 048746 255 RTLSTDILFGLLKDLIKFRSDLKLLISSATLDA--EKFSDYFGSAPI 299 (755)
Q Consensus 255 r~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~--~~l~~~~~~~~~ 299 (755)
+....++...+...+...+++.++++||||++. ..+.+.+...|+
T Consensus 166 ~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~ 212 (224)
T 1qde_A 166 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPV 212 (224)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCE
T ss_pred HHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCE
Confidence 666666666666666667788999999999954 344444444444
No 66
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.91 E-value=5e-24 Score=214.77 Aligned_cols=193 Identities=17% Similarity=0.175 Sum_probs=140.9
Q ss_pred cccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcc--cCCCccccCccH
Q 048746 107 HSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGY--TKQGKVGCTQPR 184 (755)
Q Consensus 107 ~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~ilv~~P~ 184 (755)
..+|.++++++.+++.+.+.++..| +++|.++++.+.+++++++++|||||||......++.... ..+.+++|++||
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 81 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKP-TEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPT 81 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSC-CHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCc
Confidence 3568889999999999999988888 9999999999999999999999999999543333333222 234589999999
Q ss_pred HHHHHHHHHHHHHHhC-------CccccEEeeeeecc--ccCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccc
Q 048746 185 RVAAMSVAARVSQEMG-------VKLGHEVGYSIRFE--DCTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHE 254 (755)
Q Consensus 185 r~la~q~a~~~~~~~~-------~~~g~~vg~~~~~~--~~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHe 254 (755)
|+|+.|+++.+.+... ..++...|...... .....+.+|+|+||++|.+.+.... .+.++++|||||||
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah- 160 (219)
T 1q0u_A 82 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEAD- 160 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHH-
T ss_pred HHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCch-
Confidence 9999999998887553 22222222111100 1112367899999999999887654 67899999999999
Q ss_pred cCCccchHHHHHHHHHhcCCCcEEEEeccCCCH--HHHHhhhCCCCEEE
Q 048746 255 RTLSTDILFGLLKDLIKFRSDLKLLISSATLDA--EKFSDYFGSAPIFK 301 (755)
Q Consensus 255 r~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~--~~l~~~~~~~~~~~ 301 (755)
+..+.++...+...+...+++.++++||||++. ..+.+.+...|...
T Consensus 161 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~ 209 (219)
T 1q0u_A 161 LMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFV 209 (219)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEE
T ss_pred HHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEE
Confidence 666556665555555556678999999999943 44555555556543
No 67
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.1e-23 Score=216.03 Aligned_cols=202 Identities=18% Similarity=0.183 Sum_probs=149.2
Q ss_pred cCCCCcccccccCCCC----ccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhc--cHHHHHHHhc
Q 048746 98 IDGENLDELHSELPDK----SKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTT--QIPQYLHEAG 171 (755)
Q Consensus 98 ~~g~~~~~~~~~f~~~----~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~--~ip~~l~~~~ 171 (755)
+.|...+.++.+|.++ ++++.+++.+.+.++..| +++|.++++.+.++++++++||||||||. ++|.+.....
T Consensus 15 ~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 93 (245)
T 3dkp_A 15 VQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMP-TPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ 93 (245)
T ss_dssp EESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSC-CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS
T ss_pred ecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh
Confidence 4577788888888876 789999999999988888 99999999999999999999999999994 4444332221
Q ss_pred -ccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeee-------eccccCCCCceEEEeCcHHHHHHHhCC---CC
Q 048746 172 -YTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSI-------RFEDCTSEKTILKYMTDGMLLREILSE---PN 240 (755)
Q Consensus 172 -~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~-------~~~~~~~~~~~I~v~T~g~Ll~~l~~~---~~ 240 (755)
...+.+++|++|||+|+.|+++++.+.. ...+..++... ........+.+|+|+||++|.+.+... ..
T Consensus 94 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~ 172 (245)
T 3dkp_A 94 PANKGFRALIISPTRELASQIHRELIKIS-EGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGID 172 (245)
T ss_dssp CCSSSCCEEEECSSHHHHHHHHHHHHHHT-TTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCC
T ss_pred cccCCceEEEEeCCHHHHHHHHHHHHHHh-cccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcc
Confidence 1234589999999999999999988753 22232222111 112223456799999999999999765 36
Q ss_pred CCCCCceEeecccccCCc---cchHHHHHHHHHhc-CCCcEEEEeccCCC--HHHHHhhhCCCCEEEe
Q 048746 241 LESYSVLMVDEAHERTLS---TDILFGLLKDLIKF-RSDLKLLISSATLD--AEKFSDYFGSAPIFKI 302 (755)
Q Consensus 241 l~~~~~vIiDEaHer~~~---~d~~~~~l~~~~~~-~~~~~~il~SAT~~--~~~l~~~~~~~~~~~~ 302 (755)
+.++++||||||| +..+ .++...+...+... .++.++++||||++ ...+.+.+...|+...
T Consensus 173 ~~~~~~lViDEah-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~ 239 (245)
T 3dkp_A 173 LASVEWLVVDESD-KLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVS 239 (245)
T ss_dssp CTTCCEEEESSHH-HHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEE
T ss_pred cccCcEEEEeChH-HhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEE
Confidence 8899999999999 5544 45666666665553 45789999999994 4466665555665443
No 68
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.90 E-value=5.8e-24 Score=218.62 Aligned_cols=195 Identities=22% Similarity=0.170 Sum_probs=146.9
Q ss_pred ccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHh--cccCCCccccC
Q 048746 104 DELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEA--GYTKQGKVGCT 181 (755)
Q Consensus 104 ~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~--~~~~~~~ilv~ 181 (755)
+.+..+|.++++++.+++.+.+.++..| +++|.++++.+.++++++++||||||||......++.. ....+.+++|+
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil 117 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKP-TKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVL 117 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSC-CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEE
Confidence 3456789999999999999999988887 99999999999999999999999999995444333322 11234589999
Q ss_pred ccHHHHHHHHHHHHHHHh---CCccccEEeeeeecc--ccCCCCceEEEeCcHHHHHHHhCC--CCCCCCCceEeecccc
Q 048746 182 QPRRVAAMSVAARVSQEM---GVKLGHEVGYSIRFE--DCTSEKTILKYMTDGMLLREILSE--PNLESYSVLMVDEAHE 254 (755)
Q Consensus 182 ~P~r~la~q~a~~~~~~~---~~~~g~~vg~~~~~~--~~~~~~~~I~v~T~g~Ll~~l~~~--~~l~~~~~vIiDEaHe 254 (755)
+|||+|+.|+++++.+.. +..++..+|...... .....+++|+|+||++|++.+... ..+.++++|||||||
T Consensus 118 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah- 196 (249)
T 3ber_A 118 TPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD- 196 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH-
T ss_pred eCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh-
Confidence 999999999998887743 333333333111100 111246799999999999988653 368899999999999
Q ss_pred cCCccchHHHHHHHHHhcCCCcEEEEeccCCCH--HHHHhhhCCCCEE
Q 048746 255 RTLSTDILFGLLKDLIKFRSDLKLLISSATLDA--EKFSDYFGSAPIF 300 (755)
Q Consensus 255 r~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~--~~l~~~~~~~~~~ 300 (755)
+..+.++...+.+.+...+++.++++||||++. ..+.+.+...|+.
T Consensus 197 ~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~ 244 (249)
T 3ber_A 197 RILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVK 244 (249)
T ss_dssp HHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEE
T ss_pred hhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEE
Confidence 777777877777766667778999999999954 4566666556654
No 69
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.90 E-value=5e-23 Score=239.69 Aligned_cols=168 Identities=16% Similarity=0.134 Sum_probs=124.1
Q ss_pred CcEEEEeccCCCHHHHHhhhCCCCEEEecCc----cccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHH
Q 048746 275 DLKLLISSATLDAEKFSDYFGSAPIFKIPGR----RYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEE 350 (755)
Q Consensus 275 ~~~~il~SAT~~~~~l~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~ 350 (755)
..+++++|||+....+.. ...++....+ ..|. +... +........+..+.... ..+.++||||+|+..
T Consensus 380 ~~q~i~~SAT~~~~~~~~---~~~~~~~~~r~~~l~~p~-i~v~--~~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH---SGRVVEQIIRPTGLLDPL-VRVK--PTENQILDLMEGIRERA--ARGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHH---CSEEEEECSCTTCCCCCE-EEEE--CSTTHHHHHHHHHHHHH--HTTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHh---hhCeeeeeeccCCCCCCe-EEEe--cccchHHHHHHHHHHHH--hcCCEEEEEECCHHH
Confidence 578999999996544332 1112222222 1222 1111 12223333333333322 236799999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccc
Q 048746 351 IETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSY 430 (755)
Q Consensus 351 ~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~ 430 (755)
++.+++.|.+.+ +.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|+|++||+++..+.
T Consensus 452 ae~L~~~L~~~g---------i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~--- 519 (664)
T 1c4o_A 452 AEELTSFLVEHG---------IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKE--- 519 (664)
T ss_dssp HHHHHHHHHHTT---------CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSC---
T ss_pred HHHHHHHHHhcC---------CCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCccc---
Confidence 999999999853 67788999999999999999999999999999999999999999999999986222
Q ss_pred cCCCCcccccccccCHHhHHhhhcccCCCCCCEEEEeccCcc
Q 048746 431 NPRTGMESLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHN 472 (755)
Q Consensus 431 ~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~ 472 (755)
| .|.|..+|+||+|||||.++|.|+.++++.+
T Consensus 520 ----G------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~ 551 (664)
T 1c4o_A 520 ----G------FLRSERSLIQTIGRAARNARGEVWLYADRVS 551 (664)
T ss_dssp ----S------GGGSHHHHHHHHGGGTTSTTCEEEEECSSCC
T ss_pred ----C------CCCCHHHHHHHHCccCcCCCCEEEEEEcCCC
Confidence 1 1789999999999999999999999998653
No 70
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.90 E-value=2e-23 Score=208.12 Aligned_cols=190 Identities=19% Similarity=0.173 Sum_probs=139.7
Q ss_pred ccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHh--cccCCCccccCccHH
Q 048746 108 SELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEA--GYTKQGKVGCTQPRR 185 (755)
Q Consensus 108 ~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~--~~~~~~~ilv~~P~r 185 (755)
.+|+++++++.+++.+.+.++..| +++|.++++.+.++++++++||||||||......+... ....+.+++|++|++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKP-SPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSC-CHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcH
Confidence 368888999999999999988888 99999999999999999999999999994333333322 122345899999999
Q ss_pred HHHHHHHHHHHHHhCCccccEEeeeeeccc------cCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEeecccccCCc
Q 048746 186 VAAMSVAARVSQEMGVKLGHEVGYSIRFED------CTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVDEAHERTLS 258 (755)
Q Consensus 186 ~la~q~a~~~~~~~~~~~g~~vg~~~~~~~------~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiDEaHer~~~ 258 (755)
+|+.|+++.+.+......+..++...+... ......+|+|+||+.|.+.+.... .+.++++||+|||| +..+
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah-~~~~ 160 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD-KLLS 160 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHH-HHTS
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChH-HhHh
Confidence 999999999887543221222222111111 123467899999999999887654 68899999999999 6666
Q ss_pred cchHHHHHHHHHhcCCCcEEEEeccCCCH--HHHHhhhCCCCE
Q 048746 259 TDILFGLLKDLIKFRSDLKLLISSATLDA--EKFSDYFGSAPI 299 (755)
Q Consensus 259 ~d~~~~~l~~~~~~~~~~~~il~SAT~~~--~~l~~~~~~~~~ 299 (755)
.++...+...+...+++.++++||||++. ..+.+.+...|+
T Consensus 161 ~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~ 203 (206)
T 1vec_A 161 QDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPY 203 (206)
T ss_dssp TTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred hCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCe
Confidence 66666555555556668999999999954 344444444554
No 71
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.90 E-value=2e-23 Score=212.02 Aligned_cols=188 Identities=16% Similarity=0.094 Sum_probs=133.6
Q ss_pred CCCCcccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhc--ccCCC
Q 048746 99 DGENLDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAG--YTKQG 176 (755)
Q Consensus 99 ~g~~~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~--~~~~~ 176 (755)
+++..+.+..+|+++++++.+++.+.+.++..| +++|.++++.+.+++++++++|||||||......+.... ...+.
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~ 93 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERP-SPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLST 93 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSC-CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSC
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCc
Confidence 355556667789999999999999999888878 999999999999999999999999999944332222221 22346
Q ss_pred ccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeecc-----ccCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEee
Q 048746 177 KVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFE-----DCTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVD 250 (755)
Q Consensus 177 ~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~-----~~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiD 250 (755)
+++|++|||+|+.|+++++.+......+..++...+.. .....+.+|+|+||++|.+.+.... .+.++++||||
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViD 173 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILD 173 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEES
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeC
Confidence 89999999999999999998754221122232211111 1112467999999999999886554 67889999999
Q ss_pred cccccCCccc-hHHHHHHHHHhcCCCcEEEEeccCCCHH
Q 048746 251 EAHERTLSTD-ILFGLLKDLIKFRSDLKLLISSATLDAE 288 (755)
Q Consensus 251 EaHer~~~~d-~~~~~l~~~~~~~~~~~~il~SAT~~~~ 288 (755)
||| +..+.+ +...+...+...+++.|+++||||++.+
T Consensus 174 Eah-~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~ 211 (230)
T 2oxc_A 174 EAD-KLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEF 211 (230)
T ss_dssp SHH-HHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHH
T ss_pred Cch-HhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHH
Confidence 999 665554 5555444444566689999999999644
No 72
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.90 E-value=3.7e-23 Score=210.85 Aligned_cols=194 Identities=20% Similarity=0.150 Sum_probs=143.8
Q ss_pred ccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhc--cHHHHHH--Hhc--ccCCCc
Q 048746 104 DELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTT--QIPQYLH--EAG--YTKQGK 177 (755)
Q Consensus 104 ~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~--~ip~~l~--~~~--~~~~~~ 177 (755)
+.+..+|.++++++.+++.+.+.++..| +++|.++++.+.++++++++||||||||+ ++|.+.. ... ...+.+
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~-~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 99 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLV-TEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLG 99 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBC-CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCce
Confidence 3456689999999999999999888888 99999999999999999999999999994 3443321 111 123568
Q ss_pred cccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccc-----cCCCCceEEEeCcHHHHHHHhCC--CCCCCCCceEee
Q 048746 178 VGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED-----CTSEKTILKYMTDGMLLREILSE--PNLESYSVLMVD 250 (755)
Q Consensus 178 ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~-----~~~~~~~I~v~T~g~Ll~~l~~~--~~l~~~~~vIiD 250 (755)
++|++|||+|+.|+++.+.+. +...+..++...+... ....+++|+|+||++|++.+... ..+.++++||||
T Consensus 100 ~lil~Pt~~L~~q~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViD 178 (236)
T 2pl3_A 100 VLIISPTRELAYQTFEVLRKV-GKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLD 178 (236)
T ss_dssp EEEECSSHHHHHHHHHHHHHH-TTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEET
T ss_pred EEEEeCCHHHHHHHHHHHHHH-hCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEe
Confidence 999999999999999988774 3332323332111111 11246799999999999988654 467899999999
Q ss_pred cccccCCccchHHHHHHHHHhcCCCcEEEEeccCCCH--HHHHhhhCCCCEE
Q 048746 251 EAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLDA--EKFSDYFGSAPIF 300 (755)
Q Consensus 251 EaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~~--~~l~~~~~~~~~~ 300 (755)
||| +..+.++...+...+...+++.++++||||++. ..+.+.+...|.+
T Consensus 179 Eah-~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~ 229 (236)
T 2pl3_A 179 EAD-RILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEY 229 (236)
T ss_dssp THH-HHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEE
T ss_pred ChH-HHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEE
Confidence 999 777767766666666666778999999999954 4666665555543
No 73
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.89 E-value=7.9e-23 Score=206.08 Aligned_cols=197 Identities=15% Similarity=0.059 Sum_probs=137.7
Q ss_pred CCcccccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhccc--CCCcc
Q 048746 101 ENLDELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYT--KQGKV 178 (755)
Q Consensus 101 ~~~~~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~i 178 (755)
...+....+|+++++++.+++.+.+.++..| +++|.++++.+.+++++++++|||||||......+...... .+.++
T Consensus 7 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~ 85 (220)
T 1t6n_A 7 SYVSIHSSGFRDFLLKPELLRAIVDCGFEHP-SEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSV 85 (220)
T ss_dssp -------CCSTTSCCCHHHHHHHHHTTCCCC-CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCE
T ss_pred CcccccCCCHhhcCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEE
Confidence 3334445679999999999999999888878 99999999999999999999999999995444333333222 23489
Q ss_pred ccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccc-------cCCCCceEEEeCcHHHHHHHhCCC-CCCCCCceEee
Q 048746 179 GCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED-------CTSEKTILKYMTDGMLLREILSEP-NLESYSVLMVD 250 (755)
Q Consensus 179 lv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~-------~~~~~~~I~v~T~g~Ll~~l~~~~-~l~~~~~vIiD 250 (755)
+|++|+++|+.|+++.+.+......+..++...+... ......+|+|+||+.|.+.+.... .+.++++||||
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 165 (220)
T 1t6n_A 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD 165 (220)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEc
Confidence 9999999999999998887542211222221111111 011346899999999999887654 68899999999
Q ss_pred cccccCCc-cchHHHHHHHHHhcCCCcEEEEeccCCC--HHHHHhhhCCCCE
Q 048746 251 EAHERTLS-TDILFGLLKDLIKFRSDLKLLISSATLD--AEKFSDYFGSAPI 299 (755)
Q Consensus 251 EaHer~~~-~d~~~~~l~~~~~~~~~~~~il~SAT~~--~~~l~~~~~~~~~ 299 (755)
||| +... .++...+...+....++.++++||||++ .+.+.+.+...|+
T Consensus 166 Eah-~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~ 216 (220)
T 1t6n_A 166 ECD-KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPM 216 (220)
T ss_dssp SHH-HHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCE
T ss_pred CHH-HHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCe
Confidence 999 5544 3454444444444566899999999993 4556655544554
No 74
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.89 E-value=2e-22 Score=234.91 Aligned_cols=310 Identities=15% Similarity=0.130 Sum_probs=199.7
Q ss_pred CChHHHHHHHHHHH---------cCCeEEEEccCCCchhccHHHHHHHh---ccc---CCCccccCccHHHHHHHHHHHH
Q 048746 131 PIYPYRDELLQAVN---------EYQVLVIVGETGSGKTTQIPQYLHEA---GYT---KQGKVGCTQPRRVAAMSVAARV 195 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~---------~~~~vii~apTGsGKT~~ip~~l~~~---~~~---~~~~ilv~~P~r~la~q~a~~~ 195 (755)
.++++|.+.+..+. .+...|+..+||+|||.++..++... ... ...++||++|+ .|+.|..+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 46899999999863 45679999999999996655444332 111 12368999997 7888898888
Q ss_pred HHHhCCccccEEee-eeecc-----------ccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHH
Q 048746 196 SQEMGVKLGHEVGY-SIRFE-----------DCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILF 263 (755)
Q Consensus 196 ~~~~~~~~g~~vg~-~~~~~-----------~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~ 263 (755)
.+.++..+.....+ ....+ .......+|+++|++.+..... ...-.++++||+|||| +.-+....
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~-~l~~~~~~~vI~DEaH-~ikn~~~~- 210 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE-VLHKGKVGLVICDEGH-RLKNSDNQ- 210 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT-TTTTSCCCEEEETTGG-GCCTTCHH-
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH-HhhcCCccEEEEECce-ecCChhhH-
Confidence 88765322111111 00000 0011246899999999876531 1123578999999999 55444322
Q ss_pred HHHHHHHhcCCCcEEEEeccCCCHH---------------------HHHhhhCC---------C----------------
Q 048746 264 GLLKDLIKFRSDLKLLISSATLDAE---------------------KFSDYFGS---------A---------------- 297 (755)
Q Consensus 264 ~~l~~~~~~~~~~~~il~SAT~~~~---------------------~l~~~~~~---------~---------------- 297 (755)
..+.+... ...+.+++|||+-.. .|.+.|.. .
T Consensus 211 -~~~al~~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 288 (644)
T 1z3i_X 211 -TYLALNSM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELI 288 (644)
T ss_dssp -HHHHHHHH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHH
T ss_pred -HHHHHHhc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHH
Confidence 11222222 345789999998211 11111110 0
Q ss_pred ----CEE-Eec----CccccceEE---EecCCcc----------------------------------------------
Q 048746 298 ----PIF-KIP----GRRYPVEIH---YTKAPEA---------------------------------------------- 319 (755)
Q Consensus 298 ----~~~-~~~----~~~~~v~~~---~~~~~~~---------------------------------------------- 319 (755)
|.+ .-. ....|.... +......
T Consensus 289 ~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~ 368 (644)
T 1z3i_X 289 SIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYE 368 (644)
T ss_dssp HHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHH
Confidence 000 000 000111111 1110000
Q ss_pred -----------------------------chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCC
Q 048746 320 -----------------------------DYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIA 370 (755)
Q Consensus 320 -----------------------------~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~ 370 (755)
...-..+..++.......+.++|||++....++.+...|...+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g-------- 440 (644)
T 1z3i_X 369 KCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRR-------- 440 (644)
T ss_dssp HHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHT--------
T ss_pred HHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCC--------
Confidence 0000111222222223346799999999999999999998754
Q ss_pred ceEEEeccCCCCHHHHHHHhCCCCCCCc---EEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHH
Q 048746 371 ELIICPIYANLPTELQAKIFEPTPEGAR---KVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKA 447 (755)
Q Consensus 371 ~~~v~~lh~~l~~~~r~~i~~~f~~g~~---~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~ 447 (755)
+.+..+||+++.++|.++++.|++|.. .+|++|.++++|||++++++||+++. |.+++
T Consensus 441 -~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~------------------~wnp~ 501 (644)
T 1z3i_X 441 -YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDP------------------DWNPA 501 (644)
T ss_dssp -CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSC------------------CSSHH
T ss_pred -CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECC------------------CCCcc
Confidence 678889999999999999999998865 48999999999999999999999999 99999
Q ss_pred hHHhhhcccCCCCC---CEEEEeccCccc
Q 048746 448 SAMQRAGRSGRTGP---GKCFRLYTLHNY 473 (755)
Q Consensus 448 ~~~QR~GRaGR~g~---G~~~~l~~~~~~ 473 (755)
.+.|++||++|.|. ..+|+|++....
T Consensus 502 ~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ti 530 (644)
T 1z3i_X 502 NDEQAMARVWRDGQKKTCYIYRLLSTGTI 530 (644)
T ss_dssp HHHHHHTTSSSTTCCSCEEEEEEEETTSH
T ss_pred HHHHHHHhhhhcCCCCceEEEEEEECCCH
Confidence 99999999999994 568888886544
No 75
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.89 E-value=8e-23 Score=203.80 Aligned_cols=190 Identities=22% Similarity=0.175 Sum_probs=140.4
Q ss_pred cCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcc-----cCCCccccCcc
Q 048746 109 ELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGY-----TKQGKVGCTQP 183 (755)
Q Consensus 109 ~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~-----~~~~~ilv~~P 183 (755)
+|.++++++.+++.+.+.++..| +++|.++++.+.+++++++++|||||||......+..... ..+++++|++|
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~-~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P 80 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTP-TPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTP 80 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSC-CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEEC
Confidence 57888999999999999888888 9999999999999999999999999999554433333322 23468999999
Q ss_pred HHHHHHHHHHHHHHHhCC-ccccEEeeeeecc--ccCCCCceEEEeCcHHHHHHHhCC-CCCCCCCceEeecccccCCcc
Q 048746 184 RRVAAMSVAARVSQEMGV-KLGHEVGYSIRFE--DCTSEKTILKYMTDGMLLREILSE-PNLESYSVLMVDEAHERTLST 259 (755)
Q Consensus 184 ~r~la~q~a~~~~~~~~~-~~g~~vg~~~~~~--~~~~~~~~I~v~T~g~Ll~~l~~~-~~l~~~~~vIiDEaHer~~~~ 259 (755)
+|+|+.|+++++.+..+. .+....|...... .....+++|+|+||+.+.+.+... ..+.++++||+|||| +..+.
T Consensus 81 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~ 159 (207)
T 2gxq_A 81 TRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD-EMLSM 159 (207)
T ss_dssp SHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHH-HHHHT
T ss_pred CHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChh-Hhhcc
Confidence 999999999999886532 2222222110000 001135789999999999988654 368899999999999 66565
Q ss_pred chHHHHHHHHHhcCCCcEEEEeccCCCH--HHHHhhhCCCCEE
Q 048746 260 DILFGLLKDLIKFRSDLKLLISSATLDA--EKFSDYFGSAPIF 300 (755)
Q Consensus 260 d~~~~~l~~~~~~~~~~~~il~SAT~~~--~~l~~~~~~~~~~ 300 (755)
++...+...+...+++.++++||||++. +.+.+.+...|++
T Consensus 160 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~ 202 (207)
T 2gxq_A 160 GFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVL 202 (207)
T ss_dssp TCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEE
T ss_pred chHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeE
Confidence 6655555555556678999999999954 4666666556654
No 76
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.88 E-value=5.1e-23 Score=213.23 Aligned_cols=184 Identities=20% Similarity=0.166 Sum_probs=135.5
Q ss_pred cCCCCc--cchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHh--c--ccCCCcccc
Q 048746 109 ELPDKS--KEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEA--G--YTKQGKVGC 180 (755)
Q Consensus 109 ~f~~~~--~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~--~--~~~~~~ilv 180 (755)
+|.++. +++.+++.+.+.++..| +++|.++++.+..+++++++|||||||| +++|.+.... . ...+.+++|
T Consensus 53 ~f~~l~~~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li 131 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKEMGFTNM-TEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI 131 (262)
T ss_dssp CC-----CCCHHHHHHHHHTTCCBC-CHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred ChhHhccccCHHHHHHHHHCCCCCC-CHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence 455555 78999999999988888 9999999999999999999999999999 4455432211 1 123568999
Q ss_pred CccHHHHHHHHHHHHHHHhCCccccEEeeeeecccc------CCCCceEEEeCcHHHHHHHhCCC--CCCCCCceEeecc
Q 048746 181 TQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDC------TSEKTILKYMTDGMLLREILSEP--NLESYSVLMVDEA 252 (755)
Q Consensus 181 ~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~------~~~~~~I~v~T~g~Ll~~l~~~~--~l~~~~~vIiDEa 252 (755)
++|||+||.|+++.+.+.. ...+..++...+.... ...+++|+|+|||++++.+.... .+.++++||||||
T Consensus 132 l~Pt~~La~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELM-THHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHT-TTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EeCCHHHHHHHHHHHHHHH-hhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 9999999999999988844 3333333322221111 11347899999999999887654 6889999999999
Q ss_pred cccCCccchHHHHHHHHHhcCCCcEEEEeccCCC--HHHHHhhhC
Q 048746 253 HERTLSTDILFGLLKDLIKFRSDLKLLISSATLD--AEKFSDYFG 295 (755)
Q Consensus 253 Her~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~--~~~l~~~~~ 295 (755)
| +..+.++...+...+...+++.|+++||||++ ...+.+.+.
