BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048747
(1319 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S7I0|TADA_ARATH tRNA-specific adenosine deaminase, chloroplastic OS=Arabidopsis
thaliana GN=TADA PE=1 SV=1
Length = 1307
Score = 582 bits (1501), Expect = e-165, Method: Compositional matrix adjust.
Identities = 427/1062 (40%), Positives = 597/1062 (56%), Gaps = 118/1062 (11%)
Query: 322 KKSEKKLTEVATEETKSTKQSSDIHWRI---DGTTKTDYEKASTSHQQLDNVEEESALAV 378
+ SEKK+ + + + KS K++S +H R + +T D S +Q+ E S AV
Sbjct: 300 RSSEKKVVDQSAKRLKSRKEASQMHSRKKRDESSTGVD----SRYQKQIFEEGENSNQAV 355
Query: 379 NLDKGTRKLYSQMDVQDTKQSRRQWQEVKTVEEMHGNNVETTSESQKQFSGREENVTRGK 438
L++ RK +SQ + +S ++E + E+H N+ ET+S++QK F+ RE+ +
Sbjct: 356 TLNQRRRKKFSQTE-NRVSESTGNYEEDMEIHEVHVNDAETSSQNQKLFNEREDY----R 410
Query: 439 LRQTDLVAGNNDLKRDFQQLTRTSEILNANSERVSNLQRHSESRMKVQQKDETLVQSSVQ 498
+ +GN +++ QL E ++ +RVS ++R ++ Q++ ++Q+ +
Sbjct: 411 VHSIRNDSGNENIESSQHQLKERLETRYSSEDRVSEMRRRTKYSSS-QEEGINVLQNFPE 469
Query: 499 RTKGQHQQSSERITGQIDLRIEPEYSSELSETHDTNIKKSSTIQSETRMKNLEEN----S 554
T Q ERI+ Q R E+ SE SE HD +I+ + Q E +++N E + S
Sbjct: 470 VTNNQQPLVEERISKQAGTRRTTEHISESSEIHDIDIRNTYVSQREDQIRNQEVHAGLVS 529
Query: 555 RLQHSQKDHEHHQRIQPWKGSQ-DVSRVSVIQASEMERRTDSLRTSEKGVNQASAMTSVV 613
LQ +K ++H P + +Q D + VSV S+ R T+ R SEK + + T+V
Sbjct: 530 GLQSERKQQDYHIEHNPLQTTQSDRTSVSVSHTSDAVRYTEIQRKSEKRLIGQGSTTAVQ 589
Query: 614 KPMGATRDRHNQPDEKAMQSKLRKEAQKPTGVSSSHEKYSEESSSIQASLNLVSQARVPQ 673
++ + D + + +K+ Q G+ S K SEE+SS Q+SL + S+ ++
Sbjct: 590 SDSKVEKNGAQKEDSRLDHANSKKDGQTTLGLQSYQSKLSEEASSSQSSL-MASRTKLQL 648
Query: 674 INVEEDEEEERISQEILMPPPPQLLTISSGHVASSSGLAVQEVS---SESGSSALHTHSG 730
+++ EE + S+ L+PP QL++ SG + G+++QE+S SESG + H
Sbjct: 649 VDLVS--EEMQGSETTLIPPSSQLVSRRSGQSYRTGGVSIQEISHGTSESGYTTAFEHPR 706
Query: 731 MRTLSLHSDSYVKGGQDETYDEPLNLSTCEDALGSAHRFAESSTQLVGEFVEKARHEVST 790
S++S S E + ++ EDA+GSAHR ++S + VGEFV+KA+H V
Sbjct: 707 A-GASVNSQSA---------GELMGFTSHEDAMGSAHRLEQASEKYVGEFVKKAKHGVIN 756
Query: 791 SEMQKENIAETELLYGGEKQFKKNSGHYGSEDLHLKGREPRKSSESSGAKGPSDEMWHVT 850
E +++ +E LK R+ R+SS SGAKGPSDEMW VT
Sbjct: 757 PETEEQR----------------------AESNQLKRRDSRRSSGGSGAKGPSDEMW-VT 793
Query: 851 DSFV-QPQAEAMEGNQAAGNAIVKRRGRSLWNIMADIVRLRWGSHAETPSSAATSDAKSP 909
DS P A EGN A GNAI KR GRSLWN++ADI RLRWGS A +P S+A +S
Sbjct: 794 DSAQGTPHPGATEGNAAVGNAIFKRNGRSLWNVIADIARLRWGSRAGSPDSSAKPAGRSS 853
Query: 910 SNDSVSSGTWFSGHESNKNGDENMKREGSSPPQDATPFHQLQQERTSTHSQGETSDKIKS 969
N+SVSS TWFSG E + + D+N K + PQ+A HQ++ +TS SQ E K
Sbjct: 854 PNESVSSATWFSGREHDGSSDDNTKGD-KVLPQEAPSLHQVEVGQTSPRSQSEYPGTTKL 912
Query: 970 KSKEQNPEADMPS-SSTVIEGWSTSKRISRLSSSSAEKNLDQKAERSSSQSTSSGQEVLP 1028
K + + E + S SST++EG S S R+S S + +++ + + +P
Sbjct: 913 KQRSERHEGVVSSPSSTILEGGSVSNRMSSTSGNQIVGVDEEEGGNFEFRLPETALTEVP 972
Query: 1029 LSSQLPAETLLTPPAVEAVSETSKTYASE------------------------------- 1057
+ +LP+ L+ P ++ SE+S T AS
Sbjct: 973 M--KLPSRNLIRSPPIKESSESSLTEASSDQNFTVGEGRRYPRMDAGQNPLLFPGRNLRS 1030
Query: 1058 --------------SGS-----MVQFAQPFNSRLIEALGS-GNDGELKQRKLQRNKQVSK 1097
SGS V+ QP +++ E GS D L QRKLQRNKQV +
Sbjct: 1031 PAVMEPPVPRPRMVSGSSSLREQVEQQQPLSAKSQEETGSVSADSALIQRKLQRNKQVVR 1090
Query: 1098 DRFDEWEEAYKLESAQQKIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLV 1157
D F+EWEEAYK+E+ ++ +D++FMREAL+EAKKAADTWEVPVGAVLV GKIIARG NLV
Sbjct: 1091 DSFEEWEEAYKVEAERRTVDEIFMREALVEAKKAADTWEVPVGAVLVHDGKIIARGYNLV 1150
Query: 1158 EELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPN 1217
EELRDSTAHAEMICIR S LR+WRLAD TLYVTLEPCPMCAGAILQARV+TLVWGAPN
Sbjct: 1151 EELRDSTAHAEMICIREGSKALRSWRLADTTLYVTLEPCPMCAGAILQARVNTLVWGAPN 1210
Query: 1218 KLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQ 1277
KLLGADGSW+RLFP GGE +GSE S+KP PVHPFHPKMTIRRGVL +ECA M QFFQ
Sbjct: 1211 KLLGADGSWIRLFP-GGEG-NGSEASEKPPPPVHPFHPKMTIRRGVLESECAQTMQQFFQ 1268
Query: 1278 LRRRKKEKIADDLPPPSCVPIVNQQSKILTKMRHMFHMMFCL 1319
LRR+KK+K + PP + K+L KM H FCL
Sbjct: 1269 LRRKKKDK--NSDPPTPTDHHHHHLPKLLNKM-HQVLPFFCL 1307
>sp|P21335|TADA_BACSU tRNA-specific adenosine deaminase OS=Bacillus subtilis (strain 168)
GN=tadA PE=1 SV=1
Length = 161
Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 72/161 (44%), Positives = 98/161 (60%), Gaps = 18/161 (11%)
