Query 048747
Match_columns 1319
No_of_seqs 231 out of 1588
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 12:42:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10860 tRNA-specific adenosi 100.0 4.3E-35 9.3E-40 299.9 18.6 151 1114-1282 10-160 (172)
2 COG0590 CumB Cytosine/adenosin 100.0 2.3E-34 4.9E-39 289.2 16.7 146 1114-1277 5-151 (152)
3 PRK10786 ribD bifunctional dia 100.0 1.2E-31 2.7E-36 300.4 21.2 170 1117-1317 3-191 (367)
4 TIGR00326 eubact_ribD riboflav 100.0 2.6E-30 5.7E-35 286.2 19.2 167 1121-1318 1-186 (344)
5 PLN02807 diaminohydroxyphospho 100.0 1E-29 2.2E-34 286.7 20.3 170 1114-1318 29-217 (380)
6 cd01285 nucleoside_deaminase N 99.9 1.3E-26 2.8E-31 219.7 12.5 104 1121-1224 1-105 (109)
7 PHA02588 cd deoxycytidylate de 99.9 8.5E-26 1.9E-30 230.9 15.7 115 1116-1235 2-148 (168)
8 TIGR02571 ComEB ComE operon pr 99.9 1.3E-25 2.7E-30 226.4 14.5 117 1113-1235 2-133 (151)
9 COG0117 RibD Pyrimidine deamin 99.9 3E-25 6.5E-30 222.2 13.6 134 1115-1279 4-145 (146)
10 cd01284 Riboflavin_deaminase-r 99.9 1.9E-24 4.2E-29 209.1 11.6 106 1121-1234 1-115 (115)
11 KOG1018 Cytosine deaminase FCY 99.9 2.5E-24 5.4E-29 220.9 12.6 150 1113-1278 7-161 (169)
12 cd01286 deoxycytidylate_deamin 99.9 5.5E-24 1.2E-28 209.2 12.8 101 1117-1220 1-122 (131)
13 PF00383 dCMP_cyt_deam_1: Cyti 99.9 8E-24 1.7E-28 195.1 11.7 100 1115-1215 2-102 (102)
14 KOG2771 Subunit of tRNA-specif 99.9 4.4E-23 9.5E-28 227.8 9.1 163 1086-1269 119-338 (344)
15 cd00786 cytidine_deaminase-lik 99.9 1E-21 2.2E-26 182.9 10.6 92 1121-1215 1-95 (96)
16 COG2131 ComEB Deoxycytidylate 99.8 1.3E-20 2.8E-25 192.6 10.4 118 1115-1235 7-146 (164)
17 KOG3127 Deoxycytidylate deamin 99.7 1.9E-16 4E-21 167.7 8.5 121 1110-1235 60-202 (230)
18 cd01283 cytidine_deaminase Cyt 99.5 1.5E-13 3.2E-18 130.9 10.4 94 1123-1219 3-103 (112)
19 PRK14719 bifunctional RNAse/5- 99.3 8.1E-12 1.8E-16 141.6 11.3 109 1184-1317 43-183 (360)
20 PF14439 Bd3614-deam: Bd3614-l 98.6 1.2E-07 2.5E-12 94.1 8.2 80 1137-1218 8-116 (136)
21 TIGR01354 cyt_deam_tetra cytid 98.5 7.2E-07 1.6E-11 88.5 10.4 86 1120-1207 3-94 (127)
22 PRK06848 hypothetical protein; 97.4 0.0014 3.1E-08 66.9 11.6 90 1116-1207 6-108 (139)
23 PRK12411 cytidine deaminase; P 96.9 0.0072 1.6E-07 61.4 10.3 87 1119-1207 5-97 (132)
24 PRK05578 cytidine deaminase; V 96.8 0.009 1.9E-07 60.6 10.5 87 1119-1207 5-97 (131)
25 PRK08298 cytidine deaminase; V 96.7 0.013 2.8E-07 60.0 10.3 90 1117-1209 4-102 (136)
26 TIGR01355 cyt_deam_dimer cytid 96.5 0.029 6.2E-07 63.6 12.5 102 1096-1206 6-111 (283)
27 PLN02402 cytidine deaminase 96.3 0.035 7.6E-07 63.4 11.8 104 1095-1207 8-115 (303)
28 COG0295 Cdd Cytidine deaminase 96.2 0.041 8.9E-07 56.6 10.5 94 1120-1215 8-108 (134)
29 PRK09027 cytidine deaminase; P 95.0 0.15 3.2E-06 58.4 10.7 94 1117-1211 189-289 (295)
30 PRK09027 cytidine deaminase; P 95.0 0.27 5.8E-06 56.3 12.5 104 1094-1207 32-140 (295)
31 PLN02182 cytidine deaminase 94.4 0.26 5.6E-06 57.4 10.8 89 1117-1207 45-143 (339)
32 KOG0833 Cytidine deaminase [Nu 93.9 0.61 1.3E-05 50.0 11.5 76 1135-1213 40-122 (173)
33 PF14437 MafB19-deam: MafB19-l 91.6 0.89 1.9E-05 47.8 8.8 53 1164-1217 80-136 (146)
34 TIGR01355 cyt_deam_dimer cytid 89.8 1.8 4E-05 49.6 10.0 90 1119-1209 176-274 (283)
35 PF14424 Toxin-deaminase: The 78.9 3.1 6.7E-05 42.9 4.9 45 1163-1207 72-119 (133)
36 PLN02402 cytidine deaminase 78.8 9.5 0.00021 44.4 9.1 60 1118-1178 193-254 (303)
37 PF14431 YwqJ-deaminase: YwqJ- 75.2 3.4 7.4E-05 41.8 4.0 46 1163-1208 65-125 (125)
38 PRK14059 hypothetical protein; 74.5 2.7 5.9E-05 46.9 3.4 34 1285-1318 39-75 (251)
39 PF08210 APOBEC_N: APOBEC-like 73.0 4.9 0.00011 43.4 4.7 96 1138-1235 25-140 (188)
40 PF14441 OTT_1508_deam: OTT_15 58.4 18 0.00038 37.1 5.2 45 1161-1208 64-108 (142)
41 PF14440 XOO_2897-deam: Xantho 48.3 16 0.00034 37.5 3.0 56 1162-1218 43-102 (118)
42 PF08211 dCMP_cyt_deam_2: Cyti 28.5 1.4E+02 0.0031 31.1 6.2 58 1120-1178 36-95 (124)
43 smart00552 ADEAMc tRNA-specifi 22.7 1.5E+02 0.0032 35.7 5.7 66 1138-1203 30-134 (374)
44 cd06222 RnaseH RNase H (RNase 20.9 1.7E+02 0.0037 26.5 4.6 54 1137-1192 15-69 (130)
45 COG3744 PIN domain nuclease, a 20.5 22 0.00049 37.1 -1.2 62 16-77 54-125 (130)
No 1
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=100.00 E-value=4.3e-35 Score=299.88 Aligned_cols=151 Identities=46% Similarity=0.768 Sum_probs=139.1
Q ss_pred chHHHHHHHHHHHHHHHccCCCCCCEEEEEEeCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEeC
Q 048747 1114 QKIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTL 1193 (1319)
Q Consensus 1114 ~~~DE~FMrlAIelA~kS~~sGe~PVGAVIVddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVTL 1193 (1319)
..+|++||++|+++|+++...++.|||||||++|+||+.|+|.+...+||+.||||+||++|+++++.+.+.|||||+|+
T Consensus 10 ~~~~~~~m~~A~~~A~~a~~~g~~pvGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~~~~~l~g~tlY~Tl 89 (172)
T PRK10860 10 EFSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDATLYVTL 89 (172)
T ss_pred cccHHHHHHHHHHHHHHhhccCCCCEEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhcCCCCcCCcEEEeeC
Confidence 34578999999999999998889999999999999999999998888999999999999999999988999999999999
Q ss_pred CCcHhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHHHHHHHHH
Q 048747 1194 EPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMH 1273 (1319)
Q Consensus 1194 EPCpMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLeeECadLLq 1273 (1319)
|||+||++||+|+||++|||+.+++..|+.|+++.++...+ ++|+++|+.|++++||.+||+
T Consensus 90 EPC~MC~~aii~agI~rVvyg~~d~~~g~~g~~~~~l~~~~------------------~~~~i~v~~gv~~~e~~~ll~ 151 (172)
T PRK10860 90 EPCVMCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHHPG------------------MNHRVEITEGVLADECAALLS 151 (172)
T ss_pred CCcHHHHHHHHHhCCCEEEEeecCCCCCCCCcHHHHhhccc------------------CCCCCEEEeCccHHHHHHHHH
Confidence 99999999999999999999999999999998888877555 367789999999999999999
Q ss_pred HHHHHHHcc
Q 048747 1274 QFFQLRRRK 1282 (1319)
Q Consensus 1274 ~FFk~rRkK 1282 (1319)
.||..++..
T Consensus 152 ~ff~~~~~~ 160 (172)
T PRK10860 152 DFFRMRRQE 160 (172)
T ss_pred HHHHHHhhc
Confidence 999986643
No 2
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-34 Score=289.15 Aligned_cols=146 Identities=52% Similarity=0.845 Sum_probs=137.6
Q ss_pred chHHHHHHHHHHHHHHHccCCCCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEe
Q 048747 1114 QKIDDMFMREALLEAKKAADTWEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVT 1192 (1319)
Q Consensus 1114 ~~~DE~FMrlAIelA~kS~~sGe~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVT 1192 (1319)
...|..||+.||.+|.++.+.++.|||||||+ +|+||+.|+|.....+||+.||||+||+.|++.++.|.|.|||||+|
T Consensus 5 ~~~~~~~m~~al~~A~~a~~~ge~PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~~~l~~~tlyvT 84 (152)
T COG0590 5 SEKDEDFMREALKEAKKAGDEGEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGNYRLKDCTLYVT 84 (152)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhCCCCcCCcEEEEe
Confidence 46788999999999999998889999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCcHhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHHHHHHHH
Q 048747 1193 LEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIM 1272 (1319)
Q Consensus 1193 LEPCpMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLeeECadLL 1272 (1319)
+|||+||++||+|+||+|||||+++++.|+.|+.+.++.+.+ +||.++|..|++++||..+|
T Consensus 85 ~EPC~MCagAi~~ari~rvvyga~~~~~ga~g~~~~i~~~~~------------------~~~~~~v~~g~~~~e~~~~l 146 (152)
T COG0590 85 LEPCPMCAGAIIWARIDRVVYGASDPKTGAIGSLLDILKDPR------------------LNHRVEVYGGILEEECSALL 146 (152)
T ss_pred cCCHHHHHHHHHHhCCCeEEEecCCCCcCccCcccccccCCC------------------CCcCeEEecchhhHHHHHHH
Confidence 999999999999999999999999999999998888876432 46889999999999999999
Q ss_pred HHHHH
Q 048747 1273 HQFFQ 1277 (1319)
Q Consensus 1273 q~FFk 1277 (1319)
+.||.
