Query 048747
Match_columns 1319
No_of_seqs 231 out of 1588
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 22:16:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nx8_A TRNA-specific adenosine 100.0 2.4E-36 8.3E-41 308.6 16.4 154 1113-1284 12-165 (179)
2 1z3a_A TRNA-specific adenosine 100.0 1.6E-35 5.4E-40 299.6 16.9 151 1115-1283 7-157 (168)
3 2b3j_A TRNA adenosine deaminas 100.0 2.4E-35 8.1E-40 295.3 17.2 151 1115-1283 5-155 (159)
4 3dh1_A TRNA-specific adenosine 100.0 3.7E-35 1.3E-39 302.4 13.2 155 1114-1284 23-183 (189)
5 2a8n_A Cytidine and deoxycytid 100.0 3.7E-34 1.3E-38 281.8 14.3 142 1116-1275 3-144 (144)
6 1wwr_A TRNA adenosine deaminas 100.0 6.7E-34 2.3E-38 289.0 16.5 148 1116-1282 22-169 (171)
7 2g84_A Cytidine and deoxycytid 100.0 4E-34 1.4E-38 295.6 13.3 174 1099-1289 10-191 (197)
8 2b3z_A Riboflavin biosynthesis 100.0 1.6E-32 5.5E-37 305.5 18.5 173 1115-1318 12-203 (373)
9 1wkq_A Guanine deaminase; doma 100.0 2.9E-33 1E-37 282.7 9.4 146 1114-1278 8-158 (164)
10 2g6v_A Riboflavin biosynthesis 100.0 6.2E-32 2.1E-36 303.7 18.3 174 1114-1318 27-219 (402)
11 2hxv_A Diaminohydroxyphosphori 100.0 1.1E-31 3.6E-36 297.7 19.0 172 1117-1318 14-204 (360)
12 1p6o_A Cytosine deaminase; hyd 100.0 1.9E-31 6.6E-36 268.0 10.3 147 1114-1289 11-159 (161)
13 1vq2_A DCMP deaminase, deoxycy 99.9 2.1E-27 7.1E-32 243.7 8.8 115 1116-1235 2-169 (193)
14 2hvw_A Deoxycytidylate deamina 99.9 3.4E-26 1.2E-30 235.2 10.9 119 1111-1235 36-169 (184)
15 2w4l_A DCMP deaminse, deoxycyt 99.9 4E-27 1.4E-31 240.6 1.7 118 1111-1235 7-147 (178)
16 3g8q_A Predicted RNA-binding p 99.8 3.8E-20 1.3E-24 196.5 7.2 89 1128-1235 13-101 (278)
17 2nyt_A Probable C->U-editing e 99.6 4E-16 1.4E-20 161.7 11.7 97 1136-1235 32-140 (190)
18 1uwz_A Cytidine deaminase; CDD 99.3 4.3E-12 1.5E-16 125.2 11.1 89 1117-1207 3-97 (136)
19 2fr5_A Cytidine deaminase; tet 99.1 2E-10 7E-15 115.0 11.5 91 1115-1207 13-110 (146)
20 2z3g_A Blasticidin-S deaminase 99.1 4.7E-10 1.6E-14 110.1 12.7 92 1114-1209 4-101 (130)
21 3b8f_A Putative blasticidin S 98.7 5.6E-08 1.9E-12 96.7 9.7 96 1116-1214 3-107 (142)
22 1r5t_A Cytidine deaminase; zin 98.4 1.2E-06 4.2E-11 87.2 11.7 91 1115-1207 9-107 (142)
23 2d30_A Cytidine deaminase; pur 98.3 4E-06 1.4E-10 83.8 11.5 90 1116-1207 11-106 (141)
24 3r2n_A Cytidine deaminase; str 98.2 3.8E-06 1.3E-10 83.8 9.4 93 1117-1213 10-110 (138)
25 1ctt_A Cytidine deaminase; hyd 97.8 8.1E-05 2.8E-09 82.1 11.5 104 1095-1207 33-140 (294)
26 3mpz_A Cytidine deaminase; ssg 97.7 8.5E-05 2.9E-09 75.3 8.9 89 1117-1207 25-119 (150)
27 1ctt_A Cytidine deaminase; hyd 97.7 0.00015 5E-09 80.1 11.1 91 1117-1208 188-285 (294)
28 3oj6_A Blasticidin-S deaminase 96.9 0.0074 2.5E-07 61.7 12.3 91 1113-1207 27-123 (158)
29 3dmo_A Cytidine deaminase; str 96.2 0.018 6.2E-07 57.7 9.9 91 1116-1207 10-107 (138)
30 4eg2_A Cytidine deaminase; UMP 95.1 0.093 3.2E-06 58.4 10.9 107 1093-1208 34-144 (298)
31 4eg2_A Cytidine deaminase; UMP 93.4 0.3 1E-05 54.4 10.4 89 1118-1207 193-288 (298)
32 3v4k_A DNA DC->DU-editing enzy 88.0 0.4 1.4E-05 51.0 4.6 67 1164-1235 78-156 (203)
33 3vow_A Probable DNA DC->DU-edi 83.3 0.82 2.8E-05 48.3 4.1 75 1161-1235 61-143 (190)
34 2p4g_A Hypothetical protein; p 40.2 14 0.00049 39.6 2.9 34 1285-1318 42-78 (270)
35 1zy7_A RNA-specific adenosine 20.7 2.2E+02 0.0076 33.0 8.3 66 1137-1202 52-159 (403)
No 1
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=100.00 E-value=2.4e-36 Score=308.59 Aligned_cols=154 Identities=41% Similarity=0.737 Sum_probs=142.9
Q ss_pred CchHHHHHHHHHHHHHHHccCCCCCCEEEEEEeCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEe
Q 048747 1113 QQKIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVT 1192 (1319)
Q Consensus 1113 q~~~DE~FMrlAIelA~kS~~sGe~PVGAVIVddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVT 1192 (1319)
...+|+.||++|+.+|+++...++.|||||||++|+||+.|+|.+....+|+.||||+||++|++.++.+.+.+||||||
T Consensus 12 ~~~~d~~~M~~Al~~A~~a~~~g~~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYvT 91 (179)
T 2nx8_A 12 SLEEQTYFMQEALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVT 91 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred CcHHHHHHHHHHHHHHHhccccCCCCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEEC
Confidence 34689999999999999998778999999999999999999999888899999999999999999999999999999999
Q ss_pred CCCcHhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHHHHHHHH
Q 048747 1193 LEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIM 1272 (1319)
Q Consensus 1193 LEPCpMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLeeECadLL 1272 (1319)
+|||+||++||+|+||+||||+..+|..|+.|+++.++...+ +||+++|+.|+|++||.+||
T Consensus 92 lEPC~mCa~ai~~agI~rVv~g~~d~~~g~~g~~~~~l~~~~------------------~~~~~~V~~gvl~~e~~~l~ 153 (179)
T 2nx8_A 92 IEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDER------------------LNHRVQVERGLLAADCANIM 153 (179)
T ss_dssp ECCBHHHHHHHHHTTCCEEEEEECCTTTBTTTTSCCGGGCTT------------------TTCCCEEEECTTHHHHHHHH
T ss_pred CCCcHHHHHHHHHhCCCeEEEEEeCCCCcccccHHHHhhccc------------------cCCCcEEEcCCCHHHHHHHH
Confidence 999999999999999999999999999999998888876544 57889999999999999999
Q ss_pred HHHHHHHHcccc
Q 048747 1273 HQFFQLRRRKKE 1284 (1319)
Q Consensus 1273 q~FFk~rRkKkp 1284 (1319)
+.||.++|.+++
T Consensus 154 ~~f~~~~r~~~~ 165 (179)
T 2nx8_A 154 QTFFRQGRERKK 165 (179)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc
Confidence 999999887665
No 2
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=100.00 E-value=1.6e-35 Score=299.59 Aligned_cols=151 Identities=44% Similarity=0.755 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHHHHHHccCCCCCCEEEEEEeCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEeCC
Q 048747 1115 KIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLE 1194 (1319)
Q Consensus 1115 ~~DE~FMrlAIelA~kS~~sGe~PVGAVIVddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVTLE 1194 (1319)
.+|+.||++|+.+|+++...++.|||||||+||+||+.|+|......+|+.|||++||.+|+..++.+.+.+++||+|+|
T Consensus 7 ~~d~~~M~~A~~~A~~a~~~~~~pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~~~tlYvTlE 86 (168)
T 1z3a_A 7 FSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLE 86 (168)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHhhhcCCCcEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCcccccEEEEcCC
Confidence 45889999999999999877889999999999999999999988889999999999999999998889999999999999
Q ss_pred CcHhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHHHHHHHHHH
Q 048747 1195 PCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQ 1274 (1319)
Q Consensus 1195 PCpMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLeeECadLLq~ 1274 (1319)
||+||++||+|+||+||||+..+|..|+.|+++.+|...+ +||+++|+.|+|++||.+||+.
T Consensus 87 PC~mC~~ai~~agi~rVv~g~~d~~~g~~g~~~~~l~~~~------------------~~~~~~v~~gvl~~e~~~l~~~ 148 (168)
T 1z3a_A 87 PCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPG------------------MNHRVEITEGILADECAALLSD 148 (168)
T ss_dssp CCHHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTT------------------CSSCCEEECCTTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHCcCEEEEEecCCCccccchhHHHhhccc------------------cCCCcEEEcCCCHHHHHHHHHH
Confidence 9999999999999999999999999999888877776443 5788999999999999999999
Q ss_pred HHHHHHccc
Q 048747 1275 FFQLRRRKK 1283 (1319)
Q Consensus 1275 FFk~rRkKk 1283 (1319)
||.+++.++
T Consensus 149 f~~~~r~~~ 157 (168)
T 1z3a_A 149 FFRMRRQEI 157 (168)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhcc
Confidence 999988664
No 3
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=100.00 E-value=2.4e-35 Score=295.29 Aligned_cols=151 Identities=44% Similarity=0.734 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHHHHHHccCCCCCCEEEEEEeCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEeCC
Q 048747 1115 KIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLE 1194 (1319)
Q Consensus 1115 ~~DE~FMrlAIelA~kS~~sGe~PVGAVIVddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVTLE 1194 (1319)
.+|+.||++|+.+|+++...++.|||||||+||+||+.|+|.++...+++.||||+||.+|+..++.+.+.+++||+|+|
T Consensus 5 ~~d~~~m~~A~~~A~~a~~~~~~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyvT~E 84 (159)
T 2b3j_A 5 TNDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLE 84 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHhhcCCCCCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEECCC
Confidence 47899999999999999877899999999999999999999987778999999999999999998889999999999999
Q ss_pred CcHhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHHHHHHHHHH
Q 048747 1195 PCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQ 1274 (1319)
Q Consensus 1195 PCpMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLeeECadLLq~ 1274 (1319)
||+||++||+|+||+||||+..+|..|+.|+++.+|...+ +||+++|+.|+|++||.+||+.