Query: 1117 DDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAAS 1176
D+++M+EA+ EAKKA + EVP+GAVLV +G+IIAR NL E + S AHAEM+ I A
Sbjct: 4 DELYMKEAIKEAKKAEEKGEVPIGAVLVINGEIIARAHNLRETEQRSIAHAEMLVIDEAC 63
Query: 1177 NVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEK 1236
L TWRL ATLYVTLEPCPMCAGA++ +RV +V+GA + G G+ + L E+
Sbjct: 64 KALGTWRLEGATLYVTLEPCPMCAGAVVLSRVEKVVFGAFDPKGGCSGTLMNLLQ---EE 120
Query: 1237 RDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQ 1277
R F+ + + GVL EC ++ FF+
Sbjct: 121 R---------------FNHQAEVVSGVLEEECGGMLSAFFR 146
>sp|P44931|TADA_HAEIN tRNA-specific adenosine deaminase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tadA PE=3 SV=1
Length = 173
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 95/174 (54%), Gaps = 19/174 (10%)
Query: 1112 AQQKIDDMFMREALLEAKKAADTWEVPVGAVLVQHGK-IIARGCNLVEELRDSTAHAEMI 1170
+ + D+ MR AL A KA E+PVGAVLV + II G NL D TAHAE+I
Sbjct: 6 VRSEFDEKMMRYALELADKAEALGEIPVGAVLVDDARNIIGEGWNLSIVQSDPTAHAEII 65
Query: 1171 CIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLF 1230
+R + ++ +RL ++TLYVTLEPC MCAGAIL +R+ LV+GA + GA GS F
Sbjct: 66 ALRNGAKNIQNYRLLNSTLYVTLEPCTMCAGAILHSRIKRLVFGASDYKTGAIGSRFHFF 125
Query: 1231 PDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRRRKKE 1284
D + + + + GVLA EC+ + FFQ RR +K+
Sbjct: 126 DD------------------YKMNHTLEVTSGVLAEECSQKLSTFFQKRREEKK 161
>sp|P68397|TADA_SHIFL tRNA-specific adenosine deaminase OS=Shigella flexneri GN=tadA PE=3
SV=2
Length = 167
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 20/166 (12%)
Query: 1118 DMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASN 1177
+ +MR AL AK+A D EVPVGAVLV + ++I G N D TAHAE++ +R
Sbjct: 9 EYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGL 68
Query: 1178 VLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKR 1237
V++ +RL DATLYVTLEPC MCAGA++ +R+ +V+GA + GA GS + +
Sbjct: 69 VMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLH------ 122
Query: 1238 DGSEPSDKPAGPVHP-FHPKMTIRRGVLAAECADIMHQFFQLRRRK 1282
HP + ++ I G+LA ECA ++ FF++RR++
Sbjct: 123 -------------HPGMNHRVEITEGILADECAALLSDFFRMRRQE 155
>sp|P68398|TADA_ECOLI tRNA-specific adenosine deaminase OS=Escherichia coli (strain K12)
GN=tadA PE=1 SV=2
Length = 167
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 20/166 (12%)
Query: 1118 DMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASN 1177
+ +MR AL AK+A D EVPVGAVLV + ++I G N D TAHAE++ +R
Sbjct: 9 EYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGL 68
Query: 1178 VLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKR 1237
V++ +RL DATLYVTLEPC MCAGA++ +R+ +V+GA + GA GS + +
Sbjct: 69 VMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLH------ 122
Query: 1238 DGSEPSDKPAGPVHP-FHPKMTIRRGVLAAECADIMHQFFQLRRRK 1282
HP + ++ I G+LA ECA ++ FF++RR++
Sbjct: 123 -------------HPGMNHRVEITEGILADECAALLSDFFRMRRQE 155
>sp|Q8FF24|TADA_ECOL6 tRNA-specific adenosine deaminase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=tadA PE=3 SV=2
Length = 167
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 66/166 (39%), Positives = 98/166 (59%), Gaps = 20/166 (12%)
Query: 1118 DMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASN 1177
+ +MR A+ AK+A D EVPVGAVLV + ++I G N D TAHAE++ +R
Sbjct: 9 EYWMRHAMTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGL 68
Query: 1178 VLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKR 1237
V++ +RL DATLYVTLEPC MCAGA++ +R+ +V+GA + GA GS + +
Sbjct: 69 VMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLH------ 122
Query: 1238 DGSEPSDKPAGPVHP-FHPKMTIRRGVLAAECADIMHQFFQLRRRK 1282
HP + ++ I G+LA ECA ++ FF++RR++
Sbjct: 123 -------------HPGMNHRVEITEGILADECAALLSDFFRMRRQE 155
>sp|Q8XA44|TADA_ECO57 tRNA-specific adenosine deaminase OS=Escherichia coli O157:H7 GN=tadA
PE=3 SV=2
Length = 167
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 66/166 (39%), Positives = 98/166 (59%), Gaps = 20/166 (12%)
Query: 1118 DMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASN 1177
+ +MR A+ AK+A D EVPVGAVLV + ++I G N D TAHAE++ +R
Sbjct: 9 EYWMRHAMTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGL 68
Query: 1178 VLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKR 1237