T Consensus 147 ~~f~~ 151 (152)
T COG0590 147 SEFFR 151 (152)
T ss_pred HHHHh
Confidence 99995
No 3
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=99.98 E-value=1.2e-31 Score=300.36 Aligned_cols=170 Identities=25% Similarity=0.398 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHHccC--CCCCCEEEEEEeCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEeCC
Q 048747 1117 DDMFMREALLEAKKAAD--TWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLE 1194 (1319)
Q Consensus 1117 DE~FMrlAIelA~kS~~--sGe~PVGAVIVddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVTLE 1194 (1319)
|++||++|+.+|+++.. .++.|||||||++|+||+.|||.. .+..|||++||++|+.. +.|||||||+|
T Consensus 3 d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~g~~HAE~~ai~~a~~~-----~~g~tlyvTlE 73 (367)
T PRK10786 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQR----AGEPHAEVHALRMAGEK-----AKGATAYVTLE 73 (367)
T ss_pred HHHHHHHHHHHHHhcCcCCCCCCCEEEEEEeCCEEEEEEeCCC----CCCCCHHHHHHHHHhhh-----cCCCEEEEecC
Confidence 67899999999999863 457889999999999999999973 45699999999999875 47999999999
Q ss_pred Cc------HhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHHHH
Q 048747 1195 PC------PMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAEC 1268 (1319)
Q Consensus 1195 PC------pMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLeeEC 1268 (1319)
|| +||+.||+++||+||||+..+|..+..|.++.+|...|| +|..|++++||
T Consensus 74 PC~~~g~t~mC~~aii~agI~rVv~~~~dp~~~~~g~~~~~l~~~gi----------------------~v~~~~~~~e~ 131 (367)
T PRK10786 74 PCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGI----------------------DVSHGLMMSEA 131 (367)
T ss_pred CccCCCCChHHHHHHHHhCCCEEEEecCCCCcccCchHHHHHhcCCc----------------------EEEcCCcHHHH
Confidence 99 899999999999999999999998888878888876665 88899999999
Q ss_pred HHHHHHHHHHHHcccc-------cccCC---CCCCCCccccCHHHHH-HHHHhhhcceee
Q 048747 1269 ADIMHQFFQLRRRKKE-------KIADD---LPPPSCVPIVNQQSKI-LTKMRHMFHMMF 1317 (1319)
Q Consensus 1269 adLLq~FFk~rRkKkp-------k~~Dg---~~~~~s~~Is~~qSk~-lhkmR~~~dai~ 1317 (1319)
.+|++.||.+.+.++| .++|| ..++.+.|||+..++. +|+||+.+|||+
T Consensus 132 ~~l~~~f~~~~~~~rP~V~~k~A~SlDGkia~~~g~s~~is~~~~~~~~h~lRa~~DaIl 191 (367)
T PRK10786 132 EALNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191 (367)
T ss_pred HHHHHHHHHHhhcccceEEEEEeecCCCCccCCCCcccccCCHHHHHHHHHHHhHCCEEE
Confidence 9999999999888887 45688 4678899999999999 499999999997
No 4
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=99.97 E-value=2.6e-30 Score=286.17 Aligned_cols=167 Identities=27% Similarity=0.373 Sum_probs=148.6
Q ss_pred HHHHHHHHHHccCC--CCCCEEEEEEeCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEeCCCc--
Q 048747 1121 MREALLEAKKAADT--WEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPC-- 1196 (1319)
Q Consensus 1121 MrlAIelA~kS~~s--Ge~PVGAVIVddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVTLEPC-- 1196 (1319)
|++|+++|+++... ++.|||||||+||+||+.|||. ..++.|||++||++|+++ +.|||||||+|||
T Consensus 1 m~~a~~~a~~~~~~~~~~~~vGaviv~~~~ii~~g~n~----~~~~~HAE~~ai~~a~~~-----~~g~tlyvtlEPC~~ 71 (344)
T TIGR00326 1 MNRALDLAKKGQGTTHPNPLVGCVIVKNGEIVGEGAHQ----KAGEPHAEVHALRQAGEN-----AKGATAYVTLEPCSH 71 (344)
T ss_pred CHHHHHHHHhcCCCCCCCCCEEEEEEeCCEEEEEeeCC----CCCCCCHHHHHHHHhccc-----cCCcEEEEeCCCCCC
Confidence 78999999998753 5678999999999999999998 468999999999999874 3799999999999
Q ss_pred ----HhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHHHHHHHH
Q 048747 1197 ----PMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIM 1272 (1319)
Q Consensus 1197 ----pMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLeeECadLL 1272 (1319)
+||+.||+++||+||||+..+|..+..|+++.++.+.|| +|..|++++||.+|+
T Consensus 72 ~g~~~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi----------------------~v~~~~~~~e~~~l~ 129 (344)
T TIGR00326 72 QGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGRGAERLKQAGI----------------------EVTFGILKEEAERLN 129 (344)
T ss_pred CCCCcHHHHHHHHcCCCEEEEEeCCCCccccchHHHHHhcCCc----------------------EEEeCCCHHHHHHHH
Confidence 899999999999999999999988888888888887775 788899999999999
Q ss_pred HHHHHHHHcccc-------cccCC---CCCCCCccccCHHHHHH-HHHhhhcceeec
Q 048747 1273 HQFFQLRRRKKE-------KIADD---LPPPSCVPIVNQQSKIL-TKMRHMFHMMFC 1318 (1319)
Q Consensus 1273 q~FFk~rRkKkp-------k~~Dg---~~~~~s~~Is~~qSk~l-hkmR~~~dai~c 1318 (1319)
+.||.+++.++| .++|| ..++...||++..++.+ |.+|+.+|+|++
T Consensus 130 ~~f~~~~~~~rP~v~~~~a~SLDG~Ia~~~g~~~wi~~~~~~~~~~~lra~~Dailv 186 (344)
T TIGR00326 130 KGFLKRMRTGLPYVQLKLAASLDGKIATASGESKWITSEAARTDAQQLRAQSDAILV 186 (344)
T ss_pred HHHHHhhhcCCCEEEEEEeeCCCCCccccCCCccccCCHHHHHHHHHHHHHCCEEEE
Confidence 999999888887 45688 44557789999988884 999999999985
No 5
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=99.97 E-value=1e-29 Score=286.71 Aligned_cols=170 Identities=24% Similarity=0.370 Sum_probs=145.7
Q ss_pred chHHHHHHHHHHHHHHHccCC--CCCCEEEEEEeCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEE
Q 048747 1114 QKIDDMFMREALLEAKKAADT--WEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYV 1191 (1319)
Q Consensus 1114 ~~~DE~FMrlAIelA~kS~~s--Ge~PVGAVIVddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYV 1191 (1319)
+.+|++||++|+.+|+++... +++|||||||++|+||+.|||.. .+..|||++||++|+.. +.||||||
T Consensus 29 ~~~d~~~M~~Al~lA~~~~~~~~~np~VGaViV~~g~Ii~~g~n~~----~g~~HAEi~Ai~~a~~~-----~~g~tlyv 99 (380)
T PLN02807 29 GDDDSFYMRRCVELARKAIGCTSPNPMVGCVIVKDGRIVGEGFHPK----AGQPHAEVFALRDAGDL-----AENATAYV 99 (380)
T ss_pred CchHHHHHHHHHHHHHhhcccCCCCCCEEEEEEECCEEEEEEeCCC----CCCcCHHHHHHHHhhhh-----cCCcEEEE
Confidence 467889999999999998753 34569999999999999999973 46789999999999874 47999999
Q ss_pred eCCCc------HhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccH
Q 048747 1192 TLEPC------PMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLA 1265 (1319)
Q Consensus 1192 TLEPC------pMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLe 1265 (1319)
|+||| |||+.||+++||+||||+..+|..+..|.++.+|...|| +|..|+++
T Consensus 100 TLEPC~h~Gktp~C~~aii~agI~rVv~g~~dp~~~~~g~g~~~l~~~gi----------------------~V~~g~~~ 157 (380)
T PLN02807 100 SLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVASKGIERLRDAGI----------------------EVTVGVEE 157 (380)
T ss_pred EcCCCcCCCCChHHHHHHHHhCCCEEEEEecCCCccccchHHHHHHhCCC----------------------EEEeCcCH
Confidence 99999 899999999999999999999988888888999888776 88889999
Q ss_pred HHHHHHHHHHHHHHHcccc-------cccCCCC---CCCCccccCHHHHH-HHHHhhhcceeec
Q 048747 1266 AECADIMHQFFQLRRRKKE-------KIADDLP---PPSCVPIVNQQSKI-LTKMRHMFHMMFC 1318 (1319)
Q Consensus 1266 eECadLLq~FFk~rRkKkp-------k~~Dg~~---~~~s~~Is~~qSk~-lhkmR~~~dai~c 1318 (1319)
+||.+|++.||++.+.++| .++||.. ++.+. ..++. .|+||+.+|||+.
T Consensus 158 ~e~~~l~~~f~~~~~~~rP~V~lK~A~SlDGkia~~~g~s~----~~s~~~vh~lRa~~DAIlV 217 (380)
T PLN02807 158 ELCRKLNEAFIHRMLTGKPFVTLRYSMSMNGCLLNQIGEGA----DDAGGYYSQLLQEYDAVIL 217 (380)
T ss_pred HHHHHHHHHHHHHHhhccccEEEEEEEcCCCCeeCCCCCCh----hhhhHHHHHHHhhCCEEEE
Confidence 9999999999999888887 4678833 23333 45555 5999999999974
No 6
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=99.94 E-value=1.3e-26 Score=219.66 Aligned_cols=104 Identities=54% Similarity=0.817 Sum_probs=98.1
Q ss_pred HHHHHHHHHHccCCCCCCEEEEEEeC-CeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEeCCCcHhH
Q 048747 1121 MREALLEAKKAADTWEVPVGAVLVQH-GKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCPMC 1199 (1319)
Q Consensus 1121 MrlAIelA~kS~~sGe~PVGAVIVdd-GKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVTLEPCpMC 1199 (1319)
|++|+++|+++...++.|||||||++ |+||+.|+|......+++.||||+||.++.+++..+.+.+++||+|+|||+||
T Consensus 1 m~~al~~a~~~~~~~~~~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~~~~~~~~~~ly~t~EPC~mC 80 (109)
T cd01285 1 MRLAIELARKALAEGEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLSGCTLYTTLEPCPMC 80 (109)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHhCCCccCCeEEEEeCCChHHH
Confidence 67899999999888999999999985 99999999998888899999999999999999888899999999999999999
Q ss_pred HHHHHHcCcCeEEecCCCccCCcCc
Q 048747 1200 AGAILQARVSTLVWGAPNKLLGADG 1224 (1319)
Q Consensus 1200 AmAIVhSGIkRVVYGapdp~~Gg~G 1224 (1319)
++||+|+||++|||+.+++..|+.+
T Consensus 81 ~~ai~~~gi~~Vvy~~~~~~~g~~~ 105 (109)
T cd01285 81 AGALLWARIKRVVYGASDPKLGGIG 105 (109)
T ss_pred HHHHHHHCCCEEEEEecCCcccccc
Confidence 9999999999999999999887655
No 7
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=99.93 E-value=8.5e-26 Score=230.86 Aligned_cols=115 Identities=30% Similarity=0.438 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCEEEEEEeCCeEEEEEEccCccc--------------------------------CCC
Q 048747 1116 IDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEEL--------------------------------RDS 1163 (1319)
Q Consensus 1116 ~DE~FMrlAIelA~kS~~sGe~PVGAVIVddGKIIA~GyN~t~~~--------------------------------~dp 1163 (1319)
.|++||.+|+.+|+++.+ ...|||||||.+|+||++|||.++.. .++
T Consensus 2 ~d~~fM~~A~~~A~~s~~-~~~~VGAVIV~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PHA02588 2 KDSTYLQIAYLVSQESKC-VSWKVGAVIEKNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSSKN 80 (168)
T ss_pred CHHHHHHHHHHHHHhcCC-CCCCEEEEEEECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccCCC
Confidence 467899999999999964 58899999999999999999987532 367
Q ss_pred CCcHHHHHHHHHHhHcCCccCCCcEEEEeCCCcHhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCC
Q 048747 1164 TAHAEMICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGE 1235 (1319)
Q Consensus 1164 t~HAEMnAIreAarkl~~ylLtG~TLYVTLEPCpMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI 1235 (1319)
+.||||+||.+|++. +..+.|+|||||+|||+||+.||+++||++|||+..++.. .+.++.+|++.||
T Consensus 81 ~~HAE~nAi~~a~~~--~~~~~g~tLYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~--~~~~~~~L~~~Gi 148 (168)
T PHA02588 81 EIHAELNAILFAARN--GISIEGATMYVTASPCPDCAKAIAQSGIKKLVYCEKYDRN--GPGWDDILRKSGI 148 (168)
T ss_pred CccHHHHHHHHHhhc--CCCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEeeccCCC--cHHHHHHHHHCCC