T Consensus 211 h-~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l 254 (262)
T 3ly5_A 211 D-RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISL 254 (262)
T ss_dssp H-HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHC
T ss_pred H-HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHc
Confidence 9 77777777776666666777899999999995 445665443
No 77
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.88 E-value=3.6e-23 Score=213.36 Aligned_cols=201 Identities=21% Similarity=0.173 Sum_probs=144.6
Q ss_pred cCCCCccc--ccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHh--c
Q 048746 98 IDGENLDE--LHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEA--G 171 (755)
Q Consensus 98 ~~g~~~~~--~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~--~ 171 (755)
++|...+. ++.+|.++++++.+++.+.+.++..| +++|.++++.+.++++++++|||||||| +++|.+.... .
T Consensus 11 ~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~ 89 (253)
T 1wrb_A 11 VTGPDYSATNVIENFDELKLDPTIRNNILLASYQRP-TPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQD 89 (253)
T ss_dssp EECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSC-CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred eeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhc
Confidence 34666555 77889999999999999998888888 9999999999999999999999999999 3444432211 1
Q ss_pred -------ccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccc------cCCCCceEEEeCcHHHHHHHhCC
Q 048746 172 -------YTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED------CTSEKTILKYMTDGMLLREILSE 238 (755)
Q Consensus 172 -------~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~------~~~~~~~I~v~T~g~Ll~~l~~~ 238 (755)
...+++++|++|||+|+.|+++++.+... ..+..++....... ....+++|+|+||++|.+.+...
T Consensus 90 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 168 (253)
T 1wrb_A 90 LNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSL-NTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN 168 (253)
T ss_dssp C------CCBCCSEEEECSSHHHHHHHHHHHHHHHT-TSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT
T ss_pred cccccccccCCceEEEEECCHHHHHHHHHHHHHHhc-cCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC
Confidence 11235899999999999999998877542 22222221111111 11246799999999999998765
Q ss_pred C-CCCCCCceEeecccccCCccchHHHHHHHHHh--cCC--CcEEEEeccCCCH--HHHHhhhCCCCEEE
Q 048746 239 P-NLESYSVLMVDEAHERTLSTDILFGLLKDLIK--FRS--DLKLLISSATLDA--EKFSDYFGSAPIFK 301 (755)
Q Consensus 239 ~-~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~--~~~--~~~~il~SAT~~~--~~l~~~~~~~~~~~ 301 (755)
. .+.++++||||||| +.++.++...+...+.. ... +.|+++||||++. ..+.+.+...|+..
T Consensus 169 ~~~~~~~~~lViDEah-~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i 237 (253)
T 1wrb_A 169 KISLEFCKYIVLDEAD-RMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFM 237 (253)
T ss_dssp SBCCTTCCEEEEETHH-HHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEE
T ss_pred CCChhhCCEEEEeCHH-HHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEE
Confidence 4 68899999999999 66666665555554442 222 6899999999954 46666555555543
No 78
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.7e-22 Score=241.24 Aligned_cols=312 Identities=13% Similarity=0.131 Sum_probs=200.7
Q ss_pred CCChHHHHHHHHHHH----cCCeEEEEccCCCchhccHHHHHHHh--cccCCCccccCccHHHHHHHHHHHHHHHh-CCc
Q 048746 130 LPIYPYRDELLQAVN----EYQVLVIVGETGSGKTTQIPQYLHEA--GYTKQGKVGCTQPRRVAAMSVAARVSQEM-GVK 202 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~----~~~~vii~apTGsGKT~~ip~~l~~~--~~~~~~~ilv~~P~r~la~q~a~~~~~~~-~~~ 202 (755)
..++++|.+++..+. .++..|++.+||+|||.++..++... .....+.+||++| ..++.|..+.+.+.. +..
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 457899999998654 78899999999999996554443322 1223457899999 677888888888765 233
Q ss_pred cccEEeeeeec--------------cccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHH
Q 048746 203 LGHEVGYSIRF--------------EDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKD 268 (755)
Q Consensus 203 ~g~~vg~~~~~--------------~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~ 268 (755)
+....|..... ........+|+++|++++.+....- .-.++++||||||| +.-+.... ..+.
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l-~~~~w~~vIvDEaH-~lkn~~s~--~~~~ 389 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL-GSIKWQFMAVDEAH-RLKNAESS--LYES 389 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHH-HTSEEEEEEETTGG-GGCCSSSH--HHHH
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHH-hcCCcceeehhhhh-hhcCchhH--HHHH
Confidence 32222211000 0012345789999999997643110 12257899999999 55333221 1222
Q ss_pred HHhcCCCcEEEEeccCC---CHHHH---HhhhCCCC-----------------------------EEEecC-----cccc
Q 048746 269 LIKFRSDLKLLISSATL---DAEKF---SDYFGSAP-----------------------------IFKIPG-----RRYP 308 (755)
Q Consensus 269 ~~~~~~~~~~il~SAT~---~~~~l---~~~~~~~~-----------------------------~~~~~~-----~~~~ 308 (755)
+... +....+++|||+ +...+ ..++.... .+.-.. ...|
T Consensus 390 l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP 468 (800)
T 3mwy_W 390 LNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLP 468 (800)
T ss_dssp HTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSC
T ss_pred HHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccC
Confidence 2222 345678899999 22222 22221110 000000 0011
Q ss_pred c---eEEEecCCccc---h------------------------------------------------------------H
Q 048746 309 V---EIHYTKAPEAD---Y------------------------------------------------------------I 322 (755)
Q Consensus 309 v---~~~~~~~~~~~---~------------------------------------------------------------~ 322 (755)
- .+.+....... | .
T Consensus 469 ~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~ 548 (800)
T 3mwy_W 469 SKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVL 548 (800)
T ss_dssp CEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHH
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHH
Confidence 0 11111110000 0 0
Q ss_pred ------HHHHHHHHHHHh--hCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCC
Q 048746 323 ------DAAIVTVLQIHV--TQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTP 394 (755)
Q Consensus 323 ------~~~~~~~~~~~~--~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~ 394 (755)
...+..+..+.. ...+.++|||+.....++.+...|...+ +.+..+||+++..+|..+++.|+
T Consensus 549 ~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g---------~~~~~i~G~~~~~eR~~~i~~F~ 619 (800)
T 3mwy_W 549 RGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKG---------INFQRLDGTVPSAQRRISIDHFN 619 (800)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHT---------CCCEEESTTSCHHHHHHHHHTTS
T ss_pred HHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCC---------CCEEEEeCCCCHHHHHHHHHHhh
Confidence 000111111111 2346799999999999999999998753 67888999999999999999998
Q ss_pred CCCc---EEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC---CCEEEEec
Q 048746 395 EGAR---KVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG---PGKCFRLY 468 (755)
Q Consensus 395 ~g~~---~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g---~G~~~~l~ 468 (755)
+|.. .+|++|.+++.|||++.+++||.++. |.++..+.||+||++|.| +..+|+|+
T Consensus 620 ~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~------------------~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv 681 (800)
T 3mwy_W 620 SPDSNDFVFLLSTRAGGLGINLMTADTVVIFDS------------------DWNPQADLQAMARAHRIGQKNHVMVYRLV 681 (800)
T ss_dssp STTCSCCCEEEEHHHHTTTCCCTTCCEEEESSC------------------CSCSHHHHHHHTTTSCSSCCSCEEEEEEE
T ss_pred CCCCCceEEEEecccccCCCCccccceEEEecC------------------CCChhhHHHHHHHHHhcCCCceEEEEEEe
Confidence 8554 58999999999999999999999999 999999999999999988 47789999
Q ss_pred cCcccc
Q 048746 469 TLHNYH 474 (755)
Q Consensus 469 ~~~~~~ 474 (755)
++...+
T Consensus 682 ~~~TiE 687 (800)
T 3mwy_W 682 SKDTVE 687 (800)
T ss_dssp ETTSHH
T ss_pred cCCCHH
Confidence 877554
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.86 E-value=1.7e-21 Score=186.57 Aligned_cols=136 Identities=21% Similarity=0.362 Sum_probs=117.6
Q ss_pred ccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHH
Q 048746 307 YPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQ 386 (755)
Q Consensus 307 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 386 (755)
..+.++|...+..++... +..+.....++++||||+++..++.+++.|... ++.+..+||+|++.+|
T Consensus 8 ~~i~~~~~~~~~~~K~~~----L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r 74 (163)
T 2hjv_A 8 RNIEHAVIQVREENKFSL----LKDVLMTENPDSCIIFCRTKEHVNQLTDELDDL---------GYPCDKIHGGMIQEDR 74 (163)
T ss_dssp CCEEEEEEECCGGGHHHH----HHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHH
T ss_pred ccceEEEEECChHHHHHH----HHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHH
Confidence 346777777776665553 333333345789999999999999999999874 3778999999999999
Q ss_pred HHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEE
Q 048746 387 AKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCF 465 (755)
Q Consensus 387 ~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~ 465 (755)
..+++.|++|..+|||||+++++|+|+|++++||++++ |.+..+|+||+||+||.| +|.|+
T Consensus 75 ~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~ 136 (163)
T 2hjv_A 75 FDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDL------------------PLEKESYVHRTGRTGRAGNKGKAI 136 (163)
T ss_dssp HHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSC------------------CSSHHHHHHHTTTSSCTTCCEEEE
T ss_pred HHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCC------------------CCCHHHHHHhccccCcCCCCceEE
Confidence 99999999999999999999999999999999999999 999999999999999998 69999
Q ss_pred EeccCccc
Q 048746 466 RLYTLHNY 473 (755)
Q Consensus 466 ~l~~~~~~ 473 (755)
.++++.+.
T Consensus 137 ~~~~~~~~ 144 (163)
T 2hjv_A 137 SFVTAFEK 144 (163)
T ss_dssp EEECGGGH
T ss_pred EEecHHHH
Confidence 99987653
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.5e-21 Score=187.80 Aligned_cols=136 Identities=17% Similarity=0.311 Sum_probs=113.4
Q ss_pred cceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHH
Q 048746 308 PVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQA 387 (755)
Q Consensus 308 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 387 (755)
.+.++|...+..+ .....+..+....+.+++||||+++..++.++..|... ++.+..+||+|++.+|.
T Consensus 7 ~i~q~~~~~~~~~---~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R~ 74 (175)
T 2rb4_A 7 NIRQYYVLCEHRK---DKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD---------GHQVSLLSGELTVEQRA 74 (175)
T ss_dssp CEEEEEEECSSHH---HHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECSSCCHHHHH
T ss_pred CceEEEEEcCChH---hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHH
Confidence 4677777766543 12334555555556789999999999999999999874 36789999999999999
Q ss_pred HHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccc------cCHHhHHhhhcccCCCC-
Q 048746 388 KIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHP------ISKASAMQRAGRSGRTG- 460 (755)
Q Consensus 388 ~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p------~s~~~~~QR~GRaGR~g- 460 (755)
.+++.|++|..+|||||+++++|+|+|++++||++|+ | .+..+|+||+|||||.|
T Consensus 75 ~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~------------------p~~~~~~~~~~~~~qr~GR~gR~g~ 136 (175)
T 2rb4_A 75 SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDL------------------PVKQGEEPDYETYLHRIGRTGRFGK 136 (175)
T ss_dssp HHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSC------------------CC--CCSCCHHHHHHHHCBC----C
T ss_pred HHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCC------------------CCCccccCCHHHHHHHhcccccCCC
Confidence 9999999999999999999999999999999999999 7 99999999999999998
Q ss_pred CCEEEEeccCccc
Q 048746 461 PGKCFRLYTLHNY 473 (755)
Q Consensus 461 ~G~~~~l~~~~~~ 473 (755)
+|.|+.|+++.+.
T Consensus 137 ~g~~~~~~~~~~~ 149 (175)
T 2rb4_A 137 KGLAFNMIEVDEL 149 (175)
T ss_dssp CEEEEEEECGGGH
T ss_pred CceEEEEEccchH
Confidence 5999999987653
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.85 E-value=2.4e-21 Score=187.20 Aligned_cols=133 Identities=14% Similarity=0.287 Sum_probs=116.8
Q ss_pred cceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHH
Q 048746 308 PVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQA 387 (755)
Q Consensus 308 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 387 (755)
.+.++|...+..+... .+..+....+.+++||||+++..++.+++.|... ++.+..+||+|++.+|.
T Consensus 5 ~i~q~~~~~~~~~K~~----~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~ 71 (172)
T 1t5i_A 5 GLQQYYVKLKDNEKNR----KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERL 71 (172)
T ss_dssp CCEEEEEECCGGGHHH----HHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHH
T ss_pred CeEEEEEECChHHHHH----HHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc---------CCCEEEEECCCCHHHHH
Confidence 4677777777665554 3444444456789999999999999999999884 36788999999999999
Q ss_pred HHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEE
Q 048746 388 KIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFR 466 (755)
Q Consensus 388 ~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~ 466 (755)
.+++.|++|..+|||||+++++|+|+|++++||++|+ |.+..+|+||+|||||.| +|.|+.
T Consensus 72 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~------------------p~~~~~~~qr~GR~~R~g~~g~~~~ 133 (172)
T 1t5i_A 72 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAIT 133 (172)
T ss_dssp HHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSC------------------CSSHHHHHHHHHHHTGGGCCCEEEE
T ss_pred HHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECC------------------CCCHHHHHHHhcccccCCCCcEEEE
Confidence 9999999999999999999999999999999999999 999999999999999998 599999
Q ss_pred eccCc
Q 048746 467 LYTLH 471 (755)
Q Consensus 467 l~~~~ 471 (755)
|+++.
T Consensus 134 ~~~~~ 138 (172)
T 1t5i_A 134 FVSDE 138 (172)
T ss_dssp EECSH
T ss_pred EEcCh
Confidence 99865
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.84 E-value=2.3e-21 Score=186.08 Aligned_cols=135 Identities=19% Similarity=0.428 Sum_probs=111.5
Q ss_pred ceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHH
Q 048746 309 VEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAK 388 (755)
Q Consensus 309 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 388 (755)
++++|...+..++... .+..+....+.+++||||++++.++.++..|... ++.+..+||+|++.+|..
T Consensus 4 i~~~~~~~~~~~~K~~---~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~ 71 (165)
T 1fuk_A 4 IKQFYVNVEEEEYKYE---CLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDT 71 (165)
T ss_dssp CEEEEEEEESGGGHHH---HHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHH
T ss_pred cEEEEEECCcchhHHH---HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHH
Confidence 5566666555552222 3333334446789999999999999999999874 367889999999999999
Q ss_pred HhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEe
Q 048746 389 IFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRL 467 (755)
Q Consensus 389 i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l 467 (755)
+++.|++|..+|||||+++++|+|+|++++||++|+ |.+..+|.||+|||||.| +|.|+.+
T Consensus 72 ~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~~ 133 (165)
T 1fuk_A 72 IMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFGRKGVAINF 133 (165)
T ss_dssp HHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSC------------------CSSGGGGGGSSCSCC-----CEEEEE
T ss_pred HHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEE
Confidence 999999999999999999999999999999999999 999999999999999998 5999999
Q ss_pred ccCccc
Q 048746 468 YTLHNY 473 (755)
Q Consensus 468 ~~~~~~ 473 (755)
+++.+.
T Consensus 134 ~~~~~~ 139 (165)
T 1fuk_A 134 VTNEDV 139 (165)
T ss_dssp EETTTH
T ss_pred EcchHH
Confidence 997654
No 83
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.84 E-value=1e-20 Score=220.13 Aligned_cols=210 Identities=20% Similarity=0.187 Sum_probs=145.5
Q ss_pred eCcHHHHHHHhCCCCCCCCCceEeecccccCCcc--chHHHHHH---HHHh-------------------cCCCcEEEEe
Q 048746 226 MTDGMLLREILSEPNLESYSVLMVDEAHERTLST--DILFGLLK---DLIK-------------------FRSDLKLLIS 281 (755)
Q Consensus 226 ~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~--d~~~~~l~---~~~~-------------------~~~~~~~il~ 281 (755)
+|||+|++++. +-.+|||||+| +++.. .++..... .+.. .....+++++
T Consensus 320 ~tpg~LlDyl~------~~~llVlDEa~-~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~ 392 (661)
T 2d7d_A 320 STPYTLLDYFP------DDFMIVVDESH-VTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYV 392 (661)
T ss_dssp CCCBCGGGGSC------SSCEEEEETHH-HHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEE
T ss_pred CCccHHHHHcc------cCcEEEEecHH-HHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEE
Confidence 89999998753 33489999999 54311 11111110 0000 0135789999
Q ss_pred ccCCCHHHHHhhhCCCCEEEecCc----cccceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHH
Q 048746 282 SATLDAEKFSDYFGSAPIFKIPGR----RYPVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEI 357 (755)
Q Consensus 282 SAT~~~~~l~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~ 357 (755)
|||+....+.. . ..+.....+ ..|. +... +........+..+... ...++++||||+|+..++.+++.
T Consensus 393 SAT~~~~~~~~--~-~~~~~~~~r~~~l~~p~-i~v~--~~~~~~~~Ll~~l~~~--~~~~~~vlVf~~t~~~ae~L~~~ 464 (661)
T 2d7d_A 393 SATPGPYEIEH--T-DEMVEQIIRPTGLLDPL-IDVR--PIEGQIDDLIGEIQAR--IERNERVLVTTLTKKMSEDLTDY 464 (661)
T ss_dssp CSSCCHHHHHH--C-SSCEEECCCTTCCCCCE-EEEE--CSTTHHHHHHHHHHHH--HTTTCEEEEECSSHHHHHHHHHH
T ss_pred ecCCChhHHHh--h-hCeeeeeecccCCCCCe-EEEe--cccchHHHHHHHHHHH--HhcCCeEEEEECCHHHHHHHHHH
Confidence 99996544322 1 111221111 1222 1111 2222333333333322 12367999999999999999999
Q ss_pred HHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcc
Q 048746 358 LKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGME 437 (755)
Q Consensus 358 L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~ 437 (755)
|.+.+ +.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|+|++||+++..+. |.
T Consensus 465 L~~~g---------i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~-------G~- 527 (661)
T 2d7d_A 465 LKEIG---------IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKE-------GF- 527 (661)
T ss_dssp HHHTT---------CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCC-------TT-
T ss_pred HHhcC---------CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccc-------cC-
Confidence 99853 67788999999999999999999999999999999999999999999999886211 11
Q ss_pred cccccccCHHhHHhhhcccCCCCCCEEEEeccCcc
Q 048746 438 SLLVHPISKASAMQRAGRSGRTGPGKCFRLYTLHN 472 (755)
Q Consensus 438 ~l~~~p~s~~~~~QR~GRaGR~g~G~~~~l~~~~~ 472 (755)
|.|..+|+||+|||||.++|.|+.++++.+
T Consensus 528 -----p~s~~~~iQr~GRagR~~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 528 -----LRSERSLIQTIGRAARNAEGRVIMYADKIT 557 (661)
T ss_dssp -----TTSHHHHHHHHHTTTTSTTCEEEEECSSCC
T ss_pred -----CCCHHHHHHHhCcccCCCCCEEEEEEeCCC
Confidence 789999999999999999999999998754
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=185.51 Aligned_cols=132 Identities=22% Similarity=0.310 Sum_probs=112.8
Q ss_pred cceEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHH
Q 048746 308 PVEIHYTKAPEADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQA 387 (755)
Q Consensus 308 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 387 (755)
.+.+.|...+..++.. .+..+.... ++++||||+++..++.+++.|...+ +.+..+||+|++.+|.
T Consensus 29 ~i~q~~~~~~~~~K~~----~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g---------~~~~~lhg~~~~~~R~ 94 (191)
T 2p6n_A 29 DVIQEVEYVKEEAKMV----YLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKG---------VEAVAIHGGKDQEERT 94 (191)
T ss_dssp CSEEEEEECCGGGHHH----HHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHT---------CCEEEECTTSCHHHHH
T ss_pred CceEEEEEcChHHHHH----HHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcC---------CcEEEEeCCCCHHHHH
Confidence 4666776666655544 344444433 5789999999999999999998753 6788999999999999
Q ss_pred HHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEE
Q 048746 388 KIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFR 466 (755)
Q Consensus 388 ~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~ 466 (755)
.+++.|++|..+|||||+++++|+|+|++++||++++ |.+..+|+||+||+||.| +|.|+.
T Consensus 95 ~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~------------------p~~~~~~~qr~GR~gR~g~~g~~i~ 156 (191)
T 2p6n_A 95 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDM------------------PEEIENYVHRIGRTGCSGNTGIATT 156 (191)
T ss_dssp HHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSC------------------CSSHHHHHHHHTTSCC---CCEEEE
T ss_pred HHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhCccccCCCCcEEEE
Confidence 9999999999999999999999999999999999999 999999999999999998 699999
Q ss_pred eccCc
Q 048746 467 LYTLH 471 (755)
Q Consensus 467 l~~~~ 471 (755)
|+++.
T Consensus 157 l~~~~ 161 (191)
T 2p6n_A 157 FINKA 161 (191)
T ss_dssp EECTT
T ss_pred EEcCc
Confidence 99865
No 85
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.83 E-value=8.6e-21 Score=185.46 Aligned_cols=136 Identities=19% Similarity=0.286 Sum_probs=103.4
Q ss_pred ccceEEEecCCccchHHHHHHHHHHHHhhC-CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHH
Q 048746 307 YPVEIHYTKAPEADYIDAAIVTVLQIHVTQ-SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTEL 385 (755)
Q Consensus 307 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 385 (755)
..+.+.|...+..++..... .+.... +++++||||+++..++.++..|... ++.+..+||+|++.+
T Consensus 18 ~~i~q~~~~v~~~~K~~~L~----~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~ 84 (185)
T 2jgn_A 18 ENITQKVVWVEESDKRSFLL----DLLNATGKDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRD 84 (185)
T ss_dssp TTEEEEEEECCGGGHHHHHH----HHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT---------TCCEEEEC-------
T ss_pred CCceEEEEEeCcHHHHHHHH----HHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc---------CCceEEEeCCCCHHH
Confidence 34677777777666555333 222222 4689999999999999999999874 377899999999999
Q ss_pred HHHHhCCCCCCCcEEEEeCCcccccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEE
Q 048746 386 QAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKC 464 (755)
Q Consensus 386 r~~i~~~f~~g~~~vlvaT~i~~~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~ 464 (755)
|..+++.|++|..+|||||+++++|+|+|++++||++++ |.+..+|+||+|||||.| +|.|
T Consensus 85 r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~------------------p~s~~~~~Qr~GR~~R~g~~g~~ 146 (185)
T 2jgn_A 85 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL------------------PSDIEEYVHRIGRTGRVGNLGLA 146 (185)
T ss_dssp -CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSC------------------CSSHHHHHHHHTTBCCTTSCEEE
T ss_pred HHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHccccCCCCCCcEE
Confidence 999999999999999999999999999999999999999 999999999999999998 6999
Q ss_pred EEeccCccc
Q 048746 465 FRLYTLHNY 473 (755)
Q Consensus 465 ~~l~~~~~~ 473 (755)
+.|+++.+.
T Consensus 147 ~~~~~~~~~ 155 (185)
T 2jgn_A 147 TSFFNERNI 155 (185)
T ss_dssp EEEECGGGG
T ss_pred EEEEchhhH
Confidence 999997654
No 86
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.82 E-value=5.1e-19 Score=202.40 Aligned_cols=122 Identities=16% Similarity=0.088 Sum_probs=89.1
Q ss_pred HhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHh---C
Q 048746 126 ERKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEM---G 200 (755)
Q Consensus 126 ~~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~---~ 200 (755)
.-+..| +++|...++.+.+|+ |+.+.|||||| +.+|.++... .+..++|++||++||.|.++.+...+ |
T Consensus 75 ~lG~~P-t~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---~G~qv~VvTPTreLA~Qdae~m~~l~~~lG 148 (997)
T 2ipc_A 75 YLGMRH-FDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL---TGKGVHVVTVNDYLARRDAEWMGPVYRGLG 148 (997)
T ss_dssp HTCCCC-CHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT---TCSCCEEEESSHHHHHHHHHHHHHHHHTTT
T ss_pred HhCCCC-cHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH---hCCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 334477 999999999999998 99999999999 5566654332 24579999999999999998776643 4
Q ss_pred CccccEEeeeeeccccCCCCceEEEeCcHHH-HHHHhCC-------CCCC---CCCceEeeccc
Q 048746 201 VKLGHEVGYSIRFEDCTSEKTILKYMTDGML-LREILSE-------PNLE---SYSVLMVDEAH 253 (755)
Q Consensus 201 ~~~g~~vg~~~~~~~~~~~~~~I~v~T~g~L-l~~l~~~-------~~l~---~~~~vIiDEaH 253 (755)
..++..+|............++|+|+|||.| ++++..+ ..++ ++.++||||||
T Consensus 149 Lsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaD 212 (997)
T 2ipc_A 149 LSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVD 212 (997)
T ss_dssp CCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHH
T ss_pred CeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechH
Confidence 4444433321111111123579999999999 7777544 2467 89999999999
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.67 E-value=4.5e-21 Score=184.97 Aligned_cols=118 Identities=19% Similarity=0.361 Sum_probs=106.2
Q ss_pred HHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCccc
Q 048746 329 VLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAE 408 (755)
Q Consensus 329 ~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~ 408 (755)
+..+.....++++||||+++..++.+++.|... ++.+..+||+|++.+|..+++.|++|..+|||||++++
T Consensus 21 l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 91 (170)
T 2yjt_D 21 LVHLLKQPEATRSIVFVRKRERVHELANWLREA---------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAA 91 (170)
Confidence 334444445689999999999999999999874 36788899999999999999999999999999999999
Q ss_pred ccCcCCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCC-CCEEEEeccCccc
Q 048746 409 TSLTIDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTG-PGKCFRLYTLHNY 473 (755)
Q Consensus 409 ~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g-~G~~~~l~~~~~~ 473 (755)
+|+|+|++++||++|+ |.+..+|+||+||+||.| +|.|+.+++..+.