V++ +RL DATLYVTLEPC MCAGA++ +R+ +V+GA + GA GS + +
Sbjct: 69 VMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLH------ 122
Query: 1238 DGSEPSDKPAGPVHP-FHPKMTIRRGVLAAECADIMHQFFQLRRRK 1282
HP + ++ I G+LA ECA ++ FF++RR++
Sbjct: 123 -------------HPGMNHRVEITEGILADECAALLSDFFRMRRQE 155
>sp|Q7CQ08|TADA_SALTY tRNA-specific adenosine deaminase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=tadA PE=3 SV=2
Length = 172
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 67/166 (40%), Positives = 96/166 (57%), Gaps = 20/166 (12%)
Query: 1118 DMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASN 1177
+ +MR AL AK+A D EVPVGAVLV + ++I G N D TAHAE++ +R
Sbjct: 9 EYWMRHALTLAKRAWDEREVPVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGL 68
Query: 1178 VLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKR 1237
VL+ +RL D TLYVTLEPC MCAGA++ +R+ +V+GA + GA GS + +
Sbjct: 69 VLQNYRLLDTTLYVTLEPCVMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLH------ 122
Query: 1238 DGSEPSDKPAGPVHP-FHPKMTIRRGVLAAECADIMHQFFQLRRRK 1282
HP + ++ I GVL ECA ++ FF++RR++
Sbjct: 123 -------------HPGMNHRVEIIEGVLRDECATLLSDFFRMRRQE 155
>sp|Q8XGY4|TADA_SALTI tRNA-specific adenosine deaminase OS=Salmonella typhi GN=tadA PE=3
SV=2
Length = 172
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 67/166 (40%), Positives = 96/166 (57%), Gaps = 20/166 (12%)
Query: 1118 DMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASN 1177
+ +MR AL AK+A D EVPVGAVLV + ++I G N D TAHAE++ +R
Sbjct: 9 EYWMRHALTLAKRAWDEREVPVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGL 68
Query: 1178 VLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKR 1237
VL+ +RL D TLYVTLEPC MCAGA++ +R+ +V+GA + GA GS + +
Sbjct: 69 VLQNYRLLDTTLYVTLEPCVMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLH------ 122
Query: 1238 DGSEPSDKPAGPVHP-FHPKMTIRRGVLAAECADIMHQFFQLRRRK 1282
HP + ++ I GVL ECA ++ FF++RR++
Sbjct: 123 -------------HPGMNHRVEIIEGVLRDECATLLSDFFRMRRQE 155
>sp|P0DA21|TADA_STRPQ tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype
M3 (strain SSI-1) GN=tadA PE=3 SV=1
Length = 171
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 67/171 (39%), Positives = 100/171 (58%), Gaps = 19/171 (11%)
Query: 1120 FMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVL 1179
FM+EAL EA+K+ E+P+G V+V+ G+II RG N EE + HAEM+ I A+
Sbjct: 11 FMQEALKEAEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 70
Query: 1180 RTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDG 1239
WRL D TL+VT+EPC MC+GAI AR+ +++GA N+ G S ++ D
Sbjct: 71 GNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQILTD------- 123
Query: 1240 SEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRRRKKEKIADDL 1290
+ ++ + RG+LAA+CA+IM FF+ + R+++KIA L
Sbjct: 124 -----------ERLNHRVQVERGLLAADCANIMQTFFR-QGRERKKIAKHL 162
>sp|Q5XE14|TADA_STRP6 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype
M6 (strain ATCC BAA-946 / MGAS10394) GN=tadA PE=1 SV=2
Length = 171
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 67/171 (39%), Positives = 100/171 (58%), Gaps = 19/171 (11%)
Query: 1120 FMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVL 1179
FM+EAL EA+K+ E+P+G V+V+ G+II RG N EE + HAEM+ I A+
Sbjct: 11 FMQEALKEAEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 70
Query: 1180 RTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDG 1239
WRL D TL+VT+EPC MC+GAI AR+ +++GA N+ G S ++ D
Sbjct: 71 GNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQILTD------- 123
Query: 1240 SEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRRRKKEKIADDL 1290
+ ++ + RG+LAA+CA+IM FF+ + R+++KIA L
Sbjct: 124 -----------ERLNHRVQVERGLLAADCANIMQTFFR-QGRERKKIAKHL 162
>sp|P0DA20|TADA_STRP3 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype
M3 (strain ATCC BAA-595 / MGAS315) GN=tadA PE=3 SV=1
Length = 171
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 67/171 (39%), Positives = 100/171 (58%), Gaps = 19/171 (11%)
Query: 1120 FMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVL 1179
FM+EAL EA+K+ E+P+G V+V+ G+II RG N EE + HAEM+ I A+
Sbjct: 11 FMQEALKEAEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 70
Query: 1180 RTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDG 1239
