Query 048748
Match_columns 530
No_of_seqs 273 out of 1908
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 22:18:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048748.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048748hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v0da_ d.4.1.7 (A:) Caspase-a 4.8 1.1E+02 0.0078 26.7 1.1 21 40-60 146-166 (245)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 4.6 2.8E+02 0.02 24.4 4.2 33 435-467 54-88 (447)
3 d2otaa1 a.284.1.1 (A:7-68) Hyp 4.5 1.7E+02 0.012 20.0 1.7 50 428-484 10-59 (62)
4 d1uaza_ f.13.1.1 (A:) Archaerh 4.4 3.8E+02 0.028 22.7 4.7 29 372-400 16-44 (236)
5 d2iuba2 f.17.3.1 (A:286-349) M 4.2 3.6E+02 0.026 17.7 3.5 16 340-355 7-22 (64)
6 d1mvfd_ b.129.1.1 (D:) MazE {E 4.0 49 0.0035 21.2 -1.4 6 449-454 6-11 (44)
7 d1jb0j_ f.23.18.1 (J:) Subunit 3.6 4.2E+02 0.03 16.2 2.9 19 410-428 12-30 (41)
8 d1lr7a1 g.3.11.3 (A:64-88) Dom 3.6 1.5E+02 0.011 16.1 0.7 19 47-67 2-20 (26)
9 d1o82a_ a.64.2.1 (A:) Bacterio 3.6 1.6E+02 0.012 19.7 0.9 15 124-138 2-16 (70)
10 d1ehsa_ g.2.1.1 (A:) Heat-stab 3.4 2.1E+02 0.015 17.6 1.3 21 464-484 22-42 (48)
No 1
>d1v0da_ d.4.1.7 (A:) Caspase-activated DNase, CAD (DffB, DFF40) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.83 E-value=1.1e+02 Score=26.69 Aligned_cols=21 Identities=10% Similarity=0.251 Sum_probs=15.5
Q ss_pred cCCcccccccccccccccccc
Q 048748 40 FNLRNQHGCKAFQKLDDYRAK 60 (530)
Q Consensus 40 ~~~~~~~~C~~~~~~~~~~~~ 60 (530)
-|.++.+.|..-|+.+||..|
T Consensus 146 qG~~~~~~C~~~H~INPY~sR 166 (245)
T d1v0da_ 146 QGPFDLESCLSKHSINPYGNR 166 (245)
T ss_dssp CCCTTSSSCTTCCEECGGGCH
T ss_pred ccCCCCCccccccccCCcccc
Confidence 677788888877777777544
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.57 E-value=2.8e+02 Score=24.42 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=25.0
Q ss_pred hccChhhHHH--HHHHHHhcHHHHHHHHHHHHcCC
Q 048748 435 FALSPSILGL--TILAWGNSIGDLITNLTMALNGG 467 (530)
Q Consensus 435 ~gIS~~ilGl--TvlA~GnSi~Dlvsni~~A~~G~ 467 (530)
+|+|++-+|+ +...+|..++.++...-.-|.|.
T Consensus 54 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~ 88 (447)
T d1pw4a_ 54 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNP 88 (447)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 6888887776 56667888888888877777664
No 3
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=4.49 E-value=1.7e+02 Score=19.96 Aligned_cols=50 Identities=14% Similarity=0.284 Sum_probs=28.5
Q ss_pred HHHHhhhhccChhhHHHHHHHHHhcHHHHHHHHHHHHcCCCCcccchheecchhhHH
Q 048748 428 LVSLGYIFALSPSILGLTILAWGNSIGDLITNLTMALNGGAQGAQIAVSGCYAGPIF 484 (530)
Q Consensus 428 l~~ig~i~gIS~~ilGlTvlA~GnSi~Dlvsni~~A~~G~~~~~~mAi~ac~Gsplf 484 (530)
+..+..++.=-++=.-+.++..||.+..+++.+.-++ +.+++--|+--+.
