Query 048748
Match_columns 530
No_of_seqs 273 out of 1908
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 22:18:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 100.0 1.7E-36 5.8E-41 309.5 25.0 252 96-500 4-255 (320)
2 3v5u_A Uncharacterized membran 99.8 6.8E-20 2.3E-24 186.9 12.9 141 98-247 165-306 (320)
3 3t6g_B Breast cancer anti-estr 9.6 7.3E+02 0.025 23.1 7.2 69 386-465 119-188 (229)
4 3hzq_A Large-conductance mecha 6.3 5.9E+02 0.02 21.2 4.4 16 159-174 33-48 (114)
5 2jr2_A UPF0352 protein CPS_261 4.3 4.3E+02 0.015 20.3 2.1 57 422-485 10-66 (76)
6 1v0d_A DNA fragmentation facto 4.2 2.6E+02 0.009 27.6 1.1 21 40-60 230-250 (329)
7 4b4a_A TATC, SEC-independent p 3.6 1.7E+03 0.06 20.5 6.4 13 226-238 212-224 (249)
8 3u5c_N S27A, YS15, 40S ribosom 3.4 1.1E+03 0.038 20.4 4.3 25 421-446 30-54 (151)
9 1ehs_A STB, heat-stable entero 3.4 4.4E+02 0.015 17.6 1.3 21 464-484 22-42 (48)
10 3j20_Q 30S ribosomal protein S 3.3 1.2E+03 0.042 20.3 4.5 25 421-446 30-54 (158)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=100.00 E-value=1.7e-36 Score=309.54 Aligned_cols=252 Identities=17% Similarity=0.259 Sum_probs=210.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhCCCchhhhhhHhHhcCChhHHHHHHHHHhccCCccccchhcchhhHHH
Q 048748 96 LLFLWLLVLFYLLGNTASEYFCSSLERLSRLLKLSPTIAGVTLLALGNGAPDVFAIVVSFMGTGTNDIGLNTVLGGASFV 175 (530)
Q Consensus 96 ~~~l~l~~lf~~L~~~a~~~f~~~l~~is~~l~ls~~v~GvtllAlGns~Pdl~~~i~a~~~~g~~~laig~ilGs~lf~ 175 (530)
+.+++++..+.++ ..++|+|+++.+.+++++|+||.++|+|++|+|||+||+++++.|..+ |++|+++||++|||+||
T Consensus 4 ~~~~~l~~g~~~l-~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~-g~~diaiGnivGSni~n 81 (320)
T 3v5u_A 4 LGVGYFLLGLILL-YYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYM-HAPGISIGNAIGSCICN 81 (320)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhC-CCCceeeeeecchHHHH
Confidence 3455666777777 789999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHhhhhcCceeeecchhHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHhhhccccccccccc
Q 048748 176 SCVVVGIISIFVHSRHVHVEKYAFVRDVGFFLLVLASLILILTRGEINLWEAVGFTSMYVVYVIVVYISTVYYDHAIGEE 255 (530)
Q Consensus 176 ~~lv~G~~~l~~~~~~~~v~~~~~~rd~~~~l~~~~~l~~~l~~g~i~~~~~~~ll~lY~~Yl~~~~~~~~~~~~~~~~~ 255 (530)
+++++|++.++ +|+++ ++.+.||..+++++...+..+..+| +++++|++++..|+.|+.+.+++++.