Confidence 899999999999875 3568899999999999999999999999999999876543 2347889998887
No 8
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=99.93 E-value=1.3e-25 Score=226.40 Aligned_cols=117 Identities=28% Similarity=0.370 Sum_probs=101.0
Q ss_pred CchHHHHHHHHHHHHHHHccCCCCCCEEEEEEeCCeEEEEEEccCcccC---------------CCCCcHHHHHHHHHHh
Q 048747 1113 QQKIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELR---------------DSTAHAEMICIRAASN 1177 (1319)
Q Consensus 1113 q~~~DE~FMrlAIelA~kS~~sGe~PVGAVIVddGKIIA~GyN~t~~~~---------------dpt~HAEMnAIreAar 1177 (1319)
++.||++||.+|+.+|+++. .++.|||||||++|+||+.|||.+.... +++.|||++||.++++
T Consensus 2 ~~~~d~~fM~~A~~~A~rs~-~~~~~VGAVIV~d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~~a~~ 80 (151)
T TIGR02571 2 RIKWDQYFMAQSHLLALRST-CTRLSVGATIVRDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQCAK 80 (151)
T ss_pred CCcHHHHHHHHHHHHHHhcC-CCCCCEEEEEEECCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHHHHHh
Confidence 46899999999999999985 4688999999999999999999975432 4789999999999886
Q ss_pred HcCCccCCCcEEEEeCCCcHhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCC
Q 048747 1178 VLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGE 1235 (1319)
Q Consensus 1178 kl~~ylLtG~TLYVTLEPCpMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI 1235 (1319)
. ...+.|++||+|+|||+||++||+++||++|||+..++.. ..++.+|++.||
T Consensus 81 ~--~~~l~g~tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~~---~~~~~~l~~~gi 133 (151)
T TIGR02571 81 F--GVSTEGAEIYVTHFPCLQCTKSIIQAGIKKIYYAQDYHNH---PYAIELFEQAGV 133 (151)
T ss_pred c--CCCcCCcEEEEeCCCcHHHHHHHHHhCCCEEEEccCCCCc---HHHHHHHHHCCC
Confidence 3 2468899999999999999999999999999999766543 236789999997
No 9
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=99.92 E-value=3e-25 Score=222.16 Aligned_cols=134 Identities=30% Similarity=0.482 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHHHHHccC--CCCCCEEEEEEeCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEe
Q 048747 1115 KIDDMFMREALLEAKKAAD--TWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVT 1192 (1319)
Q Consensus 1115 ~~DE~FMrlAIelA~kS~~--sGe~PVGAVIVddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVT 1192 (1319)
..|+.||++||.+|++... ..+++||||||++|+||+.|++. ..+..|||++||++|.. ...|+|+|||
T Consensus 4 ~~~~~~M~~Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~----~aG~pHAEv~Al~~ag~-----~a~Gat~yVT 74 (146)
T COG0117 4 ELDERYMERALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHE----KAGGPHAEVCALRMAGE-----AARGATAYVT 74 (146)
T ss_pred hHHHHHHHHHHHHHHhcCCcCCCCCceeEEEEECCEEEeeeecC----CCCCCcHHHHHHHHcCc-----ccCCCEEEEE
Confidence 4689999999999999764 34666999999999999999997 67899999999999965 4579999999
Q ss_pred CCCc------HhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHH
Q 048747 1193 LEPC------PMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAA 1266 (1319)
Q Consensus 1193 LEPC------pMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLee 1266 (1319)
|||| |+|+.||+.+||+||||+..||+....|.++..|+++|| +|..|+|++
T Consensus 75 LEPCsH~GrTPPC~~ali~agi~rVvva~~DPnp~Vag~G~~~L~~aGi----------------------~V~~gil~~ 132 (146)
T COG0117 75 LEPCSHYGRTPPCADALIKAGVARVVVAMLDPNPLVAGGGLARLRAAGI----------------------EVEVGILEE 132 (146)
T ss_pred ecCcccCCCCcchHHHHHHhCCCEEEEEecCCCccccCchHHHHHHcCC----------------------eEEEehhHH
Confidence 9999 999999999999999999988876667788999999997 888999999
Q ss_pred HHHHHHHHHHHHH
Q 048747 1267 ECADIMHQFFQLR 1279 (1319)
Q Consensus 1267 ECadLLq~FFk~r 1279 (1319)
++..|++.|+.+.
T Consensus 133 e~~~l~~~f~~~~ 145 (146)
T COG0117 133 EAEKLNEGFLKRM 145 (146)
T ss_pred HHHHHHHHHHccc
Confidence 9999999998763
No 10
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=99.91 E-value=1.9e-24 Score=209.15 Aligned_cols=106 Identities=35% Similarity=0.512 Sum_probs=96.1
Q ss_pred HHHHHHHHHHc--cCCCCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEeCCCc-
Q 048747 1121 MREALLEAKKA--ADTWEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPC- 1196 (1319)
Q Consensus 1121 MrlAIelA~kS--~~sGe~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVTLEPC- 1196 (1319)
|++|+++|+++ ...++.|||||||+ ||+||+.|+|.. .++.||||+||+++.++ .+.++|||+|+|||
T Consensus 1 m~~al~~A~~~~~~~~~~~pvGaviv~~~g~iv~~g~n~~----~~~~HAE~~ai~~a~~~----~l~g~tly~TlEPC~ 72 (115)
T cd01284 1 MRRALELAEKGRGLTSPNPPVGCVIVDDDGEIVGEGYHRK----AGGPHAEVNALASAGEK----LARGATLYVTLEPCS 72 (115)
T ss_pred CHHHHHHHHhcccccCCCCCEEEEEEeCCCeEEEEecCCC----CCcccHHHHHHHHHhhc----CCCCeEEEEeCCCCC
Confidence 78999999999 66789999999998 499999999984 39999999999999985 67899999999999
Q ss_pred -----HhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCC
Q 048747 1197 -----PMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGG 1234 (1319)
Q Consensus 1197 -----pMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaG 1234 (1319)
+||++||+|+||++|||+..+|..+..++++.+|+++|
T Consensus 73 ~~~~~~mC~~ai~~~gi~~Vv~g~~~~~~~~~~~g~~~l~~~g 115 (115)
T cd01284 73 HHGKTPPCVDAIIEAGIKRVVVGVRDPNPLVAGKGAERLRAAG 115 (115)
T ss_pred CCCCchHHHHHHHHHCcCEEEEEecCCCcccccHHHHHHHHCc
Confidence 89999999999999999999998887888888887654
No 11
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism]
Probab=99.91 E-value=2.5e-24 Score=220.90 Aligned_cols=150 Identities=45% Similarity=0.644 Sum_probs=129.0
Q ss_pred CchHHHHHHHHHHHHHHHccCCC-CCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHH---HHhHcCCccCCCc
Q 048747 1113 QQKIDDMFMREALLEAKKAADTW-EVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRA---ASNVLRTWRLADA 1187 (1319)
Q Consensus 1113 q~~~DE~FMrlAIelA~kS~~sG-e~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIre---Aarkl~~ylLtG~ 1187 (1319)
...+|..||..|+.+|.++.+.+ +.|||||||+ +|+|++.|+|.+....+++.|||+.||++ .++.+..+.+.++
T Consensus 7 ~~~~~~~~m~~a~eea~ka~d~~~~~pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~~~~~~~~~~~~~ls~~ 86 (169)
T KOG1018|consen 7 LSDHDIAFMVEAVEEAKKALDEGDEVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIREEEVMCKSLRTIDLSET 86 (169)
T ss_pred cccccHHHHHHHHHHHHhhccCCCCCceEEEEEeCCCeEEecccceecccCCcchhhHHHHHhhHHHHhhhcCceeccCC
Confidence 35678999999999999999998 9999999999 99999999999999999999999999999 8888888999999
Q ss_pred EEEEeCCCcHhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHHH
Q 048747 1188 TLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAE 1267 (1319)
Q Consensus 1188 TLYVTLEPCpMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLeeE 1267 (1319)
+||||+|||+||++||.++||++||||+.++..|+.+.+.+.+... + ..+.+.+.+..|+..++
T Consensus 87 tlyvt~ePc~mC~gal~~~gv~~vv~G~~ne~~~~~~~~~~~~~~~--------l--------~~~~~~~~~~~~i~~~~ 150 (169)
T KOG1018|consen 87 TLYVTCEPCPMCAGALAQSGVKRVVFGASNERFGGIGFVLRGNKDF--------L--------KRLGASVISRDGIEKKE 150 (169)
T ss_pred EEEEEecccHHHHHHHHHcCCCEEEEecccccccccceeeeehhhh--------h--------ccCCcceEeccchhhHH
Confidence 9999999999999999999999999999999999887766554321 0 11234456667777777
Q ss_pred HHHHHHHHHHH
Q 048747 1268 CADIMHQFFQL 1278 (1319)
Q Consensus 1268 CadLLq~FFk~ 1278 (1319)
+..+++.|+-+
T Consensus 151 ~~~~~~~f~~~ 161 (169)
T KOG1018|consen 151 AQKLLIAFYVR 161 (169)
T ss_pred hhhHHHhhccc
Confidence 77788887754
No 12
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=99.91 E-value=5.5e-24 Score=209.17 Aligned_cols=101 Identities=38% Similarity=0.440 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHccCCCCCCEEEEEEeCCeEEEEEEccCc---------------------ccCCCCCcHHHHHHHHH
Q 048747 1117 DDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVE---------------------ELRDSTAHAEMICIRAA 1175 (1319)
Q Consensus 1117 DE~FMrlAIelA~kS~~sGe~PVGAVIVddGKIIA~GyN~t~---------------------~~~dpt~HAEMnAIreA 1175 (1319)
|+.||.+|+.+|+++.+ ++.|||||||++|+||+.|+|.+. ...+++.||||+||.++
T Consensus 1 d~~~m~~A~~~A~~s~~-~~~~VGAViv~~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~a 79 (131)
T cd01286 1 DEYFMAIARLAALRSTC-PRRQVGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQA 79 (131)
T ss_pred CHHHHHHHHHHHHHcCC-CCCCEEEEEEECCEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHHHH
Confidence 46799999999999875 588999999999999999999875 35679999999999999
Q ss_pred HhHcCCccCCCcEEEEeCCCcHhHHHHHHHcCcCeEEecCCCccC
Q 048747 1176 SNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLL 1220 (1319)
Q Consensus 1176 arkl~~ylLtG~TLYVTLEPCpMCAmAIVhSGIkRVVYGapdp~~ 1220 (1319)
+++ ...+.+++||||+|||+||+.||+++||++|||+.+.+..
T Consensus 80 ~~~--~~~~~~~tLyvT~ePC~~C~~ai~~~gI~~Vvy~~~~~~~ 122 (131)
T cd01286 80 ARH--GVSLEGATLYVTLFPCIECAKLIIQAGIKKVVYAEPYDDD 122 (131)
T ss_pred hHc--CCCcCCeEEEEecCcHHHHHHHHHHhCCCEEEEeeccCcc
Confidence 886 4567899999999999999999999999999999987753
No 13
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=99.90 E-value=8e-24 Score=195.06 Aligned_cols=100 Identities=46% Similarity=0.638 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHHHHccCCCCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEeC
Q 048747 1115 KIDDMFMREALLEAKKAADTWEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTL 1193 (1319)
Q Consensus 1115 ~~DE~FMrlAIelA~kS~~sGe~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVTL 1193 (1319)
.+|+.||++|+.+|+++...+..|||||||+ +++||+.|+|......+++.|||++||.++.+. +...+.+++||+|+
T Consensus 2 ~~~~~~m~~a~~~a~~s~~~~~~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~~~~~~-~~~~~~~~~lyvt~ 80 (102)
T PF00383_consen 2 EWDEEFMRIAIELAKRSRPCGNFPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIRKAARN-GGSSLKGCTLYVTL 80 (102)
T ss_dssp CHHHHHHHHHHHHHHTHBTTTSSSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHHHHHHT-TSSGETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhhhhhhh-ccccccCcccccCC
Confidence 4799999999999999987789999999999 999999999998777889999999999999987 45567899999999
Q ss_pred CCcHhHHHHHHHcCcCeEEecC
Q 048747 1194 EPCPMCAGAILQARVSTLVWGA 1215 (1319)
Q Consensus 1194 EPCpMCAmAIVhSGIkRVVYGa 1215 (1319)
|||+||++||+|+||+||||+.