T Consensus 10 l~eli~vLeKh~Ap~DLSLMvLGN~vTnii~~V~~~q-------R~~iAe~Fa~AL~ 59 (62)
T d2otaa1 10 IQDLLDVLVKEEVTPDLALMCLGNAVTNIIAQVPESK-------RVAVVDNFTKALK 59 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCGGG-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhCCHHH-------HHHHHHHHHHHHH
Confidence 3333333433445556778899998888774433222 5666666654443
No 4
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=4.35 E-value=3.8e+02 Score=22.67 Aligned_cols=29 Identities=7% Similarity=0.000 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCCCCcc
Q 048748 372 IVCGIGLLFGIVLGVLAYITTEKSSPPRK 400 (530)
Q Consensus 372 ~~~~~~~~i~~~l~i~~~~~t~~~~pP~~ 400 (530)
..|++...+++..+.+.|+..+.+.+|++
T Consensus 16 ~~wl~~~~~~m~~~tv~f~~~~~~~~~~~ 44 (236)
T d1uaza_ 16 TLWLGIGTLLMLIGTFYFIVKGWGVTDKE 44 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred eehHHHHHHHHHHHHHHHHHHHccCCCCc
Confidence 34554455555555555555555544433
No 5
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.16 E-value=3.6e+02 Score=17.67 Aligned_cols=16 Identities=13% Similarity=0.343 Sum_probs=8.4
Q ss_pred chhhHhhhhhhhHHHH
Q 048748 340 KPVAVTSVTLAPVLLS 355 (530)
Q Consensus 340 k~l~~~~~~~~P~~~~ 355 (530)
|.+.++..+..|.-+.
T Consensus 7 k~lT~it~iflP~t~i 22 (64)
T d2iuba2 7 KVLTIIATIFMPLTFI 22 (64)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455556666664433
No 6
>d1mvfd_ b.129.1.1 (D:) MazE {Escherichia coli [TaxId: 562]}
Probab=4.01 E-value=49 Score=21.16 Aligned_cols=6 Identities=67% Similarity=1.370 Sum_probs=3.4
Q ss_pred HHhcHH
Q 048748 449 WGNSIG 454 (530)
Q Consensus 449 ~GnSi~ 454 (530)
||||.+
T Consensus 6 wGNS~g 11 (44)
T d1mvfd_ 6 WGNSPA 11 (44)
T ss_dssp ETTEEE
T ss_pred Eeccee
Confidence 566654
No 7
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=3.63 E-value=4.2e+02 Score=16.24 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 048748 410 FLMSVTWSYITAQELVALL 428 (530)
Q Consensus 410 F~~Sv~wI~~~A~elV~ll 428 (530)
=+.+.+|....|..+++.-
T Consensus 12 PVla~~w~~~tAG~lIEiN 30 (41)
T d1jb0j_ 12 PVLAAIWMTITAGILIEFN 30 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567788888888887653
No 8
>d1lr7a1 g.3.11.3 (A:64-88) Domain of follistatin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.61 E-value=1.5e+02 Score=16.13 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=12.1
Q ss_pred cccccccccccccccceeccc
Q 048748 47 GCKAFQKLDDYRAKCLYLKYN 67 (530)
Q Consensus 47 ~C~~~~~~~~~~~~C~fv~~~ 67 (530)
+|+++.--+ ..||..-|.+
T Consensus 2 tcdnvdcgp--gk~c~mnrrn 20 (26)
T d1lr7a1 2 TCENVDCGP--GKKCRMNKKN 20 (26)
T ss_dssp CSTTCCCCT--TEEEEECTTS
T ss_pred cccccccCC--CccccccccC
Confidence 566665443 4778887755
No 9
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=3.58 E-value=1.6e+02 Score=19.70 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=12.3
Q ss_pred HHHhCCCchhhhhhH
Q 048748 124 SRLLKLSPTIAGVTL 138 (530)
Q Consensus 124 s~~l~ls~~v~Gvtl 138 (530)
++.+|+|..++|+.+
T Consensus 2 akefgipa~ia~~vl 16 (70)
T d1o82a_ 2 AKEFGIPAAVAGTVL 16 (70)
T ss_dssp HHHHCCCHHHHHHHH
T ss_pred chhhCCcHHHHHHHH
Confidence 678899999998765
No 10
>d1ehsa_ g.2.1.1 (A:) Heat-stable enterotoxin B {Escherichia coli [TaxId: 562]}
Probab=3.39 E-value=2.1e+02 Score=17.55 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=13.4
Q ss_pred HcCCCCcccchheecchhhHH
Q 048748 464 LNGGAQGAQIAVSGCYAGPIF 484 (530)
Q Consensus 464 ~~G~~~~~~mAi~ac~Gsplf 484 (530)
++|+-|.-+=.-++|||..+.
T Consensus 22 kkgflgvrdgtagacfgaqim 42 (48)
T d1ehsa_ 22 KKGFLGVRDGTAGACFGAQIM 42 (48)
T ss_dssp HSCSSSSSSSSCCTTTTTHHH
T ss_pred hcccceeccCccccccchhHh
Confidence 556554335556788888764
Done!