T Consensus 85 PC~mC~~ai~~agi~rVv~~~~~~~~~~~g~~~~~l~~~~------------------~~~~~~v~~gvl~~e~~~l~~~ 146 (159)
T 2b3j_A 85 PCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSN------------------FNHRAIVDKGVLKEACSTLLTT 146 (159)
T ss_dssp CCHHHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSCTT------------------SSCCCEEECCTTHHHHHHHHHH
T ss_pred CcHHHHHHHHHhCCCeEEEEeeCCCcccccHHHHHHhccc------------------cCCCCEEEcCCCHHHHHHHHHH
Confidence 9999999999999999999999999998887777765433 5788999999999999999999
Q ss_pred HHHHHHccc
Q 048747 1275 FFQLRRRKK 1283 (1319)
Q Consensus 1275 FFk~rRkKk 1283 (1319)
||.++|+++
T Consensus 147 f~~~~r~~~ 155 (159)
T 2b3j_A 147 FFKNLRANK 155 (159)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcc
Confidence 999877654
No 4
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.7e-35 Score=302.41 Aligned_cols=155 Identities=28% Similarity=0.480 Sum_probs=131.4
Q ss_pred chHHHHHHHHHHHHHHHccCCCCCCEEEEEEeCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcC------CccCCCc
Q 048747 1114 QKIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLR------TWRLADA 1187 (1319)
Q Consensus 1114 ~~~DE~FMrlAIelA~kS~~sGe~PVGAVIVddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~------~ylLtG~ 1187 (1319)
...|+.||++|+.+|+++...++.|||||||++|+||+.|+|.+....+++.||||+||++|++... .+.+.||
T Consensus 23 ~~~d~~~M~~Al~lA~~a~~~~~~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~~~~~~~~~l~g~ 102 (189)
T 3dh1_A 23 MEETEKWMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVFEHT 102 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHCCCHHHHHTTE
T ss_pred hHHHHHHHHHHHHHHHHhhhCCCCCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhhcCcccccccCCe
Confidence 4678999999999999998778999999999999999999998877899999999999999987532 2458999
Q ss_pred EEEEeCCCcHhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHHH
Q 048747 1188 TLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAE 1267 (1319)
Q Consensus 1188 TLYVTLEPCpMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLeeE 1267 (1319)
|||||+|||+||++||+|+||+||||+..+|..|+.|+.+.++.. .....+|+++|..|+|++|
T Consensus 103 tLYvTlEPC~mCa~Aii~agI~rVVyg~~~p~~gg~g~~~~~~~~----------------~l~~~gh~ieV~~Gvl~~e 166 (189)
T 3dh1_A 103 VLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASA----------------DLPNTGRPFQCIPGYRAEE 166 (189)
T ss_dssp EEEEEECCBHHHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTTC----------------CCTTSSCCCEEECCTTHHH
T ss_pred EEEEeCCChHHHHHHHHHhCCCEEEEEecCCCcccccccccchhh----------------HHHHcCCCeEEEeCccHHH
Confidence 999999999999999999999999999999999988876665421 1123578899999999999
Q ss_pred HHHHHHHHHHHHHcccc
Q 048747 1268 CADIMHQFFQLRRRKKE 1284 (1319)
Q Consensus 1268 CadLLq~FFk~rRkKkp 1284 (1319)
|.+||+.||.+++.+.|
T Consensus 167 ~~~Ll~~Ff~~~~~~~P 183 (189)
T 3dh1_A 167 AVEMLKTFYKQENPNAP 183 (189)
T ss_dssp HHHHHHHHTCC------
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999999988776655
No 5
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=100.00 E-value=3.7e-34 Score=281.78 Aligned_cols=142 Identities=46% Similarity=0.647 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCEEEEEEeCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEeCCC
Q 048747 1116 IDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEP 1195 (1319)
Q Consensus 1116 ~DE~FMrlAIelA~kS~~sGe~PVGAVIVddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVTLEP 1195 (1319)
+|+.||++|+.+|+++...++.|||||||+||+||+.|+|..+...+|+.||||+||.+|+..++.+.+.+++||+|+||
T Consensus 3 ~d~~~m~~A~~~A~~a~~~~~~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~T~eP 82 (144)
T 2a8n_A 3 ERTHFMELALVEARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYVTLEP 82 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEEEECC
T ss_pred hHHHHHHHHHHHHHHhhcCCCCCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEECCCC
Confidence 68899999999999998778999999999999999999999888899999999999999999888899999999999999
Q ss_pred cHhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHHHHHHHHHHH
Q 048747 1196 CPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQF 1275 (1319)
Q Consensus 1196 CpMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLeeECadLLq~F 1275 (1319)
|+||++||+|+||+||||+.++|..|+.|+++.+|...+ +||+++|+.|++++||.+||+.|
T Consensus 83 C~mC~~ai~~~~i~rvv~~~~~~~~~~~g~~~~~~~~~~------------------~~~~~~v~~gvl~~e~~~l~~~f 144 (144)
T 2a8n_A 83 CTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPT------------------CHHAPDVYSGLAESESAEILRQF 144 (144)
T ss_dssp BHHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTT------------------CCCCCEEEEC-------------
T ss_pred hHHHHHHHHHHCCCEEEEeecCCCccccchHHHHHhccc------------------cCCCcEEEeCCCHHHHHHHHhcC
Confidence 999999999999999999999999999998888776433 57899999999999999999987
No 6
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=100.00 E-value=6.7e-34 Score=289.02 Aligned_cols=148 Identities=36% Similarity=0.583 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCEEEEEEeCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEeCCC
Q 048747 1116 IDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEP 1195 (1319)
Q Consensus 1116 ~DE~FMrlAIelA~kS~~sGe~PVGAVIVddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVTLEP 1195 (1319)
+|+.||++|+.+|+++...++.|||||||+||+||+.|+|.++...+|+.|||++||.+|+..++.+.+.+++||+|+||
T Consensus 22 ~~~~~M~~A~~~A~~a~~~~~~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYvT~EP 101 (171)
T 1wwr_A 22 GKEYFLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEP 101 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEESSCC
T ss_pred hHHHHHHHHHHHHHhcccCCCCCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEECCCC
Confidence 47899999999999998778999999999999999999999888899999999999999999888899999999999999
Q ss_pred cHhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHHHHHHHHHHH
Q 048747 1196 CPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQF 1275 (1319)
Q Consensus 1196 CpMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLeeECadLLq~F 1275 (1319)
|+||++||+|+||+||||+.++|..|+.|+.+.++...+ +||.++|+. ++++||.+||+.|
T Consensus 102 C~mC~~ai~~agi~rVv~~~~d~~~g~~g~~~~~l~~~~------------------~~~~i~V~~-vl~~e~~~ll~~f 162 (171)
T 1wwr_A 102 CIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPT------------------LNHRVKWEY-YPLEEASELLSEF 162 (171)
T ss_dssp BHHHHHHHHHTTCSEEEESSCCTTTBTTTTSCCGGGCTT------------------CSSCCEEEE-CCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEEEEecCCCccccchHHHHHhccc------------------cCCCcEEEE-ecHHHHHHHHHHH
Confidence 999999999999999999999999998888777776433 578899999 9999999999999
Q ss_pred HHHHHcc
Q 048747 1276 FQLRRRK 1282 (1319)
Q Consensus 1276 Fk~rRkK 1282 (1319)
|.++|++
T Consensus 163 ~~~~r~~ 169 (171)
T 1wwr_A 163 FKKLRNN 169 (171)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9987754
No 7
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=100.00 E-value=4e-34 Score=295.62 Aligned_cols=174 Identities=24% Similarity=0.249 Sum_probs=139.2
Q ss_pred HHHHHHHHccCCccCchHHHHHHHHHHHHHHHccCCCCCCEEEEEEe-C-CeEEEEEEccCcccCCCCCcHHHHHHHHHH
Q 048747 1099 RFDEWEEAYKLESAQQKIDDMFMREALLEAKKAADTWEVPVGAVLVQ-H-GKIIARGCNLVEELRDSTAHAEMICIRAAS 1176 (1319)
Q Consensus 1099 Q~~EWse~wp~~~eq~~~DE~FMrlAIelA~kS~~sGe~PVGAVIVd-d-GKIIA~GyN~t~~~~dpt~HAEMnAIreAa 1176 (1319)
.++.|...+...+....+|+.||++|+.+|+++...++.|||||||+ + |+||+.|+|.+....+++.||||+||++|+
T Consensus 10 ~lp~w~~~~~~~~~~~~~d~~~M~~Al~~A~~a~~~~~~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~ 89 (197)
T 2g84_A 10 GLPPFLVQANNEPRVLAAPEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQ 89 (197)
T ss_dssp ECCHHHHHHHHSCCBCCSHHHHHHHHHHHHHHHHHTTCCSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHH
T ss_pred cCchhHHHhccCCcCCHHHHHHHHHHHHHHHhhhhcCCCCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHH
Confidence 45567665544455567899999999999999986568999999998 8 999999999988889999999999999999
Q ss_pred hHcCCccC-----CCcEEEEeCCCcHhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCC
Q 048747 1177 NVLRTWRL-----ADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVH 1251 (1319)
Q Consensus 1177 rkl~~ylL-----tG~TLYVTLEPCpMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~ 1251 (1319)
++++.+.| .|||||||+|||+||++||+|+||+||||+..+|..|+.| +..+. + +.....
