BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048747
(1319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine
Deaminase From Streptococcus Pyogenes
Length = 179
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 100/171 (58%), Gaps = 19/171 (11%)
Query: 1120 FMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVL 1179
FM+EAL E++K+ E+P+G V+V+ G+II RG N EE + HAEM+ I A+
Sbjct: 19 FMQEALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 78
Query: 1180 RTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDG 1239
WRL D TL+VT+EPC MC+GAI AR+ +++GA N+ G S ++ D
Sbjct: 79 GNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTD------- 131
Query: 1240 SEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRRRKKEKIADDL 1290
+ ++ + RG+LAA+CA+IM FF+ + R+++KIA L
Sbjct: 132 -----------ERLNHRVQVERGLLAADCANIMQTFFR-QGRERKKIAKHL 170
>pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Escherichia Coli
pdb|1Z3A|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Escherichia Coli
Length = 168
Score = 119 bits (297), Expect = 2e-26, Method: Composition-based stats.
Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 20/166 (12%)
Query: 1118 DMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASN 1177
+ +MR AL AK+A D EVPVGAVLV + ++I G N D TAHAE++ +R
Sbjct: 10 EYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGL 69
Query: 1178 VLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKR 1237
V++ +RL DATLYVTLEPC MCAGA++ +R+ +V+GA + GA GS + +
Sbjct: 70 VMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLH------ 123
Query: 1238 DGSEPSDKPAGPVHP-FHPKMTIRRGVLAAECADIMHQFFQLRRRK 1282
HP + ++ I G+LA ECA ++ FF++RR++
Sbjct: 124 -------------HPGMNHRVEITEGILADECAALLSDFFRMRRQE 156
>pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|B Chain B, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|C Chain C, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|D Chain D, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
Length = 159
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 93/168 (55%), Gaps = 19/168 (11%)
Query: 1117 DDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAAS 1176
D FM A+ EAKKAA EVP+GA++ + ++IAR NL E L+ TAHAE I I A+
Sbjct: 7 DIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAA 66
Query: 1177 NVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEK 1236
VL +WRL TLYVTLEPC MCAG I+ +R+ +V+GA + G GS + L
Sbjct: 67 KVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSN-- 124
Query: 1237 RDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQ-LRRRKK 1283
F+ + + +GVL C+ ++ FF+ LR KK
Sbjct: 125 ----------------FNHRAIVDKGVLKEACSTLLTTFFKNLRANKK 156
>pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase From
Salmonella Enterica
Length = 183
Score = 118 bits (295), Expect = 2e-26, Method: Composition-based stats.
Identities = 67/166 (40%), Positives = 96/166 (57%), Gaps = 20/166 (12%)
Query: 1118 DMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASN 1177
+ +MR AL AK+A D EVPVGAVLV + ++I G N D TAHAE++ +R
Sbjct: 20 EYWMRHALTLAKRAWDEREVPVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGL 79
Query: 1178 VLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKR 1237
VL+ +RL D TLYVTLEPC MCAGA++ +R+ +V+GA + GA GS + +
Sbjct: 80 VLQNYRLLDTTLYVTLEPCVMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLH------ 133
Query: 1238 DGSEPSDKPAGPVHP-FHPKMTIRRGVLAAECADIMHQFFQLRRRK 1282
HP + ++ I GVL ECA ++ FF++RR++
Sbjct: 134 -------------HPGMNHRVEIIEGVLRDECATLLSDFFRMRRQE 166
>pdb|2A8N|A Chain A, Biochemical And Structural Studies Of A-To-I Editing By
Trna:a34 Deaminases At The Wobble Position Of Transfer
Rna
pdb|2A8N|B Chain B, Biochemical And Structural Studies Of A-To-I Editing By
Trna:a34 Deaminases At The Wobble Position Of Transfer
Rna
Length = 144
Score = 105 bits (262), Expect = 2e-22, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 85/156 (54%), Gaps = 18/156 (11%)
Query: 1120 FMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVL 1179
FM AL+EA+ A + EVP+GAVLV G++IAR N EL D TAHAE+ IR A L
Sbjct: 7 FMELALVEARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEAL 66
Query: 1180 RTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDG 1239
RL A LYVTLEPC MCA AI AR+ L +GA + GA S VR F
Sbjct: 67 GQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFF--------- 117
Query: 1240 SEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQF 1275
S+P+ H + G+ +E A+I+ QF
Sbjct: 118 SQPT---------CHHAPDVYSGLAESESAEILRQF 144
>pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|C Chain C, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|D Chain D, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
Length = 171
Score = 97.4 bits (241), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 72/105 (68%)
Query: 1118 DMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASN 1177
+ F++ AL EAK+A + EVPVGA++V+ G+II++ N VEEL+D TAHAEM+ I+ A
Sbjct: 24 EYFLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACR 83
Query: 1178 VLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGA 1222
L T L LYVTLEPC MC+ A++ +R+ +++ A +K G
Sbjct: 84 RLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGG 128
>pdb|1WKQ|A Chain A, Crystal Structure Of Bacillus Subtilis Guanine Deaminase.