T Consensus 81 ePC~~C~~ai~~~gi~~vvy~~ 102 (102)
T PF00383_consen 81 EPCGMCAMAIVHAGIKRVVYGT 102 (102)
T ss_dssp --BHHHHHHHHHHTSSEEEEEE
T ss_pred CCHHHHHHHHHHHCcCeEEEeC
Confidence 9999999999999999999973
No 14
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification]
Probab=99.88 E-value=4.4e-23 Score=227.81 Aligned_cols=163 Identities=18% Similarity=0.307 Sum_probs=135.4
Q ss_pred eeecccCCCCcHHHHHHHHHHccCCccCc-----------------hHHHHHHHHHHHHHHHccCCCCCCEEEEEEe--C
Q 048747 1086 QRKLQRNKQVSKDRFDEWEEAYKLESAQQ-----------------KIDDMFMREALLEAKKAADTWEVPVGAVLVQ--H 1146 (1319)
Q Consensus 1086 q~KVPrN~PlTkEQ~~EWse~wp~~~eq~-----------------~~DE~FMrlAIelA~kS~~sGe~PVGAVIVd--d 1146 (1319)
.+.||.++|.|++||++|.++||...++. ..+..+|..+|.+|..+.. ..|+||+|++ -
T Consensus 119 ~~~Vp~~~p~tr~qfees~~~wpv~~h~n~~~~~l~~G~~fs~~e~~~~~ri~e~~I~~a~~~~~--~~~~~a~I~~p~~ 196 (344)
T KOG2771|consen 119 SVEVPEFAPLTREQFEESKEYWPVSFHPNHEDEQLADGSFFSDEERGEIARIGELLIAMATDGHA--SRPVSAAIVDPVM 196 (344)
T ss_pred eeeccccCCCCHHHHHhhheeeecccCCCchHHHHhccchhhHHHHHHHHHHHHHHHHHHhhhcc--ccCccceecCCcc
Confidence 45699999999999999999999843322 3345668888988888765 3889999998 5
Q ss_pred CeEEEEEEccCcccCCCCCcHHHHHHHHHHhHc--------------------------------------CCccCCCcE
Q 048747 1147 GKIIARGCNLVEELRDSTAHAEMICIRAASNVL--------------------------------------RTWRLADAT 1188 (1319)
Q Consensus 1147 GKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl--------------------------------------~~ylLtG~T 1188 (1319)
..||+.|...+. ..+|..|+.|++|..+++.. .+|+|+|++
T Consensus 197 ~~Via~~~~~~~-~~~P~eh~~mv~v~~v~rrq~~~~~~~~~~~~~~f~~~~~~~~~~~~~v~~~D~~~d~~pYLCtgyd 275 (344)
T KOG2771|consen 197 DRVIAAGTGEVC-AYNPIEHCVMVLVHFVARRQEEGTWDLHPIPLLIFNAVSSPFYKQTVAVQLLDVSADSFPYLCTGYD 275 (344)
T ss_pred ceEEecCCCccc-ccCcHHHHHHHHHHHHHHHHhccccccccccccccccccchhhhhhchhccccccccccceeeecce
Confidence 667777766543 34799999999999877642 239999999
Q ss_pred EEEeCCCcHhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHHHH
Q 048747 1189 LYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAEC 1268 (1319)
Q Consensus 1189 LYVTLEPCpMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLeeEC 1268 (1319)
+|+|||||.||+|||+|+||+||||+.+++..|++++.++++. ...|||+|+|+.|++.+++
T Consensus 276 v~ll~EPC~MCsMALvHsRikRvfy~~~~s~~G~L~s~~~i~~------------------~k~LNhry~vfr~~~e~d~ 337 (344)
T KOG2771|consen 276 VYLLHEPCAMCSMALVHSRIKRVFYCKPMSTAGGLGSLYRIHQ------------------RKSLNHRYEVFRGYLEEDP 337 (344)
T ss_pred EEEecChHHHHHHHHHHHhhhheeeccCCCCCCCccceeEeee------------------ccccCcceEEEEeeccccc
Confidence 9999999999999999999999999999999999998877764 3458999999999998776
Q ss_pred H
Q 048747 1269 A 1269 (1319)
Q Consensus 1269 a 1269 (1319)
.
T Consensus 338 ~ 338 (344)
T KOG2771|consen 338 I 338 (344)
T ss_pred c
Confidence 5
No 15
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.86 E-value=1e-21 Score=182.92 Aligned_cols=92 Identities=32% Similarity=0.455 Sum_probs=84.3
Q ss_pred HHHHHHHHHHc-cCCCCCCEEEEEEeC--CeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEeCCCcH
Q 048747 1121 MREALLEAKKA-ADTWEVPVGAVLVQH--GKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCP 1197 (1319)
Q Consensus 1121 MrlAIelA~kS-~~sGe~PVGAVIVdd--GKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVTLEPCp 1197 (1319)
|+.|+++|+++ ...++.|||||||++ |.||+.|+|......+++.|||++||.++..... +.+++||+|+|||+
T Consensus 1 m~~a~~~a~~a~~~~~~~pVGaviv~~~~g~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~~~---~~~~tly~tlePC~ 77 (96)
T cd00786 1 MTEALKAADLGYAKESNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGSEGD---TKGQMLYVALSPCG 77 (96)
T ss_pred CHHHHHHHHhccCCCCCCCEEEEEEEeCCCCeEeeeEeccCCCCCCeeCHHHHHHHHHHHcCC---CCceEEEEECCChH
Confidence 78899999998 466899999999985 9999999999888889999999999999987643 78999999999999
Q ss_pred hHHHHHHHcCcCeEEecC
Q 048747 1198 MCAGAILQARVSTLVWGA 1215 (1319)
Q Consensus 1198 MCAmAIVhSGIkRVVYGa 1215 (1319)
||++||+|+||++|||+.
T Consensus 78 mC~~ai~~~gi~~Vv~~~ 95 (96)
T cd00786 78 ACAQLIIELGIKDVIVVL 95 (96)
T ss_pred HHHHHHHHhCCCCEEEee
Confidence 999999999999999975
No 16
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.83 E-value=1.3e-20 Score=192.57 Aligned_cols=118 Identities=35% Similarity=0.374 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHHHHccCCCCCCEEEEEEeCCeEEEEEEccCccc----------------------CCCCCcHHHHHH
Q 048747 1115 KIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEEL----------------------RDSTAHAEMICI 1172 (1319)
Q Consensus 1115 ~~DE~FMrlAIelA~kS~~sGe~PVGAVIVddGKIIA~GyN~t~~~----------------------~dpt~HAEMnAI 1172 (1319)
.||++||.+|...|.++.+ ....||||||+|++||++|||..+.. ...+.|||+|||
T Consensus 7 ~wdeyfm~~A~l~a~Rstc-~r~~VGAvIvkd~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE~NAi 85 (164)
T COG2131 7 MWDEYFMAIAELVALRSTC-PRRQVGAVIVKDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQNAI 85 (164)
T ss_pred HHHHHHHHHHHHHHHHccC-cccceeEEEEeCCeEEEeecCCCCcccCCcCccCceecccccccchhHHHHHHHHHHHHH
Confidence 4999999999999999975 57789999999999999999987321 123589999999
Q ss_pred HHHHhHcCCccCCCcEEEEeCCCcHhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCC
Q 048747 1173 RAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGE 1235 (1319)
Q Consensus 1173 reAarkl~~ylLtG~TLYVTLEPCpMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI 1235 (1319)
.+|++.. ..+.|++||+||.||.+|+.+|+++||++|||+.+++..-..-....+|.++||
T Consensus 86 l~aa~~g--~~~~~atlYvt~~PC~~Cak~Ii~aGIk~Vvy~~~Y~~~~~~~~s~~l~~~agv 146 (164)
T COG2131 86 LQAARHG--VGLEGATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYPTETVAPYSQELLEEAGV 146 (164)
T ss_pred HHHHhcC--CCCCCcEEEEEecccHHHHHHHHHhCceEEEeecCCCcchhhHHHHHHHHhCCc
Confidence 9999864 345899999999999999999999999999999998854222345778888887
No 17
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.65 E-value=1.9e-16 Score=167.73 Aligned_cols=121 Identities=31% Similarity=0.391 Sum_probs=99.6
Q ss_pred CccCchHHHHHHHHHHHHHHHccCCCCCCEEEEEEe-CCeEEEEEEccCcc--------------------cCCCCCcHH
Q 048747 1110 ESAQQKIDDMFMREALLEAKKAADTWEVPVGAVLVQ-HGKIIARGCNLVEE--------------------LRDSTAHAE 1168 (1319)
Q Consensus 1110 ~~eq~~~DE~FMrlAIelA~kS~~sGe~PVGAVIVd-dGKIIA~GyN~t~~--------------------~~dpt~HAE 1168 (1319)
....+.||.+||.+|...|.++.+ ++..|||+||+ ++.||++|||.++. ....+.|||
T Consensus 60 ~~~~lswd~yFM~iA~LsA~RSkD-pntqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~k~~yv~HAE 138 (230)
T KOG3127|consen 60 RNGYLSWDDYFMAIAFLSAKRSKD-PNTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDLKYCYVVHAE 138 (230)
T ss_pred cccCccHHHHHHHHHHHHHHhccC-cccceeeEEEcCCCEEEEeccCCCcCCCCCCCCcccccccccCCCcceEEEeehH
Confidence 345679999999999999999986 58889988876 99999999998732 122378999
Q ss_pred HHHHHHHHhHcCCccCCCcEEEEeCCCcHhHHHHHHHcCcCeEEecCCCc-cCCcCcchhhccccCCC
Q 048747 1169 MICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNK-LLGADGSWVRLFPDGGE 1235 (1319)
Q Consensus 1169 MnAIreAarkl~~ylLtG~TLYVTLEPCpMCAmAIVhSGIkRVVYGapdp-~~Gg~GSgirLL~eaGI 1235 (1319)
+|||.++... .+.+|+||+|+.||.-|+..|+++||+.|||+..+. ..-++-...++|..+||
T Consensus 139 ~NAi~~~~~~----~~~~~~lYvtl~PC~~Ca~liiq~GIkeV~~~~~~~~~k~~~~~s~~~l~~agv 202 (230)
T KOG3127|consen 139 ENAILNKGRE----RVGGCSLYVTLCPCNECAKLIIQAGIKEVYYSSSYYVDKYADRASKRMLDLAGV 202 (230)
T ss_pred HHHHHHhCcc----ccCCceEEEeecchHHHHHHHHHhhhhheeeccccccchHHHHHHHHHHHhcCc
Confidence 9999998764 456899999999999999999999999999998653 22235556788888886
No 18
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=99.48 E-value=1.5e-13 Score=130.94 Aligned_cols=94 Identities=28% Similarity=0.222 Sum_probs=79.8
Q ss_pred HHHHHHHHcc-CCCCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEe-----CCC
Q 048747 1123 EALLEAKKAA-DTWEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVT-----LEP 1195 (1319)
Q Consensus 1123 lAIelA~kS~-~sGe~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVT-----LEP 1195 (1319)
.|+..+..+. ..++.||||+|+. +|+|+ .|+|......+++.|||+.||.++..... ....++||+| ++|
T Consensus 3 ~a~~~~~~a~~~~~~~~vga~i~~~~g~i~-~G~n~e~~~~~~~~hAE~~ai~~~~~~~~--~~~~~~i~vs~~~~~~sP 79 (112)
T cd01283 3 AALAAAEFAYAPYSNFTVGAALLTKDGRIF-TGVNVENASYGLTLCAERTAIGKAVSEGL--RRYLVTWAVSDEGGVWSP 79 (112)
T ss_pred HHHHHHHhCcCCCCCCeEEEEEEECCCCEE-EeEEeecCCCCCCcCHHHHHHHHHHHcCC--CceEEEEEEECCCCccCC
Confidence 4666666763 4578999999997 69998 89998777788999999999999987543 3468999999 999
Q ss_pred cHhHHHHHHHcCcCeEEecCCCcc
Q 048747 1196 CPMCAGAILQARVSTLVWGAPNKL 1219 (1319)
Q Consensus 1196 CpMCAmAIVhSGIkRVVYGapdp~ 1219 (1319)
|.||+.+|.+.++++|+|...++.