T Consensus 90 ~~~~~~~L~~~~~~g~tlYvTlEPC~mCa~Aii~agI~rVv~g~~d~~~~~~G--~~~~~---~----------~~~~~~ 154 (197)
T 2g84_A 90 AKLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIG--FDEGP---R----------PENWMG 154 (197)
T ss_dssp HHHTCSCTTCTTSCCEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTT--CCCCC---C----------CTTHHH
T ss_pred HHcCCccccccCcCCEEEEEeCCCCHHHHHHHHHhCcCEEEEEecCCCccccC--ccccc---c----------hhHHHH
Confidence 98877764 5699999999999999999999999999999999877654 21110 0 000000
Q ss_pred C-CCCCceEEccccHHHHHHHHHHHHHHHHcccccccCC
Q 048747 1252 P-FHPKMTIRRGVLAAECADIMHQFFQLRRRKKEKIADD 1289 (1319)
Q Consensus 1252 ~-LNhkfeV~~GVLeeECadLLq~FFk~rRkKkpk~~Dg 1289 (1319)
. .++.++|..|++++||.+||+.||.. .+.++..+.
T Consensus 155 ~l~~~~i~V~~gvl~~e~~~ll~~f~~~--~~~~y~~~~ 191 (197)
T 2g84_A 155 GLEARGITVTTGLLRDAACALLREYNAC--NGVIYNARC 191 (197)
T ss_dssp HHHHTTCEEECCTTHHHHHHHHHHHHHH--CSSSCCTTC
T ss_pred HHhcCCCEEEecCCHHHHHHHHHHHHHc--CCCCCCCCC
Confidence 1 25678999999999999999999964 355666654
No 8
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=100.00 E-value=1.6e-32 Score=305.47 Aligned_cols=173 Identities=25% Similarity=0.418 Sum_probs=154.9
Q ss_pred hHHHHHHHHHHHHHHHccC--CCCCCEEEEEEeCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEe
Q 048747 1115 KIDDMFMREALLEAKKAAD--TWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVT 1192 (1319)
Q Consensus 1115 ~~DE~FMrlAIelA~kS~~--sGe~PVGAVIVddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVT 1192 (1319)
..|+.||++|+.+|+++.. .++.|||||||+||+||+.|||. ..++.||||+||++|+. .+.|||||||
T Consensus 12 ~~~~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~----~~~~~HAE~~Ai~~a~~-----~~~g~tlyvT 82 (373)
T 2b3z_A 12 SMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHL----KYGEAHAEVHAIHMAGA-----HAEGADIYVT 82 (373)
T ss_dssp -CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECC----STTSCCHHHHHHHHHGG-----GGTTCEEEES
T ss_pred chHHHHHHHHHHHHHhhCcccCCCCcEEEEEEECCEEEEEEeCC----CCCCcCHHHHHHHHhhH-----hcCCeEEEEe
Confidence 4578999999999999874 46888999999999999999998 56899999999999975 4689999999
Q ss_pred CCCc------HhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHH
Q 048747 1193 LEPC------PMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAA 1266 (1319)
Q Consensus 1193 LEPC------pMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLee 1266 (1319)
+||| +||++||+++||+||||+..+|..+..|.++.+|.+.|| +|..|+|++
T Consensus 83 lePC~~~G~t~~C~~ai~~agi~rVv~~~~d~~~~~~g~~~~~l~~~gi----------------------~v~~g~l~~ 140 (373)
T 2b3z_A 83 LEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGI----------------------EVREGILAD 140 (373)
T ss_dssp SCCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHHTTTC----------------------EEEECTTHH
T ss_pred CCCccCcCCChHHHHHHHHhCCCEEEEEecccchhhhhHHHHHHHhCCe----------------------EEEeCCccc
Confidence 9999 899999999999999999999988888888999887775 899999999
Q ss_pred HHHHHHHHHHHHHHcccc-------cccCC---CCCCCCccccCHHHHH-HHHHhhhcceeec
Q 048747 1267 ECADIMHQFFQLRRRKKE-------KIADD---LPPPSCVPIVNQQSKI-LTKMRHMFHMMFC 1318 (1319)
Q Consensus 1267 ECadLLq~FFk~rRkKkp-------k~~Dg---~~~~~s~~Is~~qSk~-lhkmR~~~dai~c 1318 (1319)
||.+|++.||.+++.++| .++|| ..++.+.||++..++. +|+||+.+|+|+.
T Consensus 141 e~~~l~~~f~~~~~~~rP~V~lk~A~SLDG~Ia~~~G~~~Wit~~~~~~~~~~lr~~~daILv 203 (373)
T 2b3z_A 141 QAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYRKTHQSILV 203 (373)
T ss_dssp HHHHHTHHHHHHHHHSSCEEEEEEEEETTSBSSCTTSCCTTSSCHHHHHHHTTHHHHSSEEEE
T ss_pred ccccccceeeeeccccchhheeeeeecCCCceeccCCCccccCCHHHHHHHHHHHHHCCEEEE
Confidence 999999999999998887 45687 4567789999999887 5999999999974
No 9
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=99.98 E-value=2.9e-33 Score=282.69 Aligned_cols=146 Identities=31% Similarity=0.447 Sum_probs=130.0
Q ss_pred chHHHHHHHHHHHHHHHccCCC-CCCEEEEEEeCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEe
Q 048747 1114 QKIDDMFMREALLEAKKAADTW-EVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVT 1192 (1319)
Q Consensus 1114 ~~~DE~FMrlAIelA~kS~~sG-e~PVGAVIVddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVT 1192 (1319)
...|+.||++|+.+|+++...+ +.|||||||++|+||+.|+|.+....+|+.||||+||++|++.++.+.+.+||||+|
T Consensus 8 ~~~~~~~M~~Al~~A~~a~~~g~~~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYvT 87 (164)
T 1wkq_A 8 AMNHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTS 87 (164)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEEe
Confidence 4568899999999999998777 899999999999999999999888889999999999999999988999999999999
Q ss_pred CCCcHhHHHHHHHcCcCeEEecCCCccCCcCc----chhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHHHH
Q 048747 1193 LEPCPMCAGAILQARVSTLVWGAPNKLLGADG----SWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAEC 1268 (1319)
Q Consensus 1193 LEPCpMCAmAIVhSGIkRVVYGapdp~~Gg~G----SgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLeeEC 1268 (1319)
+|||+||++||+|+||+||||+.+++..|+.| +.+.++... .+++.+.| .|++++||
T Consensus 88 ~EPC~mCa~ai~~agI~rVv~g~~~~~~~~~gf~~~~~~~~~~~~------------------~~~~~~~v-~gv~~~e~ 148 (164)
T 1wkq_A 88 CEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKP------------------AEERTIPF-YQVTLTEH 148 (164)
T ss_dssp ECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHTSC------------------GGGSSSCE-EECCCTTT
T ss_pred CCChHHHHHHHHHHCCCEEEEEEcCCCccccCcchHHHHHHhcch------------------hhcCCeEE-EecCHHHH
Confidence 99999999999999999999999999988877 666665321 13556666 67999999
Q ss_pred HHHHHHHHHH
Q 048747 1269 ADIMHQFFQL 1278 (1319)
Q Consensus 1269 adLLq~FFk~ 1278 (1319)
.+||+.||.+
T Consensus 149 ~~ll~~f~~~ 158 (164)
T 1wkq_A 149 LSPFQAWRNF 158 (164)
T ss_dssp THHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999999954
No 10
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=99.97 E-value=6.2e-32 Score=303.71 Aligned_cols=174 Identities=26% Similarity=0.390 Sum_probs=153.2
Q ss_pred chHHHHHHHHHHHHHHHccC--CCCCCEEEEEEeCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEE
Q 048747 1114 QKIDDMFMREALLEAKKAAD--TWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYV 1191 (1319)
Q Consensus 1114 ~~~DE~FMrlAIelA~kS~~--sGe~PVGAVIVddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYV 1191 (1319)
..+|++||++|+.+|+++.. .++.|||||||++|+||+.|||. ..++.||||+||.+|+.. +.||||||
T Consensus 27 ~~~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~----~~g~~HAE~~Ai~~a~~~-----~~g~tlyv 97 (402)
T 2g6v_A 27 QGQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQ----RAGEPHAEVHALRMAGEK-----AKGATAYV 97 (402)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEEETTEEEEEEECC----CTTSCCHHHHHHHHHGGG-----GGSSCEEE
T ss_pred CHHHHHHHHHHHHHHHhhCccCCCCCCEEEEEEECCEEEEEEeCC----CCCccHHHHHHHHHhhHh-----cCCeEEEE
Confidence 45789999999999999873 46788999999999999999998 468999999999999764 58999999
Q ss_pred eCCCc------HhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccH
Q 048747 1192 TLEPC------PMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLA 1265 (1319)
Q Consensus 1192 TLEPC------pMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLe 1265 (1319)
|+||| |||++||+|+||+||||+..+|..+..|.++.+|.++|| +|..|+|+
T Consensus 98 t~ePC~h~G~tp~C~~ai~~agi~rVv~~~~~~~~~~~g~g~~~l~~~gi----------------------~v~~g~l~ 155 (402)
T 2g6v_A 98 TLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGI----------------------DVSHGLMM 155 (402)
T ss_dssp SSCCC-------CCHHHHHHTTCSCEEESSCCCSCSSSTTHHHHHHHTTC----------------------CEEECTTT
T ss_pred eCCCcCCCCCchHHHHHHHHhCCCEEEEEecCCCccccchHHHHHHhCCc----------------------EEEeCCcc
Confidence 99999 799999999999999999998887777888888888876 78899999
Q ss_pred HHHHHHHHHHHHHHHcccc-------cccCC---CCCCCCccccCHHHHH-HHHHhhhcceeec
Q 048747 1266 AECADIMHQFFQLRRRKKE-------KIADD---LPPPSCVPIVNQQSKI-LTKMRHMFHMMFC 1318 (1319)
Q Consensus 1266 eECadLLq~FFk~rRkKkp-------k~~Dg---~~~~~s~~Is~~qSk~-lhkmR~~~dai~c 1318 (1319)
+||.+|++.||.+++.++| .++|| ..++.+.||++..++. +|++|+.+|||+.