The First Domain-Swapped Structure In The Cytidine
Deaminase Superfamily
pdb|1WKQ|B Chain B, Crystal Structure Of Bacillus Subtilis Guanine Deaminase.
The First Domain-Swapped Structure In The Cytidine
Deaminase Superfamily
Length = 164
Score = 78.6 bits (192), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/78 (50%), Positives = 47/78 (60%)
Query: 1138 PVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCP 1197
P GAV+V+ G IIA G N V D TAHAE+ IR A VL ++L D LY + EPCP
Sbjct: 33 PFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCP 92
Query: 1198 MCAGAILQARVSTLVWGA 1215
MC GAI AR + + A
Sbjct: 93 MCLGAIYWARPKAVFYAA 110
>pdb|1TIY|A Chain A, X-Ray Structure Of Guanine Deaminase From Bacillus Subtilis
Northeast Structural Genomics Consortium Target Sr160
pdb|1TIY|B Chain B, X-Ray Structure Of Guanine Deaminase From Bacillus Subtilis
Northeast Structural Genomics Consortium Target Sr160
Length = 164
Score = 75.5 bits (184), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/78 (48%), Positives = 46/78 (58%)
Query: 1138 PVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCP 1197
P GAV+V+ G IIA G N V D TAHAE+ IR A VL ++L D LY + EPCP
Sbjct: 25 PFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCP 84
Query: 1198 MCAGAILQARVSTLVWGA 1215
C GAI AR + + A
Sbjct: 85 XCLGAIYWARPKAVFYAA 102
>pdb|3DH1|A Chain A, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
pdb|3DH1|B Chain B, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
pdb|3DH1|C Chain C, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
pdb|3DH1|D Chain D, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
Length = 189
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 1120 FMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVL 1179
+M EA+ AK+A + EVPVG ++V + +++ +G N V + +++T HAEM+ I +
Sbjct: 29 WMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWC 88
Query: 1180 R------TWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRL---- 1229
R + LYVT+EPC MCA A+ ++ +V+G N+ G GS + +
Sbjct: 89 RQSGKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASAD 148
Query: 1230 FPDGG 1234
P+ G
Sbjct: 149 LPNTG 153
>pdb|1YSB|A Chain A, Yeast Cytosine Deaminase Triple Mutant
pdb|1YSB|B Chain B, Yeast Cytosine Deaminase Triple Mutant
Length = 161
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 26/129 (20%)
Query: 1114 QKIDDMFMREALLEAKKAADTWEVPVGAVLVQH--GKIIARGCNLVEELRDSTAHAEMI- 1170
QK D+ EALL K+ VP+G L+ + G ++ RG N+ + +T H E+
Sbjct: 15 QKGMDIAYEEALLGYKEGG----VPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIST 70
Query: 1171 ---CIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWV 1227
C R V + D TLY TL PC MC GAI +++G P ++G + +
Sbjct: 71 LENCGRLEGKVYK-----DTTLYTTLSPCDMCTGAI-------IMYGIPRCVIGENVN-- 116
Query: 1228 RLFPDGGEK 1236
F GEK
Sbjct: 117 --FKSKGEK 123
>pdb|2O3K|A Chain A, Yeast Cytosine Deaminase D92e Triple Mutant Bound To
Transition State Analogue Hpy
pdb|2O3K|B Chain B, Yeast Cytosine Deaminase D92e Triple Mutant Bound To
Transition State Analogue Hpy
Length = 161
