Query 048749
Match_columns 536
No_of_seqs 677 out of 2946
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 12:44:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 4.3E-62 9.4E-67 513.0 54.9 411 123-536 371-789 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 7.6E-62 1.7E-66 511.2 52.5 451 74-528 384-874 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 7.1E-63 1.5E-67 528.6 42.4 501 22-535 82-624 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 1.4E-60 3.1E-65 510.9 43.6 499 21-535 182-725 (857)
5 PLN03081 pentatricopeptide (PP 100.0 5.7E-58 1.2E-62 479.5 45.6 429 90-534 86-561 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.7E-56 3.7E-61 468.4 43.0 396 91-502 123-564 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.9E-24 1.3E-28 232.8 50.6 380 135-528 514-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.6E-23 5.6E-28 227.7 51.8 386 132-531 477-867 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.2E-21 2.7E-26 192.7 35.1 301 163-502 42-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 2.1E-20 4.6E-25 183.9 36.0 308 114-431 29-353 (389)
11 PRK11447 cellulose synthase su 99.9 9.4E-17 2E-21 177.3 53.2 390 130-535 279-746 (1157)
12 PRK15174 Vi polysaccharide exp 99.9 6E-17 1.3E-21 167.4 44.8 316 133-460 55-381 (656)
13 PRK15174 Vi polysaccharide exp 99.8 6.3E-17 1.4E-21 167.3 40.7 327 158-495 44-381 (656)
14 TIGR00990 3a0801s09 mitochondr 99.8 3.6E-16 7.7E-21 162.2 46.4 81 133-216 140-222 (615)
15 PRK11447 cellulose synthase su 99.8 1E-15 2.3E-20 169.1 52.6 359 165-530 278-700 (1157)
16 KOG4626 O-linked N-acetylgluco 99.8 1.2E-17 2.5E-22 157.7 30.1 354 134-500 130-488 (966)
17 KOG4626 O-linked N-acetylgluco 99.8 9.6E-17 2.1E-21 151.7 30.9 397 121-535 83-488 (966)
18 PRK10049 pgaA outer membrane p 99.8 1.7E-15 3.7E-20 160.0 42.2 408 90-511 17-470 (765)
19 PRK10049 pgaA outer membrane p 99.8 6.2E-15 1.4E-19 155.8 46.4 400 119-529 12-455 (765)
20 PRK14574 hmsH outer membrane p 99.8 3.9E-14 8.5E-19 147.1 49.2 395 124-527 38-510 (822)
21 TIGR00990 3a0801s09 mitochondr 99.8 2.8E-14 6E-19 148.2 46.6 354 133-495 173-571 (615)
22 KOG4422 Uncharacterized conser 99.8 8.8E-14 1.9E-18 126.3 41.3 318 93-430 121-467 (625)
23 PRK14574 hmsH outer membrane p 99.7 4.1E-12 8.9E-17 132.2 50.0 395 107-509 85-525 (822)
24 PRK09782 bacteriophage N4 rece 99.7 1.2E-11 2.6E-16 131.5 49.4 381 133-530 195-706 (987)
25 KOG4422 Uncharacterized conser 99.7 1.4E-12 3E-17 118.7 34.4 338 153-498 204-593 (625)
26 PRK09782 bacteriophage N4 rece 99.6 1.2E-11 2.5E-16 131.6 42.6 311 135-459 357-705 (987)
27 KOG2002 TPR-containing nuclear 99.6 3.1E-12 6.7E-17 127.9 35.2 412 109-527 222-742 (1018)
28 PRK10747 putative protoheme IX 99.6 3.2E-12 7E-17 124.8 34.4 282 169-494 97-389 (398)
29 KOG2076 RNA polymerase III tra 99.6 4.6E-11 1E-15 118.8 40.4 393 133-528 152-693 (895)
30 TIGR00540 hemY_coli hemY prote 99.6 6.9E-12 1.5E-16 123.2 33.3 62 432-493 336-397 (409)
31 PF13429 TPR_15: Tetratricopep 99.6 3.3E-14 7.2E-19 132.6 13.0 252 132-389 20-275 (280)
32 TIGR00540 hemY_coli hemY prote 99.6 2.8E-11 6E-16 118.9 33.6 290 200-527 96-396 (409)
33 PRK10747 putative protoheme IX 99.6 3.2E-11 6.9E-16 117.8 33.6 250 131-390 129-389 (398)
34 PF13429 TPR_15: Tetratricopep 99.6 4.4E-14 9.6E-19 131.8 12.8 258 161-458 13-275 (280)
35 COG2956 Predicted N-acetylgluc 99.5 6.4E-11 1.4E-15 104.4 30.3 298 90-391 39-347 (389)
36 KOG2076 RNA polymerase III tra 99.5 2.3E-10 5E-15 114.0 37.5 362 161-525 144-550 (895)
37 KOG4318 Bicoid mRNA stability 99.5 1.6E-12 3.4E-17 128.4 20.0 274 209-517 11-287 (1088)
38 KOG1155 Anaphase-promoting com 99.5 6.8E-10 1.5E-14 102.6 35.5 95 430-525 431-531 (559)
39 COG3071 HemY Uncharacterized e 99.5 1.2E-09 2.6E-14 99.4 36.5 288 202-500 98-395 (400)
40 KOG1126 DNA-binding cell divis 99.5 9.5E-12 2.1E-16 119.9 24.2 273 203-494 334-619 (638)
41 KOG2003 TPR repeat-containing 99.5 1.4E-10 3E-15 106.6 30.3 245 266-518 428-711 (840)
42 KOG1126 DNA-binding cell divis 99.5 2.4E-11 5.2E-16 117.2 25.0 283 171-464 334-624 (638)
43 COG2956 Predicted N-acetylgluc 99.5 3.2E-10 6.9E-15 100.0 28.9 219 170-392 49-279 (389)
44 KOG1915 Cell cycle control pro 99.4 9.8E-09 2.1E-13 95.3 37.9 385 133-529 86-535 (677)
45 KOG2002 TPR-containing nuclear 99.4 3.4E-09 7.4E-14 106.6 37.7 380 135-527 145-556 (1018)
46 KOG1156 N-terminal acetyltrans 99.4 7.8E-09 1.7E-13 99.7 37.3 102 428-532 366-470 (700)
47 KOG0495 HAT repeat protein [RN 99.4 5.4E-08 1.2E-12 94.0 42.7 381 135-529 421-879 (913)
48 PRK12370 invasion protein regu 99.4 2.3E-10 5E-15 116.8 26.7 265 185-460 253-535 (553)
49 KOG2003 TPR repeat-containing 99.4 4.4E-09 9.5E-14 96.9 31.7 353 133-493 250-720 (840)
50 KOG0495 HAT repeat protein [RN 99.4 9.6E-08 2.1E-12 92.3 41.6 344 135-492 391-779 (913)
51 TIGR02521 type_IV_pilW type IV 99.4 7.6E-10 1.7E-14 100.3 26.9 198 190-390 33-231 (234)
52 COG3071 HemY Uncharacterized e 99.4 7E-09 1.5E-13 94.6 31.8 292 235-534 96-394 (400)
53 KOG1155 Anaphase-promoting com 99.4 3.7E-09 8.1E-14 97.8 30.2 284 162-455 233-531 (559)
54 TIGR02521 type_IV_pilW type IV 99.4 6.6E-10 1.4E-14 100.7 25.9 198 155-355 30-231 (234)
55 PRK12370 invasion protein regu 99.4 4.9E-10 1.1E-14 114.4 27.5 248 171-425 276-535 (553)
56 KOG1915 Cell cycle control pro 99.4 2.8E-08 6.1E-13 92.3 35.2 351 134-495 155-536 (677)
57 PF12569 NARP1: NMDA receptor- 99.3 5.2E-09 1.1E-13 103.4 32.1 294 158-494 6-333 (517)
58 KOG4318 Bicoid mRNA stability 99.3 3.6E-10 7.9E-15 112.1 23.5 244 143-411 13-283 (1088)
59 PF13041 PPR_2: PPR repeat fam 99.3 4.3E-12 9.4E-17 83.2 6.3 49 429-477 1-49 (50)
60 PF13041 PPR_2: PPR repeat fam 99.3 5.3E-12 1.2E-16 82.8 6.6 49 255-303 1-49 (50)
61 KOG1129 TPR repeat-containing 99.3 7.4E-10 1.6E-14 97.8 19.4 230 192-460 227-458 (478)
62 KOG0547 Translocase of outer m 99.3 3.3E-08 7.1E-13 92.3 30.8 350 134-494 129-565 (606)
63 KOG1173 Anaphase-promoting com 99.2 3.4E-08 7.5E-13 93.9 28.4 287 191-514 247-535 (611)
64 KOG1173 Anaphase-promoting com 99.2 4.1E-08 8.9E-13 93.4 26.9 285 152-478 240-534 (611)
65 KOG1129 TPR repeat-containing 99.2 3.4E-09 7.4E-14 93.7 17.9 230 160-392 227-459 (478)
66 KOG2047 mRNA splicing factor [ 99.1 3.8E-06 8.3E-11 81.5 38.4 389 123-526 142-611 (835)
67 PF12569 NARP1: NMDA receptor- 99.1 3.5E-07 7.6E-12 90.6 32.5 293 195-529 11-333 (517)
68 KOG1174 Anaphase-promoting com 99.1 4.5E-07 9.9E-12 83.1 29.8 266 219-494 228-499 (564)
69 KOG1840 Kinesin light chain [C 99.1 1.3E-07 2.9E-12 92.4 28.3 244 223-493 199-477 (508)
70 KOG1840 Kinesin light chain [C 99.1 2.8E-08 6.1E-13 97.1 23.5 244 187-458 198-477 (508)
71 KOG1156 N-terminal acetyltrans 99.1 1.4E-05 3E-10 77.9 39.2 390 124-527 79-508 (700)
72 PRK11189 lipoprotein NlpI; Pro 99.1 1.9E-07 4.2E-12 87.3 26.5 216 135-357 41-266 (296)
73 KOG0547 Translocase of outer m 99.1 4.8E-08 1E-12 91.2 21.2 222 129-355 335-565 (606)
74 COG3063 PilF Tfp pilus assembl 99.0 4.4E-07 9.5E-12 77.0 24.6 196 192-390 39-235 (250)
75 cd05804 StaR_like StaR_like; a 99.0 3.7E-06 8E-11 81.6 34.2 60 436-495 269-336 (355)
76 PRK11189 lipoprotein NlpI; Pro 99.0 8.2E-07 1.8E-11 83.1 28.3 95 260-356 67-161 (296)
77 KOG2047 mRNA splicing factor [ 99.0 5.2E-06 1.1E-10 80.6 32.9 332 156-494 248-650 (835)
78 COG3063 PilF Tfp pilus assembl 99.0 5.6E-07 1.2E-11 76.3 23.4 203 158-365 37-243 (250)
79 cd05804 StaR_like StaR_like; a 99.0 3.6E-06 7.8E-11 81.7 32.4 196 157-354 7-213 (355)
80 KOG3785 Uncharacterized conser 98.9 3.3E-05 7.1E-10 69.8 34.4 383 124-530 61-490 (557)
81 KOG1174 Anaphase-promoting com 98.9 7.1E-06 1.5E-10 75.5 29.4 252 135-392 211-501 (564)
82 KOG2376 Signal recognition par 98.9 7.5E-05 1.6E-09 72.1 35.7 149 168-322 91-254 (652)
83 PF12854 PPR_1: PPR repeat 98.8 5.8E-09 1.3E-13 61.3 4.1 33 461-493 2-34 (34)
84 PRK04841 transcriptional regul 98.8 3.3E-05 7.2E-10 85.0 36.2 367 163-529 348-759 (903)
85 PF04733 Coatomer_E: Coatomer 98.8 3.7E-07 8.1E-12 84.2 17.6 66 428-494 198-264 (290)
86 KOG4340 Uncharacterized conser 98.8 9.7E-06 2.1E-10 71.4 24.7 301 135-456 25-335 (459)
87 KOG4162 Predicted calmodulin-b 98.8 8.5E-05 1.8E-09 74.0 33.7 370 152-527 319-780 (799)
88 KOG3785 Uncharacterized conser 98.8 3E-05 6.5E-10 70.0 27.9 221 260-499 288-518 (557)
89 PF04733 Coatomer_E: Coatomer 98.8 4.8E-07 1.1E-11 83.5 17.1 246 134-392 15-266 (290)
90 KOG4340 Uncharacterized conser 98.7 9.4E-06 2E-10 71.5 23.0 98 428-527 274-372 (459)
91 PF12854 PPR_1: PPR repeat 98.7 1.8E-08 3.9E-13 59.2 4.1 32 357-388 2-33 (34)
92 PRK04841 transcriptional regul 98.7 0.00014 2.9E-09 80.3 36.5 332 165-496 383-761 (903)
93 KOG0548 Molecular co-chaperone 98.7 8.6E-05 1.9E-09 71.0 29.0 373 133-527 15-452 (539)
94 KOG1070 rRNA processing protei 98.7 1.4E-05 3E-10 84.2 25.3 237 136-378 1441-1687(1710)
95 KOG0985 Vesicle coat protein c 98.7 0.0004 8.6E-09 71.3 34.4 379 117-526 837-1304(1666)
96 PLN02789 farnesyltranstransfer 98.6 4.8E-05 1E-09 71.3 26.2 200 171-374 52-267 (320)
97 KOG1128 Uncharacterized conser 98.6 3.3E-06 7.2E-11 83.2 18.5 222 153-392 395-617 (777)
98 PLN02789 farnesyltranstransfer 98.6 5.2E-05 1.1E-09 71.1 25.9 181 190-374 39-229 (320)
99 KOG1070 rRNA processing protei 98.6 4.6E-05 1E-09 80.5 26.9 135 254-391 1455-1593(1710)
100 KOG0624 dsRNA-activated protei 98.6 0.00031 6.7E-09 63.5 28.5 311 155-496 37-371 (504)
101 KOG2376 Signal recognition par 98.6 0.00082 1.8E-08 65.2 32.9 208 133-359 25-256 (652)
102 COG4783 Putative Zn-dependent 98.6 8.2E-05 1.8E-09 70.5 25.7 252 126-406 209-469 (484)
103 KOG1125 TPR repeat-containing 98.6 1.2E-05 2.6E-10 77.3 20.5 214 167-386 296-522 (579)
104 KOG3617 WD40 and TPR repeat-co 98.6 0.00042 9.1E-09 69.6 31.2 335 119-493 723-1107(1416)
105 KOG1914 mRNA cleavage and poly 98.5 0.00041 8.9E-09 66.5 29.3 86 110-199 10-97 (656)
106 PRK14720 transcript cleavage f 98.5 0.00012 2.6E-09 76.6 28.2 241 184-477 27-268 (906)
107 KOG1128 Uncharacterized conser 98.5 1.3E-05 2.9E-10 79.1 19.6 222 220-495 395-616 (777)
108 KOG0548 Molecular co-chaperone 98.5 0.00076 1.6E-08 64.8 30.6 222 134-361 50-332 (539)
109 TIGR03302 OM_YfiO outer membra 98.5 1.2E-05 2.7E-10 72.8 18.7 185 154-356 31-232 (235)
110 KOG1127 TPR repeat-containing 98.5 0.00017 3.6E-09 73.9 27.2 215 134-353 472-697 (1238)
111 TIGR03302 OM_YfiO outer membra 98.5 2.6E-05 5.7E-10 70.7 20.3 188 185-392 30-233 (235)
112 COG5010 TadD Flp pilus assembl 98.5 3.6E-05 7.8E-10 67.0 19.4 153 161-315 71-225 (257)
113 COG5010 TadD Flp pilus assembl 98.5 3.5E-05 7.7E-10 67.1 19.4 159 192-353 70-228 (257)
114 KOG4162 Predicted calmodulin-b 98.4 0.0026 5.6E-08 63.9 38.8 341 186-532 321-751 (799)
115 KOG1125 TPR repeat-containing 98.4 1.2E-05 2.6E-10 77.3 16.3 247 197-451 294-562 (579)
116 COG4783 Putative Zn-dependent 98.4 0.0012 2.7E-08 62.8 28.8 206 238-503 252-461 (484)
117 PRK10370 formate-dependent nit 98.4 9.5E-05 2.1E-09 64.4 20.1 14 304-317 156-169 (198)
118 PRK15179 Vi polysaccharide bio 98.4 0.00015 3.2E-09 75.1 24.3 181 152-340 82-268 (694)
119 KOG0985 Vesicle coat protein c 98.4 0.0048 1E-07 63.9 36.6 199 225-456 1106-1304(1666)
120 KOG1914 mRNA cleavage and poly 98.4 0.003 6.5E-08 60.8 30.0 367 153-526 17-497 (656)
121 KOG3617 WD40 and TPR repeat-co 98.3 0.0023 5.1E-08 64.6 30.3 31 429-459 1078-1108(1416)
122 PRK10370 formate-dependent nit 98.3 2.2E-05 4.7E-10 68.5 14.8 124 169-294 52-180 (198)
123 KOG3081 Vesicle coat complex C 98.3 0.0015 3.2E-08 57.3 25.1 244 134-391 22-271 (299)
124 PRK15179 Vi polysaccharide bio 98.3 7.4E-05 1.6E-09 77.3 20.6 180 117-305 83-268 (694)
125 KOG3060 Uncharacterized conser 98.3 0.0008 1.7E-08 58.4 22.9 187 202-392 26-221 (289)
126 TIGR00756 PPR pentatricopeptid 98.3 1.2E-06 2.6E-11 52.3 4.5 33 468-500 2-34 (35)
127 KOG3081 Vesicle coat complex C 98.3 0.00013 2.8E-09 63.6 18.2 173 140-320 93-270 (299)
128 KOG3616 Selective LIM binding 98.3 9.9E-05 2.2E-09 73.0 19.5 110 265-387 740-849 (1636)
129 KOG3616 Selective LIM binding 98.3 0.00091 2E-08 66.5 25.6 52 438-492 857-908 (1636)
130 PRK15359 type III secretion sy 98.3 5.7E-05 1.2E-09 62.2 15.1 90 159-249 27-118 (144)
131 KOG1127 TPR repeat-containing 98.3 0.0022 4.9E-08 66.1 28.4 395 125-527 497-949 (1238)
132 PRK14720 transcript cleavage f 98.2 0.001 2.2E-08 69.9 26.7 256 222-530 30-286 (906)
133 PF13812 PPR_3: Pentatricopept 98.2 2.9E-06 6.3E-11 50.2 4.5 33 467-499 2-34 (34)
134 PRK15359 type III secretion sy 98.2 7.5E-05 1.6E-09 61.5 14.4 93 193-286 29-121 (144)
135 TIGR02552 LcrH_SycD type III s 98.2 9.5E-05 2.1E-09 60.4 14.7 91 229-320 23-113 (135)
136 KOG2041 WD40 repeat protein [G 98.2 0.0063 1.4E-07 60.4 28.4 338 153-530 689-1086(1189)
137 TIGR00756 PPR pentatricopeptid 98.1 4.4E-06 9.6E-11 49.7 4.5 34 190-223 2-35 (35)
138 KOG3060 Uncharacterized conser 98.1 0.0013 2.8E-08 57.2 20.8 186 134-321 26-220 (289)
139 TIGR02552 LcrH_SycD type III s 98.1 0.00018 3.9E-09 58.7 14.1 97 189-286 18-114 (135)
140 PF13812 PPR_3: Pentatricopept 98.1 7E-06 1.5E-10 48.5 4.1 33 189-221 2-34 (34)
141 KOG0624 dsRNA-activated protei 98.0 0.011 2.3E-07 53.9 33.3 189 134-327 52-256 (504)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00032 7E-09 67.2 15.8 129 256-390 168-296 (395)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00032 7E-09 67.2 15.4 117 164-283 177-294 (395)
144 PF01535 PPR: PPR repeat; Int 97.9 9.3E-06 2E-10 46.8 3.1 30 468-497 2-31 (31)
145 PF09976 TPR_21: Tetratricopep 97.9 0.00087 1.9E-08 55.4 15.4 22 300-321 56-77 (145)
146 PF08579 RPM2: Mitochondrial r 97.9 0.00025 5.5E-09 53.3 10.5 79 296-374 29-116 (120)
147 PF09976 TPR_21: Tetratricopep 97.9 0.0013 2.7E-08 54.4 15.7 128 223-353 12-144 (145)
148 PF10037 MRP-S27: Mitochondria 97.9 0.00022 4.8E-09 68.6 12.5 125 251-375 60-186 (429)
149 PF10037 MRP-S27: Mitochondria 97.9 0.00031 6.8E-09 67.6 13.4 124 217-340 60-186 (429)
150 PF08579 RPM2: Mitochondrial r 97.8 0.0004 8.7E-09 52.3 10.3 81 434-514 28-117 (120)
151 PF01535 PPR: PPR repeat; Int 97.8 3.6E-05 7.8E-10 44.2 3.5 30 190-219 2-31 (31)
152 cd00189 TPR Tetratricopeptide 97.7 0.00082 1.8E-08 50.4 11.4 92 192-284 4-95 (100)
153 PF06239 ECSIT: Evolutionarily 97.7 0.00061 1.3E-08 58.1 10.7 75 341-417 66-156 (228)
154 PF05843 Suf: Suppressor of fo 97.6 0.00086 1.9E-08 62.1 12.5 129 190-320 3-135 (280)
155 PF06239 ECSIT: Evolutionarily 97.6 0.0016 3.6E-08 55.5 12.7 105 185-307 44-153 (228)
156 PF05843 Suf: Suppressor of fo 97.6 0.0018 4E-08 60.0 14.4 145 258-409 2-150 (280)
157 KOG2053 Mitochondrial inherita 97.6 0.11 2.4E-06 53.6 40.9 218 134-357 23-256 (932)
158 cd00189 TPR Tetratricopeptide 97.6 0.0011 2.3E-08 49.7 11.0 94 260-355 3-96 (100)
159 PF14938 SNAP: Soluble NSF att 97.6 0.029 6.3E-07 52.2 21.6 92 301-392 123-226 (282)
160 PF14938 SNAP: Soluble NSF att 97.5 0.011 2.5E-07 54.9 18.7 145 229-388 100-263 (282)
161 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0035 7.5E-08 49.6 13.3 96 191-286 5-105 (119)
162 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0039 8.4E-08 49.3 13.0 97 260-356 5-105 (119)
163 PRK02603 photosystem I assembl 97.5 0.0067 1.5E-07 51.7 14.8 82 191-272 38-121 (172)
164 PRK10866 outer membrane biogen 97.4 0.04 8.7E-07 49.8 19.6 58 436-493 180-239 (243)
165 KOG2041 WD40 repeat protein [G 97.4 0.18 3.9E-06 50.6 25.0 306 134-495 748-1086(1189)
166 PF12688 TPR_5: Tetratrico pep 97.4 0.0083 1.8E-07 47.1 13.1 91 194-284 7-102 (120)
167 PF12895 Apc3: Anaphase-promot 97.4 0.00038 8.2E-09 51.3 5.3 80 134-213 3-83 (84)
168 KOG2053 Mitochondrial inherita 97.4 0.24 5.1E-06 51.4 38.1 213 107-322 30-256 (932)
169 PF04840 Vps16_C: Vps16, C-ter 97.3 0.085 1.8E-06 49.6 21.6 110 259-388 179-288 (319)
170 PLN03088 SGT1, suppressor of 97.3 0.006 1.3E-07 58.7 14.4 90 196-286 10-99 (356)
171 PRK02603 photosystem I assembl 97.3 0.014 3E-07 49.8 15.1 83 259-342 37-121 (172)
172 PF12895 Apc3: Anaphase-promot 97.3 0.00072 1.6E-08 49.8 6.2 79 202-281 3-82 (84)
173 CHL00033 ycf3 photosystem I as 97.3 0.0075 1.6E-07 51.2 13.2 58 191-248 38-97 (168)
174 PRK15363 pathogenicity island 97.3 0.0072 1.6E-07 49.3 12.1 94 260-355 38-131 (157)
175 PRK10866 outer membrane biogen 97.3 0.066 1.4E-06 48.4 19.6 54 233-286 42-98 (243)
176 PLN03088 SGT1, suppressor of 97.3 0.0078 1.7E-07 57.9 14.5 90 231-321 10-99 (356)
177 PRK15363 pathogenicity island 97.3 0.0054 1.2E-07 50.0 11.0 92 156-248 35-128 (157)
178 PRK10153 DNA-binding transcrip 97.2 0.034 7.4E-07 56.1 18.8 139 251-392 331-483 (517)
179 CHL00033 ycf3 photosystem I as 97.1 0.011 2.5E-07 50.1 12.6 60 226-285 38-100 (168)
180 PF12688 TPR_5: Tetratrico pep 97.1 0.051 1.1E-06 42.7 14.8 105 263-373 7-117 (120)
181 PRK10153 DNA-binding transcrip 97.1 0.037 8.1E-07 55.8 17.5 63 292-356 420-482 (517)
182 PF14559 TPR_19: Tetratricopep 97.0 0.0028 6.1E-08 44.3 6.6 53 339-392 3-55 (68)
183 KOG2796 Uncharacterized conser 97.0 0.038 8.2E-07 48.6 14.1 57 192-248 181-237 (366)
184 PF03704 BTAD: Bacterial trans 96.9 0.01 2.3E-07 49.0 10.0 77 432-509 63-144 (146)
185 KOG0553 TPR repeat-containing 96.9 0.014 3.1E-07 52.3 10.9 101 302-408 91-191 (304)
186 KOG0550 Molecular chaperone (D 96.8 0.45 9.7E-06 45.0 21.0 166 290-495 166-350 (486)
187 PF14559 TPR_19: Tetratricopep 96.8 0.0038 8.3E-08 43.6 5.5 47 201-248 4-50 (68)
188 COG4235 Cytochrome c biogenesi 96.7 0.063 1.4E-06 48.5 14.0 103 184-287 152-257 (287)
189 PF13432 TPR_16: Tetratricopep 96.7 0.0093 2E-07 41.2 7.1 53 267-320 7-59 (65)
190 COG3898 Uncharacterized membra 96.7 0.53 1.2E-05 44.2 32.9 314 135-500 68-397 (531)
191 PF13525 YfiO: Outer membrane 96.7 0.24 5.2E-06 43.5 17.6 82 433-518 112-195 (203)
192 PF13432 TPR_16: Tetratricopep 96.7 0.0098 2.1E-07 41.1 7.0 58 334-392 4-61 (65)
193 PF13525 YfiO: Outer membrane 96.7 0.049 1.1E-06 47.8 12.9 54 163-216 12-70 (203)
194 PF12921 ATP13: Mitochondrial 96.7 0.05 1.1E-06 43.2 11.5 88 430-517 1-104 (126)
195 PF13414 TPR_11: TPR repeat; P 96.6 0.0066 1.4E-07 42.5 5.9 59 189-248 4-63 (69)
196 KOG0553 TPR repeat-containing 96.6 0.027 5.9E-07 50.6 10.7 96 234-332 92-187 (304)
197 PF13414 TPR_11: TPR repeat; P 96.6 0.012 2.7E-07 41.1 7.2 62 258-320 4-66 (69)
198 KOG1538 Uncharacterized conser 96.6 0.77 1.7E-05 46.0 21.1 60 436-497 778-848 (1081)
199 COG4235 Cytochrome c biogenesi 96.6 0.099 2.2E-06 47.3 14.0 119 136-257 138-261 (287)
200 KOG2796 Uncharacterized conser 96.6 0.094 2E-06 46.2 13.3 134 258-392 178-316 (366)
201 PF03704 BTAD: Bacterial trans 96.5 0.019 4.1E-07 47.4 9.0 69 260-329 65-138 (146)
202 PF09205 DUF1955: Domain of un 96.5 0.29 6.3E-06 38.3 14.8 141 198-359 12-152 (161)
203 COG4700 Uncharacterized protei 96.3 0.51 1.1E-05 39.5 16.7 123 220-346 86-212 (251)
204 PF13371 TPR_9: Tetratricopept 96.3 0.029 6.2E-07 39.7 7.7 67 438-507 2-68 (73)
205 PRK10803 tol-pal system protei 96.3 0.089 1.9E-06 48.0 12.3 86 268-355 154-245 (263)
206 KOG0550 Molecular chaperone (D 96.2 1.2 2.6E-05 42.3 24.3 248 135-392 64-351 (486)
207 PF12921 ATP13: Mitochondrial 96.2 0.091 2E-06 41.7 10.5 48 323-370 48-96 (126)
208 PRK10803 tol-pal system protei 96.2 0.12 2.5E-06 47.3 12.5 62 259-320 182-245 (263)
209 PF07079 DUF1347: Protein of u 96.1 1.4 2.9E-05 42.5 32.6 381 134-527 20-521 (549)
210 PF04053 Coatomer_WDAD: Coatom 96.1 0.24 5.3E-06 48.9 15.3 153 168-352 273-427 (443)
211 KOG1130 Predicted G-alpha GTPa 96.1 0.14 3.1E-06 48.1 12.6 224 164-388 25-301 (639)
212 KOG3941 Intermediate in Toll s 96.1 0.12 2.7E-06 46.0 11.4 129 174-320 52-187 (406)
213 PF13371 TPR_9: Tetratricopept 96.0 0.034 7.4E-07 39.3 6.9 54 164-217 3-58 (73)
214 PF13281 DUF4071: Domain of un 96.0 1.5 3.2E-05 41.9 21.4 33 360-392 303-335 (374)
215 PF13281 DUF4071: Domain of un 96.0 1.5 3.2E-05 41.9 23.8 31 465-495 304-334 (374)
216 KOG2280 Vacuolar assembly/sort 95.9 2.3 5.1E-05 43.5 25.5 308 161-490 442-794 (829)
217 PF04840 Vps16_C: Vps16, C-ter 95.9 1.5 3.3E-05 41.3 26.6 81 397-490 206-286 (319)
218 KOG1130 Predicted G-alpha GTPa 95.9 0.072 1.6E-06 49.9 9.6 257 134-390 31-343 (639)
219 PF13424 TPR_12: Tetratricopep 95.8 0.024 5.1E-07 40.8 5.4 64 431-494 5-74 (78)
220 PF09205 DUF1955: Domain of un 95.8 0.72 1.6E-05 36.2 14.2 139 339-498 14-152 (161)
221 PF08631 SPO22: Meiosis protei 95.8 1.7 3.6E-05 40.4 24.1 164 224-389 85-273 (278)
222 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.15 3.2E-06 49.3 10.9 66 428-495 72-141 (453)
223 PF10300 DUF3808: Protein of u 95.6 0.79 1.7E-05 46.0 16.7 119 270-391 246-376 (468)
224 COG4700 Uncharacterized protei 95.6 1.2 2.6E-05 37.4 18.8 130 254-387 86-218 (251)
225 PF04053 Coatomer_WDAD: Coatom 95.5 1.6 3.4E-05 43.3 18.2 160 195-388 268-428 (443)
226 PF13424 TPR_12: Tetratricopep 95.5 0.023 4.9E-07 40.9 4.3 24 225-248 48-71 (78)
227 PRK15331 chaperone protein Sic 95.5 0.6 1.3E-05 38.6 12.7 87 302-390 47-133 (165)
228 smart00299 CLH Clathrin heavy 95.5 1.1 2.4E-05 36.5 15.7 129 119-268 7-136 (140)
229 KOG3941 Intermediate in Toll s 95.5 0.2 4.3E-06 44.7 10.4 33 341-373 86-118 (406)
230 COG3898 Uncharacterized membra 95.3 2.6 5.7E-05 39.8 29.7 217 304-529 166-391 (531)
231 PF13170 DUF4003: Protein of u 95.2 2.6 5.7E-05 39.3 20.7 131 344-474 79-225 (297)
232 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.22 4.7E-06 48.2 10.6 66 289-356 72-141 (453)
233 PRK15331 chaperone protein Sic 95.2 0.86 1.9E-05 37.7 12.6 89 266-356 46-134 (165)
234 COG5107 RNA14 Pre-mRNA 3'-end 95.2 3.3 7E-05 40.0 20.6 146 257-410 397-546 (660)
235 COG4105 ComL DNA uptake lipopr 94.9 2.6 5.6E-05 37.6 18.7 72 163-234 41-117 (254)
236 KOG1538 Uncharacterized conser 94.9 1.6 3.4E-05 43.9 15.5 194 143-356 623-846 (1081)
237 PF10300 DUF3808: Protein of u 94.8 1.6 3.5E-05 43.9 16.3 174 139-320 176-375 (468)
238 COG3118 Thioredoxin domain-con 94.8 3.1 6.8E-05 37.9 16.2 50 166-215 144-195 (304)
239 KOG2280 Vacuolar assembly/sort 94.8 5.8 0.00013 40.9 22.5 319 117-455 427-794 (829)
240 COG5107 RNA14 Pre-mRNA 3'-end 94.7 4.3 9.3E-05 39.2 33.3 147 362-514 397-548 (660)
241 smart00299 CLH Clathrin heavy 94.6 2.1 4.4E-05 34.9 15.2 84 193-283 12-95 (140)
242 KOG1920 IkappaB kinase complex 94.5 5 0.00011 43.6 19.1 155 169-354 893-1053(1265)
243 PF08631 SPO22: Meiosis protei 94.5 4 8.7E-05 37.8 25.7 161 329-493 86-273 (278)
244 PF13170 DUF4003: Protein of u 94.4 4.4 9.5E-05 37.8 19.4 126 204-331 78-221 (297)
245 KOG0543 FKBP-type peptidyl-pro 94.2 1.1 2.3E-05 42.6 12.4 61 259-320 259-319 (397)
246 KOG2610 Uncharacterized conser 94.2 1.3 2.9E-05 40.7 12.5 151 200-352 115-272 (491)
247 KOG0543 FKBP-type peptidyl-pro 94.2 0.64 1.4E-05 44.0 10.9 141 162-321 214-355 (397)
248 KOG2114 Vacuolar assembly/sort 94.0 0.92 2E-05 46.9 12.3 182 189-390 335-518 (933)
249 KOG1550 Extracellular protein 94.0 6.1 0.00013 40.8 18.7 180 136-323 228-428 (552)
250 PF13512 TPR_18: Tetratricopep 93.9 1.2 2.6E-05 35.9 10.4 80 157-236 11-95 (142)
251 COG3629 DnrI DNA-binding trans 93.8 0.6 1.3E-05 42.5 9.6 77 156-232 153-236 (280)
252 PF07079 DUF1347: Protein of u 93.7 7.2 0.00016 37.8 37.1 370 114-493 73-522 (549)
253 PF13512 TPR_18: Tetratricopep 93.6 2.6 5.7E-05 34.0 12.0 52 304-356 22-76 (142)
254 COG3629 DnrI DNA-binding trans 93.6 0.91 2E-05 41.4 10.5 78 258-336 154-236 (280)
255 COG1729 Uncharacterized protei 93.6 2.6 5.5E-05 38.0 13.0 59 297-355 183-243 (262)
256 KOG4555 TPR repeat-containing 93.5 3 6.5E-05 32.8 11.8 89 267-357 53-145 (175)
257 COG3118 Thioredoxin domain-con 93.4 6 0.00013 36.1 16.4 144 197-344 143-289 (304)
258 COG4649 Uncharacterized protei 93.3 4.2 9E-05 33.9 14.2 54 233-286 142-196 (221)
259 PF07035 Mic1: Colon cancer-as 93.3 4.3 9.4E-05 33.9 14.6 135 347-495 14-149 (167)
260 KOG2610 Uncharacterized conser 93.0 2.4 5.2E-05 39.2 12.0 153 235-388 115-273 (491)
261 PF13428 TPR_14: Tetratricopep 92.9 0.45 9.8E-06 29.5 5.4 29 190-218 3-31 (44)
262 KOG2114 Vacuolar assembly/sort 92.7 3.7 8E-05 42.8 14.1 176 226-422 337-516 (933)
263 PF13428 TPR_14: Tetratricopep 92.6 0.27 5.9E-06 30.5 4.2 39 157-195 2-42 (44)
264 PRK11906 transcriptional regul 92.6 11 0.00024 36.9 16.7 114 171-285 273-400 (458)
265 KOG4555 TPR repeat-containing 92.6 4.1 8.9E-05 32.1 11.1 90 233-322 53-145 (175)
266 COG4785 NlpI Lipoprotein NlpI, 92.4 6.7 0.00015 34.0 13.2 83 134-218 79-163 (297)
267 COG1729 Uncharacterized protei 92.4 1.5 3.4E-05 39.3 10.0 95 190-286 144-244 (262)
268 cd00923 Cyt_c_Oxidase_Va Cytoc 92.1 0.94 2E-05 33.3 6.7 63 203-265 22-84 (103)
269 COG4105 ComL DNA uptake lipopr 92.1 8.6 0.00019 34.4 22.0 175 302-495 44-233 (254)
270 KOG1258 mRNA processing protei 91.9 15 0.00034 36.9 31.0 81 134-216 93-179 (577)
271 COG0457 NrfG FOG: TPR repeat [ 91.7 8.6 0.00019 33.7 28.9 204 188-392 59-266 (291)
272 KOG1941 Acetylcholine receptor 91.6 12 0.00026 35.2 15.1 125 263-388 128-272 (518)
273 COG0457 NrfG FOG: TPR repeat [ 91.4 9.2 0.0002 33.5 30.0 202 257-495 59-265 (291)
274 PF13929 mRNA_stabil: mRNA sta 91.3 5.6 0.00012 36.3 12.2 119 395-513 160-290 (292)
275 PF13176 TPR_7: Tetratricopept 91.3 0.56 1.2E-05 27.6 4.2 26 468-493 1-26 (36)
276 COG4649 Uncharacterized protei 91.2 8 0.00017 32.3 14.3 136 256-392 58-197 (221)
277 PF10602 RPN7: 26S proteasome 91.1 3.4 7.4E-05 35.2 10.5 62 259-320 38-101 (177)
278 KOG0276 Vesicle coat complex C 91.1 3.8 8.3E-05 41.0 11.8 150 168-353 598-747 (794)
279 PF02284 COX5A: Cytochrome c o 90.8 0.85 1.8E-05 34.0 5.5 60 206-265 28-87 (108)
280 PF13176 TPR_7: Tetratricopept 90.7 0.69 1.5E-05 27.2 4.2 26 190-215 1-26 (36)
281 PF10602 RPN7: 26S proteasome 90.4 8.9 0.00019 32.7 12.4 59 157-215 37-100 (177)
282 PF02259 FAT: FAT domain; Int 90.4 17 0.00038 34.9 19.5 65 430-494 145-212 (352)
283 KOG1941 Acetylcholine receptor 89.7 18 0.00039 34.1 14.2 126 333-458 128-273 (518)
284 KOG1585 Protein required for f 89.1 16 0.00034 32.5 17.7 206 156-386 31-251 (308)
285 PF13431 TPR_17: Tetratricopep 88.9 0.52 1.1E-05 27.3 2.7 24 153-176 10-33 (34)
286 KOG1585 Protein required for f 88.6 17 0.00037 32.3 17.8 57 432-489 191-250 (308)
287 PF10345 Cohesin_load: Cohesin 88.5 35 0.00077 35.8 30.9 73 442-514 372-460 (608)
288 PF09613 HrpB1_HrpK: Bacterial 88.4 13 0.00028 30.7 13.1 16 269-284 56-71 (160)
289 PRK11906 transcriptional regul 88.3 28 0.0006 34.3 17.6 111 272-386 319-431 (458)
290 COG3947 Response regulator con 88.1 21 0.00045 32.6 15.6 58 295-353 282-339 (361)
291 PF00515 TPR_1: Tetratricopept 87.6 1.6 3.4E-05 25.0 4.2 27 468-494 3-29 (34)
292 PRK09687 putative lyase; Provi 87.0 25 0.00055 32.5 26.3 231 155-408 36-276 (280)
293 KOG1464 COP9 signalosome, subu 86.4 25 0.00053 31.7 16.3 179 134-313 41-252 (440)
294 PF02259 FAT: FAT domain; Int 86.2 33 0.00071 32.9 21.4 66 290-355 144-212 (352)
295 KOG4570 Uncharacterized conser 86.2 14 0.00031 34.0 11.1 50 272-321 115-164 (418)
296 PF07719 TPR_2: Tetratricopept 85.6 2.2 4.9E-05 24.2 4.2 27 468-494 3-29 (34)
297 PRK15180 Vi polysaccharide bio 85.6 14 0.0003 36.1 11.3 110 107-218 310-421 (831)
298 TIGR02561 HrpB1_HrpK type III 85.5 18 0.00039 29.4 10.8 62 157-218 8-74 (153)
299 PF11207 DUF2989: Protein of u 85.3 7.6 0.00016 33.4 8.6 42 305-346 153-197 (203)
300 PRK09687 putative lyase; Provi 85.3 31 0.00068 31.9 27.3 201 154-372 66-277 (280)
301 PF13374 TPR_10: Tetratricopep 85.2 2.6 5.6E-05 25.4 4.6 28 467-494 3-30 (42)
302 PF04097 Nic96: Nup93/Nic96; 85.0 54 0.0012 34.4 18.8 58 161-218 116-182 (613)
303 KOG1586 Protein required for f 85.0 27 0.00058 30.9 12.3 21 372-392 164-184 (288)
304 COG1747 Uncharacterized N-term 84.8 44 0.00096 33.2 20.4 164 153-321 63-234 (711)
305 PF07035 Mic1: Colon cancer-as 84.4 23 0.0005 29.7 15.1 135 208-355 14-148 (167)
306 KOG4570 Uncharacterized conser 83.9 8.2 0.00018 35.5 8.6 103 252-356 59-164 (418)
307 KOG4077 Cytochrome c oxidase, 83.3 6.6 0.00014 30.7 6.7 59 206-264 67-125 (149)
308 PF11207 DUF2989: Protein of u 83.2 13 0.00028 32.1 9.1 80 302-383 117-199 (203)
309 cd00923 Cyt_c_Oxidase_Va Cytoc 83.0 12 0.00027 27.7 7.6 42 313-354 28-69 (103)
310 PF13431 TPR_17: Tetratricopep 82.8 2 4.2E-05 24.9 3.0 21 256-276 12-32 (34)
311 PF13374 TPR_10: Tetratricopep 82.8 3.7 8E-05 24.6 4.6 27 189-215 3-29 (42)
312 PF00515 TPR_1: Tetratricopept 82.7 4.3 9.3E-05 23.1 4.6 28 364-391 3-30 (34)
313 COG2909 MalT ATP-dependent tra 82.3 75 0.0016 34.0 25.3 223 269-491 427-684 (894)
314 KOG1920 IkappaB kinase complex 81.9 91 0.002 34.7 22.6 109 140-250 694-819 (1265)
315 COG4785 NlpI Lipoprotein NlpI, 81.4 36 0.00079 29.7 17.3 162 327-497 99-268 (297)
316 KOG1258 mRNA processing protei 81.3 66 0.0014 32.7 30.5 369 135-514 60-488 (577)
317 PF04184 ST7: ST7 protein; In 81.3 61 0.0013 32.3 20.5 77 258-334 260-338 (539)
318 KOG4507 Uncharacterized conser 81.0 14 0.00031 37.1 9.6 152 220-373 568-721 (886)
319 PF00637 Clathrin: Region in C 81.0 0.61 1.3E-05 38.2 0.6 83 299-388 14-96 (143)
320 PF02284 COX5A: Cytochrome c o 80.9 22 0.00047 26.8 9.1 45 347-391 30-74 (108)
321 COG4455 ImpE Protein of avirul 80.2 13 0.00028 32.4 8.0 74 191-265 4-80 (273)
322 PF04184 ST7: ST7 protein; In 80.0 67 0.0015 32.0 19.4 79 292-370 259-339 (539)
323 PF00637 Clathrin: Region in C 80.0 0.57 1.2E-05 38.3 0.1 83 263-352 13-95 (143)
324 TIGR02561 HrpB1_HrpK type III 79.9 31 0.00068 28.1 11.7 49 236-286 23-73 (153)
325 COG4455 ImpE Protein of avirul 79.6 16 0.00034 31.9 8.4 77 294-371 3-81 (273)
326 PF07719 TPR_2: Tetratricopept 79.4 4.8 0.0001 22.8 4.0 29 432-460 2-30 (34)
327 KOG1550 Extracellular protein 79.2 83 0.0018 32.6 25.5 184 204-392 228-427 (552)
328 KOG2396 HAT (Half-A-TPR) repea 79.2 71 0.0015 31.8 35.8 95 428-526 456-555 (568)
329 PF09613 HrpB1_HrpK: Bacterial 79.2 35 0.00077 28.3 14.2 52 268-321 21-73 (160)
330 KOG0890 Protein kinase of the 79.1 1.6E+02 0.0034 35.7 24.6 316 162-496 1389-1732(2382)
331 KOG0276 Vesicle coat complex C 77.9 27 0.00059 35.4 10.5 133 157-318 615-747 (794)
332 PF13762 MNE1: Mitochondrial s 77.3 38 0.00082 27.6 10.5 85 152-236 33-128 (145)
333 KOG0687 26S proteasome regulat 77.1 64 0.0014 30.2 11.8 145 384-529 56-209 (393)
334 PF10579 Rapsyn_N: Rapsyn N-te 76.7 8.9 0.00019 27.2 5.1 51 438-489 14-66 (80)
335 KOG2066 Vacuolar assembly/sort 76.4 1.1E+02 0.0023 32.4 26.0 100 163-269 363-467 (846)
336 PF13181 TPR_8: Tetratricopept 75.7 9.3 0.0002 21.6 4.5 27 468-494 3-29 (34)
337 COG1747 Uncharacterized N-term 75.3 94 0.002 31.1 24.2 37 425-461 199-235 (711)
338 KOG4234 TPR repeat-containing 75.2 51 0.0011 28.5 10.0 90 301-392 104-198 (271)
339 PF07721 TPR_4: Tetratricopept 75.2 5.4 0.00012 21.3 3.1 20 161-180 6-25 (26)
340 PRK15180 Vi polysaccharide bio 75.0 91 0.002 30.9 14.8 121 268-392 300-421 (831)
341 PF13181 TPR_8: Tetratricopept 74.6 10 0.00022 21.4 4.5 27 190-216 3-29 (34)
342 COG3947 Response regulator con 74.5 21 0.00045 32.7 8.0 51 164-214 287-339 (361)
343 PF07163 Pex26: Pex26 protein; 73.9 47 0.001 30.3 10.1 89 262-350 88-181 (309)
344 COG5159 RPN6 26S proteasome re 73.6 74 0.0016 29.2 16.4 198 195-392 10-236 (421)
345 PF11838 ERAP1_C: ERAP1-like C 73.4 59 0.0013 30.8 12.0 130 136-267 146-285 (324)
346 PF13174 TPR_6: Tetratricopept 72.9 8 0.00017 21.5 3.7 25 368-392 6-30 (33)
347 TIGR03504 FimV_Cterm FimV C-te 72.1 8.1 0.00017 24.0 3.6 23 437-459 5-27 (44)
348 PRK14956 DNA polymerase III su 72.0 1E+02 0.0022 31.0 13.1 91 113-223 193-283 (484)
349 TIGR03504 FimV_Cterm FimV C-te 71.9 12 0.00025 23.3 4.3 25 472-496 5-29 (44)
350 PF13929 mRNA_stabil: mRNA sta 71.4 85 0.0018 28.9 17.9 61 289-349 199-260 (292)
351 PF14853 Fis1_TPR_C: Fis1 C-te 70.4 21 0.00045 23.2 5.4 37 472-510 7-43 (53)
352 PF07163 Pex26: Pex26 protein; 70.4 69 0.0015 29.3 10.3 86 228-315 88-181 (309)
353 PF09477 Type_III_YscG: Bacter 69.3 48 0.001 25.3 10.1 86 134-226 20-106 (116)
354 PF13762 MNE1: Mitochondrial s 68.5 64 0.0014 26.3 10.4 95 421-515 27-129 (145)
355 PHA02875 ankyrin repeat protei 68.5 1.3E+02 0.0028 29.8 14.4 76 198-280 9-88 (413)
356 PHA02875 ankyrin repeat protei 67.9 67 0.0015 31.7 11.4 21 161-181 37-57 (413)
357 KOG4648 Uncharacterized conser 67.5 29 0.00063 32.5 7.6 48 165-212 106-155 (536)
358 PF08424 NRDE-2: NRDE-2, neces 67.1 1.2E+02 0.0025 28.9 17.1 115 243-358 51-185 (321)
359 KOG2908 26S proteasome regulat 67.0 1.2E+02 0.0025 28.7 11.5 83 438-520 82-176 (380)
360 PF14689 SPOB_a: Sensor_kinase 66.8 14 0.00031 25.0 4.3 46 447-494 6-51 (62)