WRL D TL+VT+EPC MC+GAI AR+ +++GA N+ G S ++ D
Sbjct: 71 GNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQILTD------- 123
Query: 1240 SEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRRRKKEKIADDL 1290
+ ++ + RG+LAA+CA+IM FF+ + R+++KIA L
Sbjct: 124 -----------ERLNHRVQVERGLLAADCANIMQTFFR-QGRERKKIAKHL 162
>sp|P68999|TADA_STRP1 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype
M1 GN=tadA PE=3 SV=1
Length = 171
Score = 117 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 67/171 (39%), Positives = 100/171 (58%), Gaps = 19/171 (11%)
Query: 1120 FMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVL 1179
FM+EAL EA+K+ E+P+G V+V+ G+II RG N EE + HAEM+ I A+
Sbjct: 11 FMQEALKEAEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 70
Query: 1180 RTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDG 1239
WRL D TL+VT+EPC MC+GAI AR+ +++GA N+ G S ++ D
Sbjct: 71 GNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTD------- 123
Query: 1240 SEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRRRKKEKIADDL 1290
+ ++ + RG+LAA+CA+IM FF+ + R+++KIA L
Sbjct: 124 -----------ERLNHRVQVERGLLAADCANIMQTFFR-QGRERKKIAKHL 162
>sp|Q8P2R7|Y196_STRP8 Uncharacterized deaminase spyM18_0196 OS=Streptococcus pyogenes
serotype M18 (strain MGAS8232) GN=spyM18_0196 PE=3 SV=1
Length = 159
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 67/165 (40%), Positives = 95/165 (57%), Gaps = 19/165 (11%)
Query: 1120 FMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVL 1179
FM+EAL EA+K+ E+P+G V+V+ G+II RG N EE + HAEM+ I A+
Sbjct: 11 FMQEALKEAEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 70
Query: 1180 RTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDG 1239
WRL D TL+VT+EPC MC+GAI AR+ +++GA N+ G S ++ D
Sbjct: 71 GNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQILTD------- 123
Query: 1240 SEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFF-QLRRRKK 1283
+ ++ + RG+LAA+CA+IM FF Q R RKK
Sbjct: 124 -----------ERLNHRVQVERGLLAADCANIMQTFFRQGRERKK 157
>sp|Q8K9R4|Y246_BUCAP Uncharacterized protein BUsg_246 OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=BUsg_246 PE=3 SV=1
Length = 151
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 19/164 (11%)
Query: 1117 DDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAAS 1176
D +M+ AL A A + EVP+GA+LV KII G N V DSTAHAE+I +R A
Sbjct: 6 DSYWMKIALKYAYYAEENGEVPIGAILVFQEKIIGTGWNSVISQNDSTAHAEIIALREAG 65
Query: 1177 NVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEK 1236
++ +RL + TLYVTL+PC MC GAI+ +R+ LV+GA K L + ++F
Sbjct: 66 RNIKNYRLVNTTLYVTLQPCMMCCGAIINSRIKRLVFGASYKDLKKNPFLKKIF------ 119
Query: 1237 RDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRR 1280
++ K+ I++ ++ ECA I+ FF+ +R
Sbjct: 120 -------------INLEKNKLKIKKHIMRNECAKILSNFFKNKR 150
>sp|P57343|Y255_BUCAI Uncharacterized protein BU255 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=BU255 PE=3 SV=1
Length = 161
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 64/170 (37%), Positives = 91/170 (53%), Gaps = 18/170 (10%)
Query: 1117 DDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAAS 1176
D +M+ AL A A + E+P+GA+LV +II G N D TAHAE+I +R A
Sbjct: 6 DKNWMKIALKYAYYAKEKGEIPIGAILVFKERIIGIGWNSSISKNDPTAHAEIIALRGAG 65
Query: 1177 NVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEK 1236
++ +RL + TLYVTL+PC MC GAI+Q+R+ LV+GA S LF D
Sbjct: 66 KKIKNYRLLNTTLYVTLQPCIMCCGAIIQSRIKRLVFGANCNSSDHRFSLKNLFCD---- 121
Query: 1237 RDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRRRKKEKI 1286
P + K+ I++ V+ EC+DI+ FFQ +R+ K I
Sbjct: 122 ------------PQKDY--KLDIKKNVMQRECSDILINFFQKKRKNKIHI 157
>sp|Q89AM8|Y236_BUCBP Uncharacterized protein bbp_236 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=bbp_236 PE=3 SV=1
Length = 162
Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 63/169 (37%), Positives = 88/169 (52%), Gaps = 18/169 (10%)
Query: 1117 DDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAAS 1176
D FM+ A+ AK + EVPVGAVLV + II +G N D TAHAE+ +R +
Sbjct: 5 DKYFMKCAIFLAKISEMIGEVPVGAVLVFNNTIIGKGLNSSILNHDPTAHAEIKALRNGA 64
Query: 1177 NVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEK 1236
L+ +RL TLYVTLEPC MC GAI+ +R+S LV+GA K L F