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 26/129 (20%)
Query: 1114 QKIDDMFMREALLEAKKAADTWEVPVGAVLVQH--GKIIARGCNLVEELRDSTAHAEMI- 1170
QK D+ EALL K+ VP+G L+ + G ++ RG N+ + +T H E+
Sbjct: 15 QKGMDIAYEEALLGYKEGG----VPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIST 70
Query: 1171 ---CIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWV 1227
C R V + D TLY TL PC MC GAI +++G P ++G + +
Sbjct: 71 LENCGRLEGKVYK-----DTTLYTTLSPCEMCTGAI-------IMYGIPRCVIGENVN-- 116
Query: 1228 RLFPDGGEK 1236
F GEK
Sbjct: 117 --FKSKGEK 123
>pdb|1YSD|A Chain A, Yeast Cytosine Deaminase Double Mutant
pdb|1YSD|B Chain B, Yeast Cytosine Deaminase Double Mutant
Length = 161
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 26/129 (20%)
Query: 1114 QKIDDMFMREALLEAKKAADTWEVPVGAVLVQH--GKIIARGCNLVEELRDSTAHAEMI- 1170
QK D+ EALL K+ VP+G L+ + G ++ RG N+ + +T H E+
Sbjct: 15 QKGMDIAYEEALLGYKEGG----VPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIST 70
Query: 1171 ---CIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWV 1227
C R V + D TLY TL PC MC GAI +++G P ++G + +
Sbjct: 71 LENCGRLEGKVYK-----DTTLYTTLSPCDMCTGAI-------IMYGIPRCVVGENVN-- 116
Query: 1228 RLFPDGGEK 1236
F GEK
Sbjct: 117 --FKSKGEK 123
>pdb|1UAQ|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase
pdb|1UAQ|B Chain B, The Crystal Structure Of Yeast Cytosine Deaminase
Length = 158
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 26/129 (20%)
Query: 1114 QKIDDMFMREALLEAKKAADTWEVPVGAVLVQH--GKIIARGCNLVEELRDSTAHAEMI- 1170
QK D+ EA L K+ VP+G L+ + G ++ RG N+ + +T H E+
Sbjct: 12 QKGMDIAYEEAALGYKEGG----VPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIST 67
Query: 1171 ---CIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWV 1227
C R V + D TLY TL PC MC GAI +++G P ++G + +
Sbjct: 68 LENCGRLEGKVYK-----DTTLYTTLSPCDMCTGAI-------IMYGIPRCVVGENVN-- 113
Query: 1228 RLFPDGGEK 1236
F GEK
Sbjct: 114 --FKSKGEK 120
>pdb|1P6O|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase Bound To
4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms.
pdb|1P6O|B Chain B, The Crystal Structure Of Yeast Cytosine Deaminase Bound To
4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms.
pdb|1RB7|A Chain A, Yeast Cytosine Deaminase Crystal Form P212121 With Sodium
Acetate.
pdb|1RB7|B Chain B, Yeast Cytosine Deaminase Crystal Form P212121 With Sodium
Acetate
Length = 161
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 26/129 (20%)
Query: 1114 QKIDDMFMREALLEAKKAADTWEVPVGAVLVQH--GKIIARGCNLVEELRDSTAHAEMI- 1170
QK D+ EA L K+ VP+G L+ + G ++ RG N+ + +T H E+
Sbjct: 15 QKGMDIAYEEAALGYKEGG----VPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIST 70
Query: 1171 ---CIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWV 1227
C R V + D TLY TL PC MC GAI +++G P ++G + +
Sbjct: 71 LENCGRLEGKVYK-----DTTLYTTLSPCDMCTGAI-------IMYGIPRCVVGENVN-- 116
Query: 1228 RLFPDGGEK 1236
F GEK
Sbjct: 117 --FKSKGEK 123
>pdb|2G84|A Chain A, Cytidine And Deoxycytidylate Deaminase Zinc-Binding Region
From Nitrosomonas Europaea.