361 KOG4648 Uncharacterized conser 66.1 44 0.00096 31.3 8.4 50 265-315 105-154 (536)
362 COG2976 Uncharacterized protei 65.9 88 0.0019 27.0 13.5 89 437-530 95-188 (207)
363 PF11848 DUF3368: Domain of un 65.6 26 0.00056 22.2 5.1 32 477-508 13-44 (48)
364 PF10366 Vps39_1: Vacuolar sor 65.4 58 0.0013 25.0 7.9 26 469-494 42-67 (108)
365 KOG2297 Predicted translation 65.1 1.2E+02 0.0026 28.2 16.8 171 154-347 163-341 (412)
366 PF11846 DUF3366: Domain of un 65.1 17 0.00037 31.5 5.7 51 133-183 121-171 (193)
367 TIGR02508 type_III_yscG type I 64.1 60 0.0013 24.4 10.6 87 135-227 20-106 (115)
368 KOG4077 Cytochrome c oxidase, 64.0 43 0.00094 26.3 6.8 39 421-459 74-112 (149)
369 PF09477 Type_III_YscG: Bacter 63.0 66 0.0014 24.6 9.6 87 202-295 20-106 (116)
370 COG2976 Uncharacterized protei 62.8 1E+02 0.0022 26.6 15.1 134 327-496 54-189 (207)
371 PF10579 Rapsyn_N: Rapsyn N-te 62.5 30 0.00064 24.7 5.2 47 339-385 18-66 (80)
372 TIGR02508 type_III_yscG type I 62.5 65 0.0014 24.3 9.3 59 231-295 47-105 (115)
373 PF11846 DUF3366: Domain of un 62.1 45 0.00099 28.8 7.8 52 443-494 120-172 (193)
374 PF07575 Nucleopor_Nup85: Nup8 62.1 2E+02 0.0044 29.9 17.3 36 478-513 507-542 (566)
375 PF11848 DUF3368: Domain of un 61.4 33 0.00072 21.7 5.0 36 439-474 10-45 (48)
376 PRK14958 DNA polymerase III su 61.2 1.5E+02 0.0032 30.4 12.2 36 186-222 244-279 (509)
377 PF06552 TOM20_plant: Plant sp 61.2 54 0.0012 27.8 7.5 13 359-371 110-122 (186)
378 KOG2582 COP9 signalosome, subu 61.1 1.6E+02 0.0034 28.2 19.3 215 295-531 105-346 (422)
379 KOG0292 Vesicle coat complex C 60.9 2.5E+02 0.0054 30.5 19.9 94 442-535 1002-1118(1202)
380 KOG2066 Vacuolar assembly/sort 60.5 2.4E+02 0.0051 30.1 24.7 95 134-235 370-467 (846)
381 cd00280 TRFH Telomeric Repeat 59.8 63 0.0014 27.5 7.5 22 264-285 118-139 (200)
382 cd00280 TRFH Telomeric Repeat 59.5 63 0.0014 27.5 7.5 20 440-459 120-139 (200)
383 PF11663 Toxin_YhaV: Toxin wit 59.3 15 0.00034 29.1 3.8 32 406-439 105-136 (140)
384 PRK07003 DNA polymerase III su 58.6 2.7E+02 0.0058 30.1 13.9 92 110-222 188-279 (830)
385 PF14689 SPOB_a: Sensor_kinase 57.4 33 0.00071 23.2 4.7 21 298-318 29-49 (62)
386 KOG1586 Protein required for f 57.3 1.4E+02 0.0031 26.6 18.4 22 303-324 165-186 (288)
387 PF06552 TOM20_plant: Plant sp 57.0 97 0.0021 26.4 8.2 48 184-233 65-123 (186)
388 KOG4234 TPR repeat-containing 56.7 85 0.0019 27.2 7.9 83 166-249 105-194 (271)
389 PF11663 Toxin_YhaV: Toxin wit 56.0 15 0.00033 29.2 3.3 32 443-476 107-138 (140)
390 KOG2908 26S proteasome regulat 55.9 1.6E+02 0.0035 27.8 10.1 52 304-355 87-143 (380)
391 COG2909 MalT ATP-dependent tra 55.4 3.1E+02 0.0066 29.8 34.7 223 302-526 425-684 (894)
392 PRK06645 DNA polymerase III su 55.4 1.5E+02 0.0033 30.3 11.0 34 188-222 258-291 (507)
393 PF09670 Cas_Cas02710: CRISPR- 55.3 2E+02 0.0044 28.1 11.7 14 444-457 254-267 (379)
394 PF09868 DUF2095: Uncharacteri 55.3 46 0.001 25.5 5.5 43 123-168 65-107 (128)
395 PRK08691 DNA polymerase III su 55.2 1.8E+02 0.0039 30.9 11.7 35 187-222 245-279 (709)
396 KOG0686 COP9 signalosome, subu 54.9 2.1E+02 0.0046 27.8 14.2 63 258-320 151-215 (466)
397 KOG4567 GTPase-activating prot 54.4 88 0.0019 29.0 8.1 70 416-490 263-342 (370)
398 PRK08691 DNA polymerase III su 54.3 2.5E+02 0.0053 30.0 12.4 35 468-503 248-282 (709)
399 PRK07003 DNA polymerase III su 54.2 2.4E+02 0.0051 30.5 12.2 35 465-500 245-279 (830)
400 PF02607 B12-binding_2: B12 bi 54.0 28 0.0006 24.7 4.3 42 478-519 13-54 (79)
401 COG5159 RPN6 26S proteasome re 53.3 1.9E+02 0.004 26.7 17.5 121 268-388 14-151 (421)
402 COG5187 RPN7 26S proteasome re 52.7 1.9E+02 0.0042 26.7 11.8 98 430-527 114-218 (412)
403 PF08311 Mad3_BUB1_I: Mad3/BUB 52.5 1.1E+02 0.0024 24.3 7.8 43 449-491 81-124 (126)
404 PF10366 Vps39_1: Vacuolar sor 52.4 95 0.002 23.9 7.2 26 295-320 42-67 (108)
405 KOG0686 COP9 signalosome, subu 51.8 2.4E+02 0.0052 27.5 15.3 60 157-216 151-215 (466)
406 PRK14958 DNA polymerase III su 51.7 2.9E+02 0.0062 28.4 12.9 36 467-503 247-282 (509)
407 smart00028 TPR Tetratricopepti 51.5 29 0.00064 18.2 3.5 27 468-494 3-29 (34)
408 PRK10564 maltose regulon perip 51.5 36 0.00079 31.4 5.4 44 187-230 256-299 (303)
409 KOG1114 Tripeptidyl peptidase 50.8 3.8E+02 0.0082 29.5 13.6 71 447-517 1212-1283(1304)
410 COG5108 RPO41 Mitochondrial DN 50.7 1E+02 0.0023 31.9 8.7 75 193-269 33-115 (1117)
411 PRK10564 maltose regulon perip 50.6 30 0.00064 32.0 4.7 37 433-469 259-295 (303)
412 PRK13342 recombination factor 50.3 2.7E+02 0.0058 27.6 17.4 20 271-290 244-263 (413)
413 PF12862 Apc5: Anaphase-promot 50.1 1E+02 0.0022 22.8 7.1 22 162-183 47-68 (94)
414 KOG0991 Replication factor C, 48.7 2E+02 0.0044 25.7 12.3 38 289-327 236-273 (333)
415 KOG1464 COP9 signalosome, subu 48.3 2.2E+02 0.0047 26.0 23.1 246 259-513 67-349 (440)
416 KOG4507 Uncharacterized conser 48.2 1.1E+02 0.0024 31.2 8.4 100 235-336 619-719 (886)
417 COG2178 Predicted RNA-binding 48.1 1.8E+02 0.0039 25.1 9.6 16 305-320 134-149 (204)
418 PF08311 Mad3_BUB1_I: Mad3/BUB 48.0 1E+02 0.0022 24.5 7.0 43 138-180 81-123 (126)
419 PF04190 DUF410: Protein of un 47.6 2.2E+02 0.0049 26.0 18.3 83 255-356 88-170 (260)
420 PRK14951 DNA polymerase III su 47.4 3.7E+02 0.0079 28.4 12.8 77 424-503 198-287 (618)
421 PF13934 ELYS: Nuclear pore co 47.2 2.1E+02 0.0045 25.5 12.4 22 162-183 114-135 (226)
422 KOG2063 Vacuolar assembly/sort 47.2 4.3E+02 0.0093 29.1 18.2 116 259-374 506-638 (877)
423 PF11768 DUF3312: Protein of u 46.3 2.4E+02 0.0053 28.7 10.5 25 159-183 411-435 (545)
424 PRK14963 DNA polymerase III su 46.3 2.4E+02 0.0051 28.9 10.9 32 189-221 243-274 (504)
425 PF11817 Foie-gras_1: Foie gra 46.2 1.4E+02 0.003 27.1 8.5 54 298-351 184-242 (247)
426 KOG2659 LisH motif-containing 46.0 2.2E+02 0.0047 25.3 9.3 17 267-283 74-90 (228)
427 PRK09857 putative transposase; 45.7 1.8E+02 0.0039 27.2 9.3 66 434-500 209-274 (292)
428 KOG3364 Membrane protein invol 45.4 1.5E+02 0.0033 23.8 7.2 73 429-503 30-106 (149)
429 KOG2659 LisH motif-containing 44.8 2.3E+02 0.0049 25.2 10.0 97 152-248 22-128 (228)
430 PF08424 NRDE-2: NRDE-2, neces 44.6 2.8E+02 0.0062 26.3 17.6 155 204-369 47-226 (321)
431 COG0790 FOG: TPR repeat, SEL1 44.0 2.7E+02 0.0058 25.8 23.4 148 134-287 55-221 (292)
432 PF11838 ERAP1_C: ERAP1-like C 43.9 2.8E+02 0.0061 26.1 20.6 59 294-355 171-229 (324)
433 PF10475 DUF2450: Protein of u 43.7 95 0.0021 29.0 7.2 110 333-452 104-218 (291)
434 KOG0292 Vesicle coat complex C 43.3 1E+02 0.0022 33.1 7.6 131 233-392 653-783 (1202)
435 PF02847 MA3: MA3 domain; Int 43.2 1.4E+02 0.0029 22.9 7.0 81 435-517 6-88 (113)
436 PRK09462 fur ferric uptake reg 43.0 1E+02 0.0022 25.3 6.5 63 109-172 4-68 (148)
437 PF04097 Nic96: Nup93/Nic96; 42.6 4.3E+02 0.0094 27.9 17.6 45 190-236 114-158 (613)
438 COG2812 DnaX DNA polymerase II 42.5 3.9E+02 0.0085 27.3 11.5 97 107-224 185-281 (515)
439 PF03745 DUF309: Domain of unk 41.9 1E+02 0.0022 20.9 5.2 49 441-489 9-62 (62)
440 COG0735 Fur Fe2+/Zn2+ uptake r 41.8 1.3E+02 0.0028 24.6 6.9 63 107-171 6-70 (145)
441 PF14669 Asp_Glu_race_2: Putat 41.5 2.3E+02 0.0051 24.4 14.2 58 330-387 135-206 (233)
442 PF09986 DUF2225: Uncharacteri 40.0 2.6E+02 0.0057 24.6 9.6 20 476-495 175-194 (214)
443 PRK14951 DNA polymerase III su 39.9 4.8E+02 0.01 27.6 13.7 35 187-222 250-284 (618)
444 smart00386 HAT HAT (Half-A-TPR 39.9 46 0.001 18.0 3.0 12 273-284 3-14 (33)
445 COG0735 Fur Fe2+/Zn2+ uptake r 39.5 2.1E+02 0.0046 23.4 7.9 62 314-376 8-69 (145)
446 PF15297 CKAP2_C: Cytoskeleton 39.4 3.5E+02 0.0075 25.9 10.6 65 448-514 120-188 (353)
447 PF10255 Paf67: RNA polymerase 39.1 3.9E+02 0.0085 26.3 11.8 16 117-132 70-85 (404)
448 COG2178 Predicted RNA-binding 38.9 2.6E+02 0.0056 24.2 9.6 19 338-356 132-150 (204)
449 KOG4567 GTPase-activating prot 38.7 2.1E+02 0.0045 26.7 8.0 58 312-374 263-320 (370)
450 cd08819 CARD_MDA5_2 Caspase ac 38.5 1.6E+02 0.0034 21.6 6.7 14 341-354 50-63 (88)
451 KOG0890 Protein kinase of the 38.5 8.6E+02 0.019 30.1 24.9 143 134-281 1397-1542(2382)
452 PF09454 Vps23_core: Vps23 cor 38.3 87 0.0019 21.4 4.4 49 255-304 6-54 (65)
453 KOG1498 26S proteasome regulat 38.1 3.9E+02 0.0084 26.0 16.6 104 296-407 135-256 (439)
454 PF09454 Vps23_core: Vps23 cor 37.7 1.2E+02 0.0026 20.7 5.0 49 186-235 6-54 (65)
455 KOG0991 Replication factor C, 37.7 3E+02 0.0066 24.7 13.4 50 360-413 237-286 (333)
456 PF14853 Fis1_TPR_C: Fis1 C-te 37.7 1.2E+02 0.0025 19.8 5.0 35 436-472 6-40 (53)
457 PHA03100 ankyrin repeat protei 37.6 3.2E+02 0.0069 27.6 10.7 151 161-326 37-203 (480)
458 PF11123 DNA_Packaging_2: DNA 37.4 1.1E+02 0.0024 21.4 4.7 32 135-168 12-43 (82)
459 KOG3807 Predicted membrane pro 37.4 2.7E+02 0.0058 26.3 8.6 112 414-536 234-346 (556)
460 PRK14956 DNA polymerase III su 36.4 4.7E+02 0.01 26.5 12.4 39 465-503 247-285 (484)
461 PRK09857 putative transposase; 36.1 2.6E+02 0.0056 26.2 8.7 22 304-325 252-273 (292)
462 PF11817 Foie-gras_1: Foie gra 36.1 1.9E+02 0.004 26.3 7.7 59 330-388 181-244 (247)
463 PF12793 SgrR_N: Sugar transpo 35.9 2.1E+02 0.0045 22.3 7.3 30 397-426 17-47 (115)
464 PF02847 MA3: MA3 domain; Int 35.4 96 0.0021 23.8 5.1 63 469-532 5-68 (113)
465 PHA02989 ankyrin repeat protei 35.2 3.7E+02 0.008 27.4 10.6 180 236-432 13-214 (494)
466 KOG2168 Cullins [Cell cycle co 34.7 6.3E+02 0.014 27.4 14.5 24 436-459 627-650 (835)
467 KOG2297 Predicted translation 34.6 3.9E+02 0.0085 25.0 15.6 22 106-127 46-67 (412)
468 PRK11639 zinc uptake transcrip 34.6 2.8E+02 0.006 23.4 8.0 36 412-447 41-76 (169)
469 PF12862 Apc5: Anaphase-promot 34.4 1.9E+02 0.0041 21.3 8.0 55 441-495 8-70 (94)
470 PF04090 RNA_pol_I_TF: RNA pol 33.7 2.3E+02 0.005 24.7 7.3 63 431-494 41-104 (199)
471 COG4259 Uncharacterized protei 33.3 2.1E+02 0.0046 21.5 6.5 27 228-254 77-103 (121)
472 PF09868 DUF2095: Uncharacteri 33.2 1.8E+02 0.004 22.4 5.7 30 263-293 67-96 (128)
473 PRK14971 DNA polymerase III su 33.0 6.1E+02 0.013 26.8 12.3 34 188-222 248-281 (614)
474 PF08542 Rep_fac_C: Replicatio 33.0 1.9E+02 0.0041 20.9 7.2 33 469-502 8-40 (89)
475 KOG2034 Vacuolar sorting prote 32.4 7E+02 0.015 27.3 27.6 47 164-215 366-416 (911)
476 PF07678 A2M_comp: A-macroglob 32.3 2.6E+02 0.0057 25.2 8.1 29 291-319 131-159 (246)
477 cd08819 CARD_MDA5_2 Caspase ac 31.7 2.1E+02 0.0045 21.0 7.0 66 276-347 21-86 (88)
478 COG2256 MGS1 ATPase related to 31.2 5.2E+02 0.011 25.4 15.3 63 240-302 229-294 (436)
479 smart00777 Mad3_BUB1_I Mad3/BU 30.9 2.7E+02 0.0059 22.1 8.3 42 449-490 81-123 (125)
480 PRK14700 recombination factor 30.8 4.5E+02 0.0098 24.6 12.7 39 269-307 138-176 (300)
481 KOG2582 COP9 signalosome, subu 30.8 5E+02 0.011 25.1 16.9 127 154-285 73-211 (422)
482 PRK11639 zinc uptake transcrip 30.6 2.8E+02 0.006 23.4 7.3 66 418-484 13-78 (169)
483 COG4003 Uncharacterized protei 30.6 1.9E+02 0.0041 20.7 5.0 44 124-170 36-79 (98)
484 PRK14961 DNA polymerase III su 30.0 5.2E+02 0.011 25.0 12.1 31 190-221 248-278 (363)
485 KOG0403 Neoplastic transformat 29.9 5.7E+02 0.012 25.5 20.9 64 434-498 512-575 (645)
486 PF14561 TPR_20: Tetratricopep 29.8 2.3E+02 0.005 20.8 9.7 55 465-519 21-76 (90)
487 PLN03025 replication factor C 29.4 4.9E+02 0.011 24.6 13.4 41 465-506 224-264 (319)
488 PRK13184 pknD serine/threonine 29.3 8.5E+02 0.018 27.3 30.6 314 193-516 480-854 (932)
489 PF10345 Cohesin_load: Cohesin 28.9 7.1E+02 0.015 26.3 33.9 17 375-391 374-390 (608)
490 PF11768 DUF3312: Protein of u 28.6 6.6E+02 0.014 25.8 10.4 58 191-248 411-469 (545)
491 KOG4279 Serine/threonine prote 28.4 7.7E+02 0.017 26.5 14.3 170 294-495 203-395 (1226)
492 PRK10941 hypothetical protein; 28.3 4.8E+02 0.01 24.1 10.9 58 228-285 186-243 (269)
493 PRK14960 DNA polymerase III su 28.2 7.6E+02 0.016 26.4 13.2 33 189-222 246-278 (702)
494 PF04090 RNA_pol_I_TF: RNA pol 27.9 3.8E+02 0.0083 23.3 7.7 53 258-311 42-95 (199)
495 PRK09462 fur ferric uptake reg 27.8 3.4E+02 0.0073 22.2 8.4 35 446-480 32-66 (148)
496 PF12926 MOZART2: Mitotic-spin 27.6 2.5E+02 0.0054 20.6 7.8 62 325-388 8-69 (88)
497 PRK14963 DNA polymerase III su 27.4 6.9E+02 0.015 25.6 12.6 33 469-502 245-277 (504)
498 PRK07764 DNA polymerase III su 27.4 5.5E+02 0.012 28.3 10.5 92 415-510 185-291 (824)
499 COG0790 FOG: TPR repeat, SEL1 27.3 5E+02 0.011 23.9 22.5 25 481-505 252-276 (292)
500 COG4003 Uncharacterized protei 27.3 2.4E+02 0.0052 20.3 5.3 44 262-306 36-79 (98)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.3e-62 Score=513.01 Aligned_cols=411 Identities=16% Similarity=0.233 Sum_probs=391.6
Q ss_pred HHHHHHHHhc--cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048749 123 DLIVNVINRY--RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAA 200 (536)
Q Consensus 123 ~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~ 200 (536)
..++.++..+ .|+++.|+++|++|.+.+-..++...++.++..|.+.|.+++|..+|+.|.. ||..+|+.++.+|++
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCAS 449 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 3444444433 3699999999999999875678888999999999999999999999999986 999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 201 AHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESE-KNEFGYDIKTMNIILNGWCVLGNVYEAKRF 279 (536)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 279 (536)
.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++| ..++.||..+|+.||.+|++.|++++|.++
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997 567899999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH--cCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 280 WKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE--KGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 280 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|
T Consensus 530 f~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999987 6899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCC---ChHHHHHHHHHHCCCCCCHHHH
Q 048749 358 CLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKP---EEVPWVLERMERNGCKMSTDTY 434 (536)
Q Consensus 358 ~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~---~~a~~~~~~~~~~~~~~~~~~~ 434 (536)
+.|+..+|+.+|.+|++.|++++|.++|++|.+.| +.||..+|+.++.+|++. ++|.++++.|.+.|+.||..+|
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G--v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG--VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999 999999999999999654 5678999999999999999999
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhh
Q 048749 435 NVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKL 514 (536)
Q Consensus 435 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~ 514 (536)
+.||.+|+++|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||..++.+|.+.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHhhhccCCCCC
Q 048749 515 KERGEQGKKVIKLTSLGLKGNA 536 (536)
Q Consensus 515 ~~~~~a~~~~~~~~~~g~~p~a 536 (536)
|+.++|.+.+.+|.+.|+.||.
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999983
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.6e-62 Score=511.17 Aligned_cols=451 Identities=19% Similarity=0.215 Sum_probs=362.0
Q ss_pred cCC-CCccccccCCChH----HHHHHHHHHhhCCC-CChhHHHHHHhhcCCCCCHHHHHHHHHhc--cCCHHHHHHHHHH
Q 048749 74 ANS-DEKSEFQRYPGDE----IAINVQNILKTCSV-STKGEIEKALNQCELTLTDDLIVNVINRY--RFDWEAAYTFFKW 145 (536)
Q Consensus 74 ~~~-~~~~~f~~~~~~~----~~~~~~~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~ 145 (536)
+.. ++..+|++|+.+. .......++..+.. ....++...++.+.. ++..++..++..+ .++++.|+++|+.
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~~lf~~ 462 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGALRVLRL 462 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 444 5677787776541 11111222222222 223455555555544 5655555555443 3688899999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048749 146 VSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP---DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD 222 (536)
Q Consensus 146 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 222 (536)
|.+.+ +.||..+|+.+|.+|++.|++++|.++|++|. ..||..+|+.+|.+|++.|++++|+++|++|.+.|+.||
T Consensus 463 M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD 541 (1060)
T PLN03218 463 VQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541 (1060)
T ss_pred HHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 88876 88899999999999999999999999999888 457888999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048749 223 LSAFQNLLLWLCRYKHVEVAETFFESEK---NEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFV 299 (536)
Q Consensus 223 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 299 (536)
..+|+.+|.+|++.|++++|.++|++|. .++.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI 621 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 9999999999999999999999998874 4578888999999999999999999999999999888888999999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 300 NALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRME 379 (536)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 379 (536)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|+++
T Consensus 622 ~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999989999999999999999999999999999999998888999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCC---CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 048749 380 TVYEYLDEMEQKNGSCLPNEITFNYLLKSLKK---PEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEE 456 (536)
Q Consensus 380 ~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (536)
+|.++|++|.+.+ ..||..+|+.++.+|++ .++|.+++++|.+.|+.||..+|+.++.+|++.|++++|.+++++
T Consensus 702 eA~~lf~eM~~~g--~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 702 KALELYEDIKSIK--LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999998887 88999999999988854 456778888888888899999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh
Q 048749 457 MEKKGMGPDQRSYTVMIHGLYD----K-------------------GRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIK 513 (536)
Q Consensus 457 m~~~g~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~ 513 (536)
|.+.|+.||..+|+.|+..|.+ . +..++|+.+|++|++.|+.||..||..++.++.+
T Consensus 780 M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~ 859 (1060)
T PLN03218 780 AKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQL 859 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Confidence 9988999999999888865432 1 2246788889999999999998888888766655
Q ss_pred hhhhhhhhHHHHHhh
Q 048749 514 LKERGEQGKKVIKLT 528 (536)
Q Consensus 514 ~~~~~~a~~~~~~~~ 528 (536)
.+....+.+.+.+|.
T Consensus 860 ~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 860 PHDATLRNRLIENLG 874 (1060)
T ss_pred cccHHHHHHHHHHhc
Confidence 554444444444443
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.1e-63 Score=528.59 Aligned_cols=501 Identities=16% Similarity=0.172 Sum_probs=365.3
Q ss_pred cccchhhhhccccccCCCCCcccccccccccccC--ccccccchhhhhhhhhhhcCC-CCccccccCCChHHHHHHHHHH
Q 048749 22 FHSQLTTQFSKLQSCNSVTSHKTLIPIINLQARN--SEFLFLGRIETAQLVHSLANS-DEKSEFQRYPGDEIAINVQNIL 98 (536)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~l 98 (536)
.+++..++..+++.|...+....|..+|+...+. ..+.++.+. ++++|.+++.. .+..+|++++.+ ++.+|+.++
T Consensus 82 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~-li~~~~~~g~~~~A~~~f~~m~~~-d~~~~n~li 159 (857)
T PLN03077 82 VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA-MLSMFVRFGELVHAWYVFGKMPER-DLFSWNVLV 159 (857)
T ss_pred CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH-HHHHHHhCCChHHHHHHHhcCCCC-CeeEHHHHH
Confidence 4556667888889998888888888888876554 333445555 89999999988 788999999987 688999999
Q ss_pred hhCCCCCh-hHHHHHH---hhcCCCCCHHHHHHHHHhcc--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCH
Q 048749 99 KTCSVSTK-GEIEKAL---NQCELTLTDDLIVNVINRYR--FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRF 172 (536)
Q Consensus 99 ~~~~~~~~-~~~~~~l---~~~~~~~~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 172 (536)
..+...+. +++...+ ...|..|+..++..++..+. +++..+.+++..+.+.+ +.||..+||.+|.+|+++|++
T Consensus 160 ~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 160 GGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC-CCcccchHhHHHHHHhcCCCH
Confidence 98876532 4444444 34589999999888888764 57889999999999976 999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cC
Q 048749 173 VELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESE-KN 251 (536)
Q Consensus 173 ~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~ 251 (536)
++|.++|++|. .+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..+ +.
T Consensus 239 ~~A~~lf~~m~-~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 317 (857)
T PLN03077 239 VSARLVFDRMP-RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317 (857)
T ss_pred HHHHHHHhcCC-CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 99999999998 47889999999999999999999999999999999999999999999888888888888888885 56
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHH
Q 048749 252 EFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCN 331 (536)
Q Consensus 252 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 331 (536)
++.||..+||.||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 318 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~ 393 (857)
T PLN03077 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393 (857)
T ss_pred CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHH
Confidence 778888888888888888888888888888775 5677778888888888888888888888887777777777777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------------
Q 048749 332 CIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNG------------------ 393 (536)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~------------------ 393 (536)
.++.+|++.|++++|.++++.|.+.|+.|+..+|++||.+|++.|++++|.++|++|.+.+.
T Consensus 394 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~e 473 (857)
T PLN03077 394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473 (857)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHH
Confidence 77777777777777777777777777777777777777777777766666666666543210
Q ss_pred ----------CCCCcHHHHHHHHHhcCCC---ChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 048749 394 ----------SCLPNEITFNYLLKSLKKP---EEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK 460 (536)
Q Consensus 394 ----------~~~p~~~~~~~ll~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 460 (536)
...||..||+.+|.+|++. +.+.+++..+.+.|+.+|..++++||++|+++|++++|.++|+++
T Consensus 474 A~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--- 550 (857)
T PLN03077 474 ALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--- 550 (857)
T ss_pred HHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---
Confidence 1578888888888877554 345566666666666554444444444444444444444444443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHhh-hccCCCC
Q 048749 461 GMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIKLT-SLGLKGN 535 (536)
Q Consensus 461 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~~-~~g~~p~ 535 (536)
.||..+|++||.+|+++|+.++|+++|++|.+.|+.||..||..++.+|.+.|..+++.+.+.+|. +.|+.|+
T Consensus 551 --~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 551 --EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 234444444444444444444444444444444444444444444444444444444444444444 3444443
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-60 Score=510.87 Aligned_cols=499 Identities=14% Similarity=0.135 Sum_probs=365.6
Q ss_pred ccccchhhhhccccccCCCCCcccccccccccccC--ccccccchhhhhhhhhhhcCC-CCccccccCCChHHHHHHHHH
Q 048749 21 KFHSQLTTQFSKLQSCNSVTSHKTLIPIINLQARN--SEFLFLGRIETAQLVHSLANS-DEKSEFQRYPGDEIAINVQNI 97 (536)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~ 97 (536)
...++..|+..+++.|+.......|.++|+...+. ..+.+..+. ++.+|.+++.. .+..+|++++.+ +..+|+.+
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~-Li~~y~k~g~~~~A~~lf~~m~~~-d~~s~n~l 259 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA-LITMYVKCGDVVSARLVFDRMPRR-DCISWNAM 259 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH-HHHHHhcCCCHHHHHHHHhcCCCC-CcchhHHH
Confidence 56677889999999999999999999999987765 445566666 99999999998 788999999987 67899999
Q ss_pred HhhCCCCCh-hHHHHHH---hhcCCCCCHHHHHHHHHhc--cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC
Q 048749 98 LKTCSVSTK-GEIEKAL---NQCELTLTDDLIVNVINRY--RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARR 171 (536)
Q Consensus 98 l~~~~~~~~-~~~~~~l---~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 171 (536)
+..+...+. .++...+ ...|..|+..++..++..+ .++.+.|.++|..+.+.+ +.||..+||.+|.+|+++|+
T Consensus 260 i~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~ 338 (857)
T PLN03077 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGS 338 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhcCC
Confidence 998876532 3333333 4468888888888887765 369999999999999986 99999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-c
Q 048749 172 FVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESE-K 250 (536)
Q Consensus 172 ~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~ 250 (536)
+++|.++|++|. .+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+ +
T Consensus 339 ~~~A~~vf~~m~-~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 339 WGEAEKVFSRME-TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred HHHHHHHHhhCC-CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 999999999998 47889999999999999999999999999999999999999999999999999999999999885 6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhH
Q 048749 251 NEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTC 330 (536)
Q Consensus 251 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 330 (536)
.++.|+..+||.||.+|++.|++++|.++|++|. .+|..+|+++|.+|++.|+.++|+++|++|.. ++.||..||
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~ 492 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTL 492 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHH
Confidence 6788899999999999999999999999888886 46777888888888888888888888888765 477777777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------------------------------HHHHHHHHHHHhcCCHHH
Q 048749 331 NCIIDALCFKKRIPEALEVLREMKNRGCLPNV------------------------------TTYNSLIKHLCKIKRMET 380 (536)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------------------------------~~~~~li~~~~~~~~~~~ 380 (536)
+.++.+|++.|+++.+.+++..+.+.|+.+|. .+||+||.+|++.|+.++
T Consensus 493 ~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSM 572 (857)
T ss_pred HHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHH
Confidence 77776666666666666666666655555554 455555555555555555
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCC---ChHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 048749 381 VYEYLDEMEQKNGSCLPNEITFNYLLKSLKKP---EEVPWVLERME-RNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEE 456 (536)
Q Consensus 381 A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~---~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (536)
|.++|++|.+.| +.||..||+.+|.+|++. +++.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++
T Consensus 573 A~~lf~~M~~~g--~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 573 AVELFNRMVESG--VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHcC--CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 555555555544 455555555555554332 33344455554 345555555555555555555555555555554
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHhhhhhhhhhHHHHHhhhccCCCC
Q 048749 457 MEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEP-RTGILVNDMNIKLKERGEQGKKVIKLTSLGLKGN 535 (536)
Q Consensus 457 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 535 (536)
|. ++||..+|++|+.+|..+|+.+.+....+++.+ +.|+. .+|.++...+...|+++++.+....|.+.|++++
T Consensus 651 m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~ 725 (857)
T PLN03077 651 MP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725 (857)
T ss_pred CC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCC
Confidence 42 345555555555555555555555444444443 33432 2355555566666777777777777777777664
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.7e-58 Score=479.50 Aligned_cols=429 Identities=17% Similarity=0.227 Sum_probs=372.6
Q ss_pred HHHHHHHHHhhCCCCC-hhHHHHHHh---h-cCCCCCHHHHHHHHHhc--cCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 048749 90 IAINVQNILKTCSVST-KGEIEKALN---Q-CELTLTDDLIVNVINRY--RFDWEAAYTFFKWVSREGDYSPGSNVFNAI 162 (536)
Q Consensus 90 ~~~~~~~~l~~~~~~~-~~~~~~~l~---~-~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 162 (536)
...+|+.++..+...+ ..++...++ . .+..++..++..++..+ .++++.|.++|..+.+.+ +.||..+||.+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 3456777776655432 233333333 2 24667777777777664 368999999999999876 99999999999
Q ss_pred HHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-----------------
Q 048749 163 LDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSA----------------- 225 (536)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~----------------- 225 (536)
+.+|++.|++++|.++|++|.. +|..+||++|.+|++.|++++|+++|++|.+.|+.||..+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~-~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE-RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC-CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 9999999999999999999984 8999999999999999999999999999988777666554
Q ss_pred ------------------HHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 226 ------------------FQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK 287 (536)
Q Consensus 226 ------------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 287 (536)
|+.|+.+|++.|++++|.++|+.|. ++|..+||.||.+|++.|++++|.++|++|.+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 4667788889999999999999886 4589999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048749 288 CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNS 367 (536)
Q Consensus 288 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 367 (536)
+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|.+ ||..+||+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999864 68899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCC---ChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHc
Q 048749 368 LIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKP---EEVPWVLERMER-NGCKMSTDTYNVILKLYVN 443 (536)
Q Consensus 368 li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~---~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~ 443 (536)
||.+|++.|+.++|.++|++|.+.| +.||..||+.++.+|++. +++.++|+.|.+ .|+.|+..+|+.++++|++
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g--~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEG--VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 9999999999999999999999988 899999999999999655 566788889976 6999999999999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhhhhhhhhhH
Q 048749 444 WDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPE-PRTGILVNDMNIKLKERGEQGK 522 (536)
Q Consensus 444 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~~~~~~a~~ 522 (536)
.|++++|.+++++| ++.|+..+|++|+.+|..+|+++.|..+++++.+ +.|+ ..+|..++.++.+.|+.++|.+
T Consensus 475 ~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 475 EGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred cCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 99999999988765 5789999999999999999999999999998864 5665 5679999999999999999999
Q ss_pred HHHHhhhccCCC
Q 048749 523 KVIKLTSLGLKG 534 (536)
Q Consensus 523 ~~~~~~~~g~~p 534 (536)
.+.+|.+.|++.
T Consensus 550 v~~~m~~~g~~k 561 (697)
T PLN03081 550 VVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHcCCcc
Confidence 999999999864
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-56 Score=468.40 Aligned_cols=396 Identities=17% Similarity=0.213 Sum_probs=350.7
Q ss_pred HHHHHHHHhhCCCCCh----hHHHHHHhhcCCCCCHHHHHHHHHhc--cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 048749 91 AINVQNILKTCSVSTK----GEIEKALNQCELTLTDDLIVNVINRY--RFDWEAAYTFFKWVSREGDYSPGSNVFNAILD 164 (536)
Q Consensus 91 ~~~~~~~l~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 164 (536)
...+..++..+...+. ..+...+...|..++..+...++..+ .|+++.|.++|+.|. .||..+||.+|.