T Consensus 156 ~e~~~l~~~f~~~~~~~rP~V~~k~A~SLDG~IA~~~G~s~Wit~~~~r~~~~~lra~~DAILv 219 (402)
T 2g6v_A 156 SEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQSHAILT 219 (402)
T ss_dssp THHHHHTHHHHHHHHSSSCEEEEEEEECTTCBBCC---CCSCSSCHHHHHHHHHHHHHCSEEEE
T ss_pred hhhHHHhhhhhhccccccchheeeeeecCCCCCccCCCCcCCcCCHHHHHHHHHHHHhCCEEEE
Confidence 9999999999999998887 45788 4566789999999888 5999999999974
No 11
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=99.97 E-value=1.1e-31 Score=297.68 Aligned_cols=172 Identities=30% Similarity=0.454 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHHHccC--CCCCCEEEEEEeCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEeCC
Q 048747 1117 DDMFMREALLEAKKAAD--TWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLE 1194 (1319)
Q Consensus 1117 DE~FMrlAIelA~kS~~--sGe~PVGAVIVddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVTLE 1194 (1319)
...||++|+.+|+++.. .++.|||||||+||+||+.|||. .+++.||||+||++|++ .+..+.|||||||+|
T Consensus 14 ~~~~m~~al~lA~~~~~~~~~~~~vGaviv~~g~ii~~g~n~----~~~~~HAE~~Ai~~a~~--~~~~~~g~tlYvTlE 87 (360)
T 2hxv_A 14 YETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHP----YFGGPHAERMAIESARK--KGEDLRGATLIVTLE 87 (360)
T ss_dssp HHHHHHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECC----STTSCCHHHHHHHHHHH--TTCCCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhccccCCCCCEEEEEEECCEEEEEEeCC----CCCCcCHHHHHHHHHHh--cCCCcCCcEEEEecC
Confidence 45799999999999874 36888999999999999999998 56899999999999975 245789999999999
Q ss_pred Cc------HhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHHHH
Q 048747 1195 PC------PMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAEC 1268 (1319)
Q Consensus 1195 PC------pMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLeeEC 1268 (1319)
|| |||++||+++||+||||+..+|.. ..|.++.+|.+.|| +|..|+|++||
T Consensus 88 PC~h~g~t~~C~~ai~~agi~rVv~~~~d~~~-~~g~g~~~l~~~gi----------------------~v~~g~l~~e~ 144 (360)
T 2hxv_A 88 PCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGI----------------------EVIEGVLEEEV 144 (360)
T ss_dssp CCCSCSSSCCHHHHHHHHTCCEEEEEECCCCG-GGCCHHHHHHTTTC----------------------EEEECTTHHHH
T ss_pred cccccCCCHHHHHHHHHhCCCEEEEEecCchh-hhhhHHHHHHhCCc----------------------EEEECCccccc
Confidence 99 799999999999999999988877 67778888887775 88999999999
Q ss_pred HHHHHHHHHHHHcccc-------cccCC---CCCCCCccccCHHHHH-HHHHhhhcceeec
Q 048747 1269 ADIMHQFFQLRRRKKE-------KIADD---LPPPSCVPIVNQQSKI-LTKMRHMFHMMFC 1318 (1319)
Q Consensus 1269 adLLq~FFk~rRkKkp-------k~~Dg---~~~~~s~~Is~~qSk~-lhkmR~~~dai~c 1318 (1319)
.+|++.||.+++.++| .++|| ..++.+.||+ ..++. +|.+|+.+|||+.
T Consensus 145 ~~l~~~f~~~~~~~rP~V~lk~A~SLDG~IA~~~G~s~Wit-~~~~~~~~~lr~~~DAILv 204 (360)
T 2hxv_A 145 KKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWIT-DKLRFKVHEMRNIYSAVLV 204 (360)
T ss_dssp HHHTHHHHHHHHHSSCEEEEEEEEETTSEEECTTSCCTTSC-STTHHHHHHHHHHSSEEEE
T ss_pred hhccceeeeccccchhhheeehhhccCCcccCCCCCcccCC-HHHHHHHHHHHHHCCEEEE
Confidence 9999999999888877 45788 5667889999 77777 5999999999974
No 12
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=99.97 E-value=1.9e-31 Score=267.99 Aligned_cols=147 Identities=28% Similarity=0.416 Sum_probs=126.1
Q ss_pred chHHHHHHHHHHHHHHHccCCCCCCEEEEEE--eCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEE
Q 048747 1114 QKIDDMFMREALLEAKKAADTWEVPVGAVLV--QHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYV 1191 (1319)
Q Consensus 1114 ~~~DE~FMrlAIelA~kS~~sGe~PVGAVIV--ddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYV 1191 (1319)
..+|+.||++|+.+|+++...++.||||||| .+|+||+.|+|.+....+|+.||||+||.+|++. +.+.+.++|||+
T Consensus 11 ~~~d~~~M~~A~~~A~~a~~~~~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~~-~~~~~~~~tlYv 89 (161)
T 1p6o_A 11 SKWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRL-EGKVYKDTTLYT 89 (161)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSC-CHHHHTTEEEEE
T ss_pred CHHHHHHHHHHHHHHHhhhccCCCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHHh-CCcccccccccc
Confidence 4678999999999999998777899999999 6999999999998777899999999999999864 234678999999
Q ss_pred eCCCcHhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHHHHHHH
Q 048747 1192 TLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADI 1271 (1319)
Q Consensus 1192 TLEPCpMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLeeECadL 1271 (1319)
|+|||+||++||+|+||+||||+.++|..| +++.+|...|| +|.. ++++||.+|
T Consensus 90 T~EPC~mC~~ai~~agi~rVv~g~~~~~~g---~~~~~l~~~gi----------------------~v~~-~~~~e~~~l 143 (161)
T 1p6o_A 90 TLSPCDMCTGAIIMYGIPRCVVGENVNFKS---KGEKYLQTRGH----------------------EVVV-VDDERCKKI 143 (161)
T ss_dssp EECCCHHHHHHHHHHTCCEEEEEESSSCCC---THHHHHHHTTC----------------------EEEE-CCCHHHHHH
T ss_pred CCCCCHHHHHHHHHhCCCEEEEEecCCCCc---cHHHHHHhcCC----------------------EEEE-ecHHHHHHH
Confidence 999999999999999999999999998754 45677765554 7776 899999999
Q ss_pred HHHHHHHHHcccccccCC
Q 048747 1272 MHQFFQLRRRKKEKIADD 1289 (1319)
Q Consensus 1272 Lq~FFk~rRkKkpk~~Dg 1289 (1319)
|+.||.+ ++..|.+|.
T Consensus 144 ~~~f~~~--~r~~~~~d~ 159 (161)
T 1p6o_A 144 MKQFIDE--RPQDWFEDI 159 (161)
T ss_dssp HHHHHHH--CHHHHHHHT
T ss_pred HHHHHHh--Chhhhhhhc
Confidence 9999965 444566653
No 13
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=99.94 E-value=2.1e-27 Score=243.69 Aligned_cols=115 Identities=30% Similarity=0.416 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCEEEEEEeCCeEEEEEEccCcccC----------------------------------
Q 048747 1116 IDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELR---------------------------------- 1161 (1319)
Q Consensus 1116 ~DE~FMrlAIelA~kS~~sGe~PVGAVIVddGKIIA~GyN~t~~~~---------------------------------- 1161 (1319)
+|++||.+|+.+|+++.+ ++.|||||||++|+||++|||.++...
T Consensus 2 ~d~~fM~~A~~~A~rs~~-~~~~VGAVIV~dg~Iia~G~N~~~~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (193)
T 1vq2_A 2 KASTVLQIAYLVSQESKC-CSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGS 80 (193)
T ss_dssp CHHHHHHHHHHHHTTCCC-SSBCCEEEEEETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC------------------
T ss_pred CHHHHHHHHHHHHHhcCC-CCCCEEEEEEECCEEEEEEeCCCCCCCCCcchhhccccccccccccccccccccccccccc
Confidence 478999999999999975 689999999999999999999976421
Q ss_pred -------------------CCCCcHHHHHHHHHHhHcCCccCCCcEEEEeCCCcHhHHHHHHHcCcCeEEecCCCccCCc
Q 048747 1162 -------------------DSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGA 1222 (1319)
Q Consensus 1162 -------------------dpt~HAEMnAIreAarkl~~ylLtG~TLYVTLEPCpMCAmAIVhSGIkRVVYGapdp~~Gg 1222 (1319)
+++.||||+||.+|++.. +.+.|+|||||+|||+||++||+++||+||||+.++|..+
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~HAE~~AI~~a~~~g--~~~~g~tLYvT~ePC~~Ca~aIi~aGI~rVvy~~~~~~~~- 157 (193)
T 1vq2_A 81 TDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENG--SSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNK- 157 (193)
T ss_dssp --CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHHT--CCCTTCEEEEEECCCHHHHHHHHHHTCCEEEEEECCTTCC-
T ss_pred ccccccchhhccccccccCCCCCCHHHHHHHHHHhcC--CCcCCeEEEEeCCCcHHHHHHHHHhCCCEEEEecCCCCcc-
Confidence 248899999999998863 6789999999999999999999999999999999998765
Q ss_pred CcchhhccccCCC
Q 048747 1223 DGSWVRLFPDGGE 1235 (1319)
Q Consensus 1223 ~GSgirLL~eaGI 1235 (1319)
+.++.+|.+.||
T Consensus 158 -~~~~~~l~~aGI 169 (193)
T 1vq2_A 158 -PGWDDILRNAGI 169 (193)
T ss_dssp -TTTTHHHHHTTC
T ss_pred -hHHHHHHHHCCC
Confidence 445788998887
No 14
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=99.93 E-value=3.4e-26 Score=235.21 Aligned_cols=119 Identities=29% Similarity=0.353 Sum_probs=103.6
Q ss_pred ccCchHHHHHHHHHHHHHHHccCCCCCCEEEEEEeCCeEEEEEEccCccc---------------CCCCCcHHHHHHHHH
Q 048747 1111 SAQQKIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEEL---------------RDSTAHAEMICIRAA 1175 (1319)
Q Consensus 1111 ~eq~~~DE~FMrlAIelA~kS~~sGe~PVGAVIVddGKIIA~GyN~t~~~---------------~dpt~HAEMnAIreA 1175 (1319)
...+.+|++||++|+.+|+++. .++.|||||||+||+||+.|+|.+... .+++.|||++||.+|
T Consensus 36 ~~~~~~de~~M~~A~~~A~~s~-~~~~~VGAVIV~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A 114 (184)
T 2hvw_A 36 TNRLSWQDYFMANAELISKRST-CNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQC 114 (184)
T ss_dssp -CCCCHHHHHHHHHHHHGGGCC-CTTCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEECCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHH
Confidence 3456799999999999999987 478999999999999999999986432 267999999999999
Q ss_pred HhHcCCccCCCcEEEEeCCCcHhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCC
Q 048747 1176 SNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGE 1235 (1319)
Q Consensus 1176 arkl~~ylLtG~TLYVTLEPCpMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI 1235 (1319)
++. .+.+.++|||+|+|||+||++||+|+||+||||+.++|... .++.+|+++||