pdb|2G84|B Chain B, Cytidine And Deoxycytidylate Deaminase Zinc-Binding Region
From Nitrosomonas Europaea
Length = 197
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 1125 LLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRL 1184
L+ A AAD G +IA G N V R S AHAE++ + A L T L
Sbjct: 38 LVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDL 97
Query: 1185 -ADA----TLYVTLEPCPMCAGAILQARVSTLVWGA 1215
AD L + EPC MC GA++ + V +LV A
Sbjct: 98 SADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAA 133
>pdb|2HXV|A Chain A, Crystal Structure Of A
Diaminohydroxyphosphoribosylaminopyrimidine Deaminase
5-Amino-6-(5-Phosphoribosylamino)uracil Reductase
(Tm1828) From Thermotoga Maritima At 1.80 A Resolution
Length = 360
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
Query: 1138 PVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPC- 1196
PVGAV+V+ G+IIA G + HAE I +A + L ATL VTLEPC
Sbjct: 37 PVGAVVVKDGRIIAEGFHPYF----GGPHAERXAIESARK--KGEDLRGATLIVTLEPCD 90
Query: 1197 -----PMCAGAILQARVSTLVWGA--PNKLLG 1221
P C I+++ + T+V G PN + G
Sbjct: 91 HHGKTPPCTDLIIESGIKTVVIGTRDPNPVSG 122
>pdb|1OX7|A Chain A, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme:
Inorganic Zinc Bound
pdb|1OX7|B Chain B, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme:
Inorganic Zinc Bound
Length = 161
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 26/129 (20%)
Query: 1114 QKIDDMFMREALLEAKKAADTWEVPVGAVLVQH--GKIIARGCNLVEELRDSTAHAEMI- 1170
QK D+ EA L K+ VP+G L+ + G ++ RG N + +T H E+
Sbjct: 15 QKGXDIAYEEAALGYKEGG----VPIGGCLINNKDGSVLGRGHNXRFQKGSATLHGEIST 70
Query: 1171 ---CIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWV 1227
C R V + D TLY TL PC C GAI+ +G P ++G + +
Sbjct: 71 LENCGRLEGKVYK-----DTTLYTTLSPCDXCTGAIIX-------YGIPRCVVGENVN-- 116
Query: 1228 RLFPDGGEK 1236
F GEK
Sbjct: 117 --FKSKGEK 123
>pdb|2B3Z|A Chain A, Crystal Structure Of A Bifunctional Deaminase And Reductase
Involved In Riboflavin Biosynthesis
pdb|2B3Z|B Chain B, Crystal Structure Of A Bifunctional Deaminase And Reductase
Involved In Riboflavin Biosynthesis
pdb|2B3Z|C Chain C, Crystal Structure Of A Bifunctional Deaminase And Reductase
Involved In Riboflavin Biosynthesis
pdb|2B3Z|D Chain D, Crystal Structure Of A Bifunctional Deaminase And Reductase
Involved In Riboflavin Biosynthesis
pdb|2D5N|A Chain A, Crystal Structure Of A Bifunctional Deaminase And Reductase
Involved In Riboflavin Biosynthesis
pdb|2D5N|B Chain B, Crystal Structure Of A Bifunctional Deaminase And Reductase
Involved In Riboflavin Biosynthesis
pdb|2D5N|C Chain C, Crystal Structure Of A Bifunctional Deaminase And Reductase
Involved In Riboflavin Biosynthesis
pdb|2D5N|D Chain D, Crystal Structure Of A Bifunctional Deaminase And Reductase
Involved In Riboflavin Biosynthesis
pdb|3EX8|A Chain A, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|B Chain B, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|C Chain C, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|D Chain D, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|4G3M|A Chain A, Complex Structure Of Bacillus Subtilis Ribg: The Deamination
Process In Riboflavin Biosynthesis
pdb|4G3M|B Chain B, Complex Structure Of Bacillus Subtilis Ribg: The Deamination
Process In Riboflavin Biosynthesis
pdb|4G3M|C Chain C, Complex Structure Of Bacillus Subtilis Ribg: The Deamination
Process In Riboflavin Biosynthesis
pdb|4G3M|D Chain D, Complex Structure Of Bacillus Subtilis Ribg: The Deamination
Process In Riboflavin Biosynthesis
Length = 373
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 22/135 (16%)
Query: 1116 IDDMFMREALLEAKKA-ADTWEVP-VGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIR 1173
+++ +M+ AL AK+ T P VGAV+V+ G+I+ G + L+ AHAE+ I
Sbjct: 13 MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAH----LKYGEAHAEVHAIH 68
Query: 1174 AASNVLRTWRLADATLYVTLEPC------PMCAGAILQARVSTLVWGA--PNKLLGADGS 1225
A A +YVTLEPC P CA I+ + + + PN L+ G
Sbjct: 69 MAGA-----HAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRG- 122
Query: 1226 WVRLFPDGG-EKRDG 1239
+ + + G E R+G
Sbjct: 123 -ISMMKEAGIEVREG 136
>pdb|2G6V|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli
pdb|2G6V|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli
pdb|2OBC|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
pdb|2OBC|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
Length = 402
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 15/80 (18%)
Query: 1139 VGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPC-- 1196
VG V+V+ G+I+ G + R HAE+ +R A + AT YVTLEPC