T Consensus 92 ~Gid~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~ 139 (170)
T 2yjt_D 92 RGIDIPDVSHVFNFDM------------------PRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 139 (170)
Confidence 9999999999999999 999999999999999998 6999999987654
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=173.31 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=103.9
Q ss_pred hcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcc-----cCCCccccCccHHHHHHH-HHHHHHHHhC
Q 048746 127 RKTLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGY-----TKQGKVGCTQPRRVAAMS-VAARVSQEMG 200 (755)
Q Consensus 127 ~~~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~-----~~~~~ilv~~P~r~la~q-~a~~~~~~~~ 200 (755)
....+++++|.++++.+.+++++++.+|||+|||+++...+..... ..+++++|++|+++|+.| +.+.+.+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 4456679999999999999999999999999999555444433211 124689999999999999 6666666443
Q ss_pred C--ccccEEeeeeeccc--cCCCCceEEEeCcHHHHHHHhCC-------CCCCCCCceEeecccccCCccchHHHHHHHH
Q 048746 201 V--KLGHEVGYSIRFED--CTSEKTILKYMTDGMLLREILSE-------PNLESYSVLMVDEAHERTLSTDILFGLLKDL 269 (755)
Q Consensus 201 ~--~~g~~vg~~~~~~~--~~~~~~~I~v~T~g~Ll~~l~~~-------~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~ 269 (755)
. .++...|....... ......+|+|+||+.|.+.+... ..+.++++||||||| +.....++..++..+
T Consensus 109 ~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah-~~~~~~~~~~~~~~~ 187 (216)
T 3b6e_A 109 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH-HTNKEAVYNNIMRHY 187 (216)
T ss_dssp TTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHHHH
T ss_pred cCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECch-hhccCCcHHHHHHHH
Confidence 3 22222221100000 00124789999999999988664 457889999999999 565555555555544
Q ss_pred HhcC--------------CCcEEEEeccC
Q 048746 270 IKFR--------------SDLKLLISSAT 284 (755)
Q Consensus 270 ~~~~--------------~~~~~il~SAT 284 (755)
...+ +..++|+||||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 4322 67899999998
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.68 E-value=3.8e-17 Score=170.98 Aligned_cols=148 Identities=9% Similarity=-0.015 Sum_probs=102.5
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEee
Q 048746 130 LPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGY 209 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~ 209 (755)
+.++++|.++++.+..+++.++++|||||||.++..++........++++|++|+++|+.|+.+++.+. +...+..++.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~-~~~~~~~~~~ 190 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY-RLFSHAMIKK 190 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHH-TSCCGGGEEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh-cccccceEEE
Confidence 356999999999988888889999999999965544443322223348999999999999999999874 3332222332
Q ss_pred eeeccccC---CCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 210 SIRFEDCT---SEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 210 ~~~~~~~~---~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
........ ....+|+|+|++.+.+.. ...+.++++||||||| +.... .+...+....+..++++||||+
T Consensus 191 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~--~~~~~~~~~vIiDEaH-~~~~~----~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECH-LATGK----SISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHTTSC--GGGGGGEEEEEEETGG-GCCHH----HHHHHTTTCTTCCEEEEECSSC
T ss_pred EeCCCcchhhhccCCcEEEEchHHHHhhH--HHHHhhCCEEEEECCc-cCCcc----cHHHHHHHhhcCCeEEEEeCCC
Confidence 22221111 156899999999886531 1246788999999999 55432 2222333344689999999999
No 90
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.67 E-value=7.6e-17 Score=183.87 Aligned_cols=128 Identities=15% Similarity=0.163 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEE
Q 048746 323 DAAIVTVLQIHVTQSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVL 402 (755)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlv 402 (755)
......+..+... .+|.+|||++|....+.+++.|.. .. +..++.. ..|..+++.|+.|. .|++
T Consensus 370 ~~~~~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~-----------~~-~~~q~~~--~~~~~~l~~f~~~~-~il~ 433 (540)
T 2vl7_A 370 PIYSILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG-----------IP-VIEENKK--TRHEEVLELMKTGK-YLVM 433 (540)
T ss_dssp HHHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT-----------SC-EEESTTT--CCHHHHHHHHHTSC-CEEE
T ss_pred HHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc-----------Cc-eEecCCC--CcHHHHHHHHhcCC-eEEE
Confidence 3344444454443 468899999999999998876643 11 2345543 35667777787654 5666
Q ss_pred --eCCcccccCcCCC----eeEEEeCCCcccccccCC-------------CCcccccccccCHHhHHhhhcccCCCCC--
Q 048746 403 --ATNIAETSLTIDG----IKYVIDPGFSKVKSYNPR-------------TGMESLLVHPISKASAMQRAGRSGRTGP-- 461 (755)
Q Consensus 403 --aT~i~~~Gidip~----v~~VId~g~~k~~~~~~~-------------~~~~~l~~~p~s~~~~~QR~GRaGR~g~-- 461 (755)
+|+.+.+|||+|+ +++||..|+.-...-|+. .+.... ..|.......|-+||+-|...
T Consensus 434 ~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Q~~GR~iR~~~D~ 512 (540)
T 2vl7_A 434 LVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSI-IHDLTAIVIKQTIGRAFRDPNDY 512 (540)
T ss_dssp EEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHH-HHHHHHHHHHHHHHHHCCSTTCC
T ss_pred EEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHH-HHHHHHHHHHHHhCCcccCCCcc
Confidence 8999999999998 899999887432222221 111100 012226778899999999763
Q ss_pred CEEEEe
Q 048746 462 GKCFRL 467 (755)
Q Consensus 462 G~~~~l 467 (755)
|..+.+
T Consensus 513 g~v~ll 518 (540)
T 2vl7_A 513 VKIYLC 518 (540)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 665544
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.60 E-value=2.1e-15 Score=153.32 Aligned_cols=137 Identities=20% Similarity=0.142 Sum_probs=102.9
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCc-cccEEe
Q 048746 130 LPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVK-LGHEVG 208 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~-~g~~vg 208 (755)
..++++|.++++.+.+++++++++|||+|||.++..++... +.++++++|+++|+.|+.+.+.+ ++.. ++...|
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~~g 166 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSG 166 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEESS
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEEeC
Confidence 45699999999999999999999999999997766555543 45899999999999999999887 6654 433222
Q ss_pred eeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCC
Q 048746 209 YSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLD 286 (755)
Q Consensus 209 ~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~ 286 (755)
......+|+|+|++.+...... ...++++||||||| +.....+ +.+....+..++++||||+.
T Consensus 167 -------~~~~~~~i~v~T~~~l~~~~~~--~~~~~~llIiDEaH-~l~~~~~-----~~i~~~~~~~~~l~LSATp~ 229 (237)
T 2fz4_A 167 -------RIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVH-HLPAESY-----VQIAQMSIAPFRLGLTATFE 229 (237)
T ss_dssp -------SCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEECSS-CCCTTTH-----HHHHHTCCCSEEEEEEESCC
T ss_pred -------CCCCcCCEEEEeHHHHHhhHHH--hcccCCEEEEECCc-cCCChHH-----HHHHHhccCCEEEEEecCCC
Confidence 1224578999999998765531 12468999999999 4443322 23444456788999999993
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.52 E-value=7.6e-13 Score=151.32 Aligned_cols=312 Identities=15% Similarity=0.111 Sum_probs=181.9
Q ss_pred ChHHHHHHHHH----HHcCCeEEEEccCCCchh--ccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHh---CCc
Q 048746 132 IYPYRDELLQA----VNEYQVLVIVGETGSGKT--TQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEM---GVK 202 (755)
Q Consensus 132 l~~~Q~~~l~~----i~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~---~~~ 202 (755)
.++.|.+++.+ +..++++++.||||+||| +++|.+. .+.+++|++||++|+.|+.+.+.... +.+
T Consensus 4 ~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~ 77 (551)
T 3crv_A 4 LRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRNIT 77 (551)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCC
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCcc
Confidence 48999987775 567899999999999999 5566554 24689999999999999987665521 222
Q ss_pred cccEEe---eeee-----------------ccc---------------------------------cCCCCceEEEeCcH
Q 048746 203 LGHEVG---YSIR-----------------FED---------------------------------CTSEKTILKYMTDG 229 (755)
Q Consensus 203 ~g~~vg---~~~~-----------------~~~---------------------------------~~~~~~~I~v~T~g 229 (755)
.....| |... +.. .....++|+|+|++
T Consensus 78 ~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~ 157 (551)
T 3crv_A 78 FSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYP 157 (551)
T ss_dssp EEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETH
T ss_pred EEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCch
Confidence 211112 0000 000 00125699999999
Q ss_pred HHHHHHhCCC--CCCCCCceEeecccccCCcc------------------------------------------------
Q 048746 230 MLLREILSEP--NLESYSVLMVDEAHERTLST------------------------------------------------ 259 (755)
Q Consensus 230 ~Ll~~l~~~~--~l~~~~~vIiDEaHer~~~~------------------------------------------------ 259 (755)
.|++...... ...+..+||||||| ...+.
T Consensus 158 ~l~~~~~~~~~~~~~~~~~vIiDEAH-nl~d~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~~ 236 (551)
T 3crv_A 158 YFFIDRYREFIDIDLREYMIVIDEAH-NLDKVNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYIK 236 (551)
T ss_dssp HHHCHHHHTTSCCCSTTEEEEETTGG-GGGGGGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCEE
T ss_pred HhcCHHHHHhcCCCcCCeEEEEeccc-chHHHHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9998754332 22467889999999 11110
Q ss_pred -----c-hH---HHHH----------------------------HHHHh------------------------cCCC--c
Q 048746 260 -----D-IL---FGLL----------------------------KDLIK------------------------FRSD--L 276 (755)
Q Consensus 260 -----d-~~---~~~l----------------------------~~~~~------------------------~~~~--~ 276 (755)
+ +. ..+. ..+.. .... .
T Consensus 237 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~~ 316 (551)
T 3crv_A 237 VENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNEL 316 (551)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTTC
T ss_pred cccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccCc
Confidence 0 00 0000 00000 0012 6
Q ss_pred EEEEeccCC-CHHHHHhhhCCC-CEE----Ee-cCccccce-EEEec--CCc------cchHHHHHHHHHHHHhhCCCCC
Q 048746 277 KLLISSATL-DAEKFSDYFGSA-PIF----KI-PGRRYPVE-IHYTK--APE------ADYIDAAIVTVLQIHVTQSPGD 340 (755)
Q Consensus 277 ~~il~SAT~-~~~~l~~~~~~~-~~~----~~-~~~~~~v~-~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~ 340 (755)
.+|++|||+ +.+.+.+.++-. +.. .. -+.+++-. ..|.+ .+. ..+.......+..+.... +|.
T Consensus 317 svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~-~g~ 395 (551)
T 3crv_A 317 SIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQA-KAN 395 (551)
T ss_dssp EEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHC-SSE
T ss_pred eEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhC-CCC
Confidence 899999999 555666666654 332 00 11122111 11221 111 223455555566655443 689
Q ss_pred EEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeC--CcccccCcCC---C
Q 048746 341 ILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLAT--NIAETSLTID---G 415 (755)
Q Consensus 341 iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT--~i~~~Gidip---~ 415 (755)
+|||+||....+.+++. .+..+..-..+++..+..+.++ ..+ ..||+|| .....|||+| +
T Consensus 396 ~lvlF~Sy~~l~~v~~~------------~~~~v~~q~~~~~~~~~~~~~~--~~~-~~vl~~v~gg~~~EGiD~~d~~g 460 (551)
T 3crv_A 396 VLVVFPSYEIMDRVMSR------------ISLPKYVESEDSSVEDLYSAIS--ANN-KVLIGSVGKGKLAEGIELRNNDR 460 (551)
T ss_dssp EEEEESCHHHHHHHHTT------------CCSSEEECCSSCCHHHHHHHTT--SSS-SCEEEEESSCCSCCSSCCEETTE
T ss_pred EEEEecCHHHHHHHHHh------------cCCcEEEcCCCCCHHHHHHHHH--hcC-CeEEEEEecceecccccccccCC
Confidence 99999999998888862 1123333333566666555554 233 4799998 6899999999 3
Q ss_pred --eeEEEeCCCccccc----------ccCCCCcccc---cccccCHHhHHhhhcccCCCCC--CEEEEe
Q 048746 416 --IKYVIDPGFSKVKS----------YNPRTGMESL---LVHPISKASAMQRAGRSGRTGP--GKCFRL 467 (755)
Q Consensus 416 --v~~VId~g~~k~~~----------~~~~~~~~~l---~~~p~s~~~~~QR~GRaGR~g~--G~~~~l 467 (755)
.+.||-.|+.-... ++...|.... ...| ......|-+||+=|... |..+.+
T Consensus 461 ~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 528 (551)
T 3crv_A 461 SLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKCNVWLL 528 (551)
T ss_dssp ESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEEEEEEE
T ss_pred cceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccEEEEEe
Confidence 67777666533222 2212222111 2335 67778899999999875 444433
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.46 E-value=4.1e-14 Score=146.30 Aligned_cols=111 Identities=15% Similarity=0.143 Sum_probs=87.0
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCC-CcE-EEEeCCcccccCcCC
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEG-ARK-VVLATNIAETSLTID 414 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g-~~~-vlvaT~i~~~Gidip 414 (755)
.+.++|||++....++.+...|.... ++.+..+||++++.+|..+++.|++| ..+ +|+||+++++|+|++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~--------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~ 182 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 182 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH--------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCT
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcc
Confidence 46899999999999999999998742 25577799999999999999999988 566 789999999999999
Q ss_pred CeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCCCC---CEEEEeccCccc
Q 048746 415 GIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRTGP---GKCFRLYTLHNY 473 (755)
Q Consensus 415 ~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~g~---G~~~~l~~~~~~ 473 (755)
++++||+++. |.+++.+.||+||++|.|. -.+|+|+++...
T Consensus 183 ~a~~VI~~d~------------------~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 183 SANRVIHFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp TCSEEEECSC------------------CSCTTTC--------------CCEEEEEEETTSH
T ss_pred cCCEEEEECC------------------CCChhHHHHHHHhccccCCCCceEEEEEeeCCCH
Confidence 9999999999 9999999999999999983 457888887644
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.19 E-value=1.9e-10 Score=132.56 Aligned_cols=174 Identities=18% Similarity=0.292 Sum_probs=95.6
Q ss_pred EEEEeccCC-CHHHHHhhhCCC-CEEEecCccccc---eEEEecC-C------ccchHHHHHHHHHHHHhhCCCCCEEEE
Q 048746 277 KLLISSATL-DAEKFSDYFGSA-PIFKIPGRRYPV---EIHYTKA-P------EADYIDAAIVTVLQIHVTQSPGDILVF 344 (755)
Q Consensus 277 ~~il~SAT~-~~~~l~~~~~~~-~~~~~~~~~~~v---~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~iLVF 344 (755)
.+|++|||+ +.+.+.+.++-. ..+.++ .+++- .+.+... + ...+.......+..+.... +|.+|||
T Consensus 377 ~~il~SaTL~p~~~~~~~lGl~~~~~~~~-spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~-~g~~lvl 454 (620)
T 4a15_A 377 KTIHMSGTLDPFDFYSDITGFEIPFKKIG-EIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV-KKNTIVY 454 (620)
T ss_dssp EEEEEESSCCSHHHHHHHHCCCCCEEECC-CCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHH-CSCEEEE
T ss_pred eEEEEccCCCcHHHHHHHhCCCceeeecC-CCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC-CCCEEEE
Confidence 468999999 556677666543 112221 22221 1222111 1 1122344444555555444 6789999
Q ss_pred cCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCC--cccccCcCCC--eeEEE
Q 048746 345 LTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATN--IAETSLTIDG--IKYVI 420 (755)
Q Consensus 345 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~--i~~~Gidip~--v~~VI 420 (755)
++|....+.+++.|. .. +.. ..-+++..++..+++.|+ +...||+||. .+..|||+|+ .+.||
T Consensus 455 F~Sy~~l~~v~~~l~-~~--------~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~vi 521 (620)
T 4a15_A 455 FPSYSLMDRVENRVS-FE--------HMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMII 521 (620)
T ss_dssp ESCHHHHHHHTSSCC-SC--------CEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEE
T ss_pred eCCHHHHHHHHHHHH-hc--------chh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEE
Confidence 999999988887765 11 111 444556667888888888 8888999974 8999999987 56777
Q ss_pred eCCCcccccccC-----------C--CCcccccccccCHHhHHhhhcccCCCCC--CEEEEe
Q 048746 421 DPGFSKVKSYNP-----------R--TGMESLLVHPISKASAMQRAGRSGRTGP--GKCFRL 467 (755)
Q Consensus 421 d~g~~k~~~~~~-----------~--~~~~~l~~~p~s~~~~~QR~GRaGR~g~--G~~~~l 467 (755)
-.|+.-.. .|| . .|...-...| ......|-+||+=|... |..+.+
T Consensus 522 I~~lPfp~-~~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 522 LAGLPFPR-PDAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp ESSCCCCC-CCHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred EEcCCCCC-CCHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceEEEEEE
Confidence 76652111 111 0 1110001123 45667899999999774 655544
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.51 E-value=8.2e-08 Score=110.54 Aligned_cols=142 Identities=17% Similarity=0.168 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhc---ccCCCccccCccHHHHHHHHHHHHHHH---hCCccccE
Q 048746 133 YPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAG---YTKQGKVGCTQPRRVAAMSVAARVSQE---MGVKLGHE 206 (755)
Q Consensus 133 ~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~---~~~~~~ilv~~P~r~la~q~a~~~~~~---~~~~~g~~ 206 (755)
.+.|.++++.+..++++++.|++||||||.+-.++.... ...+.+|++++||+.+|.++.+.+... ++......
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~ 230 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 678999999999999999999999999976654432221 123458999999999999988766542 22110000
Q ss_pred EeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccC
Q 048746 207 VGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSAT 284 (755)
Q Consensus 207 vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT 284 (755)
..+.....+ -..++-.+|+... ..........+++||||||+ +++.+.+..++ ...+++.|+|++.=.
T Consensus 231 --~~~~~~~~T--ih~ll~~~~~~~~-~~~~~~~~l~~d~lIIDEAs--ml~~~~~~~Ll---~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 231 --KRIPEDAST--LHRLLGAQPGSQR-LRHHAGNPLHLDVLVVDEAS--MIDLPMMSRLI---DALPDHARVIFLGDR 298 (608)
T ss_dssp --CSCSCCCBT--TTSCC------------CTTSCCSCSEEEECSGG--GCBHHHHHHHH---HTCCTTCEEEEEECT
T ss_pred --hccchhhhh--hHhhhccCCCchH-HHhccCCCCCCCEEEEechh--hCCHHHHHHHH---HhCCCCCEEEEEcch
Confidence 000000000 0111222232210 11111122378999999999 77654333332 234566788776543
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.08 E-value=4.4e-06 Score=95.14 Aligned_cols=126 Identities=19% Similarity=0.279 Sum_probs=77.9
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEee
Q 048746 130 LPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGY 209 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~ 209 (755)
..+++.|.+++..+..++.+++.|++||||||.+-.++... ...+.+|++++||..+|..+.+.. +.... ++-
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l-~~~g~~Vl~~ApT~~Aa~~L~e~~----~~~a~-Tih- 260 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLA-ESLGLEVGLCAPTGKAARRLGEVT----GRTAS-TVH- 260 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEESSHHHHHHHHHHH----TSCEE-EHH-
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHH-HhcCCeEEEecCcHHHHHHhHhhh----cccHH-HHH-
Confidence 45689999999999999999999999999998776555432 224568999999999887776543 21100 000
Q ss_pred eeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 210 SIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 210 ~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
++-... . . .+. ........+++|||||++ +++...+..+++ ......++|++.
T Consensus 261 --~ll~~~-~-~--~~~---------~~~~~~~~~dvlIIDEas--ml~~~~~~~Ll~---~~~~~~~lilvG 313 (574)
T 3e1s_A 261 --RLLGYG-P-Q--GFR---------HNHLEPAPYDLLIVDEVS--MMGDALMLSLLA---AVPPGARVLLVG 313 (574)
T ss_dssp --HHTTEE-T-T--EES---------CSSSSCCSCSEEEECCGG--GCCHHHHHHHHT---TSCTTCEEEEEE
T ss_pred --HHHcCC-c-c--hhh---------hhhcccccCCEEEEcCcc--CCCHHHHHHHHH---hCcCCCEEEEEe
Confidence 000000 0 0 000 011133478999999999 666654433332 234566777754
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.00 E-value=5.2e-06 Score=92.39 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=74.3
Q ss_pred ChHHHHHHHHHHHc-----CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccE
Q 048746 132 IYPYRDELLQAVNE-----YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHE 206 (755)
Q Consensus 132 l~~~Q~~~l~~i~~-----~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~ 206 (755)
+++-|.+++..+.. ...++|.|+.|||||+++-.++..........|++++||..+|..+.+++ +...+..
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~----~~~~~T~ 101 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS----GKEASTI 101 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH----SSCEEEH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh----ccchhhH
Confidence 58889999987543 24999999999999977765554432222237999999999888776654 2211100
Q ss_pred ---EeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 207 ---VGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 207 ---vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
.+.... ...... .+.. .....+.++++|||||++ +++...+..+++. .....+++++.
T Consensus 102 h~~~~~~~~----~~~~~~-~~~~--------~~~~~~~~~~~iiiDE~~--~~~~~~~~~l~~~---~~~~~~~~~vG 162 (459)
T 3upu_A 102 HSILKINPV----TYEENV-LFEQ--------KEVPDLAKCRVLICDEVS--MYDRKLFKILLST---IPPWCTIIGIG 162 (459)
T ss_dssp HHHHTEEEE----ECSSCE-EEEE--------CSCCCCSSCSEEEESCGG--GCCHHHHHHHHHH---SCTTCEEEEEE
T ss_pred HHHhccCcc----cccccc-hhcc--------cccccccCCCEEEEECch--hCCHHHHHHHHHh---ccCCCEEEEEC
Confidence 000000 000111 1111 112456789999999999 5555444333332 22455666654
No 98
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.91 E-value=6.8e-06 Score=95.54 Aligned_cols=66 Identities=23% Similarity=0.323 Sum_probs=54.0
Q ss_pred CChHHHHHHHHHHHc-CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHH
Q 048746 131 PIYPYRDELLQAVNE-YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQ 197 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~~-~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~ 197 (755)
.+++.|.+++..+.. ....||.||+|||||+.+..++... ...+.+|++++||..++.++.+++..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l-~~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQA-VKQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHH-HhCCCeEEEEcCchHHHHHHHHHHHh
Confidence 478999999988665 5689999999999997666665544 23466999999999999999999876
No 99
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.86 E-value=1.4e-05 Score=92.24 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=55.4
Q ss_pred CChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHH
Q 048746 131 PIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQ 197 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~ 197 (755)
.+++.|.+++..+..+..++|.||+|||||+.+-.++.......+.+|++++||..++.++.+++.+
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 3689999999998888899999999999997766555443222456899999999999999998865
No 100
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.58 E-value=0.00019 Score=71.13 Aligned_cols=115 Identities=18% Similarity=0.183 Sum_probs=67.3
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceE
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTIL 223 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I 223 (755)
..+..+++.|++|+||||.+.+.+.... ..+.++++++|...- + . . ..+....|. ....+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~-~~g~kVli~~~~~d~------r-~--~-~~i~srlG~---------~~~~~ 69 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE-YADVKYLVFKPKIDT------R-S--I-RNIQSRTGT---------SLPSV 69 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCCG------G-G--C-SSCCCCCCC---------SSCCE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEEeccCc------h-H--H-HHHHHhcCC---------Ccccc
Confidence 4577899999999999999988877653 234578887775320 0 0 0 011111110 00122
Q ss_pred EEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEecc
Q 048746 224 KYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSA 283 (755)
Q Consensus 224 ~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SA 283 (755)
.+.+...++..+.....-.++++|||||++ .+..+ ....+..+... +..+|+..-
T Consensus 70 ~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ--~l~~~-~ve~l~~L~~~--gi~Vil~Gl 124 (223)
T 2b8t_A 70 EVESAPEILNYIMSNSFNDETKVIGIDEVQ--FFDDR-ICEVANILAEN--GFVVIISGL 124 (223)
T ss_dssp EESSTHHHHHHHHSTTSCTTCCEEEECSGG--GSCTH-HHHHHHHHHHT--TCEEEEECC
T ss_pred ccCCHHHHHHHHHHHhhCCCCCEEEEecCc--cCcHH-HHHHHHHHHhC--CCeEEEEec
Confidence 345566677776654444568999999999 44444 33344554443 667766554
No 101
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.42 E-value=0.00036 Score=66.65 Aligned_cols=47 Identities=21% Similarity=0.080 Sum_probs=29.5
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVA 192 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a 192 (755)
.++.+++.||+|+||||++-.+........+..+++ .+..++...+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~-~~~~~~~~~~~ 83 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-FDTKDLIFRLK 83 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE-EEHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE-EEHHHHHHHHH
Confidence 478999999999999988776655432122223333 45555544443
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.28 E-value=0.002 Score=69.06 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=54.2
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHH-hcccCCCccccCccHHHHHHHHHHHHHHHh
Q 048746 130 LPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHE-AGYTKQGKVGCTQPRRVAAMSVAARVSQEM 199 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~-~~~~~~~~ilv~~P~r~la~q~a~~~~~~~ 199 (755)
+.++++|..++..+...+.+++..+-+.|||+++..+++. .....+..|++++|++.-|..+..++....
T Consensus 162 ~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 4679999999998877788999999999999665544433 333345589999999999988877666543
No 103
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.08 E-value=0.0035 Score=71.70 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=55.3
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHH-HhcccCCCccccCccHHHHHHHHHHHHHHHhC
Q 048746 130 LPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLH-EAGYTKQGKVGCTQPRRVAAMSVAARVSQEMG 200 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~-~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~ 200 (755)
+.++++|..++..+...+.+++.++-|+|||+.+..++. .....++..++++.|++..|..+...+...+.
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 457999999999886778899999999999976654433 23233345899999999999999887776553
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.08 E-value=0.00046 Score=66.34 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=29.9
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRR 185 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r 185 (755)
.++..++.||.||||||.+.+.+.... ..+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~-~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK-LGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH-HTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeecc
Confidence 467899999999999999877766542 2345788887773
No 105
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.05 E-value=0.00081 Score=64.91 Aligned_cols=40 Identities=28% Similarity=0.305 Sum_probs=31.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRR 185 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r 185 (755)
.++..++.||.||||||.+...+.... ..+.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEecc
Confidence 467899999999999988888776652 3456889888873
No 106
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.0006 Score=80.58 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=54.1
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHH
Q 048746 132 IYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQ 197 (755)
Q Consensus 132 l~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~ 197 (755)
+++.|.+++..+..+..++|.||+|||||+.+-.++.......+.+|++++||..+|.++.+++.+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 578999999998888899999999999996665554332111356899999999999999999976
No 107
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.89 E-value=0.0012 Score=71.76 Aligned_cols=122 Identities=20% Similarity=0.203 Sum_probs=68.9
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCc--cHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceE
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ--PRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTIL 223 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~--P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I 223 (755)
+..++++|++|+||||.+-.+..... ..+.+|+++. +.|..+.+....++...|.++- .. ...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~-~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~-----~~-----~~~---- 161 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK-KRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVY-----GE-----PNN---- 161 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEE-----CC-----TTC----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEecCccchhHHHHHHHHHHhcCCcee-----ec-----ccc----
Confidence 46899999999999988776654432 2345555433 5666666655556554443321 00 000
Q ss_pred EEeCcHHHHHHHhCCCCCCCCCceEeecccccCC---ccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 224 KYMTDGMLLREILSEPNLESYSVLMVDEAHERTL---STDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 224 ~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~---~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
..|..+...........++++||||++- |.. +..+...+........++.-+++++|+.