T Consensus 123 ~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~ 197 (697)
T PLN03081 123 ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIG 197 (697)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHH
Confidence 4455556655443321 44455556678888877666665543 369999999999984 368899999999
Q ss_pred HHHccCCHHHHHHHHHhCC---C-----------------------------------CCCHHHHHHHHHHHHhcCCHHH
Q 048749 165 VLGRARRFVELIQVFDEMP---D-----------------------------------LVNEKTYGILLNRYAAAHMVEE 206 (536)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~---~-----------------------------------~~~~~~~~~li~~~~~~g~~~~ 206 (536)
+|++.|++++|.++|++|. . .+|..+|++||.+|++.|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 9999999999999999985 1 2455677889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 207 AIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESE-KNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIK 285 (536)
Q Consensus 207 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 285 (536)
|.++|++|. .+|..+|+.++.+|++.|+.++|.++|++| ..++.||..+|+.++.+|++.|++++|.+++..|.+
T Consensus 278 A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 278 ARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 999999996 479999999999999999999999999998 568999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048749 286 SKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTY 365 (536)
Q Consensus 286 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 365 (536)
.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999964 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048749 366 NSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWD 445 (536)
Q Consensus 366 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 445 (536)
+++|.+|++.|.+++|.++|+.|.+..+ +.|+..+|+.++..+++.+...+.++.+.+.++.|+..+|++|+.+|...|
T Consensus 430 ~~ll~a~~~~g~~~~a~~~f~~m~~~~g-~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 430 LAVLSACRYSGLSEQGWEIFQSMSENHR-IKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHK 508 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcC-CCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999987532 899999999999999998888887777788889999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH
Q 048749 446 CEDKVRHTWEEMEKKGMGP-DQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPR 502 (536)
Q Consensus 446 ~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 502 (536)
+++.|..+++++.+. .| +..+|..|++.|++.|++++|.+++++|.++|+.+.+.
T Consensus 509 ~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 509 NLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred CcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 999999999999754 45 46799999999999999999999999999999875543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=5.9e-24 Score=232.77 Aligned_cols=380 Identities=12% Similarity=0.060 Sum_probs=200.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFD 212 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 212 (536)
+++.|.+.|+.+.+.. +.+..++..+...+.+.|++++|...|+++. .+.+...+..++..+...|++++|+++++
T Consensus 514 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 514 NPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred CHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4444444444443321 2233444444444444444444444444433 23333344444444444444444444444
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048749 213 RRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDS 292 (536)
Q Consensus 213 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 292 (536)
++.+.. +.+..+|..+..++.+.|++++|...|+.+....+.+...+..+...|.+.|++++|..+|+.+.+.. +.+.
T Consensus 592 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 669 (899)
T TIGR02917 592 EAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNT 669 (899)
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCH
Confidence 444322 33344444444444445555555554444332223344444444444445555555555554444332 2234
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048749 293 VTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHL 372 (536)
Q Consensus 293 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 372 (536)
.++..++..+...|++++|.++++.+.+.+ +.+...+..+...+.+.|++++|.+.|+.+...+ |+..++..+..++
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 746 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHH
Confidence 444445555555555555555555554442 2234444555555555555555555555555442 2334444555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhH
Q 048749 373 CKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDK 449 (536)
Q Consensus 373 ~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 449 (536)
.+.|++++|.+.+.++.+.. +.+...+..+...+ ++.++|.+.++.+.+.. +.+..+++.+...+...|+ .+
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTH---PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HH
Confidence 55566666666555555543 12333333333322 44455666666666543 3456666666666666666 66
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 048749 450 VRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIKLT 528 (536)
Q Consensus 450 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~~ 528 (536)
|+..++++.+.. +-+..++..+...+...|++++|.++++++++.+.. ++.++..+...+.+.|+.++|.+.+.+|.
T Consensus 822 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 822 ALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666666666542 224455666777777888888888888888876543 77777888888888888888888888774
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=2.6e-23 Score=227.72 Aligned_cols=386 Identities=12% Similarity=0.054 Sum_probs=272.1
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 132 YRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIG 209 (536)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (536)
..++++.|.+.|+.+.+.. +.+...+..+...+...|++++|.+.|+++. .+.+..++..+...+.+.|+.++|..
T Consensus 477 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred hCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 3456666666666665542 3445556666666666666666666666665 44556666667777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048749 210 VFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCE 289 (536)
Q Consensus 210 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 289 (536)
+|+++.+.+ +.+...+..+...+.+.|++++|..+++.+....+.+...|..+..+|...|++++|...|+.+.+.. +
T Consensus 555 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 632 (899)
T TIGR02917 555 WLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-P 632 (899)
T ss_pred HHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 777766554 44555666677777777777777777777655556667777777777777777777777777776654 3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048749 290 PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLI 369 (536)
Q Consensus 290 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 369 (536)
.+...+..+..++.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|.++++.+.+.+. .+...+..+.
T Consensus 633 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~ 710 (899)
T TIGR02917 633 DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEG 710 (899)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHH
Confidence 455667777777777777777777777777642 33466777777777778888888888877776543 3566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 048749 370 KHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDC 446 (536)
Q Consensus 370 ~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 446 (536)
..+.+.|++++|.+.|..+.... |+..++..+...+ ++.+++.+.++.+.+.. +.+...+..+...|...|+
T Consensus 711 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~ 785 (899)
T TIGR02917 711 DLYLRQKDYPAAIQAYRKALKRA----PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKD 785 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 78888888888888888887765 3333444343333 55666777777776653 4577888888888888899
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 048749 447 EDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIK 526 (536)
Q Consensus 447 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~ 526 (536)
.++|.+.|+++.+.. +++...++.+...+...|+ ++|+.+++++.+.. .-++.++..+..++...|+.++|.+.+.+
T Consensus 786 ~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 862 (899)
T TIGR02917 786 YDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRK 862 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998888764 4567788888888888888 77888888888742 22345567788888888999999999988
Q ss_pred hhhcc
Q 048749 527 LTSLG 531 (536)
Q Consensus 527 ~~~~g 531 (536)
+.+.+
T Consensus 863 a~~~~ 867 (899)
T TIGR02917 863 AVNIA 867 (899)
T ss_pred HHhhC
Confidence 86654
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.2e-21 Score=192.71 Aligned_cols=301 Identities=15% Similarity=0.106 Sum_probs=227.1
Q ss_pred HHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcC
Q 048749 163 LDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD---LSAFQNLLLWLCRYK 237 (536)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~ 237 (536)
...+...|++++|...|+++. .+.+..++..+...+...|++++|+.+++.+.+.+..++ ..++..+...+.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 334556677777777777776 445556777777777777788888877777776432221 245667777888888
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHhHHHH
Q 048749 238 HVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPD----SVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 238 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~ 313 (536)
+++.|..+|+.+....+.+..+++.++..+.+.|++++|.+.++.+.+.+..++ ...+..+...+.+.|++++|.+
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888886554456777888888888888888888888888877653322 1235566777888899999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048749 314 LFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNG 393 (536)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 393 (536)
.|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++++.+..
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 998888753 234567777888888999999999999988865433234667888889999999999999888887643
Q ss_pred CCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048749 394 SCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMI 473 (536)
Q Consensus 394 ~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 473 (536)
|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++
T Consensus 280 -----------------------------------p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~ 322 (389)
T PRK11788 280 -----------------------------------PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLL 322 (389)
T ss_pred -----------------------------------CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHH
Confidence 23345577888899999999999999988876 68888998888
Q ss_pred HHHHh---cCCHHHHHHHHHHHHHCCCCCcHH
Q 048749 474 HGLYD---KGRLEDALSYFHEMRLKGMVPEPR 502 (536)
Q Consensus 474 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 502 (536)
..+.. .|+.++++.++++|.++++.|++.
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 87765 568899999999999988888876
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2.1e-20 Score=183.88 Aligned_cols=308 Identities=15% Similarity=0.081 Sum_probs=242.4
Q ss_pred hhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCC------
Q 048749 114 NQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVN------ 187 (536)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------ 187 (536)
++....+....+..+.....++++.|+..|+.+.+.+ +.+..++..+...+.+.|++++|..+++.+...++
T Consensus 29 ~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 106 (389)
T PRK11788 29 QKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQR 106 (389)
T ss_pred hhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHH
Confidence 3445566666777777666789999999999999864 45677899999999999999999999999872221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCC-----HHHHHH
Q 048749 188 EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYD-----IKTMNI 262 (536)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~ 262 (536)
...+..+...|.+.|++++|+++|+++.+.. +.+..++..++..+.+.|++++|.+.++.+....+.+ ...+..
T Consensus 107 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 107 LLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 2568889999999999999999999999764 5677899999999999999999999999964432222 224567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 048749 263 ILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKR 342 (536)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 342 (536)
+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|+
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 7888899999999999999998764 345678888999999999999999999999886433234678899999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcC------CCChHH
Q 048749 343 IPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLK------KPEEVP 416 (536)
Q Consensus 343 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~------~~~~a~ 416 (536)
+++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+.. |+..+++.++..+. +.+++.
T Consensus 265 ~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~----P~~~~~~~l~~~~~~~~~~g~~~~a~ 338 (389)
T PRK11788 265 EAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH----PSLRGFHRLLDYHLAEAEEGRAKESL 338 (389)
T ss_pred HHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----cCHHHHHHHHHHhhhccCCccchhHH
Confidence 99999999999876 4566677889999999999999999999988754 55555554443321 233444
Q ss_pred HHHHHHHHCCCCCCH
Q 048749 417 WVLERMERNGCKMST 431 (536)
Q Consensus 417 ~~~~~~~~~~~~~~~ 431 (536)
.+++.|.+.++.|++
T Consensus 339 ~~~~~~~~~~~~~~p 353 (389)
T PRK11788 339 LLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHHHHHHHhCCC
Confidence 445555544444443
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=9.4e-17 Score=177.33 Aligned_cols=390 Identities=10% Similarity=0.020 Sum_probs=252.5
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCC---CHHHHHH------------
Q 048749 130 NRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLV---NEKTYGI------------ 193 (536)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~------------ 193 (536)
....++++.|+..|+.+.+.. +.+..++..+..+|.+.|++++|+..|++.. ..| ....|..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 334579999999999998864 5578899999999999999999999999876 222 2222322
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 194 LLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNV 273 (536)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 273 (536)
....+.+.|++++|++.|++..+.. +.+...+..+...+...|++++|++.|++.....+.+...+..+...|. .++.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCH
Confidence 2346778899999999999999875 4567778888999999999999999999965444555666655555553 2344
Q ss_pred HHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 048749 274 YEAKRFWKDIIKSKC--------EPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE 345 (536)
Q Consensus 274 ~~A~~~~~~m~~~g~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 345 (536)
++|..+++.+..... ......+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 555555443321100 0001123333444445555555555555555431 1133344445555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHH--------------------------------------------HHHHHHHhcCCHHHH
Q 048749 346 ALEVLREMKNRGCLPNVTTYN--------------------------------------------SLIKHLCKIKRMETV 381 (536)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~--------------------------------------------~li~~~~~~~~~~~A 381 (536)
|...++++.+.... +...+. .+...+...|+.++|
T Consensus 514 A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 55555555432211 222222 233445556666666
Q ss_pred HHHHHHHHhcCCCCCCcHHH---HHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 048749 382 YEYLDEMEQKNGSCLPNEIT---FNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEME 458 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~~---~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 458 (536)
.++++. . ..+... ...+....++.++|.+.++...+.. +.+...+..++..|...|++++|++.++...
T Consensus 593 ~~~l~~----~---p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 593 EALLRQ----Q---PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHh----C---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 666551 1 112222 2222333467778888888888764 4468888899999999999999999999887
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---cHHHHHHHHHHHHhhhhhhhhhHHHHH-hhhcc
Q 048749 459 KKGMGP-DQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGM--VP---EPRTGILVNDMNIKLKERGEQGKKVIK-LTSLG 531 (536)
Q Consensus 459 ~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~t~~~l~~~~~~~~~~~~a~~~~~~-~~~~g 531 (536)
+. .| +...+..+..++...|++++|.+++++++...- .| +...+..+..++...|+.++|.+.+++ |...|
T Consensus 665 ~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~ 742 (1157)
T PRK11447 665 AT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASG 742 (1157)
T ss_pred cc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Confidence 64 33 455677778888899999999999999887532 22 223456667888899999999999888 44456
Q ss_pred CCCC
Q 048749 532 LKGN 535 (536)
Q Consensus 532 ~~p~ 535 (536)
+.|.
T Consensus 743 ~~~~ 746 (1157)
T PRK11447 743 ITPT 746 (1157)
T ss_pred CCCC
Confidence 6553
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=6e-17 Score=167.43 Aligned_cols=316 Identities=10% Similarity=0.017 Sum_probs=220.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
.|+++.|+.+++.+.... +-+...+..++..+...|++++|...|+++. .+.+...|..+...+.+.|++++|++.
T Consensus 55 ~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred cCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 368889998888887763 4456667777777778999999999999887 667777888888888999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEP 290 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 290 (536)
|++..+.. +.+...+..+...+...|++++|...++.+....+.+...+..++ .+...|++++|...++.+.+....+
T Consensus 133 l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~ 210 (656)
T PRK15174 133 AEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALE 210 (656)
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 99888753 455677888888888999999998888876443344444554443 4778899999999988887664334
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHH
Q 048749 291 DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE----ALEVLREMKNRGCLPNVTTYN 366 (536)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~ 366 (536)
+...+..+..++...|++++|+..++++.+.. +.+...+..+...+...|++++ |...|++..+.... +...+.
T Consensus 211 ~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~ 288 (656)
T PRK15174 211 RQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVT 288 (656)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHH
Confidence 44455556677888899999999999888763 3356677788888888898885 78888888775432 577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHH-HHH---HHHHhcCCCChHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 048749 367 SLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEI-TFN---YLLKSLKKPEEVPWVLERMERNGCKMS-TDTYNVILKLY 441 (536)
Q Consensus 367 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~-~~~---~ll~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 441 (536)
.+...+.+.|++++|...+++..+.. |+.. .+. .++...++.++|...++.+.+.. |+ ...+..+..++
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~----P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al 362 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATH----PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAAL 362 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence 88888889999999999998888755 3311 111 11112234444444444444321 12 12222334445
Q ss_pred HccCChhHHHHHHHHHHHC
Q 048749 442 VNWDCEDKVRHTWEEMEKK 460 (536)
Q Consensus 442 ~~~g~~~~A~~~~~~m~~~ 460 (536)
...|+.++|...|++..+.
T Consensus 363 ~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 363 LQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHCCCHHHHHHHHHHHHHh
Confidence 5555555555555555543
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=6.3e-17 Score=167.27 Aligned_cols=327 Identities=11% Similarity=0.012 Sum_probs=263.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048749 158 VFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCR 235 (536)
Q Consensus 158 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 235 (536)
-...++..+.+.|++++|..+++... .+.+...+..++.+....|++++|++.|+++.+.. +.+...+..+...+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 34556778889999999999999887 56667788888888999999999999999999875 5667788889999999
Q ss_pred cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 048749 236 YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLF 315 (536)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 315 (536)
.|++++|...+++.....+.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 99999999999997655567888999999999999999999999998876642 233344333 3478899999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhc
Q 048749 316 QAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMET----VYEYLDEMEQK 391 (536)
Q Consensus 316 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~----A~~~~~~m~~~ 391 (536)
+.+.+....++...+..+..++.+.|++++|+..++++.+.... +...+..+...|...|++++ |...|++..+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 99887643344555566678889999999999999999876533 67788889999999999986 89999999886
Q ss_pred CCCCCCc-HHHHH---HHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH
Q 048749 392 NGSCLPN-EITFN---YLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQR 467 (536)
Q Consensus 392 ~~~~~p~-~~~~~---~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 467 (536)
. |+ ...+. .++...++.++|...++...+.. +.+...+..+...|.+.|++++|...++++.+. .|+..
T Consensus 280 ~----P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~ 352 (656)
T PRK15174 280 N----SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTS 352 (656)
T ss_pred C----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccch
Confidence 5 43 33333 33444477788888888888764 445677888899999999999999999999876 45543
Q ss_pred H-HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 468 S-YTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 468 ~-~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
. +..+..++...|+.++|...|++..+.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3 334567788999999999999999875
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=3.6e-16 Score=162.19 Aligned_cols=81 Identities=10% Similarity=0.042 Sum_probs=71.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
.++++.|+..|+.+++. .|+...|..+..+|.+.|++++|++.++... .+.+...|..+..+|...|++++|+.-
T Consensus 140 ~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred cCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 47999999999999874 4678889999999999999999999999987 667788999999999999999999987
Q ss_pred HHHHHH
Q 048749 211 FDRRKE 216 (536)
Q Consensus 211 ~~~m~~ 216 (536)
|.....
T Consensus 217 ~~~~~~ 222 (615)
T TIGR00990 217 LTASCI 222 (615)
T ss_pred HHHHHH
Confidence 765543
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=1e-15 Score=169.12 Aligned_cols=359 Identities=11% Similarity=0.055 Sum_probs=233.2
Q ss_pred HHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHH------------HHH
Q 048749 165 VLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELD-DLSAF------------QNL 229 (536)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~------------~~l 229 (536)
.+...|++++|+..|++.. .+.+...+..+...+.+.|++++|+..|++..+..-.. ....+ ...
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 3455677777777776665 44566667777777777777777777777766543111 11111 112
Q ss_pred HHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 048749 230 LLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLG 309 (536)
Q Consensus 230 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 309 (536)
...+.+.|++++|...|++.....+.+...+..+...+...|++++|++.|++..+.. +.+...+..+...+. .++.+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHH
Confidence 3345566777777777776544445556666666777777777777777777766543 233445555555553 34566
Q ss_pred HHHHHHHHHHHcCCC--------CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 310 TALRLFQAMWEKGRK--------PDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381 (536)
Q Consensus 310 ~a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A 381 (536)
+|+.+++.+...... .....+..+...+...|++++|++.|++..+.... +...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 666666554322100 01123445566778899999999999999886433 567788899999999999999
Q ss_pred HHHHHHHHhcCCCCCCcHH-HHHHHHHhcCCCChHHHHHHHHH----------------------------HC-------
Q 048749 382 YEYLDEMEQKNGSCLPNEI-TFNYLLKSLKKPEEVPWVLERME----------------------------RN------- 425 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~-~~~~ll~~~~~~~~a~~~~~~~~----------------------------~~------- 425 (536)
...++++.+..+ ..|+.. .+..++...++.++|...++.+. ..
T Consensus 515 ~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 999999987552 122211 11111111122222222221110 00
Q ss_pred ----CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-
Q 048749 426 ----GCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPE- 500 (536)
Q Consensus 426 ----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 500 (536)
..+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.++...+. .|+
T Consensus 594 ~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~ 670 (1157)
T PRK11447 594 ALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDS 670 (1157)
T ss_pred HHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCC
Confidence 124556677788899999999999999999999863 336788999999999999999999999987753 454
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 501 PRTGILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 501 ~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
..+...+..++...|+.++|.+.+.++.+.
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 444667788888999999999999987543
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=1.2e-17 Score=157.75 Aligned_cols=354 Identities=12% Similarity=0.047 Sum_probs=181.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNE-KTYGILLNRYAAAHMVEEAIGVF 211 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~ 211 (536)
|+.+.|+..+..+++.. +.....|..+..+|...|+.+.|.+.|.+.. ..|+. ...+-+...+-..|++++|...|
T Consensus 130 g~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 45555555555555542 2234555555555555555555555555443 12222 22222333333455555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048749 212 DRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPD 291 (536)
Q Consensus 212 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 291 (536)
.+.++.. +-=..+|..|...+-..|+...|.+.|++...--+--...|..|...|...+.+++|...+....... +-.
T Consensus 208 lkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 208 LKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 5555432 11233455555555555666666655555433223334455555566656666666665555544332 223
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048749 292 SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPD-VVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIK 370 (536)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 370 (536)
.+.+..|...|...|.+|.|+..|++..+. .|+ ...|+.|..++-..|++.+|++.+++....... .....+.|..
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgn 362 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGN 362 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHH
Confidence 445555555566666666666666665553 222 345666666666666666666666665544211 3445555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhH
Q 048749 371 HLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMS-TDTYNVILKLYVNWDCEDK 449 (536)
Q Consensus 371 ~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 449 (536)
.|...|.+++|..+|....+-.+.+..-.....+++.--++.++|...+++... +.|+ ...|+.+...|-..|+++.
T Consensus 363 i~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHH
Confidence 666666666666666665553311111111122333333445555555554443 2333 3556666666666666666
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 048749 450 VRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPE 500 (536)
Q Consensus 450 A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 500 (536)
|.+.+.+.... .|. ....+.|...|-..|++.+|+.-+++.++ ++||
T Consensus 441 A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 441 AIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred HHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 66666555543 333 34455566666666666666666665554 4444
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.81 E-value=9.6e-17 Score=151.66 Aligned_cols=397 Identities=12% Similarity=0.071 Sum_probs=320.5
Q ss_pred CHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 048749 121 TDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRY 198 (536)
Q Consensus 121 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~ 198 (536)
..-.+++.+.....+.+...+.-...++.. +.-..+|..+.+++-..|++.+|+.+++.+. .+.....|..+..++
T Consensus 83 ~~llll~ai~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al 160 (966)
T KOG4626|consen 83 ERLLLLSAIFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAAL 160 (966)
T ss_pred cceeeehhhhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHH
Confidence 334555555555557777766666666653 4567899999999999999999999999988 667788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 199 AAAHMVEEAIGVFDRRKEFGELDDLSAF-QNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAK 277 (536)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 277 (536)
...|+.+.|.+.|.+.++. .|+.... ..+...+...|++++|...+.+.....+--..+|+.|...+-..|++..|+
T Consensus 161 ~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~ai 238 (966)
T KOG4626|consen 161 VTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAI 238 (966)
T ss_pred HhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHH
Confidence 9999999999999998875 4665544 445566667899999999988854433455678999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 278 RFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 278 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
+.|++..+.+ +--...|-.|...|...+.+++|...|.+.... -+.....+..+...|...|.++.|++.+++..+.
T Consensus 239 q~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~- 315 (966)
T KOG4626|consen 239 QHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL- 315 (966)
T ss_pred HHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-CCcchhhccceEEEEeccccHHHHHHHHHHHHhc-
Confidence 9999998764 223568999999999999999999999988774 2234667888888899999999999999999876
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHh---cCCCChHHHHHHHHHHCCCCCCHHH
Q 048749 358 CLPN-VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKS---LKKPEEVPWVLERMERNGCKMSTDT 433 (536)
Q Consensus 358 ~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 433 (536)
.|+ ...|+.|..++-..|++.+|.+.|.+...-.+ -.....+-|-.. .++.++|..++....+.. +-=...
T Consensus 316 -~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p---~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa 390 (966)
T KOG4626|consen 316 -QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP---NHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAA 390 (966)
T ss_pred -CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhh
Confidence 455 67899999999999999999999999988652 122334444333 478899999888777642 222567
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH-HHHHHHHHH
Q 048749 434 YNVILKLYVNWDCEDKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPR-TGILVNDMN 511 (536)
Q Consensus 434 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l~~~~ 511 (536)
++.|...|-.+|++++|+..+++..+- .|+ ...|+.+-..|-..|+.+.|...+.+.+. +.|.-. ....|..++
T Consensus 391 ~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 391 HNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIY 466 (966)
T ss_pred hhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHh
Confidence 889999999999999999999999874 676 46899999999999999999999999886 567644 488999999
Q ss_pred HhhhhhhhhhHHHHHhhhccCCCC
Q 048749 512 IKLKERGEQGKKVIKLTSLGLKGN 535 (536)
Q Consensus 512 ~~~~~~~~a~~~~~~~~~~g~~p~ 535 (536)
...|...+|...++.. +.++||
T Consensus 467 kDsGni~~AI~sY~~a--LklkPD 488 (966)
T KOG4626|consen 467 KDSGNIPEAIQSYRTA--LKLKPD 488 (966)
T ss_pred hccCCcHHHHHHHHHH--HccCCC
Confidence 9999999999999987 445665
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=1.7e-15 Score=160.02 Aligned_cols=408 Identities=10% Similarity=0.011 Sum_probs=246.9
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHhhcC-CCCCHH---HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 048749 90 IAINVQNILKTCSVSTKGEIEKALNQCE-LTLTDD---LIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDV 165 (536)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~---~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 165 (536)
.+.+|..+..-.... .++........ ..+.+. ..+..+....++++.|.++++.+.... +.+...+..+..+
T Consensus 17 ~~~d~~~ia~~~g~~--~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~ 92 (765)
T PRK10049 17 QIADWLQIALWAGQD--AEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 455555555433322 33434443332 222222 333334444568888888888877753 4566677777788
Q ss_pred HHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 166 LGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAE 243 (536)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 243 (536)
+.+.|++++|+..+++.. .+.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..+.|.
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHH
Confidence 888888888888888876 555666 7777778888888888888888888754 445556666777777778888888
Q ss_pred HHHHHhcCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHH
Q 048749 244 TFFESEKNEFGYDI------KTMNIILNGWC-----VLGNV---YEAKRFWKDIIKS-KCEPDSV-TY----ATFVNALT 303 (536)
Q Consensus 244 ~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~~~~~-~~----~~li~~~~ 303 (536)
..++.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+ ...+.++.
T Consensus 171 ~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 171 GAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 77776543 2221 11222222222 12233 6677777777653 1122221 11 11133455
Q ss_pred hcCCHhHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHH
Q 048749 304 KKGKLGTALRLFQAMWEKGRK-PDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLP---NVTTYNSLIKHLCKIKRME 379 (536)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~~~~~ 379 (536)
..|++++|+..|+.+.+.+-. |+. ....+..+|...|++++|+..|+++.+..... ....+..+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 668888888888888776432 222 22224667888888888888888876543211 1344556666778888888
Q ss_pred HHHHHHHHHHhcCC---------CCCCcHH------HHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048749 380 TVYEYLDEMEQKNG---------SCLPNEI------TFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNW 444 (536)
Q Consensus 380 ~A~~~~~~m~~~~~---------~~~p~~~------~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 444 (536)
+|.++++.+....+ ...|+.. ....++..-++.++|.++++.+.... +-+...+..+...+...
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 88888888776531 0112211 11222333366677777777766543 44566777777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Q 048749 445 DCEDKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMN 511 (536)
Q Consensus 445 g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~ 511 (536)
|++++|++.+++..+. .|+ ...+..+...+...|++++|+.+++++++ ..|+......+....
T Consensus 407 g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 407 GWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred CCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 7777777777777765 344 45555566667777777777777777776 356655544444433
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=6.2e-15 Score=155.81 Aligned_cols=400 Identities=12% Similarity=0.032 Sum_probs=299.0
Q ss_pred CCCHHHHHHHHHh--ccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHH
Q 048749 119 TLTDDLIVNVINR--YRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGIL 194 (536)
Q Consensus 119 ~~~~~~~~~~l~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 194 (536)
..++..+...+.- ..|+.+.|++++..+.... +.+...+..+...+.+.|++++|.++|++.. .+.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4555555444332 3479999999999998632 4567789999999999999999999999976 56778889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 195 LNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVY 274 (536)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 274 (536)
...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...+++.....+.+...+..+...+...|..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 999999999999999999998864 55566 8888899999999999999999976666778888888888999999999
Q ss_pred HHHHHHHHHHHCCCCCC------HHHHHHHHHHHH-----hcCCH---hHHHHHHHHHHHc-CCCCCHh-hHH----HHH
Q 048749 275 EAKRFWKDIIKSKCEPD------SVTYATFVNALT-----KKGKL---GTALRLFQAMWEK-GRKPDVV-TCN----CII 334 (536)
Q Consensus 275 ~A~~~~~~m~~~g~~~~------~~~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-g~~p~~~-~~~----~li 334 (536)
.|++.++.... .|+ ......++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 99999886653 221 112333333333 22334 7889999998864 2333321 111 113
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHHhc---
Q 048749 335 DALCFKKRIPEALEVLREMKNRGCL-PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLP-NEITFNYLLKSL--- 409 (536)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p-~~~~~~~ll~~~--- 409 (536)
.++...|++++|+..|+.+.+.+.. |+.. -..+...|...|++++|...|+++.+..+...+ .......+..++
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3456779999999999999887632 3322 222567899999999999999998876531111 123344443333
Q ss_pred CCCChHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048749 410 KKPEEVPWVLERMERNG-----------CKMS---TDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHG 475 (536)
Q Consensus 410 ~~~~~a~~~~~~~~~~~-----------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 475 (536)
++.++|...++.+.+.. -.|+ ...+..+...+...|+.++|+++++++.... +-+...+..+...
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 67778888888887642 1123 2356677888999999999999999998763 4457788899999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHhhhhhhhhhHHHHHhhh
Q 048749 476 LYDKGRLEDALSYFHEMRLKGMVPEP-RTGILVNDMNIKLKERGEQGKKVIKLTS 529 (536)
Q Consensus 476 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~~~~~~a~~~~~~~~~ 529 (536)
+...|++++|++.+++.++. .||. .........+...++.++|.+.+.++.+
T Consensus 403 ~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999874 5774 4467777788889999999999998854
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=3.9e-14 Score=147.07 Aligned_cols=395 Identities=11% Similarity=0.089 Sum_probs=244.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHH--HHHHHh
Q 048749 124 LIVNVINRYRFDWEAAYTFFKWVSREGDYSPGS-NVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGIL--LNRYAA 200 (536)
Q Consensus 124 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l--i~~~~~ 200 (536)
....++....|+++.|+..|+.+.+.. +.+. .++ .++..++..|+.++|+..+++...+.+...+..+ ...+..
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 334444444566677777777766643 2221 233 6666666667777777777666522222233333 446666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 201 AHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFW 280 (536)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 280 (536)
.|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.+
T Consensus 115 ~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 115 EKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER-DPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 677777777777766654 334555556666666667777777766665443 233333433333333345554566666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHhH------------------------------------------------HH
Q 048749 281 KDIIKSKCEPDSVTYATFVNALTKKGKLGT------------------------------------------------AL 312 (536)
Q Consensus 281 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~------------------------------------------------a~ 312 (536)
+++.+.. +-+...+..++.++.+.|-... |+
T Consensus 193 ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 193 SEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 6666654 3344444444455444443333 33
Q ss_pred HHHHHHHHc-CCCCCH-hh----HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 313 RLFQAMWEK-GRKPDV-VT----CNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLD 386 (536)
Q Consensus 313 ~~~~~m~~~-g~~p~~-~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 386 (536)
.-++.+... +..|.. .. ..-.+-++.+.|++.++++.|+.+...|.+....+-..+.++|...+++++|..+|.
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 333333331 111221 11 123345677888999999999999888766555677788899999999999999999
Q ss_pred HHHhcCCC---CCCcHHHHHHHHHhc---CCCChHHHHHHHHHHCCC-----------CC--CH-HHHHHHHHHHHccCC
Q 048749 387 EMEQKNGS---CLPNEITFNYLLKSL---KKPEEVPWVLERMERNGC-----------KM--ST-DTYNVILKLYVNWDC 446 (536)
Q Consensus 387 ~m~~~~~~---~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~-----------~~--~~-~~~~~li~~~~~~g~ 446 (536)
.+....+. ..++......|..++ .+.++|..+++.+.+... .| |- ..+..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 88665421 122333345666666 556677788888876311 12 21 234456677888999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHhhhhhhhhhHHHH
Q 048749 447 EDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEP-RTGILVNDMNIKLKERGEQGKKVI 525 (536)
Q Consensus 447 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~~~~~~a~~~~~ 525 (536)
+.+|++.++++.... +-|...+..+.+.+...|.+.+|++.++.... +.|+. .+...........+++.+|.+.+.
T Consensus 432 l~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 432 LPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999987653 44778888888899999999999999976665 35654 447778888888899988888887
Q ss_pred Hh
Q 048749 526 KL 527 (536)
Q Consensus 526 ~~ 527 (536)
++
T Consensus 509 ~l 510 (822)
T PRK14574 509 DV 510 (822)
T ss_pred HH
Confidence 76
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=2.8e-14 Score=148.16 Aligned_cols=354 Identities=13% Similarity=0.029 Sum_probs=225.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
.++++.|++.++.+.+.. +.+..+|..+..+|...|++++|+.-|.... ...+......++..+........+...
T Consensus 173 l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~ 250 (615)
T TIGR00990 173 LGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEI 250 (615)
T ss_pred hCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999864 5578899999999999999999998776554 112211111111111111001111111
Q ss_pred HHHHHH--------------c-------------CCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHhcC-C--CCCC
Q 048749 211 FDRRKE--------------F-------------GELDDL-SAFQNLLLW---LCRYKHVEVAETFFESEKN-E--FGYD 256 (536)
Q Consensus 211 ~~~m~~--------------~-------------g~~~~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~-~--~~~~ 256 (536)
++.-.. . ...+.. ..+..+... ....+++++|...|+.... + .+..
T Consensus 251 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~ 330 (615)
T TIGR00990 251 LETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKE 330 (615)
T ss_pred HhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhh
Confidence 110000 0 000000 000000000 0123567888888887432 1 2334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048749 257 IKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDA 336 (536)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 336 (536)
...|+.+...+...|++++|+..|++..+.. +-+...|..+...+...|++++|...|++..+.. +.+..+|..+...
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~ 408 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQL 408 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5567777777888888888888888877653 2335577777788888888888888888877752 3356677778888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHH---HHHhcCCCC
Q 048749 337 LCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNY---LLKSLKKPE 413 (536)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~---ll~~~~~~~ 413 (536)
+...|++++|...|++..+.... +...+..+...+.+.|++++|+..|++.....+ .+...++. ++...++.+
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P---~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP---EAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHccCHH
Confidence 88888888888888888765422 466677777788888888888888888876542 12233332 333346667
Q ss_pred hHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 414 EVPWVLERMERNGCKMST------DTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALS 487 (536)
Q Consensus 414 ~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 487 (536)
+|.+.++...+.....+. ..++..+..+...|++++|.+++++..+.. +.+...+..+...+.+.|++++|++
T Consensus 485 ~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 485 EAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 777777776654321111 112223333445799999999999988764 2244578889999999999999999
Q ss_pred HHHHHHHC
Q 048749 488 YFHEMRLK 495 (536)
Q Consensus 488 ~~~~m~~~ 495 (536)
+|++..+.
T Consensus 564 ~~e~A~~l 571 (615)
T TIGR00990 564 LFERAAEL 571 (615)
T ss_pred HHHHHHHH
Confidence 99998765
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=8.8e-14 Score=126.33 Aligned_cols=318 Identities=13% Similarity=0.222 Sum_probs=183.4
Q ss_pred HHHHHHhhCCCCChhHHHHHHhhcCCCCCHHHHHHHHHh---c-cCCHHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 048749 93 NVQNILKTCSVSTKGEIEKALNQCELTLTDDLIVNVINR---Y-RFDWEAA-YTFFKWVSREGDYSPGSNVFNAILDVLG 167 (536)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~---~-~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~li~~~~ 167 (536)
.+..++.+....+..-+.+.+++.|+.+++..-+.+++- + ..++--| .+-|-.+.+.+ .-+..+|
T Consensus 121 nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW-------- 190 (625)
T KOG4422|consen 121 NLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG--EDSTSSW-------- 190 (625)
T ss_pred HHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc--ccccccc--------
Confidence 444555554444445667777778888887766665543 1 1122211 22222222221 1122222
Q ss_pred ccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 168 RARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFE 247 (536)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 247 (536)
+.|.+.+ -+|+.. +.+..+|.+||.++|+--..+.|.++|++......+.+..+||.+|.+-.-... .+++.
T Consensus 191 K~G~vAd--L~~E~~--PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~ 262 (625)
T KOG4422|consen 191 KSGAVAD--LLFETL--PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVA 262 (625)
T ss_pred ccccHHH--HHHhhc--CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHH
Confidence 3344433 334443 355567777888777777777777777777776667777777777765443322 44555
Q ss_pred Hh-cCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH-HHHHHHHHHHc
Q 048749 248 SE-KNEFGYDIKTMNIILNGWCVLGNVYE----AKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGT-ALRLFQAMWEK 321 (536)
Q Consensus 248 ~~-~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 321 (536)
+| ...+.||..|+|+++.+.++.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ +..++.++...
T Consensus 263 EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 263 EMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 54 44567778888888877777777664 45566777777777877777777777777766543 33444444332
Q ss_pred --C--CC----CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 322 --G--RK----PDVVTCNCIIDALCFKKRIPEALEVLREMKNRG----CLPN---VTTYNSLIKHLCKIKRMETVYEYLD 386 (536)
Q Consensus 322 --g--~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~~~~~~A~~~~~ 386 (536)
| ++ .|...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-+..|+
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22 244556666777777777777776665553221 1222 2234555666666667777777777
Q ss_pred HHHhcCCCCCCcHHHHHHHHHhc---CCCChHHHHHHHHHHCCCCCC
Q 048749 387 EMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNGCKMS 430 (536)
Q Consensus 387 ~m~~~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~ 430 (536)
.|.-.- ..|+..+...++++. ++.+-.-++|..++..|...+
T Consensus 423 ~lVP~~--y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 423 DLVPSA--YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred Hhccce--ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 776555 556666666666654 233344455555555543333
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=4.1e-12 Score=132.21 Aligned_cols=395 Identities=12% Similarity=0.094 Sum_probs=288.1
Q ss_pred hHHHHHHhhcC--CCCCHHHHH--HHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhC
Q 048749 107 GEIEKALNQCE--LTLTDDLIV--NVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEM 182 (536)
Q Consensus 107 ~~~~~~l~~~~--~~~~~~~~~--~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 182 (536)
.++...+++.- ...+...++ ..+....++++.|+++++.+.+.. +.++..+..++..+.+.++.++|++.++++
T Consensus 85 ~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 85 QEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 45555555542 344455555 346666689999999999999875 566788888899999999999999999999
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHH-
Q 048749 183 P-DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTM- 260 (536)
Q Consensus 183 ~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 260 (536)
. ..++...+-.++..+...++..+|++.++++.+.. +.+...+..+..++.+.|-...|.++..+-..-+.+....+
T Consensus 163 ~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l 241 (822)
T PRK14574 163 AERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL 241 (822)
T ss_pred cccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH
Confidence 8 44555555444444444566666999999999875 56677888999999999999999988877554443333222
Q ss_pred -----HHHHHHH-----HhcCC---HHHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 048749 261 -----NIILNGW-----CVLGN---VYEAKRFWKDIIKS-KCEPDS-V----TYATFVNALTKKGKLGTALRLFQAMWEK 321 (536)
Q Consensus 261 -----~~li~~~-----~~~g~---~~~A~~~~~~m~~~-g~~~~~-~----~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (536)
..+++.- ....+ .+.|+.-++.+... +-.|.. . ...-.+-++...|+..++++.|+.+...
T Consensus 242 ~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~ 321 (822)
T PRK14574 242 ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE 321 (822)
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence 1111110 01122 34455555555542 222322 2 2234566788999999999999999999
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---
Q 048749 322 GRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG-----CLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNG--- 393 (536)
Q Consensus 322 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--- 393 (536)
|.+...++-..+.++|...+++++|+.+|..+.... ..++......|.-+|...+++++|..+++++.+..+
T Consensus 322 ~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~ 401 (822)
T PRK14574 322 GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQV 401 (822)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEE
Confidence 877667788999999999999999999999986542 223455567899999999999999999999988432
Q ss_pred --------CCCCcHHHHHHHHHh----cCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 048749 394 --------SCLPNEITFNYLLKS----LKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKG 461 (536)
Q Consensus 394 --------~~~p~~~~~~~ll~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 461 (536)
...||...+-.+... .++..+|++.++.+.... +-|......+.+.+...|.+.+|.+.++.....
T Consensus 402 ~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l- 479 (822)
T PRK14574 402 GVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL- 479 (822)
T ss_pred eccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-
Confidence 133455555433332 378899999999997764 668999999999999999999999999877765
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 048749 462 MGP-DQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVND 509 (536)
Q Consensus 462 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~ 509 (536)
.| +..+......++...|++++|..+.+...+ ..|+......+..
T Consensus 480 -~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~r 525 (822)
T PRK14574 480 -APRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELDR 525 (822)
T ss_pred -CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHHH
Confidence 44 456677788888899999999999999887 4676665444444
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.69 E-value=1.2e-11 Score=131.49 Aligned_cols=381 Identities=11% Similarity=0.059 Sum_probs=260.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGR-ARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVF 211 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 211 (536)
.++|+.|++.+..+.+.+ +.+..-...+..+|.+ .++ +++..+++.. ...+...+..+...|.+.|+.++|.+++
T Consensus 195 l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~-lk~d~~l~~ala~~yi~~G~~~~A~~~L 270 (987)
T PRK09782 195 LKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQG-IFTDPQSRITYATALAYRGEKARLQHYL 270 (987)
T ss_pred HhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh-cccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 468888888888888875 4455556667777776 366 7777776542 2357778888888888888888888888
Q ss_pred HHHHHcCCC-CCHHHHHHH------------------------------HHHH---------------------------
Q 048749 212 DRRKEFGEL-DDLSAFQNL------------------------------LLWL--------------------------- 233 (536)
Q Consensus 212 ~~m~~~g~~-~~~~~~~~l------------------------------l~~~--------------------------- 233 (536)
+++...-.. |...++.-+ +..+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 350 (987)
T PRK09782 271 IENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYA 350 (987)
T ss_pred HhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHh
Confidence 876543211 222222111 1112
Q ss_pred ------------------------------------HhcCCHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHhcCC--
Q 048749 234 ------------------------------------CRYKHVEVAETFFESEKN---EFGYDIKTMNIILNGWCVLGN-- 272 (536)
Q Consensus 234 ------------------------------------~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~-- 272 (536)
.+.|+.++|..+++..-. ....+....+.++..|.+.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred hccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 334455555555555321 111234445566666666555
Q ss_pred -HHHHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 048749 273 -VYEAKRF----------------------WKDIIKS-KC-EP--DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP 325 (536)
Q Consensus 273 -~~~A~~~----------------------~~~m~~~-g~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 325 (536)
..+|..+ .+..... +. ++ +...|..+..++.. ++.++|...+.+.... .|
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QP 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CC
Confidence 2222222 1111110 11 23 55666777766665 7888899877777764 36
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q 048749 326 DVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYL 405 (536)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~l 405 (536)
+......+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...+++..+.. ..+...+..+
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~---P~~~~l~~~L 582 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG---LGDNALYWWL 582 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CccHHHHHHH
Confidence 6555444555567899999999999988654 3445556677788899999999999999998765 1223333344
Q ss_pred HHhc---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 406 LKSL---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRL 482 (536)
Q Consensus 406 l~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 482 (536)
.... ++.++|...++...+. .|+...+..+...+.+.|+.++|...+++..+.. +-+...++.+..++...|++
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 4455 8888999888888875 3568889999999999999999999999999873 23566778888899999999
Q ss_pred HHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 483 EDALSYFHEMRLKGMVPE-PRTGILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 483 ~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
++|+..+++.++. .|+ +..+..+..++...|+.++|...+.+..+.