Sbjct: 65 KFLKNYRLLHTTLYVTLEPCIMCYGAIIHSRISRLVFGAKYKNLQKYICCKNHFFINKNF 124
Query: 1237 RDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRRRKKEK 1285
R K++I + VL +EC++++ FF+ +R+ K
Sbjct: 125 R------------------KISITQEVLESECSNLLSSFFKRKRKIATK 155
>sp|O67050|TADA_AQUAE tRNA-specific adenosine deaminase OS=Aquifex aeolicus (strain VF5)
GN=tadA PE=1 SV=1
Length = 151
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 72/105 (68%)
Query: 1118 DMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASN 1177
+ F++ AL EAK+A + EVPVGA++V+ G+II++ N VEEL+D TAHAEM+ I+ A
Sbjct: 4 EYFLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACR 63
Query: 1178 VLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGA 1222
L T L LYVTLEPC MC+ A++ +R+ +++ A +K G
Sbjct: 64 RLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGG 108
>sp|Q92G39|Y1285_RICCN Uncharacterized deaminase RC1285 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=RC1285 PE=3 SV=2
Length = 153
Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 62/162 (38%), Positives = 83/162 (51%), Gaps = 20/162 (12%)
Query: 1121 MREALLEAKKAADTWEVPVGAVLVQ--HGKIIARGCNLVEELRDSTAHAEMICIRAASNV 1178
M +AL +AK A D EVPVGAV+V H KIIA N EE ++ HAE+I I A N+
Sbjct: 1 MEQALKQAKIAFDKNEVPVGAVVVDRLHQKIIASTHNNTEEKNNALYHAEIIAINEACNL 60
Query: 1179 LRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRD 1238
+ + L D +YVTLEPC MCA AI +R+ L +GA + G S +R F
Sbjct: 61 ISSKNLNDYDIYVTLEPCAMCAAAIAHSRLKRLFYGASDSKHGVVESNLRYFNSSA---- 116
Query: 1239 GSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRR 1280
FH + I G+LA + +M +FF+ R
Sbjct: 117 -------------CFH-RPEIYSGILAEDSGLLMKEFFKRIR 144
>sp|C1D1Q9|TILS_DEIDV tRNA(Ile)-lysidine synthase OS=Deinococcus deserti (strain VCD115 /
DSM 17065 / LMG 22923) GN=tilS PE=3 SV=1
Length = 533
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 1118 DMFMREALLEAKKAADTWEVPVGAVLV-QHGKIIARGCNLVEELRDSTAHAEMICIRAAS 1176
D M EAL A++AA EVPVGAV++ G+II G N D T HAE+ +RAA+
Sbjct: 380 DTAMGEALGLAREAALAQEVPVGAVVLGPGGRIIGSGRNTSRADSDMTRHAELAALRAAT 439
Query: 1177 NVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADG 1224
L T L TL VTLEPCPMC GA L+ARV +V+GA N GA G
Sbjct: 440 AELGTAYLTGCTLVVTLEPCPMCLGAALEARVERIVYGASNPKAGALG 487
>sp|Q1RGK7|Y1426_RICBR Uncharacterized deaminase RBE_1426 OS=Rickettsia bellii (strain
RML369-C) GN=RBE_1426 PE=3 SV=2
Length = 145
Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 50/112 (44%), Positives = 70/112 (62%), Gaps = 2/112 (1%)
Query: 1121 MREALLEAKKAADTWEVPVGAVLV--QHGKIIARGCNLVEELRDSTAHAEMICIRAASNV 1178
MREAL +A+ A EVPVGAV+V ++ KII++ N EE ++ HAE+I I A +
Sbjct: 1 MREALKQAEIAFSKNEVPVGAVIVDRENQKIISKSYNNTEEKNNALYHAEIIAINEACRI 60
Query: 1179 LRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLF 1230
+ + L+D +YVTLEPC MCA AI +R+ L +GA + GA S +R F
Sbjct: 61 ISSKNLSDYDIYVTLEPCAMCAAAIAHSRLKRLFYGASDSKHGAVESNLRYF 112
>sp|Q68Y02|Y819_RICTY Uncharacterized deaminase RT0819 OS=Rickettsia typhi (strain ATCC
VR-144 / Wilmington) GN=RT0819 PE=3 SV=1
Length = 148
Score = 84.0 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 59/162 (36%), Positives = 82/162 (50%), Gaps = 20/162 (12%)
Query: 1121 MREALLEAKKAADTWEVPVGAVLVQ--HGKIIARGCNLVEELRDSTAHAEMICIRAASNV 1178
M +AL +A+ A D EVPVG V+V + KII N +EE ++ HAE+I I A N+
Sbjct: 1 MEQALKQARLAFDKNEVPVGVVIVYRLNQKIIVSSHNNIEEKNNALCHAEIIAINEACNL 60
Query: 1179 LRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRD 1238
+ + L D +YVTLEPC MCA AI +R+ L +GA + GA S +R F
Sbjct: 61 ISSKNLNDYDIYVTLEPCAMCASAISHSRLKRLFYGASDSKQGAVESNLRYFNSSA---- 116
Query: 1239 GSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRR 1280
FH + I G+L+ +M +FFQ R
Sbjct: 117 -------------CFH-RPEIYSGILSEHSRFLMKEFFQKMR 144
>sp|Q4UJW9|Y1319_RICFE Uncharacterized deaminase RF_1319 OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=RF_1319 PE=3 SV=2
Length = 144
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 60/162 (37%), Positives = 83/162 (51%), Gaps = 20/162 (12%)
Query: 1121 MREALLEAKKAADTWEVPVGAVLVQ--HGKIIARGCNLVEELRDSTAHAEMICIRAASNV 1178
M +AL +A A D EVPVGAV+V + KII N EE ++ HAE+I I A N+
Sbjct: 1 MEQALKQAGIAFDKNEVPVGAVIVDRLNQKIIVSSHNNTEEKNNALYHAEIIAINEACNL 60