T Consensus 162 --~dp~~i~~~al~~a~~~~~DvvIIDTaG-r~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 162 --QNPIEIAKKGVDIFVKNKMDIIIVDTAG-RHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp --SCHHHHHHHHHHHTTTTTCSEEEEEECC-CSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEECCC-CccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 1132222222222233578999999997 543 3334444444333456677788888876
No 108
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.86 E-value=0.00066 Score=73.67 Aligned_cols=108 Identities=21% Similarity=0.150 Sum_probs=69.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEE
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILK 224 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~ 224 (755)
..+..++.|+.|||||+.+-..+. ...++++.||++++.++.+++.+. |. .......
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~------~~~~lVlTpT~~aa~~l~~kl~~~-~~----------------~~~~~~~ 216 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN------FEEDLILVPGRQAAEMIRRRANAS-GI----------------IVATKDN 216 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC------TTTCEEEESCHHHHHHHHHHHTTT-SC----------------CCCCTTT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc------cCCeEEEeCCHHHHHHHHHHhhhc-Cc----------------cccccce
Confidence 456889999999999987755441 146899999999999888777431 11 0111233
Q ss_pred EeCcHHHHHHHhCCCC--CCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccC
Q 048746 225 YMTDGMLLREILSEPN--LESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSAT 284 (755)
Q Consensus 225 v~T~g~Ll~~l~~~~~--l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT 284 (755)
+.|-+.++- +... ...+++||||||- +++.+.+..++.. .+..++|++.=+
T Consensus 217 V~T~dsfL~---~~~~~~~~~~d~liiDE~s--m~~~~~l~~l~~~----~~~~~vilvGD~ 269 (446)
T 3vkw_A 217 VRTVDSFLM---NYGKGARCQFKRLFIDEGL--MLHTGCVNFLVEM----SLCDIAYVYGDT 269 (446)
T ss_dssp EEEHHHHHH---TTTSSCCCCCSEEEEETGG--GSCHHHHHHHHHH----TTCSEEEEEECT
T ss_pred EEEeHHhhc---CCCCCCCCcCCEEEEeCcc--cCCHHHHHHHHHh----CCCCEEEEecCc
Confidence 666655432 2222 2248999999998 7777665554433 223566766544
No 109
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.85 E-value=0.00086 Score=79.16 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHH
Q 048746 132 IYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQ 197 (755)
Q Consensus 132 l~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~ 197 (755)
+++.|.+++..+..+..++|.||+|||||+.+-.++.......+.+|++++||..+|.++.+++.+
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 578999999998888999999999999997766555443222456899999999999999998865
No 110
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.69 E-value=0.002 Score=68.23 Aligned_cols=135 Identities=16% Similarity=0.122 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHH----HcCC---eEEEEccCCCchhccHHHHHHHhcccCC--CccccCccHHHHHHHHHHHHHHHhCCc
Q 048746 132 IYPYRDELLQAV----NEYQ---VLVIVGETGSGKTTQIPQYLHEAGYTKQ--GKVGCTQPRRVAAMSVAARVSQEMGVK 202 (755)
Q Consensus 132 l~~~Q~~~l~~i----~~~~---~vii~apTGsGKT~~ip~~l~~~~~~~~--~~ilv~~P~r~la~q~a~~~~~~~~~~ 202 (755)
++|+|.+.+..+ .+++ .+++.||.|+|||+.+-.+......... ....-.++. ++.+.. +..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~-------c~~~~~--~~~ 73 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRG-------CQLMQA--GTH 73 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHH-------HHHHHH--TCC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHH-------HHHHhc--CCC
Confidence 367777766553 4443 4999999999999777665544321110 011111111 122222 111
Q ss_pred cccEEeeeeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 203 LGHEVGYSIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 203 ~g~~vg~~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
.. .. .+..+. .+..+.+.....+.+.+...+...+..++|||||| .+..+....+++.+..-.++..+|+.|
T Consensus 74 ~d-~~--~~~~~~---~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead--~l~~~a~naLLk~lEep~~~~~~Il~t 145 (334)
T 1a5t_A 74 PD-YY--TLAPEK---GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAA--LLTDAAANALLKTLEEPPAETWFFLAT 145 (334)
T ss_dssp TT-EE--EECCCT---TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGG--GBCHHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred CC-EE--EEeccc---cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchh--hcCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 10 00 010000 01111111112344444445556788999999999 445555555665554333345555554
Q ss_pred c
Q 048746 283 A 283 (755)
Q Consensus 283 A 283 (755)
-
T Consensus 146 ~ 146 (334)
T 1a5t_A 146 R 146 (334)
T ss_dssp S
T ss_pred C
Confidence 3
No 111
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.61 E-value=0.0018 Score=63.14 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=30.9
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRV 186 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~ 186 (755)
.++..+++|+-||||||.+...+... ...+.+++++.|..-
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~-~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRT-QFAKQHAIVFKPCID 67 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHH-HHTTCCEEEEECC--
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHCCCEEEEEEeccC
Confidence 36678899999999999888887765 234568999888753
No 112
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.51 E-value=0.0044 Score=60.07 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=19.4
Q ss_pred CeEEEEccCCCchhccHHHHHHHh
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+.+++.||+|+|||+++-.+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999998776555443
No 113
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.46 E-value=0.0025 Score=69.40 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=68.3
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhcccCCCccccC--ccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceE
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT--QPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTIL 223 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I 223 (755)
...++++|++|+||||.+..+..... ..+.+++++ -|.|..+.+..+.++...+.++. .. ...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~-~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~-----~~-----~~~---- 164 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQ-KRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF-----GN-----PQE---- 164 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE-----CC-----TTC----
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE-----ec-----CCC----
Confidence 46899999999999988776654432 234455544 37777776666666554443321 00 000
Q ss_pred EEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-cCCCcEEEEeccCC
Q 048746 224 KYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-FRSDLKLLISSATL 285 (755)
Q Consensus 224 ~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-~~~~~~~il~SAT~ 285 (755)
..|..+.+.......-.++++||||.+= |....+-+..-++.+.. ..++.-+++++||.
T Consensus 165 --~dp~~i~~~al~~a~~~~~DvVIIDTaG-rl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~ 224 (443)
T 3dm5_A 165 --KDAIKLAKEGVDYFKSKGVDIIIVDTAG-RHKEDKALIEEMKQISNVIHPHEVILVIDGTI 224 (443)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECCC-CSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEECCC-cccchHHHHHHHHHHHHhhcCceEEEEEeCCC
Confidence 1232222211111112358999999996 55443333333443333 45677788888876
No 114
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.39 E-value=0.00062 Score=62.95 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=20.2
Q ss_pred cCCeEEEEccCCCchhccHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
.++.+++.||+|+|||+++-.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999988765544
No 115
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.38 E-value=0.018 Score=56.69 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=19.2
Q ss_pred CeEEEEccCCCchhccHHHHHHHh
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+.+++.||+|+|||+++-.+....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999998876665443
No 116
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.27 E-value=0.0036 Score=57.37 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=19.1
Q ss_pred HHcCCeEEEEccCCCchhccHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQY 166 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~ 166 (755)
...+..+++.||+|+|||+++-.+
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHHHH
Confidence 356788999999999999665443
No 117
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.0075 Score=62.84 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=29.4
Q ss_pred CCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCCC
Q 048746 243 SYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATLD 286 (755)
Q Consensus 243 ~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~~ 286 (755)
..-+||+||+| +....+.+..++.........+-+|+.++|++
T Consensus 132 ~~~ii~lDE~d-~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 132 RKTLILIQNPE-NLLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp CEEEEEEECCS-SSCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CceEEEEecHH-HhhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 44689999999 55566666666654333344567888899984
No 118
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.20 E-value=0.0066 Score=62.86 Aligned_cols=126 Identities=25% Similarity=0.303 Sum_probs=65.8
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccC--ccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCce
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT--QPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTI 222 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~ 222 (755)
.++.++++|++|+||||.+-.+........+.+|+++ -|.|..+.+....+++..|..+. . .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~--------~------ 167 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE--V--------C------ 167 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--B--------C------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeE--e--------c------
Confidence 4679999999999999888766544322233344432 24444444433333333332210 0 0
Q ss_pred EEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-cCCCcEEEEeccCCCHHHHHhh
Q 048746 223 LKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-FRSDLKLLISSATLDAEKFSDY 293 (755)
Q Consensus 223 I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-~~~~~~~il~SAT~~~~~l~~~ 293 (755)
..+..+...+. .+.++++||||.+- +.........-+..+.. ..++..+++++||.....+.++
T Consensus 168 ---~~~~~l~~al~---~~~~~dlvIiDT~G-~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~ 232 (296)
T 2px0_A 168 ---YTKEEFQQAKE---LFSEYDHVFVDTAG-RNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHI 232 (296)
T ss_dssp ---SSHHHHHHHHH---HGGGSSEEEEECCC-CCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHH
T ss_pred ---CCHHHHHHHHH---HhcCCCEEEEeCCC-CChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHH
Confidence 12333333322 23678999999775 44333222222223322 2244557888788765544443
No 119
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.11 E-value=0.0025 Score=72.59 Aligned_cols=111 Identities=21% Similarity=0.325 Sum_probs=77.8
Q ss_pred ChHHHHHHHHHHHc--CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEee
Q 048746 132 IYPYRDELLQAVNE--YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGY 209 (755)
Q Consensus 132 l~~~Q~~~l~~i~~--~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~ 209 (755)
++.-|.+++..+.. ....+++|+-|.|||+.+-.++.... ..++|++|+.+.+..+.+...+
T Consensus 176 ~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~----~~~~vtAP~~~a~~~l~~~~~~------------ 239 (671)
T 2zpa_A 176 PQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPAKASTDVLAQFAGE------------ 239 (671)
T ss_dssp CCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS----SCEEEECSSCCSCHHHHHHHGG------------
T ss_pred CCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH----hCcEEECCCHHHHHHHHHHhhC------------
Confidence 47889999998776 56789999999999988777766542 3579999999887765533211
Q ss_pred eeeccccCCCCceEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 210 SIRFEDCTSEKTILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 210 ~~~~~~~~~~~~~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
.|-|..|..++. ...+.++||||||= ++....+. .++. ....++||.|+
T Consensus 240 ------------~i~~~~Pd~~~~------~~~~~dlliVDEAA--aIp~pll~----~ll~---~~~~v~~~tTv 288 (671)
T 2zpa_A 240 ------------KFRFIAPDALLA------SDEQADWLVVDEAA--AIPAPLLH----QLVS---RFPRTLLTTTV 288 (671)
T ss_dssp ------------GCCBCCHHHHHH------SCCCCSEEEEETGG--GSCHHHHH----HHHT---TSSEEEEEEEB
T ss_pred ------------CeEEeCchhhhh------CcccCCEEEEEchh--cCCHHHHH----HHHh---hCCeEEEEecC
Confidence 155666766542 24468999999997 66665443 3333 23358888888
No 120
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.10 E-value=0.0058 Score=60.11 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=58.9
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEE
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILK 224 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~ 224 (755)
.++..+++|+-||||||.+...+... ...+.+++++.|..---.. ..+....|.... .+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~-~~~g~kvli~kp~~D~Ryg--~~i~sr~G~~~~-----------------a~~ 77 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRF-QIAQYKCLVIKYAKDTRYS--SSFCTHDRNTME-----------------ALP 77 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH-HTTTCCEEEEEETTCCCC-------------CE-----------------EEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHH-HHCCCeEEEEeecCCccch--HHHHhhcCCeeE-----------------EEe
Confidence 57889999999999998888877765 3345688888887531101 111111121110 011
Q ss_pred EeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 225 YMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 225 v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
+....-++..+ .++++|+||||+ -+. + ...+++.+.. .+..+|+..
T Consensus 78 i~~~~di~~~~------~~~dvViIDEaQ--F~~-~-v~el~~~l~~--~gi~VI~~G 123 (234)
T 2orv_A 78 ACLLRDVAQEA------LGVAVIGIDEGQ--FFP-D-IVEFCEAMAN--AGKTVIVAA 123 (234)
T ss_dssp ESSGGGGHHHH------TTCSEEEESSGG--GCT-T-HHHHHHHHHH--TTCEEEEEC
T ss_pred cCCHHHHHHHh------ccCCEEEEEchh--hhh-h-HHHHHHHHHh--CCCEEEEEe
Confidence 11222244433 568999999999 222 3 5555655544 455666543
No 121
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.07 E-value=0.004 Score=72.14 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=51.7
Q ss_pred CChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHH---HhcccCCCccccCccHHHHHHHHHHHHHHHhC
Q 048746 131 PIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLH---EAGYTKQGKVGCTQPRRVAAMSVAARVSQEMG 200 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~---~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~ 200 (755)
.+++.|.+++.. .+..++|.|+.|||||+.+-.-+. .....+..+|+++.+|+.+|.++.+++.+.++
T Consensus 9 ~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 9 SLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 478999999873 467799999999999966543322 22111234899999999999999999998765
No 122
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.01 E-value=0.015 Score=56.60 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=17.7
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
..+++.||+|+|||+++-.+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999987665543
No 123
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.89 E-value=0.019 Score=60.19 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=24.0
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhcccCCCccccCc
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ 182 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 182 (755)
+..+++.||+|+|||+++-.+...... .+..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~-~~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK-RGYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 468999999999999887666544321 133455543
No 124
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.82 E-value=0.0058 Score=59.41 Aligned_cols=41 Identities=22% Similarity=0.176 Sum_probs=29.8
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRR 185 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r 185 (755)
..|...+++||-||||||.+...+.... ..+.+++++.|..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~-~~g~kvli~kp~~ 66 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGI-YAKQKVVVFKPAI 66 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH-HcCCceEEEEecc
Confidence 4578899999999999987766655442 2345788888865
No 125
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.80 E-value=0.029 Score=59.76 Aligned_cols=51 Identities=29% Similarity=0.443 Sum_probs=30.4
Q ss_pred HHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 230 MLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 230 ~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
.+...+...+...+..+|||||+| .+..+....+++.+....++..+|+.+
T Consensus 106 ~l~~~~~~~~~~~~~~vliiDe~~--~l~~~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 106 DLLDNVQYAPARGRFKVYLIDEVH--MLSRHSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp HHHHHTTSCCSSSSSEEEEEECGG--GSCHHHHHHHHHHHHSCCSSEEEEEEE
T ss_pred HHHHHHhhccccCCeEEEEEECcc--hhcHHHHHHHHHHHhcCCCceEEEEEe
Confidence 444444444556678899999999 445555555555554444445555544
No 126
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.66 E-value=0.0063 Score=58.32 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=59.6
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccH---HHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCc
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPR---RVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKT 221 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~---r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~ 221 (755)
.++..++.||.|||||+.+.+.+..... .+.+++++-|. |.. ..+..+.... . .
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~-~~~kvl~~kp~~D~R~~-~~i~S~~g~~----~-----------------~ 75 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQI-AQYKCLVIKYAKDTRYS-SSFCTHDRNT----M-----------------E 75 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEETTCCCGG-GSCCHHHHHH----S-----------------E
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEccccCccch-hhhhhccCCc----c-----------------c
Confidence 4788999999999999888877766533 34578887776 432 2222222110 0 0
Q ss_pred eEEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 222 ILKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 222 ~I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
-+.+.+..-+... ..++++|+||||| -+ .+ ....+..+.. .+.++|+..
T Consensus 76 A~~~~~~~d~~~~------~~~~DvIlIDEaQ--Ff-k~-~ve~~~~L~~--~gk~VI~~G 124 (195)
T 1w4r_A 76 ALPACLLRDVAQE------ALGVAVIGIDEGQ--FF-PD-IVEFCEAMAN--AGKTVIVAA 124 (195)
T ss_dssp EEEESSGGGGHHH------HHTCSEEEESSGG--GC-TT-HHHHHHHHHH--TTCEEEEEE
T ss_pred ceecCCHHHHHHh------ccCCCEEEEEchh--hh-HH-HHHHHHHHHH--CCCeEEEEe
Confidence 1122222333332 3458999999999 33 44 4555555553 355666543
No 127
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.65 E-value=0.018 Score=59.81 Aligned_cols=122 Identities=19% Similarity=0.228 Sum_probs=62.2
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCc--cHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCce
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ--PRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTI 222 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~--P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~ 222 (755)
.++.++++|++||||||.+-.+..... ..+++|+++. +.|..+.+....+.+..+..+ +. . .+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~-~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~---~~-----~--~s~--- 168 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFRAAAIEQLKIWGERVGATV---IS-----H--SEG--- 168 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE---EC-----C--STT---
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH-hcCCEEEEEccccccHHHHHHHHHHHHHcCCcE---Ee-----c--CCc---
Confidence 456899999999999988776654432 2344555432 445544443334444444332 00 0 000
Q ss_pred EEEeCcHHH-HHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhc-------CCCcEEEEeccCC
Q 048746 223 LKYMTDGML-LREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKF-------RSDLKLLISSATL 285 (755)
Q Consensus 223 I~v~T~g~L-l~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~-------~~~~~~il~SAT~ 285 (755)
..|..+ .+.+.. ....++++|||||+- +....+-+...++.+... .++.-++.+.||.
T Consensus 169 ---~~~~~v~~~al~~-a~~~~~dvvIiDtpg-~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t 234 (306)
T 1vma_A 169 ---ADPAAVAFDAVAH-ALARNKDVVIIDTAG-RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT 234 (306)
T ss_dssp ---CCHHHHHHHHHHH-HHHTTCSEEEEEECC-CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG
T ss_pred ---cCHHHHHHHHHHH-HHhcCCCEEEEECCC-chhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 012222 111110 123567899999996 544444444434443321 2444466667764
No 128
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.63 E-value=0.015 Score=60.53 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=20.2
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
++.+++.||||+|||+++-.+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999997766555443
No 129
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.59 E-value=0.006 Score=55.73 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=18.4
Q ss_pred HHHcCCeEEEEccCCCchhccHH
Q 048746 142 AVNEYQVLVIVGETGSGKTTQIP 164 (755)
Q Consensus 142 ~i~~~~~vii~apTGsGKT~~ip 164 (755)
....+..+++.||+|+|||+++-
T Consensus 23 ~~~~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHHHG
T ss_pred HhCCCCcEEEECCCCccHHHHHH
Confidence 34567889999999999996543
No 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.57 E-value=0.0091 Score=64.11 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=19.2
Q ss_pred eEEEEccCCCchhccHHHHHHHh
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+++.||+|+|||+++-.+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999998886665543
No 131
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.52 E-value=0.011 Score=58.58 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=20.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.++.+++.||+|+|||+++-.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999877655443
No 132
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.39 E-value=0.037 Score=58.59 Aligned_cols=43 Identities=19% Similarity=0.498 Sum_probs=29.4
Q ss_pred CCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 241 LESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 241 l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
..+..++||||+| .++.+....+++.+....++..+|+.|-.+
T Consensus 132 ~~~~~vlilDE~~--~L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEAN--SLTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTT--SSCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCcc--ccCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 3467899999999 377766666777666655566666666544
No 133
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.30 E-value=0.03 Score=56.74 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=18.8
Q ss_pred HcCCeEEEEccCCCchhccHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l 167 (755)
..+..+++.||+|+|||+++-.+.
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHHHHHH
Confidence 356789999999999997654443
No 134
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.29 E-value=0.055 Score=56.53 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=24.4
Q ss_pred CCCCCCceEeecccccCCc-cchHHHHHHHHHhcCCCcEEEEec
Q 048746 240 NLESYSVLMVDEAHERTLS-TDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 240 ~l~~~~~vIiDEaHer~~~-~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
...+..+|||||+| .+. .+....+++.+....++.++|+.+
T Consensus 102 ~~~~~~vliiDEi~--~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 102 FDGRQKVIVIDEFD--RSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp CSSCEEEEEEESCC--CGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred cCCCCeEEEEECCc--ccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 34467899999999 333 444444444444444556666644
No 135
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.25 E-value=0.035 Score=57.81 Aligned_cols=39 Identities=26% Similarity=0.538 Sum_probs=24.3
Q ss_pred CCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 242 ESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 242 ~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
.+..+|||||+| .+..+....+++.+....++.++|+.+
T Consensus 109 ~~~~vliiDe~~--~l~~~~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEAD--ALTQDAQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGG--GSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCC--cCCHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 467899999999 344444445555554444556666644
No 136
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.24 E-value=0.065 Score=55.55 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=32.7
Q ss_pred HHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 230 MLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 230 ~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
.+...+...|...+.+++|||||| .+..+....+++.+..-++...+|+.+
T Consensus 69 ~li~~~~~~p~~~~~kvviIdead--~lt~~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 69 TIKDFLNYSPELYTRKYVIVHDCE--RMTQQAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp HHHHHHTSCCSSSSSEEEEETTGG--GBCHHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred HHHHHHhhccccCCceEEEeccHH--HhCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 345555556667789999999999 445555556666655444455555554
No 137
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.20 E-value=0.0083 Score=69.84 Aligned_cols=67 Identities=22% Similarity=0.343 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHH---HHh-cccCCCccccCccHHHHHHHHHHHHHHHhCC
Q 048746 132 IYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYL---HEA-GYTKQGKVGCTQPRRVAAMSVAARVSQEMGV 201 (755)
Q Consensus 132 l~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l---~~~-~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~ 201 (755)
+++.|.+++.. .+..++|.|+.|||||+.+-.-+ ... +. ...+|+++..|+.+|.++.+|+.+.++.
T Consensus 3 L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~-~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-QARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-CGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC-CHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 68889998875 36789999999999996554322 222 22 2348999999999999999999987653
No 138
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.18 E-value=0.042 Score=60.27 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=19.0
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
...+++.||+|+|||+++-.+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999877655443
No 139
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.03 E-value=0.023 Score=60.92 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=19.2
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+.+++.||+|+|||+++-.+...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999877655543
No 140
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.91 E-value=0.022 Score=56.03 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=26.6
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccC
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT 181 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 181 (755)
+..|..+++.||+||||||++-.++.... ..++.++++
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~~~~v~~~ 57 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGL-RDGDPCIYV 57 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHH-HHTCCEEEE
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHH-HCCCeEEEE
Confidence 34578999999999999988877664432 223455554
No 141
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.80 E-value=0.054 Score=56.20 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=19.1
Q ss_pred HcCCeEEEEccCCCchhccHHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
..+..+++.||||+|||+++-.+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHHH
Confidence 3567899999999999966544433
No 142
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.75 E-value=0.015 Score=72.34 Aligned_cols=69 Identities=12% Similarity=0.105 Sum_probs=52.2
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHHHHhccc-----CCCccccCccHHHHHHHHHHHHHHHhC
Q 048746 130 LPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYLHEAGYT-----KQGKVGCTQPRRVAAMSVAARVSQEMG 200 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~~~~~-----~~~~ilv~~P~r~la~q~a~~~~~~~~ 200 (755)
..+++-|.+++.. .+++++|.|..|||||+.+..-+...... ...+|+|+.+|+++|.++.+|+...++
T Consensus 9 ~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 9 STWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp -CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 4578999998875 37899999999999996655433222111 224899999999999999999988654
No 143
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.73 E-value=0.079 Score=55.81 Aligned_cols=39 Identities=10% Similarity=0.365 Sum_probs=24.5
Q ss_pred CCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEec
Q 048746 242 ESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISS 282 (755)
Q Consensus 242 ~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~S 282 (755)
.+..++||||+| .+..+....+++.+....+...+|+.+
T Consensus 109 ~~~~viiiDe~~--~l~~~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEAD--AMTNAAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGG--GSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCC--CCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 468899999999 344455555555554444555555543
No 144
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.70 E-value=0.014 Score=61.67 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=17.6
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
.++++.||+|+|||+++-.+..
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999977665543
No 145
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.65 E-value=0.05 Score=56.29 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=17.4
Q ss_pred CCeEEEEccCCCchhccHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l 167 (755)
+..+++.||+|+|||+++-.+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4579999999999997665443
No 146
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.60 E-value=0.018 Score=61.60 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=20.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.++.+++.||+|+|||+++-.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999877666543
No 147
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.36 E-value=0.028 Score=65.81 Aligned_cols=69 Identities=20% Similarity=0.187 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHH---HHHhcccCCCccccCccHHHHHHHHHHHHHHHhCC
Q 048746 131 PIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQY---LHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGV 201 (755)
Q Consensus 131 Pl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~---l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~ 201 (755)
.+++.|.+++.. .+..++|.|+.|||||+.+-.- +....-....+|+++..|+.+|.++.+|+.+.++.
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~ 82 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGG 82 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGG
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcc
Confidence 468999998875 3567899999999999655432 22211112348999999999999999999887653
No 148
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.30 E-value=0.082 Score=55.44 Aligned_cols=30 Identities=20% Similarity=0.543 Sum_probs=23.7
Q ss_pred HHHHcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 141 QAVNEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 141 ~~i~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
..+..++.++|.||.|+|||+++-.++...