T Consensus 115 ~~~--g~~l~g~tlYvTlEPC~mCa~aIi~agI~rVVy~~~~~~~~---~~~~~L~~aGI 169 (184)
T 2hvw_A 115 AKE--GISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHP---FAIELMTQKEV 169 (184)
T ss_dssp HHH--TCCCTTEEEEEEECCCHHHHHHHHHHTEEEEEEEECCSCCH---HHHHHHHHHTC
T ss_pred HHc--CCCceeEEEEECCCCHHHHHHHHHHHCCCeEEEEecCCCCH---HHHHHHHHCCC
Confidence 876 35789999999999999999999999999999999887542 24788999997
No 15
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.92 E-value=4e-27 Score=240.60 Aligned_cols=118 Identities=26% Similarity=0.367 Sum_probs=96.3
Q ss_pred ccCchHHHHHHHHHHHHHHHccCCCCCCEEEEEE-eCCeEEEEEEccCccc------------CC-------CCCcHHHH
Q 048747 1111 SAQQKIDDMFMREALLEAKKAADTWEVPVGAVLV-QHGKIIARGCNLVEEL------------RD-------STAHAEMI 1170 (1319)
Q Consensus 1111 ~eq~~~DE~FMrlAIelA~kS~~sGe~PVGAVIV-ddGKIIA~GyN~t~~~------------~d-------pt~HAEMn 1170 (1319)
...+.||++||.+|+.+|+++.+ .+.||||||| .+|+||+.|||..... .+ .+.|||++
T Consensus 7 ~~~~~~d~~~M~~A~~~A~~s~~-p~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE~~ 85 (178)
T 2w4l_A 7 DDYLEWPEYFMAVAFLSAQRSKD-PNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELN 85 (178)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCCC-SSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHHHH
Confidence 44678999999999999999975 4889999999 5999999999986421 23 37999999
Q ss_pred HHHHHHhHcCCccCCCcEEEEeCCCcHhHHHHHHHcCcCeEEecCC---CccCCcCcchhhccccCCC
Q 048747 1171 CIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAP---NKLLGADGSWVRLFPDGGE 1235 (1319)
Q Consensus 1171 AIreAarkl~~ylLtG~TLYVTLEPCpMCAmAIVhSGIkRVVYGap---dp~~Gg~GSgirLL~eaGI 1235 (1319)
||.+|+ ++.+.|+|||||+|||+||++||+++||+||||+.. ++.. ...++.+|.++||
T Consensus 86 AI~~a~----g~~~~g~tlYvTlePC~~Ca~aIi~agI~rVVy~~~~~~d~~~--~~~~~~~L~~aGI 147 (178)
T 2w4l_A 86 AIMNKN----LTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDE--ATAARLLFNMAGV 147 (178)
T ss_dssp HHHC--------CCTTCEEEEEECCCHHHHHHHHHTTCCEEEEEECTTTTSHH--HHHHHHHHHHHTC
T ss_pred HHHHhc----CCCccccEEEEeCCcHHHHHHHHHHHCCCEEEEEeccCCCCcc--hHHHHHHHHHCCC
Confidence 999975 357899999999999999999999999999999976 3322 1125788998987
No 16
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=99.79 E-value=3.8e-20 Score=196.48 Aligned_cols=89 Identities=25% Similarity=0.354 Sum_probs=74.8
Q ss_pred HHHccCCCCCCEEEEEEeCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEeCCCcHhHHHHHHHcC
Q 048747 1128 AKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQAR 1207 (1319)
Q Consensus 1128 A~kS~~sGe~PVGAVIVddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVTLEPCpMCAmAIVhSG 1207 (1319)
++.....++.|||||||++|+||+.|. +++.||||+||+ ...+.|||||+|+|||+||++||+|+|
T Consensus 13 ~k~~~t~PNPpVGAVIVkDGeIIA~Ge-------~gTaHAEInAIr-------g~~L~GaTLYVTLEPC~MCAgAII~AG 78 (278)
T 3g8q_A 13 KKILNEIPKRTVTAALLEGGEIVAVEE-------ADDEHAERKLVR-------RHDVEGKVVFVTARPCLYCARELAEAG 78 (278)
T ss_dssp HHHHHHSCCSSCEEEEEETTEEEEEEE-------CSSSCHHHHHHH-------HSCCTTCEEEESSCCCHHHHHHHHTTT
T ss_pred hHHhccCCCCCEEEEEEECCEEEEecC-------CCCCCHHHHHhC-------CCCCCCcEEEEeCCchHHHHHHHHHhC
Confidence 333334578889999999999999992 299999999997 346789999999999999999999999
Q ss_pred cCeEEecCCCccCCcCcchhhccccCCC
Q 048747 1208 VSTLVWGAPNKLLGADGSWVRLFPDGGE 1235 (1319)
Q Consensus 1208 IkRVVYGapdp~~Gg~GSgirLL~eaGI 1235 (1319)
|+||||+..+. +.+..+|.++||
T Consensus 79 IkRVVYGa~~~-----G~G~e~LreAGI 101 (278)
T 3g8q_A 79 VAGVVYLGRGR-----GLGPYYLARSGV 101 (278)
T ss_dssp CCEEEEEECSS-----CCHHHHHHTTTC
T ss_pred CCEEEEEecCC-----ChhHHHHHHCCC
Confidence 99999999753 335677888887
No 17
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=99.65 E-value=4e-16 Score=161.69 Aligned_cols=97 Identities=18% Similarity=0.199 Sum_probs=77.2
Q ss_pred CCCEEEEEEe--C---CeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEeCCCcHhHHHHHHHc----
Q 048747 1136 EVPVGAVLVQ--H---GKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQA---- 1206 (1319)
Q Consensus 1136 e~PVGAVIVd--d---GKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVTLEPCpMCAmAIVhS---- 1206 (1319)
+..+.|..|. + +.||+.|+|.. .+++.||||+||.+|+..++.....++|||||+|||+||+.||+++
T Consensus 32 ~~tyLcy~v~~~~~~~~~ii~~G~~~~---~~~~~HAE~~Ai~~a~~~l~~~~~~g~TlYvTlePC~~Ca~aIi~al~~~ 108 (190)
T 2nyt_A 32 NKTFLCYVVEAQGKGGQVQASRGYLED---EHAAAHAEEAFFNTILPAFDPALRYNVTWYVSSSPCAACADRIIKTLSKT 108 (190)
T ss_pred CceEEEEEEEecCCCCCCeEEEEECCC---CCCCcCHHHHHHHHHHHhcCccccCCeEEEEEcChHHHHHHHHHHhhhhc
Confidence 4458888886 2 56999999972 4799999999999998766444444999999999999999999999
Q ss_pred -CcCeEEecCCCccC--CcCcchhhccccCCC
Q 048747 1207 -RVSTLVWGAPNKLL--GADGSWVRLFPDGGE 1235 (1319)
Q Consensus 1207 -GIkRVVYGapdp~~--Gg~GSgirLL~eaGI 1235 (1319)
||++|||+..++.. -....++.+|.++||
T Consensus 109 ~gI~rVV~~~~d~~~~~p~~~~g~~~L~~aGI 140 (190)
T 2nyt_A 109 KNLRLLILVGRLFMWEEPEIQAALKKLKEAGC 140 (190)
T ss_pred CCccEEEEEeecCCcCChHHHHHHHHHHHCCC
Confidence 99999999765421 001246788888887
No 18
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=99.33 E-value=4.3e-12 Score=125.23 Aligned_cols=89 Identities=24% Similarity=0.331 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHccCC-CCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEe--
Q 048747 1117 DDMFMREALLEAKKAADT-WEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVT-- 1192 (1319)
Q Consensus 1117 DE~FMrlAIelA~kS~~s-Ge~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVT-- 1192 (1319)
++.+|..|+.++.++... ++.||||+|+. ||+|+ .|+|..+...+++.|||+.||..|... +.+.+..++||++
T Consensus 3 ~~~l~~~A~~aa~~ayapYs~~~VGAal~~~dG~i~-~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~~ 80 (136)
T 1uwz_A 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADTP 80 (136)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESCS
T ss_pred HHHHHHHHHHHHHhccCccCCCCEEEEEEeCCCeEE-EEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCCC
Confidence 567999999999998875 78999999996 99999 799987777889999999999999987 6678899999996
Q ss_pred --CCCcHhHHHHHHHcC
Q 048747 1193 --LEPCPMCAGAILQAR 1207 (1319)
Q Consensus 1193 --LEPCpMCAmAIVhSG 1207 (1319)
++||.||..+|.+.+
T Consensus 81 ~~~~PCg~Crq~l~e~~ 97 (136)
T 1uwz_A 81 GPVSPCGACRQVISELC 97 (136)
T ss_dssp SSCCCCHHHHHHHHHHS
T ss_pred CccCHHHHHHHHHHHcC
Confidence 999999999999987
No 19
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=99.13 E-value=2e-10 Score=114.97 Aligned_cols=91 Identities=21% Similarity=0.289 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHHHHHccCC-CCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEe
Q 048747 1115 KIDDMFMREALLEAKKAADT-WEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVT 1192 (1319)
Q Consensus 1115 ~~DE~FMrlAIelA~kS~~s-Ge~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVT 1192 (1319)
..++.+|..|+.++.++... ++.||||+|+. ||+|+ .|+|-.+...+++.|||..||..|... +...+..+.||++
T Consensus 13 ~~~~~L~~~A~~a~~~ayapys~f~VGAal~~~dG~i~-~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~ 90 (146)
T 2fr5_A 13 EHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSD 90 (146)
T ss_dssp HHHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEE-EEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeC
Confidence 45678999999999988764 58899999995 99999 699987766778999999999999986 5667889999998
Q ss_pred -----CCCcHhHHHHHHHcC
Q 048747 1193 -----LEPCPMCAGAILQAR 1207 (1319)
Q Consensus 1193 -----LEPCpMCAmAIVhSG 1207 (1319)
++||.||..+|.+.+
T Consensus 91 ~~~~~~~PCG~Crq~l~E~~ 110 (146)
T 2fr5_A 91 LQEEFISPCGACRQVMREFG 110 (146)
T ss_dssp CSSSCCCCCHHHHHHHHHTC
T ss_pred CCCcccCCCHHHHHHHHHhC
Confidence 999999999999997
No 20
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=99.11 E-value=4.7e-10 Score=110.08 Aligned_cols=92 Identities=16% Similarity=0.258 Sum_probs=78.3
Q ss_pred chHHHHHHHHHHHHHHHccCCCCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEE-
Q 048747 1114 QKIDDMFMREALLEAKKAADTWEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYV- 1191 (1319)
Q Consensus 1114 ~~~DE~FMrlAIelA~kS~~sGe~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYV- 1191 (1319)
...|+.+|+.|+.++.++...++.||||+|+. ||+|+ .|+|-. ..+++.|||+.||.+|... +...+..+++|+
T Consensus 4 ~~~~~~L~~~A~~a~~~ay~~s~f~VGAal~~~dG~i~-~G~NvE--~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~ 79 (130)
T 2z3g_A 4 SQEESTLIERATATINSIPISEDYSVASAALSSDGRIF-TGVNVY--HFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGN 79 (130)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCSSSCEEEEEEETTSCEE-EEECCC--CTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEET
T ss_pred CHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEecCCeEE-EEeccc--cCCcccCHHHHHHHHHHHc-CCCceEEEEEEEC
Confidence 45677899999999999876677899999995 99988 599974 4678999999999999886 445678889998
Q ss_pred ----eCCCcHhHHHHHHHcCcC
Q 048747 1192 ----TLEPCPMCAGAILQARVS 1209 (1319)
Q Consensus 1192 ----TLEPCpMCAmAIVhSGIk 1209 (1319)
+++||.||..+|.+.+-.