T Consensus 80 C~~C~~~l~~~~~~~v~~~~~~~~ 103 (112)
T cd01283 80 CGACRQVLAEFLPSRLYIIIDNPK 103 (112)
T ss_pred CHHHHHHHHHhCCCCeEEEEEcCC
Confidence 999999999999999999987654
No 19
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=99.30 E-value=8.1e-12 Score=141.65 Aligned_cols=109 Identities=9% Similarity=0.045 Sum_probs=89.8
Q ss_pred CCCcEEEEeCCCcHhHHHHHHHcCcCeEEecCCCccCCcCc---chhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 048747 1184 LADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADG---SWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIR 1260 (1319)
Q Consensus 1184 LtG~TLYVTLEPCpMCAmAIVhSGIkRVVYGapdp~~Gg~G---SgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~ 1260 (1319)
..|.++|+|++||.-|+.+|+.+||+|||++. ||...|.| ..+.+|+.+|| +|
T Consensus 43 i~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~-D~d~~G~~~~~~~~~~L~~aGi----------------------~V- 98 (360)
T PRK14719 43 INANFITVSNTPVFQIADDLIAENISEVILLT-DFDRAGRVYAKNIMEEFQSRGI----------------------KV- 98 (360)
T ss_pred CCCcEEEEeCCchHHHHHHHHHcCCCEEEEEE-CCCCCCCccchHHHHHHHHCCC----------------------EE-
Confidence 46999999999999999999999999999999 44432233 33889999887 77
Q ss_pred ccccHHHHHHHHHHHHHH-------HH-----------cccc-------cccCC---CCCCCCccccCHHHHHH-HHHhh
Q 048747 1261 RGVLAAECADIMHQFFQL-------RR-----------RKKE-------KIADD---LPPPSCVPIVNQQSKIL-TKMRH 1311 (1319)
Q Consensus 1261 ~GVLeeECadLLq~FFk~-------rR-----------kKkp-------k~~Dg---~~~~~s~~Is~~qSk~l-hkmR~ 1311 (1319)
.|+++++|..|++.||+. .+ .++| .++|| ..++.+. |||..++.+ |+||+
T Consensus 99 ~~~l~~e~~~l~~~~~~~ie~~~~~~~~~~~~~~~~~~~~rP~V~lK~A~SLDGkIA~~~G~s~-IT~~~ar~~vh~lRa 177 (360)
T PRK14719 99 NNLIRKEIIKYSRGDLKDIESLYPYISRRININSDLSDIMLPYVISNVGMTLDGKLATIENDSR-ISGENDLKRVHEIRK 177 (360)
T ss_pred EeehHHHHHHHhHHhhhcchhhhhhheeccccccccccCCCCeEEEEEEEcCcCcccCCCCCCC-cCCHHHHHHHHHHHH
Confidence 579999999999987766 66 4566 56788 4556666 999999995 99999
Q ss_pred hcceee
Q 048747 1312 MFHMMF 1317 (1319)
Q Consensus 1312 ~~dai~ 1317 (1319)
.+|||+
T Consensus 178 ~~DAIL 183 (360)
T PRK14719 178 DVDAIM 183 (360)
T ss_pred HCCEEE
Confidence 999997
No 20
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=98.60 E-value=1.2e-07 Score=94.05 Aligned_cols=80 Identities=26% Similarity=0.254 Sum_probs=64.3
Q ss_pred CCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHc---------------------CCccCCCcEEEEeCC
Q 048747 1137 VPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVL---------------------RTWRLADATLYVTLE 1194 (1319)
Q Consensus 1137 ~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl---------------------~~ylLtG~TLYVTLE 1194 (1319)
..|.|.||+ +|.++..+.|. ...+-+.|||||.|.-.-... ...+-.|++||+||.
T Consensus 8 R~VvA~lv~~~G~l~daa~Nt--Na~N~~LHAE~NLl~p~~~~~~~~~~~~~d~~~~~~g~g~~~~~~l~~ga~l~vTlq 85 (136)
T PF14439_consen 8 RRVVAALVSPDGELVDAAVNT--NADNKMLHAEWNLLMPWLWREWVDSPTDDDEIGNRPGDGPEERRPLPPGARLLVTLQ 85 (136)
T ss_pred cceeEEEECCCCcEEEeeecc--CCccceeehhhhhhhHHHHhhcccCCCcccccccCCCcchhhcCcCCCCcEEEEech
Confidence 457777776 89999999985 236789999999997654433 123446899999999
Q ss_pred CcHhHHHHHHHcCc-------CeEEecCCCc
Q 048747 1195 PCPMCAGAILQARV-------STLVWGAPNK 1218 (1319)
Q Consensus 1195 PCpMCAmAIVhSGI-------kRVVYGapdp 1218 (1319)
||.||+..+.++.. .+|||+.++|
T Consensus 86 cCkMCAalv~a~~d~pg~~~~~~vvY~~ed~ 116 (136)
T PF14439_consen 86 CCKMCAALVCAASDRPGRRVPIDVVYLNEDP 116 (136)
T ss_pred hHHHHHHHHHHHhhCcCCccceEEEEecCCC
Confidence 99999999999877 8899998876
No 21
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=98.49 E-value=7.2e-07 Score=88.52 Aligned_cols=86 Identities=22% Similarity=0.285 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHccCC-CCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEE----eC
Q 048747 1120 FMREALLEAKKAADT-WEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYV----TL 1193 (1319)
Q Consensus 1120 FMrlAIelA~kS~~s-Ge~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYV----TL 1193 (1319)
++..|...+.++..- .+.||||+|+. +|+|+. |.|..+...+++.|||+.||.++..... ..+....++. ..
T Consensus 3 l~~~a~~a~~~ay~PyS~~~vgAa~~~~~G~i~~-G~n~e~~~~~~s~~AE~~Ai~~a~~~g~-~~i~~i~vv~~~~~~~ 80 (127)
T TIGR01354 3 LFKAAQEARKNAYAPYSNFKVGAALLTKDGRIFT-GVNVENASYPLTICAERSAIGKAISAGY-RKFVAIAVADSADDPV 80 (127)
T ss_pred HHHHHHHHHHhcCCCcCCCeEEEEEEeCCCCEEE-EEeecccCCCCCcCHHHHHHHHHHHcCC-CCeEEEEEEeCCCCCc
Confidence 456788888888753 47899999996 799888 9998777789999999999999987632 2444445543 57
Q ss_pred CCcHhHHHHHHHcC
Q 048747 1194 EPCPMCAGAILQAR 1207 (1319)
Q Consensus 1194 EPCpMCAmAIVhSG 1207 (1319)
.||.||...|...+
T Consensus 81 sPCG~Crq~l~e~~ 94 (127)
T TIGR01354 81 SPCGACRQVLAEFA 94 (127)
T ss_pred CccHHHHHHHHHhC
Confidence 89999999999986
No 22
>PRK06848 hypothetical protein; Validated
Probab=97.42 E-value=0.0014 Score=66.86 Aligned_cols=90 Identities=22% Similarity=0.177 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEE---
Q 048747 1116 IDDMFMREALLEAKKAADTWEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYV--- 1191 (1319)
Q Consensus 1116 ~DE~FMrlAIelA~kS~~sGe~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYV--- 1191 (1319)
.+..+++.|..++..+..-.+.+|||+|.. +|+|+ .|.|--+.....+.|||..||-.+..... ..+.-..+..
T Consensus 6 ~~~~L~~~A~~a~~~ay~ps~f~VgAa~l~~~G~i~-~G~NvEnas~~~tiCAEr~Ai~~av~~g~-~~i~~i~~v~~~~ 83 (139)
T PRK06848 6 EDYELIKAAEKVIEKRYRNDWHHVGAALRTKTGRIY-AAVHLEAYVGRITVCAEAIAIGKAISEGD-HEIDTIVAVRHPK 83 (139)
T ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEEEEeCCCCEE-EEEEeecCCCCcccCHHHHHHHHHHHcCC-CceEEEEEEecCc
Confidence 445678888888888876567889999986 88877 79996443455689999999999876421 1121111121
Q ss_pred ---------eCCCcHhHHHHHHHcC
Q 048747 1192 ---------TLEPCPMCAGAILQAR 1207 (1319)
Q Consensus 1192 ---------TLEPCpMCAmAIVhSG 1207 (1319)
..-||.+|-..|.+.+
T Consensus 84 ~~~~~~~~~~~~PCG~CRQvl~E~~ 108 (139)
T PRK06848 84 PHEDDREIWVVSPCGACRELISDYG 108 (139)
T ss_pred ccccccCCCccCCChhhHHHHHHhC
Confidence 2459999999999885
No 23
>PRK12411 cytidine deaminase; Provisional
Probab=96.88 E-value=0.0072 Score=61.36 Aligned_cols=87 Identities=23% Similarity=0.350 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHccCC-CCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEe----
Q 048747 1119 MFMREALLEAKKAADT-WEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVT---- 1192 (1319)
Q Consensus 1119 ~FMrlAIelA~kS~~s-Ge~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVT---- 1192 (1319)
.++..|...+.++..- ...+|||+|.. +|+|+ .|.|--+....++.|||..||-.+.... ...+....++..
T Consensus 5 ~L~~~a~~~~~~ay~pyS~~~VgAa~~t~~G~i~-~G~nvEn~s~~~s~CAE~~Ai~~av~~g-~~~i~~i~v~~~~~~~ 82 (132)
T PRK12411 5 QLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEG-DKEFVAIAIVADTKRP 82 (132)
T ss_pred HHHHHHHHHHHhcCCCccCCceEEEEEeCCCCEE-EEEEeecCCCCcCcCHHHHHHHHHHHCC-CCceEEEEEEeCCCCC
Confidence 4667788777777754 46889999986 89877 7998544445568999999999986532 112211122221
Q ss_pred CCCcHhHHHHHHHcC
Q 048747 1193 LEPCPMCAGAILQAR 1207 (1319)
Q Consensus 1193 LEPCpMCAmAIVhSG 1207 (1319)
.-||.+|-..|.+..
T Consensus 83 ~sPCG~CRQ~l~Ef~ 97 (132)
T PRK12411 83 VPPCGACRQVMVELC 97 (132)
T ss_pred cCCchhHHHHHHHhC
Confidence 369999999999863
No 24
>PRK05578 cytidine deaminase; Validated
Probab=96.82 E-value=0.009 Score=60.59 Aligned_cols=87 Identities=28% Similarity=0.359 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHccCC-CCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEE----e
Q 048747 1119 MFMREALLEAKKAADT-WEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYV----T 1192 (1319)
Q Consensus 1119 ~FMrlAIelA~kS~~s-Ge~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYV----T 1192 (1319)
.++..|...+.++..- .+.+|||+|+. +|+|. .|.|--+....++.|||..||-.+.... ...+.-..++. .