T Consensus 26 ~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 26 ESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 334456899999999999999887776553
No 149
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.25 E-value=0.044 Score=55.69 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=18.8
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
...+++.||+|+|||+++-.+...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999776655443
No 150
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.12 E-value=0.14 Score=53.63 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=17.7
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
..+++.||+|+|||+++-.+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 5799999999999977655533
No 151
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.94 E-value=0.086 Score=54.86 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=18.9
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
...+++.||+|+|||+++-.+...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999776555443
No 152
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.84 E-value=0.042 Score=59.18 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=18.7
Q ss_pred CCeEEEEccCCCchhccHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~ 168 (755)
.+.+++.||+|+|||+++-.+..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999977655543
No 153
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.78 E-value=0.023 Score=60.67 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=19.9
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
++.+++.||+|+|||+++-.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999887766544
No 154
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.70 E-value=0.028 Score=60.21 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=36.9
Q ss_pred ccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHH--HHcCCeEEEEccCCCchhccHHHHHHH
Q 048746 106 LHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQA--VNEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 106 ~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~--i~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
|..+|++.+-.+...+.|.+. -.+|+. ..+.+.. +...+-+++.||+|||||+++-.+..+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~-v~~Pl~--~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEV-IELPVK--HPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHH-THHHHH--CHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HHHHHh--CHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 344687777667776666654 334422 1222332 233478999999999999665444433
No 155
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.65 E-value=0.036 Score=60.22 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=38.1
Q ss_pred ccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHH--HHcCCeEEEEccCCCchhccHHHHHHH
Q 048746 106 LHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQA--VNEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 106 ~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~--i~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
|-.+|.+.+-.+...+.|.+. -.+|+.. .+.+.. +...+-+|+.||+|||||+++-.+..+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~-V~~pl~~--pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREV-VELPLLS--PERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHH-THHHHHC--HHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHH-HHHHhcC--HHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 335788887777777777654 3344221 223333 234578999999999999665544433
No 156
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.54 E-value=0.073 Score=54.90 Aligned_cols=124 Identities=20% Similarity=0.186 Sum_probs=60.7
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccC--ccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCce
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT--QPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTI 222 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~ 222 (755)
.++.+.++|++|+||||.+-.+..... ..+++|+++ -+.|..+......+.+..+..+- .+ . ..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~-~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~--~~-----~--~~---- 162 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVL--EV-----M--DG---- 162 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH-HTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEE--EC-----C--TT----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEecCCcccHhHHHHHHHhcccCCeEEE--Ec-----C--CC----
Confidence 567888999999999987766544332 224455543 23444443322233343443210 00 0 00
Q ss_pred EEEeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 223 LKYMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 223 I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
..|..+.+.........++++|||||.---..+......+........++.-++.+.|+.
T Consensus 163 ---~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~ 222 (295)
T 1ls1_A 163 ---ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT 222 (295)
T ss_dssp ---CCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ---CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC
Confidence 123333332221111257899999999512233222333333322234555555566664
No 157
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.44 E-value=0.12 Score=53.63 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=17.1
Q ss_pred eEEEEccCCCchhccHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~ 168 (755)
++++.||+|+|||+++-.+..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 499999999999977665543
No 158
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.43 E-value=0.17 Score=55.44 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=18.1
Q ss_pred CeEEEEccCCCchhccHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~ 169 (755)
..+++.||+|+|||+++-.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 36999999999999876555443
No 159
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.37 E-value=0.043 Score=57.42 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=19.2
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+.+++.||+|+|||+++-.+..+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999777655544
No 160
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.16 E-value=0.43 Score=54.46 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCeEEEEccCCCchhccHHHHHHH
Q 048746 137 DELLQAVNEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 137 ~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
..+-..+..+..+++.||+|+||||++-.+...
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHT
T ss_pred hhccccccCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 344445778899999999999999877655443
No 161
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.98 E-value=0.032 Score=60.10 Aligned_cols=61 Identities=20% Similarity=0.316 Sum_probs=35.0
Q ss_pred ccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHH--HHcCCeEEEEccCCCchhccHHHHHHH
Q 048746 106 LHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQA--VNEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 106 ~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~--i~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
|..+|++.+=.+...+.|.+. -.+|+.. .+.+.. +.-.+-+++.||+|||||+++-.+..+
T Consensus 177 p~v~~~DIgGld~~k~~L~e~-v~~Pl~~--pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKES-VELPLTH--PELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHH-HHHHHHC--CHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHH-HHHHHhC--HHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 344677777666666666554 2233211 122222 223478999999999999655444433
No 162
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.84 E-value=0.072 Score=55.78 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=62.5
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccC-c-cHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCc
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT-Q-PRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKT 221 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~-~-P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~ 221 (755)
..+..+.++||+||||||++-.+..... ..+++|++. . +.|..+.+....+++..|..+ +. ... ..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~-~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~---v~-----q~~-~~-- 194 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK-NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKV---IK-----HSY-GA-- 194 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEE---EC-----CCT-TC--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCEEEEEeecccccchHHHHHHHHHHcCceE---Ee-----ccc-cC--
Confidence 3577999999999999988876654332 234455443 2 223334444444444444321 00 000 00
Q ss_pred eEEEeCcHH-HHHHHhCCCCCCCCCceEeecccccCC-ccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 222 ILKYMTDGM-LLREILSEPNLESYSVLMVDEAHERTL-STDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 222 ~I~v~T~g~-Ll~~l~~~~~l~~~~~vIiDEaHer~~-~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
.|.. ..+.+.. ....+++++++|.+- |.- .......+........++..++++.||.
T Consensus 195 -----~p~~~v~e~l~~-~~~~~~d~vliDtaG-~~~~~~~l~~eL~~i~ral~~de~llvLDa~t 253 (328)
T 3e70_C 195 -----DPAAVAYDAIQH-AKARGIDVVLIDTAG-RSETNRNLMDEMKKIARVTKPNLVIFVGDALA 253 (328)
T ss_dssp -----CHHHHHHHHHHH-HHHHTCSEEEEEECC-SCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred -----CHHHHHHHHHHH-HHhccchhhHHhhcc-chhHHHHHHHHHHHHHHHhcCCCCEEEEecHH
Confidence 1111 1111100 011356789999997 433 3333333333333355777888888876
No 163
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.72 E-value=0.66 Score=48.44 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.7
Q ss_pred CeEEEEccCCCchhccHHHHHHHh
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+.++|.||.|+|||+++-.+....
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 689999999999998887776654
No 164
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.72 E-value=0.16 Score=55.01 Aligned_cols=56 Identities=25% Similarity=0.259 Sum_probs=33.8
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccC--ccHHHHHHHHHHHHHHHhCC
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT--QPRRVAAMSVAARVSQEMGV 201 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la~q~a~~~~~~~~~ 201 (755)
.++.++++|++|+||||.+-.+..... ..+++|+++ -+.+..+......+....|.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~-~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv 154 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQRPAAREQLRLLGEKVGV 154 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCSSCHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEeeccccCchhHHHHHHhcccCCc
Confidence 456788999999999987776654432 234455543 35566555443344444443
No 165
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.69 E-value=0.094 Score=51.06 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=32.2
Q ss_pred CCCChHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHH
Q 048746 129 TLPIYPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 129 ~lPl~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
..|-+.-|..++..+..|..+.+.||.||||||++-.+.
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHh
Confidence 346566677888889999999999999999998876554
No 166
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=92.60 E-value=0.38 Score=49.72 Aligned_cols=107 Identities=9% Similarity=-0.003 Sum_probs=64.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcccccCc----
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLT---- 412 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~~Gid---- 412 (755)
.+.+||||+...+..+-+.+.+.. .++....+.|.....+++ . .++...|.+.|....-|+|
T Consensus 124 ~~~kVLIfsq~t~~LDilE~~l~~---------~~~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsag~~gin~~~~ 189 (328)
T 3hgt_A 124 YETETAIVCRPGRTMDLLEALLLG---------NKVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSEGINFTKYPIK 189 (328)
T ss_dssp SCEEEEEEECSTHHHHHHHHHHTT---------SSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCC
T ss_pred CCCEEEEEECChhHHHHHHHHHhc---------CCCceEeCCCCchhhhhh-c----ccCCceEEEEECCCCCCcCcccc
Confidence 367999999999988888887765 347888888885543322 1 2345666666776666675
Q ss_pred -CCCeeEEEeCCCcccccccCCCCcccccccccCHHhHHhhhcccCCC-----CCCEEEEeccCcccc
Q 048746 413 -IDGIKYVIDPGFSKVKSYNPRTGMESLLVHPISKASAMQRAGRSGRT-----GPGKCFRLYTLHNYH 474 (755)
Q Consensus 413 -ip~v~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~QR~GRaGR~-----g~G~~~~l~~~~~~~ 474 (755)
....+.||-+|- .|| |.+ +.+|.+-|+-|. .+-.+|||.+....+
T Consensus 190 nl~~aD~VI~~Ds----dwN-----------p~~--d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 190 SKARFDMLICLDT----TVD-----------TSQ--KDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp CCSCCSEEEECST----TCC-----------TTS--HHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred cCCCCCEEEEECC----CCC-----------CCC--hHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 566778885544 222 222 345544444444 245799999976553
No 167
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.56 E-value=0.04 Score=57.17 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=17.1
Q ss_pred eEEEEccCCCchhccHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~ 168 (755)
.+++.||+|+|||+++-.+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHH
Confidence 599999999999977655543
No 168
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.29 E-value=0.27 Score=54.99 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+.+++.||+|+|||+++-.+..+.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999998876665554
No 169
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.18 E-value=0.077 Score=56.36 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=19.7
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+.+++.||+|+|||+++-.+..+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4579999999999998776665544
No 170
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.14 E-value=0.19 Score=59.07 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=19.1
Q ss_pred CCCceEeecccccCCccchHHHHHHHHHh
Q 048746 243 SYSVLMVDEAHERTLSTDILFGLLKDLIK 271 (755)
Q Consensus 243 ~~~~vIiDEaHer~~~~d~~~~~l~~~~~ 271 (755)
.+++|+|||+| .+..+....+++.+..
T Consensus 579 ~~~vl~lDEi~--~~~~~~~~~Ll~~le~ 605 (758)
T 3pxi_A 579 PYSVVLLDAIE--KAHPDVFNILLQVLED 605 (758)
T ss_dssp SSSEEEEECGG--GSCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCcc--ccCHHHHHHHHHHhcc
Confidence 46799999999 4566666666666554
No 171
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.92 E-value=0.035 Score=61.16 Aligned_cols=39 Identities=10% Similarity=0.171 Sum_probs=28.8
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccC
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT 181 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 181 (755)
+..|..+++.|++|+|||+++-+++.......+..|+++
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~ 238 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF 238 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 456789999999999999888877765533234356654
No 172
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.71 E-value=0.16 Score=55.27 Aligned_cols=121 Identities=22% Similarity=0.272 Sum_probs=59.5
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcccCCCccccC--ccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEE
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT--QPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILK 224 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~ 224 (755)
++++++|++|+||||.+..+........+.+|+++ =|.|..+......+....|..+-. + .. .
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~--~--------~~-~---- 165 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP--S--------DV-G---- 165 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECC--C--------CS-S----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEe--C--------CC-C----
Confidence 57888999999999887766554422213455442 355555554444444444433210 0 00 0
Q ss_pred EeCcHHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHh-cCCCcEEEEeccC
Q 048746 225 YMTDGMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIK-FRSDLKLLISSAT 284 (755)
Q Consensus 225 v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~-~~~~~~~il~SAT 284 (755)
.+|..++..........++++||||=+= +.-..+.+...+..+.. ..++.-++++.|+
T Consensus 166 -~dp~~i~~~~l~~~~~~~~D~VIIDTpG-~l~~~~~l~~~L~~~~~~~~p~~vllVvda~ 224 (433)
T 2xxa_A 166 -QKPVDIVNAALKEAKLKFYDVLLVDTAG-RLHVDEAMMDEIKQVHASINPVETLFVVDAM 224 (433)
T ss_dssp -SCHHHHHHHHHHHHHHTTCSEEEEECCC-CCTTCHHHHHHHHHHHHHSCCSEEEEEEETT
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEECCC-cccccHHHHHHHHHHHHhhcCcceeEEeecc
Confidence 1344332221111111478999999985 43322223333333322 3444445555555
No 173
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.70 E-value=0.052 Score=58.61 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=19.0
Q ss_pred CCeEEE--EccCCCchhccHHHHHHH
Q 048746 146 YQVLVI--VGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii--~apTGsGKT~~ip~~l~~ 169 (755)
...+++ .||+|+|||+++-.+...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 457888 899999999887766544
No 174
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=91.60 E-value=0.99 Score=47.06 Aligned_cols=93 Identities=8% Similarity=0.045 Sum_probs=61.6
Q ss_pred cCccCCCC--CCHHHHHhhcCCCChhhHHHHHhccccc-chHHHHhhhcccccccccccCCcchHHHHHHHHh-ccc---
Q 048746 530 SALNKLGE--LTKVGRRMAEFPLDPMLSKMIVASDKDK-CSDEIITIAAMLSVGNSIFYRPKDKQVHADNARM-NFH--- 602 (755)
Q Consensus 530 g~l~~~~~--lT~lG~~~~~~pl~p~~~~~l~~~~~~~-c~~~~~~i~a~ls~~~~~f~~~~~~~~~~~~~~~-~f~--- 602 (755)
|+++++|. .|++|+++|++++++..++.+.....-. ...+++.+.|.-++.+.+.+|..+.....+.... .+.
T Consensus 1 ~~~~~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~~~~~~~ 80 (328)
T 3im1_A 1 GAMEATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPE 80 (328)
T ss_dssp ---CCCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTTSSSCCCT
T ss_pred CCccCCCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHHHHhCCCcccc
Confidence 56766664 7999999999999999999999876654 4556888888888877777787766554444332 111
Q ss_pred CCC-CCcHHHHHHHHHHHHHc
Q 048746 603 LGN-VGDHIALLRVYNSWREC 622 (755)
Q Consensus 603 ~~~-~~D~~~~l~~~~~~~~~ 622 (755)
... ...|.-..-..++|...
T Consensus 81 ~~~~~~~~~K~~lLLqa~isr 101 (328)
T 3im1_A 81 HTSSGSVSFKVFLLLQAYFSR 101 (328)
T ss_dssp TSCSSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHCC
Confidence 111 23455555556777653
No 175
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.43 E-value=0.32 Score=50.07 Aligned_cols=122 Identities=24% Similarity=0.240 Sum_probs=61.9
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhcccCCCccccC--ccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceE
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT--QPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTIL 223 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I 223 (755)
+..++++|++|+||||.+..+...... .+++++++ -|.|..+..+.+.+.+..|..+-. + . ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~--~-----~---~~---- 162 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG--E-----P---GE---- 162 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEEC--C-----T---TC----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEe--c-----C---CC----
Confidence 567889999999999887766544322 24455543 345555544444444444433210 0 0 00
Q ss_pred EEeCcHHHHHHHhCCCCCCCCCceEeecccccCC--ccchHHHHHHHHH-hcCCCcEEEEeccCC
Q 048746 224 KYMTDGMLLREILSEPNLESYSVLMVDEAHERTL--STDILFGLLKDLI-KFRSDLKLLISSATL 285 (755)
Q Consensus 224 ~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaHer~~--~~d~~~~~l~~~~-~~~~~~~~il~SAT~ 285 (755)
..|..++........-.++++||||-+- +.. ..+.+...++.+. ...++.-++.+.|+.
T Consensus 163 --~~p~~~~~~~l~~~~~~~~D~ViIDTpg-~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 163 --KDVVGIAKRGVEKFLSEKMEIIIVDTAG-RHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECCC-SCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEeCCC-CcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 1233333222111112578999999986 443 3233333233222 234565666666653
No 176
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.21 E-value=0.091 Score=49.71 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=20.9
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.++.++++||+||||||++-.++..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5788999999999999988766543
No 177
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.12 E-value=0.16 Score=55.05 Aligned_cols=26 Identities=35% Similarity=0.531 Sum_probs=21.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHh
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+..++++|||||||||++-.++-..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 45689999999999999887765543
No 178
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.94 E-value=0.13 Score=57.33 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=22.0
Q ss_pred HHHcCCeEEEEccCCCchhccHHHHH
Q 048746 142 AVNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 142 ~i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
.+..+.+++++|||||||||++-.++
T Consensus 256 ~v~~g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 256 AIEHKFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp HHHTTCCEEEEESTTSSHHHHHHHHG
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHH
Confidence 46788999999999999998886554
No 179
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.86 E-value=0.48 Score=52.01 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=24.7
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhcccCCCccccC
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT 181 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 181 (755)
+..+.++|++||||||++-.+..... ..+++|++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~-~~~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFE-QQGKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhh-hcCCeEEEe
Confidence 55799999999999988876654332 234566653
No 180
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.85 E-value=0.1 Score=55.49 Aligned_cols=27 Identities=48% Similarity=0.688 Sum_probs=23.1
Q ss_pred HHHcCCeEEEEccCCCchhccHHHHHH
Q 048746 142 AVNEYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 142 ~i~~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
.+..|..++++|||||||||++-.++-
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHT
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHh
Confidence 367899999999999999998876654
No 181
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.83 E-value=0.069 Score=54.03 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=21.7
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
+..+..++++|||||||||++-.++-
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHH
Confidence 46788999999999999988776543
No 182
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.77 E-value=0.073 Score=56.42 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=21.0
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
..+..++++|||||||||++-.++-.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45668999999999999888766543
No 183
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.60 E-value=0.063 Score=58.92 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=36.3
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHH-HHHhCCc
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARV-SQEMGVK 202 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~-~~~~~~~ 202 (755)
+..|..++|.|++|+|||+++-+++.......+..++++..- .-..|+..|+ +...+..
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE-~~~~~l~~R~~~~~~~i~ 256 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE-MPAAQLTLRMMCSEARID 256 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS-SCHHHHHHHHHHHHTTCC
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC-CCHHHHHHHHHHHHcCCC
Confidence 456789999999999999888887766543334456664321 2223444454 3334443
No 184
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.58 E-value=0.44 Score=49.57 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=25.3
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccC
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT 181 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 181 (755)
..++.+.++|++|+||||.+-.+..... ..+++|+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~-~~g~kVlli 139 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYA-ELGYKVLIA 139 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEE
Confidence 3467899999999999987776544332 234566554
No 185
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.21 E-value=0.073 Score=56.88 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=26.2
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCcccc
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGC 180 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv 180 (755)
+..+..++++|||||||||++-.++-.......+.|++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~ 170 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT 170 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEE
Confidence 45688999999999999988876654332221345543
No 186
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.20 E-value=0.11 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=19.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
.++.++++||+||||||++-.++-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 578899999999999998876654
No 187
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.72 E-value=0.1 Score=50.04 Aligned_cols=38 Identities=26% Similarity=0.284 Sum_probs=27.3
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCcc
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQP 183 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P 183 (755)
....+++..++|.||||.+.-..+.. ...+.+|++++-
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA-~g~G~rV~~vQF 64 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARA-VGHGKNVGVVQF 64 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHH-HHTTCCEEEEES
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEEe
Confidence 34578999999999998877665554 344567877753
No 188
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=89.65 E-value=0.15 Score=49.54 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=20.9
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+..++++||+||||||++-.++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 5788999999999999988766543
No 189
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=89.62 E-value=0.13 Score=49.40 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=20.9
Q ss_pred HcCCeEEEEccCCCchhccHHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
..|..+.++||+||||||++-.+.-
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHh
Confidence 4678999999999999998776543
No 190
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=89.43 E-value=0.32 Score=56.15 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=50.1
Q ss_pred hHHHHHHHHHH----HcCC-eEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCC
Q 048746 133 YPYRDELLQAV----NEYQ-VLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGV 201 (755)
Q Consensus 133 ~~~Q~~~l~~i----~~~~-~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~ 201 (755)
+..|.+.+..+ ..+. ..++.|-||||||+.+..++... +..+||++|...+|.|++..+...++.
T Consensus 14 ~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~----~~~~lvv~~~~~~A~~l~~el~~~~~~ 83 (661)
T 2d7d_A 14 QGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV----NKPTLVIAHNKTLAGQLYSEFKEFFPN 83 (661)
T ss_dssp CTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----CCCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHHHHHcCC
Confidence 77787776653 3443 57788999999998777666443 236899999999999999999987653
No 191
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=89.31 E-value=0.16 Score=48.74 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=21.7
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
..++.++++||+|+||||++-.++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 36889999999999999988776644
No 192
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=89.30 E-value=0.38 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=19.3
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
....+++.||+|+|||+++-.+...
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHH
Confidence 3568999999999999776555433
No 193
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.21 E-value=0.15 Score=49.83 Aligned_cols=26 Identities=42% Similarity=0.595 Sum_probs=20.9
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
+..|+.+.++||+||||||++-.++-
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 46789999999999999998876654
No 194
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.93 E-value=0.16 Score=52.33 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=26.5
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCc
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ 182 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 182 (755)
+..|+.+.|+||+||||||++-.++-.. .|.|+..+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~v 158 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSFA 158 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEECGG
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEEEe
Confidence 4578999999999999998877665433 45665443
No 195
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.88 E-value=0.13 Score=56.08 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=19.4
Q ss_pred CeEEEEccCCCchhccHHHHHHHh
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+++++|++|+||||++-.+....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999998877665443
No 196
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.82 E-value=0.14 Score=53.63 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=21.5
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..+..++++|||||||||++-.++
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGG
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHh
Confidence 6789999999999999999776554
No 197
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=88.79 E-value=0.22 Score=47.74 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=21.6
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+..++.++++|++||||||++-.+....
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3467899999999999999887665443
No 198
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=88.77 E-value=0.13 Score=48.28 Aligned_cols=22 Identities=36% Similarity=0.670 Sum_probs=19.0
Q ss_pred HcCCeEEEEccCCCchhccHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQ 165 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~ 165 (755)
..|..+.++||+||||||++-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3578899999999999988775
No 199
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=88.58 E-value=0.17 Score=48.58 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=20.4
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..+..++++||+||||||++-.+.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~ 27 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIF 27 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3467899999999999999876654
No 200
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.42 E-value=0.16 Score=50.41 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=27.3
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccC
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT 181 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 181 (755)
..|..+++.|++|+|||+++-+++.......+..++++
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~ 65 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceee
Confidence 35789999999999999888887765433333345554
No 201
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.41 E-value=0.36 Score=45.14 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=19.1
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
...+++.||+|+|||+++-.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999877655443
No 202
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.40 E-value=0.43 Score=52.85 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=60.0
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcccCCCccccCc--cHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEE
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ--PRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILK 224 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~--P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~ 224 (755)
.+++++|++|+||||++-.++..... .+.+++++. |.|..+.+.........+.++ ++ . ....
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~-~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v---~~--~----~~~~----- 166 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQR-KGWKTCLICADTFRAGAFDQLKQNATKARIPF---YG--S----YTEM----- 166 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE---EE--C----CCCS-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEeccccchhHHHHHHHHhhccCceE---Ec--c----CCCC-----
Confidence 47889999999999888777654422 234555543 345555444334444334332 11 0 0000
Q ss_pred EeCcHHHH-HHHhCCCCCCCCCceEeecccccCC-ccchHHHHHHHHHhcCCCcEEEEeccCC
Q 048746 225 YMTDGMLL-REILSEPNLESYSVLMVDEAHERTL-STDILFGLLKDLIKFRSDLKLLISSATL 285 (755)
Q Consensus 225 v~T~g~Ll-~~l~~~~~l~~~~~vIiDEaHer~~-~~d~~~~~l~~~~~~~~~~~~il~SAT~ 285 (755)
.|..++ +.+.. ....+++++|||-+= +.. +..+...+........++.-++++.|+.
T Consensus 167 --dp~~i~~~al~~-~~~~~~DvvIIDTpG-~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~ 225 (504)
T 2j37_W 167 --DPVIIASEGVEK-FKNENFEIIIVDTSG-RHKQEDSLFEEMLQVANAIQPDNIVYVMDASI 225 (504)
T ss_dssp --CHHHHHHHHHHH-HHHTTCCEEEEEECC-CCTTCHHHHHHHHHHHHHHCCSEEEEEEETTC
T ss_pred --CHHHHHHHHHHH-HHHCCCcEEEEeCCC-CcccchhHHHHHHHHHhhhcCceEEEEEeccc
Confidence 121121 11110 012578999999996 332 2233333222221235666677777765
No 203
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=88.31 E-value=0.2 Score=47.62 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=19.4
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
++.+.++||+||||||++-.++-.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 467899999999999988766543
No 204
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=88.12 E-value=0.13 Score=48.75 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=20.8
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..+..++++||.||||||++-.+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999999876654
No 205
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=88.01 E-value=0.22 Score=48.13 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=20.4
Q ss_pred HHHcCCeEEEEccCCCchhccHHHHH
Q 048746 142 AVNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 142 ~i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
.+..|+.+.+.||+||||||++-.+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 57889999999999999998876554
No 206
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.99 E-value=0.22 Score=49.34 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=27.4
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccC
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT 181 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 181 (755)
+..|..+++.||+|||||+++-+++.... ..+.+++++
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~-~~~~~v~~~ 57 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGL-KMGEPGIYV 57 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEE
Confidence 34678999999999999988777765542 234456654
No 207
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.84 E-value=0.17 Score=52.06 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=27.6
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccC
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT 181 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 181 (755)
+..|..+++.||+|+||||++-+++.......+..|+++
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 457899999999999999888776655432223355543
No 208
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=87.77 E-value=0.59 Score=50.42 Aligned_cols=39 Identities=10% Similarity=0.236 Sum_probs=30.2
Q ss_pred CceEeecccccCCccchHHHHHHHHHhcCCCcEEEEeccC
Q 048746 245 SVLMVDEAHERTLSTDILFGLLKDLIKFRSDLKLLISSAT 284 (755)
Q Consensus 245 ~~vIiDEaHer~~~~d~~~~~l~~~~~~~~~~~~il~SAT 284 (755)
.++|+||.. -.++......+...+.....+.++|+.|--
T Consensus 317 ~~LlLDEpt-~~LD~~~~~~l~~~L~~l~~~~~vi~itH~ 355 (415)
T 4aby_A 317 PSVVFDEVD-AGIGGAAAIAVAEQLSRLADTRQVLVVTHL 355 (415)
T ss_dssp SEEEESSTT-TTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred CEEEEECCC-CCCCHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 899999998 778887777777776665557788887655
No 209
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.63 E-value=0.21 Score=63.79 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=30.0
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPR 184 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~ 184 (755)
.++++++.||+|+|||+++-+++.+.. ..+.+++++...
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~-~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAE 1464 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEEcc
Confidence 378999999999999988888877664 345567766544
No 210
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=87.56 E-value=0.85 Score=53.41 Aligned_cols=78 Identities=10% Similarity=0.067 Sum_probs=65.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCC-cccccCcCCCe
Q 048746 338 PGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATN-IAETSLTIDGI 416 (755)
Q Consensus 338 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-i~~~Gidip~v 416 (755)
+.+++|.+|++.-+.+.++.+.+..... ++.+..+||+++..+|..+++...+|..+|+|+|. .+...+.+.++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~-----gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l 491 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKF-----NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNL 491 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCS-----SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhc-----CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCC
Confidence 5789999999999999999888876332 36788999999999999888888889999999996 34456788888
Q ss_pred eEEE
Q 048746 417 KYVI 420 (755)
Q Consensus 417 ~~VI 420 (755)
.+||
T Consensus 492 ~lVV 495 (780)
T 1gm5_A 492 GLVI 495 (780)
T ss_dssp CEEE
T ss_pred ceEE
Confidence 8877
No 211
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.44 E-value=0.31 Score=45.51 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=19.6
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
...+++.||+|+|||+++-.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999877666544
No 212
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.28 E-value=0.15 Score=49.57 Aligned_cols=26 Identities=27% Similarity=0.083 Sum_probs=22.2
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
+..+..+++.||+||||||++-+++.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999988887776
No 213
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=87.27 E-value=0.32 Score=45.79 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=20.5
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+.++++|++||||||+.-.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999887665443
No 214
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.18 E-value=0.29 Score=57.27 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=36.5
Q ss_pred cccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHH--HHcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 105 ELHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQA--VNEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 105 ~~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~--i~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+..+|.+.+..+...+.|.+. ..+|+...+ .+.. +...+-+++.||+|+|||+++-.+..+.