Query: 1179 LRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRD 1238
+ + L D +YVTLEPC MCA AI +R+ L +GA + GA S +R F
Sbjct: 61 ISSKNLNDYDIYVTLEPCAMCAAAIAHSRLKRLFYGASDSKHGAVESNLRYFNSS----- 115
Query: 1239 GSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRR 1280
V + P+ I G+LA + +M +FF+ R
Sbjct: 116 -----------VCFYRPE--IYSGILAEDSRLLMKEFFKRIR 144
>sp|Q9ZCC6|Y831_RICPR Uncharacterized deaminase RP831 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP831 PE=3 SV=1
Length = 148
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 1121 MREALLEAKKAADTWEVPVGAVLV--QHGKIIARGCNLVEELRDSTAHAEMICIRAASNV 1178
M +AL +A+ A D EVPVG V+V + KII N +EE ++ HAE+I I A N+
Sbjct: 1 MEQALKQARLAFDKNEVPVGVVIVCRLNQKIIVSSHNNIEEKKNPLCHAEIIAINTACNL 60
Query: 1179 LRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLF 1230
+ + L D +YVTLEPC MCA AI +R+ L +GA + GA S +R F
Sbjct: 61 ISSKNLNDYDIYVTLEPCAMCASAISHSRLKRLFYGASDSKHGAVESNLRYF 112
>sp|O34598|GUAD_BACSU Guanine deaminase OS=Bacillus subtilis (strain 168) GN=guaD PE=1 SV=1
Length = 156
Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/78 (50%), Positives = 47/78 (60%)
Query: 1138 PVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCP 1197
P GAV+V+ G IIA G N V D TAHAE+ IR A VL ++L D LY + EPCP
Sbjct: 25 PFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCP 84
Query: 1198 MCAGAILQARVSTLVWGA 1215
MC GAI AR + + A
Sbjct: 85 MCLGAIYWARPKAVFYAA 102
>sp|Q9RV23|TILS_DEIRA tRNA(Ile)-lysidine synthase OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=tilS PE=3 SV=2
Length = 582
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 81/151 (53%), Gaps = 21/151 (13%)
Query: 1136 EVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLE 1194
EVPVGAV++ G+I+ RG N E D T HAE+ +R A+ L T L+D TL VTLE
Sbjct: 423 EVPVGAVVLNADGEIVGRGRNTSREDGDMTCHAELAALREAAAGLGTPYLSDCTLVVTLE 482
Query: 1195 PCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFH 1254
PCPMC GA L+AR+ +V+GA N GA G L D G P
Sbjct: 483 PCPMCLGAALEARIGHIVYGAANPKAGALGGVSDLLAD----HWGWRP------------ 526
Query: 1255 PKMTIRRGVLAAECADIMHQFF-QLRRRKKE 1284
T++ GV A E A ++ + F ++RRR +
Sbjct: 527 ---TVQGGVRAGEAARLLREVFGEVRRRSAD 554
>sp|Q5E9J7|ADAT2_BOVIN tRNA-specific adenosine deaminase 2 OS=Bos taurus GN=DEADC1 PE=2 SV=1
Length = 191
Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 6/112 (5%)
Query: 1120 FMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVL 1179
+M +A+ AK A D EVPVG ++V + +++ +G N V + +++T HAEM+ I A +
Sbjct: 25 WMEQAMQMAKDALDNTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQALDWC 84
Query: 1180 R------TWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGS 1225
R + LYVT+EPC MCA A+ R+ +V+G N+ G GS
Sbjct: 85 RRRGRSPSEVFEHTVLYVTVEPCIMCAAALRLMRIPLVVYGCQNERFGGCGS 136
>sp|Q7Z6V5|ADAT2_HUMAN tRNA-specific adenosine deaminase 2 OS=Homo sapiens GN=ADAT2 PE=1
SV=1
Length = 191
Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 1120 FMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVL 1179
+M EA+ AK+A + EVPVG ++V + +++ +G N V + +++T HAEM+ I +
Sbjct: 25 WMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWC 84
Query: 1180 R------TWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRL---- 1229
R + LYVT+EPC MCA A+ ++ +V+G N+ G GS + +
Sbjct: 85 RQSGKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASAD 144
Query: 1230 FPDGG 1234
P+ G
Sbjct: 145 LPNTG 149
>sp|Q72IF6|TILS_THET2 tRNA(Ile)-lysidine synthase OS=Thermus thermophilus (strain HB27 /
ATCC BAA-163 / DSM 7039) GN=tilS PE=3 SV=1
Length = 507
Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 52/82 (63%), Gaps = 7/82 (8%)
Query: 1136 EVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEP 1195
EVPVGAVLV G+++ R N VE LRD TAHAEM+ +R A R R LYVTLEP
Sbjct: 391 EVPVGAVLVLPGRVL-RAHNRVEGLRDPTAHAEMLLLREAGPEARGGR-----LYVTLEP 444
Query: 1196 CPMCAGAILQARVSTLVWGAPN 1217
C MC A+ QA V V+GA N
Sbjct: 445 CLMCHHALAQAGVEV-VYGAEN 465
>sp|Q5SI38|TILS_THET8 tRNA(Ile)-lysidine synthase OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=tilS PE=3 SV=1
Length = 507
Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 52/82 (63%), Gaps = 7/82 (8%)
Query: 1136 EVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEP 1195
EVPVGAVLV G+++ R N VE LRD TAHAEM+ +R A R R LYVTLEP