T Consensus 660 eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 660 AQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999999874 564 555889999999999999999999887443
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.4e-12 Score=118.69 Aligned_cols=338 Identities=12% Similarity=0.116 Sum_probs=249.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048749 153 SPGSNVFNAILDVLGRARRFVELIQVFDEMP---DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNL 229 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 229 (536)
+-+..++..||..+++--..+.|.+++++.. ...+..+||.+|.+-.-..+ .++..+|....+.||..|||++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 4577899999999999999999999999877 66888899999987554332 7889999999999999999999
Q ss_pred HHHHHhcCCHHHHHH----HHHHhc-CCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC--C--C---CC-CHHHH
Q 048749 230 LLWLCRYKHVEVAET----FFESEK-NEFGYDIKTMNIILNGWCVLGNVYE-AKRFWKDIIKS--K--C---EP-DSVTY 295 (536)
Q Consensus 230 l~~~~~~~~~~~a~~----~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--g--~---~~-~~~~~ 295 (536)
+.+..+.|+++.|.. ++.+|+ -|+.|...+|..+|..+++.++..+ |..++.++... | + .| |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998887654 445553 4789999999999999999888754 55555555431 2 2 22 34557
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcC----CCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048749 296 ATFVNALTKKGKLGTALRLFQAMWEKG----RKPD---VVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSL 368 (536)
Q Consensus 296 ~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 368 (536)
...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 778888999999999988876655431 2232 234667788888889999999999999877777888888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCC---------h--------HHH-------HHHHHHH
Q 048749 369 IKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPE---------E--------VPW-------VLERMER 424 (536)
Q Consensus 369 i~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~---------~--------a~~-------~~~~~~~ 424 (536)
+++..-.|.++-.-+++.+++.-| ..-+...-..++.-+++.. + |.. .-.++.+
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~g--ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYG--HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 999999999999999999988877 2222222222222222110 0 001 1122333
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048749 425 NGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGM----GPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMV 498 (536)
Q Consensus 425 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 498 (536)
........+.+...+.+.|..++|.+++..+.+.+- .|.......+++.-.+.++.-.|..+++-|...+..
T Consensus 518 --~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 518 --QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred --ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 345567788888899999999999999999976543 234444556777778889999999999999876653
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.64 E-value=1.2e-11 Score=131.58 Aligned_cols=311 Identities=12% Similarity=0.036 Sum_probs=191.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCC-C----CCHHHHHHHHHHHHhcCC---HHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPD-L----VNEKTYGILLNRYAAAHM---VEE 206 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~----~~~~~~~~li~~~~~~g~---~~~ 206 (536)
...++.+....+.+.. +-+....-.+.-...+.|+.++|.++|+.... . .+....+-++..|.+.+. ..+
T Consensus 357 ~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 357 NKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred chhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 4444544455555542 33566666666666777888888888877651 1 233344466666666655 333
Q ss_pred HHHH----------------------HHHHHH-cCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHH
Q 048749 207 AIGV----------------------FDRRKE-FGE-LD--DLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTM 260 (536)
Q Consensus 207 A~~~----------------------~~~m~~-~g~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 260 (536)
++.+ ++.... .+. ++ +...|..+..++.. ++.++|...+...... .|+....
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-~Pd~~~~ 512 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-QPDAWQH 512 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-CCchHHH
Confidence 3222 111111 111 34 67778888877776 7888898877774332 2454444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 048749 261 NIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFK 340 (536)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 340 (536)
..+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...++...+.. +.+...+..+.....+.
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhC
Confidence 44455556899999999999987654 4555566777788889999999999999998864 22333333344444566
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHH----HHHHhcCCCChHH
Q 048749 341 KRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFN----YLLKSLKKPEEVP 416 (536)
Q Consensus 341 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~----~ll~~~~~~~~a~ 416 (536)
|++++|...+++..+. .|+...|..+...+.+.|++++|...|.+..... |+...+. .++...++.+++.
T Consensus 590 Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~----Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 590 GQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE----PNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999876 4678888889999999999999999999998865 4321111 1111223333444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 048749 417 WVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEK 459 (536)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 459 (536)
..++...+.. +-+...+..+..++...|++++|...+++..+
T Consensus 664 ~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 664 EMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444443322 22344444445555555555555555554444
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.63 E-value=3.1e-12 Score=127.85 Aligned_cols=412 Identities=12% Similarity=0.116 Sum_probs=257.2
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHhcc---CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--
Q 048749 109 IEKALNQCELTLTDDLIVNVINRYR---FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-- 183 (536)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~l~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 183 (536)
+.++|+-.+..++....++++.... ..+..++..+..+-..+ ..++.+.+.|.+.|.-.|++..++.+.+.+.
T Consensus 222 ~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 222 FERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 3444444443333334444443322 24566777777776654 4567778888888888888888888777765
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHH
Q 048749 184 ---DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTM 260 (536)
Q Consensus 184 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 260 (536)
...-..+|-.+.++|-..|++++|...|.+..+..-.-....+..+...+.+.|+++.+...|+.+....+.+..+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 12333457777888888888888888887666543111134455677778888888888888888765556667777
Q ss_pred HHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH----HcCCCCCHhhHHH
Q 048749 261 NIILNGWCVLG----NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMW----EKGRKPDVVTCNC 332 (536)
Q Consensus 261 ~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~p~~~~~~~ 332 (536)
..|...|+..+ ..+.|..++....+.- +.|...|-.+...+....-+. ++.+|.... ..+-.+.+...|.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 77777776654 3455555555554433 345556665555554433332 255544433 3344466667777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC---CCCCCH------H-HHH-------------------H-------HHHHHHhc-
Q 048749 333 IIDALCFKKRIPEALEVLREMKNR---GCLPNV------T-TYN-------------------S-------LIKHLCKI- 375 (536)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~------~-~~~-------------------~-------li~~~~~~- 375 (536)
+...+...|++.+|...|...... -..+|. . -|| . .|.+|.+.
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh
Confidence 777777777777777777666433 111111 1 111 1 13333333
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCCcHHHHHH------------------H--------------------HHhcCC
Q 048749 376 ------KRMETVYEYLDEMEQKNGSCLPNEITFNY------------------L--------------------LKSLKK 411 (536)
Q Consensus 376 ------~~~~~A~~~~~~m~~~~~~~~p~~~~~~~------------------l--------------------l~~~~~ 411 (536)
+...+|...++.....+. ..|+..++-. + +.++.+
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 455566666666554432 3344443321 1 111111
Q ss_pred -----------CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048749 412 -----------PEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKG 480 (536)
Q Consensus 412 -----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 480 (536)
.+.|.++|..+.+.. +-|...-|-+.-.++.+|++.+|..+|.+..+... -+..+|-.+.++|...|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHH
Confidence 123445555555543 44677778888888999999999999999988643 24567888999999999
Q ss_pred CHHHHHHHHHHHHHCCC-CCcHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 048749 481 RLEDALSYFHEMRLKGM-VPEPRTGILVNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 481 ~~~~A~~~~~~m~~~g~-~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~ 527 (536)
++..|+++|+...++-. .-++.....|.+++.+.|...++.+.+.+.
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999998777644 345556899999999999999888887765
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=3.2e-12 Score=124.79 Aligned_cols=282 Identities=10% Similarity=0.035 Sum_probs=190.1
Q ss_pred cCCHHHHHHHHHhCCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHH
Q 048749 169 ARRFVELIQVFDEMPD-LVNEKTYGIL-LNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQ--NLLLWLCRYKHVEVAET 244 (536)
Q Consensus 169 ~g~~~~A~~~~~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~~~~~~a~~ 244 (536)
.|+++.|++.+..... ..+...+-.+ ..+..+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 5888888887777652 2222233233 33446778888888888888764 34443222 33556777888888888
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHhHHHHHHHH
Q 048749 245 FFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDS-------VTYATFVNALTKKGKLGTALRLFQA 317 (536)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~ 317 (536)
.++.+....+.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 888876665667778888888888888888888888888776643222 1233333333334444555555555
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 048749 318 MWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLP 397 (536)
Q Consensus 318 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p 397 (536)
+.+. .+.++.....+...+...|+.++|.+++++..+. .++.... ++.+....++.+++.+..+...+..
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~----- 324 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH----- 324 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-----
Confidence 4332 3346666777777777778888887777777664 3343211 2333344577777777777776654
Q ss_pred cHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 398 NEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLY 477 (536)
Q Consensus 398 ~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 477 (536)
+-|...+..+...|.+.|++++|.+.|+...+. .|+..++..+...+.
T Consensus 325 ------------------------------P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~ 372 (398)
T PRK10747 325 ------------------------------GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALD 372 (398)
T ss_pred ------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHH
Confidence 336777888889999999999999999998876 688888888889999
Q ss_pred hcCCHHHHHHHHHHHHH
Q 048749 478 DKGRLEDALSYFHEMRL 494 (536)
Q Consensus 478 ~~g~~~~A~~~~~~m~~ 494 (536)
+.|+.++|.+++++-..
T Consensus 373 ~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 373 RLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 99999999998887654
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=4.6e-11 Score=118.82 Aligned_cols=393 Identities=12% Similarity=0.058 Sum_probs=281.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
+|+.+.|.+++..++++. +.+...|..|..+|-+.|+.+++...+-... .+.|..-|-.+.....+.|++++|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 479999999999999885 6678889999999999999999887766555 677888899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIK-----TMNIILNGWCVLGNVYEAKRFWKDIIK 285 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~ 285 (536)
|.+.++.. +++...+-.-...|-+.|+...|..-|.++-.-.+|... .--.+++.+...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99988876 555555556677788889998888888886544343222 223345556667777888888877765
Q ss_pred CC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-----------------------------------------
Q 048749 286 SK-CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGR----------------------------------------- 323 (536)
Q Consensus 286 ~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----------------------------------------- 323 (536)
.+ -..+...++.++..+.+...++.|......+.....
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 21 233445666777777777777777766666655110
Q ss_pred ----------------------CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 324 ----------------------KPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381 (536)
Q Consensus 324 ----------------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A 381 (536)
.-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 0122345667788999999999999999998775555788999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 048749 382 YEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERME--------RNGCKMSTDTYNVILKLYVNWDCEDKVRHT 453 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 453 (536)
.+.|.......+...-..++..++....++.++|.+.++.+. ..+..|+........+.+.+.|+.++-..+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999998764333445778888888899999988888743 234556666656666677777776654433
Q ss_pred HHHHHHCC--------------------------------------------------CCC-----------CH----HH
Q 048749 454 WEEMEKKG--------------------------------------------------MGP-----------DQ----RS 468 (536)
Q Consensus 454 ~~~m~~~g--------------------------------------------------~~p-----------~~----~~ 468 (536)
-..|...+ ..+ +. ..
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 33222110 000 01 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCcHH----HHHHHHHHHHhhhhhhhhhHHHHHhh
Q 048749 469 YTVMIHGLYDKGRLEDALSYFHEMRLKGM-VPEPR----TGILVNDMNIKLKERGEQGKKVIKLT 528 (536)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~l~~~~~~~~~~~~a~~~~~~~~ 528 (536)
+..++.++++.|++++|+.+...+..... .-++. .-.+.+.+++..+++..+...++.|.
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34566778888999999999888887642 22332 14566777778888888888887763
No 30
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=6.9e-12 Score=123.19 Aligned_cols=62 Identities=6% Similarity=0.014 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 432 DTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55667777778888888888888753333336777777777778888888888888777653
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=3.3e-14 Score=132.60 Aligned_cols=252 Identities=16% Similarity=0.128 Sum_probs=92.9
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 132 YRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIG 209 (536)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (536)
..++++.|++++........-+.|...|..+.......++++.|++.++++. ...+...+..++.. ...+++++|.+
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~ 98 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALK 98 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 3467788888775433221013355556666666667777888888887777 33445556666666 67777888877
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 210 VFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEK--NEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK 287 (536)
Q Consensus 210 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 287 (536)
++.+..+.. ++...+..++..+.+.++++.+..+++.+. ...+.+...|..+...+.+.|+.++|++.+++..+..
T Consensus 99 ~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~ 176 (280)
T PF13429_consen 99 LAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD 176 (280)
T ss_dssp ---------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred ccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 776655432 455566667777777788888777777742 2335667777777777778888888888887777664
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048749 288 CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNS 367 (536)
Q Consensus 288 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 367 (536)
+-|......++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|+..|++..+... .|......
T Consensus 177 -P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~d~~~~~~ 253 (280)
T PF13429_consen 177 -PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-DDPLWLLA 253 (280)
T ss_dssp -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T-HHHHHH
T ss_pred -CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-cccccccc
Confidence 3346667777777777787777777777766653 44556667777777788888888888887766422 26666677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 048749 368 LIKHLCKIKRMETVYEYLDEME 389 (536)
Q Consensus 368 li~~~~~~~~~~~A~~~~~~m~ 389 (536)
+..++...|+.++|.++..+..
T Consensus 254 ~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 254 YADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHT----------------
T ss_pred cccccccccccccccccccccc
Confidence 7777777888888877776653
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=2.8e-11 Score=118.92 Aligned_cols=290 Identities=11% Similarity=0.004 Sum_probs=191.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 048749 200 AAHMVEEAIGVFDRRKEFGELDD-LSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYD-IKTMNIILNGWCVLGNVYEAK 277 (536)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~ 277 (536)
..|+++.|.+.+.+..+.. |+ ...+-....+..+.|+.+.|.+.+....+..+.+ ....-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4577777777776665543 33 2333344556667777777777777753332222 223333466677788888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHH---HhcCChHHHHHHHHHHH
Q 048749 278 RFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDAL---CFKKRIPEALEVLREMK 354 (536)
Q Consensus 278 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m~ 354 (536)
..++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+..++......-..++ ...+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888887765 4456677777888888888888888888888776543222211111211 22233333344555554
Q ss_pred HCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCH
Q 048749 355 NRGC---LPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMST 431 (536)
Q Consensus 355 ~~g~---~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~ 431 (536)
+... +.+...+..+...+...|+.++|.+++++..+.. ||... .
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----pd~~~-----------------------------~ 299 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----GDDRA-----------------------------I 299 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC----CCccc-----------------------------c
Confidence 4321 1277888889999999999999999999998865 33210 0
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHH
Q 048749 432 DTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQ---RSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVN 508 (536)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~ 508 (536)
.............++.+.+.+.++...+. .|+. ....++...|.+.|++++|.++|+........||+.++..+.
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 00111111222345667788888877765 3443 456688899999999999999999655555689999999999
Q ss_pred HHHHhhhhhhhhhHHHHHh
Q 048749 509 DMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 509 ~~~~~~~~~~~a~~~~~~~ 527 (536)
..+.+.|+.++|.+.+++-
T Consensus 378 ~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999884
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=3.2e-11 Score=117.82 Aligned_cols=250 Identities=9% Similarity=0.016 Sum_probs=168.2
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 048749 131 RYRFDWEAAYTFFKWVSREGDYSPGSNVF--NAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEE 206 (536)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~ 206 (536)
...|+++.|.+.+..+.+. .|+.... ......+...|++++|...++++. .+.+...+..+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 3456788888888877664 2443322 233567777888888888887776 55667777778888888888888
Q ss_pred HHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 207 AIGVFDRRKEFGELDDL-------SAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRF 279 (536)
Q Consensus 207 A~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 279 (536)
|.+++..+.+.+..++. .+|..++.......+.+...++++.+....+.+......+...+...|+.++|.++
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888776644322 12333343334445556666666666555566777777788888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 048749 280 WKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCL 359 (536)
Q Consensus 280 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 359 (536)
+++..+. ++|... .++.+....++.+++++..+...+. .+-|...+..+...|.+.|++++|.+.|+.+.+. .
T Consensus 286 L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~ 358 (398)
T PRK10747 286 ILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--R 358 (398)
T ss_pred HHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 8777663 344421 1233334557777888877777765 2335556777777788888888888888877765 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 360 PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 360 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
|+..+|..+...+.+.|+.++|.+++++...
T Consensus 359 P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 359 PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777777888888888888887776543
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=4.4e-14 Score=131.76 Aligned_cols=258 Identities=14% Similarity=0.112 Sum_probs=101.1
Q ss_pred HHHHHHHccCCHHHHHHHHHhC-C-C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048749 161 AILDVLGRARRFVELIQVFDEM-P-D--LVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRY 236 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~~-~-~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 236 (536)
.+..++.+.|++++|++++++. . . +.+...|..+.......++++.|++.|+++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 5678888899999999999553 3 2 3455666777777778888999999999988766 3356667677766 688
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 048749 237 KHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK-CEPDSVTYATFVNALTKKGKLGTALRLF 315 (536)
Q Consensus 237 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~ 315 (536)
+++++|..+++..-+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.+
T Consensus 91 ~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888887764222 2466667778888888888888888888876543 3456777888888888888888888888
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048749 316 QAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSC 395 (536)
Q Consensus 316 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 395 (536)
++..+.. +.|......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.+|++..+..
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--- 244 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN--- 244 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS---
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc---
Confidence 8888852 2246677788888888888888888887776543 3355567788888888888888888888887755
Q ss_pred CCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 048749 396 LPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEME 458 (536)
Q Consensus 396 ~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 458 (536)
+.|......+.+++...|+.++|.++.++..
T Consensus 245 --------------------------------p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 --------------------------------PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp --------------------------------TT-HHHHHHHHHHHT----------------
T ss_pred --------------------------------ccccccccccccccccccccccccccccccc
Confidence 2356666677777777777777777766544
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=6.4e-11 Score=104.36 Aligned_cols=298 Identities=15% Similarity=0.117 Sum_probs=203.9
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHhhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHH
Q 048749 90 IAINVQNILKTCSVSTKGEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPG--SNVFNAILDVLG 167 (536)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~ 167 (536)
-+..++-++..........+.++++..+..+...+.++-|.+.+|..+.|+++++-+.+.+++.-+ ..+.-.|..-|.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym 118 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYM 118 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 455666677666655556677777777777777888888888888999999999998877644333 234556667788
Q ss_pred ccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHH
Q 048749 168 RARRFVELIQVFDEMPD--LVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDL----SAFQNLLLWLCRYKHVEV 241 (536)
Q Consensus 168 ~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~ 241 (536)
..|-++.|+++|..+.+ ..-......|+..|-...+|++|+++-+++.+.|-.+.. ..|.-|...+....+++.
T Consensus 119 ~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~ 198 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR 198 (389)
T ss_pred HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence 88999999999988872 344567888889999999999999998888877644442 244555555566677888
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 048749 242 AETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK 321 (536)
Q Consensus 242 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (536)
|..++.+....-+..+.+-..+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+.
T Consensus 199 A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 199 ARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 88888775433344555566667777888888888888888877654444556677778888888888888888887775
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhc
Q 048749 322 GRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCK---IKRMETVYEYLDEMEQK 391 (536)
Q Consensus 322 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~ 391 (536)
...++ .-..+...-....-.+.|..++.+-..+ +|+...+..+|..-.. -|...+-+.+++.|...
T Consensus 279 ~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 279 NTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33322 3333333333344455555555544443 5788888888875543 23455566666666544
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.53 E-value=2.3e-10 Score=113.96 Aligned_cols=362 Identities=14% Similarity=0.093 Sum_probs=234.7
Q ss_pred HHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048749 161 AILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKH 238 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 238 (536)
...+.+.-.|++++|.+++.++. .+.....|-+|...|-+.|+.++++..+-..-... +.|...|..+.....+.|.
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 33344444599999999999987 77888899999999999999999988775544433 5667888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHhHHHHH
Q 048749 239 VEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTY----ATFVNALTKKGKLGTALRL 314 (536)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~----~~li~~~~~~g~~~~a~~~ 314 (536)
++.|.-+|.+..+.-+++....---+..|-+.|+...|..-|.++.....+.|..-+ -.++..+...++-+.|++.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999965555778777777788888999999999999999876533333222 2345566677777888888
Q ss_pred HHHHHHc-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--------------------------HH
Q 048749 315 FQAMWEK-GRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTY--------------------------NS 367 (536)
Q Consensus 315 ~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------------------------~~ 367 (536)
++..... +-..+...++.++..|.+...++.|......+......+|..-| --
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 8887763 22335556788888899999999998888877663222322221 01
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048749 368 LIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNW 444 (536)
Q Consensus 368 li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 444 (536)
++-++...+..+....+.....+....+.-+...|.-+..++ ++..+|..++..+.....--+...|--+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 222333344444444444444444411122233344444555 34455556666666544444566777777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCCcHHHHHHHHHHHHhhh
Q 048749 445 DCEDKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMR--------LKGMVPEPRTGILVNDMNIKLK 515 (536)
Q Consensus 445 g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~l~~~~~~~~ 515 (536)
|.++.|.+.++..... .|+ ...-..|-..+.+.|+.++|.+.+..|. ..+..|+..........+...|
T Consensus 463 ~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred hhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 7777777777777664 333 2333445555667777777777776643 2234455555555555555666
Q ss_pred hhhhhhHHHH
Q 048749 516 ERGEQGKKVI 525 (536)
Q Consensus 516 ~~~~a~~~~~ 525 (536)
+.++-.....
T Consensus 541 k~E~fi~t~~ 550 (895)
T KOG2076|consen 541 KREEFINTAS 550 (895)
T ss_pred hHHHHHHHHH
Confidence 6554443333
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.51 E-value=1.6e-12 Score=128.42 Aligned_cols=274 Identities=15% Similarity=0.127 Sum_probs=203.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 209 GVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEK-NEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK 287 (536)
Q Consensus 209 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 287 (536)
.++..+...|+.|+.+||..+|.-||..|+.+.|- +|..|+ +..+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46677889999999999999999999999999998 888874 446778899999999999999988776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCHHHHH
Q 048749 288 CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMK-NRGCLPNVTTYN 366 (536)
Q Consensus 288 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~ 366 (536)
.|...||..|..+|...||+.. |+...+ -.-.++..+...|.-..-..++..+. ..+.-||...
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n-- 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN-- 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH--
Confidence 6788899999999999999876 322222 22334555666776666666665543 2233445433
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCC-ChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048749 367 SLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKP-EEVPWVLERMERNGCKMSTDTYNVILKLYVNWD 445 (536)
Q Consensus 367 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 445 (536)
.+....-.|.++.+.+++..+..... ..|..+ +|.-+... ...+++........-.|+..+|..++..-.-.|
T Consensus 145 -~illlv~eglwaqllkll~~~Pvsa~-~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 -AILLLVLEGLWAQLLKLLAKVPVSAW-NAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAG 218 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHhhCCcccc-cchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcC
Confidence 34445556778888888877654432 122222 35555433 445555555444222689999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhh
Q 048749 446 CEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKER 517 (536)
Q Consensus 446 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~ 517 (536)
+++.|..++.+|.+.|++.+...|..|+-+ .|+...+..+++-|.+.|+.|+..|+.-...-+.+.|..
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 999999999999999999998888888766 788888899999999999999999977777666665554
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=6.8e-10 Score=102.58 Aligned_cols=95 Identities=9% Similarity=0.143 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCc--HHH
Q 048749 430 STDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK----GMVPE--PRT 503 (536)
Q Consensus 430 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t 503 (536)
|...|.+|..+|.+.++.++|++.|......|- .+...+..|...|-+.++.++|..+|++.++. |..-+ ...
T Consensus 431 DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka 509 (559)
T KOG1155|consen 431 DSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKA 509 (559)
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence 566777777777777777777777776666542 24466666677777777777777666665542 22211 122
Q ss_pred HHHHHHHHHhhhhhhhhhHHHH
Q 048749 504 GILVNDMNIKLKERGEQGKKVI 525 (536)
Q Consensus 504 ~~~l~~~~~~~~~~~~a~~~~~ 525 (536)
..-|...+.+.+++++|.....
T Consensus 510 ~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 510 RLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHhhcchHHHHHHHH
Confidence 3345555566666665555443
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=1.2e-09 Score=99.41 Aligned_cols=288 Identities=11% Similarity=0.056 Sum_probs=158.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 202 HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNE-FGYDIKTMNIILNGWCVLGNVYEAKRFW 280 (536)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 280 (536)
|++.+|+++..+-.+.+ +.....|..-..+.-..|+.+.+-.++.+..+. -.++....-.........|+++.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44555555444444433 222223333344444445555555555443221 1233334444444444555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH-------hhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 281 KDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV-------VTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 281 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
+++.+.+ +.+.........+|.+.|++.....++..|.+.|.-.|. .+|..+++-....+..+.-..-++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 5554444 233444455555555555555555555555555443332 24555555444444444434444443
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHH--CCCCCCH
Q 048749 354 KNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMER--NGCKMST 431 (536)
Q Consensus 354 ~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~--~~~~~~~ 431 (536)
... .+-++..-.+++.-+.++|+.++|.++..+..+++ ..|. ... +-.+-+.++.....+.+.+ ...+-++
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~--~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ--WDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc--cChh---HHH-HHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 221 12244455555666666666666666666666655 3333 111 1122223333322222222 1123345
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 048749 432 DTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPE 500 (536)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 500 (536)
..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+.+..++.+.|+.++|.++.++-...-..|+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 78899999999999999999999977765 79999999999999999999999999998775444443
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=9.5e-12 Score=119.86 Aligned_cols=273 Identities=13% Similarity=0.094 Sum_probs=157.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 203 MVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNE---FGYDIKTMNIILNGWCVLGNVYEAKRF 279 (536)
Q Consensus 203 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~ 279 (536)
+..+|+..|.+..+ .+.....+...+..+|...+++++|+.+|+.++.. ...+...|.+.+--+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 46677777877443 33444456666777888888888888888876432 123556666665433221 11111
Q ss_pred -HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 280 -WKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP-DVVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 280 -~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
-+++.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+. .| ..++|+.+-.-+.....+|.|...|+.....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~- 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV- 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-
Confidence 12222222 345678888888888888888888888887774 34 5677777777777777888888888877653
Q ss_pred CCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHH----HHHHHHHhcCCCChHHHHHHHHHHCCCCCC
Q 048749 358 CLPNVTTYN---SLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEI----TFNYLLKSLKKPEEVPWVLERMERNGCKMS 430 (536)
Q Consensus 358 ~~p~~~~~~---~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~----~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~ 430 (536)
|...|| -|...|.+.++++.|.-.|+++.+.+ |... .+..+...+++.++|..++++......+ |
T Consensus 485 ---~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN----P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n 556 (638)
T KOG1126|consen 485 ---DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN----PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-N 556 (638)
T ss_pred ---CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC----ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-C
Confidence 444444 45567778888888888888887755 3211 1122223334444444444444433222 2
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 431 TDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 431 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
.-.--.-+..+...+++++|+..++++++. .|+ ...+..+...|.+.|+.+.|+.-|--|.+
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 222222233344455556666666665554 333 23344444555555666655555555544
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=1.4e-10 Score=106.58 Aligned_cols=245 Identities=12% Similarity=0.119 Sum_probs=167.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------------------------------HHhcCCHh
Q 048749 266 GWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNA------------------------------------LTKKGKLG 309 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~------------------------------------~~~~g~~~ 309 (536)
.|.+.|+++.|.++++-+.+..-+.-...-+.|... ...+|+++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence 466899999999999877654322111111111100 11246788
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 310 TALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEME 389 (536)
Q Consensus 310 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 389 (536)
+|.+.|++.....-.-....||.= -.+-..|++++|++.|-++... +.-++.+...+...|-...+...|++++.+..
T Consensus 508 ka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 888888887775332222233322 2355778888888888776432 11266777777888888888888888887765
Q ss_pred hcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH
Q 048749 390 QKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMER--NGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQR 467 (536)
Q Consensus 390 ~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 467 (536)
.. ++.|.....-+-..|-+.++-.+.|..--+ .-++-|..+...|..-|....-.++++..|++..- +.|+..
T Consensus 586 sl---ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 586 SL---IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred cc---CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 53 334555566666666555544444443322 23466788888888888888889999999988765 489999
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhhh
Q 048749 468 SYTVMIHGLY-DKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERG 518 (536)
Q Consensus 468 ~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~ 518 (536)
-|..||..|. +.|++++|+++++....+ +.-|......|.+++...|..+
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 9999997665 679999999999998765 6667777899999988887654
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=2.4e-11 Score=117.17 Aligned_cols=283 Identities=12% Similarity=0.076 Sum_probs=190.3
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 171 RFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFG--ELDDLSAFQNLLLWLCRYKHVEVAETFF 246 (536)
Q Consensus 171 ~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 246 (536)
+..+|...|++++ ..-+..+...+.++|...+++++|.++|+...+.. ..-+...|.+.+--+-+. .++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 4567777777755 33344556667777888888888888887776543 123456666665433221 122222
Q ss_pred HH-hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 048749 247 ES-EKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP 325 (536)
Q Consensus 247 ~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 325 (536)
.+ +....+..+.+|-++..+|.-.++.+.|++.|+..+..+ +-...+|+.+..-+....++|.|...|+..+..
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~---- 484 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV---- 484 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----
Confidence 22 222334567788888888888888888888888777654 235677777777777788888888888776553
Q ss_pred CHhhHH---HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHH
Q 048749 326 DVVTCN---CIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITF 402 (536)
Q Consensus 326 ~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~ 402 (536)
|+..|+ .+...|.|.++++.|+-.|+++.+-+.. +.+....+...+.+.|+.|+|+++++++...+++-....+--
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 444444 4455677888888888888877766543 556666667777778888888888888777653222223334
Q ss_pred HHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 048749 403 NYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGP 464 (536)
Q Consensus 403 ~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 464 (536)
..++-...+.++|...++++++.- +-+...|..+...|-+.|+.+.|+.-|.-+.+.+.++
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 455666677778887777777742 4467788889999999999999999998888764433
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=3.2e-10 Score=100.05 Aligned_cols=219 Identities=16% Similarity=0.095 Sum_probs=145.3
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHHH
Q 048749 170 RRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD------LSAFQNLLLWLCRYKHVEV 241 (536)
Q Consensus 170 g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~ll~~~~~~~~~~~ 241 (536)
.+.++|.++|-+|. ++.+..+--+|.+.|-+.|..+.|+.+.+.+.+. || ..+.-.|..-|...|-+|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 45566666666665 3333344455666666666666666666666552 33 1233345555677777788
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHH
Q 048749 242 AETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDS----VTYATFVNALTKKGKLGTALRLFQA 317 (536)
Q Consensus 242 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~ 317 (536)
|+.+|..+...-.--......|+..|-...+|++|+++-+++.+.+-.+.. .-|.-+...+....+.+.|..++.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888877765432334556677788888888888888888877776533332 2345555556667778888888888
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 318 MWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 318 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
..+...+ .+..--.+.+.....|+++.|++.++...+.+..--..+...|..+|...|+.++....+..+.+..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7775322 3333345566777888888888888888877544446677788888888888888888888887765
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=9.8e-09 Score=95.29 Aligned_cols=385 Identities=12% Similarity=0.055 Sum_probs=249.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVN-EKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
.++...|..+|+.+..-. ..+...|-..+.+-.++.++..|..+|++.. ..|. ...|-.-+-.=-..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 356777888888877654 3456677777777778888888888887766 2232 23455555555566777888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS-KC- 288 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~- 288 (536)
|++-.+. .|+..+|.+.++.-.+.+..+.|..++++..- +.|++..|......-.++|++..|..+|+..++. |-
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 8776653 57777888877777777777888887777432 2477777777777667777777777777766542 10
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc------------------------C-------------------CCC
Q 048749 289 EPDSVTYATFVNALTKKGKLGTALRLFQAMWEK------------------------G-------------------RKP 325 (536)
Q Consensus 289 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------------------g-------------------~~p 325 (536)
..+...+.+...-=.+...++.|.-+|+-.++. | -+-
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 111222222222222333444444444433322 0 112
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHH-----HHH---HhcCCHHHHHHHHHHHHhcCCCC
Q 048749 326 DVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNV--TTYNSLI-----KHL---CKIKRMETVYEYLDEMEQKNGSC 395 (536)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li-----~~~---~~~~~~~~A~~~~~~m~~~~~~~ 395 (536)
|-.+|--.+..-...|+.+...++|+..... ++|-. ..|.--| -++ ....+.+.+.++|+...+. +
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l---I 396 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL---I 396 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---c
Confidence 3334555555566678888888888887754 33321 1111111 111 2467788888888887773 4
Q ss_pred CCcHHHHHHHHHhc-------CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHH
Q 048749 396 LPNEITFNYLLKSL-------KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRS 468 (536)
Q Consensus 396 ~p~~~~~~~ll~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 468 (536)
+...+||.-+--.+ .+...|.+++... .|..|-..+|...|..-.+.+++|.+..++++..+.+ +-|..+
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A--IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~ 473 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA--IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYA 473 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH--hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHH
Confidence 44556666543333 3344555555543 4668888999999999999999999999999999875 236678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCcHHHHHHHHHHHHhhhhhhhhhHHHHHhhh
Q 048749 469 YTVMIHGLYDKGRLEDALSYFHEMRLKGM-VPEPRTGILVNDMNIKLKERGEQGKKVIKLTS 529 (536)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~ 529 (536)
|......--..|+.+.|..+|+-.+.+.. ......+...++.-...|+.+.+..++.+++.
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 88877777788999999999999887643 22233467777777888899999888888754
No 45
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.44 E-value=3.4e-09 Score=106.60 Aligned_cols=380 Identities=11% Similarity=0.058 Sum_probs=256.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-----DLVNEKTYGILLNRYAAAHMVEEAIG 209 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (536)
+++.|.+.|..+.++. ++|.-.+---..+....|++..|+.+|.... ..+|+ .-.+..++.+.|+.+.|+.
T Consensus 145 ~~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALL 220 (1018)
T ss_pred cHHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHH
Confidence 4689999999998875 4555444444444556889999999999855 22332 2223356678899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 210 VFDRRKEFGELDDLSAFQNLLLWLCRY---KHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 210 ~~~~m~~~g~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
.|.+..+.. +.++.++..|...-... ..+..+...+...-..-+.++++.+.|...|.-.|+++.++.+...+...
T Consensus 221 a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 221 AFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 999999865 23333443333222222 33556677776654444668889999999999999999999999988764
Q ss_pred CCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 048749 287 KCE--PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV--VTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNV 362 (536)
Q Consensus 287 g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 362 (536)
... .-...|-.+.++|-..|++++|..+|.+..+. .+|. ..+-.+...|.+.|+++.+...|+...+... -+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~ 376 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNY 376 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chH
Confidence 311 12345888999999999999999999887774 3443 3455678899999999999999999977632 256
Q ss_pred HHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc--CCCChHH----HHHHHHHHCCCCCCHH
Q 048749 363 TTYNSLIKHLCKIK----RMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL--KKPEEVP----WVLERMERNGCKMSTD 432 (536)
Q Consensus 363 ~~~~~li~~~~~~~----~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~--~~~~~a~----~~~~~~~~~~~~~~~~ 432 (536)
.+...|...|...+ ..++|..++.+..+.. ..|...|-.+-..+ .+..... .+.+.+...+-.+...
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~---~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT---PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 66666666676654 5677888887776653 34555665555554 2332333 3344555566667889
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHC---CCCCCHH-----HHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 048749 433 TYNVILKLYVNWDCEDKVRHTWEEMEKK---GMGPDQR-----SYT-VMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRT 503 (536)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~-----~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 503 (536)
..|.+...+...|++.+|...|+..... ...+|.. |.. .+...+-..++++.|.+.|...++. .|.-++
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId 531 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYID 531 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHH
Confidence 9999999999999999999999987754 2233331 111 2333344456778888888887764 455555
Q ss_pred -HHHHHHHHHhhhhhhhhhHHHHHh
Q 048749 504 -GILVNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 504 -~~~l~~~~~~~~~~~~a~~~~~~~ 527 (536)
|..+..+....+...+|...+.+.
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~ 556 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDA 556 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHH
Confidence 444444444445555666666653
No 46
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.42 E-value=7.8e-09 Score=99.66 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=81.5
Q ss_pred CCCHHH--HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHH
Q 048749 428 KMSTDT--YNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQR-SYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTG 504 (536)
Q Consensus 428 ~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 504 (536)
+|.... +-.++..|-+.|+++.|...++..... .|+.+ .|-.=.+.+...|++++|..++++..+.. .||...-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHH
Confidence 455444 445778889999999999999998876 56643 34444577888999999999999998763 4677776
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHhhhccC
Q 048749 505 ILVNDMNIKLKERGEQGKKVIKLTSLGL 532 (536)
Q Consensus 505 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 532 (536)
.--.....+.++.++|.+.+.++++.|.
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 6788888999999999999999998875
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.42 E-value=5.4e-08 Score=93.99 Aligned_cols=381 Identities=12% Similarity=0.079 Sum_probs=208.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-------DLVNEKTYGILLNRYAAAHMVEEA 207 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A 207 (536)
.++.|..+++.+.+. ++.+...|-+-...--.+|+.+...+++++-. ...+...|-.=...|-..|.+-.+
T Consensus 421 tYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~Tc 498 (913)
T KOG0495|consen 421 TYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITC 498 (913)
T ss_pred HHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhH
Confidence 556666666666554 45566666665555556666666655555432 223334444444444444444444
Q ss_pred HHHHHHHHHcCCC------------------------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048749 208 IGVFDRRKEFGEL------------------------------------DDLSAFQNLLLWLCRYKHVEVAETFFESEKN 251 (536)
Q Consensus 208 ~~~~~~m~~~g~~------------------------------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 251 (536)
..+....+..|+. -+...|......--..|..+....+|++...
T Consensus 499 QAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~ 578 (913)
T KOG0495|consen 499 QAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE 578 (913)
T ss_pred HHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4444444444432 2333343443333444445555555555444
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHH
Q 048749 252 EFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCN 331 (536)
Q Consensus 252 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 331 (536)
.++.....|-....-+-..|++..|..++.+..+.. +-+...|-.-+.....+.+++.|..+|.+... ..|+..+|.
T Consensus 579 ~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~m 655 (913)
T KOG0495|consen 579 QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWM 655 (913)
T ss_pred hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhH
Confidence 444444455555555555555555555555555443 22444555555555555555555555555444 234444444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc-
Q 048749 332 CIIDALCFKKRIPEALEVLREMKNRGCLPN-VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL- 409 (536)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~- 409 (536)
--+..---.++.++|.+++++..+. -|+ ...|-.+.+.+-+.++.+.|.+.|..-.+. -|+..-.-.++.-+
T Consensus 656 Ks~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~----cP~~ipLWllLakle 729 (913)
T KOG0495|consen 656 KSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK----CPNSIPLWLLLAKLE 729 (913)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc----CCCCchHHHHHHHHH
Confidence 4444444445555555555555443 233 233444444555555555555555544332 23333333333322
Q ss_pred ---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC----C---------------------
Q 048749 410 ---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK----G--------------------- 461 (536)
Q Consensus 410 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g--------------------- 461 (536)
+..-.|..+++.-.-.+ +-+...|...|++-.+.|+.+.|..+..+..+. |
T Consensus 730 Ek~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred HHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH
Confidence 33445666676665544 457888999999999999999888877655432 1
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhhhhhhhhhHHHHHhhh
Q 048749 462 ----MGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPE-PRTGILVNDMNIKLKERGEQGKKVIKLTS 529 (536)
Q Consensus 462 ----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~~~~~~a~~~~~~~~~ 529 (536)
+.-|....-.+...+....++++|.+.|.+.++. .|| ..++..+......+|..++..+++.+..+
T Consensus 809 ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 809 ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 2234455555566666777888888888888764 344 44577788888888877777777766543
No 48
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=2.3e-10 Score=116.78 Aligned_cols=265 Identities=9% Similarity=0.027 Sum_probs=144.8
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHhc
Q 048749 185 LVNEKTYGILLNRYAA-----AHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLC---------RYKHVEVAETFFESEK 250 (536)
Q Consensus 185 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~ 250 (536)
..+...|...+++... .+..++|+++|++..+.. +.+...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3444555555554321 134677777777776643 223444544443332 1233667777777754
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-Hhh
Q 048749 251 NEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPD-VVT 329 (536)
Q Consensus 251 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~ 329 (536)
..-+.+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.. |+ ...
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~ 408 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAA 408 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhh
Confidence 4445566677777777777777777777777776664 3345566666777777777777777777776642 32 222
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHH-Hh
Q 048749 330 CNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLL-KS 408 (536)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll-~~ 408 (536)
+..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...+.++.... |+..+....+ ..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~----~~~~~~~~~l~~~ 484 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE----ITGLIAVNLLYAE 484 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc----chhHHHHHHHHHH
Confidence 223333455567777777777776544222234445556666677777777777777665432 3433333322 22
Q ss_pred c-CCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 048749 409 L-KKPEEVPWVLERMER-NGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK 460 (536)
Q Consensus 409 ~-~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 460 (536)
+ ...+.+...++.+.+ ....+....+ +-..|.-.|+-+.+... +++.+.
T Consensus 485 ~~~~g~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 485 YCQNSERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhccHHHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2 222344444444443 1112221222 23334445555555544 666654
No 49
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=4.4e-09 Score=96.90 Aligned_cols=353 Identities=13% Similarity=0.098 Sum_probs=228.5
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREG-DYSPG--SNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHMVEEAI 208 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~ 208 (536)
.+++..|+++++.+..+- .+..+ ....+.+.-.+.+.|++++|+.-|+... ..|+-.+--.|+-++..-|+-++..
T Consensus 250 kr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmk 329 (840)
T KOG2003|consen 250 KREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMK 329 (840)
T ss_pred hhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHH
Confidence 367888888888777663 11111 2334444455667778888877777655 4455544333344444556777777
Q ss_pred HHHHHHHHcCC------------CCCHHHHHHHH----------------------------------------------
Q 048749 209 GVFDRRKEFGE------------LDDLSAFQNLL---------------------------------------------- 230 (536)
Q Consensus 209 ~~~~~m~~~g~------------~~~~~~~~~ll---------------------------------------------- 230 (536)
+.|.+|+..-. .|+....+..+
T Consensus 330 eaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~l 409 (840)
T KOG2003|consen 330 EAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESL 409 (840)
T ss_pred HHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHH
Confidence 77777653211 12222222111
Q ss_pred -----------------HHHHhcCCHHHHHHHHHHhcCCC-C------CCHHH-------------------------HH
Q 048749 231 -----------------LWLCRYKHVEVAETFFESEKNEF-G------YDIKT-------------------------MN 261 (536)
Q Consensus 231 -----------------~~~~~~~~~~~a~~~~~~~~~~~-~------~~~~~-------------------------~~ 261 (536)
.-+.+.|+++.|.+++.-..+.- + .+... ||
T Consensus 410 k~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn 489 (840)
T KOG2003|consen 410 KASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYN 489 (840)
T ss_pred HHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccC
Confidence 11368899999988877643210 1 01111 11
Q ss_pred HHH-----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048749 262 IIL-----NGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDA 336 (536)
Q Consensus 262 ~li-----~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 336 (536)
.-. ......|++++|.+.+++.....-.-....|+. .-.+-..|++++|++.|-.+..- +..+..+...+...