T Consensus 80 ~~~~~~~PCG~Crq~l~e~~~~ 101 (130)
T 2z3g_A 80 ENRGILSPCGRCRQVLLDLHPG 101 (130)
T ss_dssp TTTEEECCCHHHHHHHHHHCTT
T ss_pred CCCCccCcCHHHHHHHHHhCCC
Confidence 789999999999998743
No 21
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=98.67 E-value=5.6e-08 Score=96.68 Aligned_cols=96 Identities=13% Similarity=0.001 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEE---
Q 048747 1116 IDDMFMREALLEAKKAADTWEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYV--- 1191 (1319)
Q Consensus 1116 ~DE~FMrlAIelA~kS~~sGe~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYV--- 1191 (1319)
.|+.+|..|+..+.++..... ||||+|+. ||+|+ .|+|--+...+++.|||..||..+... +...+....+|.
T Consensus 3 ~~~~L~~~A~~a~~~ayaPyS-~VGAAl~~~dG~i~-~G~NvEnas~~~~lcAEr~Ai~~a~~~-G~~~~~~~~v~~~~~ 79 (142)
T 3b8f_A 3 IEQQLYDVVKQLIEQRYPNDW-GGAAAIRVEDGTIY-TSVAPDVINASTELCMETGAILEAHKF-QKKVTHSICLARENE 79 (142)
T ss_dssp HHHHHHHHHHHHHHHHCSSSC-EEEEEEEETTSCEE-EECCCCCSSGGGCCCTTHHHHHHHHHH-TCCEEEEEEEEESST
T ss_pred HHHHHHHHHHHHHHhcCCCCC-CEEEEEEeCCCcEE-EEECcccccCCcccCHHHHHHHHHHHC-CCCcEEEEEEEecCC
Confidence 467899999999999987656 99999985 99988 799976666678999999999999875 333445556665
Q ss_pred -----eCCCcHhHHHHHHHcCcCeEEec
Q 048747 1192 -----TLEPCPMCAGAILQARVSTLVWG 1214 (1319)
Q Consensus 1192 -----TLEPCpMCAmAIVhSGIkRVVYG 1214 (1319)
++-||.||..+|...+-.-.||.
T Consensus 80 ~~~~~~~sPCG~CRq~l~e~~~~~~v~~ 107 (142)
T 3b8f_A 80 HSELKVLSPCGVCQERLFYWGPEVQCAI 107 (142)
T ss_dssp TSCCEECCCCHHHHHHHGGGCTTCEEEC
T ss_pred CCCCCCCCcHHHHHHHHHHhCCCCEEEE
Confidence 34599999999999875444443
No 22
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=98.42 E-value=1.2e-06 Score=87.24 Aligned_cols=91 Identities=15% Similarity=0.148 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHHccCC-CCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCcc-CCCcEEEE
Q 048747 1115 KIDDMFMREALLEAKKAADT-WEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWR-LADATLYV 1191 (1319)
Q Consensus 1115 ~~DE~FMrlAIelA~kS~~s-Ge~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~yl-LtG~TLYV 1191 (1319)
..++.+|..|+..+.++..- .+.||||+|+. ||+|+ .|+|--+...+++.|||..||..+..... .. +....||.
T Consensus 9 ~~~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-~G~NvEnasy~~t~cAEr~Ai~~a~~~G~-~~~i~~i~vv~ 86 (142)
T 1r5t_A 9 RQLEALKRAALKACELSYSPYSHFRVGCSILTNNDVIF-TGANVENASYSNCICAERSAMIQVLMAGH-RSGWKCMVICG 86 (142)
T ss_dssp HHHHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTC-CSCCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCCEE-EEEeecccCCCCCcCHHHHHHHHHHHcCC-CCceEEEEEEe
Confidence 34567899999998888763 57899999996 89888 59997666667899999999999987533 33 77888887
Q ss_pred e----C-CCcHhHHHHHHHcC
Q 048747 1192 T----L-EPCPMCAGAILQAR 1207 (1319)
Q Consensus 1192 T----L-EPCpMCAmAIVhSG 1207 (1319)
. . .||.||...|...+
T Consensus 87 ~~~~~~~~PCG~CRq~l~e~~ 107 (142)
T 1r5t_A 87 DSEDQCVSPCGVCRQFINEFV 107 (142)
T ss_dssp SCSSSCCCCCHHHHHHHHTTS
T ss_pred CCCCcccCHHHHHHHHHHHhC
Confidence 4 5 89999999999986
No 23
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=98.28 E-value=4e-06 Score=83.83 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHccCC-CCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEe-
Q 048747 1116 IDDMFMREALLEAKKAADT-WEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVT- 1192 (1319)
Q Consensus 1116 ~DE~FMrlAIelA~kS~~s-Ge~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVT- 1192 (1319)
.+..+|..|+..+.++..- .+.||||+|+. ||+|+ .|.|--+.....+.|||..||..|... +...+....++..
T Consensus 11 ~~~~L~~~A~~a~~~AyaPYS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~~~aiav~~~~ 88 (141)
T 2d30_A 11 NSKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVADT 88 (141)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTCCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CHHHHHHHHHHHHHhcCCCcCCCcEEEEEEeCCCCEE-EeeccccCCCCcccCHHHHHHHHHHHC-CCCceEEEEEEeCC
Confidence 3456888899888888753 57899999996 89877 899975555567899999999999875 3334444455544
Q ss_pred ---CCCcHhHHHHHHHcC
Q 048747 1193 ---LEPCPMCAGAILQAR 1207 (1319)
Q Consensus 1193 ---LEPCpMCAmAIVhSG 1207 (1319)
..||.||...|...+
T Consensus 89 ~~~~~PCG~CRQ~l~E~~ 106 (141)
T 2d30_A 89 KRPVPPCGACRQVMVELC 106 (141)
T ss_dssp SSCCCCCHHHHHHHHHHS
T ss_pred CCccCcCHHHHHHHHHhc
Confidence 679999999999985
No 24
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=98.20 E-value=3.8e-06 Score=83.82 Aligned_cols=93 Identities=23% Similarity=0.263 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHccC-CCCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEe--
Q 048747 1117 DDMFMREALLEAKKAAD-TWEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVT-- 1192 (1319)
Q Consensus 1117 DE~FMrlAIelA~kS~~-sGe~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVT-- 1192 (1319)
++.+|..|+..+.++.. -.+.||||+|+. ||+|+ .|.|--+....++.|||..||..|.... ...+. .|+++
T Consensus 10 ~~~L~~~A~~a~~~ayaPyS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Av~~G-~~~i~--aiav~~~ 85 (138)
T 3r2n_A 10 WDTLQKAAVAARANSYAPYSNFPVGVAGFVNDGRLI-TGVNVENASYGLALCAECSMISALYATG-GGRLV--AVYCVDG 85 (138)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEE--EEEEECT
T ss_pred HHHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCcEE-EEEcccccCCCCCcCHHHHHHHHHHHcC-CCceE--EEEEEcC
Confidence 45688899988888775 247899999986 89987 8999755555679999999999998753 22332 35555
Q ss_pred ----CCCcHhHHHHHHHcCcCeEEe
Q 048747 1193 ----LEPCPMCAGAILQARVSTLVW 1213 (1319)
Q Consensus 1193 ----LEPCpMCAmAIVhSGIkRVVY 1213 (1319)
..||.+|...|...+-..|+.
T Consensus 86 ~~~~~~PCG~CRQ~l~E~~~~~i~v 110 (138)
T 3r2n_A 86 NGDSLMPCGRCRQLLYEHGGPELKI 110 (138)
T ss_dssp TSCBCCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCcCCCCHHHHHHHHHhCCCCEEE
Confidence 799999999999886333444
No 25
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=97.80 E-value=8.1e-05 Score=82.13 Aligned_cols=104 Identities=23% Similarity=0.191 Sum_probs=74.9
Q ss_pred CcHHHHHHHHHHccCCccCchHHHHHHHHHHHHHHHccCC-CCCCEEEEEEe-CCeEEEEEEccCccc--CCCCCcHHHH
Q 048747 1095 VSKDRFDEWEEAYKLESAQQKIDDMFMREALLEAKKAADT-WEVPVGAVLVQ-HGKIIARGCNLVEEL--RDSTAHAEMI 1170 (1319)
Q Consensus 1095 lTkEQ~~EWse~wp~~~eq~~~DE~FMrlAIelA~kS~~s-Ge~PVGAVIVd-dGKIIA~GyN~t~~~--~dpt~HAEMn 1170 (1319)
++.++...+....-+ .+++.++..|.....++..- .+.+|||+|+. ||+|+ .|.|--+.. ...+.|||..