T Consensus 82 illvlG~~~li---~p~~v-~~~~~~d~~~~l~~~~~l~~~~~~g-is~~~g~~Ll~~Y~~yl~~~~~~~~~-------- 148 (320)
T 3v5u_A 82 IGLVLGLSAII---SPIIV-DKNLQKNILVYLLFVIFAAVIGIDG-FSWIDGVVLLILFIIYLRWTVKNGSA-------- 148 (320)
T ss_dssp HHTHHHHHHHH---SCBCC-CHHHHHHHHHHHHHHHHHHHHTTTC-BCHHHHHHHHHHHHHHHHHHHHHTBC--------
T ss_pred HHHHHHHHHHH---ccccc-cHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 99999999998 67777 6788999999998887777777888 99999999999999999998765420
Q ss_pred cccccCCCCCCCCCCCcccCcccccccccccCCCCcccchhhhhcccccCCCCchhhHHHHHhhhhhhhhhhccccccCC
Q 048748 256 SERDFDSSYGSGLSVPILSGINEKLESNCLEEGTSEDETAADIQKCCFCLGSSTSCAKCLCILEMPLYLTRRLTIPVVCE 335 (530)
Q Consensus 256 ~~~~~~~~~~~~~~~pll~~~~~e~~~~~~~~~~~~~~~~~~~~r~~f~~~~~~~~~k~~~i~~~P~~~~~~ltiP~~~~ 335 (530)
+ ++|+++ +++.. .|
T Consensus 149 -~-------------------~~~~~~------------~~~~~---~~------------------------------- 162 (320)
T 3v5u_A 149 -E-------------------IEENND------------KNNPS---VV------------------------------- 162 (320)
T ss_dssp ---------------------------------------CCCHH---HH-------------------------------
T ss_pred -c-------------------cccccc------------ccccc---HH-------------------------------
Confidence 0 000000 00000 00
Q ss_pred CCCCchhhHhhhhhhhHHHHhhcCCCccCCCCcchhHHHHHHHHHHHHHHhhhhhccCCCCCCcccccchhhhHHHHHHH
Q 048748 336 KRWSKPVAVTSVTLAPVLLSLVWNPYDVDDGSLNCLIVCGIGLLFGIVLGVLAYITTEKSSPPRKCLFPWLAGEFLMSVT 415 (530)
Q Consensus 336 ~~w~k~l~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~i~~~~~t~~~~pP~~~~~~~~~~gF~~Sv~ 415 (530)
|. .+.++.+..
T Consensus 163 ----~~-----------------------------------------------------------------~~~l~~~l~ 173 (320)
T 3v5u_A 163 ----FS-----------------------------------------------------------------LVLLIIGLI 173 (320)
T ss_dssp ----HH-----------------------------------------------------------------HHHHHHHHH
T ss_pred ----HH-----------------------------------------------------------------HHHHHHHHH
Confidence 00 011233444
Q ss_pred HHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHhcHHHHHHHHHHHHcCCCCcccchheecchhhHHHHHHHhhHHHh
Q 048748 416 WSYITAQELVALLVSLGYIFALSPSILGLTILAWGNSIGDLITNLTMALNGGAQGAQIAVSGCYAGPIFNIIFGLGLSLV 495 (530)
Q Consensus 416 wI~~~A~elV~ll~~ig~i~gIS~~ilGlTvlA~GnSi~Dlvsni~~A~~G~~~~~~mAi~ac~Gsplfnil~glGl~~l 495 (530)
.+...++.+++.++.+++.+|+||.++|+|++|+|||+||+++++..||||++ ++|+++++||++||+++.+|++.+
T Consensus 174 ~l~~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtslPE~~~sv~aa~~g~~---~laig~iiGS~ifn~~~v~g~~~l 250 (320)
T 3v5u_A 174 GVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMVSLAAAKRNLG---GMVLGNVIGSNIADIGGALAVGSL 250 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHHhCCchHHHHHHHHHHHhccHHHHHHHHHHHcCCC---cHHHHHHHhHHHHHHHHHHHHHHh
Confidence 56666999999999999999999999999999999999999999999999998 999999999999999999999998
Q ss_pred hhhcc
Q 048748 496 GSCWH 500 (530)
Q Consensus 496 i~~~~ 500 (530)
++++.
T Consensus 251 i~p~~ 255 (320)
T 3v5u_A 251 FMHLP 255 (320)
T ss_dssp HSCBC
T ss_pred hcccc
Confidence 86543
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.81 E-value=6.8e-20 Score=186.91 Aligned_cols=141 Identities=17% Similarity=0.315 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHhCCCchhhhhhHhHhcCChhHHHHHHHHHhccCCccccchhcchhhHHHHH
Q 048748 98 FLWLLVLFYLLGNTASEYFCSSLERLSRLLKLSPTIAGVTLLALGNGAPDVFAIVVSFMGTGTNDIGLNTVLGGASFVSC 177 (530)
Q Consensus 98 ~l~l~~lf~~L~~~a~~~f~~~l~~is~~l~ls~~v~GvtllAlGns~Pdl~~~i~a~~~~g~~~laig~ilGs~lf~~~ 177 (530)
.++++.....+ ..++++++++++.+++.+|+||.+.|+|++|+||++||+++++.|+++ |+.|+++||++|||+||++
T Consensus 165 ~~~l~~~l~~l-~~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtslPE~~~sv~aa~~-g~~~laig~iiGS~ifn~~ 242 (320)
T 3v5u_A 165 LVLLIIGLIGV-LVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMVSLAAAKR-NLGGMVLGNVIGSNIADIG 242 (320)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHhccccHHHHHHHhCCchHHHHHHHHHHHhccHHHHHHHHHHHc-CCCcHHHHHHHhHHHHHHH
Confidence 34444555555 568999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHhhhhcCceeeecchhHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHH-HHHHHhhhccc
Q 048748 178 VVVGIISIFVHSRHVHVEKYAFVRDVGFFLLVLASLILILTRGEINLWEAVGFTSMYVV-YVIVVYISTVY 247 (530)
Q Consensus 178 lv~G~~~l~~~~~~~~v~~~~~~rd~~~~l~~~~~l~~~l~~g~i~~~~~~~ll~lY~~-Yl~~~~~~~~~ 247 (530)
+++|+.+++ +|++++ .||..+++++..++..+..+|+++++||+.++.+|++ |+.+.+..++.