Sbjct: 391 EVPVGAVLVLPGRVL-RAHNRVEGLRDPTAHAEMLLLREAGPEARGGR-----LYVTLEP 444
Query: 1196 CPMCAGAILQARVSTLVWGAPN 1217
C MC A+ QA V V+GA N
Sbjct: 445 CLMCHHALAQAGVEV-VYGAEN 465
>sp|Q6P6J0|ADAT2_MOUSE tRNA-specific adenosine deaminase 2 OS=Mus musculus GN=Adat2 PE=2
SV=1
Length = 191
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 20/130 (15%)
Query: 1120 FMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICI------- 1172
+M EA+ AK+A + EVPVG ++V + +++ +G N V + +++T HAEM+ I
Sbjct: 25 WMEEAMRMAKEALENIEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWC 84
Query: 1173 ----RAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVR 1228
++ S V LYVT+EPC MCA A+ ++ +V+G N+ G GS +
Sbjct: 85 HQHGQSPSTVFE-----HTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLN 139
Query: 1229 L----FPDGG 1234
+ P+ G
Sbjct: 140 IASADLPNTG 149
>sp|Q4V7V8|ADAT2_XENLA tRNA-specific adenosine deaminase 2 OS=Xenopus laevis GN=adat2 PE=2
SV=1
Length = 175
Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 10/127 (7%)
Query: 1120 FMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAA---- 1175
+M +A A+ A + EVPVG ++V +++ +G N V E +++T HAEM+ I
Sbjct: 13 WMHKAFQMAQDALNNGEVPVGCLMVYGNQVVGKGRNEVNETKNATQHAEMVAIDQVLDWC 72
Query: 1176 --SNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRL---- 1229
++ T + LYVT+EPC MCAGA+ ++ +V+G N+ G GS + +
Sbjct: 73 EMNSKKSTDVFENIVLYVTVEPCIMCAGALRLLKIPLVVYGCRNERFGGCGSVLNVSGDD 132
Query: 1230 FPDGGEK 1236
PD G K
Sbjct: 133 IPDTGTK 139
>sp|Q0P4H0|ADAT2_XENTR tRNA-specific adenosine deaminase 2 OS=Xenopus tropicalis GN=adat2
PE=2 SV=1
Length = 170
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 1120 FMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAA---- 1175
+M +A A+ A + EVPVG ++V +++ +G N V E +++T HAEM+ I
Sbjct: 8 WMHKAFQMAQDALNNGEVPVGCLMVYDNQVVGKGRNEVNETKNATRHAEMVAIDQVLDWC 67
Query: 1176 -SNVLRTWRL-ADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRL---- 1229
N ++ + + LYVT+EPC MCAGA+ ++ +V+G N+ G GS + +
Sbjct: 68 EKNSKKSRDVFENIVLYVTVEPCIMCAGALRLLKIPLVVYGCRNERFGGCGSVLNVAGDN 127
Query: 1230 FPDGG 1234
PD G
Sbjct: 128 IPDTG 132
>sp|Q5RIV4|ADAT2_DANRE tRNA-specific adenosine deaminase 2 OS=Danio rerio GN=adat2 PE=2 SV=2
Length = 214
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 12/115 (10%)
Query: 1120 FMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVL 1179
+M +A A +A + EVPVG ++V + +II +G N V E +++T HAEM+ A VL
Sbjct: 24 WMAKAFDMAVEALENGEVPVGCLMVYNNEIIGKGRNEVNETKNATRHAEMV---ALDQVL 80
Query: 1180 RTWRLAD---------ATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGS 1225
RL + LYVT+EPC MCA A+ R+ +V+G N+ G GS
Sbjct: 81 DWCRLREKDCKEVCEQTVLYVTVEPCIMCAAALRLLRIPFVVYGCKNERFGGCGS 135
>sp|P47058|TAD2_YEAST tRNA-specific adenosine deaminase subunit TAD2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAD2 PE=1 SV=1
Length = 250
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
Query: 1121 MREALLEAKKAADTWEVPVGAVLVQH--GKIIARGCNLVEELRDSTAHAEMICIRAASNV 1178
MR A+ A+ A D E PV + V G+++A G N + AHAE + I +
Sbjct: 7 MRTAVRLARYALDHDETPVACIFVHTPTGQVMAYGMNDTNKSLTGVAHAEFMGIDQIKAM 66
Query: 1179 LRTWRLADA----TLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGS 1225
L + + D TLYVT+EPC MCA A+ Q + +V+G N+ G +G+
Sbjct: 67 LGSRGVVDVFKDITLYVTVEPCIMCASALKQLDIGKVVFGCGNERFGGNGT 117
>sp|O94642|TAD2_SCHPO tRNA-specific adenosine deaminase subunit tad2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=tad2 PE=3 SV=2
Length = 389
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 58/139 (41%), Gaps = 18/139 (12%)
Query: 1138 PVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCP 1197
P V V G++I RG N HAE+I I + TLYVT+EPC
Sbjct: 238 PGSCVFVYKGEVIGRGFNETNCSLSGIRHAELIAIEKILEHYPASVFKETTLYVTVEPCL 297
Query: 1198 MCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKM 1257
MCA A+ Q + + +G N G GS + + S P+ PV+P
Sbjct: 298 MCAAALKQLHIKAVYFGCGNDRFGGCGSVFSI---------NKDQSIDPSYPVYP----- 343
Query: 1258 TIRRGVLAAECADIMHQFF 1276
G+ +E +M +F+
Sbjct: 344 ----GLFYSEAVMLMREFY 358
>sp|O59834|FCYS_SCHPO Probable cytosine deaminase OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPCC965.14c PE=3 SV=1
Length = 162