T Consensus 33 ~~~~~~~~~~~~~~~-----~~~~ll~~~a~~a~~~AyaPyS~f~VGAall~~dG~i~-~G~NvEnas~~~~~t~CAEr~ 106 (294)
T 1ctt_A 33 LTGEQVSSLKSATGL-----DEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWY-FGANMEFIGATMQQTVHAEQS 106 (294)
T ss_dssp ECHHHHHHHHHHSCC-----CHHHHHHHHHHHHHHTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHH
T ss_pred cCHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHhccCccCCCcEEEEEEeCCCCEE-EEEcCCccCccCCCccCHHHH
Confidence 567788887776665 35565555555555556652 58899999996 89877 899963322 1247999999
Q ss_pred HHHHHHhHcCCccCCCcEEEEeCCCcHhHHHHHHHcC
Q 048747 1171 CIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQAR 1207 (1319)
Q Consensus 1171 AIreAarkl~~ylLtG~TLYVTLEPCpMCAmAIVhSG 1207 (1319)
||..+... +.. .-..|+++..||.||...|...+
T Consensus 107 Ai~~A~~~-G~~--~~~~iav~~~PCG~CRQ~l~E~~ 140 (294)
T 1ctt_A 107 AISHAWLS-GEK--ALAAITVNYTPCGHCRQFMNELN 140 (294)
T ss_dssp HHHHHHHT-TCC--CEEEEEESSCCCHHHHHHHTTBT
T ss_pred HHHHHHHc-CCC--cEEEEEEEcCCCHHHHHHHHHhC
Confidence 99998875 222 23456678899999999999986
No 26
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=97.71 E-value=8.5e-05 Score=75.29 Aligned_cols=89 Identities=22% Similarity=0.279 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHccC-CCCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEE---
Q 048747 1117 DDMFMREALLEAKKAAD-TWEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYV--- 1191 (1319)
Q Consensus 1117 DE~FMrlAIelA~kS~~-sGe~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYV--- 1191 (1319)
.+.++..|+..+.++.. -.+.+|||+|.. ||+|+ .|.|--+.....+.|||..||..|... +...+....++.
T Consensus 25 ~~~L~~~A~~a~~~AYaPYS~F~VGAAll~~dG~i~-tG~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~i~aiavv~~~~ 102 (150)
T 3mpz_A 25 WNALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTV-TGCNVENVSYGLGLCAECAVVCALHSG-GGGRLVALSCVGPDG 102 (150)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEECTTS
T ss_pred HHHHHHHHHHHHHhccCCCCCCCEEEEEEeCCCCEE-EEEecccccCCccccHHHHHHHHHHHc-CCCceEEEEEEcCCC
Confidence 35688888888888765 357889999986 99988 899975544557899999999998875 323333333332
Q ss_pred -eCCCcHhHHHHHHHcC
Q 048747 1192 -TLEPCPMCAGAILQAR 1207 (1319)
Q Consensus 1192 -TLEPCpMCAmAIVhSG 1207 (1319)
...||-+|-..|...+
T Consensus 103 ~~~~PCG~CRQ~L~Ef~ 119 (150)
T 3mpz_A 103 GVLMPCGRCRQVLLEHG 119 (150)
T ss_dssp CBCCCCHHHHHHHHHHH
T ss_pred CccCCCHHHHHHHHHhC
Confidence 2579999999999875
No 27
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=97.68 E-value=0.00015 Score=80.13 Aligned_cols=91 Identities=13% Similarity=0.068 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHccCC-CCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHc-CCccCCCcEEEEeC
Q 048747 1117 DDMFMREALLEAKKAADT-WEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVL-RTWRLADATLYVTL 1193 (1319)
Q Consensus 1117 DE~FMrlAIelA~kS~~s-Ge~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl-~~ylLtG~TLYVTL 1193 (1319)
++.+|..|+..+.++..- .+.||||+|+. ||+|+ .|.|--+...+++.|||..||..+.... +...+....||...
T Consensus 188 ~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~~i~vv~~~ 266 (294)
T 1ctt_A 188 GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIF-SGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKA 266 (294)
T ss_dssp SSHHHHHHHHHHHTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECT
T ss_pred hHHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEEEEEEEecC
Confidence 357899999999998763 37899999996 88655 6999877778899999999999988642 12357788899888
Q ss_pred C----CcHhHHHHHHHcCc
Q 048747 1194 E----PCPMCAGAILQARV 1208 (1319)
Q Consensus 1194 E----PCpMCAmAIVhSGI 1208 (1319)
+ ||.||...|...+-
T Consensus 267 ~~~~sPCG~CRq~L~ef~~ 285 (294)
T 1ctt_A 267 DAPLIQWDATSATLKALGC 285 (294)
T ss_dssp TCSSCCHHHHHHHHHHHTC
T ss_pred CCCcCccHHHHHHHHHHCC
Confidence 7 99999999999764
No 28
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=96.89 E-value=0.0074 Score=61.72 Aligned_cols=91 Identities=14% Similarity=0.214 Sum_probs=62.8
Q ss_pred CchHHHHHHHHHHHHHHHccCCCCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEE
Q 048747 1113 QQKIDDMFMREALLEAKKAADTWEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYV 1191 (1319)
Q Consensus 1113 q~~~DE~FMrlAIelA~kS~~sGe~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYV 1191 (1319)
....|...+..|+.....+.-....+|||+|.. ||+|+ .|.|-- ......+||..||-.|..... ..+.-..++.
T Consensus 27 L~~ed~~Li~~A~~a~~~~PyS~~f~VGAAll~~dG~i~-tG~NVE--n~~~~lCAEr~Ai~~Avs~G~-~~~~ai~vv~ 102 (158)
T 3oj6_A 27 LSAAGQNLIDTATSVINGIPVSDFYSVASAAISDDGRVF-SGVNVY--HFNGGPCAELVVLGVAAAAGA-TKLTHIVAIA 102 (158)
T ss_dssp CCHHHHHHHHHHHHHHHTSCCCSSSCEEEEEEETTSCEE-EEECCC--CTTTCCCHHHHHHHHHHHTTC-CCEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCCCEE-EEEccc--cCCccccHHHHHHHHHHHhCC-CceEEEEEEe
Confidence 456678888889887665322223789999986 99988 799963 245689999999999886432 1222222222
Q ss_pred e-----CCCcHhHHHHHHHcC
Q 048747 1192 T-----LEPCPMCAGAILQAR 1207 (1319)
Q Consensus 1192 T-----LEPCpMCAmAIVhSG 1207 (1319)
. .-||-+|-..|...+
T Consensus 103 ~~~~~~~~PCG~CRQvL~Ef~ 123 (158)
T 3oj6_A 103 NEGRGILSPCGRCRQVLADLH 123 (158)
T ss_dssp TTTTEEECCCHHHHHHHHHHS
T ss_pred CCCCCcCCCCHHHHHHHHHhC
Confidence 2 259999999999875
No 29
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=96.24 E-value=0.018 Score=57.74 Aligned_cols=91 Identities=22% Similarity=0.311 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHccCC-CCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCC-ccCCCcEEEEe
Q 048747 1116 IDDMFMREALLEAKKAADT-WEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRT-WRLADATLYVT 1192 (1319)
Q Consensus 1116 ~DE~FMrlAIelA~kS~~s-Ge~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~-ylLtG~TLYVT 1192 (1319)
.+...+..|.....++..- .+.+|||+|.. ||+|+ .|.|--+.....+.+||..||-.+...... ..+.-..++..
T Consensus 10 ~~~~L~~~A~~a~~~AyaPYS~F~VGAAll~~dG~iy-tG~NVEnasy~~t~CAEr~Ai~~Avs~G~~~~~i~aiavv~~ 88 (138)
T 3dmo_A 10 THHALIEAAKAAREKAYAPYSNFKVGAALVTNDGKVF-HGCNVENASYGLCNCAERTALFSALAAGYRPGEFAAIAVVGE 88 (138)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCTTCEEEEEEEES
T ss_pred cHHHHHHHHHHHHHhccCCcCCCCEEEEEEeCCCCEE-EEEeecccccccccCHHHHHHHHHHHcCCCcccEEEEEEEcC
Confidence 3456778888777777652 47789999986 89976 699964433445899999999998764211 02222222211
Q ss_pred ----CCCcHhHHHHHHHcC
Q 048747 1193 ----LEPCPMCAGAILQAR 1207 (1319)
Q Consensus 1193 ----LEPCpMCAmAIVhSG 1207 (1319)
.-||-+|-..|...+
T Consensus 89 ~~~~~~PCG~CRQ~l~Ef~ 107 (138)
T 3dmo_A 89 THGPIAPCGACRQVMIELG 107 (138)
T ss_dssp CSSSCCCCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHhC
Confidence 569999999999874
No 30
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=95.08 E-value=0.093 Score=58.40 Aligned_cols=107 Identities=20% Similarity=0.215 Sum_probs=70.0
Q ss_pred CCCcHHHHHHHHHHccCCccCchHHHHHHHHHHHHHHHccC-CCCCCEEEEEEe-CCeEEEEEEccCcc--cCCCCCcHH
Q 048747 1093 KQVSKDRFDEWEEAYKLESAQQKIDDMFMREALLEAKKAAD-TWEVPVGAVLVQ-HGKIIARGCNLVEE--LRDSTAHAE 1168 (1319)
Q Consensus 1093 ~PlTkEQ~~EWse~wp~~~eq~~~DE~FMrlAIelA~kS~~-sGe~PVGAVIVd-dGKIIA~GyN~t~~--~~dpt~HAE 1168 (1319)
..++.+++..+....-+ ..++..+.++-..+..+.. -.+.+|||++.. ||+|+ .|.|--+. ....+.|||
T Consensus 34 ~~~~~~~~~~l~~~~~~-----~~~el~~~l~~~A~~~AyaPyS~F~VGAAll~~dG~i~-~G~NvEna~as~~~t~CAE 107 (298)
T 4eg2_A 34 ATFSAEQYQQLLTLSGL-----EDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLY-LGANMEFTGAQLGQTVHAE 107 (298)
T ss_dssp SEECHHHHHHHHHHHCC-----CHHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHH
T ss_pred cccCHHHHHHHHHHhCC-----CHHHHHHHHHHHHHhhCcCCcCCCcEEEEEEECCCcEE-EEEcccccccccCccccHH
Confidence 34577888888776654 2233333333333344443 247789999886 89876 69996211 112479999
Q ss_pred HHHHHHHHhHcCCccCCCcEEEEeCCCcHhHHHHHHHcCc
Q 048747 1169 MICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARV 1208 (1319)
Q Consensus 1169 MnAIreAarkl~~ylLtG~TLYVTLEPCpMCAmAIVhSGI 1208 (1319)
..||-.+..... ..+ ..|.+..-||-+|-..|...+-
T Consensus 108 r~Ai~~Av~~G~-~~i--~~iav~~~PCG~CRQ~l~Ef~~ 144 (298)
T 4eg2_A 108 QCAISHAWMKGE-KGV--ADITINFSPCGHCRQFMNELTT 144 (298)
T ss_dssp HHHHHHHHHTTC-SCE--EEEEESSCCCHHHHHHHTTBTT
T ss_pred HHHHHHHHhCCC-Cce--EEEEeecCCCHHHHHHHHHhcC
Confidence 999999877521 111 2456678999999999998864
No 31
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=93.39 E-value=0.3 Score=54.39 Aligned_cols=89 Identities=11% Similarity=0.071 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHccCC-CCCCEEEEEEe-CCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCC-ccCCCcEEEEe--
Q 048747 1118 DMFMREALLEAKKAADT-WEVPVGAVLVQ-HGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRT-WRLADATLYVT-- 1192 (1319)
Q Consensus 1118 E~FMrlAIelA~kS~~s-Ge~PVGAVIVd-dGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~-ylLtG~TLYVT-- 1192 (1319)
+..+..|+..+.++..- .+.+|||+|.. ||+|. .|.|--+...+++..||..||-.+...... ..+.-..++-.