T Consensus 243 ~v~g~~~li---~p~~~~----~~d~~~~l~~~~ll~~~~~~~~i~~~eG~~ll~~Y~~~y~~~~~~~~~~ 306 (320)
T 3v5u_A 243 GALAVGSLF---MHLPAE----NVQMAVLVIMSLLLYLFAKYSKIGRWQGILFLALYIIAIASLRMGGGSL 306 (320)
T ss_dssp THHHHHHHH---SCBCCC----HHHHHHHHHHHHHHHHHHHHSCBSHHHHHHHHHHHHHHHHHSCSSCC--
T ss_pred HHHHHHHhh---ccccch----HHHHHHHHHHHHHHHHHHhCCcCcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999988 677775 7899888887777666788999999999999999999 99988765543
No 3
>3t6g_B Breast cancer anti-estrogen resistance protein 1; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=9.62 E-value=7.3e+02 Score=23.13 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=48.1
Q ss_pred hhhhhcc-CCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHHHHhcHHHHHHHHHHHH
Q 048748 386 VLAYITT-EKSSPPRKCLFPWLAGEFLMSVTWSYITAQELVALLVSLGYIFALSPSILGLTILAWGNSIGDLITNLTMAL 464 (530)
Q Consensus 386 i~~~~~t-~~~~pP~~~~~~~~~~gF~~Sv~wI~~~A~elV~ll~~ig~i~gIS~~ilGlTvlA~GnSi~Dlvsni~~A~ 464 (530)
|=+|+.+ +...||+.+ +.=-=.+...|..||-+-+.+++ .++..=+.--|+.-+|-+.|..-++++|-
T Consensus 119 IdaF~~sv~~nQPP~iF---------VahsK~VIlsAHKLVfIGDTL~r--~~~~~dvr~~Vl~~sn~Lc~~LK~~VlAT 187 (229)
T 3t6g_B 119 VDAFFTAVATNQPPKIF---------VAHSKFVILSAHKLVFIGDTLSR--QAKAADVRSQVTHYSNLLCDLLRGIVATT 187 (229)
T ss_dssp HHHHHHHHHTTCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHH--SCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchhh---------HhcCCEEEEEeeeeeeecchHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355544 578899854 11112244569999988888877 45555667788899999999988888876
Q ss_pred c
Q 048748 465 N 465 (530)
Q Consensus 465 ~ 465 (530)
+
T Consensus 188 K 188 (229)
T 3t6g_B 188 K 188 (229)
T ss_dssp H
T ss_pred H
Confidence 5
No 4
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=6.29 E-value=5.9e+02 Score=21.17 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=12.7
Q ss_pred CCccccchhcchhhHH
Q 048748 159 GTNDIGLNTVLGGASF 174 (530)
Q Consensus 159 g~~~laig~ilGs~lf 174 (530)
+-.|+|+|-++|++.-
T Consensus 33 NViDLAVgVIIG~AF~ 48 (114)
T 3hzq_A 33 NVLDLAIAVVMGAAFN 48 (114)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH
Confidence 5678999999998763
No 5
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=4.32 E-value=4.3e+02 Score=20.28 Aligned_cols=57 Identities=12% Similarity=0.279 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHHHHHHhcHHHHHHHHHHHHcCCCCcccchheecchhhHHH
Q 048748 422 QELVALLVSLGYIFALSPSILGLTILAWGNSIGDLITNLTMALNGGAQGAQIAVSGCYAGPIFN 485 (530)
Q Consensus 422 ~elV~ll~~ig~i~gIS~~ilGlTvlA~GnSi~Dlvsni~~A~~G~~~~~~mAi~ac~Gsplfn 485 (530)
..+..++..+..++.=-.+=.-+.+++.||.+..++.++.-++ |.+++--|+--+.+
T Consensus 10 ~qvE~ll~eli~VLEKH~Ap~DLSLMvLGN~vTnlln~V~~~q-------R~~iAe~Fa~AL~~ 66 (76)