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~-v~~p~~~p~--~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQEL-VQYPVEHPD--KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTT-TTTTTTCSG--GGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHH-HHhhhhCHH--HHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh
Confidence 3445788877766666665543 334432111 0110 1224569999999999996665555444
No 215
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=87.17 E-value=0.17 Score=55.26 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=32.2
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAA 188 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la 188 (755)
.+.++++.|+||||||+.+..++... ...+..++|+=|..++.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~-~~~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTG-LLRGDRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHH-HHTTCEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHH-HHCCCcEEEEeCCCchh
Confidence 46789999999999997765554443 23456788888988875
No 216
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=87.12 E-value=0.27 Score=48.18 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=21.5
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+..|+.++++||.||||||++-.++-.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 567899999999999999988766544
No 217
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=86.90 E-value=0.28 Score=48.27 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=17.2
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.++||+||||||++-.+.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3568899999999999999887655
No 218
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=86.86 E-value=0.22 Score=49.35 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=21.8
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||+||||||++-.++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4578999999999999998887665
No 219
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.81 E-value=0.3 Score=47.06 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=21.8
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+..+..++++||+||||||++-.+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 346788999999999999987766544
No 220
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.78 E-value=0.24 Score=48.36 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=22.9
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+.+.+.+++.||+||||+|+.-.+....
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999988776654
No 221
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.77 E-value=0.24 Score=51.66 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=16.9
Q ss_pred CCeEEEEccCCCchhccHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQY 166 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~ 166 (755)
++.++|+||||||||++.-.+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 458999999999999765444
No 222
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.48 E-value=0.26 Score=50.85 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=17.3
Q ss_pred CCeEEEEccCCCchhccHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l 167 (755)
.+.++|+||||||||+++-.+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHH
Confidence 4578999999999997765443
No 223
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.29 E-value=0.34 Score=47.77 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=23.3
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+..+..+++.||+||||||++-+++...
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3467899999999999999888877653
No 224
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=85.96 E-value=0.36 Score=49.81 Aligned_cols=35 Identities=31% Similarity=0.311 Sum_probs=24.5
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCcccc
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGC 180 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv 180 (755)
.+..+.++||+||||||++-.+..... ..+++|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-~~~g~V~l 135 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGKKVMF 135 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEE
Confidence 467899999999999988876654432 23444443
No 225
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=85.96 E-value=0.37 Score=44.57 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=17.4
Q ss_pred CeEEEEccCCCchhccHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQY 166 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~ 166 (755)
..++++|++||||||++-.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999988766
No 226
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=85.95 E-value=0.45 Score=49.08 Aligned_cols=36 Identities=33% Similarity=0.437 Sum_probs=25.5
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHhcccCCCcccc
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGC 180 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv 180 (755)
..+..+.++||+||||||++-.+..... ..+++|.+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~g~V~l 133 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLM 133 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEE
Confidence 4577899999999999988876654432 23455554
No 227
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.93 E-value=0.3 Score=46.80 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=18.2
Q ss_pred cCCeEEEEccCCCchhccHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l 167 (755)
.++.+++.||||+|||+++..++
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999997765543
No 228
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=85.76 E-value=0.37 Score=45.80 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=18.8
Q ss_pred CeEEEEccCCCchhccHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+-+|++||+|+||||++-.++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999987666544
No 229
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=85.48 E-value=0.21 Score=49.57 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=20.6
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.++||.||||||++-.+.
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3468899999999999998876543
No 230
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=85.31 E-value=0.38 Score=45.37 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.0
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+..+++.|++||||||++-.+...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999988766543
No 231
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=85.30 E-value=0.41 Score=46.35 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=19.7
Q ss_pred eEEEEccCCCchhccHHHHHHHh
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+++.||+||||+|+...+....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999998877655
No 232
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.27 E-value=0.26 Score=53.43 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=37.0
Q ss_pred ccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHH--HHcCCeEEEEccCCCchhccHHHHHHH
Q 048746 106 LHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQA--VNEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 106 ~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~--i~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
|..+|.+.+-.+...+.|.+. -.+|+.. .+.+.. +...+-+++.||+|||||+++-.+..+
T Consensus 176 p~~t~~digGl~~~k~~l~e~-v~~pl~~--pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEA-IVLPMKR--ADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHH-THHHHHC--SHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHH-HHHHHhC--HHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 445788887777777766654 2233211 122222 223578999999999999665544443
No 233
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.17 E-value=0.41 Score=48.00 Aligned_cols=21 Identities=38% Similarity=0.371 Sum_probs=17.1
Q ss_pred eEEEEccCCCchhccHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~ 168 (755)
.++++|||||||||+.-.+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999987765543
No 234
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=85.14 E-value=0.37 Score=51.69 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=31.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRV 186 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~ 186 (755)
.+.+++|.|+||||||+++-.++... ...+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~-~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE-YMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-HTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH-HHCCCEEEEEeCCcC
Confidence 57889999999999998876665544 344567888877655
No 235
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=85.11 E-value=0.34 Score=46.86 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=19.0
Q ss_pred cCCeEEEEccCCCchhccHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l 167 (755)
.+..+.|.||+||||||++-.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999998876553
No 236
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=85.06 E-value=0.38 Score=44.68 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=19.9
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+..++++|+.||||||++-.+...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999987665443
No 237
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=84.96 E-value=0.48 Score=43.78 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=18.9
Q ss_pred eEEEEccCCCchhccHHHHHHHh
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.++++|+.||||||++-.+....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999887665443
No 238
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=84.89 E-value=0.41 Score=45.90 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=20.8
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
..+..++++||.||||||++-.+.-.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999987766543
No 239
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=84.89 E-value=0.35 Score=45.54 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=20.8
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHh
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+..++++|+.||||||+.-.+....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999887765443
No 240
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=84.71 E-value=0.4 Score=44.27 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=22.1
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
..|..+.+.||.||||||++-.+.-..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 568899999999999998887665443
No 241
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=84.60 E-value=0.55 Score=49.61 Aligned_cols=35 Identities=34% Similarity=0.447 Sum_probs=24.6
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCcccc
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGC 180 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv 180 (755)
.+..+.++||+||||||++-.+..... ..+++|++
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~G~V~l 190 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLM 190 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc-ccCCEEEE
Confidence 466899999999999988876654432 23455554
No 242
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.56 E-value=0.34 Score=56.71 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=18.6
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
-+-+++.||+|+|||+++-.+..+
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999776554433
No 243
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=84.55 E-value=0.4 Score=49.33 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=16.7
Q ss_pred CeEEEEccCCCchhccHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l 167 (755)
+.++|+||||||||+++-.+.
T Consensus 11 ~~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHH
Confidence 468899999999997765444
No 244
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=84.47 E-value=0.53 Score=43.87 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=19.5
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+..++++|+.||||||+.-.+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999887665544
No 245
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=84.45 E-value=0.51 Score=44.70 Aligned_cols=28 Identities=29% Similarity=0.535 Sum_probs=22.3
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+..+..++++|++||||||+.-.+....
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999887765443
No 246
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.43 E-value=2.4 Score=49.61 Aligned_cols=110 Identities=20% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCC-----------eEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCc
Q 048746 134 PYRDELLQAVNEYQ-----------VLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVK 202 (755)
Q Consensus 134 ~~Q~~~l~~i~~~~-----------~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~ 202 (755)
..-..+..++.... .+++.||||+||| .+|..+++.+
T Consensus 465 ~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT-------------------------~la~~la~~l------- 512 (758)
T 1r6b_X 465 KAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKT-------------------------EVTVQLSKAL------- 512 (758)
T ss_dssp HHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHH-------------------------HHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHH-------------------------HHHHHHHHHh-------
Q ss_pred cccEEeeeeeccccCCCCceEEEeCc---------HHHHHHHhCCCCCCCCCceEeecccccCCccchHHHHHHHHHhcC
Q 048746 203 LGHEVGYSIRFEDCTSEKTILKYMTD---------GMLLREILSEPNLESYSVLMVDEAHERTLSTDILFGLLKDLIKFR 273 (755)
Q Consensus 203 ~g~~vg~~~~~~~~~~~~~~I~v~T~---------g~Ll~~l~~~~~l~~~~~vIiDEaHer~~~~d~~~~~l~~~~~~~ 273 (755)
+..+-..--.+........-+++.| +.+...+...+ .++|+|||++ .+..+.+..++..+....
T Consensus 513 -~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~----~~vl~lDEi~--~~~~~~~~~Ll~~le~~~ 585 (758)
T 1r6b_X 513 -GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHP----HAVLLLDEIE--KAHPDVFNILLQVMDNGT 585 (758)
T ss_dssp -TCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCS----SEEEEEETGG--GSCHHHHHHHHHHHHHSE
T ss_pred -cCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCC----CcEEEEeCcc--ccCHHHHHHHHHHhcCcE
Q ss_pred -----------CCcEEEEec
Q 048746 274 -----------SDLKLLISS 282 (755)
Q Consensus 274 -----------~~~~~il~S 282 (755)
.+..+|+.|
T Consensus 586 ~~~~~g~~~~~~~~~iI~ts 605 (758)
T 1r6b_X 586 LTDNNGRKADFRNVVLVMTT 605 (758)
T ss_dssp EEETTTEEEECTTEEEEEEE
T ss_pred EEcCCCCEEecCCeEEEEec
No 247
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=84.42 E-value=0.5 Score=44.28 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=21.3
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
...+.++++|++||||||++-.+....
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 356789999999999999877665443
No 248
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.40 E-value=0.82 Score=54.47 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=16.6
Q ss_pred CeEEEEccCCCchhccHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l 167 (755)
..+++.||||+|||+++-.+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la 609 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLA 609 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 379999999999997654443
No 249
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=84.33 E-value=0.57 Score=44.47 Aligned_cols=28 Identities=29% Similarity=0.561 Sum_probs=22.3
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+..+..++++|++||||||+.-.+....
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4457789999999999999887665443
No 250
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=84.14 E-value=0.26 Score=48.93 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=20.8
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|+.+.++||.||||||++-.+.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3568999999999999998876553
No 251
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=84.14 E-value=0.52 Score=46.15 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=20.5
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.....+++.|++||||||++-.+....
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999887665443
No 252
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=83.52 E-value=0.28 Score=48.25 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=20.2
Q ss_pred HHcCCeEEEEccCCCchhccHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQY 166 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~ 166 (755)
+..|..+.+.||.||||||++-.+
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYIL 50 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 356889999999999999887654
No 253
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=83.51 E-value=0.42 Score=46.64 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=22.5
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+..|..+.+.||+||||||++-.++..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 446789999999999999988877653
No 254
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=83.41 E-value=0.37 Score=45.59 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=18.4
Q ss_pred CCeEEEEccCCCchhccHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l 167 (755)
+..++++||+||||||++-.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHh
Confidence 3568899999999999887665
No 255
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.32 E-value=0.52 Score=48.49 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=21.2
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
..++.+++.||+|+|||+++-.+....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456789999999999998776655443
No 256
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=83.27 E-value=0.55 Score=48.94 Aligned_cols=39 Identities=26% Similarity=0.245 Sum_probs=28.4
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHhcccC-----CCccccCc
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEAGYTK-----QGKVGCTQ 182 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~-----~~~ilv~~ 182 (755)
..+..+++.||+|||||+++-+++....... +++++++.
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3578999999999999988888877643321 34666653
No 257
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=83.14 E-value=0.46 Score=44.26 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=19.4
Q ss_pred cCCeEEEEccCCCchhccHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
.+..++++|+.||||||++-.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999988766543
No 258
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=82.97 E-value=0.5 Score=43.99 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=18.1
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
..++++|++||||||++-.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999998766554
No 259
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=82.85 E-value=0.56 Score=44.30 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=19.6
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+..++++|+.||||||++-.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999988766543
No 260
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=82.85 E-value=0.29 Score=47.74 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.3
Q ss_pred HHcCCeEEEEccCCCchhccHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQY 166 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~ 166 (755)
+..|+.+.+.||.||||||++-.+
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 356889999999999999887654
No 261
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=82.64 E-value=0.54 Score=44.35 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=20.2
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+..++++|++||||||+.-.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999887665443
No 262
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.61 E-value=0.41 Score=51.89 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=36.8
Q ss_pred ccccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHH--HHcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 106 LHSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQA--VNEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 106 ~~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~--i~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
|-.+|.+.+-.+...+.|.+. -.+|+.. .+.+.. +.-.+-+++.||+|||||+++-.+..+.
T Consensus 176 p~v~~~digGl~~~k~~l~e~-v~~pl~~--p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREV-IELPLKN--PEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHH-HHHHHHC--HHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHH-HHHHHhC--HHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 344677777666666666554 2334211 122222 2335789999999999997665544443
No 263
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=82.59 E-value=0.56 Score=44.17 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=17.7
Q ss_pred eEEEEccCCCchhccHHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+.+.||.||||||++-.++-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999987665433
No 264
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=82.59 E-value=1.8 Score=44.16 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=19.5
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
....+++.||+|+|||+++-.+...
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999776555433
No 265
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=82.50 E-value=0.32 Score=47.93 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=20.9
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|+.+.+.||.||||||++-.+.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999998876553
No 266
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=82.46 E-value=0.5 Score=45.56 Aligned_cols=25 Identities=36% Similarity=0.322 Sum_probs=19.5
Q ss_pred HcCCeEEEEccCCCchhccHHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
..+..+.+.||+||||||++-.+.-
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3466789999999999988766543
No 267
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=82.36 E-value=0.51 Score=45.19 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=20.4
Q ss_pred HcCCeEEEEccCCCchhccHHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
..+..+++.||.||||||++-.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999988765543
No 268
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=82.31 E-value=0.29 Score=51.66 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=28.2
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCcc
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQP 183 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P 183 (755)
.+..++|.||+||||||++-+++.... ..+++++++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~-~~gg~VlyId~ 97 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ-KMGGVAAFIDA 97 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEec
Confidence 578999999999999988887776542 23456666543
No 269
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=82.27 E-value=0.65 Score=47.09 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=31.9
Q ss_pred cccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHHH--HcCCeEEEEccCCCchhccHHHHHHH
Q 048746 107 HSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQAV--NEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 107 ~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~i--~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
..+|.+.+-.+...+.|.+. ..+|+ . ..+++..+ .-.+.+++.||+|||||+++-.+...
T Consensus 6 ~~~~~di~g~~~~~~~l~~~-i~~~~-~-~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMA-ILAPV-R-NPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp ------CCHHHHHHHHHHHH-HTHHH-H-SHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHH-HHHHh-h-CHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34677777766666666553 22331 1 12233332 22345999999999999887655543
No 270
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=82.24 E-value=0.34 Score=48.76 Aligned_cols=25 Identities=44% Similarity=0.581 Sum_probs=20.8
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||.||||||++-.+.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999998876553
No 271
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=82.18 E-value=0.35 Score=48.77 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=21.0
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|+.+.++||.||||||++-.+.
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999998876553
No 272
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=82.11 E-value=0.35 Score=48.81 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=20.6
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||.||||||++-.+.
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3568899999999999998876543
No 273
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.09 E-value=0.47 Score=48.16 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=19.7
Q ss_pred HcCCeEEEEccCCCchhccHHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
...+.+++.||+|+|||+++-.+..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3567899999999999977655543
No 274
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=82.05 E-value=0.63 Score=44.45 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=20.6
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+..+++.|+.||||||++-.+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999998766543
No 275
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=82.00 E-value=0.74 Score=42.48 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=19.7
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
-+++++.|+.||||||+.-.+....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3789999999999999877665443
No 276
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=81.98 E-value=0.59 Score=44.54 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=20.0
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
|..+.++||+||||||++-.+.-..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 4578999999999999887665443
No 277
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=81.87 E-value=0.64 Score=43.85 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=19.8
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+..+++.|++||||||+.-.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999887655443
No 278
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=81.87 E-value=0.35 Score=48.89 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=20.9
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.++||.||||||++-.+.
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3578999999999999999876553
No 279
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.87 E-value=0.35 Score=48.04 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=20.6
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||.||||||++-.+.
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3568899999999999998876543
No 280
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=81.80 E-value=0.31 Score=48.56 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=20.7
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||.||||||++-.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3568899999999999998876553
No 281
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=81.69 E-value=0.41 Score=48.60 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=20.9
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.++||.||||||++-.+.
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999876553
No 282
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=81.60 E-value=0.73 Score=44.56 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=18.8
Q ss_pred eEEEEccCCCchhccHHHHHHHh
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+++.|+.||||||++-.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999887765544
No 283
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=81.55 E-value=0.66 Score=48.11 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=16.6
Q ss_pred CeEEEEccCCCchhccHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l 167 (755)
..++|+||||||||++.-.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999997654443
No 284
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.54 E-value=0.38 Score=48.36 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=20.7
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||.||||||++-.+.
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999998876543
No 285
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=81.41 E-value=0.38 Score=48.52 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=20.8
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|+.+.+.||.||||||++-.+.
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHH
Confidence 3578999999999999998876543
No 286
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=81.18 E-value=0.71 Score=48.23 Aligned_cols=21 Identities=43% Similarity=0.472 Sum_probs=16.7
Q ss_pred CeEEEEccCCCchhccHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l 167 (755)
..++|+|||||||||+.-.+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHH
Confidence 478999999999998654443
No 287
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=81.18 E-value=0.77 Score=42.80 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=19.3
Q ss_pred CeEEEEccCCCchhccHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~ 169 (755)
..+.++|+.||||||++..++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999988876654
No 288
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=81.01 E-value=0.77 Score=44.41 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=18.7
Q ss_pred eEEEEccCCCchhccHHHHHHHh
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.++++|+.||||||++-.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999887765443
No 289
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=80.96 E-value=0.74 Score=43.10 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=18.9
Q ss_pred CeEEEEccCCCchhccHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~ 169 (755)
...+|+||+|||||+++-.+...
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999888766543
No 290
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=80.94 E-value=0.55 Score=48.78 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=25.3
Q ss_pred CeEEEEccCCCchhccHHHHHHHhcccCCCccccCccH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPR 184 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~ 184 (755)
+.++++|+.||||||++-.++-.. .+.++.|+.|.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~---~~~~~aVi~~d 39 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ---HGYKIAVIENE 39 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC---CCCCEEEECSS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc---CCCcEEEEEec
Confidence 478999999999999987665332 34466666653
No 291
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=80.94 E-value=0.74 Score=44.01 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=19.1
Q ss_pred CeEEEEccCCCchhccHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~ 169 (755)
..++++|+.||||||++-.+...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999987766544
No 292
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=80.91 E-value=0.67 Score=48.84 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=27.4
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccC
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT 181 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 181 (755)
..+..+++.||+||||||++-+++..... .+++++++
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~-~g~~vlyi 95 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQA-AGGIAAFI 95 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEE
Confidence 35789999999999999888877765432 34456554
No 293
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=80.91 E-value=0.73 Score=41.96 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=17.9
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
...+|+||+|||||+++-.+.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999988776543
No 294
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=80.88 E-value=0.41 Score=48.55 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=20.9
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||.||||||++-.+.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999998876553
No 295
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=80.86 E-value=0.58 Score=48.41 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=21.4
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
..+..+++.||+|+|||+++-++...
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 35677899999999999888777655
No 296
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=80.82 E-value=1.8 Score=40.57 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=43.8
Q ss_pred CCChHHHHHHHHHHH--cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHH
Q 048746 130 LPIYPYRDELLQAVN--EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVA 192 (755)
Q Consensus 130 lPl~~~Q~~~l~~i~--~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a 192 (755)
.|-.+-|..++..+. ..+..++.|+-|++|+...-.-+.......+.+|.++.|+...+...+
T Consensus 33 ~~~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~ 97 (189)
T 2l8b_A 33 VPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMK 97 (189)
T ss_dssp CCCHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHS
T ss_pred cccCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHH
Confidence 344566888888864 467999999999999944222233333345668999999988766655
No 297
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=80.82 E-value=0.86 Score=44.27 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=20.4
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+..+++.|+.||||||+.-.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5679999999999999887765543
No 298
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=80.80 E-value=0.91 Score=47.21 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=24.3
Q ss_pred HHHHHHHHcCCeEEEEccCCCchhccHHHHHHH
Q 048746 137 DELLQAVNEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 137 ~~~l~~i~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
..++.++..+..+++.||+|+|||+++-.+...
T Consensus 37 ~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 37 NRLLIGICTGGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp HHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHH
Confidence 344445667889999999999999776555443
No 299
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=80.73 E-value=0.48 Score=47.30 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=20.9
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|+.+.+.||.||||||++-.+.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999876553
No 300
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=80.70 E-value=0.33 Score=50.11 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=20.9
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|+.+.++||+||||||++-.++
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCchHHHHHHHHH
Confidence 3578999999999999999876543
No 301
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=80.68 E-value=0.42 Score=48.32 Aligned_cols=24 Identities=42% Similarity=0.664 Sum_probs=20.3
Q ss_pred HHcCCeEEEEccCCCchhccHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQY 166 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~ 166 (755)
+..|..+.+.||.||||||++-.+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIV 53 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHH
Confidence 357889999999999999887654
No 302
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=80.67 E-value=0.81 Score=45.42 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=20.9
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHh
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
....+++.||.||||||++-.+....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999987776543
No 303
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=80.63 E-value=0.69 Score=47.27 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=19.9
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+..++++||+||||||++-.+...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999988776544
No 304
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=80.59 E-value=0.41 Score=48.72 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=20.8
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||.||||||++-.+.
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 4578999999999999998876543
No 305
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=80.56 E-value=0.42 Score=47.80 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=20.7
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||.||||||++-.+.
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3568899999999999998876543
No 306
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=80.51 E-value=0.79 Score=44.25 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHcCCeEEEEccCCCchhccHHHHH
Q 048746 133 YPYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 133 ~~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
++.+...+ .+..+..+++.|+.||||||++-.+.
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 44554443 34667889999999999998876554
No 307
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=80.50 E-value=0.43 Score=44.69 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=18.4
Q ss_pred CeEEEEccCCCchhccHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+.+.++|++||||||++-.++-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999887766543
No 308
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=80.48 E-value=0.42 Score=47.91 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=20.7
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||.||||||++-.+.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999998876553
No 309
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=80.39 E-value=2.6 Score=44.39 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=19.3
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
....+++.||||+|||+++-.+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999766555433
No 310
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=80.32 E-value=0.74 Score=44.80 Aligned_cols=25 Identities=28% Similarity=0.215 Sum_probs=20.5
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
...+++.|+.||||||+.-.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999887766544
No 311
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=80.31 E-value=0.85 Score=42.77 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=19.8
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
-..++++|+.||||||++..++..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 357899999999999988877654
No 312
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=80.28 E-value=0.97 Score=50.00 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchhccHHHHH
Q 048746 134 PYRDELLQAVNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 134 ~~Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
..-..++.++..+..+++.||+|+|||+++-.+.
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa 62 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLIARRLK 62 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGG
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHH
Confidence 3444555667788999999999999996655443
No 313
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=80.22 E-value=0.78 Score=43.95 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=21.0
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHh
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+..+++.|+.||||||++-.+....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35679999999999999987766544
No 314
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=80.20 E-value=0.55 Score=47.49 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=21.0
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||.||||||++-.+.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999876554
No 315
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.09 E-value=0.57 Score=50.68 Aligned_cols=60 Identities=17% Similarity=0.300 Sum_probs=35.1
Q ss_pred cccCCCCccchHHHHHHHHHhcCCCChHHHHHHHHH--HHcCCeEEEEccCCCchhccHHHHHHH
Q 048746 107 HSELPDKSKEKSALEMLQEERKTLPIYPYRDELLQA--VNEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 107 ~~~f~~~~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~--i~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
-.+|.+.+-.+...+.|.+. -.+|+.. .+.... +...+-+++.||+|||||+++-.+..+
T Consensus 168 ~v~~~digGl~~~k~~l~e~-v~~pl~~--p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREA-VELPLVQ--ADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHH-HHHHHHC--HHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHH-HHHHHhC--HHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34677776666666666553 2233211 122222 233567999999999999766554443
No 316
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=79.99 E-value=0.91 Score=43.18 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=18.9
Q ss_pred eEEEEccCCCchhccHHHHHHHh
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+++.|+.||||||++-.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58899999999999887765543
No 317
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=79.97 E-value=0.92 Score=44.11 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=19.5
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+..+.++||+||||||++-.+...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999988766543
No 318
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=79.93 E-value=0.99 Score=43.06 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=19.9
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+..++++|++||||||++-.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999877665443
No 319
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=79.88 E-value=0.82 Score=42.99 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=18.8
Q ss_pred eEEEEccCCCchhccHHHHHHHh
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+++.|+.||||||++-.+....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999887665443
No 320
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=79.86 E-value=0.78 Score=46.53 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=23.0
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+..+..+++.||+||||||++-+++..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 567899999999999999888777653
No 321
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=79.82 E-value=0.56 Score=46.87 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=20.9
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||.||||||++-.+.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999998876554
No 322
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=79.64 E-value=0.77 Score=48.24 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=27.8
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhccc-----CCCccccCc
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYT-----KQGKVGCTQ 182 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~-----~~~~ilv~~ 182 (755)
.+..+++.||+|||||+++-+++...... .+++++++.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 46789999999999998888887764332 234666653
No 323
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=79.61 E-value=0.97 Score=44.80 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=21.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHh
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
....++++||.||||||++-.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999887766443
No 324
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=79.59 E-value=0.72 Score=44.31 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=20.0
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..+..+.++|++||||||++-.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4456789999999999998876554
No 325
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=79.47 E-value=1.3 Score=45.15 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=19.3
Q ss_pred cCCeEEEEccCCCchhccHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
..+.+++.||+|+|||+++-.+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 357899999999999987765543
No 326
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=79.17 E-value=0.73 Score=43.10 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=18.8
Q ss_pred cCCeEEEEccCCCchhccHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l 167 (755)
.+..++++|+.||||||++-.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~ 26 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALE 26 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999998776553
No 327
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=79.15 E-value=0.63 Score=48.27 Aligned_cols=52 Identities=12% Similarity=0.087 Sum_probs=33.6
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVS 196 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~ 196 (755)
+..|..++|.|++|+|||+++-+++..... .+..++++.-- .-..++..|+.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TTCEEEEEESS-SCHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEECC-CCHHHHHHHHH
Confidence 456889999999999999888887765433 23456655321 22334444443
No 328
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=79.10 E-value=0.94 Score=42.30 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=15.8
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+..+++.|+.||||||+.-.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999987766544
No 329
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=79.07 E-value=1 Score=42.23 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=19.1
Q ss_pred CeEEEEccCCCchhccHHHHHHHh
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
..++++|++||||||+.-.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999998876665443
No 330
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=78.99 E-value=0.86 Score=44.80 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=21.8
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHh
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+..+++.|+.||||||++-.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999988776554
No 331
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=78.80 E-value=1.1 Score=43.40 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=20.2
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+..+++.|++||||||++-.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999887665544
No 332
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=78.79 E-value=0.89 Score=42.78 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=20.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+..++++|+.||||||++-.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999887765443
No 333
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=78.75 E-value=1 Score=41.66 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=18.7
Q ss_pred CeEEEEccCCCchhccHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~ 169 (755)
..+++.|+.||||||+.-.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999887766544
No 334
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=78.72 E-value=1 Score=43.53 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=18.8
Q ss_pred eEEEEccCCCchhccHHHHHHHh
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+++.|++||||||++-.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999887765543
No 335
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=78.64 E-value=0.87 Score=43.70 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=20.6
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+..++++|+.||||||++-.+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999988766543
No 336
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=78.49 E-value=0.69 Score=49.65 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=21.9
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHh
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+..+.|.||+||||||++-+++...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 57899999999999999888776544
No 337
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=78.48 E-value=1 Score=43.00 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=19.4
Q ss_pred CeEEEEccCCCchhccHHHHHHHh
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
..++++|+.||||||+.-.+....