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qiani 567 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANI 567 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHH
Confidence 100 011146889999999999886543222233332 33466789999999999877654 33477788888999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHH
Q 048749 337 LCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVP 416 (536)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~ 416 (536)
|-...+...|++++.+.... ++.|......|...|-+.|+-..|++.+-+--.- .+-+..|...+-.-|-...-.+
T Consensus 568 ye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry---fp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 568 YELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY---FPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc---cCcchHHHHHHHHHHHhhHHHH
Confidence 99999999999999877543 4457889999999999999999999987654443 3456666666665565544444
Q ss_pred HHHHHHHH-CCCCCCHHHHHHHHHHHH-ccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 417 WVLERMER-NGCKMSTDTYNVILKLYV-NWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 417 ~~~~~~~~-~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
+....+.+ .-+.|+..-|..++..|. +.|++.+|.++++...+. ++-|......|++.+...|- .++.++-+++.
T Consensus 644 kai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 644 KAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence 44444444 446899999998886665 689999999999999875 67788999999998888775 44555555443
No 50
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.38 E-value=9.6e-08 Score=92.32 Aligned_cols=344 Identities=12% Similarity=0.019 Sum_probs=208.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFD 212 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 212 (536)
+++.|+-++..+.+. ++.+...|. +|++..-++.|..++++.. .+.+...|.+-...--.+|+.+...++++
T Consensus 391 ~~~darilL~rAvec--cp~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 391 EPEDARILLERAVEC--CPQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred ChHHHHHHHHHHHHh--ccchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 667799999999886 355555554 5566778899999999988 67788899998888889999999999887
Q ss_pred H----HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 213 R----RKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESE-KNEF--GYDIKTMNIILNGWCVLGNVYEAKRFWKDIIK 285 (536)
Q Consensus 213 ~----m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 285 (536)
+ +...|+..+...|..=...|-..|..-.+..+...+ .-++ ..-..+|+.-...|.+.+.++-|..+|....+
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 6 446688888877777777777777666666665552 2121 22345666666677777777777777766654
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048749 286 SKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTY 365 (536)
Q Consensus 286 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 365 (536)
-- +-+...|......--..|..+....++++.... ++-....|.....-+-..|+...|..++....+.... +...|
T Consensus 545 vf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiw 621 (913)
T KOG0495|consen 545 VF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIW 621 (913)
T ss_pred hc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHH
Confidence 32 334455555555555566666666666666654 3333444544555555566666666666666555333 45566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHH---HHHHHhcCCCChHHHHHHHHHHC-----------------
Q 048749 366 NSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITF---NYLLKSLKKPEEVPWVLERMERN----------------- 425 (536)
Q Consensus 366 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~---~~ll~~~~~~~~a~~~~~~~~~~----------------- 425 (536)
-+-+..-....+++.|..+|.+....+ |+...| ..+...+...++|.+++++..+.
T Consensus 622 laavKle~en~e~eraR~llakar~~s----gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSIS----GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhccC----CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH
Confidence 666666666666666666666665544 233222 22233334444444444333321
Q ss_pred ----------------CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 426 ----------------GCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYF 489 (536)
Q Consensus 426 ----------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 489 (536)
.++-..-.|..|.+.--+.|.+-+|..+++...-.+ +-+...|-..|..-.+.|+.+.|..+.
T Consensus 698 ~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 122233344444455555556666666666555443 224555666666666666666665554
Q ss_pred HHH
Q 048749 490 HEM 492 (536)
Q Consensus 490 ~~m 492 (536)
.+.
T Consensus 777 akA 779 (913)
T KOG0495|consen 777 AKA 779 (913)
T ss_pred HHH
Confidence 443
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=7.6e-10 Score=100.31 Aligned_cols=198 Identities=14% Similarity=0.088 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV 269 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 269 (536)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|.+.+++.....+.+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 44444455555555555555555544432 22344444455555555555555555555332223344455555555556
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 048749 270 LGNVYEAKRFWKDIIKSKC-EPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALE 348 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 348 (536)
.|++++|.+.+++..+... ......+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|..
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666665554321 1123344555556666666666666666665542 1234455556666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 349 VLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 349 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
.+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 191 YLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66666554 223445555555666666666666666655543
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.37 E-value=7e-09 Score=94.56 Aligned_cols=292 Identities=11% Similarity=0.017 Sum_probs=226.6
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 048749 235 RYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRL 314 (536)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 314 (536)
-.|++..|++...+-.+.-+.....|..-.++.-+.|+.+.|-+++.+..+.--.++...+-+........|+++.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 36899999999988655445556667777788889999999999999998764466777788888889999999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 315 FQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNV-------TTYNSLIKHLCKIKRMETVYEYLDE 387 (536)
Q Consensus 315 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~~~~~~A~~~~~~ 387 (536)
+.++.+.+-. ++........+|.+.|++.....++..+.+.|.--+. .+|+.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 9999887543 6678889999999999999999999999998876554 3577777777666667776677777
Q ss_pred HHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH
Q 048749 388 MEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQR 467 (536)
Q Consensus 388 m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 467 (536)
...+-....+=..+|..-+--|+..++|.++.++..+.+..|+ -...-.+.+-++...-++..++-.+. .+-++.
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 6554321122234555556677888999999998888776666 23334566778888777777766554 123457
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHhhhccCCC
Q 048749 468 SYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIKLTSLGLKG 534 (536)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p 534 (536)
.+.+|-..|.+++.|.+|.+.|+..++ ..|+..++..+...+.+.|+..+|.+...+-...-..|
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 788999999999999999999997766 68999999999999999999999998888754333333
No 53
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.7e-09 Score=97.81 Aligned_cols=284 Identities=13% Similarity=0.082 Sum_probs=137.2
Q ss_pred HHHHHHccCCHHHHHHHHHhCC--CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhc
Q 048749 162 ILDVLGRARRFVELIQVFDEMP--DLVNEKTY-GILLNRYAAAHMVEEAIGVFDRRKEFGE--LDDLSAFQNLLLWLCRY 236 (536)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~ 236 (536)
+..++....+.+++..=.+... .-++..-+ +....+.-...++++|+.+|+++.+... -.|..+|..++-.--.+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 3344444445555555444443 11222222 2222333344566666666666665431 12445555554322221
Q ss_pred CCHH-HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 048749 237 KHVE-VAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLF 315 (536)
Q Consensus 237 ~~~~-~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 315 (536)
..+. .|..+++ + . +--+.|+..+.+-|.-.++.++|...|+...+.+ +.....|+.|..-|....+...|.+-|
T Consensus 313 skLs~LA~~v~~-i-d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-I-D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHHHHH-h-c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1111 1111111 1 1 1223344555555556666666666666665554 334455666666666666666666666
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048749 316 QAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSC 395 (536)
Q Consensus 316 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 395 (536)
+..++- .+.|-..|-.|..+|.-.+...-|+-+|++..+... -|...|.+|.++|.+.++.++|++.|+....-+.
T Consensus 388 RrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-- 463 (559)
T KOG1155|consen 388 RRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-- 463 (559)
T ss_pred HHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc--
Confidence 666554 233555566666666666666666666666555422 2556666666666666666666666666655541
Q ss_pred CCcHHHHHHHHHhc---CCCChHHHHHHHHH----HCCCCCC--HHHHHHHHHHHHccCChhHHHHHHH
Q 048749 396 LPNEITFNYLLKSL---KKPEEVPWVLERME----RNGCKMS--TDTYNVILKLYVNWDCEDKVRHTWE 455 (536)
Q Consensus 396 ~p~~~~~~~ll~~~---~~~~~a~~~~~~~~----~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~ 455 (536)
.+...+..+-..+ .+..+|...++... ..|...+ ...-.-|..-+.+.+++++|.....
T Consensus 464 -te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 464 -TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred -cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 1333344443333 22333333333222 2232222 1222234556667777777665443
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=6.6e-10 Score=100.74 Aligned_cols=198 Identities=11% Similarity=0.060 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
....+..+...+...|++++|.+.|++.. .+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 45677888888888999999999888776 55567788888888889999999999998888765 4556677788888
Q ss_pred HHhcCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 048749 233 LCRYKHVEVAETFFESEKNE--FGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGT 310 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 310 (536)
+...|++++|...++..... .+.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 88899999999998885332 23345567778888889999999999999888764 3356678888888999999999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 311 ALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 311 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999988876 344566677778888889999999988887754
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.36 E-value=4.9e-10 Score=114.40 Aligned_cols=248 Identities=12% Similarity=0.056 Sum_probs=128.6
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 048749 171 RFVELIQVFDEMP--DLVNEKTYGILLNRYAA---------AHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHV 239 (536)
Q Consensus 171 ~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 239 (536)
.+++|..+|++.. ++.+...|..+..++.. .+++++|...+++..+.+ +.+..++..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 4566666666655 33444455444443331 233566666666666554 34555566666666666666
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048749 240 EVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMW 319 (536)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 319 (536)
++|...|++.....+.+...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|...+++..
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 66666666644333445556666666666666666666666666655311 22222333334555666666666666665
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCc
Q 048749 320 EKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN-VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPN 398 (536)
Q Consensus 320 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~ 398 (536)
+...+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|...| ++|...++.+.+... ..+.
T Consensus 434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~-~~~~ 508 (553)
T PRK12370 434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ-RIDN 508 (553)
T ss_pred HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh-Hhhc
Confidence 5421213334555555666666777776666665443 122 333344444445444 355555555444322 2233
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHC
Q 048749 399 EITFNYLLKSLKKPEEVPWVLERMERN 425 (536)
Q Consensus 399 ~~~~~~ll~~~~~~~~a~~~~~~~~~~ 425 (536)
...+..++.++..-.+...+++.+.+.
T Consensus 509 ~~~~~~~~~~~~g~~~~~~~~~~~~~~ 535 (553)
T PRK12370 509 NPGLLPLVLVAHGEAIAEKMWNKFKNE 535 (553)
T ss_pred CchHHHHHHHHHhhhHHHHHHHHhhcc
Confidence 333344444443333333344555544
No 56
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=2.8e-08 Score=92.33 Aligned_cols=351 Identities=11% Similarity=0.086 Sum_probs=247.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHMVEEAIGVFD 212 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 212 (536)
|+...|.++|+.=.. ..|+..+|++.|+.-.+-+.++.|..++++.. ..|++.+|-.-.+.=.++|+...|..+|.
T Consensus 155 gNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 155 GNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred cccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 678888888876554 57888888888888888888888888888877 56888888888888888888888888888
Q ss_pred HHHHc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH--------H
Q 048749 213 RRKEF-GE-LDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYD--IKTMNIILNGWCVLGNVYEAKRF--------W 280 (536)
Q Consensus 213 ~m~~~-g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~ 280 (536)
...+. |- .-+...|++....-.++..++.|..+|.-....++.+ ...|......--+.|+....... +
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 76653 21 1112233333333445667778888877755555544 45565555555556665544433 3
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH-------hhHHHHHHHH---HhcCChHHHHHHH
Q 048749 281 KDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV-------VTCNCIIDAL---CFKKRIPEALEVL 350 (536)
Q Consensus 281 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~---~~~g~~~~A~~~~ 350 (536)
+.+++.+ +-|-.+|--.++.-...|+.+...++|+..+.. ++|-. ++|.-+=.++ ....+.+.+.++|
T Consensus 312 E~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 312 EKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4444444 567778888888888889999999999999886 55521 1222222222 2568899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHh---cCCCChHHHHHHHHH
Q 048749 351 REMKNRGCLPNVTTYNSLIKHL----CKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKS---LKKPEEVPWVLERME 423 (536)
Q Consensus 351 ~~m~~~g~~p~~~~~~~li~~~----~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~---~~~~~~a~~~~~~~~ 423 (536)
+...+. ++-...||..+=-.| .++.++..|.+++....-.- |-..+|...|.. +...+...++++...
T Consensus 390 q~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c----PK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 390 QACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC----PKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC----CchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 988873 333455555544334 46788999999998887543 666666655543 466677888999988
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 424 RNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKG-MGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 424 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
+.+ +-|..+|.-....-...|+.|.|..+|+...... +......|.+.|+--...|.+++|..+++++++.
T Consensus 465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 876 4577888888888888999999999999888752 2223456777777778899999999999999875
No 57
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=5.2e-09 Score=103.40 Aligned_cols=294 Identities=12% Similarity=0.115 Sum_probs=196.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHH
Q 048749 158 VFNAILDVLGRARRFVELIQVFDEMP-DLVNE-KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAF-QNLLLWLC 234 (536)
Q Consensus 158 ~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~ll~~~~ 234 (536)
..-....++...|++++|++.++.-. ..+|. .........+.+.|+.++|..+|..+++.+ |+...| ..+..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHh
Confidence 34445567788999999999998866 44554 456777888999999999999999999876 555544 44444442
Q ss_pred hc-----CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 235 RY-----KHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNV-YEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL 308 (536)
Q Consensus 235 ~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 308 (536)
-. ...+....+++.+....+- ......+.-.+..-..+ ..+..++..+...|+++ +|+.|-..|....+.
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~-s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPR-SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCcc-ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 22 2467778888887655432 22222222222222223 24556667777788654 566666666666666
Q ss_pred hHHHHHHHHHHHc----C----------CCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 048749 309 GTALRLFQAMWEK----G----------RKPDV--VTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN-VTTYNSLIKH 371 (536)
Q Consensus 309 ~~a~~~~~~m~~~----g----------~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~ 371 (536)
+-..+++...... + -.|.. .++.-+...|...|++++|++++++.++. .|+ +..|..-...
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kari 237 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 6666666665443 1 12333 24455677788899999999999988886 455 6677777888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHH
Q 048749 372 LCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVR 451 (536)
Q Consensus 372 ~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 451 (536)
+-+.|++++|.+.++.....+ .-|...-+-.+..+.++|++++|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-----------------------------------~~DRyiNsK~aKy~LRa~~~e~A~ 282 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-----------------------------------LADRYINSKCAKYLLRAGRIEEAE 282 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-----------------------------------hhhHHHHHHHHHHHHHCCCHHHHH
Confidence 889999999999999888765 225556666677778888888888
Q ss_pred HHHHHHHHCCCCCCHH------HH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 452 HTWEEMEKKGMGPDQR------SY--TVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 452 ~~~~~m~~~g~~p~~~------~~--~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
+++....+.+..|-.. .| .....+|.+.|++..|++.|....+
T Consensus 283 ~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 283 KTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888887765433221 22 3345678888888888877666554
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.34 E-value=3.6e-10 Score=112.09 Aligned_cols=244 Identities=15% Similarity=0.085 Sum_probs=153.2
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048749 143 FKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP---DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGE 219 (536)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 219 (536)
+..+...+ ..|+..+|.++|.-|+..|+++.|- +|.-|. .+.+...++.++.+..+.++.+.+.
T Consensus 13 la~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 13 LALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 33444444 8889999999999999999998888 888777 5677788899999888888877765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhc-----CCCCCCHHHHH---------------HHHHHHHhcCCHHHH
Q 048749 220 LDDLSAFQNLLLWLCRYKHVEV---AETFFESEK-----NEFGYDIKTMN---------------IILNGWCVLGNVYEA 276 (536)
Q Consensus 220 ~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~-----~~~~~~~~~~~---------------~li~~~~~~g~~~~A 276 (536)
.|...||..|+.+|...|++.. +++.++.+. .|+. ....|. ..+.-..-.|-++.+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 6888899999999999988654 333222221 1111 111111 111122223333444
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 277 KRFWKDIIKSK-CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 277 ~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
++++..+.... ..|-. .+++-+... ..-..++........-.|++.+|.+++.+-...|+.+.|..++.+|.+
T Consensus 159 lkll~~~Pvsa~~~p~~----vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQ----VFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCcccccchHH----HHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 44333332111 01111 113322222 222333333333321157888888888888888888888888888888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCC
Q 048749 356 RGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKK 411 (536)
Q Consensus 356 ~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~ 411 (536)
.|.+.+.+-|..|+-+ .++...+..+++-|.+.| +.|+..|+..-+..+-+
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~g--v~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKG--VQPGSETQADYVIPQLS 283 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhc--CCCCcchhHHHHHhhhc
Confidence 8888777777777765 677777888888888888 88888887766655544
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=4.3e-12 Score=83.19 Aligned_cols=49 Identities=29% Similarity=0.542 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 429 MSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLY 477 (536)
Q Consensus 429 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 477 (536)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4556666666666666666666666666666666666666666666654
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=5.3e-12 Score=82.76 Aligned_cols=49 Identities=35% Similarity=0.649 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 255 YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALT 303 (536)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 303 (536)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=7.4e-10 Score=97.80 Aligned_cols=230 Identities=12% Similarity=0.036 Sum_probs=174.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 048749 192 GILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLG 271 (536)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 271 (536)
+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-..|.+..+++.|+.++.+-...++.|+....-+.+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 66788888999999999888877764 5777788888888888888888888888876667777777777778888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 048749 272 NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLR 351 (536)
Q Consensus 272 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 351 (536)
+.++|.++++...+.. +.++.....+...|.-.++++-|+.+|+++.+.|+. ++..|+.+.-+|.-.+++|-++.-|.
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 8888888888887664 445666666677777788888888888888888876 66777777777778888888888888
Q ss_pred HHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCC
Q 048749 352 EMKNRGCLPN--VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKM 429 (536)
Q Consensus 352 ~m~~~g~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~ 429 (536)
+....--.|+ ..+|..+-......|++..|.+.|+-....+ .-
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-----------------------------------~~ 427 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-----------------------------------AQ 427 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-----------------------------------cc
Confidence 7765433333 3456666666777788888888877776554 22
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 048749 430 STDTYNVILKLYVNWDCEDKVRHTWEEMEKK 460 (536)
Q Consensus 430 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 460 (536)
+...+|.|.-.-.+.|+++.|..+++.....
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 4567777777777888888888888776654
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=3.3e-08 Score=92.32 Aligned_cols=350 Identities=11% Similarity=0.048 Sum_probs=210.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH-
Q 048749 134 FDWEAAYTFFKWVSREGDYSPG-SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIG- 209 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~- 209 (536)
+.++.|++++.|++.. .|| +.-|......|...|+|++..+--.+.. .+.-+..+.--.+++-..|++++|+.
T Consensus 129 kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred ccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHh
Confidence 6899999999999985 567 7888899999999999999887666655 32223344444555666666666542
Q ss_pred ---------------------HHHH---------HHHcC--CCCCHHHHHHHHHHHHhc---------------------
Q 048749 210 ---------------------VFDR---------RKEFG--ELDDLSAFQNLLLWLCRY--------------------- 236 (536)
Q Consensus 210 ---------------------~~~~---------m~~~g--~~~~~~~~~~ll~~~~~~--------------------- 236 (536)
++.+ |.+.+ +.|+.....+....+...
T Consensus 206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~ 285 (606)
T KOG0547|consen 206 VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALE 285 (606)
T ss_pred hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHH
Confidence 1111 11111 335555444444433110
Q ss_pred ----C---CHHHHHHHHHHhc--CCCCC-----CH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048749 237 ----K---HVEVAETFFESEK--NEFGY-----DI------KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYA 296 (536)
Q Consensus 237 ----~---~~~~a~~~~~~~~--~~~~~-----~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 296 (536)
+ .+..|...+.+-. ....+ |. .+...-...+.-.|+.-.|..-|+..+.....++ ..|-
T Consensus 286 ~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI 364 (606)
T KOG0547|consen 286 ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYI 364 (606)
T ss_pred HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHH
Confidence 0 1122222222200 00011 11 1111111223346778888888888887653322 2366
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048749 297 TFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIK 376 (536)
Q Consensus 297 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 376 (536)
-+..+|....+.++.++.|++..+.+-. ++.+|..-...+.-.+++++|..=|++.+..... ++..|-.+--+..+.+
T Consensus 365 ~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 365 KRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQH 442 (606)
T ss_pred HHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHH
Confidence 6777788888888888888888775332 5556666667777778888888888888765322 4555666666666778
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc---CCCChHHHHHHHHHHCC-----CCCCH--HHHHHHHHHHHccCC
Q 048749 377 RMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNG-----CKMST--DTYNVILKLYVNWDC 446 (536)
Q Consensus 377 ~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~-----~~~~~--~~~~~li~~~~~~g~ 446 (536)
++++++..|++.+++-+. -...|+..-..+ .+.+.|.+.++...+.. +-.+. .+.-.++..- -.++
T Consensus 443 k~~~~m~~Fee~kkkFP~---~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d 518 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKKFPN---CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKED 518 (606)
T ss_pred HHHHHHHHHHHHHHhCCC---CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhh
Confidence 888888888888887532 223344333333 55667777777665532 11121 2222222222 2378
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 447 EDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 447 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
++.|..++++..+.+. -....|..|...-.+.|+.++|+++|++-..
T Consensus 519 ~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 519 INQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888877632 1345677888888888888888888887653
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3.4e-08 Score=93.88 Aligned_cols=287 Identities=9% Similarity=0.028 Sum_probs=183.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVL 270 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 270 (536)
......-+-..+++.+..++++...+.. +++...+..-|.++...|+..+-..+=.++.+..|....+|-++.--|...
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHh
Confidence 3334444556667777777777766654 455555555555666666655555554555555566667777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHhcCChHHHHH
Q 048749 271 GNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK--GRKPDVVTCNCIIDALCFKKRIPEALE 348 (536)
Q Consensus 271 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~ 348 (536)
|+..+|.+.|.+....+ +.=...|-.....|+-.|..|+|+..|...-+. |.. -+..| +.--|.+.++.+.|.+
T Consensus 326 ~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNNLKLAEK 401 (611)
T ss_pred cCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhccHHHHHH
Confidence 77777777776654332 111345666667777777777777766665553 221 11222 2233666677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCC
Q 048749 349 VLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCK 428 (536)
Q Consensus 349 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~ 428 (536)
.|.+..... +-|+...+-+.-.....+.+.+|..+|......- +...... .
T Consensus 402 Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i---------------------------k~~~~e~-~ 452 (611)
T KOG1173|consen 402 FFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI---------------------------KSVLNEK-I 452 (611)
T ss_pred HHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh---------------------------hhccccc-c
Confidence 777665542 2255666666655666677777777776654211 0000111 1
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHH
Q 048749 429 MSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVN 508 (536)
Q Consensus 429 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~ 508 (536)
....+++.|..+|.+.+.+++|+..+++..... +.|..++.++.-.|...|+++.|.+.|++.+. +.||..+...++
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL 529 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELL 529 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHH
Confidence 245578889999999999999999999988763 45888899998889999999999999998875 688887765555
Q ss_pred HHHHhh
Q 048749 509 DMNIKL 514 (536)
Q Consensus 509 ~~~~~~ 514 (536)
..++..
T Consensus 530 ~~aie~ 535 (611)
T KOG1173|consen 530 KLAIED 535 (611)
T ss_pred HHHHHh
Confidence 554443
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4.1e-08 Score=93.39 Aligned_cols=285 Identities=12% Similarity=0.038 Sum_probs=226.2
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048749 152 YSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNL 229 (536)
Q Consensus 152 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 229 (536)
...++.....-.+-+...+++.+..++++... +++....+..-|..+...|+..+-..+=.+|.+.- +-.+.+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 34567777888888889999999999999987 77888888888999999999888888888888754 6667899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC
Q 048749 230 LLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS--KCEPDSVTYATFVNALTKKGK 307 (536)
Q Consensus 230 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~ 307 (536)
..-|.-.|..++|.+.|.+...--+.=...|-.....|+-.|..|+|+..+....+. |... -+--+.--|.+.+.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl---P~LYlgmey~~t~n 395 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL---PSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc---hHHHHHHHHHHhcc
Confidence 988888899999999999843222334457888899999999999999998877653 3221 12223445788999
Q ss_pred HhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHhcCCHHHH
Q 048749 308 LGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNR----GCL--PNVTTYNSLIKHLCKIKRMETV 381 (536)
Q Consensus 308 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p~~~~~~~li~~~~~~~~~~~A 381 (536)
++.|.++|.+.... .+.|+.+.+-+.-...+.+.+.+|..+|+..... +.. .-..+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 99999999998876 4557888888877788889999999999987621 111 1345688889999999999999
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 048749 382 YEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKG 461 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 461 (536)
+..+++..... +-+..++.++.-.|...|+++.|.+.|.+....
T Consensus 475 I~~~q~aL~l~-----------------------------------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l- 518 (611)
T KOG1173|consen 475 IDYYQKALLLS-----------------------------------PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL- 518 (611)
T ss_pred HHHHHHHHHcC-----------------------------------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc-
Confidence 99999988765 347888999999999999999999999987764
Q ss_pred CCCCHHHHHHHHHHHHh
Q 048749 462 MGPDQRSYTVMIHGLYD 478 (536)
Q Consensus 462 ~~p~~~~~~~li~~~~~ 478 (536)
.||..+-..++..+..
T Consensus 519 -~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 519 -KPDNIFISELLKLAIE 534 (611)
T ss_pred -CCccHHHHHHHHHHHH
Confidence 7888777777765443
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=3.4e-09 Score=93.70 Aligned_cols=230 Identities=11% Similarity=0.025 Sum_probs=194.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048749 160 NAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKH 238 (536)
Q Consensus 160 ~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 238 (536)
+.+.+.|.+.|.+.+|.+.|+... ..+-+.||-.|-++|.+..+++.|+.+|.+-.+. ++-|+.........+-..++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 678899999999999999999877 6677889999999999999999999999987764 24444444556677888999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 048749 239 VEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAM 318 (536)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 318 (536)
.++|.++++...+..+.++.....+..+|.-.++.+.|+++++.+...|+ -+...|+.+.-+|.-.+++|-++.-|++.
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 99999999997666677888888888889999999999999999999995 47788999999999999999999999998
Q ss_pred HHcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 319 WEKGRKPD--VVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 319 ~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
...-..|+ ..+|-.+-......|++..|.+.|+-....+.. +...+|.|.-.-.+.|+.++|..++.......
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 87655454 345667777778899999999999988766433 67889988888889999999999999887744
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.14 E-value=3.8e-06 Score=81.45 Aligned_cols=389 Identities=10% Similarity=0.071 Sum_probs=219.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC---------CCCCHHHHHH
Q 048749 123 DLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP---------DLVNEKTYGI 193 (536)
Q Consensus 123 ~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~ 193 (536)
..++..+... +-++-++++++.-.+ .++..-+-.|..+++.+++++|.+.+..+. .+.+...|..
T Consensus 142 ~lyl~Fv~~~-~lPets~rvyrRYLk-----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~e 215 (835)
T KOG2047|consen 142 DLYLKFVESH-GLPETSIRVYRRYLK-----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLE 215 (835)
T ss_pred HHHHHHHHhC-CChHHHHHHHHHHHh-----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHH
Confidence 3445555444 356677777777654 245557777788888888888888887776 2345566777
Q ss_pred HHHHHHhcCCHHHHH---HHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHH-hcCCCCCCHHHHHHHHHHH
Q 048749 194 LLNRYAAAHMVEEAI---GVFDRRKEFGELDDL--SAFQNLLLWLCRYKHVEVAETFFES-EKNEFGYDIKTMNIILNGW 267 (536)
Q Consensus 194 li~~~~~~g~~~~A~---~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~li~~~ 267 (536)
+-...+++.+.-..+ ++++.+... -+|. ..|.+|.+.|.+.|+++.|..+|++ +..- ..+.-|+.+-+.|
T Consensus 216 lcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Y 291 (835)
T KOG2047|consen 216 LCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAY 291 (835)
T ss_pred HHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHH
Confidence 777766665544333 333333321 2343 3677888888888888888888887 3322 2444455555555
Q ss_pred HhcCC----------------------HHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 048749 268 CVLGN----------------------VYEAKRFWKDIIKSK-----------CEPDSVTYATFVNALTKKGKLGTALRL 314 (536)
Q Consensus 268 ~~~g~----------------------~~~A~~~~~~m~~~g-----------~~~~~~~~~~li~~~~~~g~~~~a~~~ 314 (536)
+.... ++-.+.-|+.+...+ -+-++..|..-+. ...|+..+-...
T Consensus 292 a~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~t 369 (835)
T KOG2047|consen 292 AQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINT 369 (835)
T ss_pred HHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHH
Confidence 53211 111222233222211 0122333333222 234566677777
Q ss_pred HHHHHHcCCCCC------HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 315 FQAMWEKGRKPD------VVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN---VTTYNSLIKHLCKIKRMETVYEYL 385 (536)
Q Consensus 315 ~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~A~~~~ 385 (536)
|.+..+. +.|- ...|..+...|-..|+++.|..+|++..+...+-- ..+|..-...=.+..+++.|+++.
T Consensus 370 yteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm 448 (835)
T KOG2047|consen 370 YTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLM 448 (835)
T ss_pred HHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 7777765 3332 23577888889999999999999999877543311 344555555556778899999988
Q ss_pred HHHHhcCC---------CCCCcHHHHH---------HHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 048749 386 DEMEQKNG---------SCLPNEITFN---------YLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCE 447 (536)
Q Consensus 386 ~~m~~~~~---------~~~p~~~~~~---------~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 447 (536)
+....... ...+....++ -+..+||-.+....+++.+.+..+.......|- ...+-...-+
T Consensus 449 ~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny-AmfLEeh~yf 527 (835)
T KOG2047|consen 449 RRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY-AMFLEEHKYF 527 (835)
T ss_pred HhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhHHH
Confidence 87654320 0111112222 223345555666677777777654432222221 1122234446
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCcHH-H-HHHHHHHHHhhhhhhhhh
Q 048749 448 DKVRHTWEEMEKKGMGPDQ-RSYTVMIHGLYDK---GRLEDALSYFHEMRLKGMVPEPR-T-GILVNDMNIKLKERGEQG 521 (536)
Q Consensus 448 ~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~-t-~~~l~~~~~~~~~~~~a~ 521 (536)
+++.+++++-...--.|+. ..|+..+.-+.+. -+.+.|..+|++.++ |..|... | |.+....=-+.|....+.
T Consensus 528 eesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~am 606 (835)
T KOG2047|consen 528 EESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAM 606 (835)
T ss_pred HHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6777776654443223443 5677777666542 457889999999888 6666533 3 333333333344444555
Q ss_pred HHHHH
Q 048749 522 KKVIK 526 (536)
Q Consensus 522 ~~~~~ 526 (536)
+.+.+
T Consensus 607 siyer 611 (835)
T KOG2047|consen 607 SIYER 611 (835)
T ss_pred HHHHH
Confidence 55554
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.13 E-value=3.5e-07 Score=90.61 Aligned_cols=293 Identities=13% Similarity=0.121 Sum_probs=191.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc----
Q 048749 195 LNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVL---- 270 (536)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 270 (536)
...+...|++++|++.+..-.. -+.............+.+.|+.++|..++..+....+.+..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 3456777888888888866443 23334445566677788888888888888886555455555555555555222
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 048749 271 -GNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL-GTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALE 348 (536)
Q Consensus 271 -g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 348 (536)
.+.+....+++++...- |...+...+.-.+.....+ ..+..++..+...|++ .+|+.|-..|....+.+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 24666777777776542 3322222222112221122 3445556666667765 356666666665555555555
Q ss_pred HHHHHHHC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCC
Q 048749 349 VLREMKNR----G----------CLPNVT--TYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKP 412 (536)
Q Consensus 349 ~~~~m~~~----g----------~~p~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~ 412 (536)
++...... + -.|+.. ++..+.+.|-..|++++|++++++.++.. |
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht----P--------------- 225 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT----P--------------- 225 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC----C---------------
Confidence 55554322 1 123332 34555677778888888888888877754 2
Q ss_pred ChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 413 EEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEM 492 (536)
Q Consensus 413 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 492 (536)
..+..|..-.+.+-+.|++++|.+.++.....+.. |...-+..+..+.+.|++++|.+++..+
T Consensus 226 ----------------t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 226 ----------------TLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred ----------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 24678888899999999999999999999987543 7777777888899999999999999999
Q ss_pred HHCCCCCcHHH--------HHHHHHHHHhhhhhhhhhHHHHHhhh
Q 048749 493 RLKGMVPEPRT--------GILVNDMNIKLKERGEQGKKVIKLTS 529 (536)
Q Consensus 493 ~~~g~~p~~~t--------~~~l~~~~~~~~~~~~a~~~~~~~~~ 529 (536)
...+..|-... ..-...++.+.|+.+.|.+.+..+.+
T Consensus 289 tr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 289 TREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred cCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88876443322 24556778888888888888776543
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=4.5e-07 Score=83.09 Aligned_cols=266 Identities=12% Similarity=0.012 Sum_probs=149.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048749 219 ELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATF 298 (536)
Q Consensus 219 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 298 (536)
++.|......+...+...|+.+.|...|++...--+.+........-.+.+.|+.+....+...+.... .-+...|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 345555666666666666666666666666433222222222222223345666666655555554321 1222333333
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 299 VNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRM 378 (536)
Q Consensus 299 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 378 (536)
...+....++..|+.+-++.++..- -+...|-.-...+...|+.++|.--|+...... +-+...|.-|+..|...|..
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 3444556666777766666655421 122333333345566677777777776665432 12566777777777777777
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHH-HHhcC----CCChHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHH
Q 048749 379 ETVYEYLDEMEQKNGSCLPNEITFNYL-LKSLK----KPEEVPWVLERMERNGCKMS-TDTYNVILKLYVNWDCEDKVRH 452 (536)
Q Consensus 379 ~~A~~~~~~m~~~~~~~~p~~~~~~~l-l~~~~----~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~ 452 (536)
.+|..+-+...+.- ..+..+...+ -..|. ..+.|.++++.-.+. .|+ ....+.+...|...|..+.++.
T Consensus 385 kEA~~~An~~~~~~---~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 385 KEANALANWTIRLF---QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred HHHHHHHHHHHHHh---hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHH
Confidence 77766655554431 2233333322 11121 123444444443332 333 4556677777888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 453 TWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 453 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
+++..... .||....+.|.+.+...+.+++|.+.|...+.
T Consensus 460 LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 460 LLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88877764 67888888888888888888888888887765
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.11 E-value=1.3e-07 Score=92.41 Aligned_cols=244 Identities=18% Similarity=0.173 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhc----C--C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-C
Q 048749 223 LSAFQNLLLWLCRYKHVEVAETFFESEK----N--E-FGYDIKT-MNIILNGWCVLGNVYEAKRFWKDIIKS-----K-C 288 (536)
Q Consensus 223 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~--~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~ 288 (536)
..++..+...|...|+++.|+.+++... + + ..|.+.+ .+.+...|...+++++|..+|+++... | .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 4466668888888899998888887731 1 1 1233333 344667788899999999999888642 2 1
Q ss_pred CCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CCC-CCH-hhHHHHHHHHHhcCChHHHHHHHHHHHHC----
Q 048749 289 EPD-SVTYATFVNALTKKGKLGTALRLFQAMWEK-----GRK-PDV-VTCNCIIDALCFKKRIPEALEVLREMKNR---- 356 (536)
Q Consensus 289 ~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~-p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 356 (536)
.|. ..+++.|..+|.+.|++++|...++...+- |.. |.+ ..++.+...|+..+++++|..++....+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 222 356777778899999998888877766542 221 222 23566777788889999998888866431
Q ss_pred -CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHH
Q 048749 357 -GCL--PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDT 433 (536)
Q Consensus 357 -g~~--p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~ 433 (536)
|.. --..+++.|-..|.+.|++++|.++++++.... +........-....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~---------------------------~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL---------------------------RELLGKKDYGVGKP 411 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH---------------------------HhcccCcChhhhHH
Confidence 211 124578888999999999999999999876542 00001111123467
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHH----HCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 434 YNVILKLYVNWDCEDKVRHTWEEME----KKGM-GPD-QRSYTVMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 434 ~~~li~~~~~~g~~~~A~~~~~~m~----~~g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
++.|...|.+.+++.+|.++|.+.. ..|. .|+ ..+|..|...|.+.|+++.|.++.+...
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7888899999999999999988754 3332 233 4678999999999999999999988776
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.11 E-value=2.8e-08 Score=97.08 Aligned_cols=244 Identities=15% Similarity=0.112 Sum_probs=176.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHh----cCC---
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEF-----G-ELDDLS-AFQNLLLWLCRYKHVEVAETFFESE----KNE--- 252 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~----~~~--- 252 (536)
-..+...+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++++|..+|+.+ ...
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456666889999999999999999887654 2 123333 3344677888999999999988884 111
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHc---
Q 048749 253 -FGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS-----K-CEPDS-VTYATFVNALTKKGKLGTALRLFQAMWEK--- 321 (536)
Q Consensus 253 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 321 (536)
.+.-..+++.|...|.+.|++++|...++...+- | ..|.+ ..++.+...|+..+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1223456788888999999999998888776541 2 12233 23566777889999999999999876653
Q ss_pred CCCC----CHhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 322 GRKP----DVVTCNCIIDALCFKKRIPEALEVLREMKNR----GC--LP-NVTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 322 g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~--~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
-..+ -..+++.|...|.+.|++++|+++|+++... +- .+ ....++.|...|.+.++.++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 1222 2467999999999999999999999988543 11 12 245677888899999999999999987643
Q ss_pred cCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 048749 391 KNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEME 458 (536)
Q Consensus 391 ~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 458 (536)
-...+.|+ .+-...+|..|...|.+.|+++.|.++.+...
T Consensus 438 i~~~~g~~----------------------------~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPD----------------------------HPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCC----------------------------CCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 21101121 13346789999999999999999999988776
No 71
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.07 E-value=1.4e-05 Score=77.90 Aligned_cols=390 Identities=11% Similarity=0.107 Sum_probs=195.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 048749 124 LIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAA 201 (536)
Q Consensus 124 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~ 201 (536)
.+.+++.+...++++|++.|..+.+.+ +.|...|.-+.-.-++.|+++.....-.... .+.....|..+..++.-.
T Consensus 79 Hv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 79 HVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL 156 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 344555554445666666666655543 3445555444444445555554444433333 233444566666666666
Q ss_pred CCHHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 202 HMVEEAIGVFDRRKEFG-ELDDLSAFQNLL------LWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVY 274 (536)
Q Consensus 202 g~~~~A~~~~~~m~~~g-~~~~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 274 (536)
|+...|..+.+...+.- -.|+...+.... ....+.|.++.|.+.+......+......-..-...+.+.++++
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHH
Confidence 66666666666665443 234444443322 22345566666666655544333333333344445556667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHhHHH-HHHHHHHHc---CCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 048749 275 EAKRFWKDIIKSKCEPDSVTYATFV-NALTKKGKLGTAL-RLFQAMWEK---GRKPDVVTCNCIIDALCFKKRIPEALEV 349 (536)
Q Consensus 275 ~A~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~a~-~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~ 349 (536)
+|..++..++..+ ||...|...+ .++.+-.+.-+++ .+|....+. ...|-....+. .....-.+..-.+
T Consensus 237 eA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv----l~~eel~~~vdky 310 (700)
T KOG1156|consen 237 EAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSV----LNGEELKEIVDKY 310 (700)
T ss_pred hHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHH----hCcchhHHHHHHH
Confidence 7777777666553 4544444433 3332222222222 444444332 01111111110 0011112223334
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCC--------CCCCcHHHHHHHHH--hc---CCC
Q 048749 350 LREMKNRGCLPNVTTYNSLIKHLCKIKRMET----VYEYLDEMEQKNG--------SCLPNEITFNYLLK--SL---KKP 412 (536)
Q Consensus 350 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~----A~~~~~~m~~~~~--------~~~p~~~~~~~ll~--~~---~~~ 412 (536)
+..+.+.|+++- +..+...|-.-...+- +..+...+...+. .-.|....|....- .+ +..
T Consensus 311 L~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~ 387 (700)
T KOG1156|consen 311 LRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDY 387 (700)
T ss_pred HHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccH
Confidence 445555565432 2222222221111111 1112222211110 01456555554433 22 445
Q ss_pred ChHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 413 EEVPWVLERMERNGCKMS-TDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHE 491 (536)
Q Consensus 413 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 491 (536)
+.|...++..... .|+ ...|..=.+.+...|++++|..++++..+.+ .||...-..-..-..+.++.++|.++...
T Consensus 388 ~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 388 EVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSK 464 (700)
T ss_pred HHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 5666666655553 444 4556666788999999999999999998865 34555444555666788999999999999
Q ss_pred HHHCCCC-CcHHH-----HH--HHHHHHHhhhhhhhhhHHHHHh
Q 048749 492 MRLKGMV-PEPRT-----GI--LVNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 492 m~~~g~~-p~~~t-----~~--~l~~~~~~~~~~~~a~~~~~~~ 527 (536)
+.+.|.. .+..+ |- --..++.+.+++++|.+.+..+
T Consensus 465 FTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 465 FTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 9888751 11111 11 1134555666666666655443
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=1.9e-07 Score=87.34 Aligned_cols=216 Identities=12% Similarity=-0.043 Sum_probs=145.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPG--SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
..+.++.-+..++......|+ ...|..+..+|.+.|++++|...|++.. .+.+...|+.+...+...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 556677777777654323332 4568888888899999999999998877 667788999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEP 290 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 290 (536)
|++..+.. +.+..++..+..++...|++++|.+.|+......+.+.. .......+...++.++|...|++..... .+
T Consensus 121 ~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~ 197 (296)
T PRK11189 121 FDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENLKQRYEKL-DK 197 (296)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhhC-Cc
Confidence 99988754 445677888888888899999999998885433233331 1222222345678899999887655332 23
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CC-----CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 291 DSVTYATFVNALTKKGKLGTALRLFQAMWEKG-RK-----PDVVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
+...+ .......|+.+.+ +.+..+.+.. .. .....|..+...+.+.|++++|+..|++..+.+
T Consensus 198 ~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 198 EQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred cccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 32222 2223345665544 3444444321 11 123467778888888888888888888887764
No 73
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=4.8e-08 Score=91.21 Aligned_cols=222 Identities=14% Similarity=0.094 Sum_probs=173.9
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 048749 129 INRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEE 206 (536)
Q Consensus 129 l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~ 206 (536)
++...|++..|.+-|+.++... +.+...|-.+..+|....+-++....|++.. ++.+..+|..-...+.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHH
Confidence 3445689999999999999875 2333347788889999999999999999987 67788899888888888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 207 AIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 207 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
|..=|++.++.. +-+...|..+.-+..+.+.+++++..|++....+|.-+.+|+.....+...++++.|.+.|+..++.