T Consensus 5 ~L~~~a~~~~~~ay~PyS~f~Vgaa~~~~~G~i~-~G~nvEna~~~~~~CAE~~Ai~~av~~G-~~~i~~i~vv~~~~~~ 82 (131)
T PRK05578 5 ELIEAAIEASEKAYAPYSKFPVGAALLTDDGRIY-TGCNIENASYGLTNCAERTAIFKAISEG-GGRLVAIACVGETGEP 82 (131)
T ss_pred HHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEEeeCccccCCcCHHHHHHHHHHHcC-CCceEEEEEEecCCCc
Confidence 3567778777777752 46789999987 88876 6888544445578999999999987542 11222222211 2
Q ss_pred CCCcHhHHHHHHHcC
Q 048747 1193 LEPCPMCAGAILQAR 1207 (1319)
Q Consensus 1193 LEPCpMCAmAIVhSG 1207 (1319)
.-||-||-..|....
T Consensus 83 ~sPCG~CRQ~l~e~~ 97 (131)
T PRK05578 83 LSPCGRCRQVLAEFG 97 (131)
T ss_pred cCccHHHHHHHHHhC
Confidence 579999999999774
No 25
>PRK08298 cytidine deaminase; Validated
Probab=96.66 E-value=0.013 Score=60.05 Aligned_cols=90 Identities=12% Similarity=0.047 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHccCCCCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEe---
Q 048747 1117 DDMFMREALLEAKKAADTWEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVT--- 1192 (1319)
Q Consensus 1117 DE~FMrlAIelA~kS~~sGe~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVT--- 1192 (1319)
++.++..|......+..--. +|||+|+. ||+|+ +|.|--+.....+.-||..||-.+.... ...+.-..++..
T Consensus 4 ~~~L~~~A~~a~~~aY~PYS-~VgAAllt~dG~i~-tG~NvEnas~~~t~CAEr~Ai~~av~~G-~~~~~~i~v~~~~~~ 80 (136)
T PRK08298 4 EQALYDVAKQLIEQRYPNGW-GGAAAMRVEDGTIL-TSVAPEVINASTELCMETGAICEAHKLQ-KRVTHSICVARENEH 80 (136)
T ss_pred HHHHHHHHHHHHHhccCCCC-ceeEEEEeCCCCEE-EEEeecCCCCCcchhHHHHHHHHHHHCC-CceEEEEEEEcCCCc
Confidence 34567788877777775445 99999986 88877 7999644445578999999999886542 111111122211
Q ss_pred -----CCCcHhHHHHHHHcCcC
Q 048747 1193 -----LEPCPMCAGAILQARVS 1209 (1319)
Q Consensus 1193 -----LEPCpMCAmAIVhSGIk 1209 (1319)
.-||-+|-..|...+-.
T Consensus 81 ~~~~~~sPCG~CRQvl~Ef~~~ 102 (136)
T PRK08298 81 SELKVLSPCGVCQERLFYWGPD 102 (136)
T ss_pred CCCcccCCChhHHHHHHHhCCC
Confidence 35999999999988544
No 26
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=96.47 E-value=0.029 Score=63.59 Aligned_cols=102 Identities=19% Similarity=0.187 Sum_probs=69.5
Q ss_pred cHHHHHHHHHHccCCccCchHHHHHHHHHHHHHHHccC-CCCCCEEEEEEe-CCeEEEEEEccC--cccCCCCCcHHHHH
Q 048747 1096 SKDRFDEWEEAYKLESAQQKIDDMFMREALLEAKKAAD-TWEVPVGAVLVQ-HGKIIARGCNLV--EELRDSTAHAEMIC 1171 (1319)
Q Consensus 1096 TkEQ~~EWse~wp~~~eq~~~DE~FMrlAIelA~kS~~-sGe~PVGAVIVd-dGKIIA~GyN~t--~~~~dpt~HAEMnA 1171 (1319)
..++++.|....-+ ..+..++..|...+..+.. -.+.+|||+|.. +|+|+ .|.|-- +.....+.|||..|
T Consensus 6 ~a~~~~~l~~~~~~-----~~~~~L~~~a~~a~~~AyaPYS~F~VGAall~~~G~iy-~GvNvE~~nas~~~tiCAEr~A 79 (283)
T TIGR01355 6 TAEQAQSLGHNFGV-----TDPKLLPKLIPKAASYARAPISKFNVGAVGRGSSGRFY-LGVNVEFPGLPLHHSIHAEQFL 79 (283)
T ss_pred CHHHHHHHHHHhCC-----ChHHHHHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEeccCCCCCCccccHHHHH
Confidence 34555666554443 3444677777777777764 247889999986 88876 699852 12233478999999
Q ss_pred HHHHHhHcCCccCCCcEEEEeCCCcHhHHHHHHHc
Q 048747 1172 IRAASNVLRTWRLADATLYVTLEPCPMCAGAILQA 1206 (1319)
Q Consensus 1172 IreAarkl~~ylLtG~TLYVTLEPCpMCAmAIVhS 1206 (1319)
|-.+..... ..+ ..|.++.-||-+|-..|...
T Consensus 80 i~~Av~~Ge-~~i--~~Iav~~~PCG~CRQ~l~Ef 111 (283)
T TIGR01355 80 ISHLALNNE-RGL--NDLAVSYAPCGHCRQFLNEI 111 (283)
T ss_pred HHHHHHcCC-Cce--EEEEEEeCCcchhHHHHHHh
Confidence 998875421 122 34566678999999999987
No 27
>PLN02402 cytidine deaminase
Probab=96.27 E-value=0.035 Score=63.41 Aligned_cols=104 Identities=20% Similarity=0.186 Sum_probs=67.1
Q ss_pred CcHHHHHHHHHHccCCccCchHHHHHHHHHHHHHHHccCC-CCCCEEEEEEe-CCeEEEEEEccCcccCCC--CCcHHHH
Q 048747 1095 VSKDRFDEWEEAYKLESAQQKIDDMFMREALLEAKKAADT-WEVPVGAVLVQ-HGKIIARGCNLVEELRDS--TAHAEMI 1170 (1319)
Q Consensus 1095 lTkEQ~~EWse~wp~~~eq~~~DE~FMrlAIelA~kS~~s-Ge~PVGAVIVd-dGKIIA~GyN~t~~~~dp--t~HAEMn 1170 (1319)
++.+++..|....-+ ..++..+.++...+..+..- .+.+|||++.. +|+|. .|.|--+..... +.|||..
T Consensus 8 ~~a~~~~~l~~~~g~-----~~~~ll~~l~~~A~~~AyaPYS~F~VGAa~l~~~G~i~-~GvNVEnasy~l~~tiCAEr~ 81 (303)
T PLN02402 8 IEASEAESMAKQSGL-----TVLQLLPSLVKSAQSLARPPISKYHVGAVGLGSSGRIF-LGVNLEFPGLPLHHSVHAEQF 81 (303)
T ss_pred EcHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHhcCCCCCCCeeeEEEEeCCCCEE-EEEeeecCCCCCCCcccHHHH
Confidence 345666666655543 33444555555555555432 46789999986 88866 699853222222 7999999
Q ss_pred HHHHHHhHcCCccCCCcEEEEeCCCcHhHHHHHHHcC
Q 048747 1171 CIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQAR 1207 (1319)
Q Consensus 1171 AIreAarkl~~ylLtG~TLYVTLEPCpMCAmAIVhSG 1207 (1319)
||-.+..... ..+ -.|.++.-||.||-..|....
T Consensus 82 Ai~~av~~G~-~~i--~~iaV~~sPCG~CRQ~l~Ef~ 115 (303)
T PLN02402 82 LITNLTLNAE-PHL--KYVAVSAAPCGHCRQFFQEIR 115 (303)
T ss_pred HHHHHHHcCC-Cce--EEEEEEeCCCcccHHHHHHhc
Confidence 9999865421 122 245666789999999999773
No 28
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.041 Score=56.60 Aligned_cols=94 Identities=22% Similarity=0.225 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHccC-CCCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEe----C
Q 048747 1120 FMREALLEAKKAAD-TWEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVT----L 1193 (1319)
Q Consensus 1120 FMrlAIelA~kS~~-sGe~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVT----L 1193 (1319)
.+..|.+.+..+.. -.+.+|||+|.- +|+|+ .|.|--+....-+.|||..||-.+-.. +...+.-..+|.. .
T Consensus 8 l~~~a~~a~~~ay~PYS~F~VGAa~~t~~G~i~-tG~NiEnasy~~t~CAErsAI~~ais~-G~~~~~~v~v~~~~~~~~ 85 (134)
T COG0295 8 LFALAPEAAANAYAPYSKFKVGAALRTKDGRIY-TGANVENASYGLTVCAERSAIFKAISE-GKRKFDAVVVVADTGKPV 85 (134)
T ss_pred HHHHHHHHHHhccCcccCCcEEEEEEeCCCCEE-EEEeeecccccchhhHHHHHHHHHHHc-CCCcEEEEEEEcCCCCCc
Confidence 44455555555553 358899999986 77765 799975555667899999999998775 3333333333333 5
Q ss_pred CCcHhHHHHHHHcC-cCeEEecC
Q 048747 1194 EPCPMCAGAILQAR-VSTLVWGA 1215 (1319)
Q Consensus 1194 EPCpMCAmAIVhSG-IkRVVYGa 1215 (1319)
-||-||-.-|.... =...||..
T Consensus 86 sPCG~CRQ~i~Ef~~~d~~ii~~ 108 (134)
T COG0295 86 SPCGACRQVLAEFCGDDTLIILL 108 (134)
T ss_pred CCcHHHHHHHHHhcCCCceEEEe
Confidence 79999999998765 34444443
No 29
>PRK09027 cytidine deaminase; Provisional
Probab=95.04 E-value=0.15 Score=58.36 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHccCC-CCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCC-ccCCCcEEEEe-
Q 048747 1117 DDMFMREALLEAKKAADT-WEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRT-WRLADATLYVT- 1192 (1319)
Q Consensus 1117 DE~FMrlAIelA~kS~~s-Ge~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~-ylLtG~TLYVT- 1192 (1319)
++.++..|+..+.++..- .+.||||+|.. ||+|+ .|+|--+-..+|+..||..||..+-..... ..+....|+..
