BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048749
(536 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 192 GILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKN 251
GI+L+ A GVFD K+F L F+ L L +E+ E+ S +N
Sbjct: 76 GIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRN 135
Query: 252 EFGYDI 257
G+DI
Sbjct: 136 TGGFDI 141
>pdb|1ZH0|A Chain A, Crystal Structure Of L-3-(2-Napthyl)alanine-Trna
Synthetase In Complex With L-3-(2-Napthyl)alanine
Length = 314
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 136 WEAAYTFFKWVSREGDYSPGSNVFN-AILDVLGRARRFVELIQVFDEMPDLVNEKTYGIL 194
+A Y + + DY+ NV+ A+ L RARR +ELI DE P V E Y I+
Sbjct: 98 LKAKYVYGSSFQLDKDYT--LNVYRLALKTTLKRARRSMELIAREDENPK-VAEVIYPIM 154
Query: 195 LNRYAAAHMVEEAIGVFDRRK 215
A V+ +G ++RK
Sbjct: 155 QVNPAHYQGVDVVVGGMEQRK 175
>pdb|2HGZ|A Chain A, Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trna
Synthetase
Length = 306
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 136 WEAAYTFFKWVSREGDYSPGSNVFN-AILDVLGRARRFVELIQVFDEMPDLVNEKTYGIL 194
+A Y + + DY+ NV+ A+ L RARR +ELI DE P V E Y I+
Sbjct: 97 LKAKYVYGSPFQLDKDYT--LNVYRLALKTTLKRARRSMELIAREDENPK-VAEVIYPIM 153
Query: 195 LNRYAAAHMVEEAIGVFDRRK 215
+ V+ A+G ++RK
Sbjct: 154 QVNTSHRLGVDVAVGGMEQRK 174
>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
pdb|1U7X|B Chain B, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
Length = 312
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 136 WEAAYTFFKWVSREGDYSPGSNVFN-AILDVLGRARRFVELIQVFDEMPDLVNEKTYGIL 194
+A Y + + DY+ NV+ A+ L RARR +ELI DE P V E Y I+
Sbjct: 98 LKAKYVYGSTFQLDKDYT--LNVYRLALKTTLKRARRSMELIAREDENPK-VAEVIYPIM 154
Query: 195 LNRYAAAHMVEEAIGVFDRRK 215
V+ A+G ++RK
Sbjct: 155 QVNAIHYPGVDVAVGGMEQRK 175
>pdb|2ZP1|A Chain A, Structual Basis Of Iodo-Tyrosine Recognition By Engineered
Archeal Tyrosyl-Trna Synthetase
Length = 314
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 136 WEAAYTFFKWVSREGDYSPGSNVFN-AILDVLGRARRFVELIQVFDEMPDLVNEKTYGIL 194
+A Y + + DY+ NV+ A+ L RARR +ELI DE P V E Y I+
Sbjct: 98 LKAKYVYGSEFQLDKDYT--LNVYRLALKTTLKRARRSMELIAREDENPK-VAEVIYPIM 154
Query: 195 LNRYAAAHMVEEAIGVFDRRK 215
+ V+ A+G ++RK
Sbjct: 155 QVNTSHYLGVDVAVGGMEQRK 175
>pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna
Sythetase In Complex With P-Bromo-L-Phenylalanine
Length = 314
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 136 WEAAYTFFKWVSREGDYSPGSNVFN-AILDVLGRARRFVELIQVFDEMPDLVNEKTYGIL 194
+A Y + + DY+ NV+ A+ L RARR +ELI DE P V E Y I+
Sbjct: 98 LKAKYVYGSSFQLDKDYT--LNVYRLALKTTLKRARRSMELIAREDENPK-VAEVIYPIM 154
Query: 195 LNRYAAAHMVEEAIGVFDRRK 215
V+ A+G ++RK
Sbjct: 155 QVNPLHYEGVDVAVGGMEQRK 175
>pdb|1ZH6|A Chain A, Crystal Structure Of P-Acetylphenylalanine-Trna Synthetase
In Complex With P-Acetylphenylalanine
Length = 314
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 136 WEAAYTFFKWVSREGDYSPGSNVFN-AILDVLGRARRFVELIQVFDEMPDLVNEKTYGIL 194
+A Y + + DY+ NV+ A+ L RARR +ELI DE P V E Y I+
Sbjct: 98 LKAKYVYGSEFQLDKDYT--LNVYRLALKTTLKRARRSMELIAREDENPK-VAEVIYPIM 154
Query: 195 LNRYAAAHMVEEAIGVFDRRK 215
V+ A+G ++RK
Sbjct: 155 QVNGCHYRGVDVAVGGMEQRK 175
>pdb|2FCL|A Chain A, Crystal Structure Of A Putative Nucleotidyltransferase
(Tm1012) From Thermotoga Maritima At 1.35 A Resolution
Length = 169
Score = 28.9 bits (63), Expect = 6.8, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 39 VTSHKTLIPIINLQARNSEFLFLGRIETAQLVHSLAN 75
V +H IP+++L+ +L LGR+E A+ + N
Sbjct: 130 VETHGMXIPVLSLEYEYQAYLXLGRVEXAETLRXWLN 166
>pdb|3D6U|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
pdb|3D6V|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
Length = 314
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 136 WEAAYTFFKWVSREGDYSPGSNVFN-AILDVLGRARRFVELIQVFDEMPDLVNEKTYGIL 194
+A Y + + DY+ NV+ A+ L RARR +ELI DE P V E Y I+
Sbjct: 98 LKAKYVYGSSFMLDKDYT--LNVYRLALKTTLKRARRSMELIAREDENPK-VAEVIYPIM 154
Query: 195 LNRYAAAHMVEEAIGVFDRRK 215
V+ A+G ++RK
Sbjct: 155 QVNPLHYEGVDVAVGGMEQRK 175
>pdb|3QE4|A Chain A, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
pdb|3QE4|B Chain B, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
Length = 312
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 137 EAAYTFFKWVSREGDYSPGSNVFN-AILDVLGRARRFVELIQVFDEMPDLVNEKTYGILL 195
+A Y + + DY+ NV+ A+ L RARR +ELI DE P V E Y I+
Sbjct: 99 KAKYVYGSEWMLDKDYT--LNVYRLALKTTLKRARRSMELIAREDENPK-VAEVIYPIMQ 155
Query: 196 NRYAAAHMVEEAIGVFDRRK 215
A V+ A+G ++RK
Sbjct: 156 VNGAHYLGVDVAVGGMEQRK 175
>pdb|3LL6|A Chain A, Crystal Structure Of The Human Cyclin G Associated Kinase
(gak)
pdb|3LL6|B Chain B, Crystal Structure Of The Human Cyclin G Associated Kinase
(gak)
Length = 337
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 322 GRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLP----NVTTYNSLIKHLCKIKR 377
G K D+ CI+ LCF++ E LR + + +P T ++SLI+ + ++
Sbjct: 231 GEKQDIWALGCILYLLCFRQHPFEDGAKLRIVNGKYSIPPHDTQYTVFHSLIRAMLQVNP 290
Query: 378 ME--TVYEYLDEMEQ 390
E ++ E + ++++
Sbjct: 291 EERLSIAEVVHQLQE 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,152,439
Number of Sequences: 62578
Number of extensions: 688423
Number of successful extensions: 1646
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1640
Number of HSP's gapped (non-prelim): 20
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)