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 999999998765 4556778888888889999999999999998899999999999999999999999999999988764
Q ss_pred C-----CCCCHHHH--HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 287 K-----CEPDSVTY--ATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 287 g-----~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
. +..+...+ -.++-. --.+++..|.+++....+...+ ....|..|...-.+.|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 11122211 111111 1247888888888888775322 345677888888888888888888887653
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.04 E-value=4.4e-07 Score=76.97 Aligned_cols=196 Identities=12% Similarity=0.024 Sum_probs=104.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 048749 192 GILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLG 271 (536)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 271 (536)
..|.-.|.+.|+...|.+-+++.++.. +.+..++..+...|.+.|..+.|.+-|+...+.-+-+-.+.|.....+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 334445555555555555555555543 3334455555555555555555555555533333444555555555555556
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 048749 272 NVYEAKRFWKDIIKSK-CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVL 350 (536)
Q Consensus 272 ~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 350 (536)
.+++|...|++....- ..--..+|..+.-+..+.|+.+.|...|++..+..-. ...+...+.....+.|++-.|...+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHH
Confidence 6666666665555432 1111235555555555666666666666665554211 2334455555556666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 351 REMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 351 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
+.....+. ++..+.-..|..--..|+.+.+-++=..+..
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66555444 5555555555555556666665555555544
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.01 E-value=3.7e-06 Score=81.65 Aligned_cols=60 Identities=8% Similarity=0.058 Sum_probs=40.2
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCC--C----HHHHHHHH--HHHHhcCCHHHHHHHHHHHHHC
Q 048749 436 VILKLYVNWDCEDKVRHTWEEMEKKGMGP--D----QRSYTVMI--HGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 436 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~----~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
....++...|+.+.|..+++.+....-.+ . ..+-..++ .++...|+.++|.+.+...+..
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56777888999999999999887632110 1 11222223 3456889999999988877653
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.01 E-value=8.2e-07 Score=83.15 Aligned_cols=95 Identities=16% Similarity=0.016 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCF 339 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 339 (536)
|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|...|+...+.. +-+..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444444555555555555555554443 2334455555555555555555555555555431 1123344444455555
Q ss_pred cCChHHHHHHHHHHHHC
Q 048749 340 KKRIPEALEVLREMKNR 356 (536)
Q Consensus 340 ~g~~~~A~~~~~~m~~~ 356 (536)
.|++++|.+.|+...+.
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55555555555555443
No 77
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.00 E-value=5.2e-06 Score=80.55 Aligned_cols=332 Identities=11% Similarity=0.082 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCC----------------------HHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHM----------------------VEEAIGVFD 212 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~----------------------~~~A~~~~~ 212 (536)
...|++|.+-|.+.|.++.|.++|++.. ...++.-|+.+.++|++-.. ++-.+.-|+
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 3568888888889999999998888765 44555566666666654322 111222222
Q ss_pred HHHHcCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCC------CHHHHHHHHHHHHhcCCHHH
Q 048749 213 RRKEFGE-----------LDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGY------DIKTMNIILNGWCVLGNVYE 275 (536)
Q Consensus 213 ~m~~~g~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 275 (536)
.+...+. +.++..|..-+. +..|+..+....+.+....+.| -...|..+...|-..|+++.
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 2222110 011111111111 1223344444445443222222 23467888888888899999
Q ss_pred HHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-----------C------CHhhHHHHHH
Q 048749 276 AKRFWKDIIKSKCEPD---SVTYATFVNALTKKGKLGTALRLFQAMWEKGRK-----------P------DVVTCNCIID 335 (536)
Q Consensus 276 A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----------p------~~~~~~~li~ 335 (536)
|..+|++..+-..+-- ..+|......=.+..+++.|+++.+.....-.. + +..+|...++
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 9999888876542211 245555555556677788888877765543111 1 1224455555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcH-HHHHHHHH----hcC
Q 048749 336 ALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNE-ITFNYLLK----SLK 410 (536)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~-~~~~~ll~----~~~ 410 (536)
.--..|-++....+++.+.+..+- ++...-....-+-.+.-+++++++|++-+..- ..|+. ..|+..|. .|+
T Consensus 486 leEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LF--k~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLF--KWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC--CCccHHHHHHHHHHHHHHHhc
Confidence 555667777777788887765443 22111111112334455777777777665544 33443 23443333 333
Q ss_pred --CCChHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHH
Q 048749 411 --KPEEVPWVLERMERNGCKMSTDT--YNVILKLYVNWDCEDKVRHTWEEMEKKGMGPD--QRSYTVMIHGLYDKGRLED 484 (536)
Q Consensus 411 --~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~ 484 (536)
+.+.+..+|++..+ |++|...- |......--+.|-...|+.++++.... +++. ...||..|.--...=-+..
T Consensus 563 g~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 35677788888777 66654322 222222222456667777777765432 2222 1345555543332222233
Q ss_pred HHHHHHHHHH
Q 048749 485 ALSYFHEMRL 494 (536)
Q Consensus 485 A~~~~~~m~~ 494 (536)
...+|++.++
T Consensus 641 TR~iYekaIe 650 (835)
T KOG2047|consen 641 TREIYEKAIE 650 (835)
T ss_pred cHHHHHHHHH
Confidence 3444444444
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.00 E-value=5.6e-07 Score=76.34 Aligned_cols=203 Identities=11% Similarity=0.042 Sum_probs=160.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048749 158 VFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCR 235 (536)
Q Consensus 158 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 235 (536)
+...+.-.|.+.|+...|..-+++.. ++.+..+|..+...|.+.|..+.|.+-|++..+.. +.+..+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 45566677888999999999999887 66777889999999999999999999999888765 5567788888888999
Q ss_pred cCCHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 048749 236 YKHVEVAETFFESEK--NEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 236 ~~~~~~a~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 313 (536)
.|.+++|...|++.. .....-..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 999999999998842 2344456678888888889999999999999888765 2334567778888889999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048749 314 LFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTY 365 (536)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 365 (536)
+++.....+. ++....-..|..--..|+-+.+-++=..+... -|...-|
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 9988888765 78888878888888889988887776666543 3444433
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.97 E-value=3.6e-06 Score=81.74 Aligned_cols=196 Identities=9% Similarity=-0.069 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC----CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP----DLVNE-KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQN--- 228 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~--- 228 (536)
..|..+...+...|+.+.+...+.... ...+. .........+...|++++|.+++++..+.. +.|...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 344444444545555555444444332 11121 122222334455666666666666665542 333333331
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 229 LLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL 308 (536)
Q Consensus 229 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 308 (536)
+.......+..+.+.+.+.......+........+...+...|++++|.+.+++..+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 11111123344444444443222223333444455556666777777777777766654 33455566666666677777
Q ss_pred hHHHHHHHHHHHcCC-CCCH--hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048749 309 GTALRLFQAMWEKGR-KPDV--VTCNCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 309 ~~a~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
++|..++++...... .++. ..|..+...+...|++++|..++++..
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 777777666655321 1222 233455666667777777777777664
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=3.3e-05 Score=69.80 Aligned_cols=383 Identities=9% Similarity=0.059 Sum_probs=214.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 048749 124 LIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHM 203 (536)
Q Consensus 124 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~ 203 (536)
..++-....-|++++|+..+..+.... .++...+-.+.-.+.-.|.+.+|..+-++.. .+.-.-..|+..-.+.++
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~--k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAP--KTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHhCc
Confidence 334444444579999999999988764 5666777777766677888999998888875 333344455555556666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHH
Q 048749 204 VEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNI-ILNGWCVLGNVYEAKRFWKD 282 (536)
Q Consensus 204 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~ 282 (536)
-++-..+...+.+.- ..-.+|.....-.-.+++|.+++.++... .|.....|. +.-+|.+..-++-+.++++-
T Consensus 137 Ek~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-n~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQD-NPEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 666655555444311 11223333333344567777777775332 233333333 33345666667777766665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc--CCH---------------------------------hHHHHHHHHHHHcCCCCCH
Q 048749 283 IIKSKCEPDSVTYATFVNALTKK--GKL---------------------------------GTALRLFQAMWEKGRKPDV 327 (536)
Q Consensus 283 m~~~g~~~~~~~~~~li~~~~~~--g~~---------------------------------~~a~~~~~~m~~~g~~p~~ 327 (536)
..+.- +-+..+.|.......+. |+. +.|++++--+.+ +.|
T Consensus 211 YL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IP-- 285 (557)
T KOG3785|consen 211 YLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIP-- 285 (557)
T ss_pred HHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh--hCh--
Confidence 55431 22223333332222221 221 222222222221 111
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCC--CCCCc
Q 048749 328 VTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIK-------RMETVYEYLDEMEQKNG--SCLPN 398 (536)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-------~~~~A~~~~~~m~~~~~--~~~p~ 398 (536)
..-..|+--|.+.+++++|..+.+++.-. .|-....-.++ ++..| .+.-|.+.|.-.-+.+. ...|.
T Consensus 286 EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpG 361 (557)
T KOG3785|consen 286 EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPG 361 (557)
T ss_pred HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccc
Confidence 12233444577888888888777665321 12222222222 22222 24445555554433331 02344
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHH
Q 048749 399 EITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVM-IHGLY 477 (536)
Q Consensus 399 ~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~ 477 (536)
..+..+.+--+-+.+++.-.+..+...=...|...| .+..+++..|++.+|.++|-.+....++ |..+|.++ .++|.
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYI 439 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHH
Confidence 444444444445556666555555554333344444 4678888999999999999877655444 66677655 46788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHHH-HHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 478 DKGRLEDALSYFHEMRLKGMVPEPRT-GILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 478 ~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
++++++.|++++-++- -..+..+ ..++..-|.+.+++-=+.+.+..+...
T Consensus 440 ~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred hcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 9999999987755443 3334444 677888899999998788877776544
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=7.1e-06 Score=75.48 Aligned_cols=252 Identities=12% Similarity=0.055 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFD 212 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 212 (536)
+...|.+.|-.+....-++.|+.....+.+.+...|+.++|+..|+... ++-+......-.-.+.+.|+.++...+..
T Consensus 211 ~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~ 290 (564)
T KOG1174|consen 211 KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMD 290 (564)
T ss_pred ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHH
Confidence 3334444444443333356677777777777777777777777777665 32222222222223334455554444444
Q ss_pred HHH----------------------------------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHH
Q 048749 213 RRK----------------------------------EFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIK 258 (536)
Q Consensus 213 ~m~----------------------------------~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 258 (536)
.+. +.. +.+...|..-..++...++.+.|.-.|+....--+.+..
T Consensus 291 ~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~ 369 (564)
T KOG1174|consen 291 YLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE 369 (564)
T ss_pred HHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH
Confidence 433 322 222223333334445555555555555554333344555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHhHHHHHHHHHHHcCCCCCH-hhHHHHHH
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFV-NALT-KKGKLGTALRLFQAMWEKGRKPDV-VTCNCIID 335 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~~-~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~ 335 (536)
+|.-|++.|...|.+.+|...-++..+.= +-+..+...+. ..|. ....-++|.++++.-.. +.|+. ...+.+..
T Consensus 370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 370 IYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAE 446 (564)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHH
Confidence 56666666666666555554443332210 12222222221 1111 11123455555554443 23332 23445555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 336 ALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
.+...|..++++.+++..... .||....+.|.+.+...+.+.+|++.|......+
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 666777777777777766543 4677777777777777777777777777766654
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=7.5e-05 Score=72.15 Aligned_cols=149 Identities=11% Similarity=0.103 Sum_probs=70.7
Q ss_pred ccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 048749 168 RARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLS-AFQNLLLWLCRYKHVEVAETFF 246 (536)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~ 246 (536)
+.++.++|+..++.. +..+..+...-...+-+.|++++|+++|+.+.+.+.+.... .-..++.+-. ...+. +.
T Consensus 91 rlnk~Dealk~~~~~-~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~ 164 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGL-DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LL 164 (652)
T ss_pred HcccHHHHHHHHhcc-cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HH
Confidence 566667776666633 23344455555556666677777777777766655322111 1111111111 11111 22
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC--HH-----HHHHHHHHHHhcCCHhHHH
Q 048749 247 ESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS-------KCEPD--SV-----TYATFVNALTKKGKLGTAL 312 (536)
Q Consensus 247 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~--~~-----~~~~li~~~~~~g~~~~a~ 312 (536)
+.....-..+-..+....-.+...|++.+|+++++...+. +-.-+ .. .-.-|.-++-..|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 2222111112223333344455677777777777766321 10111 11 1122333455667777777
Q ss_pred HHHHHHHHcC
Q 048749 313 RLFQAMWEKG 322 (536)
Q Consensus 313 ~~~~~m~~~g 322 (536)
++|...++..
T Consensus 245 ~iy~~~i~~~ 254 (652)
T KOG2376|consen 245 SIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHhc
Confidence 7777777763
No 83
>PF12854 PPR_1: PPR repeat
Probab=98.82 E-value=5.8e-09 Score=61.25 Aligned_cols=33 Identities=36% Similarity=0.788 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 461 GMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 461 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
|+.||..||++||.+|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677777777777777777777777777777773
No 84
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.81 E-value=3.3e-05 Score=85.02 Aligned_cols=367 Identities=11% Similarity=0.003 Sum_probs=189.4
Q ss_pred HHHHHccCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 048749 163 LDVLGRARRFVELIQVFDEMPDLVN-EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEV 241 (536)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 241 (536)
...+...|++.+|............ ..............|+++.+..+++.+.......+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 3445556666666655555541110 011111223344556777666666554221111222222333444556778888
Q ss_pred HHHHHHHhcCCC-------CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCH
Q 048749 242 AETFFESEKNEF-------GYDI--KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDS----VTYATFVNALTKKGKL 308 (536)
Q Consensus 242 a~~~~~~~~~~~-------~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~ 308 (536)
+..++....... .+.. .....+...+...|++++|...+++..+.-...+. ...+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 877776642111 1111 12222334455688888888888776653111121 2344555566778888
Q ss_pred hHHHHHHHHHHHcCCC-----CCHhhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHhcC
Q 048749 309 GTALRLFQAMWEKGRK-----PDVVTCNCIIDALCFKKRIPEALEVLREMKN----RGCL--P-NVTTYNSLIKHLCKIK 376 (536)
Q Consensus 309 ~~a~~~~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~--p-~~~~~~~li~~~~~~~ 376 (536)
++|...+++.....-. ....++..+...+...|++++|...+++... .|.. + ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 8888888777653111 1123444556667778888888888776543 2211 1 1233444555566678
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcHHH--HHH---HHHhcCCCChHHHHHHHHHHC----CCCCCH--HHHHHHHHHHHccC
Q 048749 377 RMETVYEYLDEMEQKNGSCLPNEIT--FNY---LLKSLKKPEEVPWVLERMERN----GCKMST--DTYNVILKLYVNWD 445 (536)
Q Consensus 377 ~~~~A~~~~~~m~~~~~~~~p~~~~--~~~---ll~~~~~~~~a~~~~~~~~~~----~~~~~~--~~~~~li~~~~~~g 445 (536)
++++|...+.+.........+.... +.. +....++.+++.+.++..... +..... ......+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 8888888877765432111122111 111 111235555666655554331 111000 00011223444577
Q ss_pred ChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCcH-HHHHHHHHHHHhhhhh
Q 048749 446 CEDKVRHTWEEMEKKGMGPD---QRSYTVMIHGLYDKGRLEDALSYFHEMRLK----GMVPEP-RTGILVNDMNIKLKER 517 (536)
Q Consensus 446 ~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~l~~~~~~~~~~ 517 (536)
+.+.|...+........... ...+..+..++...|++++|..++++.... |..++. .+...+..++.+.|+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 88888777666543211111 111344556677778888888888777653 333322 3466677777788888
Q ss_pred hhhhHHHHHhhh
Q 048749 518 GEQGKKVIKLTS 529 (536)
Q Consensus 518 ~~a~~~~~~~~~ 529 (536)
++|.+.+.+..+
T Consensus 748 ~~A~~~L~~Al~ 759 (903)
T PRK04841 748 SEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHH
Confidence 888777776543
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.80 E-value=3.7e-07 Score=84.20 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 048749 428 KMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRL-EDALSYFHEMRL 494 (536)
Q Consensus 428 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 494 (536)
.++..+.+.+..++...|++++|.+++.+..+.+ +-|..+...+|.+....|+. +.+.+++.++..
T Consensus 198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 3455666666666666666666666666655442 22445555566655555655 445566666554
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=9.7e-06 Score=71.41 Aligned_cols=301 Identities=13% Similarity=0.071 Sum_probs=143.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHH-HHHHHHhcCCHHHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGI-LLNRYAAAHMVEEAIGVFD 212 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~-li~~~~~~g~~~~A~~~~~ 212 (536)
++..|+++...-.+.. +.+......+...|....++..|-+.++.+. ..|...-|.. -...+-+.+.+..|+.+..
T Consensus 25 ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~ 102 (459)
T KOG4340|consen 25 RYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAF 102 (459)
T ss_pred hHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 5666666666554432 2255555666666666666666666666665 3333333322 1233445556666666655
Q ss_pred HHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048749 213 RRKEFGELDDLSAFQNLLLWL--CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEP 290 (536)
Q Consensus 213 ~m~~~g~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 290 (536)
.|... ++...-..-+.+. ...+++..+..+.++.... .+..+.+...-...+.|+++.|.+-|+...+-+---
T Consensus 103 ~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 103 LLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--CccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 55431 1111111111111 2234444555555554321 122222222223335566666666665555432222
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhh----HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048749 291 DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVT----CNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYN 366 (536)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 366 (536)
....|+..+ +..+.|+++.|+++..+++++|+...+.. -+-.+++ ...|+.. .|...+ -+..+|
T Consensus 178 pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt~-------~lh~Sa---l~eAfN 245 (459)
T KOG4340|consen 178 PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNTL-------VLHQSA---LVEAFN 245 (459)
T ss_pred chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccchH-------HHHHHH---HHHHhh
Confidence 234444333 33345556666666666665554321110 0000000 0000000 000000 012233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHH--HHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048749 367 SLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNY--LLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNW 444 (536)
Q Consensus 367 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~--ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 444 (536)
.-...+.+.|+++.|.+-+-.|.-... ...|.+|..- +..+-++..+..+-+..+.... +-...||..++-.||+.
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE-~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAE-EELDPVTLHNQALMNMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCccc-ccCCchhhhHHHHhcccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhh
Confidence 333445677888888888877754432 3445555543 3344455666655555555543 34467888888888888
Q ss_pred CChhHHHHHHHH
Q 048749 445 DCEDKVRHTWEE 456 (536)
Q Consensus 445 g~~~~A~~~~~~ 456 (536)
.-++.|-+++.+
T Consensus 324 eyf~lAADvLAE 335 (459)
T KOG4340|consen 324 EYFDLAADVLAE 335 (459)
T ss_pred HHHhHHHHHHhh
Confidence 878777777654
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.78 E-value=8.5e-05 Score=74.02 Aligned_cols=370 Identities=12% Similarity=0.071 Sum_probs=198.7
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHH
Q 048749 152 YSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELD-DLSAFQN 228 (536)
Q Consensus 152 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ 228 (536)
+..|...|..+.-++..+|+++.+.+.|++.. .......|+.+...|...|.-..|+.+++.-....-.| |...+-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 56678888888888888888888888888866 44556678888888888888888888887655433223 3333322
Q ss_pred HHHHHH-hcCCHHHHHHHHHHhcC---C--CCCCHHHHHHHHHHHH-----------hcCCHHHHHHHHHHHHHCC-CCC
Q 048749 229 LLLWLC-RYKHVEVAETFFESEKN---E--FGYDIKTMNIILNGWC-----------VLGNVYEAKRFWKDIIKSK-CEP 290 (536)
Q Consensus 229 ll~~~~-~~~~~~~a~~~~~~~~~---~--~~~~~~~~~~li~~~~-----------~~g~~~~A~~~~~~m~~~g-~~~ 290 (536)
.-..|. +.+.++++..+-.+... + -......|-.+.-+|. +.....++.+.+++..+.+ ..|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 223332 23444444443333211 0 0112222333333332 1112345555666655543 222
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH-CCCC----------
Q 048749 291 DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKN-RGCL---------- 359 (536)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~---------- 359 (536)
++.- .+.--|+..++++.|++..++..+.+-.-+...|..+.-.+...+++.+|+.+.+...+ .|..
T Consensus 479 ~~if--~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIF--YLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred hHHH--HHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 2222 22233455566666666666666654444566666666666666666666666654432 1110
Q ss_pred --------CCHHHHHHHHHHHHh-----------------------cCCHHHHHHHHHH-----------------HHhc
Q 048749 360 --------PNVTTYNSLIKHLCK-----------------------IKRMETVYEYLDE-----------------MEQK 391 (536)
Q Consensus 360 --------p~~~~~~~li~~~~~-----------------------~~~~~~A~~~~~~-----------------m~~~ 391 (536)
-...|...++..+-. ..+..+|.+.... +...
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 001111111111110 0011111111110 0111
Q ss_pred CCCCCCc------HHHHHHHHHh---cCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 048749 392 NGSCLPN------EITFNYLLKS---LKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGM 462 (536)
Q Consensus 392 ~~~~~p~------~~~~~~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 462 (536)
.....|+ ...|...-.. .+..+++...+.+..+.- +.....|......+...|...+|.+.|......
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-- 713 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL-- 713 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--
Confidence 1001222 1122222222 244455554444444332 335666777777788888888888888877765
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 048749 463 GP-DQRSYTVMIHGLYDKGRLEDALS--YFHEMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 463 ~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~ 527 (536)
.| ++.+..++...+.+.|+..-|.. ++.++.+-+ .-++..|.-+...+.+.|+.++|.+-+..-
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 34 35677788888888887777777 788887643 224666888888888888888887776654
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=3e-05 Score=70.03 Aligned_cols=221 Identities=13% Similarity=0.114 Sum_probs=140.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------CHhHHHHHHHHHHHcCCCCCHhh-HH
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKG-------KLGTALRLFQAMWEKGRKPDVVT-CN 331 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~-~~ 331 (536)
--.|+-.|.+.+++.+|..+.+++. +.++.-|-.-.-..+..| .+.-|.+.|+..-..+..-|... -.
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence 3445556889999999999887764 222222211111122222 24566666665555555444332 34
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc-C
Q 048749 332 CIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL-K 410 (536)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~-~ 410 (536)
++..++.-..++++.+-+++.+...=...|...+| +.++++..|++.+|.++|-.+.... .-|..+|.+++..| .
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~---ikn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPE---IKNKILYKSMLARCYI 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChh---hhhhHHHHHHHHHHHH
Confidence 55556666778899998888887664444555555 7789999999999999998774432 25678888887766 4
Q ss_pred CCChHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 411 KPEEVPWVLERMERNGCKMSTDTYNVI-LKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYF 489 (536)
Q Consensus 411 ~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 489 (536)
+.+...-.|+.|.+...+.+..+...+ ..-|-+++.+--|-+.|+++... .|++..|. |+-....-+|
T Consensus 440 ~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe---------GKRGACaG~f 508 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE---------GKRGACAGLF 508 (557)
T ss_pred hcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC---------CccchHHHHH
Confidence 444555566777776655555555444 46788899999999999998876 57777664 3333344455
Q ss_pred HHHHHCCCCC
Q 048749 490 HEMRLKGMVP 499 (536)
Q Consensus 490 ~~m~~~g~~p 499 (536)
..+....-.|
T Consensus 509 ~~l~~~~~~~ 518 (557)
T KOG3785|consen 509 RQLANHKTDP 518 (557)
T ss_pred HHHHcCCCCC
Confidence 5555443333
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.77 E-value=4.8e-07 Score=83.46 Aligned_cols=246 Identities=12% Similarity=0.028 Sum_probs=116.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDR 213 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 213 (536)
|++..++.-.+ ..... -..+......+.+++...|+++.++.-...-. .|.......+...+...++-+.++.-+++
T Consensus 15 G~Y~~~i~e~~-~~~~~-~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~ 91 (290)
T PF04733_consen 15 GNYQQCINEAS-LKSFS-PENKLERDFYQYRSYIALGQYDSVLSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKE 91 (290)
T ss_dssp T-HHHHCHHHH-CHTST-CHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHH
T ss_pred hhHHHHHHHhh-ccCCC-chhHHHHHHHHHHHHHHcCChhHHHHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 56666665444 22211 11223444555566666666654433332222 34444444444333333344444444443
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048749 214 RKEFGELD-DLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDS 292 (536)
Q Consensus 214 m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 292 (536)
....+... +..........+...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+.+ .|.
T Consensus 92 ~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~ 164 (290)
T PF04733_consen 92 LLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS 164 (290)
T ss_dssp CCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH
T ss_pred HHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH
Confidence 33322222 2222222223344556666666655432 345555566666666666666666666666432 222
Q ss_pred HHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048749 293 VTYATFVNALTK----KGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSL 368 (536)
Q Consensus 293 ~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 368 (536)
+...+..++.. ...+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.... +..+...+
T Consensus 165 -~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNl 241 (290)
T PF04733_consen 165 -ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANL 241 (290)
T ss_dssp -HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHH
Confidence 22233333322 23466666666665543 4456666666666666666666666666666544322 34444455
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHhcC
Q 048749 369 IKHLCKIKRM-ETVYEYLDEMEQKN 392 (536)
Q Consensus 369 i~~~~~~~~~-~~A~~~~~~m~~~~ 392 (536)
|.+....|+. +.+.+++.++....
T Consensus 242 iv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 242 IVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHHhCCChhHHHHHHHHHHHhC
Confidence 5555555555 44555666655543
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=9.4e-06 Score=71.49 Aligned_cols=98 Identities=9% Similarity=-0.051 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCcHHHHHH
Q 048749 428 KMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGM-VPEPRTGIL 506 (536)
Q Consensus 428 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ 506 (536)
..|++|...+.-.-. .+++.+..+-+.-+.+.. +-...|+..++-.||++.-++.|-.++-+=....+ -.++..|.+
T Consensus 274 elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L 351 (459)
T KOG4340|consen 274 ELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL 351 (459)
T ss_pred cCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH
Confidence 345566554433222 233444444444455442 23467898999999999988888887665332211 123444555
Q ss_pred HHHHHHhhhhhhhhhHHHHHh
Q 048749 507 VNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 507 l~~~~~~~~~~~~a~~~~~~~ 527 (536)
+-......-..+++.+.+.++
T Consensus 352 LdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 352 LDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHhCCCCHHHHHHHHHHH
Confidence 544444444555666555544
No 91
>PF12854 PPR_1: PPR repeat
Probab=98.73 E-value=1.8e-08 Score=59.17 Aligned_cols=32 Identities=50% Similarity=1.002 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 357 GCLPNVTTYNSLIKHLCKIKRMETVYEYLDEM 388 (536)
Q Consensus 357 g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 388 (536)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.69 E-value=0.00014 Score=80.26 Aligned_cols=332 Identities=14% Similarity=0.058 Sum_probs=205.4
Q ss_pred HHHccCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCCH--HHHHHHHHHH
Q 048749 165 VLGRARRFVELIQVFDEMP---DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGE------LDDL--SAFQNLLLWL 233 (536)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~~--~~~~~ll~~~ 233 (536)
.+...|+++.+...++.+. ...+..........+...|++++|..++....+.-- .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3455688888888888775 112222334445566778999999999987754310 1111 1222233455
Q ss_pred HhcCCHHHHHHHHHHhcCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGY-D----IKTMNIILNGWCVLGNVYEAKRFWKDIIKS----KC-EPDSVTYATFVNALT 303 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~ 303 (536)
...|+++.|...++......+. + ....+.+...+...|++++|...+++.... |- .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999884322221 2 134566667778899999999999887642 21 111234556667788
Q ss_pred hcCCHhHHHHHHHHHHHc----CCC--C-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHH
Q 048749 304 KKGKLGTALRLFQAMWEK----GRK--P-DVVTCNCIIDALCFKKRIPEALEVLREMKNR--GCLP--NVTTYNSLIKHL 372 (536)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p--~~~~~~~li~~~ 372 (536)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998887653 221 1 2233445566677789999999999887542 1112 233444566677
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCcHH--HH-H----HHHHhcCCCChHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 048749 373 CKIKRMETVYEYLDEMEQKNGSCLPNEI--TF-N----YLLKSLKKPEEVPWVLERMERNGCKMS---TDTYNVILKLYV 442 (536)
Q Consensus 373 ~~~~~~~~A~~~~~~m~~~~~~~~p~~~--~~-~----~ll~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~ 442 (536)
...|+.++|.+.+............... .. . ......+..+.+...+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999999888653210111110 00 0 111112344455555444332111111 112456777888
Q ss_pred ccCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 443 NWDCEDKVRHTWEEMEKK----GMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRLKG 496 (536)
Q Consensus 443 ~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 496 (536)
..|+.++|...+++.... |..++ ..++..+..++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999987653 33322 2355666678889999999999999988753
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=8.6e-05 Score=71.03 Aligned_cols=373 Identities=15% Similarity=0.063 Sum_probs=218.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
.++++.|+..|-.++.-. ++|...|..-..+|.+.|++++|++=-.+-. .+.=...|+-...++.-.|++++|+.-
T Consensus 15 ~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 479999999999999875 6689999999999999999999987555544 333345799999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------hcCC----CCCCHHHHHHHHHHHHh----------c
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFES------EKNE----FGYDIKTMNIILNGWCV----------L 270 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~------~~~~----~~~~~~~~~~li~~~~~----------~ 270 (536)
|.+-++.. +.|...++.+..++.... .+.+.|.. +... .......|..++..+-+ -
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 99988765 556677788887772110 01111111 1000 00111123333322211 1
Q ss_pred CCHHHHHHHHHH-----HHHC-------CCCC------------C----------HHHHHHHHHHHHhcCCHhHHHHHHH
Q 048749 271 GNVYEAKRFWKD-----IIKS-------KCEP------------D----------SVTYATFVNALTKKGKLGTALRLFQ 316 (536)
Q Consensus 271 g~~~~A~~~~~~-----m~~~-------g~~~------------~----------~~~~~~li~~~~~~g~~~~a~~~~~ 316 (536)
..+..|.-.+.. +... +..| | ..-...+.++..+..+++.+++-+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 111112111110 0000 1111 0 1224567777788888999999888
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHH
Q 048749 317 AMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSL-------IKHLCKIKRMETVYEYLDEME 389 (536)
Q Consensus 317 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-------i~~~~~~~~~~~A~~~~~~m~ 389 (536)
...+.. -+..-++....+|...|.+.+....-+...+.|-. ....|+.| -.+|.+.++++.|...|.+..
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 888764 46666777778888998888887777776665533 22333333 335666778999999999887
Q ss_pred hcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHH
Q 048749 390 QKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMST-DTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRS 468 (536)
Q Consensus 390 ~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 468 (536)
... ..|+..+ .+...+++.+..+...-. .|.. .-.-.-...+.+.|++..|...+.++++.. +-|...
T Consensus 326 te~--Rt~~~ls------~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~l 394 (539)
T KOG0548|consen 326 TEH--RTPDLLS------KLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARL 394 (539)
T ss_pred hhh--cCHHHHH------HHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHH
Confidence 766 4555322 111112222111111111 1211 111122455666777777777777777664 335566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH-HHHHHHHHHhhhhhhhhhHHHHHh
Q 048749 469 YTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRT-GILVNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l~~~~~~~~~~~~a~~~~~~~ 527 (536)
|..-.-+|.+.|.+.+|+.=.+..++. .|+... |..=..++.-..+++.+.+.+.+-
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666777777777777666665553 444433 333344444444555555555443
No 94
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=1.4e-05 Score=84.25 Aligned_cols=237 Identities=13% Similarity=0.044 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--C-----CCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 136 WEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--D-----LVNEKTYGILLNRYAAAHMVEEAI 208 (536)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-----~~~~~~~~~li~~~~~~g~~~~A~ 208 (536)
++.|.++ +...+. -+.+...|-..+....+.+++++|++++++.. . ..-...|.++++.-..-|.-+...
T Consensus 1441 pesaeDf-erlvrs--sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1441 PESAEDF-ERLVRS--SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred CcCHHHH-HHHHhc--CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 3344444 444443 25677889999999999999999999999877 1 112347888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048749 209 GVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKC 288 (536)
Q Consensus 209 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 288 (536)
++|++..+.- .....|..|...|.+.+..++|-++++.|.+.+......|...+..+.+.++-+.|..++.+..+.-.
T Consensus 1518 kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1518 KVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 8998888742 33446778888888888888888888888777777778888888888888888888888887765421
Q ss_pred CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHH
Q 048749 289 EP-DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN--VTTY 365 (536)
Q Consensus 289 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~ 365 (536)
+. .+....-.+..-.+.|+.+.+..+|+..... .+--...|+..|++-.+.|+.+.+..+|++....+..|- -..|
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 11 1222333444456778888888888888776 333456788888888888888888888888887766653 2334
Q ss_pred HHHHHHHHhcCCH
Q 048749 366 NSLIKHLCKIKRM 378 (536)
Q Consensus 366 ~~li~~~~~~~~~ 378 (536)
...+..=-+.|+-
T Consensus 1675 KkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDE 1687 (1710)
T ss_pred HHHHHHHHhcCch
Confidence 4444333333443
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=0.0004 Score=71.33 Aligned_cols=379 Identities=10% Similarity=0.047 Sum_probs=194.2
Q ss_pred CCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC-HHHHHH---HHHhCC--------C
Q 048749 117 ELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARR-FVELIQ---VFDEMP--------D 184 (536)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~---~~~~~~--------~ 184 (536)
|..+...++..+=++ ++...-+.+++.....| ..|+.++|++..+|...++ .+.-++ .++... +
T Consensus 837 gq~~~deLv~EvEkR--NRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRD 912 (1666)
T KOG0985|consen 837 GQFPVDELVEEVEKR--NRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRD 912 (1666)
T ss_pred ccCChHHHHHHHHhh--hhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccC
Confidence 333444444443333 46777778888888776 5689999999999876543 221110 011000 0
Q ss_pred C--------------------CCHHHHHHHHHHHHhcCC---HHHHH--------HHHHHHHHcCCC--CCHHHHHHHHH
Q 048749 185 L--------------------VNEKTYGILLNRYAAAHM---VEEAI--------GVFDRRKEFGEL--DDLSAFQNLLL 231 (536)
Q Consensus 185 ~--------------------~~~~~~~~li~~~~~~g~---~~~A~--------~~~~~m~~~g~~--~~~~~~~~ll~ 231 (536)
+ .....|....+.+....+ |.+++ ++++.....+++ .|+......+.
T Consensus 913 P~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVk 992 (1666)
T KOG0985|consen 913 PHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVK 992 (1666)
T ss_pred CceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHH
Confidence 0 011223344444444444 22332 344444444432 45666667788
Q ss_pred HHHhcCCHHHHHHHHHHh---cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 232 WLCRYKHVEVAETFFESE---KNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL 308 (536)
Q Consensus 232 ~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 308 (536)
++...+-..+-.++++++ .+.+..+...-|.||-...+... ....++.+++-.-+ .|++ ...+...+-+
T Consensus 993 AfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~-trVm~YI~rLdnyD-a~~i------a~iai~~~Ly 1064 (1666)
T KOG0985|consen 993 AFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADR-TRVMEYINRLDNYD-APDI------AEIAIENQLY 1064 (1666)
T ss_pred HHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcCh-HHHHHHHHHhccCC-chhH------HHHHhhhhHH
Confidence 888888888888888885 23344555555666555544332 23333333332221 1111 1112222223
Q ss_pred hHHHHHHHHHHHcC---------------------CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048749 309 GTALRLFQAMWEKG---------------------RKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNS 367 (536)
Q Consensus 309 ~~a~~~~~~m~~~g---------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 367 (536)
++|..+|+.....+ ....+.+|+.+..+-.+.|...+|++-|-+. -|+..|.-
T Consensus 1065 EEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~e 1138 (1666)
T KOG0985|consen 1065 EEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLE 1138 (1666)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHH
Confidence 33333332211000 0123456777777777777777777666443 26677788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 048749 368 LIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCE 447 (536)
Q Consensus 368 li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 447 (536)
+|+...+.|.+++..+++....++. ..|... +.++-+|.+.+..-++ .+.-.-||......+.+-|...|.+
T Consensus 1139 Vi~~a~~~~~~edLv~yL~MaRkk~--~E~~id--~eLi~AyAkt~rl~el----E~fi~gpN~A~i~~vGdrcf~~~~y 1210 (1666)
T KOG0985|consen 1139 VIDVASRTGKYEDLVKYLLMARKKV--REPYID--SELIFAYAKTNRLTEL----EEFIAGPNVANIQQVGDRCFEEKMY 1210 (1666)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhh--cCccch--HHHHHHHHHhchHHHH----HHHhcCCCchhHHHHhHHHhhhhhh
Confidence 8888888888888888777666665 444433 2444455443332221 1111234444445555555555555
Q ss_pred hHHHHHHHHHHHC--------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHH
Q 048749 448 DKVRHTWEEMEKK--------------------GMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILV 507 (536)
Q Consensus 448 ~~A~~~~~~m~~~--------------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 507 (536)
+.|.-++...... .-..+..||..+-.+|...+.+.-| +|...++.....-..-+
T Consensus 1211 ~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeel 1285 (1666)
T KOG0985|consen 1211 EAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEEL 1285 (1666)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHH
Confidence 5554444322110 0012445555555555555444332 23333344444456667
Q ss_pred HHHHHhhhhhhhhhHHHHH
Q 048749 508 NDMNIKLKERGEQGKKVIK 526 (536)
Q Consensus 508 ~~~~~~~~~~~~a~~~~~~ 526 (536)
+..+...|-++|...++..
T Consensus 1286 i~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1286 IEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHh
Confidence 7777777777766665543
No 96
>PLN02789 farnesyltranstransferase
Probab=98.63 E-value=4.8e-05 Score=71.29 Aligned_cols=200 Identities=10% Similarity=0.045 Sum_probs=92.7
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--HHHHHH
Q 048749 171 RFVELIQVFDEMP--DLVNEKTYGILLNRYAAAH-MVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHV--EVAETF 245 (536)
Q Consensus 171 ~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~--~~a~~~ 245 (536)
+.++|+.+.+++. .+.+..+|+.--.++...| +++++++.++++.+.. +.+..+|+.-...+.+.|.. +.+..+
T Consensus 52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3334444444333 2333334443333333333 3445555555444433 22333333333233333331 334444
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----HhHHHHHHHHH
Q 048749 246 FESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKK---GK----LGTALRLFQAM 318 (536)
Q Consensus 246 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~----~~~a~~~~~~m 318 (536)
++.+...-+-+..+|+...-.+.+.|+++++++.++++++.+ +.|..+|+.....+.+. |. .++.+++...+
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a 209 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA 209 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 444333334455556555555555666666666666666554 23444554444443332 11 23455555455
Q ss_pred HHcCCCCCHhhHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048749 319 WEKGRKPDVVTCNCIIDALCFK----KRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCK 374 (536)
Q Consensus 319 ~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 374 (536)
+... +-|...|+.+...+... +...+|.+.+.+..+.++ .+......|++.|+.
T Consensus 210 I~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 210 ILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 5432 22455565555555542 334456666666554332 255566666666664
No 97
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=3.3e-06 Score=83.18 Aligned_cols=222 Identities=12% Similarity=0.029 Sum_probs=181.6
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 153 SPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
+|--..-..+...+...|-...|..+|++.. .|.-+|.+|+..|+..+|..+...-.+ -+||+..|..+.+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3444455667888999999999999999986 899999999999999999999988877 37999999999998
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTAL 312 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 312 (536)
.....-++.|.++.+....+ +-..+.....+.++++++.+.|+.-.+.. +.-..+|-..-.+..+.++++.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 88888889999998875332 11222222235799999999999877655 456678888888889999999999
Q ss_pred HHHHHHHHcCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 313 RLFQAMWEKGRKP-DVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 313 ~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
+.|..-... .| +...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|..-+....+.|.+++|++.+.++...
T Consensus 540 ~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999988874 44 45679999999999999999999999999887 336667777788889999999999999988665
Q ss_pred C
Q 048749 392 N 392 (536)
Q Consensus 392 ~ 392 (536)
.
T Consensus 617 ~ 617 (777)
T KOG1128|consen 617 R 617 (777)
T ss_pred h
Confidence 4
No 98
>PLN02789 farnesyltranstransferase
Probab=98.62 E-value=5.2e-05 Score=71.09 Aligned_cols=181 Identities=11% Similarity=0.027 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYK-HVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
+++.+-..+...++.++|+.++.++++.. +-+..+|+.-..++...| .+++++..++.+....+.+..+|+.....+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 33444444556677788888888877654 333445555555555555 4677777777754444556666665554455
Q ss_pred hcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc---CCh
Q 048749 269 VLGNV--YEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFK---KRI 343 (536)
Q Consensus 269 ~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~ 343 (536)
+.|.. ++++.+++.+.+.. +.+..+|+....++.+.|+++++++.++++++.+.. +...|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 55542 55666666666655 446667776666666777777777777777765443 444555544444333 111
Q ss_pred ----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048749 344 ----PEALEVLREMKNRGCLPNVTTYNSLIKHLCK 374 (536)
Q Consensus 344 ----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 374 (536)
++++++..++...... |...|+-+...+..