Sbjct: 54 VGCVIVKDGEIVGEGYHQ----RAGEPHAEVHALRXAGE-----KAKGATAYVTLEPCSH 104
Query: 1197 ----PMCAGAILQARVSTLV 1212
P C A++ A V+ +V
Sbjct: 105 HGRTPPCCDALIAAGVARVV 124
>pdb|2O7P|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
pdb|2O7P|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
Length = 380
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 15/80 (18%)
Query: 1139 VGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPC-- 1196
VG V+V+ G+I+ G + R HAE+ +R A + AT YVTLEPC
Sbjct: 32 VGCVIVKDGEIVGEGYHQ----RAGEPHAEVHALRXAGE-----KAKGATAYVTLEPCSH 82
Query: 1197 ----PMCAGAILQARVSTLV 1212
P C A++ A V+ +V
Sbjct: 83 HGRTPPCCDALIAAGVARVV 102
>pdb|2HVV|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVV|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|C Chain C, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
Length = 184
Score = 39.3 bits (90), Expect = 0.015, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 20/118 (16%)
Query: 1118 DMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCN-----------LVEELRDS--- 1163
D FM A L +K++ VGAVLV++ +IIA G N + E+ D
Sbjct: 43 DYFMANAELISKRSTCN-RAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCI 101
Query: 1164 -TAHAEM-ICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKL 1219
T HAEM I+ A + + +YVT PC C A+LQA V + + ++
Sbjct: 102 RTVHAEMNALIQCAKEGISA---NNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRI 156
>pdb|1VQ2|A Chain A, Crystal Structure Of T4-Bacteriophage Deoxycytidylate
Deaminase, Mutant R115e
Length = 193
Score = 38.1 bits (87), Expect = 0.033, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 1166 HAEMICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVW 1213
HAE+ I A+ + AT+YVTL PCP CA AI Q+ + LV+
Sbjct: 104 HAELNAILFAAE--NGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVY 149
>pdb|3MLW|H Chain H, Crystal Structure Of Anti-Hiv-1 V3 Fab 1006-15d In Complex
With An Mn V3 Peptide
pdb|3MLW|I Chain I, Crystal Structure Of Anti-Hiv-1 V3 Fab 1006-15d In Complex
With An Mn V3 Peptide
Length = 228
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 16/127 (12%)
Query: 773 STQLVGEFVEKARHEVSTSEMQKENI--AETELLYGGEKQFKKNSGHYGSEDLHLKGREP 830
S L G A +ST+ +Q + ++T + Y + SG Y ++ H+ G+
Sbjct: 61 SPSLQGRVTMSADKTLSTAYLQWSRLEASDTAMYYCARLHYSDRSGSYFNDVFHMWGQGT 120
Query: 831 RKSSESSGAKGPSDEMWHVTDSFVQPQAEAMEGNQAAGNAIVKRRGRSLWNIMADIVRLR 890
+ S+ KGPS + P +++ G AA +VK + + V +
Sbjct: 121 TVTVSSASTKGPSVFP-------LAPSSKSTSGGTAALGCLVK-------DYFPEPVTVS 166
Query: 891 WGSHAET 897
W S A T
Sbjct: 167 WNSGALT 173
>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAO|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
Length = 499
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 308 RSSAAGSCVKWDCRKKSEKKLTEVATEETKSTKQSSDIHWRIDGTTKTDYEKASTSHQ 365
R G+CV C KKL A ++ K S + W+++ T K D+EK + S Q
Sbjct: 52 RWGLGGTCVNVGC---IPKKLMHQAALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQ 106
>pdb|3G8Q|A Chain A, A Cytidine Deaminase Edits C-To-U In Transfer Rnas In
Archaea
pdb|3G8Q|B Chain B, A Cytidine Deaminase Edits C-To-U In Transfer Rnas In
Archaea
pdb|3G8Q|C Chain C, A Cytidine Deaminase Edits C-To-U In Transfer Rnas In
Archaea
pdb|3G8Q|D Chain D, A Cytidine Deaminase Edits C-To-U In Transfer Rnas In
Archaea
Length = 278
Score = 30.4 bits (67), Expect = 7.2, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 1136 EVP---VGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVT 1192
E+P V A L++ G+I+A VEE D HAE ++R + ++VT
Sbjct: 18 EIPKRTVTAALLEGGEIVA-----VEEADDE--HAE-------RKLVRRHDVEGKVVFVT 63
Query: 1193 LEPCPMCAGAILQARVSTLVWGAPNKLLG 1221
PC CA + +A V+ +V+ + LG
Sbjct: 64 ARPCLYCARELAEAGVAGVVYLGRGRGLG 92
>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
Length = 499
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 312 AGSCVKWDCRKKSEKKLTEVATEETKSTKQSSDIHWRIDGTTKTDYEKASTSHQQ 366
G+CV C KKL A ++ K S + W+++ T K D+EK + S Q
Sbjct: 56 GGTCVNVGC---IPKKLMHQAALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQN 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.125 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,733,246
Number of Sequences: 62578
Number of extensions: 1341510
Number of successful extensions: 2481
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2452
Number of HSP's gapped (non-prelim): 36
length of query: 1319
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1209
effective length of database: 8,089,757
effective search space: 9780516213
effective search space used: 9780516213
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)