T Consensus 189 ~~~L~~~A~~aa~~SYaPYS~f~vGaAl~~~dG~i~-~G~nvENAAynpslcaer~Al~~~v~~G~~~~~i~~i~lv~~~ 267 (295)
T PRK09027 189 GDPLIQAALDAANRSHAPYSQSYSGVALETKDGRIY-TGRYAENAAFNPSLPPLQGALNLLNLSGEDFSDIQRAVLVEKA 267 (295)
T ss_pred HHHHHHHHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHHHHcCCCccCEEEEEEEeCC
Confidence 345788899999888753 47889999986 88877 699877777889999999999987643211 12444455544
Q ss_pred ---CCCcHhHHHHHHHcCcCeE
Q 048747 1193 ---LEPCPMCAGAILQARVSTL 1211 (1319)
Q Consensus 1193 ---LEPCpMCAmAIVhSGIkRV 1211 (1319)
.-||.||-..|...+-..+
T Consensus 268 ~~~ispcg~cRq~L~ef~~~~~ 289 (295)
T PRK09027 268 DAKLSQWDATQATLKALGCHEL 289 (295)
T ss_pred CCCcCchHHHHHHHHHhCCCCc
Confidence 3599999999987654444
No 30
>PRK09027 cytidine deaminase; Provisional
Probab=94.96 E-value=0.27 Score=56.30 Aligned_cols=104 Identities=22% Similarity=0.214 Sum_probs=66.5
Q ss_pred CCcHHHHHHHHHHccCCccCchHHHHHHHHHHHHHHH-ccC-CCCCCEEEEEEe-CCeEEEEEEccCcc--cCCCCCcHH
Q 048747 1094 QVSKDRFDEWEEAYKLESAQQKIDDMFMREALLEAKK-AAD-TWEVPVGAVLVQ-HGKIIARGCNLVEE--LRDSTAHAE 1168 (1319)
Q Consensus 1094 PlTkEQ~~EWse~wp~~~eq~~~DE~FMrlAIelA~k-S~~-sGe~PVGAVIVd-dGKIIA~GyN~t~~--~~dpt~HAE 1168 (1319)
-++.+++..+....-+ ..++ ++...+..|.. +.. -.+.+|||++.. +|+|. .|.|--.. ....+.|||
T Consensus 32 ~l~~~~~~~l~~~~g~-----~~~~-l~~~ll~~a~~~AyaPyS~F~VGAa~~~~sG~iy-~GvNvE~~~~s~~~tiCAE 104 (295)
T PRK09027 32 MLTAEQVSQLKSASGL-----DDDA-LALALLPLAAACAVTPISHFNVGAIARGVSGNFY-FGANMEFAGAALQQTVHAE 104 (295)
T ss_pred EECHHHHHHHHHHhCC-----CHHH-HHHHHHHHHHHhccCCCCCCcEEEEEEeCCCCEE-EEEeeccCCCCCCCCcCHH
Confidence 4567777777766554 2222 33233444443 333 247889999986 88876 79995221 223579999
Q ss_pred HHHHHHHHhHcCCccCCCcEEEEeCCCcHhHHHHHHHcC
Q 048747 1169 MICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQAR 1207 (1319)
Q Consensus 1169 MnAIreAarkl~~ylLtG~TLYVTLEPCpMCAmAIVhSG 1207 (1319)
..||-.+.... ...+ ..|.++.-||.+|-.-|....
T Consensus 105 r~Ai~~a~~~G-e~~i--~~I~v~~sPCG~CRQ~l~E~~ 140 (295)
T PRK09027 105 QSAISHAWLRG-EKAI--ADITVNYTPCGHCRQFMNELN 140 (295)
T ss_pred HHHHHHHHHCC-CCce--EEEEEEecCchhhHHHHHHhC
Confidence 99999987542 1122 345556779999999998763
No 31
>PLN02182 cytidine deaminase
Probab=94.41 E-value=0.26 Score=57.35 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHccC-CCCCCEEEEEEe-CCeEEEEEEccCcccC--CCCCcHHHHHHHHHHhHcCCccCCCcEEEEe
Q 048747 1117 DDMFMREALLEAKKAAD-TWEVPVGAVLVQ-HGKIIARGCNLVEELR--DSTAHAEMICIRAASNVLRTWRLADATLYVT 1192 (1319)
Q Consensus 1117 DE~FMrlAIelA~kS~~-sGe~PVGAVIVd-dGKIIA~GyN~t~~~~--dpt~HAEMnAIreAarkl~~ylLtG~TLYVT 1192 (1319)
++.+..++-..+..+.. -.+.+|||++.. +|+|. .|.|--+... ..+.|||..||..+..... ..+....+.+.
T Consensus 45 ~~ll~~Ll~~A~~~AyaPyS~F~VGAa~l~~sG~iy-~GvNVEnas~pl~~tICAEr~AI~~A~~~Ge-~~i~~iaVaV~ 122 (339)
T PLN02182 45 PIRLPNLIRKAMCLARAPISKYKVGAVGRASSGRVY-LGVNVDFPGLPLHHSIHAEQFLVTNLALNSE-KDLCELAVAIS 122 (339)
T ss_pred HHHHHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEeecCCCccCCccCHHHHHHHHHHHCCC-CceEEEEEEEe
Confidence 33333333333444443 247889999986 88866 6998532221 2279999999999876421 12221123222
Q ss_pred ------CCCcHhHHHHHHHcC
Q 048747 1193 ------LEPCPMCAGAILQAR 1207 (1319)
Q Consensus 1193 ------LEPCpMCAmAIVhSG 1207 (1319)
.-||.+|-..|....
T Consensus 123 ~~~~~~~sPCG~CRQfm~Ef~ 143 (339)
T PLN02182 123 TDGKEFGTPCGHCLQFLMEMS 143 (339)
T ss_pred cCCCCCcCCCchhHHHHHHhC
Confidence 579999999999884
No 32
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=93.92 E-value=0.61 Score=50.04 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=56.3
Q ss_pred CCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEe------CCCcHhHHHHHHHcC
Q 048747 1135 WEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVT------LEPCPMCAGAILQAR 1207 (1319)
Q Consensus 1135 Ge~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVT------LEPCpMCAmAIVhSG 1207 (1319)
.+.|||||++- +|+|+ .|.|--+...++.+|||..||.+++-+.-.. -.+.+.+. ..||.-|..-|...+
T Consensus 40 S~fkVGA~~r~ssGrif-~G~NVEn~~~~~sIcAEr~ai~~l~l~g~~k--~~~~aV~~~~~~~f~tPCG~CRQfl~Ef~ 116 (173)
T KOG0833|consen 40 SKFKVGAAGRASSGRIF-LGVNVENASYHHSICAERFAIANLALNGERK--FRAIAVVAYEDGDFTTPCGVCRQFLREFG 116 (173)
T ss_pred cCCceEEEEEecCCcEE-EeeeecccCCCCcccHHHHHHHHHHHcCccc--ceEEEEEecCCCCcCCCcHHHHHHHHHHh
Confidence 47789999996 77766 7999766667789999999999988653211 12233343 689999999999988
Q ss_pred cCeEEe
Q 048747 1208 VSTLVW 1213 (1319)
Q Consensus 1208 IkRVVY 1213 (1319)
-.-.++
T Consensus 117 ~~~~l~ 122 (173)
T KOG0833|consen 117 NASLLL 122 (173)
T ss_pred hcceee
Confidence 764444
No 33
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=91.59 E-value=0.89 Score=47.75 Aligned_cols=53 Identities=28% Similarity=0.407 Sum_probs=42.7
Q ss_pred CCcHHHHHHHHHHhHcCCccCCCcEEEEeCCCcHhHHHHHH----HcCcCeEEecCCC
Q 048747 1164 TAHAEMICIRAASNVLRTWRLADATLYVTLEPCPMCAGAIL----QARVSTLVWGAPN 1217 (1319)
Q Consensus 1164 t~HAEMnAIreAarkl~~ylLtG~TLYVTLEPCpMCAmAIV----hSGIkRVVYGapd 1217 (1319)
..|||+.||.+|..+ +...-..++|||...+|..|-..|- .+||+.+.+..++
T Consensus 80 ~~HAE~~aiqqA~d~-G~~~g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I~~~~ 136 (146)
T PF14437_consen 80 KAHAEAGAIQQAYDA-GKTVGRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTIHEPD 136 (146)
T ss_pred HHHHHHHHHHHHHHh-cCccCCeEEEEECcccchHHHHHHHHHHHHcCCCeEEEEecC
Confidence 589999999999987 3222578999999999999987665 5799998776553
No 34
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=89.83 E-value=1.8 Score=49.55 Aligned_cols=90 Identities=16% Similarity=0.124 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHccCC-CCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCC---cEEEEe-
Q 048747 1119 MFMREALLEAKKAADT-WEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLAD---ATLYVT- 1192 (1319)
Q Consensus 1119 ~FMrlAIelA~kS~~s-Ge~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG---~TLYVT- 1192 (1319)
.++..|+..+.++..- .+.||||+|+. +|+|+ .|.|--+-..+++..||..||-.+-....+..+.+ .+|--+
T Consensus 176 ~l~~~A~~a~~~sYaPYS~f~vgaal~~~~g~i~-~G~nvENAay~~slcaer~Ai~~~v~~g~g~~~~~i~~aVl~e~~ 254 (283)
T TIGR01355 176 HLKQQALKAANRSYAPYSKSPSGVALLDKEGKVY-RGWYIESAAFNPSLGPVQAALVDFMANGGGKGFEDIVRAVLVEKA 254 (283)
T ss_pred HHHHHHHHHHHhccCCCcCCceeEEEEeCCCCEE-EEEEeecCCCCCcccHHHHHHHHHHHhCCCCChhheeEEEEEecC
Confidence 4778888888888752 47899999987 88876 79997777788999999999998865421222222 222211
Q ss_pred ---CCCcHhHHHHHHHcCcC
Q 048747 1193 ---LEPCPMCAGAILQARVS 1209 (1319)
Q Consensus 1193 ---LEPCpMCAmAIVhSGIk 1209 (1319)
.-||.||...|-..+..
T Consensus 255 ~~~vs~~~~~r~~l~~~~p~ 274 (283)
T TIGR01355 255 DAKVSHEATARTLLETIAPS 274 (283)
T ss_pred CCccChHHHHHHHHHHhCCC
Confidence 35899999888776433
No 35
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=78.94 E-value=3.1 Score=42.89 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=36.5
Q ss_pred CCCcHHHHHHHHHHhHcCCc-cCC--CcEEEEeCCCcHhHHHHHHHcC
Q 048747 1163 STAHAEMICIRAASNVLRTW-RLA--DATLYVTLEPCPMCAGAILQAR 1207 (1319)
Q Consensus 1163 pt~HAEMnAIreAarkl~~y-lLt--G~TLYVTLEPCpMCAmAIVhSG 1207 (1319)
-...+|..+|..++.++... ... ..+||+-+.||..|...|-+..
T Consensus 72 R~~DsE~KiL~~ia~~l~~~~~~~~G~i~l~te~~pC~SC~~vi~qF~ 119 (133)
T PF14424_consen 72 RNNDSEYKILEDIAKKLGDNPDPSGGTIDLFTELPPCESCSNVIEQFK 119 (133)
T ss_pred ccccHHHHHHHHHHHHhccccccCCceEEEEecCCcChhHHHHHHHHH
Confidence 35689999999999988543 333 4689999999999999888764
No 36
>PLN02402 cytidine deaminase
Probab=78.77 E-value=9.5 Score=44.41 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHccCC-CCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhH
Q 048747 1118 DMFMREALLEAKKAADT-WEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNV 1178 (1319)
Q Consensus 1118 E~FMrlAIelA~kS~~s-Ge~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAark 1178 (1319)
..++..|+..+.++..- ...||||+|+. +|+|+ .|+|--+-..+++.+||..||-.+-..
T Consensus 193 ~~L~~~A~~a~~~sYaPYS~f~VGaal~~~dG~i~-~G~nvENAay~~slcAer~Ai~~~v~~ 254 (303)
T PLN02402 193 DDLKNEALEAANKSHAPYSNCPSGVALMDCEGKVY-RGSYMESAAYNPSMGPVQAALVAYVAG 254 (303)
T ss_pred HHHHHHHHHHHHcccCCccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHHHHc
Confidence 45788889888888752 47889999987 78876 799977777889999999999987654
No 37
>PF14431 YwqJ-deaminase: YwqJ-like deaminase
Probab=75.23 E-value=3.4 Score=41.79 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=31.5
Q ss_pred CCCcHHHHHHHHHHhHcC--CccCCCcEEEEe-------------CCCcHhHHHHHHHcCc
Q 048747 1163 STAHAEMICIRAASNVLR--TWRLADATLYVT-------------LEPCPMCAGAILQARV 1208 (1319)
Q Consensus 1163 pt~HAEMnAIreAarkl~--~ylLtG~TLYVT-------------LEPCpMCAmAIVhSGI 1208 (1319)
.-.|||+.||.++-.... ...+.++.+|+- ..||..|+..|.|.||
T Consensus 65 ~G~cAEv~avn~~L~~~d~~~~~~~~a~~~~~~ir~~~~~~~G~~~~pC~nC~~~l~~~~v 125 (125)
T PF14431_consen 65 AGRCAEVIAVNDALWARDAARRSLEGAKITTRRIREPGDPEHGKYAPPCRNCAALLKHFGV 125 (125)
T ss_pred CCcccHHHHHHHHHHhhhccccccccccceeeeeecccCCCCCCCCCCCchHHHHHhhcCC
Confidence 568999999999877522 122233333222 4689999999999886
No 38
>PRK14059 hypothetical protein; Provisional
Probab=74.55 E-value=2.7 Score=46.86 Aligned_cols=34 Identities=6% Similarity=0.015 Sum_probs=28.9
Q ss_pred cccCC--CCCCCCccccCHHHHHH-HHHhhhcceeec
Q 048747 1285 KIADD--LPPPSCVPIVNQQSKIL-TKMRHMFHMMFC 1318 (1319)
Q Consensus 1285 k~~Dg--~~~~~s~~Is~~qSk~l-hkmR~~~dai~c 1318 (1319)
.++|| ..++.+.||++..++.+ |+||+.+|||+.