T Consensus 196 ~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPR-NESPWRYLRGLFKD 229 (320)
T ss_pred cccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhc
Confidence 2344444444443221 44555555444443
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=4.6e-05 Score=80.46 Aligned_cols=135 Identities=12% Similarity=0.055 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhh
Q 048749 254 GYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS-KCE---PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVT 329 (536)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 329 (536)
|-+...|-..|......++.++|.++.++.... ++. --...|.++++.-...|.-+...++|+++.+. .-...+
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 556667888888888888888888888877642 111 11246777777777777778888888888774 223456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 330 CNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
|..|...|.+.+..++|-++++.|.+.= .-....|...+..+.+.++-+.|..++.+..+.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 7888888888888888888888886541 136678888888888888888888888888764
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.60 E-value=0.00031 Score=63.48 Aligned_cols=311 Identities=14% Similarity=0.091 Sum_probs=185.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILL---NRYAAAHMVEEAIGVFDRRKEFGELDDLSAF-QNLL 230 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~ll 230 (536)
++.-.--+.+.+...|++.+|+.-|..... .|+..|.++. ..|...|+-.-|+.=+.+.++. +||-..- ..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve-~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE-GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc-CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 444555677778888888888888887762 3334454444 4677888888888878777764 5664322 1223
Q ss_pred HHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 048749 231 LWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGT 310 (536)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 310 (536)
..+.+.|.++.|..=|+.+...-+ +. |...+|..-+.... ........+..+.-.|+...
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~-s~-------------~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEP-SN-------------GLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCC-Cc-------------chhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhh
Confidence 456678888888887777543312 11 11111111110000 00112223444556777888
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 311 ALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 311 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
|+.....+.+. .+.|...|..-..+|...|++..|+.=++...+..-. ++.++..+-..+...|+.+.++...++..+
T Consensus 174 ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 88877777775 3447777777777888888888887766665544322 556666667777778888888887777776
Q ss_pred cCCCCCCcHHHHHHHHHh-------cCCC---------ChHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCChhHHH
Q 048749 391 KNGSCLPNEITFNYLLKS-------LKKP---------EEVPWVLERMERNGCKMSTD---TYNVILKLYVNWDCEDKVR 451 (536)
Q Consensus 391 ~~~~~~p~~~~~~~ll~~-------~~~~---------~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~ 451 (536)
.+ ||....-..... +... -++.+..+...+........ .+..+-.++...|++-+|+
T Consensus 252 ld----pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 252 LD----PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred cC----cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHH
Confidence 44 554322111111 1111 11112222222322111122 3334455666778888999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 452 HTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRLKG 496 (536)
Q Consensus 452 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 496 (536)
+...+..+. .|| ..++.-=..+|.-...++.|+.=|+...+.+
T Consensus 328 qqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 328 QQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 988888875 454 6777777788888888999998888887743
No 101
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.00082 Score=65.25 Aligned_cols=208 Identities=12% Similarity=0.087 Sum_probs=131.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHH--HHHHHH--hcCCHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGI--LLNRYA--AAHMVEEAI 208 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--li~~~~--~~g~~~~A~ 208 (536)
.+++++|.+..+.+.... +.+..++..-+-++.+.+++++|+.+.+.-... .+++. +=.+|| +.+..++|+
T Consensus 25 ~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred chHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHHHHcccHHHHH
Confidence 468999999999998763 667778888888899999999999777765511 12222 234454 678899999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 209 GVFDRRKEFGELDD-LSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDI--KTMNIILNGWCVLGNVYEAKRFWKDIIK 285 (536)
Q Consensus 209 ~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 285 (536)
..++ |..++ ..+...-...+.+.|++++|..+|+.+.+.-.++. ..-..++.+-. +... +.+..
T Consensus 100 k~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------~l~~-~~~q~ 166 (652)
T KOG2376|consen 100 KTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------ALQV-QLLQS 166 (652)
T ss_pred HHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------hhhH-HHHHh
Confidence 8887 33333 33555566778899999999999999743323322 22222222211 1111 12222
Q ss_pred CCCCCCHHHHHHHH---HHHHhcCCHhHHHHHHHHHHHcC-------CCCCHh-------hHHHHHHHHHhcCChHHHHH
Q 048749 286 SKCEPDSVTYATFV---NALTKKGKLGTALRLFQAMWEKG-------RKPDVV-------TCNCIIDALCFKKRIPEALE 348 (536)
Q Consensus 286 ~g~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g-------~~p~~~-------~~~~li~~~~~~g~~~~A~~ 348 (536)
....| ..+|..+. ..+...|++.+|+++++...+.+ -.-+.. +-..+...+-..|+.++|..
T Consensus 167 v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 167 VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 22233 33444443 34567899999999999884332 111111 22345556778899999999
Q ss_pred HHHHHHHCCCC
Q 048749 349 VLREMKNRGCL 359 (536)
Q Consensus 349 ~~~~m~~~g~~ 359 (536)
++.......+.
T Consensus 246 iy~~~i~~~~~ 256 (652)
T KOG2376|consen 246 IYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHhcCC
Confidence 99998877543
No 102
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=8.2e-05 Score=70.51 Aligned_cols=252 Identities=15% Similarity=0.101 Sum_probs=160.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHh---CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-----CCCCHHHHHHHHHH
Q 048749 126 VNVINRYRFDWEAAYTFFKWVSR---EGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-----DLVNEKTYGILLNR 197 (536)
Q Consensus 126 ~~~l~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~li~~ 197 (536)
+..|.+.+-++..-.++|+.+.. .++ .|... ++.-=.-..++.+++..-+.++ +.++...+...+.+
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~-~~p~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~ 283 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGG-QPPEY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRA 283 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCC-CCChH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHH
Confidence 33444444466666667766653 221 22211 1111112346677777777777 45666667777765
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 198 YAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAK 277 (536)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 277 (536)
......-..+-.++.+-.+. .-...-|..-+ .+...|.++.|+..+..+....+.|...+....+.+.+.++.++|.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~ 360 (484)
T COG4783 284 KYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAI 360 (484)
T ss_pred HhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 55444333333333332221 11222333333 3457788888888888876666778888888888888899999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 278 RFWKDIIKSKCEPD-SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 278 ~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
+.++.+.... |+ ...+-.+..+|.+.|++.+|..+++..... .+-|+..|..|..+|...|+..++..-..+
T Consensus 361 e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE---- 433 (484)
T COG4783 361 ERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE---- 433 (484)
T ss_pred HHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH----
Confidence 8888888763 44 566667778888889888888888888776 445788888888889888888887655443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 048749 357 GCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLL 406 (536)
Q Consensus 357 g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll 406 (536)
+|...|+++.|...+....+..+...|+..-+...+
T Consensus 434 --------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari 469 (484)
T COG4783 434 --------------GYALAGRLEQAIIFLMRASQQVKLGFPDWARADARI 469 (484)
T ss_pred --------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 355678888888888887776432334433333333
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=1.2e-05 Score=77.31 Aligned_cols=214 Identities=14% Similarity=0.091 Sum_probs=88.1
Q ss_pred HccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 167 GRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAET 244 (536)
Q Consensus 167 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 244 (536)
.+.|++.+|.-+|+... .+.+...|-.|......+++-..|+..+++..+.. +.|..+.-.|.-.|...|.-..|..
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHH
Confidence 34455555555555443 44444455555555555555555555555544433 3334444444444444444444444
Q ss_pred HHHHh-cCCC-----C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 048749 245 FFESE-KNEF-----G---YDIKTMNIILNGWCVLGNVYEAKRFWKDIIK-SKCEPDSVTYATFVNALTKKGKLGTALRL 314 (536)
Q Consensus 245 ~~~~~-~~~~-----~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 314 (536)
.++.. .... . ++...-+. ........+....++|-++.. .+..+|......|.-.|.-.|++++|.+-
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 44441 1000 0 00000000 111111122223333333322 22223444444444444445555555555
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 315 FQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN-VTTYNSLIKHLCKIKRMETVYEYLD 386 (536)
Q Consensus 315 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~A~~~~~ 386 (536)
|+..+.. -+-|..+||.|-..++...+.++|+..|.+..+. .|. +.+...|.-.|...|.+++|.+.|-
T Consensus 453 f~~AL~v-~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 453 FEAALQV-KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHhc-CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 5554443 1223444555555555555555555555555443 232 1222223334445555555544443
No 104
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=0.00042 Score=69.65 Aligned_cols=335 Identities=12% Similarity=0.100 Sum_probs=202.6
Q ss_pred CCCHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCC--------
Q 048749 119 TLTDDLIVNVINRY----RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLV-------- 186 (536)
Q Consensus 119 ~~~~~~~~~~l~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------- 186 (536)
..++.+-.++|... -|+.+.|.+-.+.+. +..+|..|..+|.+.++++-|.-.+-.|....
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 34555555565542 479999988777764 44699999999999999999888887776111
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHH
Q 048749 187 ---NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNII 263 (536)
Q Consensus 187 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 263 (536)
+..+=..+...-...|.+++|+.+|++-++.+ .|=..|-..|.+++|.++-+.-.. +. -..+|...
T Consensus 796 ~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DR-iH-Lr~Tyy~y 864 (1416)
T KOG3617|consen 796 QQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDR-IH-LRNTYYNY 864 (1416)
T ss_pred HhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccc-ee-hhhhHHHH
Confidence 11222223333457799999999999988754 455667788999999998765321 11 12345555
Q ss_pred HHHHHhcCCHHHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 048749 264 LNGWCVLGNVYEAKRFWKDI----------IKSK---------CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRK 324 (536)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~m----------~~~g---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 324 (536)
..-+-..++.+.|++.|++. .... -..|...|.-...-+-..|+.+.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 55555677788888777542 2111 012334444445555567888888888876544
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCCc
Q 048749 325 PDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGS------CLPN 398 (536)
Q Consensus 325 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~------~~p~ 398 (536)
|-.++...|-.|+.++|-++-++-. |......|...|-..|++.+|..+|.+...-... ...+
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~ 1009 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMK 1009 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 4566777788899999988776542 5566667889999999999999999876432100 0011
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH--------HHHHC--CCCCCHHH
Q 048749 399 EITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWE--------EMEKK--GMGPDQRS 468 (536)
Q Consensus 399 ~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~--g~~p~~~~ 468 (536)
...+|..+. ....+...+-....+.|.. +...+..|-+.|.+.+|+++-= ++... .-..|+..
T Consensus 1010 d~L~nlal~--s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1010 DRLANLALM--SGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHHHhh--cCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 111221111 1122222222233333311 2233445667777777665421 11112 22335566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 469 YTVMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
.+.-.+-++.+.++++|..++-...
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 6666666677777777777765544
No 105
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.54 E-value=0.00041 Score=66.54 Aligned_cols=86 Identities=6% Similarity=0.146 Sum_probs=63.3
Q ss_pred HHHHhhcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCC
Q 048749 110 EKALNQCELTLTDDLIVNVINRYR-FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVN 187 (536)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~l~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~ 187 (536)
++-++..+..++ ....++...+ ...+++++.++.+... ++.++..|..-|....+.++++..+.+|.+.. ...+
T Consensus 10 ~~rie~nP~di~--sw~~lire~qt~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn 85 (656)
T KOG1914|consen 10 RERIEENPYDID--SWSQLIREAQTQPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN 85 (656)
T ss_pred HHHHhcCCccHH--HHHHHHHHHccCCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 444455544333 3333343322 3789999999999876 67789999999999999999999999999987 5567
Q ss_pred HHHHHHHHHHHH
Q 048749 188 EKTYGILLNRYA 199 (536)
Q Consensus 188 ~~~~~~li~~~~ 199 (536)
...|..-+..--
T Consensus 86 lDLW~lYl~YVR 97 (656)
T KOG1914|consen 86 LDLWKLYLSYVR 97 (656)
T ss_pred HhHHHHHHHHHH
Confidence 788888776444
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.54 E-value=0.00012 Score=76.64 Aligned_cols=241 Identities=10% Similarity=0.084 Sum_probs=168.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHH
Q 048749 184 DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNII 263 (536)
Q Consensus 184 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 263 (536)
.+.+...|..|+..+...+++++|.++.+...+.. +-....|-.+...+.+.++.+++..+ .+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~ 89 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL----------------NL 89 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh----------------hh
Confidence 45677788999999999999999999998766643 22233444444456666665554443 23
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh
Q 048749 264 LNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRI 343 (536)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 343 (536)
+.......++.-+..+...|.+.+ -+..++..+..+|-+.|+.+++..+|+++.+.. +-|+.+.|.+...|... ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 333334444544444455555532 344578888999999999999999999999976 44788899999999988 99
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHH
Q 048749 344 PEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERME 423 (536)
Q Consensus 344 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~ 423 (536)
++|++++.+.... |...+++.++.+++.++.... |+.. +....+.+.+.
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~----~~d~------------d~f~~i~~ki~ 214 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN----SDDF------------DFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC----cccc------------hHHHHHHHHHH
Confidence 9999998887653 777789999999999998754 3322 12223333443
Q ss_pred H-CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 424 R-NGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLY 477 (536)
Q Consensus 424 ~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 477 (536)
. .|..--..++-.+-..|-..++++++..+++.+.+..- -|.....-++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 3 23344456777778888899999999999999998742 25566667777766
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=1.3e-05 Score=79.11 Aligned_cols=222 Identities=14% Similarity=0.130 Sum_probs=145.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048749 220 LDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFV 299 (536)
Q Consensus 220 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 299 (536)
+|--..-..+...+.+.|-...|..+|+++ ..|.-+|.+|+..|+..+|..+..+-.+. +||...|..+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333334445566677777777777777753 34666777777777777777777776662 67777777777
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 300 NALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRME 379 (536)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 379 (536)
+......-+++|+++.+....+ .-..+.....+.++++++.+.|+.-.+.+. .-..+|-.+-.+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhH
Confidence 7666666677777776654332 111111112236777777777776554421 24566766666777777777
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 048749 380 TVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEK 459 (536)
Q Consensus 380 ~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 459 (536)
.|.+.|.....-. || +...||.+-.+|.+.|+..+|...+++..+
T Consensus 537 ~av~aF~rcvtL~----Pd-------------------------------~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 537 AAVKAFHRCVTLE----PD-------------------------------NAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred HHHHHHHHHhhcC----CC-------------------------------chhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 7777777766533 33 567778888888888888888888887777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 460 KGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 460 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
.+ .-+...|...+....+-|.+++|.+.+.+|...
T Consensus 582 cn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 582 CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred cC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 65 335556666667777778888888877776653
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=0.00076 Score=64.80 Aligned_cols=222 Identities=13% Similarity=0.075 Sum_probs=126.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH--
Q 048749 134 FDWEAAYTFFKWVSREGDYSPG-SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAI-- 208 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~-- 208 (536)
++++.|++--....+. .|+ +..|+....++.-.|++++|+..|.+-. ++.+...++-+..++.......+..
T Consensus 50 ~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~ 126 (539)
T KOG0548|consen 50 GSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTK 126 (539)
T ss_pred hhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccC
Confidence 5788887766665553 444 7789999999999999999999999877 6677778888888772211000000
Q ss_pred -HHHHHHHHc---CCCCCHHHHHHHHHHHH----------hcCCHHHHHHHHHHh------c-------CCCCC------
Q 048749 209 -GVFDRRKEF---GELDDLSAFQNLLLWLC----------RYKHVEVAETFFESE------K-------NEFGY------ 255 (536)
Q Consensus 209 -~~~~~m~~~---g~~~~~~~~~~ll~~~~----------~~~~~~~a~~~~~~~------~-------~~~~~------ 255 (536)
.++...... .......+|..++..+- ...++..+...+... . ....|
T Consensus 127 p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 206 (539)
T KOG0548|consen 127 PYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHN 206 (539)
T ss_pred cHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCC
Confidence 011111000 00011112223322221 111111222111110 0 00011
Q ss_pred ------C----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048749 256 ------D----------IKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMW 319 (536)
Q Consensus 256 ------~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 319 (536)
| ..-.-.+.++.-+..+++.|++-+....+.. -++.-++....+|...|.+.++...-....
T Consensus 207 ~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~ 284 (539)
T KOG0548|consen 207 GFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAV 284 (539)
T ss_pred CCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHH
Confidence 1 1124456677778888999999998887764 345555666678888888888887777776
Q ss_pred HcCCCCCHhhHH-------HHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048749 320 EKGRKPDVVTCN-------CIIDALCFKKRIPEALEVLREMKNRGCLPN 361 (536)
Q Consensus 320 ~~g~~p~~~~~~-------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 361 (536)
+.|.. ...-|+ .+..+|.+.++++.|+..|.+....-..|+
T Consensus 285 E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~ 332 (539)
T KOG0548|consen 285 EVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD 332 (539)
T ss_pred HHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH
Confidence 66543 222222 233466677888999999988765444443
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.52 E-value=1.2e-05 Score=72.82 Aligned_cols=185 Identities=11% Similarity=-0.039 Sum_probs=105.6
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHH
Q 048749 154 PGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNE---KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDL--SAF 226 (536)
Q Consensus 154 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~ 226 (536)
.....+..+...+.+.|++++|...|+++. .+.+. .++..+..++.+.|++++|+..|+++.+..-.... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345666777777777777777777777665 22222 35666777777777888888887777764311111 133
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048749 227 QNLLLWLCRY--------KHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATF 298 (536)
Q Consensus 227 ~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 298 (536)
..+..++.+. |+.+.|.+.++.+....+.+...+..+..... ... .. ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRN------RL--------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHH------HH--------HHHHHHH
Confidence 3344444433 55666777766654333333333322211100 000 00 0011234
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 299 VNALTKKGKLGTALRLFQAMWEKGR--KPDVVTCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 299 i~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
...+.+.|++++|...++...+..- +.....+..+..++.+.|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5567777888888888877776521 123456777777888888888888877777654
No 110
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.50 E-value=0.00017 Score=73.94 Aligned_cols=215 Identities=13% Similarity=0.034 Sum_probs=148.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVF 211 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 211 (536)
.+...|+..|=...+.. ..=..+|..|...|....+...|.+.|++.- +..+...+......|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 45666777676666643 2235679999999999889999999999987 6778889999999999999999999983
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048749 212 DRRKEFG-ELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEP 290 (536)
Q Consensus 212 ~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 290 (536)
-..-+.. ...-...|....-.|.+.++...|..-|+...+--+.|...|..+..+|.+.|.+..|.++|.+.... .|
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 3222211 00111223334455678888999999998865555779999999999999999999999999888764 33
Q ss_pred CHHHHHH--HHHHHHhcCCHhHHHHHHHHHHHc------CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 291 DSVTYAT--FVNALTKKGKLGTALRLFQAMWEK------GRKPDVVTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 291 ~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
+. +|.. ..-..+..|++.+++..+...... +..--..++-.+...+.-.|-..+|.+++++-
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 32 2332 233456789999999999887654 11112233333333444445444555555443
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.50 E-value=2.6e-05 Score=70.70 Aligned_cols=188 Identities=8% Similarity=-0.109 Sum_probs=126.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHH---
Q 048749 185 LVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDL---SAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIK--- 258 (536)
Q Consensus 185 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 258 (536)
......+-.+...+...|++++|...|+++.... +.+. .++..+..++.+.|+++.|...++...+..+.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 4556678888888888999999999998887654 2222 45667778888889999999988886443332222
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhH
Q 048749 259 TMNIILNGWCVL--------GNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTC 330 (536)
Q Consensus 259 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 330 (536)
++..+..++... |+.++|.+.|+.+.+.. +-+...+..+..... .... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~------~~--------~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR------LA--------GKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH------HH--------HHH
Confidence 455555555544 67788888888887653 122223322221111 0000 00 011
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 331 NCIIDALCFKKRIPEALEVLREMKNRGC-LP-NVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
..+...|.+.|++++|...++...+... .| ....+..+..++.+.|++++|..+++.+....
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2456678899999999999999986532 12 35788899999999999999999999887654
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.49 E-value=3.6e-05 Score=67.03 Aligned_cols=153 Identities=12% Similarity=0.038 Sum_probs=70.1
Q ss_pred HHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048749 161 AILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKH 238 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 238 (536)
.+-..+.-.|+-+....+..... .+.|....+..+....+.|++.+|+..|++..... ++|..+|+.+.-+|.+.|+
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 33344444444444444444433 23333344444555555555555555555544433 4444455555555555555
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 048749 239 VEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLF 315 (536)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 315 (536)
++.|..-|.+..+-.+-+....|.|.-.|.-.|+.+.|..++......+ .-|...-..+.......|++++|.++.
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555544444333233344444444444444555555555554444333 223334444444444455555554443
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.49 E-value=3.5e-05 Score=67.07 Aligned_cols=159 Identities=13% Similarity=0.067 Sum_probs=101.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 048749 192 GILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLG 271 (536)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 271 (536)
..+-..+...|+-+....+....... .+.|....+.++....+.|++..|...+.+....-++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44555566666666666655553332 23444455556677777777777777777766555677777777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 048749 272 NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLR 351 (536)
Q Consensus 272 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 351 (536)
++++|..-|.+..+.. .-+....+.|.-.+.-.|+.+.|..++......+.. |..+-..+.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777777777766653 223445566666666677777777777766665332 55556666666777777777776655
Q ss_pred HH
Q 048749 352 EM 353 (536)
Q Consensus 352 ~m 353 (536)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
No 114
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.44 E-value=0.0026 Score=63.90 Aligned_cols=341 Identities=14% Similarity=0.084 Sum_probs=220.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC--CCCCHHHHHHH
Q 048749 186 VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNE--FGYDIKTMNII 263 (536)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l 263 (536)
-+...|..+.-+....|+++.+.+.|++....- --....|..+-..+...|.-..|..+++..... -++|...+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 466778888888888888888888888876532 345567777888888888888888888774222 23444444444
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhcC-----------CHhHHHHHHHHHHHcC-CCCC
Q 048749 264 LNGWC-VLGNVYEAKRFWKDIIKS--KC--EPDSVTYATFVNALTKKG-----------KLGTALRLFQAMWEKG-RKPD 326 (536)
Q Consensus 264 i~~~~-~~g~~~~A~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~g-~~p~ 326 (536)
-..|. +.+.+++++.+-.+.+.. +. ......|..+.-+|...- ...++++.+++..+.+ -.|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 44444 367777777777666651 11 122334444444444321 1356777888877753 3454
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------
Q 048749 327 VVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGS------------ 394 (536)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~------------ 394 (536)
...|.++ -|+..++++.|.+...+..+.+..-+...|..+.-.+...+++.+|+.+.+...+.-+.
T Consensus 480 ~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 480 VIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred HHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 4444443 47778899999999999998876778999999999999999999999999887665421
Q ss_pred -----CCCcHHHHHHHHHhcC--------------------------CCChHHH----HHHH----HHHCC---------
Q 048749 395 -----CLPNEITFNYLLKSLK--------------------------KPEEVPW----VLER----MERNG--------- 426 (536)
Q Consensus 395 -----~~p~~~~~~~ll~~~~--------------------------~~~~a~~----~~~~----~~~~~--------- 426 (536)
..--..|...++.-+. ...++.+ +... ....|
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 0000111111111111 0111111 1111 11111
Q ss_pred CC--CC------HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048749 427 CK--MS------TDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMV 498 (536)
Q Consensus 427 ~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 498 (536)
.. |+ ...|....+.+.+.+..++|...+.+..... .-....|......+...|.+++|.+.|..... +.
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ld 714 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LD 714 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cC
Confidence 11 11 2345566778888999999998888777652 23455566666677888999999999998876 67
Q ss_pred CcHHH-HHHHHHHHHhhhhhhhhhH--HHHHhhhccC
Q 048749 499 PEPRT-GILVNDMNIKLKERGEQGK--KVIKLTSLGL 532 (536)
Q Consensus 499 p~~~t-~~~l~~~~~~~~~~~~a~~--~~~~~~~~g~ 532 (536)
|+.+- ...+..++.+.|+..-+.+ .++.+.+.++
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 87655 8999999999998887777 7777766654
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=1.2e-05 Score=77.34 Aligned_cols=247 Identities=13% Similarity=0.056 Sum_probs=175.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 197 RYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEA 276 (536)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 276 (536)
-+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+--+.+..+.-.|.-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 4568899999999999988876 667889999999999999999999999997666677899999999999999999999
Q ss_pred HHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-cCCCCCHhhHHHHHHHHHhcCChHHHH
Q 048749 277 KRFWKDIIKSKCE--------PDSVTYATFVNALTKKGKLGTALRLFQAMWE-KGRKPDVVTCNCIIDALCFKKRIPEAL 347 (536)
Q Consensus 277 ~~~~~~m~~~g~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~ 347 (536)
++.++.-+....+ ++...-.. ..+.....+....++|-++.. .+..+|+.++..|--.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999887654311 00000000 122223345566666666654 455577788888888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcH--HHHHHHHHhc--CCCChHHHHHHHH-
Q 048749 348 EVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNE--ITFNYLLKSL--KKPEEVPWVLERM- 422 (536)
Q Consensus 348 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~--~~~~~ll~~~--~~~~~a~~~~~~~- 422 (536)
+.|+........ |..+||-|...++...+.++|+.-|.+..+. .|+. .-||.-|... +...+|.+.|-..
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL----qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL----QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc----CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999876433 7889999999999999999999999999984 4655 3466555543 3445555433322
Q ss_pred --HHCC------CCCCHHHHHHHHHHHHccCChhHHH
Q 048749 423 --ERNG------CKMSTDTYNVILKLYVNWDCEDKVR 451 (536)
Q Consensus 423 --~~~~------~~~~~~~~~~li~~~~~~g~~~~A~ 451 (536)
.+.+ ..++...|..|=.++.-.++.|.+.
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 2221 1123345555555555555555433
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=0.0012 Score=62.79 Aligned_cols=206 Identities=15% Similarity=0.091 Sum_probs=134.2
Q ss_pred CHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 048749 238 HVEVAETFFESEK---NEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRL 314 (536)
Q Consensus 238 ~~~~a~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 314 (536)
++.+++..-+.++ ..-.|+...+...+.+......-..+..++.+..+. .-...-|.. .-.+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHHHH
Confidence 3444554444543 223466666666666544433333333333222221 112223333 3345577888888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048749 315 FQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN-VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNG 393 (536)
Q Consensus 315 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 393 (536)
++.+... .+-|++......+.+.+.++.++|.+.++.+... .|+ ...+-.+.++|.+.|++.+|..+++......
T Consensus 329 l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~- 404 (484)
T COG4783 329 LQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND- 404 (484)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-
Confidence 8887775 3445666667778888888888888888888775 344 5555667778888888888888888876655
Q ss_pred CCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048749 394 SCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMI 473 (536)
Q Consensus 394 ~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 473 (536)
+-|...|..|..+|...|+..++.....+
T Consensus 405 ----------------------------------p~dp~~w~~LAqay~~~g~~~~a~~A~AE----------------- 433 (484)
T COG4783 405 ----------------------------------PEDPNGWDLLAQAYAELGNRAEALLARAE----------------- 433 (484)
T ss_pred ----------------------------------CCCchHHHHHHHHHHHhCchHHHHHHHHH-----------------
Confidence 44778899999999999988887765443
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 048749 474 HGLYDKGRLEDALSYFHEMRLKGMVPEPRT 503 (536)
Q Consensus 474 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 503 (536)
+|...|+++.|...+....+. ++++..+
T Consensus 434 -~~~~~G~~~~A~~~l~~A~~~-~~~~~~~ 461 (484)
T COG4783 434 -GYALAGRLEQAIIFLMRASQQ-VKLGFPD 461 (484)
T ss_pred -HHHhCCCHHHHHHHHHHHHHh-ccCCcHH
Confidence 456789999999988888776 3334333
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.39 E-value=9.5e-05 Score=64.44 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=5.0
Q ss_pred hcCCHhHHHHHHHH
Q 048749 304 KKGKLGTALRLFQA 317 (536)
Q Consensus 304 ~~g~~~~a~~~~~~ 317 (536)
..|++++|...|+.
T Consensus 156 ~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 156 MQADYAQAIELWQK 169 (198)
T ss_pred HcCCHHHHHHHHHH
Confidence 33333333333333
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.38 E-value=0.00015 Score=75.14 Aligned_cols=181 Identities=10% Similarity=0.022 Sum_probs=140.0
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048749 152 YSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNL 229 (536)
Q Consensus 152 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 229 (536)
+..++..+-.|..+..+.|++++|+.+++... .+.+...+..+..++.+.+++++|+..+++..... +.+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 67789999999999999999999999999988 66777888999999999999999999999998865 5567777788
Q ss_pred HHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 048749 230 LLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLG 309 (536)
Q Consensus 230 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 309 (536)
..++.+.|++++|..+|+++....+.+..++..+...+.+.|+.++|...|+...+.- .+....|+..+ +++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHH
Confidence 8889999999999999999755545668899999999999999999999999987753 33445555443 3344
Q ss_pred HHHHHHHHHHHcC----CCCCHhhHHHHHHHHHhc
Q 048749 310 TALRLFQAMWEKG----RKPDVVTCNCIIDALCFK 340 (536)
Q Consensus 310 ~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~ 340 (536)
.-..+++++.-.+ ..........+|.-|.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 4455566554432 333344455555555544
No 119
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.0048 Score=63.85 Aligned_cols=199 Identities=14% Similarity=0.092 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048749 225 AFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTK 304 (536)
Q Consensus 225 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 304 (536)
.|..+..+-.+.|.+.+|.+-|-+. .|+..|.-+++...+.|.+++-.+++....+..-+|.+. +.||-+|++
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAk 1178 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHH
Confidence 3444444444444444444333221 133444444444444444444444443333332222222 234444444
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 305 KGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEY 384 (536)
Q Consensus 305 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~ 384 (536)
.+++.+.++++ .-|+......+.+-|...|.++.|.-+|. ++.-|..|...+...|++..|.+.
T Consensus 1179 t~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1179 TNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred hchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444333322 12343444444444444444444443332 333455555666666666666655
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 048749 385 LDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEE 456 (536)
Q Consensus 385 ~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (536)
-++. .+..||-.+--+|...++.. +..|-...+.....-..-++..|-..|-+++.+.+++.
T Consensus 1243 aRKA--------ns~ktWK~VcfaCvd~~EFr--lAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1243 ARKA--------NSTKTWKEVCFACVDKEEFR--LAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred hhhc--------cchhHHHHHHHHHhchhhhh--HHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 4433 24456666655554433221 11111122223334444555555555555555555443
No 120
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.35 E-value=0.003 Score=60.85 Aligned_cols=367 Identities=10% Similarity=0.069 Sum_probs=191.1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048749 153 SPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLL 230 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 230 (536)
+.|..+|+.||.-+... .++++++.++++. .+-....|..-|..-.+..+++...++|.+.+..- .+...|...+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 66999999999988776 9999999999998 56677899999999999999999999999988754 4455666666
Q ss_pred HHHHh-cCCHHH----HHHHHHHh--cCCCC-CCHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCCC---
Q 048749 231 LWLCR-YKHVEV----AETFFESE--KNEFG-YDIKTMNIILNG---------WCVLGNVYEAKRFWKDIIKSKCEP--- 290 (536)
Q Consensus 231 ~~~~~-~~~~~~----a~~~~~~~--~~~~~-~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~~--- 290 (536)
.--.+ .|.... -.+.|+-. +.++. .+...|+..+.- |....+++...++++.+...-+.-
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 54333 233333 23334443 23332 233446665543 233445667777788777532110
Q ss_pred ---CHHHHHHHHHHHH-------hcCCHhHHHHHHHHHHHc--CCCCCHh---------------hHHHHHHH-------
Q 048749 291 ---DSVTYATFVNALT-------KKGKLGTALRLFQAMWEK--GRKPDVV---------------TCNCIIDA------- 336 (536)
Q Consensus 291 ---~~~~~~~li~~~~-------~~g~~~~a~~~~~~m~~~--g~~p~~~---------------~~~~li~~------- 336 (536)
|-.+|..=|+... +...+..|.++++++... |+..... .|..+|..
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 1111211111111 223355666666665442 3211111 12112111
Q ss_pred ------------------------------------------HHhcCC-------hHHHHHHHHHHHHCCCCCCHHHHHH
Q 048749 337 ------------------------------------------LCFKKR-------IPEALEVLREMKNRGCLPNVTTYNS 367 (536)
Q Consensus 337 ------------------------------------------~~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~ 367 (536)
+...|+ .+++..+++...+.-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 2233333333222111111112211
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcC---CCChHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 048749 368 LIKHLCKI---KRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLK---KPEEVPWVLERMERNGCKM-STDTYNVILKL 440 (536)
Q Consensus 368 li~~~~~~---~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~---~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~ 440 (536)
+.+-=-.. +..+.....+++....-. ..|+ .+|...+.... -...|..+|.+..+.+..+ ++.++++++.-
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~-~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIED-IDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhc-cCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 11100000 013333333333333221 1122 22333333322 2345566777777766555 56666777776
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH--HHHHHHHHHhhhhhh
Q 048749 441 YVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRT--GILVNDMNIKLKERG 518 (536)
Q Consensus 441 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~l~~~~~~~~~~~ 518 (536)
||. ++..-|.++|+.-.+. +.-+..--...++-+..-|+-..|..+|++.+..++.||... |.-+++.=...|+..
T Consensus 412 ~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 664 5666777777764433 122233334555666666776777777777777766665433 666666666666666
Q ss_pred hhhHHHHH
Q 048749 519 EQGKKVIK 526 (536)
Q Consensus 519 ~a~~~~~~ 526 (536)
.+.++-.+
T Consensus 490 si~~lekR 497 (656)
T KOG1914|consen 490 SILKLEKR 497 (656)
T ss_pred HHHHHHHH
Confidence 55555444
No 121
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=0.0023 Score=64.56 Aligned_cols=31 Identities=6% Similarity=-0.057 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 048749 429 MSTDTYNVILKLYVNWDCEDKVRHTWEEMEK 459 (536)
Q Consensus 429 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 459 (536)
.|+...+.-.+.++...++++|..++-..++
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4566666666667777777777776655544
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.34 E-value=2.2e-05 Score=68.47 Aligned_cols=124 Identities=8% Similarity=0.154 Sum_probs=98.8
Q ss_pred cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC--HHHHH
Q 048749 169 ARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL-CRYKH--VEVAE 243 (536)
Q Consensus 169 ~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~-~~~~~--~~~a~ 243 (536)
.++.+++...++... .+.+...|..+...|...|++++|+..|++..+.. +.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 566677777777655 67888899999999999999999999999888866 55677777777764 66676 58999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048749 244 TFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVT 294 (536)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 294 (536)
+++++.....+.+..++..+...+.+.|++++|...|+.+.+.. +|+..-
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r 180 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccH
Confidence 99999766657788889999999999999999999999988765 445433
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.0015 Score=57.27 Aligned_cols=244 Identities=11% Similarity=0.070 Sum_probs=118.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEA-IGVFD 212 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~ 212 (536)
|++..++..-...... +.+...--.+-.+|...|++.....-...-. .+.......+.......++.+.- -++.+
T Consensus 22 Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E 97 (299)
T KOG3081|consen 22 GNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISEIKEGK-ATPLQAVRLLAEYLELESNKKSILASLYE 97 (299)
T ss_pred hHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccccccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHH
Confidence 4555554444433222 1233444444555555555433322222111 12222233232333333333322 23344
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048749 213 RRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDS 292 (536)
Q Consensus 213 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 292 (536)
.+.......+......-...|+..|++++|++..+... +..+...=+..+.+..+++-|.+.+++|.+-. +.
T Consensus 98 ~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed 169 (299)
T KOG3081|consen 98 LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-----NLEAAALNVQILLKMHRFDLAEKELKKMQQID---ED 169 (299)
T ss_pred HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hH
Confidence 44444333443333344455666777777776665511 33333333344456666677777777776432 34
Q ss_pred HHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048749 293 VTYATFVNALTK----KGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSL 368 (536)
Q Consensus 293 ~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 368 (536)
.|.+-|..++.+ .+++.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++........ +..+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHH
Confidence 455545554443 34466667777776654 5566666666666666777777777777766655333 34444444
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHhc
Q 048749 369 IKHLCKIKRM-ETVYEYLDEMEQK 391 (536)
Q Consensus 369 i~~~~~~~~~-~~A~~~~~~m~~~ 391 (536)
|.+-...|.. +-..+.+.+....
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhc
Confidence 4433333433 3333444444443
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.32 E-value=7.4e-05 Score=77.31 Aligned_cols=180 Identities=8% Similarity=0.028 Sum_probs=137.1
Q ss_pred CCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHH
Q 048749 117 ELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGIL 194 (536)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 194 (536)
....+...++..+....|.+++|+.+++.+.... +-+......++.++.+.+++++|+..+++.. .+.+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 3334444555656666789999999999999863 5567888999999999999999999999988 66777888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 195 LNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVY 274 (536)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 274 (536)
..++.+.|++++|.++|++....+ +.+..++..+..++.+.|+.++|...|+.......+....|+.++. ++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~~ 233 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DLN 233 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HHH
Confidence 999999999999999999999843 4558899999999999999999999999975555666666665543 344
Q ss_pred HHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhc
Q 048749 275 EAKRFWKDIIKSK----CEPDSVTYATFVNALTKK 305 (536)
Q Consensus 275 ~A~~~~~~m~~~g----~~~~~~~~~~li~~~~~~ 305 (536)
.-..+++.+.-++ ....+.+...+|.-+.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 4455566654433 233344555555555544
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.0008 Score=58.40 Aligned_cols=187 Identities=14% Similarity=0.140 Sum_probs=125.2
Q ss_pred CCHHHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 202 HMVEEAIGVFDRRKE---FG-ELDDLS-AFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEA 276 (536)
Q Consensus 202 g~~~~A~~~~~~m~~---~g-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 276 (536)
.+.++.++++..+.. .| ..++.. .|-.++-+....|+.+.|..+++.+...++-+..+-..-.--+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 456777777776653 23 445544 4555666777788888888888887766654444333222234457888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 277 KRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 277 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
+++++.+.+.+ +-|.+++--=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 88888888776 556667766666666677777787777777776 6668888888888888888888888888888654
Q ss_pred CCCCC-HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC
Q 048749 357 GCLPN-VTTYNSLIKHLCKIK---RMETVYEYLDEMEQKN 392 (536)
Q Consensus 357 g~~p~-~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~ 392 (536)
.|. ...+..+...+.-.| +++-|.++|.+..+..
T Consensus 184 --~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 184 --QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred --CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 343 333344444443333 4666777777776654
No 126
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.31 E-value=1.2e-06 Score=52.26 Aligned_cols=33 Identities=42% Similarity=0.847 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 048749 468 SYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPE 500 (536)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 500 (536)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00013 Score=63.59 Aligned_cols=173 Identities=13% Similarity=0.059 Sum_probs=112.4
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048749 140 YTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGE 219 (536)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 219 (536)
-.+.+|+.... ...+......-...|...|++++|++..... .+......=+..+.+..+++-|.+.+++|.+.
T Consensus 93 ~~l~E~~a~~~-~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~---~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 93 ASLYELVADST-DGSNLIDLLLAAIIYMHDGDFDEALKALHLG---ENLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHHHhhc-cchhHHHHHHhhHHhhcCCChHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 44566665544 3444455555566788888888888888873 34445555556677778888888888888863
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048749 220 LDDLSAFQNLLLWLCR----YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTY 295 (536)
Q Consensus 220 ~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 295 (536)
.+..|.+.|..++.+ .+.+.+|.-+|+++..+.+|+..+.|-...++...|++++|..+++...... ..+..+.
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL 244 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETL 244 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHH
Confidence 455566666666544 3457777778888777777788777777777777888888888887777665 3345555
Q ss_pred HHHHHHHHhcCCHh-HHHHHHHHHHH
Q 048749 296 ATFVNALTKKGKLG-TALRLFQAMWE 320 (536)
Q Consensus 296 ~~li~~~~~~g~~~-~a~~~~~~m~~ 320 (536)
..+|-.-...|... -..+.+.+++.
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 55554444445443 33444455544
No 128
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.30 E-value=9.9e-05 Score=72.96 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=63.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChH
Q 048749 265 NGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIP 344 (536)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 344 (536)
.+......+.+|+.+++.+.+.+. -..-|..+..-|+..|+++.|.++|-+. ..++-.|.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 344455666666666666655432 2234556667777777777777776432 23455667777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 345 EALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDE 387 (536)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 387 (536)
.|.++-.+.. |.......|-+-..-.-+.|++.+|.++|-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 7776655543 2233444555544555556666666655543
No 129
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.28 E-value=0.00091 Score=66.46 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=26.5
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 438 LKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEM 492 (536)
Q Consensus 438 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 492 (536)
|.+|-+.|..|..+++.++-... .-..|-..+..-|-..|+.+.|.+-|-+.
T Consensus 857 iqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 44555555555555544432211 01234445555666677777777665443
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.27 E-value=5.7e-05 Score=62.16 Aligned_cols=90 Identities=9% Similarity=-0.024 Sum_probs=50.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048749 159 FNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRY 236 (536)
Q Consensus 159 ~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 236 (536)
+..+...+.+.|++++|...|+... .+.+...|..+..++.+.|++++|+..|++..+.. +.+..++..+..++.+.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 3344555555666666666665554 44455555556666666666666666666655543 34455555555555555
Q ss_pred CCHHHHHHHHHHh
Q 048749 237 KHVEVAETFFESE 249 (536)
Q Consensus 237 ~~~~~a~~~~~~~ 249 (536)
|+.++|...|+..
T Consensus 106 g~~~eAi~~~~~A 118 (144)
T PRK15359 106 GEPGLAREAFQTA 118 (144)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555553
No 131
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.26 E-value=0.0022 Score=66.11 Aligned_cols=395 Identities=12% Similarity=0.016 Sum_probs=223.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CC--CCHHHHHHHHHHHHh
Q 048749 125 IVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DL--VNEKTYGILLNRYAA 200 (536)
Q Consensus 125 ~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~--~~~~~~~~li~~~~~ 200 (536)
.++-+.+.-.+...|.+.|+.+.+-+ ..+...+....+.|++...++.|..+.-... .+ .-...|....-.|..