T Consensus 193 ~~L~~~A~~a~~~ayaPYS~~~vGAAl~t~dG~iy-tG~nvEnAay~~slcAEr~Al~~av~~G~~~~~i~aiv~v~~~~ 271 (298)
T 4eg2_A 193 EELIQQALRAMNISHSPYTQNFSGVALKMRSGAIY-LGAYAENAAFNPSLPPLQVALAQAMMMGESFEDIEAAALVESAT 271 (298)
T ss_dssp CHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECTT
T ss_pred HHHHHHHHHHHHhccCCccCCCeEEEEEeCCCCEE-EEEeeeccccCCCCCHHHHHHHHHHHCCCCccCeEEEEEEeCCC
Confidence 35778899888887752 46789999987 88876 699875666789999999999998764211 12333344433
Q ss_pred --CCCcHhHHHHHHHcC
Q 048747 1193 --LEPCPMCAGAILQAR 1207 (1319)
Q Consensus 1193 --LEPCpMCAmAIVhSG 1207 (1319)
.-||.+|-..|...+
T Consensus 272 ~~~sPCG~CRqvL~e~~ 288 (298)
T 4eg2_A 272 GKISHLADTQATLEVIN 288 (298)
T ss_dssp CSSCCHHHHHHHHHHHC
T ss_pred CCcCCcHHHHHHHHHhC
Confidence 348999999998765
No 32
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=87.98 E-value=0.4 Score=51.00 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=47.4
Q ss_pred CCcHHHHHHHHHHh-HcCCccCCCcEEEEeCCCcHhHHHHHHHcC-----------cCeEEecCCCccCCcCcchhhccc
Q 048747 1164 TAHAEMICIRAASN-VLRTWRLADATLYVTLEPCPMCAGAILQAR-----------VSTLVWGAPNKLLGADGSWVRLFP 1231 (1319)
Q Consensus 1164 t~HAEMnAIreAar-kl~~ylLtG~TLYVTLEPCpMCAmAIVhSG-----------IkRVVYGapdp~~Gg~GSgirLL~ 1231 (1319)
..|||+.-|..+.. .+.+...-..|.|+|.-||+-||..|+..- +.|+||- ++. ...+++.|.
T Consensus 78 ~~HAEl~FL~~~~~~~Ld~~~~Y~vTwy~SWSPC~~CA~~v~~FL~~~~~v~L~If~aRLY~~--~~~---~~~gLr~L~ 152 (203)
T 3v4k_A 78 GRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIKTARIYDD--QGR---CQEGLRTLA 152 (203)
T ss_pred CCcHHHHHHHHhhhccCCCCCeEEEEEEEeCCChHHHHHHHHHHHhhCCCeEEEEEEEeeccc--Cch---HHHHHHHHH
Confidence 47999999998875 344433345689999999999999999653 3456654 221 234677777
Q ss_pred cCCC
Q 048747 1232 DGGE 1235 (1319)
Q Consensus 1232 eaGI 1235 (1319)
++|+
T Consensus 153 ~aG~ 156 (203)
T 3v4k_A 153 EAGA 156 (203)
T ss_pred HCCC
Confidence 7775
No 33
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=83.30 E-value=0.82 Score=48.26 Aligned_cols=75 Identities=21% Similarity=0.341 Sum_probs=48.0
Q ss_pred CCCCCcHHHHHHHHHHh-HcCCccCCCcEEEEeCCCcHhHHHHHHHc-----CcCeEEecCCCccC--CcCcchhhcccc
Q 048747 1161 RDSTAHAEMICIRAASN-VLRTWRLADATLYVTLEPCPMCAGAILQA-----RVSTLVWGAPNKLL--GADGSWVRLFPD 1232 (1319)
Q Consensus 1161 ~dpt~HAEMnAIreAar-kl~~ylLtG~TLYVTLEPCpMCAmAIVhS-----GIkRVVYGapdp~~--Gg~GSgirLL~e 1232 (1319)
..+..|||+.=|..+.. .+.+...-.-|-|+|-.||+-||..|+.. .|.=.||.+.--.. ...-.+++.|.+
T Consensus 61 ~~~~~HAE~~Fl~~~~~~~L~~~~~y~VTwy~SwSPC~~CA~~va~FL~~~~~v~L~If~aRLY~~~~~~~q~gLr~L~~ 140 (190)
T 3vow_A 61 SETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQ 140 (190)
T ss_dssp SCGGGSHHHHHHHHHSSTTSCTTSEEEEEEEEEECCCHHHHHHHHHHHHHCTTEEEEEEEEECTTTTSHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHhhcCCCCCceEEEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEEEEecccccCchHHHHHHHHHH
Confidence 34567999999998754 33333223468999999999999999854 55544555421100 012245777777
Q ss_pred CCC
Q 048747 1233 GGE 1235 (1319)
Q Consensus 1233 aGI 1235 (1319)
+|+
T Consensus 141 ~G~ 143 (190)
T 3vow_A 141 EGV 143 (190)
T ss_dssp HTC
T ss_pred CCC
Confidence 775
No 34
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=40.21 E-value=14 Score=39.61 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=28.1
Q ss_pred cccCC--CCCCCCccccCHHHHH-HHHHhhhcceeec
Q 048747 1285 KIADD--LPPPSCVPIVNQQSKI-LTKMRHMFHMMFC 1318 (1319)
Q Consensus 1285 k~~Dg--~~~~~s~~Is~~qSk~-lhkmR~~~dai~c 1318 (1319)
.++|| ..++.+.||++..++. +|++|+.+|||+.
T Consensus 42 ~SLDG~a~~~g~s~wit~~~~~~~~~~lr~~~DaIlv 78 (270)
T 2p4g_A 42 TSINGSATLSGVSGPMGDQTDADLLIQLRGWADAIVV 78 (270)
T ss_dssp EETTSBSCBTTBSGGGCCHHHHHHHHHHHHHCSEEEE
T ss_pred ECCCCCcCCCCCccCcCCHHHHHHHHHHHHHCCEEEE
Confidence 56788 4456788999999988 5999999999984
No 35
>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta deaminase motif, zinc coordination, ionsitol hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo sapiens}
Probab=20.70 E-value=2.2e+02 Score=32.99 Aligned_cols=66 Identities=23% Similarity=0.329 Sum_probs=40.0
Q ss_pred CCEEEEEEe------CCeEEEEEEccC-c-c---cCC----CCCcHHHHHHHHHHhHc----------------------
Q 048747 1137 VPVGAVLVQ------HGKIIARGCNLV-E-E---LRD----STAHAEMICIRAASNVL---------------------- 1179 (1319)
Q Consensus 1137 ~PVGAVIVd------dGKIIA~GyN~t-~-~---~~d----pt~HAEMnAIreAarkl---------------------- 1179 (1319)
..++|||+. +.+||+.|.-.- . . ..+ ...|||+.|.+-.-+-+
T Consensus 52 tvLA~iV~~~~~~~~~~~vVslgTGtKc~~~~~~~~~G~vlhD~HAEVlARRaf~r~L~~ql~~~~~~~~~~~~sif~~~ 131 (403)
T 1zy7_A 52 KVLAGVVMTTGTDVKDAKVISVSTGTKCINGEYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNNKDDQKRSIFQKS 131 (403)
T ss_dssp SCEEEEEEEESSCGGGCEEEEEEECCCBCCGGGCCTTSCSCSBCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCSEEEC
T ss_pred eEEEEEEEEccCCCCceEEEEEcCCCCccCcccccCCCCeeeeCCHHHHHHHHHHHHHHHHHHHHhccccCCCCceEEEC
Confidence 446666654 357998887431 1 1 111 24799999988744311
Q ss_pred --CCccCCC---cEEEEeCCCcHhHHHH
Q 048747 1180 --RTWRLAD---ATLYVTLEPCPMCAGA 1202 (1319)
Q Consensus 1180 --~~ylLtG---~TLYVTLEPCpMCAmA 1202 (1319)
+.+.|+. ..||+|.-||--|++.
T Consensus 132 ~~~~~~Lk~~v~lhlY~S~~PCGdAsi~ 159 (403)
T 1zy7_A 132 ERGGFRLKENVQFHLYISTSPCGDARIF 159 (403)
T ss_dssp TTSSEEECTTEEEEEEESSCCTTHHHHC
T ss_pred CCCCeEECCCcEEEEEeccCCCCCcccC
Confidence 1122322 4799999999877763
Done!