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999887665443
No 338
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=78.39 E-value=1 Score=42.26 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=19.2
Q ss_pred CeEEEEccCCCchhccHHHHHHHh
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
..++++|++||||||+.-.+....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999877665443
No 339
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=78.28 E-value=0.93 Score=48.37 Aligned_cols=20 Identities=45% Similarity=0.630 Sum_probs=15.9
Q ss_pred CeEEEEccCCCchhccHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQY 166 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~ 166 (755)
..++|+||||||||+++-.+
T Consensus 3 ~~i~i~GptgsGKttla~~L 22 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQL 22 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHH
Confidence 46889999999999765443
No 340
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.22 E-value=0.73 Score=58.95 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=52.2
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCce
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTI 222 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~ 222 (755)
+..++++++.||+|||||+++-+++.+... .+.+++++. .-++..++. ++.+|..+....-+ .+...
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k-~Ge~~~Fit-~ee~~~~L~---a~~~G~dl~~l~~~--------~pd~~ 1144 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFID-AEHALDPIY---ARKLGVDIDNLLCS--------QPDTG 1144 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEC-TTSCCCHHH---HHHTTCCTTTCEEE--------CCSSH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEE-ccccHHHHH---HHHcCCChhHheee--------cCcch
Confidence 346789999999999999999988887643 355565542 223333333 23466655432211 01000
Q ss_pred EEEeCcHHHHHHHhCCCCCCCCCceEeeccc
Q 048746 223 LKYMTDGMLLREILSEPNLESYSVLMVDEAH 253 (755)
Q Consensus 223 I~v~T~g~Ll~~l~~~~~l~~~~~vIiDEaH 253 (755)
-+...+.+.+. ....+++|||||+-
T Consensus 1145 ---e~~~~i~~~l~---~~~~~dlvVIDsl~ 1169 (2050)
T 3cmu_A 1145 ---EQALEICDALA---RSGAVDVIVVDSVA 1169 (2050)
T ss_dssp ---HHHHHHHHHHH---HHTCCSEEEESCGG
T ss_pred ---HHHHHHHHHHH---HhCCCCEEEECCcc
Confidence 01122222222 24568999999977
No 341
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=78.20 E-value=1.1 Score=43.07 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=20.9
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+..++++|+.||||||++-.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999988776544
No 342
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=78.20 E-value=0.79 Score=57.84 Aligned_cols=87 Identities=18% Similarity=0.177 Sum_probs=55.4
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCCccccEEeeeeeccccCCCCceEE
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILK 224 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~I~ 224 (755)
.|+.+.+.||.||||||++..++.+.. ..++.++++.+--+|.... ++.+|..+.. ++
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~-~~g~~~~~i~~e~~~~~~~----~~~~Gv~~~~-----------------l~ 1487 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDPIY----ARKLGVDIDN-----------------LL 1487 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEECTTSCCCHHH----HHHTTCCGGG-----------------CE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEecCCCCCHHH----HHHcCCCHHH-----------------eE
Confidence 468999999999999999988887753 3466788887765554443 3446666533 44
Q ss_pred EeCcH---HHHHHHhCCCCCCCCCceEeeccc
Q 048746 225 YMTDG---MLLREILSEPNLESYSVLMVDEAH 253 (755)
Q Consensus 225 v~T~g---~Ll~~l~~~~~l~~~~~vIiDEaH 253 (755)
+..|. .-+..+..-..-..+++||||.+-
T Consensus 1488 ~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1488 CSQPDTGEQALEICDALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred EeCCCcHHHHHHHHHHHHHcCCCCEEEEccHH
Confidence 44442 222211111112357899999987
No 343
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=78.18 E-value=0.56 Score=48.05 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=20.7
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|+.+.+.||.||||||++-.+.
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3578899999999999998876543
No 344
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=78.17 E-value=1.1 Score=44.70 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=19.6
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
..+.+++.||+|+|||+++-.+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999776655443
No 345
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=78.01 E-value=1.1 Score=41.69 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=18.8
Q ss_pred CeEEEEccCCCchhccHHHHHHHh
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+.++++|+.||||||+.-.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999998876665443
No 346
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=78.00 E-value=1.2 Score=43.79 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=21.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHh
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
....+++.|++||||||++-.+....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999887766544
No 347
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=77.96 E-value=0.63 Score=44.84 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=18.3
Q ss_pred eEEEEccCCCchhccHHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+++.|+.||||||++-.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999998766543
No 348
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=77.96 E-value=1.2 Score=44.38 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=21.0
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.++.++++|+.||||||+.-.+...
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999887766543
No 349
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=77.87 E-value=0.92 Score=47.79 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=22.3
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHh
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.|..+.+.||+||||||++-+++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56889999999999999888877654
No 350
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=77.82 E-value=0.96 Score=47.72 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=27.4
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCc
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ 182 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 182 (755)
.++.+++.|++|+|||+++-+++..... .+.+++++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~-~g~~vlyid 98 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFID 98 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEe
Confidence 5789999999999999888877765432 344566554
No 351
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=77.63 E-value=1.4 Score=45.97 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=19.0
Q ss_pred CeEEEEccCCCchhccHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~ 169 (755)
..+++.||+|+||||++-.+...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999887665544
No 352
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=77.53 E-value=1.1 Score=44.68 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=18.9
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+.+++.||+|+|||+++-.+...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999877655443
No 353
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=77.44 E-value=1.2 Score=44.35 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=21.5
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
..+..+.|.||+||||||++-.+....
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999998887665443
No 354
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=77.05 E-value=0.77 Score=45.11 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=18.5
Q ss_pred cCCeEEEEccCCCchhccHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQY 166 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~ 166 (755)
.|..+.+.|+.||||||++-.+
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L 40 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 5678999999999999987554
No 355
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=76.93 E-value=0.74 Score=50.24 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=33.5
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARV 195 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~ 195 (755)
+..|..++|.|++|+|||+++-+++...... +.+++++.-- .-..|+..|+
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlE-ms~~ql~~R~ 244 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLE-MGKKENIKRL 244 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSS-SCTTHHHHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECC-CCHHHHHHHH
Confidence 4567899999999999998888887765433 4456655321 2233444444
No 356
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=76.92 E-value=1.2 Score=43.44 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=18.8
Q ss_pred eEEEEccCCCchhccHHHHHHHh
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+++.|+.||||||++-.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999987765443
No 357
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=76.90 E-value=0.97 Score=47.91 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=17.5
Q ss_pred eEEEEccCCCchhccHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~ 168 (755)
..+|+|||||||||++-.+.+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 688999999999988866543
No 358
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=76.82 E-value=1.3 Score=40.68 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=18.4
Q ss_pred eEEEEccCCCchhccHHHHHHHh
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+++.|+.||||||+.-.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999877665433
No 359
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=76.79 E-value=1.7 Score=45.07 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=17.0
Q ss_pred eEEEEccCCCchhccHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l 167 (755)
.+-+.||+||||||++-.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999998876553
No 360
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=76.76 E-value=0.76 Score=48.05 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=28.6
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccC
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT 181 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 181 (755)
+..+..+++.|++|+|||+++.+++..... .+..|+++
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~f 80 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVF 80 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEE
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEE
Confidence 456789999999999999888877765433 34456655
No 361
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=76.56 E-value=3.8 Score=50.28 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=65.2
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCC-cccccCcCCC
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATN-IAETSLTIDG 415 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-i~~~Gidip~ 415 (755)
.+.+++|.+|++.-+.+.++.+.+.... .++.+..+++..+..++..+++....|..+|+|+|. .+...+.+.+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~-----~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~ 725 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-----WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 725 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTT-----TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhc-----CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccc
Confidence 3568999999999999999988876532 236788899999999998888888889999999994 5556688899
Q ss_pred eeEEE
Q 048746 416 IKYVI 420 (755)
Q Consensus 416 v~~VI 420 (755)
+.+||
T Consensus 726 l~lvI 730 (1151)
T 2eyq_A 726 LGLLI 730 (1151)
T ss_dssp EEEEE
T ss_pred cceEE
Confidence 98877
No 362
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=76.42 E-value=1.1 Score=42.23 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=18.0
Q ss_pred eEEEEccCCCchhccHHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+++.|+.||||||++-.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999988766543
No 363
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=76.28 E-value=1.1 Score=44.49 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=19.0
Q ss_pred CeEEEEccCCCchhccHHHHHHHh
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+.+++.||+|||||+++-.+....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999998876665443
No 364
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=76.17 E-value=1.3 Score=45.27 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=19.2
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
...+++.||+|+|||+++-.+....
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999997766555444
No 365
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=76.17 E-value=3.4 Score=44.20 Aligned_cols=79 Identities=11% Similarity=0.149 Sum_probs=60.8
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCccc----ccC
Q 048746 336 QSPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAE----TSL 411 (755)
Q Consensus 336 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~~----~Gi 411 (755)
..++++||.+|++.-+.++++.+...+. .++.+..+||+.+..++...++....|..+|+|+|.-.- .-+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~ 135 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD------EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKL 135 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC------SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc------CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHh
Confidence 4568999999999999999999988542 247889999999998777766666677789999996321 124
Q ss_pred cCCCeeEEE
Q 048746 412 TIDGIKYVI 420 (755)
Q Consensus 412 dip~v~~VI 420 (755)
+..++++||
T Consensus 136 ~~~~~~~iV 144 (414)
T 3oiy_A 136 SQKRFDFVF 144 (414)
T ss_dssp TTCCCSEEE
T ss_pred ccccccEEE
Confidence 556777776
No 366
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=75.99 E-value=0.85 Score=48.09 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=20.7
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||.||||||++-.+.
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHHHHHHh
Confidence 3568899999999999998876553
No 367
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=75.87 E-value=0.97 Score=45.51 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=19.5
Q ss_pred HHcCCeEEEEccCCCchhccHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQY 166 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~ 166 (755)
+. |..+.+.||.||||||++-.+
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l 50 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAI 50 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHH
T ss_pred EC-CEEEEEECCCCCCHHHHHHHH
Confidence 45 889999999999999887654
No 368
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=75.71 E-value=0.83 Score=50.78 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=35.3
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARV 195 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~ 195 (755)
+..+..++|.|++|+|||+++.+++.......+.+++++.- -.-..|+..|+
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~-E~s~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML-EESVEETAEDL 290 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES-SSCHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec-cCCHHHHHHHH
Confidence 55678999999999999999988887764432445665532 22234555554
No 369
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=75.60 E-value=1.1 Score=46.46 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=19.6
Q ss_pred HcCCeEEEEccCCCchhccHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l 167 (755)
..+..+.|.||+||||||++-.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHH
Confidence 456789999999999998876553
No 370
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=75.50 E-value=1.1 Score=42.92 Aligned_cols=23 Identities=43% Similarity=0.286 Sum_probs=18.7
Q ss_pred cCCeEEEEccCCCchhccHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l 167 (755)
.+..+.++|++||||||++-.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999998876554
No 371
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=75.42 E-value=2.3 Score=46.70 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=42.8
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHHHhCC
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQEMGV 201 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~~~~~ 201 (755)
.+....+.|-||||||+.+..++... +..++|++|....|.+++..+...++.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~~----~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAERH----AGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHHS----SSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHHh----CCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 46678999999999998777766443 346899999999999999999876554
No 372
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=75.41 E-value=1.1 Score=44.93 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=18.0
Q ss_pred CCeEEEEccCCCchhccHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l 167 (755)
...++++|++||||||++-.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 4579999999999998766554
No 373
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=75.24 E-value=1.2 Score=41.87 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=17.5
Q ss_pred eEEEEccCCCchhccHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~ 168 (755)
.+++.|+.||||||+.-.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998876644
No 374
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=75.21 E-value=1.6 Score=44.58 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=18.2
Q ss_pred CeEEEEccCCCchhccHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~ 169 (755)
..+++.||+|+|||+++-.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999776655443
No 375
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=75.17 E-value=0.48 Score=44.72 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=25.4
Q ss_pred EEEEccCCCchhccHHHHHHHhcccCCCccccCccHHHHHHHHHHHHHH
Q 048746 149 LVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQPRRVAAMSVAARVSQ 197 (755)
Q Consensus 149 vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~a~~~~~ 197 (755)
++|.|++|||||+++-++... +..++++.+-...-.+..++++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-----APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-----CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-----CCCeEEEecCCCCCHHHHHHHHH
Confidence 689999999999888777633 23566665533222333444443
No 376
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=75.03 E-value=1 Score=44.70 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=20.2
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
+..+..+-+.||.||||||++-.+.-
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999988765543
No 377
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=74.92 E-value=1.2 Score=42.72 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=16.9
Q ss_pred CeEEEEccCCCchhccHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l 167 (755)
+.+++.||+|+|||+.+-.++
T Consensus 59 n~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999997765443
No 378
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=74.82 E-value=19 Score=33.75 Aligned_cols=76 Identities=11% Similarity=0.104 Sum_probs=54.2
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCc-----cc-cc
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNI-----AE-TS 410 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i-----~~-~G 410 (755)
...++||.+|++.-+..+++.+....... ++..+..++|+.+..++...+. +...|+|+|.- +. ..
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~ 141 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHM----GGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGV 141 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTS----SSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTC
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhc----CCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCC
Confidence 34689999999999999998888765322 2467888999988776655442 35689999962 22 23
Q ss_pred CcCCCeeEEE
Q 048746 411 LTIDGIKYVI 420 (755)
Q Consensus 411 idip~v~~VI 420 (755)
+++.++++||
T Consensus 142 ~~~~~~~~lV 151 (206)
T 1vec_A 142 AKVDHVQMIV 151 (206)
T ss_dssp SCCTTCCEEE
T ss_pred cCcccCCEEE
Confidence 4667777776
No 379
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=74.74 E-value=1.2 Score=49.18 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=20.0
Q ss_pred HcCCeEEEEccCCCchhccHHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
..+.+++|.|+||||||+++-.++.
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999977655543
No 380
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=74.63 E-value=1.2 Score=47.36 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=18.6
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
...+++||||+|||+++-.+.+
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999988776654
No 381
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=74.57 E-value=1.4 Score=46.31 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=20.0
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
++.+++.||+|+|||+++-.+....
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999998776665554
No 382
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=74.56 E-value=0.97 Score=48.02 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.4
Q ss_pred HcCCeEEEEccCCCchhccHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l 167 (755)
..|..+.+.||.||||||++-.+.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEcCCCchHHHHHHHHH
Confidence 568899999999999998876553
No 383
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=74.54 E-value=0.96 Score=47.63 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=20.9
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||.||||||++-.+.
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHh
Confidence 3578999999999999998876553
No 384
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=74.48 E-value=1.1 Score=44.77 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=20.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+..++++|++||||||++-.+...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999987766544
No 385
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=74.44 E-value=1.3 Score=46.81 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=27.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHhcccCCCccccCc
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCTQ 182 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 182 (755)
.+..++|.|++|+|||+++.+++..... .+.+++++.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~-~g~~vlyi~ 109 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK-AGGTCAFID 109 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH-CCCeEEEEE
Confidence 5789999999999999888777665432 244566553
No 386
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=74.38 E-value=1 Score=46.46 Aligned_cols=38 Identities=11% Similarity=-0.042 Sum_probs=27.9
Q ss_pred CCeEEEEccCCCchhccHHHHHHHhccc-CCCccccCccH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEAGYT-KQGKVGCTQPR 184 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~ 184 (755)
+ .+++.||+|||||+++.+++...... .+++++++..-
T Consensus 29 G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 29 G-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp E-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred C-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 5 78999999999999888887765322 24577776543
No 387
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=74.34 E-value=0.98 Score=48.23 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=21.2
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||+||||||++-.+.
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHH
T ss_pred EcCCCEEEEECCCCChHHHHHHHHh
Confidence 4578999999999999999886554
No 388
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=74.31 E-value=1.5 Score=45.52 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=19.1
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+.+++.||+|+|||+++-.+..+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 368999999999999776655544
No 389
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=74.29 E-value=0.96 Score=44.85 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=18.9
Q ss_pred HcCCeEEEEccCCCchhccHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l 167 (755)
.. ..+.+.||.||||||++-.+.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHHHHh
Confidence 45 788999999999999876554
No 390
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=74.17 E-value=1.8 Score=53.42 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=38.0
Q ss_pred eEEEEccCCCchhccHHHHHHHhccc-----------CCCccccCccHHHHHHHHHHHHHHHh
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEAGYT-----------KQGKVGCTQPRRVAAMSVAARVSQEM 199 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~~~~-----------~~~~ilv~~P~r~la~q~a~~~~~~~ 199 (755)
..+|.|.-|||||+.+...+...... ...+|+|+.=|+.+|.++..|+.+.+
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 44999999999995555433322121 12389999999999999999998765
No 391
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=74.07 E-value=1.4 Score=42.00 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=17.2
Q ss_pred eEEEEccCCCchhccHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~ 168 (755)
.+.++|+.||||||++-.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 588999999999988765543
No 392
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=74.06 E-value=1.1 Score=46.35 Aligned_cols=27 Identities=30% Similarity=0.261 Sum_probs=22.7
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHHh
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
..+..+++.||+|||||+++-+++...
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346889999999999998888887653
No 393
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=73.91 E-value=1 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.3
Q ss_pred HcCCeEEEEccCCCchhccHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l 167 (755)
..|..+.+.||.||||||++-.+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHHHHH
Confidence 468899999999999998876553
No 394
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=73.48 E-value=2.4 Score=44.60 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=19.9
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
..+.+++.||+|+|||+++-.+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999777655443
No 395
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=73.40 E-value=2.2 Score=45.86 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCeEEEEccCCCchhccHHHHH
Q 048746 136 RDELLQAVNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 136 Q~~~l~~i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
++.+-.....+..+.++||+|+||||++-.++
T Consensus 59 ~~~L~~~~~~~~~valvG~nGaGKSTLln~L~ 90 (413)
T 1tq4_A 59 SDALKEIDSSVLNVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp HHHHHHHHHCCEEEEEEECTTSSHHHHHHHHH
T ss_pred hhhhhhcccCCeEEEEECCCCCcHHHHHHHHh
Confidence 33333334556689999999999999887654
No 396
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=73.35 E-value=1.1 Score=42.90 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=18.5
Q ss_pred HcCCeEEEEccCCCchhccHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQY 166 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~ 166 (755)
..+..++++|++|+||||++-.+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l 46 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTL 46 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 45668999999999999876443
No 397
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=73.32 E-value=1.4 Score=42.20 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=16.7
Q ss_pred eEEEEccCCCchhccHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l 167 (755)
.+.+.|+.||||||+.-.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999998876553
No 398
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=73.20 E-value=1.1 Score=47.33 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.3
Q ss_pred HcCCeEEEEccCCCchhccHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l 167 (755)
..|..+.+.||.||||||++-.+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCchHHHHHHHHh
Confidence 468899999999999998876553
No 399
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=73.20 E-value=6.1 Score=38.67 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=55.1
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCC-----ccc-ccC
Q 048746 338 PGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATN-----IAE-TSL 411 (755)
Q Consensus 338 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-----i~~-~Gi 411 (755)
++.+||.+|+++-+.++.+.+....... ++.+..++|+.+...+...+.. ..+|+|+|. .+. ..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~ 172 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRAC-----RLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKT 172 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhc-----CceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCC
Confidence 5679999999999999988888765432 3678889999998877665542 367999995 222 345
Q ss_pred cCCCeeEEE
Q 048746 412 TIDGIKYVI 420 (755)
Q Consensus 412 dip~v~~VI 420 (755)
++.++++||
T Consensus 173 ~~~~~~~lV 181 (242)
T 3fe2_A 173 NLRRTTYLV 181 (242)
T ss_dssp CCTTCCEEE
T ss_pred CcccccEEE
Confidence 778888877
No 400
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=73.02 E-value=1.6 Score=41.96 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=18.0
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
...+|+||+|||||+++-.+.+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999988765543
No 401
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=72.76 E-value=1.5 Score=44.22 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=18.9
Q ss_pred CeEEEEccCCCchhccHHHHHHHh
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
+.+++.||+||||||++-.+....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 459999999999998876665443
No 402
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=72.50 E-value=1.4 Score=44.98 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=17.3
Q ss_pred CCeEEEEccCCCchhccHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l 167 (755)
+..+.|+|++||||||++-.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999998765443
No 403
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=72.20 E-value=1.2 Score=47.24 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=20.7
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||.||||||++-.+.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred ECCCCEEEEECCCCChHHHHHHHHH
Confidence 3578899999999999998876553
No 404
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=72.03 E-value=1.6 Score=44.13 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=17.9
Q ss_pred eEEEEccCCCchhccHHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~ 169 (755)
++.++||+|+||||++-.+.-.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999988766543
No 405
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=71.93 E-value=1.2 Score=47.25 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=20.3
Q ss_pred HcCCeEEEEccCCCchhccHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l 167 (755)
..|..+.+.||.||||||++-.+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHH
Confidence 568899999999999998876553
No 406
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=71.82 E-value=1.4 Score=46.86 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=20.8
Q ss_pred HcCCeEEEEccCCCchhccHHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
..++.+++.||+||||||++-.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999988776653
No 407
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=71.80 E-value=1.9 Score=48.22 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=35.5
Q ss_pred ccchHHHHHHHHHhcCCCChHHHHHHHHH--------HHcCCeEEEEccCCCchhccHHHHHHH
Q 048746 114 SKEKSALEMLQEERKTLPIYPYRDELLQA--------VNEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 114 ~~~~~~~~~l~~~~~~lPl~~~Q~~~l~~--------i~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+++-..+..+...+...|.+-...++... +..+..++++|+.||||||++-.+.-.
T Consensus 329 ~isgt~ir~~Lr~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 329 TLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CCCHHHHHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcCCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHh
Confidence 44566677777777666532211222222 346789999999999999877655433
No 408
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=71.78 E-value=1.6 Score=41.33 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=17.4
Q ss_pred CeEEEEccCCCchhccHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l 167 (755)
..+.|+|++||||||+.-.+.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999998876554
No 409
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=71.74 E-value=1.3 Score=42.83 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=17.8
Q ss_pred CCeEEEEccCCCchhccHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l 167 (755)
+..+.+.|+.||||||++-.+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999998876553
No 410
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=71.71 E-value=1.3 Score=46.86 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=20.9
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||.||||||++-.+.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHh
Confidence 3578999999999999999876554
No 411
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=71.27 E-value=15 Score=34.93 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=55.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCc-----c-cccC
Q 048746 338 PGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNI-----A-ETSL 411 (755)
Q Consensus 338 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i-----~-~~Gi 411 (755)
..++||.+|++.-+.++++.+...... .+++.+..++|+.+...+...+. .+..+|+|+|.- + ...+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~v~~~~g~~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~ 154 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKY----MPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSL 154 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTT----STTCCEEEESCCSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSS
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhh----CCCceEEEEeCCCChHHHHHHHh---cCCCCEEEeCHHHHHHHHHhCCC
Confidence 348999999999999998888875432 12477888999998777665543 345689999952 1 2346
Q ss_pred cCCCeeEEE
Q 048746 412 TIDGIKYVI 420 (755)
Q Consensus 412 dip~v~~VI 420 (755)
++.++++||
T Consensus 155 ~~~~~~~lV 163 (220)
T 1t6n_A 155 NLKHIKHFI 163 (220)
T ss_dssp CCTTCCEEE
T ss_pred CcccCCEEE
Confidence 777888877
No 412
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=71.26 E-value=2.1 Score=41.48 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=20.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
.|..+++.|+.||||||++-.+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999999876543
No 413
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=71.15 E-value=0.99 Score=47.42 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=20.3
Q ss_pred HcCCeEEEEccCCCchhccHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l 167 (755)
..|..+.+.||.||||||++-.+.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCccHHHHHHHHH
Confidence 568899999999999998876553
No 414
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=70.96 E-value=2.6 Score=44.11 Aligned_cols=85 Identities=12% Similarity=0.032 Sum_probs=33.0
Q ss_pred CCCHHHHHhhcCCCChhhHHHHHhccccc-chHHHHhhhcccccccccccCCcchHHHHHHHHhc-cc--CCC-CCcHHH
Q 048746 537 ELTKVGRRMAEFPLDPMLSKMIVASDKDK-CSDEIITIAAMLSVGNSIFYRPKDKQVHADNARMN-FH--LGN-VGDHIA 611 (755)
Q Consensus 537 ~lT~lG~~~~~~pl~p~~~~~l~~~~~~~-c~~~~~~i~a~ls~~~~~f~~~~~~~~~~~~~~~~-f~--~~~-~~D~~~ 611 (755)
..|++|+++|+++|++..++.+.....-. ...+++.+.|.-++.+.+.+|..+.....+..... +. .+. ...|.-
T Consensus 14 ~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~~~~K 93 (339)
T 2q0z_X 14 APLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVK 93 (339)
T ss_dssp -----------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTCHHHH
T ss_pred ccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhcCCCCcchHHHHHHHHHhCCCccccCCCCCHHHH
Confidence 47999999999999999999998766543 45678888888888888888887766554443321 11 111 233544
Q ss_pred HHHHHHHHHH
Q 048746 612 LLRVYNSWRE 621 (755)
Q Consensus 612 ~l~~~~~~~~ 621 (755)
..-..++|..
T Consensus 94 ~~lLLqa~is 103 (339)
T 2q0z_X 94 TNLLLQAHLS 103 (339)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 4444566654
No 415
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=70.76 E-value=2.5 Score=46.32 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=18.2
Q ss_pred cCCeEEEEccCCCchhccHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l 167 (755)
...++++.||+|+|||+++-.+.