T 2jr2_A 10 ERVEKIIQDLLDVLVKEEVTPDLALMCLGNAVTNIIAQVPESK-------RVAVVDNFTKALKQ 66 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTSCHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHhCCHHH-------HHHHHHHHHHHHHH
Confidence 3344445555555544455556788899999999888776554 45666555554443
No 6
>1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase, nuclease, caspase-activated DNAse; HET: DNA; 2.6A {Mus musculus} SCOP: d.4.1.7 PDB: 1f2r_C 1c9f_A 1ibx_A*
Probab=4.24 E-value=2.6e+02 Score=27.65 Aligned_cols=21 Identities=10% Similarity=0.251 Sum_probs=16.8
Q ss_pred cCCcccccccccccccccccc
Q 048748 40 FNLRNQHGCKAFQKLDDYRAK 60 (530)
Q Consensus 40 ~~~~~~~~C~~~~~~~~~~~~ 60 (530)
-|.++.+.|...|+.+||..|
T Consensus 230 qG~~~~~~C~~~H~INPY~sr 250 (329)
T 1v0d_A 230 QGPFDLESCLSKHSINPYGNR 250 (329)
T ss_dssp CCCTTSSSCTTCCEECGGGCH
T ss_pred ccccCccccccccccCCCcCh
Confidence 688888899888888887654
No 7
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=3.60 E-value=1.7e+03 Score=20.54 Aligned_cols=13 Identities=15% Similarity=0.347 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 048748 226 EAVGFTSMYVVYV 238 (530)
Q Consensus 226 ~~~~ll~lY~~Yl 238 (530)
.++-+..+|-+-+
T Consensus 212 laiPl~lLYEisi 224 (249)
T 4b4a_A 212 MAIPLLLLYEISI 224 (249)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 8
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=3.43 E-value=1.1e+03 Score=20.41 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhhccChhhHHHHH
Q 048748 421 AQELVALLVSLGYIFALSPSILGLTI 446 (530)
Q Consensus 421 A~elV~ll~~ig~i~gIS~~ilGlTv 446 (530)
++|+.+.+..++. =|.+++-+|+++
T Consensus 30 ~eeVe~~I~klak-kG~tpSqIG~iL 54 (151)
T 3u5c_N 30 SESVIEQIVKYAR-KGLTPSQIGVLL 54 (151)
T ss_dssp HHHHHHHHHHHHT-TTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCCHHHhhhHH
Confidence 8999999999998 599999999875
No 9
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=3.39 E-value=4.4e+02 Score=17.55 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=13.4
Q ss_pred HcCCCCcccchheecchhhHH
Q 048748 464 LNGGAQGAQIAVSGCYAGPIF 484 (530)
Q Consensus 464 ~~G~~~~~~mAi~ac~Gsplf 484 (530)
++|+-|.-+=.-++|||..+.
T Consensus 22 kkgflgvrdgtagacfgaqim 42 (48)
T 1ehs_A 22 KKGFLGVRDGTAGACFGAQIM 42 (48)
T ss_dssp HSCSSSSSSSSCCTTTTTHHH
T ss_pred hcccceeccCccccccchhHh
Confidence 556554335556788888764
No 10
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=3.34 E-value=1.2e+03 Score=20.32 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhhhccChhhHHHHH
Q 048748 421 AQELVALLVSLGYIFALSPSILGLTI 446 (530)
Q Consensus 421 A~elV~ll~~ig~i~gIS~~ilGlTv 446 (530)
++|+.+.+..++. =|.+++-+|+++
T Consensus 30 ~eev~~~i~klak-kG~~pSqIG~~L 54 (158)
T 3j20_Q 30 VEEIENLVVKLRK-EGYSTAMIGTIL 54 (158)
T ss_dssp HHHHHHHHHHHHH-HTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCCHHHhhHHH
Confidence 8999999999998 599999999876
Done!