T Consensus 39 ~SlDGkia~~g~s~~It~~~~r~~~h~lRa~~DAIlV 75 (251)
T PRK14059 39 TSLDGAATVDGRSGGLGGPADRRVFGLLRALADVVVV 75 (251)
T ss_pred EcCcccccCCCCCcCcCCHHHHHHHHHHHHHCCEEEE
Confidence 56687 56678899999999995 999999999973
No 39
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=72.98 E-value=4.9 Score=43.36 Aligned_cols=96 Identities=23% Similarity=0.270 Sum_probs=54.7
Q ss_pred CEEEEEEe--CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHc--CCccCCCcEEEEeCCCcHh----HHHHHHHc---
Q 048747 1138 PVGAVLVQ--HGKIIARGCNLVEELRDSTAHAEMICIRAASNVL--RTWRLADATLYVTLEPCPM----CAGAILQA--- 1206 (1319)
Q Consensus 1138 PVGAVIVd--dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl--~~ylLtG~TLYVTLEPCpM----CAmAIVhS--- 1206 (1319)
.+-|.-|. +|..+-.|+-.- . .....|||+.-|..+.... .+...-.-|.|+|.-||+- ||..|+..
T Consensus 25 t~Lcy~v~~~~~~~~~~g~~~n-~-~~~~~HAE~~fl~~i~~~~~~~~~~~y~ITwy~SwSPC~~~~~~Ca~~i~~FL~~ 102 (188)
T PF08210_consen 25 TYLCYEVEGRDGSWVQRGYFRN-E-NCKGRHAELCFLDWIRSWLLFDPDQIYRITWYLSWSPCPESDHCCAEKIAEFLKK 102 (188)
T ss_dssp -EEEEEEEEECTTEEEECECCS-T-TSTSB-HHHHHHHHCCCGTB-TTTSEEEEEEEESSS--CC----HHHHHHHHHCC
T ss_pred EEEEEEEEEecCCCceEEEEEC-C-CCCCCCHHHHHHHHHHHhhccCCCceEEEEEEEecCCCcchhhHHHHHHHHHHHH
Confidence 36677775 554566666531 0 1168999999999876543 2222234599999999999 99999864
Q ss_pred ----CcCeEEecC-CCcc-CCc---CcchhhccccCCC
Q 048747 1207 ----RVSTLVWGA-PNKL-LGA---DGSWVRLFPDGGE 1235 (1319)
Q Consensus 1207 ----GIkRVVYGa-pdp~-~Gg---~GSgirLL~eaGI 1235 (1319)
+|.=.||.+ .+.. .+. ...+++.|..+||
T Consensus 103 ~~~~~v~L~I~~arLY~~~~~~~~~~~eGLr~L~~aGv 140 (188)
T PF08210_consen 103 HLKPNVSLSIFAARLYYHWEPEPLWNQEGLRRLASAGV 140 (188)
T ss_dssp C--TTEEEEEEESS--STTSTT---HHHHHHHHHHCTE
T ss_pred hCCCCCeEEEEEEeeeeecCCcchhHHHHHHHHHHcCC
Confidence 333334443 1111 111 2356777777775
No 40
>PF14441 OTT_1508_deam: OTT_1508-like deaminase
Probab=58.44 E-value=18 Score=37.07 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=34.7
Q ss_pred CCCCCcHHHHHHHHHHhHcCCccCCCcEEEEeCCCcHhHHHHHHHcCc
Q 048747 1161 RDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARV 1208 (1319)
Q Consensus 1161 ~dpt~HAEMnAIreAarkl~~ylLtG~TLYVTLEPCpMCAmAIVhSGI 1208 (1319)
..+..||||..|...... ..-..-.|=++.-||.+|...|...+=
T Consensus 64 ~~~~vHaE~~ll~~~~~~---~~~~~~yIG~SK~~C~lC~~~~~~~~~ 108 (142)
T PF14441_consen 64 FKPSVHAEMQLLDHLERH---FDPPPRYIGCSKPSCFLCYLYFQAHGQ 108 (142)
T ss_pred CCCCeehHHHHHHHHHHh---cCCCCCEEEEeCchHHhHHHHHHHhCc
Confidence 568999999999988765 111344555788999999999998883
No 41
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase
Probab=48.33 E-value=16 Score=37.54 Aligned_cols=56 Identities=18% Similarity=0.262 Sum_probs=39.6
Q ss_pred CCCCcHHHHHHHHHHhHcCCccCCCcEEEEeCCCcHh---HHHHHHHc-CcCeEEecCCCc
Q 048747 1162 DSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCPM---CAGAILQA-RVSTLVWGAPNK 1218 (1319)
Q Consensus 1162 dpt~HAEMnAIreAarkl~~ylLtG~TLYVTLEPCpM---CAmAIVhS-GIkRVVYGapdp 1218 (1319)
....|+|..+|..+.+.- .---.=.-||+-+|||.. |+..|-.. -=-+|+|..++.
T Consensus 43 ~~~~H~E~~il~~l~~~~-v~p~~I~elYtEl~PC~~~~~C~~~l~~~~p~a~vt~s~~yg 102 (118)
T PF14440_consen 43 GGKPHSERAILHQLRAHG-VPPEQITELYTELEPCELGGYCARMLRNSLPGAEVTYSFDYG 102 (118)
T ss_pred CCCCChHHHHHHHHHHcC-CcHHHHHHHHHhcccccccchHHHHHHhhCCCCeEEEeccCC
Confidence 467899999999987521 000012468999999988 99999876 233778877654
No 42
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase. Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.
Probab=28.49 E-value=1.4e+02 Score=31.12 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHccCC-CCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhH
Q 048747 1120 FMREALLEAKKAADT-WEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNV 1178 (1319)
Q Consensus 1120 FMrlAIelA~kS~~s-Ge~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAark 1178 (1319)
....|+..|.++..- ...|+|++|+. +|+|. .|++--+--.+|+..+...||..+--.
T Consensus 36 l~~~A~~Aa~~syaPYS~~~sGvAL~~~~G~i~-~G~y~EnAAfNPSl~PlQ~AL~~~~~~ 95 (124)
T PF08211_consen 36 LVQAALEAANRSYAPYSKCPSGVALLTSDGRIY-TGRYAENAAFNPSLPPLQAALVQAVLA 95 (124)
T ss_dssp HHHHHHHHHCT-B-TTT---EEEEEEETTS-EE-EEE-B--TTSTT-B-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEEeecccCCChHHHHHHHHHHHHc
Confidence 677888888888752 47889999996 88877 577655567889999999999887653
No 43
>smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase).
Probab=22.74 E-value=1.5e+02 Score=35.71 Aligned_cols=66 Identities=18% Similarity=0.307 Sum_probs=39.0
Q ss_pred CEEEEEEeC-----CeEEEEEEccC--cc---cCC----CCCcHHHHHHHHHHhHc----------------------CC
Q 048747 1138 PVGAVLVQH-----GKIIARGCNLV--EE---LRD----STAHAEMICIRAASNVL----------------------RT 1181 (1319)
Q Consensus 1138 PVGAVIVdd-----GKIIA~GyN~t--~~---~~d----pt~HAEMnAIreAarkl----------------------~~ 1181 (1319)
+.+|+|+.+ .+||+.|.-.- .. ..+ ...|||+.|.+-.-+-+ +.
T Consensus 30 vLA~iV~~~~~~~~~~vvslgTGtKc~~~~~~~~~G~~lhD~HAEVlArR~f~r~l~~el~~~~~~~~~sif~~~~~~~~ 109 (374)
T smart00552 30 ILAGVVMTNGMDNEKQVVSLGTGTKCISGEKLSPNGLVLNDCHAEILARRGFLRFLYSELQLFNSSSEDSIFEKNKEGGK 109 (374)
T ss_pred eEEEEEEEecCCCceEEEEEecCccccchhhhccCCCEEEeCCHHHHHHHHHHHHHHHHHHHHhccCCCceEEECCCCCc
Confidence 355555542 25888775321 10 111 14799999998755421 02
Q ss_pred ccCC---CcEEEEeCCCcHhHHHHH
Q 048747 1182 WRLA---DATLYVTLEPCPMCAGAI 1203 (1319)
Q Consensus 1182 ylLt---G~TLYVTLEPCpMCAmAI 1203 (1319)
|.|+ ...||+|.-||--|+|-.
T Consensus 110 ~~Lk~~v~lhlYiS~~PCGdAs~~~ 134 (374)
T smart00552 110 YKLKSNVLFHLYISTLPCGDASIFS 134 (374)
T ss_pred eEeCCCcEEEEEeccCCcccccccc
Confidence 3333 247999999997777654
No 44
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=20.91 E-value=1.7e+02 Score=26.45 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=30.5
Q ss_pred CCEEEEEEeC-CeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEe
Q 048747 1137 VPVGAVLVQH-GKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVT 1192 (1319)
Q Consensus 1137 ~PVGAVIVdd-GKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVT 1192 (1319)
..+|+|+.+. +.++...... . ......+||+.||..+.+..........++|+.
T Consensus 15 ~g~g~v~~~~~~~~~~~~~~~-~-~~~s~~~aEl~al~~al~~~~~~~~~~i~i~~D 69 (130)
T cd06222 15 AGAGVVLRDPGGEVLLSGGLL-G-GNTTNNRAELLALIEALELALELGGKKVNIYTD 69 (130)
T ss_pred eEEEEEEEeCCCeEEEecccc-C-CCCcHHHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 3478888874 4443332221 1 244568999999988876543222334445544
No 45
>COG3744 PIN domain nuclease, a component of toxin-antitoxin system (PIN domain) [Signal transduction mechanisms]
Probab=20.51 E-value=22 Score=37.11 Aligned_cols=62 Identities=23% Similarity=0.460 Sum_probs=54.1
Q ss_pred hhcCCCCcccccccchhccccCCcccccccccccccceeeccCCccceEe----------ccCCceeeccCc
Q 048747 16 LLQLPKPTKAHFSNQVSAAHNNRVPVNTSYLCGLRQSTLIQRPPYKRLIF----------GFKDRIFSRLPV 77 (1319)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~rqs~liq~~~~~rli~----------g~~d~~~~r~p~ 77 (1319)
-|+||.|.-..|-+++..++--=+||+|..++-.|+..++-..|+.|+|+ -..|+.|-+.|.
T Consensus 54 kL~L~~~~~~~~~~~~~~~~i~~lpI~~~ha~~~~~Lp~~HkDPfDRiiiAqa~~~~~~l~t~D~~~~~ypv 125 (130)
T COG3744 54 KLPLPEPPNSWVPDALRRNGIELLPITPAHAIAARALPLHHKDPFDRIIIAQAQEENITLATVDSVFDAYPV 125 (130)
T ss_pred CCCCCCCHHHHHHHHHhhcCCeeccCCHHHHHHHhhCCccCCCchHHHHHHHHHhcCCeEeccccccccCCh
Confidence 47899999888999999999999999999999999999999999998874 578888776664
Done!