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la 222 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLA 222 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHH
Confidence 35689999999999997665443
No 416
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=70.62 E-value=1.6 Score=44.91 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=19.9
Q ss_pred HcCCeEEEEccCCCchhccHHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
..+..+.|+||+||||||++-.+.-
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456889999999999988766544
No 417
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=70.58 E-value=1.7 Score=42.10 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=20.7
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
..+..+++.|+.||||||++-.+...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 35778999999999999998766443
No 418
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=70.54 E-value=1.1 Score=50.70 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=20.0
Q ss_pred HHcCCeEEEEccCCCchhccHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQY 166 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~ 166 (755)
+..|+.+.++||+||||||++-.+
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l 387 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLI 387 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTT
T ss_pred ECCCCEEEEECCCCChHHHHHHHH
Confidence 356889999999999999887544
No 419
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=70.54 E-value=1.9 Score=38.81 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=18.0
Q ss_pred eEEEEccCCCchhccHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~ 168 (755)
.+++.|++|+|||+++-.++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999998877763
No 420
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=70.36 E-value=16 Score=35.92 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=54.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCc-----cc--c
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNI-----AE--T 409 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i-----~~--~ 409 (755)
...++||.+|++.-+..+++.+....... ++.+..++|+.+...+...+. +...|+|+|.- +. .
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~ 180 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSI-----GVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLENTK 180 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGG-----TCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHHST
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccC-----CeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCC
Confidence 34679999999999999998888765432 356788899988776655442 34689999952 22 3
Q ss_pred cCcCCCeeEEE
Q 048746 410 SLTIDGIKYVI 420 (755)
Q Consensus 410 Gidip~v~~VI 420 (755)
++++..+++||
T Consensus 181 ~~~l~~~~~lV 191 (249)
T 3ber_A 181 GFNLRALKYLV 191 (249)
T ss_dssp TCCCTTCCEEE
T ss_pred CcCccccCEEE
Confidence 56788888877
No 421
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=70.36 E-value=2.4 Score=41.70 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=20.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHh
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
....+.+.||+||||||+.-.+....
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999887665443
No 422
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=70.30 E-value=2.7 Score=43.75 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=18.8
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
...+++.||+|+|||+++-.+...
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHh
Confidence 456999999999999776655543
No 423
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=70.27 E-value=8.4 Score=37.53 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=46.6
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCC-----cccc-c
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATN-----IAET-S 410 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-----i~~~-G 410 (755)
.+.++||.+|+++-+..+++.+....... +..+..++|+.+...+. +....+...|+|+|. .+.+ .
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~---~~l~~~~~~Ilv~Tp~~l~~~l~~~~ 168 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYM-----GATCHACIGGTNVRNEM---QKLQAEAPHIVVGTPGRVFDMLNRRY 168 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTT-----TCCEEEECC----------------CCCSEEEECHHHHHHHHHTTS
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhc-----CceEEEEECCCchHHHH---HHHhcCCCCEEEECHHHHHHHHHhCC
Confidence 45689999999999999999988765321 35567778876544332 334456678999993 3333 3
Q ss_pred CcCCCeeEEE
Q 048746 411 LTIDGIKYVI 420 (755)
Q Consensus 411 idip~v~~VI 420 (755)
++...+++||
T Consensus 169 ~~~~~~~~lV 178 (237)
T 3bor_A 169 LSPKWIKMFV 178 (237)
T ss_dssp SCSTTCCEEE
T ss_pred cCcccCcEEE
Confidence 5677788776
No 424
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=70.15 E-value=2.5 Score=44.42 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=21.8
Q ss_pred HHHcCCeEEEEccCCCchhccHHHHH
Q 048746 142 AVNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 142 ~i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
....+..+.++||+|+||||++-.++
T Consensus 211 ~~~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 211 EALTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHHTTSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCCEEEEECCCCccHHHHHHHHh
Confidence 34578899999999999999886554
No 425
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=70.12 E-value=5.7 Score=42.26 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=18.7
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHh
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+-.+++.|++|+|||++ ...++..
T Consensus 159 ~~~~vli~Ge~GtGK~~l-Ar~ih~~ 183 (387)
T 1ny5_A 159 AECPVLITGESGVGKEVV-ARLIHKL 183 (387)
T ss_dssp CCSCEEEECSTTSSHHHH-HHHHHHH
T ss_pred CCCCeEEecCCCcCHHHH-HHHHHHh
Confidence 456789999999999964 4455544
No 426
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=70.04 E-value=2.1 Score=42.26 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=20.9
Q ss_pred HcCCeEEEEccCCCchhccHHHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
..+..+++.|+.||||||++-.+...
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999988766543
No 427
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=70.01 E-value=1.8 Score=42.39 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=18.6
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+..+..+++.|+.||||||++-.+...
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999998766443
No 428
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=70.00 E-value=2.3 Score=41.26 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.9
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHh
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+..+++.|+.||||||++-.+....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999988776544
No 429
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=69.93 E-value=2 Score=38.69 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=17.9
Q ss_pred eEEEEccCCCchhccHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~ 168 (755)
.+++.|++|+|||+++-.++.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999998877664
No 430
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=69.86 E-value=2.1 Score=45.42 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=18.4
Q ss_pred CCeEEEEccCCCchhccHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~ 168 (755)
...+++.||+|+|||+++-.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999977655443
No 431
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=69.80 E-value=6.7 Score=37.02 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=51.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCC-----ccc-cc
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATN-----IAE-TS 410 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-----i~~-~G 410 (755)
.+.++||.+|++.-+..+++.+..... .+.+..++|+.+...+...+. ....|+|+|. .+. ..
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~ 139 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAP-------HLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGV 139 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCT-------TSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhh-------cceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCC
Confidence 356899999999999999999888652 256778888887655444332 2367999995 222 34
Q ss_pred CcCCCeeEEE
Q 048746 411 LTIDGIKYVI 420 (755)
Q Consensus 411 idip~v~~VI 420 (755)
+++.++++||
T Consensus 140 ~~~~~~~~iV 149 (207)
T 2gxq_A 140 LDLSRVEVAV 149 (207)
T ss_dssp SCCTTCSEEE
T ss_pred cchhhceEEE
Confidence 5677788777
No 432
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=69.74 E-value=2 Score=38.90 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=18.0
Q ss_pred eEEEEccCCCchhccHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~ 168 (755)
.++++|++|+|||+++-.++.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999998877664
No 433
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=69.64 E-value=1.6 Score=48.75 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.5
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||+||||||++-+++
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 3468999999999999999888764
No 434
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=69.53 E-value=3.4 Score=45.14 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=18.9
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
++.+++.||+|+|||+++-.+...
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 368999999999999776555444
No 435
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=69.13 E-value=1.6 Score=49.44 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.3
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|+.+.++||+||||||++-.+.
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~ 390 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFT 390 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999999877654
No 436
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=68.97 E-value=1.4 Score=50.09 Aligned_cols=25 Identities=40% Similarity=0.563 Sum_probs=21.0
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|+.+.++||+||||||++-.++
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 4568999999999999999876554
No 437
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=68.94 E-value=3 Score=42.79 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=22.4
Q ss_pred HHHcCCeEEEEccCCCchhccHHHHH
Q 048746 142 AVNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 142 ~i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
.+..++.+.+.||+|+||||++-.++
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH
Confidence 34568899999999999999988776
No 438
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=68.74 E-value=1.2 Score=44.66 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=19.4
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+.+++.||+|+|||+++-.+....
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4569999999999998776665443
No 439
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=68.70 E-value=16 Score=34.79 Aligned_cols=74 Identities=12% Similarity=0.097 Sum_probs=46.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcc------ccc
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIA------ETS 410 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~------~~G 410 (755)
...++||.+|++.-+..+++.+...... .++.+..++|+.+..++...+. ..+|+|+|.-. ...
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~-----~~~iiv~Tp~~l~~~~~~~~ 150 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFH-----MDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRR 150 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-----SCCCEEEECC----------CT-----TCSEEEECHHHHHHHHHTTS
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcc-----cCceEEEEeCCcchHHHHhcCC-----CCCEEEECHHHHHHHHHhCC
Confidence 4568999999999999999988876532 2466788899887666554433 26799999521 345
Q ss_pred CcCCCeeEEE
Q 048746 411 LTIDGIKYVI 420 (755)
Q Consensus 411 idip~v~~VI 420 (755)
+++..+.+||
T Consensus 151 ~~~~~~~~iV 160 (224)
T 1qde_A 151 FRTDKIKMFI 160 (224)
T ss_dssp SCCTTCCEEE
T ss_pred cchhhCcEEE
Confidence 6677777776
No 440
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=68.68 E-value=2.1 Score=40.03 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.3
Q ss_pred CCeEEEEccCCCchhccHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~ 168 (755)
.-.++++|++|+|||+++-.++.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999988877654
No 441
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=68.59 E-value=2.1 Score=47.81 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=19.1
Q ss_pred cCCeEEEEccCCCchhccHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
+..+++|.|.||||||+++-.++.
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHH
T ss_pred hCCeeEEECCCCCCHHHHHHHHHH
Confidence 457899999999999966655544
No 442
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=68.54 E-value=0.99 Score=47.56 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=20.7
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.+.||.||||||++-.+.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHh
Confidence 3568899999999999998876553
No 443
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=68.45 E-value=1.6 Score=47.70 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=21.1
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|..+.|.||+||||||++-.++
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~ 159 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLC 159 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHH
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999998876554
No 444
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=68.38 E-value=2 Score=44.88 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=18.1
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
...+++||+|||||+++-.+..
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5778999999999988775543
No 445
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=68.38 E-value=2.2 Score=47.54 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=27.1
Q ss_pred HHcCCeEEEEccCCCchhccHHHHHHHhcccCCCccccC
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKVGCT 181 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 181 (755)
+..|..+++.||+||||||++-+++..... .+.+++++
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~G~~vi~~ 315 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACA-NKERAILF 315 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHT-TTCCEEEE
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-CCCCEEEE
Confidence 456789999999999999888877654322 23345444
No 446
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=68.18 E-value=1.7 Score=46.83 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=20.2
Q ss_pred HHcCCe--EEEEccCCCchhccHHHHH
Q 048746 143 VNEYQV--LVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~--vii~apTGsGKT~~ip~~l 167 (755)
+..|.. +.++||+|+||||++-.++
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~ 63 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHH
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHh
Confidence 457888 9999999999999886654
No 447
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=68.09 E-value=1.3 Score=50.11 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=20.5
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|+.+.++||+||||||++-.++
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3568899999999999998875443
No 448
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=67.90 E-value=2.3 Score=38.51 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=18.0
Q ss_pred eEEEEccCCCchhccHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~ 168 (755)
.+++.|++|+|||+++-.++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999998877764
No 449
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=67.90 E-value=2.3 Score=39.12 Aligned_cols=22 Identities=32% Similarity=0.753 Sum_probs=18.6
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
-.++++|++|+|||+++-.++.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999998877764
No 450
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=67.90 E-value=2.3 Score=40.30 Aligned_cols=21 Identities=24% Similarity=0.716 Sum_probs=17.7
Q ss_pred eEEEEccCCCchhccHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~ 168 (755)
.+++.|+.|+||||++-.++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 578999999999998876653
No 451
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=67.62 E-value=2.2 Score=43.50 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=18.1
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
..++++|++||||||++-.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999998766554
No 452
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=67.61 E-value=2.3 Score=38.52 Aligned_cols=21 Identities=19% Similarity=0.702 Sum_probs=18.0
Q ss_pred eEEEEccCCCchhccHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~ 168 (755)
.++++|++|+|||+++-.++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999998877763
No 453
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=67.56 E-value=2.4 Score=38.49 Aligned_cols=22 Identities=23% Similarity=0.637 Sum_probs=18.5
Q ss_pred eEEEEccCCCchhccHHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~ 169 (755)
.++++|++|+|||+++-.++..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999988777543
No 454
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=67.45 E-value=2.3 Score=40.00 Aligned_cols=21 Identities=24% Similarity=0.716 Sum_probs=17.9
Q ss_pred eEEEEccCCCchhccHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~ 168 (755)
.++++|+.|+||||++-.++-
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999998876653
No 455
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=67.44 E-value=2.4 Score=38.21 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=17.8
Q ss_pred eEEEEccCCCchhccHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~ 168 (755)
.++++|++|+|||+++-.++.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999988776654
No 456
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=67.42 E-value=2.4 Score=38.24 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=18.0
Q ss_pred eEEEEccCCCchhccHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~ 168 (755)
.+++.|++|+|||+++-.++.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999998877664
No 457
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=67.42 E-value=9.3 Score=37.03 Aligned_cols=74 Identities=11% Similarity=0.134 Sum_probs=51.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCc-----ccc--
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNI-----AET-- 409 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i-----~~~-- 409 (755)
.+.++||.+|++.-+...++.+...+.. .++.+..+||+.+...+...+. ..+|+|+|.- +..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~-----~~~iiv~Tp~~l~~~l~~~~ 165 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKN-----HDFSAGLIIGGKDLKHEAERIN-----NINILVCTPGRLLQHMDETV 165 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTT-----SSCCEEEECCC--CHHHHHHHT-----TCSEEEECHHHHHHHHHHCS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCC-----CCeeEEEEECCCCHHHHHHhCC-----CCCEEEECHHHHHHHHHhcC
Confidence 3568999999999999999988876532 2367788899987666555542 4689999952 122
Q ss_pred cCcCCCeeEEE
Q 048746 410 SLTIDGIKYVI 420 (755)
Q Consensus 410 Gidip~v~~VI 420 (755)
.++..++++||
T Consensus 166 ~~~~~~~~~lV 176 (236)
T 2pl3_A 166 SFHATDLQMLV 176 (236)
T ss_dssp SCCCTTCCEEE
T ss_pred CcccccccEEE
Confidence 36677887777
No 458
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=67.23 E-value=2.3 Score=39.76 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=18.7
Q ss_pred CCeEEEEccCCCchhccHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l 167 (755)
...++++|++|+|||+++-.++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3579999999999998887665
No 459
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=67.13 E-value=2.4 Score=39.59 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=18.6
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
..+++.|++|+|||+++-.++.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999998877653
No 460
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=66.97 E-value=2.6 Score=43.68 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=18.4
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
...+++||+|||||+++-.+..
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 4899999999999988776553
No 461
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=66.87 E-value=1.5 Score=49.61 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.0
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|+.+.++||+||||||++-.+.
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~ 390 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLIT 390 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3568899999999999999876654
No 462
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=66.80 E-value=2.7 Score=40.17 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=17.3
Q ss_pred eEEEEccCCCchhccHHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~ 169 (755)
..+++|+.|||||+.+-..+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6789999999999776555444
No 463
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=66.57 E-value=2.2 Score=44.59 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=20.9
Q ss_pred HcCCeEEEEccCCCchhccHHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
..+..+.++|++||||||++-.++-
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999998876653
No 464
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=66.50 E-value=2.4 Score=40.32 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=18.2
Q ss_pred CCeEEEEccCCCchhccHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~ 168 (755)
+..+.++|+.||||||+.-.+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999988766544
No 465
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=66.49 E-value=1.9 Score=45.61 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=22.1
Q ss_pred HHc--CCeEEEEccCCCchhccHHHHHHH
Q 048746 143 VNE--YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 143 i~~--~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+.. ++.+.|+||+||||||++-.+.-.
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 566 788999999999999988766543
No 466
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=66.34 E-value=3 Score=42.71 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=21.3
Q ss_pred HHHcCCeEEEEccCCCchhccHHHHH
Q 048746 142 AVNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 142 ~i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
.+..+..+.+.||+|+||||++-.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhc
Confidence 34578899999999999998876553
No 467
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=66.30 E-value=2.6 Score=38.25 Aligned_cols=20 Identities=20% Similarity=0.577 Sum_probs=17.4
Q ss_pred eEEEEccCCCchhccHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l 167 (755)
.++++|++|+|||+++-.++
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998887665
No 468
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=66.17 E-value=2.8 Score=40.34 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=21.6
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHh
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.-..++++|++|+||||++-.++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34689999999999999988877654
No 469
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=66.11 E-value=2.6 Score=38.60 Aligned_cols=21 Identities=24% Similarity=0.718 Sum_probs=18.1
Q ss_pred eEEEEccCCCchhccHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~ 168 (755)
.++++|++|+|||+++-.++.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999998877753
No 470
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=66.06 E-value=1.6 Score=49.50 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=20.9
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|+.+.++||+||||||++-.+.
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~ 391 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLL 391 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3568899999999999999876654
No 471
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=65.77 E-value=2.7 Score=37.95 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=17.8
Q ss_pred eEEEEccCCCchhccHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~ 168 (755)
.++++|++|+|||+++-.++.
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999988777653
No 472
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=65.65 E-value=2.7 Score=38.31 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=17.8
Q ss_pred CeEEEEccCCCchhccHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l 167 (755)
..+++.|++|+|||+++-.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 358999999999998887765
No 473
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=65.64 E-value=2.6 Score=40.36 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=19.6
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
...++++|++|+|||+++-.++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999888776543
No 474
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=65.40 E-value=2.8 Score=38.08 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=18.4
Q ss_pred eEEEEccCCCchhccHHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~ 169 (755)
.++++|++|+|||+++-.++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999988776643
No 475
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=65.20 E-value=8.2 Score=43.61 Aligned_cols=59 Identities=17% Similarity=0.081 Sum_probs=50.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCC--CCCCcEEEEeCC
Q 048746 338 PGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPT--PEGARKVVLATN 405 (755)
Q Consensus 338 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f--~~g~~~vlvaT~ 405 (755)
.+.+||.+|++.-+....+.|...+ +.+..++|+++..++..++... ..+..+||++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g---------i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG---------ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT---------CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC---------CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 5789999999999999998888753 6788899999999888877655 567889999997
No 476
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=65.17 E-value=14 Score=36.29 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=53.0
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcc------cccC
Q 048746 338 PGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIA------ETSL 411 (755)
Q Consensus 338 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~------~~Gi 411 (755)
..++||.+|+++-+..+++.+...... .++.+..++|+.+...+...+. ....|+|+|.-. ...+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~ 170 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLN-----TPLRSCVVYGGADTHSQIREVQ----MGCHLLVATPGRLVDFIEKNKI 170 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTT-----SSCCEEEECSSSCSHHHHHHHS----SCCSEEEECHHHHHHHHHTTSB
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcc-----CCceEEEEECCCCHHHHHHHhC----CCCCEEEECHHHHHHHHHcCCC
Confidence 468999999999999999988876532 2356777888887666555543 246899999621 2235
Q ss_pred cCCCeeEEE
Q 048746 412 TIDGIKYVI 420 (755)
Q Consensus 412 dip~v~~VI 420 (755)
++..+++||
T Consensus 171 ~~~~~~~lV 179 (253)
T 1wrb_A 171 SLEFCKYIV 179 (253)
T ss_dssp CCTTCCEEE
T ss_pred ChhhCCEEE
Confidence 677777776
No 477
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=65.16 E-value=3.3 Score=39.28 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=18.5
Q ss_pred eEEEEccCCCchhccHHHHHHHh
Q 048746 148 VLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+.+.|+.||||||+.-.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68899999999998877665433
No 478
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=65.10 E-value=2.1 Score=42.87 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=18.9
Q ss_pred HcCCeEEEEccCCCchhccHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l 167 (755)
..+..+++.|+.||||||++-.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999876543
No 479
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=65.02 E-value=3 Score=45.33 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=19.4
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+.+++.||+|+|||+++-.+..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999777655544
No 480
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=64.98 E-value=2.6 Score=38.84 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=18.6
Q ss_pred CCeEEEEccCCCchhccHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l 167 (755)
+..++++|++|+|||+++-.+.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4568999999999998887665
No 481
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=64.76 E-value=3.7 Score=40.22 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=20.3
Q ss_pred cCCeEEEEccCCCchhccHHHHHHHh
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
.+..+.++|+.||||||+.-.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999998876655433
No 482
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=64.55 E-value=9.1 Score=36.89 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=48.9
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCC------ccccc
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATN------IAETS 410 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~------i~~~G 410 (755)
.+.++||.+|+++-+.++++.+..... .++.+..++|+.+...+...+. ...+|+|+|. +....
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~Tp~~l~~~~~~~~ 162 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSY------KGLKSICIYGGRNRNGQIEDIS----KGVDIIIATPGRLNDLQMNNS 162 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCC------TTCCEEEECC------CHHHHH----SCCSEEEECHHHHHHHHHTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcc------cCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCC
Confidence 457899999999999999998887531 2467788888887665544432 2368999995 22335
Q ss_pred CcCCCeeEEE
Q 048746 411 LTIDGIKYVI 420 (755)
Q Consensus 411 idip~v~~VI 420 (755)
+++.++++||
T Consensus 163 ~~~~~~~~lV 172 (228)
T 3iuy_A 163 VNLRSITYLV 172 (228)
T ss_dssp CCCTTCCEEE
T ss_pred cCcccceEEE
Confidence 6778888877
No 483
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=64.53 E-value=2.9 Score=37.77 Aligned_cols=21 Identities=29% Similarity=0.675 Sum_probs=17.9
Q ss_pred eEEEEccCCCchhccHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~ 168 (755)
.++++|++|+|||+++-.++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999998877654
No 484
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=64.52 E-value=3.2 Score=38.02 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=19.4
Q ss_pred CCeEEEEccCCCchhccHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~ 168 (755)
...++++|++|+|||+++-.++.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999998877653
No 485
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=64.51 E-value=18 Score=34.77 Aligned_cols=75 Identities=11% Similarity=0.088 Sum_probs=54.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCcEEEEeCCcc------ccc
Q 048746 337 SPGDILVFLTGQEEIETADEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIA------ETS 410 (755)
Q Consensus 337 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~i~------~~G 410 (755)
...++||.+|+++-+.+.++.+...... ..++.+..++|+.+..++...++ ...|+|+|.-. ...
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~-----~~~Iiv~Tp~~l~~~~~~~~ 161 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIK----MEGLECHVFIGGTPLSQDKTRLK-----KCHIAVGSPGRIKQLIELDY 161 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT----STTCCEEEECTTSCHHHHHHHTT-----SCSEEEECHHHHHHHHHTTS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcc----cCCceEEEEeCCCCHHHHHHhcc-----CCCEEEECHHHHHHHHhcCC
Confidence 4578999999999999999988876432 12467888999999887776653 36899999621 234
Q ss_pred CcCCCeeEEE
Q 048746 411 LTIDGIKYVI 420 (755)
Q Consensus 411 idip~v~~VI 420 (755)
++..++++||
T Consensus 162 ~~~~~~~~lV 171 (230)
T 2oxc_A 162 LNPGSIRLFI 171 (230)
T ss_dssp SCGGGCCEEE
T ss_pred cccccCCEEE
Confidence 5566666665
No 486
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=64.47 E-value=2 Score=53.69 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=20.9
Q ss_pred HHcCCeEEEEccCCCchhccHHHHH
Q 048746 143 VNEYQVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 143 i~~~~~vii~apTGsGKT~~ip~~l 167 (755)
+..|+.+-++|+|||||||++-.++
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHh
Confidence 3568999999999999999876553
No 487
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=64.42 E-value=2.9 Score=38.23 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=18.5
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
-.++++|++|+|||+++-.++.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999998877764
No 488
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=64.24 E-value=3.4 Score=40.97 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=17.7
Q ss_pred CeEEEEccCCCchhccHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~ 168 (755)
..+.|.|+.||||||+.-.+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999988765544
No 489
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=64.12 E-value=2.6 Score=39.09 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=19.4
Q ss_pred HcCCeEEEEccCCCchhccHHHHHH
Q 048746 144 NEYQVLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 144 ~~~~~vii~apTGsGKT~~ip~~l~ 168 (755)
...-.++++|++|+|||+++-.++.
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhc
Confidence 3445799999999999998877653
No 490
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=64.08 E-value=2.9 Score=40.98 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=18.1
Q ss_pred CeEEEEccCCCchhccHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l 167 (755)
-.++++|++|+|||+++-.++
T Consensus 30 ~~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHc
Confidence 468999999999998887665
No 491
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=64.06 E-value=1.3 Score=43.44 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=16.6
Q ss_pred EEEccCCCchhccHHHHHHHh
Q 048746 150 VIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 150 ii~apTGsGKT~~ip~~l~~~ 170 (755)
.|+||+||||||++-.+....
T Consensus 31 ~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHSCCSHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhccc
Confidence 577999999999887665443
No 492
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=64.00 E-value=3.3 Score=41.06 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=20.2
Q ss_pred CCeEEEEccCCCchhccHHHHHHHh
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHEA 170 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~~ 170 (755)
...+++.|..|+||||++-.+....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3468899999999998888776554
No 493
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=63.97 E-value=3 Score=38.70 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=18.1
Q ss_pred CeEEEEccCCCchhccHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l 167 (755)
..++++|++|+|||+++-.++
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999887765
No 494
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=63.96 E-value=3.2 Score=46.44 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=19.9
Q ss_pred cCCeEEEEccCCCchhccHHHHHHH
Q 048746 145 EYQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 145 ~~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
.+..+++.||+|+|||+++-.+...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4779999999999999876655433
No 495
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=63.91 E-value=3.1 Score=37.75 Aligned_cols=20 Identities=35% Similarity=0.596 Sum_probs=17.0
Q ss_pred eEEEEccCCCchhccHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l 167 (755)
.++++|++|+|||+++-.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998876664
No 496
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=63.86 E-value=3 Score=40.94 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=19.1
Q ss_pred CCeEEEEccCCCchhccHHHHHHH
Q 048746 146 YQVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 146 ~~~vii~apTGsGKT~~ip~~l~~ 169 (755)
+..+++.|+.||||||++-.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 456899999999999988765543
No 497
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=63.58 E-value=3 Score=38.66 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=17.5
Q ss_pred eEEEEccCCCchhccHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l 167 (755)
.++++|++|+|||+++-.++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999887765
No 498
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=63.47 E-value=3.1 Score=38.13 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=18.9
Q ss_pred CeEEEEccCCCchhccHHHHHHH
Q 048746 147 QVLVIVGETGSGKTTQIPQYLHE 169 (755)
Q Consensus 147 ~~vii~apTGsGKT~~ip~~l~~ 169 (755)
-.++++|++|+|||+++-.++..
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999988776643
No 499
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=63.21 E-value=3.2 Score=37.84 Aligned_cols=20 Identities=30% Similarity=0.615 Sum_probs=17.1
Q ss_pred eEEEEccCCCchhccHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYL 167 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l 167 (755)
.++++|++|+|||+++-.++
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 58999999999998876654
No 500
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=62.82 E-value=5.4 Score=39.93 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=16.7
Q ss_pred eEEEEccCCCchhccHHHHHH
Q 048746 148 VLVIVGETGSGKTTQIPQYLH 168 (755)
Q Consensus 148 ~vii~apTGsGKT~~ip~~l~ 168 (755)
.+++.||+|+|||+++-.++.
T Consensus 106 ~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999966654443
Done!