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 1117 DDMFMREALLEAKKAADTWEVPVGAVLV-QHGKIIARGCNLVEELRDSTAHAEMICIRAA 1175
D ++REA+ +++A D + P G ++V ++ +I N V + D T HAE RA
Sbjct: 10 DLAYLREAIKVSQQARDEGQHPFGCIIVDENDNVIMSAGNRVPD-GDVTQHAET---RAV 65
Query: 1176 SNVLRTWR-LADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLL 1220
+ +T R L TLY + EPC MC+GAI + + +++G N+ L
Sbjct: 66 GLITKTRRDLEKCTLYTSTEPCAMCSGAIFWSGIRRMIFGLSNENL 111
>sp|Q12178|FCY1_YEAST Cytosine deaminase OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=FCY1 PE=1 SV=1
Length = 158
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 26/129 (20%)
Query: 1114 QKIDDMFMREALLEAKKAADTWEVPVGAVLVQH--GKIIARGCNLVEELRDSTAHAEMI- 1170
QK D+ EA L K+ VP+G L+ + G ++ RG N+ + +T H E+
Sbjct: 12 QKGMDIAYEEAALGYKEGG----VPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIST 67
Query: 1171 ---CIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWV 1227
C R V + D TLY TL PC MC GAI +++G P ++G + +
Sbjct: 68 LENCGRLEGKVYK-----DTTLYTTLSPCDMCTGAI-------IMYGIPRCVVGENVN-- 113
Query: 1228 RLFPDGGEK 1236
F GEK
Sbjct: 114 --FKSKGEK 120
>sp|P71677|RIBD_MYCTU Riboflavin biosynthesis protein RibD OS=Mycobacterium tuberculosis
GN=ribD PE=3 SV=1
Length = 339
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 20/122 (16%)
Query: 1138 PVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPC 1196
PVGAV+V +G+I+ G HAE++ +R A + A A + VT+EPC
Sbjct: 32 PVGAVIVDPNGRIVGAGGTEPA----GGDHAEVVALRRAGGLA-----AGAIVVVTMEPC 82
Query: 1197 ------PMCAGAILQARVSTLVWGA--PNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAG 1248
P C A+++ARV T+V+ PN + G G RL G + R G AG
Sbjct: 83 NHYGKTPPCVNALIEARVGTVVYAVADPNGIAG--GGAGRLSAAGLQVRSGVLAEQVAAG 140
Query: 1249 PV 1250
P+
Sbjct: 141 PL 142
>sp|O66534|RIBD_AQUAE Riboflavin biosynthesis protein RibD OS=Aquifex aeolicus (strain VF5)
GN=ribD PE=3 SV=1
Length = 356
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 19/121 (15%)
Query: 1114 QKIDDMFMREAL-LEAKKAADTWEVP-VGAVLVQHGKIIARGCNLVEELRDSTAHAEMIC 1171
++ID +M+ AL L K+ T P VGAV+V+ GKI+ G + + HAE++
Sbjct: 3 REIDKNYMKLALSLAKKRKGYTHPNPTVGAVVVKEGKIVGLGYHE----KAGKPHAEVMA 58
Query: 1172 IRAASNVLRTWRLADATLYVTLEPC------PMCAGAILQARVSTLVWGA--PNKLLGAD 1223
+ A + ATLYVTLEPC P C AI+++ + +V PN L+
Sbjct: 59 LGQAGE-----KAKGATLYVTLEPCTHFGRTPPCTDAIIRSGIKRVVVATLDPNPLMSGK 113
Query: 1224 G 1224
G
Sbjct: 114 G 114
>sp|P78594|FCA1_CANAX Cytosine deaminase OS=Candida albicans GN=FCA1 PE=3 SV=1
Length = 150
Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 1117 DDMFMREALLEAKKAADTWEVPVGAVLVQHG-KIIARGCNLVEELRDSTAHAEMICIRAA 1175
D ++ AL +AKK+ +P+G+ ++ ++ +G N + + H EM + A
Sbjct: 5 DKKGLQVALDQAKKSYSEGGIPIGSCIISSDDTVLGQGHNERIQKHSAILHGEMSALENA 64
Query: 1176 SNVL-RTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLG 1221
+ +T++ D T+Y TL PC MC GAIL +V G LG
Sbjct: 65 GRLPGKTYK--DCTIYTTLSPCSMCTGAILLYGFKRVVMGENVNFLG 109
>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
(isolate 3D7) GN=PF11_0240 PE=3 SV=1
Length = 5251
Score = 42.4 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 369 NVEEESALAVNLD--KGTRKLYSQMDVQDTKQSRRQWQEVKTVEEMHGNN--VETTSESQ 424
N E+E A+ +N + K K + +D K + ++ K +E+ + VE +E +
Sbjct: 4104 NTEDEKAIEINTEDEKAVEK-----NTEDEKAVEKNTEDEKAIEKNTEDEKAVEKNTEDE 4158
Query: 425 K--QFSGREENVTRGKLRQTDLVAGNNDLKRDFQQLTRTSEILNANSERVSNLQRHSESR 482
K + + +E V N + ++ +Q T +++ N+E +++++E
Sbjct: 4159 KAVEKNTEDEKAIEKNTEDEKAVEKNTEDEKAVEQNTEDEKVVEENTEDEKAVEKNTEDE 4218
Query: 483 MKVQQ--KDETLVQSSVQRTKGQHQQSSERITG 513
V++ +DE +V+ ++ KG+ Q++ E G
Sbjct: 4219 KAVEKNTEDEKVVEEKIEDEKGEEQKAEEENVG 4251
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.124 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,865,834
Number of Sequences: 539616
Number of extensions: 19748254
Number of successful extensions: 68042
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 1432
Number of HSP's that attempted gapping in prelim test: 60759
Number of HSP's gapped (non-prelim): 5670
length of query: 1319
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1189
effective length of database: 121,419,379
effective search space: 144367641631
effective search space used: 144367641631
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 68 (30.8 bits)