T Consensus 497 ~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe 574 (1238)
T KOG1127|consen 497 FLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE 574 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccC
Confidence 34433333237788899999887764 5578889999999999999999998844333 11 122334445556778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 201 AHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFW 280 (536)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 280 (536)
.++...|+.-|+...+.. +.|...|..+..+|.++|++..|.++|.+...--|.+...-.-....-+..|.+.+|...+
T Consensus 575 a~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred ccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 899999999999988766 6678899999999999999999999998854332444444444445566789999999988
Q ss_pred HHHHHC------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-------HcCCCCCHhhHHHHHHHHHhcCChH---
Q 048749 281 KDIIKS------KCEPDSVTYATFVNALTKKGKLGTALRLFQAMW-------EKGRKPDVVTCNCIIDALCFKKRIP--- 344 (536)
Q Consensus 281 ~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-------~~g~~p~~~~~~~li~~~~~~g~~~--- 344 (536)
...+.. +..--..++..+...+.-.|-...+..+++.-+ ......+...|-.+-++|.-.-..+
T Consensus 654 ~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~ 733 (1238)
T KOG1127|consen 654 GLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSI 733 (1238)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccc
Confidence 777642 111112333333333443443333333333322 2211122222222222211000000
Q ss_pred ---HHHHHHH-HHHHCCCC--------------------CCHHHHHHHHHHHHh----c----CCHHHHHHHHHHHHhcC
Q 048749 345 ---EALEVLR-EMKNRGCL--------------------PNVTTYNSLIKHLCK----I----KRMETVYEYLDEMEQKN 392 (536)
Q Consensus 345 ---~A~~~~~-~m~~~g~~--------------------p~~~~~~~li~~~~~----~----~~~~~A~~~~~~m~~~~ 392 (536)
....+|. +....+.- .+..+|..|+..|.+ . .+...|...+++.++.
T Consensus 734 vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L- 812 (1238)
T KOG1127|consen 734 VNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL- 812 (1238)
T ss_pred hHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-
Confidence 0011111 11111111 123344444443333 1 1334677777777664
Q ss_pred CCCCCcHHHHHHHHHh--cCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHH
Q 048749 393 GSCLPNEITFNYLLKS--LKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYT 470 (536)
Q Consensus 393 ~~~~p~~~~~~~ll~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 470 (536)
...+..+|+.|=-. -+...-+.-.|-.-... .+....+|..+.-.+.+..+++-|...|....... +-|...|-
T Consensus 813 --~ann~~~WnaLGVlsg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~Wl 888 (1238)
T KOG1127|consen 813 --CANNEGLWNALGVLSGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWL 888 (1238)
T ss_pred --hhccHHHHHHHHHhhccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHH
Confidence 23455556544222 12222222222222221 24466778888888889999999999999887752 22455565
Q ss_pred HHHHHHHhcCCHHHHHHHHHH--HH--HCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 048749 471 VMIHGLYDKGRLEDALSYFHE--MR--LKGMVPEPRTGILVNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 471 ~li~~~~~~g~~~~A~~~~~~--m~--~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~ 527 (536)
.........|+.-++..+|.. .. ..|-.|+..-+..........|+.++-.....++
T Consensus 889 G~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 889 GEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 544445566877778877765 22 2244555555556666666666655544444443
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.24 E-value=0.001 Score=69.88 Aligned_cols=256 Identities=7% Similarity=-0.002 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048749 222 DLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNA 301 (536)
Q Consensus 222 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 301 (536)
+...+..|+..+...+++++|.++.+......+-....|..+...+.+.++.+++..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 3556777777777788888888777764443343444444444455555554444333 23333
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 302 LTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381 (536)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A 381 (536)
.....++..+..++..|...+ -+...+-.+..+|-+.|+.++|..+++++.+... -|+.+.|.+...|... ++++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHH
Confidence 334444544444555555532 2445778889999999999999999999998873 3788999999999999 99999
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-
Q 048749 382 YEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK- 460 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 460 (536)
.+++.+..... -...+...+.++|..+...... +++.-..+.+.+...
T Consensus 169 ~~m~~KAV~~~--------------i~~kq~~~~~e~W~k~~~~~~~-----------------d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 169 ITYLKKAIYRF--------------IKKKQYVGIEEIWSKLVHYNSD-----------------DFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHHHHHHH--------------HhhhcchHHHHHHHHHHhcCcc-----------------cchHHHHHHHHHHhhh
Confidence 99999887642 1112445667777777765321 233333344444432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 461 GMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 461 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
|..--..++-.+-..|-..++++++..+++..++..-. |.....-++..+...-....-.+.+.++..+
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l 286 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYKEKYKDHSLLEDYLKMSDI 286 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHHHHccCcchHHHHHHHhcc
Confidence 33445566777777888899999999999999985222 3444555555555333333444444555443
No 133
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.21 E-value=2.9e-06 Score=50.19 Aligned_cols=33 Identities=27% Similarity=0.580 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048749 467 RSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVP 499 (536)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 499 (536)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 134
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.20 E-value=7.5e-05 Score=61.48 Aligned_cols=93 Identities=12% Similarity=-0.138 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 048749 193 ILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGN 272 (536)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 272 (536)
.....+...|++++|...|+...... +.+...+..+..++.+.|++++|...|+......+.+...+..+..++.+.|+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 34444445555555555555554433 33444444555555555555555555555333334444455555555555555
Q ss_pred HHHHHHHHHHHHHC
Q 048749 273 VYEAKRFWKDIIKS 286 (536)
Q Consensus 273 ~~~A~~~~~~m~~~ 286 (536)
.++|...|+...+.
T Consensus 108 ~~eAi~~~~~Al~~ 121 (144)
T PRK15359 108 PGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555554443
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.18 E-value=9.5e-05 Score=60.38 Aligned_cols=91 Identities=16% Similarity=0.063 Sum_probs=38.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 229 LLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL 308 (536)
Q Consensus 229 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 308 (536)
+...+...|++++|...++......+.+...|..+...+.+.|++++|..+++...+.+ +.+...+..+...+...|++
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCH
Confidence 33344444444444444444322223344444444444444444444444444443332 22333333344444444444
Q ss_pred hHHHHHHHHHHH
Q 048749 309 GTALRLFQAMWE 320 (536)
Q Consensus 309 ~~a~~~~~~m~~ 320 (536)
++|.+.|+...+
T Consensus 102 ~~A~~~~~~al~ 113 (135)
T TIGR02552 102 ESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 136
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.17 E-value=0.0063 Score=60.39 Aligned_cols=338 Identities=11% Similarity=0.061 Sum_probs=185.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHH------------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048749 153 SPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEK------------TYGILLNRYAAAHMVEEAIGVFDRRKEFGEL 220 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 220 (536)
.|.+..|..+...-.+.-.++.|+..|-+..+-+... .-.+=+.+ --|.+++|.++|-+|.+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 4778899999988888888888888887776222221 11122222 2488999999998888765
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048749 221 DDLSAFQNLLLWLCRYKHVEVAETFFESEKNEF--GYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATF 298 (536)
Q Consensus 221 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 298 (536)
..+..+.+.|++-.+.++++.-..+. ..-..+|+.+.+.++....+++|.+.+..-.. -...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 45667778888877777766532221 22345788888888888888888887755321 1124
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 299 VNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRM 378 (536)
Q Consensus 299 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 378 (536)
+.++.+..++++-+.+...+ +-+....-.+.+++.+.|.-++|.+.|-+.-. |. +-+..|...++|
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHHHHH
Confidence 55555555555544443332 22444555566666666666666655533211 11 223455556666
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHH-----H------Hh------cCCCChHHHHHHHHHH----CCCCCCH----HH
Q 048749 379 ETVYEYLDEMEQKNGSCLPNEITFNYL-----L------KS------LKKPEEVPWVLERMER----NGCKMST----DT 433 (536)
Q Consensus 379 ~~A~~~~~~m~~~~~~~~p~~~~~~~l-----l------~~------~~~~~~a~~~~~~~~~----~~~~~~~----~~ 433 (536)
.+|.++-+... .|...|.-+- | .+ -++.=+|-+++.+|.+ .+.++-. .+
T Consensus 895 ~~avelaq~~~------l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYV 968 (1189)
T KOG2041|consen 895 GEAVELAQRFQ------LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYV 968 (1189)
T ss_pred HHHHHHHHhcc------chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHH
Confidence 66665554331 1222221110 0 00 0222234444444433 2222211 11
Q ss_pred HHH-HHHHH----------HccCChhHHHHHHHHHHHC-------CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 048749 434 YNV-ILKLY----------VNWDCEDKVRHTWEEMEKK-------GMGPDQRSYT--VMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 434 ~~~-li~~~----------~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
..+ |+.-+ -+.|..++|..+++...-. +.--....|. .|..--...|.++.|+..--.+.
T Consensus 969 L~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~ 1048 (1189)
T KOG2041|consen 969 LGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILS 1048 (1189)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhc
Confidence 111 11111 1245556666554433211 0001223344 34444567788888887654444
Q ss_pred HC-CCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 494 LK-GMVPEPRTGILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 494 ~~-g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
+- .+-|....|.++.-+.+....++.-.+.+.++.+.
T Consensus 1049 DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1049 DYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred cHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 32 46677778888888877777777666666666543
No 137
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=4.4e-06 Score=49.75 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDL 223 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 223 (536)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999973
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.0013 Score=57.16 Aligned_cols=186 Identities=11% Similarity=0.009 Sum_probs=135.1
Q ss_pred CCHHHHHHHHHHHHhCC--C-CCCCHHH-HHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 134 FDWEAAYTFFKWVSREG--D-YSPGSNV-FNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEA 207 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~--~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A 207 (536)
.++++.++++..+.... + ..++..+ |..++-+....|+.+.|..+++.+. .+.+..+-..-.-.+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 47788888887775432 1 4455444 6666677778999999999998876 323333322223335567899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 208 IGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK 287 (536)
Q Consensus 208 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 287 (536)
+++|+.+.+.+ +.|..++..=+...-..|.--+|.+-+....+.+..|...|.-+.+.|...|++++|.-.++++.-..
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 99999999877 67777887777777778887788888888777788899999999999999999999999999998764
Q ss_pred CCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHc
Q 048749 288 CEPDSVTYATFVNALTKKG---KLGTALRLFQAMWEK 321 (536)
Q Consensus 288 ~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~ 321 (536)
|-+...+..+...+...| +...+.++|.+..+.
T Consensus 185 -P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 185 -PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred -CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 344555556666555544 355677777777764
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.06 E-value=0.00018 Score=58.70 Aligned_cols=97 Identities=13% Similarity=-0.019 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
.....+...+...|++++|.+.|+.....+ +.+...+..+...+.+.|+++.|..+++......+.+...+..+...|.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 334444555555566666666665555543 3345555555555666666666666666543333445555656666666
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 048749 269 VLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~~ 286 (536)
..|++++|...|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666554
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=7e-06 Score=48.49 Aligned_cols=33 Identities=36% Similarity=0.416 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELD 221 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 221 (536)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 141
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.02 E-value=0.011 Score=53.89 Aligned_cols=189 Identities=12% Similarity=-0.039 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEK-TYGILLNRYAAAHMVEEAIGVF 211 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 211 (536)
+.+..|+.-|..+++-+ +.+-.++..-...|...|+-..|+.=|++.. ..||-. ..-.-...+.+.|.+++|..=|
T Consensus 52 ~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF 129 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADF 129 (504)
T ss_pred hhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHH
Confidence 56777777777766532 3334445555667777787777777777665 334421 1222234567788888888888
Q ss_pred HHHHHcCCCC--CHHHH------------HHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 212 DRRKEFGELD--DLSAF------------QNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAK 277 (536)
Q Consensus 212 ~~m~~~g~~~--~~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 277 (536)
+..++..... ....+ ...+..+...|+...|......+.+-.+.|...+..-..+|...|++..|+
T Consensus 130 ~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI 209 (504)
T KOG0624|consen 130 DQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAI 209 (504)
T ss_pred HHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHH
Confidence 8877654211 11111 122334456677777877777766666777778888888888888888887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH
Q 048749 278 RFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV 327 (536)
Q Consensus 278 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 327 (536)
.-++...+.. .-+..++..+-..+...|+.+.++...++..+ +.||-
T Consensus 210 ~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdH 256 (504)
T KOG0624|consen 210 HDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDH 256 (504)
T ss_pred HHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcch
Confidence 7777665544 33455566666777778888887777777666 34554
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.98 E-value=0.00032 Score=67.18 Aligned_cols=129 Identities=15% Similarity=0.135 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048749 256 DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIID 335 (536)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 335 (536)
+......|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++.+..+. .+.+......-..
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAE 242 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 33445556666667888999999999988764 44 3445777777788888899998888865 3336666777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 336 ALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
.+.+.++++.|+.+.+++.+.... +..+|..|..+|.+.|+++.|+..++.+..
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888999999999999999876322 566899999999999999999999988754
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.96 E-value=0.00032 Score=67.19 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=60.6
Q ss_pred HHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 164 DVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVA 242 (536)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 242 (536)
..+...++++.|+.+|+++. ..|+ ....+++.+...++..+|++++++..+.. +.+...+..-...|.+.++.+.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 33344556666666666655 2222 33345555555555556666655555432 33444444444455555555555
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 243 ETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDI 283 (536)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 283 (536)
..+.++...-.|.+..+|..|..+|.+.|+++.|+..++.+
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555544433444455555555555555555555555444
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.95 E-value=9.3e-06 Score=46.75 Aligned_cols=30 Identities=40% Similarity=0.794 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048749 468 SYTVMIHGLYDKGRLEDALSYFHEMRLKGM 497 (536)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 497 (536)
+|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.91 E-value=0.00087 Score=55.36 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=9.7
Q ss_pred HHHHhcCCHhHHHHHHHHHHHc
Q 048749 300 NALTKKGKLGTALRLFQAMWEK 321 (536)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~~ 321 (536)
..+...|++++|...|+.....
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh
Confidence 3344444444444444444443
No 146
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.90 E-value=0.00025 Score=53.33 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHHHHH
Q 048749 296 ATFVNALTKKGKLGTALRLFQAMWEKGR-KPDVVTCNCIIDALCFKK--------RIPEALEVLREMKNRGCLPNVTTYN 366 (536)
Q Consensus 296 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~ 366 (536)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666777777777777777777 777777777777766543 2345667777777777778888888
Q ss_pred HHHHHHHh
Q 048749 367 SLIKHLCK 374 (536)
Q Consensus 367 ~li~~~~~ 374 (536)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77776654
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.86 E-value=0.0013 Score=54.41 Aligned_cols=128 Identities=14% Similarity=0.125 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHH
Q 048749 223 LSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYD---IKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDS--VTYAT 297 (536)
Q Consensus 223 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ 297 (536)
...|..++..+ ..++...+...++.+....+.+ ....-.+...+...|++++|...|+........++. .....
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 34566677766 4888999988888876655555 334455667888999999999999999987633322 34455
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 298 FVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 298 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
+...+...|++++|+..++...... .....+....+.|.+.|+.++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6788889999999999997744332 34456677888899999999999998764
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.86 E-value=0.00022 Score=68.57 Aligned_cols=125 Identities=18% Similarity=0.097 Sum_probs=90.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHh
Q 048749 251 NEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS--KCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVV 328 (536)
Q Consensus 251 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 328 (536)
.+.+.+......+++.+....+++.+..++-..... ....-..|..++|+.|.+.|..+.++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344556666777777777777777788877777654 222223455678888888888888888888777778888888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048749 329 TCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKI 375 (536)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 375 (536)
+++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888877666666666666666666554
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.86 E-value=0.00031 Score=67.57 Aligned_cols=124 Identities=11% Similarity=0.028 Sum_probs=104.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048749 217 FGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKN---EFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSV 293 (536)
Q Consensus 217 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 293 (536)
.+.+.+......+++.+....+++.++.++.+.+. ....-..+..++|+.|.+.|..+.++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 34567788888899999888899999998887533 222233455699999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 048749 294 TYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFK 340 (536)
Q Consensus 294 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 340 (536)
+++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998887777888888778777776
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.80 E-value=0.0004 Score=52.26 Aligned_cols=81 Identities=11% Similarity=0.202 Sum_probs=68.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCcHHHH
Q 048749 434 YNVILKLYVNWDCEDKVRHTWEEMEKKGM-GPDQRSYTVMIHGLYDKG--------RLEDALSYFHEMRLKGMVPEPRTG 504 (536)
Q Consensus 434 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~t~ 504 (536)
-...|.-+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. +.-+.+.+++.|+..+++|+..||
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666677999999999999999999 899999999999877542 344578899999999999999999
Q ss_pred HHHHHHHHhh
Q 048749 505 ILVNDMNIKL 514 (536)
Q Consensus 505 ~~l~~~~~~~ 514 (536)
.+++..+.+.
T Consensus 108 nivl~~Llkg 117 (120)
T PF08579_consen 108 NIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHh
Confidence 9999887764
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.77 E-value=3.6e-05 Score=44.22 Aligned_cols=30 Identities=40% Similarity=0.588 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGE 219 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 219 (536)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 788888888888888888888888888774
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.70 E-value=0.00082 Score=50.35 Aligned_cols=92 Identities=20% Similarity=0.134 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 048749 192 GILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLG 271 (536)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 271 (536)
..+...+...|++++|++.+++..+.. +.+...+..+...+...++++.|...++......+.+..++..+...+...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 334444444555555555555544432 2222334444444444444444444444432222233334444444444444
Q ss_pred CHHHHHHHHHHHH
Q 048749 272 NVYEAKRFWKDII 284 (536)
Q Consensus 272 ~~~~A~~~~~~m~ 284 (536)
+++.|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 4444444444443
No 153
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.67 E-value=0.00061 Score=58.10 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=38.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 048749 341 KRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKI----------------KRMETVYEYLDEMEQKNGSCLPNEITFNY 404 (536)
Q Consensus 341 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 404 (536)
|..+=....+..|.+.|+.-|..+|+.|++.+=+. .+.+-|++++++|...| +.||..|+..
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~g--V~Pd~Et~~~ 143 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNG--VMPDKETEQM 143 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcC--CCCcHHHHHH
Confidence 34444444444444555555555555544443221 13344556666666665 5666666666
Q ss_pred HHHhcCCCChHHH
Q 048749 405 LLKSLKKPEEVPW 417 (536)
Q Consensus 405 ll~~~~~~~~a~~ 417 (536)
++..+|+...+.+
T Consensus 144 ll~iFG~~s~p~~ 156 (228)
T PF06239_consen 144 LLNIFGRKSHPMK 156 (228)
T ss_pred HHHHhccccHHHH
Confidence 6666665554443
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.64 E-value=0.00086 Score=62.13 Aligned_cols=129 Identities=17% Similarity=0.163 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW-LCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
+|..+++..-+.+..+.|.++|.+.++.+ ..+...|...... +...++.+.|..+|+...+.++.+...|...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45555565555555666666666665432 2222333333333 222344455666666644445555566666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 269 VLGNVYEAKRFWKDIIKSKCEPD---SVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
+.|+.+.|..+|+..... +.++ ...|...+..=.+.|+++.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666665543 1111 13556666555566666666666665555
No 155
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.63 E-value=0.0016 Score=55.54 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHH
Q 048749 185 LVNEKTYGILLNRYAA-----AHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKT 259 (536)
Q Consensus 185 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 259 (536)
..+..+|..++..|.+ .|.++=....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+=..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h------- 114 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH------- 114 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc-------
Confidence 3455555555555553 36677777888999999999999999999988754 2221 11122221101
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGK 307 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 307 (536)
.-.+-+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 115 ---------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 ---------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 123456788899999999999999999999998877665
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.62 E-value=0.0018 Score=59.95 Aligned_cols=145 Identities=13% Similarity=0.075 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048749 258 KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNA-LTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDA 336 (536)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 336 (536)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 457777777777777888888888777543 2233334333333 23356666688888887776 55566777777788
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc
Q 048749 337 LCFKKRIPEALEVLREMKNRGCLP---NVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL 409 (536)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~ 409 (536)
+.+.++.+.|..+|++.... +.+ ....|...+.-=.+.|+++.+.++.+.+.+.- |+...+..+++.|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~----~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF----PEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT----TTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh----hhhhHHHHHHHHh
Confidence 88888888888888877654 222 22478888877777888888888888887743 4444444455443
No 157
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.62 E-value=0.11 Score=53.59 Aligned_cols=218 Identities=15% Similarity=0.153 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDV--LGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIG 209 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (536)
+++..|++-...+.++. +.. .|..++.+ +.|.|+.++|..+++... ...|..|...+-.+|...|+.++|..
T Consensus 23 ~qfkkal~~~~kllkk~--Pn~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH--PNA--LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHHHC--CCc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 35666666666666553 111 12222222 345666666666666655 33466666666666667777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-C---------CHHHHHHH
Q 048749 210 VFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVL-G---------NVYEAKRF 279 (536)
Q Consensus 210 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g---------~~~~A~~~ 279 (536)
+|++.... -|+..-...+..+|.+.+.+..-.+.=-++-+.++-+...+=++++.+... . -..-|.+.
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 77666643 355555556666666666554422222222122222333322233322211 0 01234445
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHH-HHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 280 WKDIIKSK-CEPDSVTYATFVNALTKKGKLGTALRLFQ-AMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 280 ~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
++.+.+.+ ..-+..-...-...+...|++++|++++. ..-+.-..-+...-+.-++.+...+++++..++-.++...|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 55555443 11111112222233445566777776663 22222222233334455566666666666666666666554
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.62 E-value=0.0011 Score=49.72 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCF 339 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 339 (536)
+..+...+...|++++|..++++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3344455555666666666666655443 2233455555556666666666666666655542 2233455555566666
Q ss_pred cCChHHHHHHHHHHHH
Q 048749 340 KKRIPEALEVLREMKN 355 (536)
Q Consensus 340 ~g~~~~A~~~~~~m~~ 355 (536)
.|++++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666665543
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.56 E-value=0.029 Score=52.18 Aligned_cols=92 Identities=14% Similarity=0.108 Sum_probs=46.2
Q ss_pred HHHhc-CCHhHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHH
Q 048749 301 ALTKK-GKLGTALRLFQAMWEK----GRKP-DVVTCNCIIDALCFKKRIPEALEVLREMKNRGCL-----PNVT-TYNSL 368 (536)
Q Consensus 301 ~~~~~-g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-~~~~l 368 (536)
.|... |++++|++.|++..+. |..- -..++..+...+.+.|++++|.++|++....-.. .++. .|-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 44444 6666666666665543 1000 0223455666677777777777777776543221 1121 22223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 369 IKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 369 i~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
+-++...|+...|.+.|++.....
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC
Confidence 334555677777777777766543
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.55 E-value=0.011 Score=54.90 Aligned_cols=145 Identities=8% Similarity=0.061 Sum_probs=86.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHH
Q 048749 229 LLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVL-GNVYEAKRFWKDIIK----SKCEPD--SVTYATFVNA 301 (536)
Q Consensus 229 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~g~~~~--~~~~~~li~~ 301 (536)
.+..|...|++..|-.++.. +...|-.. |++++|.+.|++..+ .| .+. ...+..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~--------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE--------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH--------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 34456777777776665544 34455565 788888888887654 23 111 2455677788
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCC-----CHh-hHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC--HHHHHHHHHH
Q 048749 302 LTKKGKLGTALRLFQAMWEKGRKP-----DVV-TCNCIIDALCFKKRIPEALEVLREMKNRG--CLPN--VTTYNSLIKH 371 (536)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g~~p-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~~~~~li~~ 371 (536)
+.+.|++++|.++|+++...-... +.. .|...+-++...|++..|.+.|++..... ...+ ......||.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 899999999999999987753321 121 22333446667899999999999887542 2222 3455666766
Q ss_pred HHhc--CCHHHHHHHHHHH
Q 048749 372 LCKI--KRMETVYEYLDEM 388 (536)
Q Consensus 372 ~~~~--~~~~~A~~~~~~m 388 (536)
|-.. ..++.++.-|+.+
T Consensus 245 ~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTS
T ss_pred HHhCCHHHHHHHHHHHccc
Confidence 6542 2455565555554
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.54 E-value=0.0035 Score=49.58 Aligned_cols=96 Identities=16% Similarity=-0.052 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCC---CCHHHHHHHHH
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKEFGE--LDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFG---YDIKTMNIILN 265 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~ 265 (536)
+-.+...+.+.|++++|.+.|..+.+..- ......+..+..++.+.|+++.|...|+.+....+ ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444445555555555555555544320 00122333344444444555555544444321111 11233444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 048749 266 GWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~~~ 286 (536)
++.+.|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 444445555555554444443
No 162
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.49 E-value=0.0039 Score=49.31 Aligned_cols=97 Identities=15% Similarity=-0.021 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC--CCHhhHHHHHH
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKC--EPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRK--PDVVTCNCIID 335 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~ 335 (536)
+..+...+.+.|++++|...|+.+..... ......+..+..++.+.|++++|.+.|+.+....-. .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 44455555566666666666666654321 111234445566666666666666666666553211 11334555555
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 048749 336 ALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~ 356 (536)
++.+.|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666554
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.46 E-value=0.0067 Score=51.75 Aligned_cols=82 Identities=12% Similarity=0.008 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKEFGELDD--LSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
+..+...+...|++++|+..|++..+....+. ...+..+...+.+.|+++.|...+++.....+.+...+..+...|.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34444444444444444444444443221111 2334444444444444444444444432222223333444444444
Q ss_pred hcCC
Q 048749 269 VLGN 272 (536)
Q Consensus 269 ~~g~ 272 (536)
..|+
T Consensus 118 ~~g~ 121 (172)
T PRK02603 118 KRGE 121 (172)
T ss_pred HcCC
Confidence 4444
No 164
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.40 E-value=0.04 Score=49.76 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=39.2
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 436 VILKLYVNWDCEDKVRHTWEEMEKK--GMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 436 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
.+.+.|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4566677778887888877777764 222334556667777777888877777665543
No 165
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.18 Score=50.61 Aligned_cols=306 Identities=14% Similarity=0.119 Sum_probs=170.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP----DLVNEKTYGILLNRYAAAHMVEEAIG 209 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (536)
|++++|.+++-.+.+++ .-|..+.+.|+|-...+++..-. +..-...|+.+...++....|++|.+
T Consensus 748 g~feeaek~yld~drrD----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred cchhHhhhhhhccchhh----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777776665543 35677778888888888887654 22334678888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048749 210 VFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCE 289 (536)
Q Consensus 210 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 289 (536)
.|..-... ...+.++.+..++++-+.+-..+ +.+....-.+.+++.+.|.-++|.+.|-... .
T Consensus 818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~~L----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~ 880 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRLELFGELEVLARTL----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----L 880 (1189)
T ss_pred HHHhccch---------HhHHHHHHHHHhhhhHHHHHHhc----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----C
Confidence 88653321 14566666666666655554443 4466667778888888888888887764332 2
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhH--------------HHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 290 PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTC--------------NCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 290 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
|. ..+..|...+++.+|.++-+...- |.+.+. .--|..+.+.|..-.|-+++.+|.+
T Consensus 881 pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 881 PK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred cH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 22 235667777788877776654322 122111 1124455666666666666666643
Q ss_pred C----CCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHH--------HH
Q 048749 356 R----GCLPNVTTYNS-LIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLE--------RM 422 (536)
Q Consensus 356 ~----g~~p~~~~~~~-li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~--------~~ 422 (536)
+ +.++ ...-.. ++.++ -..+..++.+-.+.....| +.++|..+++ .+
T Consensus 952 ~e~~K~~p~-lr~KklYVL~Al-LvE~h~~~ik~~~~~~~~g------------------~~~dat~lles~~l~~~~ri 1011 (1189)
T KOG2041|consen 952 REQEKYVPY-LRLKKLYVLGAL-LVENHRQTIKELRKIDKHG------------------FLEDATDLLESGLLAEQSRI 1011 (1189)
T ss_pred HHhhccCCH-HHHHHHHHHHHH-HHHHHHHHHHHhhhhhhcC------------------cchhhhhhhhhhhhhhHHHH
Confidence 2 2221 111111 11111 1122333333333333333 2222222111 11
Q ss_pred HHCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 423 ERNGC-KMSTDTYNVILKLYVNWDCEDKVRHTWEEMEK-KGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 423 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
.+.-. -....+|-.|..-....|.++.|.+.--.+.+ ..+-|....|..|.-+-+....+...-+.|-++...
T Consensus 1012 ~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1012 LENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 11000 11244555566666778888888776544443 245677778887766666555555555555555443
No 166
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.40 E-value=0.0083 Score=47.08 Aligned_cols=91 Identities=20% Similarity=0.121 Sum_probs=57.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHH
Q 048749 194 LLNRYAAAHMVEEAIGVFDRRKEFGELDD--LSAFQNLLLWLCRYKHVEVAETFFESEKNEFGY---DIKTMNIILNGWC 268 (536)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~ 268 (536)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++.....++. +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34566677888888888888888775544 335556667777778888888877775433332 2233333334555
Q ss_pred hcCCHHHHHHHHHHHH
Q 048749 269 VLGNVYEAKRFWKDII 284 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~ 284 (536)
..|+.++|+..+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6777777777665544
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.38 E-value=0.00038 Score=51.27 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHMVEEAIGVFD 212 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 212 (536)
++++.|+.+|+.+.......++...+..+..+|.+.|++++|..+++... .+.+....-.+..++.+.|++++|+++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 56777777777777654111134445556777777777777777777633 22333444455667777777777777765
Q ss_pred H
Q 048749 213 R 213 (536)
Q Consensus 213 ~ 213 (536)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
No 168
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.37 E-value=0.24 Score=51.37 Aligned_cols=213 Identities=10% Similarity=0.050 Sum_probs=115.5
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CC
Q 048749 107 GEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DL 185 (536)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~ 185 (536)
.+..+.|++.|..+..-.+.++.....|..++|..+.+.....+ ..|..+...+-..|.+.++.++|..++++.. .-
T Consensus 30 ~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~ 107 (932)
T KOG2053|consen 30 AKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY 107 (932)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 34455555556555555554444444467888887777766544 3478888888888888888888888888877 44
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHh-cCC-C
Q 048749 186 VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKH----------VEVAETFFESE-KNE-F 253 (536)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~-~~~-~ 253 (536)
|+..-...+..+|++.+.+.+-.++=-+|-+ .++-++..|=++++.....-. ...|...++.+ ..+ -
T Consensus 108 P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk 186 (932)
T KOG2053|consen 108 PSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGK 186 (932)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCc
Confidence 6677777777778877776543333222222 223344444444444432210 12244444443 111 0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 048749 254 GYDIKTMNIILNGWCVLGNVYEAKRFWK-DIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKG 322 (536)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 322 (536)
-.+..-...-....-..|.+++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.++...|
T Consensus 187 ~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 187 IESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 0111111112223335666777777763 33332223333333445555666666666666666666654
No 169
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.35 E-value=0.085 Score=49.58 Aligned_cols=110 Identities=12% Similarity=0.095 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALC 338 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 338 (536)
+.+..|.-+...|+...|.++-.+.. -||..-|-..+.+++..++|++-.++-.. .-.+.-|-.++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 45555667778899999988877765 68889999999999999999987765432 224578999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 339 FKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEM 388 (536)
Q Consensus 339 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 388 (536)
+.|+..+|..+...+. +..-+..|.++|++.+|.+.-.+.
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999998887721 245677889999999988765443
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.34 E-value=0.006 Score=58.71 Aligned_cols=90 Identities=7% Similarity=-0.117 Sum_probs=54.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048749 196 NRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYE 275 (536)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 275 (536)
..+...|++++|++.|++.++.. +.+...|..+..++.+.|++++|...++......+.+...|..+..+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 34445566666666666666544 34455555666666666666666666666433334455566666666666666666
Q ss_pred HHHHHHHHHHC
Q 048749 276 AKRFWKDIIKS 286 (536)
Q Consensus 276 A~~~~~~m~~~ 286 (536)
|...|+...+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666666654
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.32 E-value=0.014 Score=49.82 Aligned_cols=83 Identities=14% Similarity=0.053 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPD--SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDA 336 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 336 (536)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344455555555555555555555554321111 2345555555555666666666555555531 1123334444444
Q ss_pred HHhcCC
Q 048749 337 LCFKKR 342 (536)
Q Consensus 337 ~~~~g~ 342 (536)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 444444
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.32 E-value=0.00072 Score=49.75 Aligned_cols=79 Identities=15% Similarity=0.071 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 202 HMVEEAIGVFDRRKEFGEL-DDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFW 280 (536)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 280 (536)
|+++.|+.+|+++.+.... ++...+..+..++.+.|+++.|..+++.. ..-+.+......+..++.+.|++++|+++|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-KLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-THHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555555543311 12223333444555555555555555441 110112222233344444555555555444
Q ss_pred H
Q 048749 281 K 281 (536)
Q Consensus 281 ~ 281 (536)
+
T Consensus 82 ~ 82 (84)
T PF12895_consen 82 E 82 (84)
T ss_dssp H
T ss_pred h
Confidence 3
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.31 E-value=0.0075 Score=51.25 Aligned_cols=58 Identities=10% Similarity=-0.098 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKEFGELD--DLSAFQNLLLWLCRYKHVEVAETFFES 248 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~ 248 (536)
|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|...++.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3334444444444444444444443321111 112344444444444444444444444
No 174
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.30 E-value=0.0072 Score=49.26 Aligned_cols=94 Identities=6% Similarity=-0.046 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCF 339 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 339 (536)
...+..-+...|++++|..+|+.+.... +-+..-|..|.-++-..|++++|+..|........ -|+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3344444556666666666666665544 33444555566666666666666666666666543 355556666666666
Q ss_pred cCChHHHHHHHHHHHH
Q 048749 340 KKRIPEALEVLREMKN 355 (536)
Q Consensus 340 ~g~~~~A~~~~~~m~~ 355 (536)
.|+.+.|.+-|+....
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666665543
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.29 E-value=0.066 Score=48.36 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=27.4
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYDIKTM---NIILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
+.+.|+++.|.+.|+.+....+-+...- -.++.+|.+.+++++|...+++.++.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3445555555555555433333232222 23444555666666666666666554
No 176
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.28 E-value=0.0078 Score=57.93 Aligned_cols=90 Identities=13% Similarity=-0.072 Sum_probs=67.1
Q ss_pred HHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 048749 231 LWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGT 310 (536)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 310 (536)
..+...|+++.|...|++.....+.+...|..+..+|.+.|++++|+..++..++.. +.+...|..+..+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 445567788888888887654446677777777888888888888888888877764 3456677777778888888888
Q ss_pred HHHHHHHHHHc
Q 048749 311 ALRLFQAMWEK 321 (536)
Q Consensus 311 a~~~~~~m~~~ 321 (536)
|+..|++..+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 88888887774
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.26 E-value=0.0054 Score=49.99 Aligned_cols=92 Identities=16% Similarity=0.057 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
......+...+...|++++|..+|+... ++-+..-|-.|..++-..|++++|++.|....... +.|+..+-.+..++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 3344455555666777777777777665 55666667777777777777777777777776665 45666666666777
Q ss_pred HhcCCHHHHHHHHHH
Q 048749 234 CRYKHVEVAETFFES 248 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~ 248 (536)
...|+.+.|++.|+.
T Consensus 114 L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 114 LACDNVCYAIKALKA 128 (157)
T ss_pred HHcCCHHHHHHHHHH
Confidence 777777777777665
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.23 E-value=0.034 Score=56.08 Aligned_cols=139 Identities=9% Similarity=-0.037 Sum_probs=95.5
Q ss_pred CCCCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------CHhHHHHHHHH
Q 048749 251 NEFGYDIKTMNIILNGWCV--L---GNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKG--------KLGTALRLFQA 317 (536)
Q Consensus 251 ~~~~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~ 317 (536)
...+.+...|...+.+... . ++.+.|..+|++.++.. +-....|..+..++.... ++..+.+..+.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3446677888888877543 2 23678888998888764 223445554444333221 12333344443
Q ss_pred HHHc-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 318 MWEK-GRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 318 m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
.... ....+...|.++.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+.+....+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3332 233455677777666777899999999999998875 688899999999999999999999999998866
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.14 E-value=0.011 Score=50.11 Aligned_cols=60 Identities=8% Similarity=-0.134 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 226 FQNLLLWLCRYKHVEVAETFFESEKNEFG--Y-DIKTMNIILNGWCVLGNVYEAKRFWKDIIK 285 (536)
Q Consensus 226 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 285 (536)
+..+...+...|++++|...|+......+ + ...++..+...|...|++++|+..++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555544311100 0 122444444445555555555555544443
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.11 E-value=0.051 Score=42.67 Aligned_cols=105 Identities=22% Similarity=0.219 Sum_probs=59.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC----HhhHHHHHHH
Q 048749 263 ILNGWCVLGNVYEAKRFWKDIIKSKCEPD--SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPD----VVTCNCIIDA 336 (536)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~ 336 (536)
+..++-..|+.++|+.+|++....|...+ ...+-.+.+.+...|++++|+.++++..... |+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 33445566777777777777777664433 2345556666777777777777777766541 22 1122223335
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 337 LCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLC 373 (536)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 373 (536)
+...|+.++|++.+-.... ++...|.--|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5666777777776655443 23334544444443
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.09 E-value=0.037 Score=55.83 Aligned_cols=63 Identities=13% Similarity=0.011 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 292 SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
...|..+.-.....|++++|...+++..+.. |+...|..+...+...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444444555666666665555532 45555555555555566666666665555443
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.03 E-value=0.0028 Score=44.31 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=31.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 339 FKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 339 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
+.|++++|+++|+.+...... +...+..+..+|.+.|++++|.+++..+....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 456666666666666554322 45555566666666666666666666666543
No 183
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.038 Score=48.57 Aligned_cols=57 Identities=9% Similarity=0.082 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 192 GILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFES 248 (536)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 248 (536)
+.+++.+.-.|.+.-.+.++.+.++...+.++.....|++.-.+.|+.+.|...|+.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 334444444455555555555555544444444444555555555555555555553
No 184
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.90 E-value=0.01 Score=48.97 Aligned_cols=77 Identities=18% Similarity=0.306 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCcHHHHHH
Q 048749 432 DTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRL-----KGMVPEPRTGIL 506 (536)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 506 (536)
.+...++..+...|++++|..+.+.+.... +-|...|..+|.+|...|+..+|.+.|+++.. .|+.|++.|..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 456678888889999999999999999863 34778999999999999999999999988864 399999998666
Q ss_pred HHH
Q 048749 507 VND 509 (536)
Q Consensus 507 l~~ 509 (536)
.-.
T Consensus 142 ~~~ 144 (146)
T PF03704_consen 142 YRE 144 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 185
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.88 E-value=0.014 Score=52.35 Aligned_cols=101 Identities=14% Similarity=0.059 Sum_probs=75.9
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 302 LTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381 (536)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A 381 (536)
+.+.+++.+|+..|.+.++. .+-|.+-|..-..+|++.|.++.|++=.+........ ...+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 45678888888888888885 3346777777888888888888888877777665211 356788888888888888888
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHh
Q 048749 382 YEYLDEMEQKNGSCLPNEITFNYLLKS 408 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~~~~~ll~~ 408 (536)
.+.|++..+ +.|+..+|-.=|..
T Consensus 169 ~~aykKaLe----ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE----LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc----cCCCcHHHHHHHHH
Confidence 888888877 44777766655544
No 186
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.45 Score=44.98 Aligned_cols=166 Identities=13% Similarity=0.114 Sum_probs=90.6
Q ss_pred CCHHHHHHHH-HHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHHHH-
Q 048749 290 PDSVTYATFV-NALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDA--LCFKKRIPEALEVLREMKNRGCLPNVTTY- 365 (536)
Q Consensus 290 ~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~- 365 (536)
|...+|..+- .++...|+.++|.++--...+.. ....+...++. +--.++.+.|..-|++....+ |+-..-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 3334444332 34455677777776666555542 11223333332 224566777777777666542 332211
Q ss_pred --HHHHHHH----------HhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHH
Q 048749 366 --NSLIKHL----------CKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDT 433 (536)
Q Consensus 366 --~~li~~~----------~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~ 433 (536)
..+...+ .+.|++.+|.+.|.+....+ |+ ++.++...
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id----P~---------------------------n~~~nakl 289 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID----PS---------------------------NKKTNAKL 289 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC----cc---------------------------ccchhHHH
Confidence 1112221 23455666666666555433 22 34667777
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHH-HHHHHH--HHHhcCCHHHHHHHHHHHHHC
Q 048749 434 YNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRS-YTVMIH--GLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 434 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~--~~~~~g~~~~A~~~~~~m~~~ 495 (536)
|........+.|+.++|+.--++..+. |... +..+.. ++...++|++|.+-+++..+.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777777777888888887777766654 4333 233333 344557788888888776654
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.77 E-value=0.0038 Score=43.60 Aligned_cols=47 Identities=19% Similarity=0.154 Sum_probs=18.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 201 AHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFES 248 (536)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 248 (536)
.|++++|+++|+.+.+.. +.+......+..+|.+.|++++|..+++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444443332 22333333344444444444444444443
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.063 Score=48.55 Aligned_cols=103 Identities=13% Similarity=0.123 Sum_probs=60.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhcCCCCCCHHHH
Q 048749 184 DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYK---HVEVAETFFESEKNEFGYDIKTM 260 (536)
Q Consensus 184 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~ 260 (536)
++.|...|-.|..+|...|+++.|..-|....+.. .+++..+..+..++.... ...++..+|++....-+.|+.+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 45666677777777777777777777776666543 344555555544443322 23455666666544445555566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 261 NIILNGWCVLGNVYEAKRFWKDIIKSK 287 (536)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~m~~~g 287 (536)
..|...+...|++.+|...|+.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 666666666666666666666666553
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.72 E-value=0.0093 Score=41.17 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=22.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 267 WCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
+.+.|++++|...|+++++.. +-+...+..+..++...|++++|...|+++.+
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444433 22333444444444444444444444444433
No 190
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.72 E-value=0.53 Score=44.16 Aligned_cols=314 Identities=14% Similarity=0.094 Sum_probs=183.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--ccCCHHHHHHHHHhCC--CCCCHHHHHHHHHH--HHhcCCHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLG--RARRFVELIQVFDEMP--DLVNEKTYGILLNR--YAAAHMVEEAI 208 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~--~~~~g~~~~A~ 208 (536)
.+..+.+.|..-.+..| |.+|-..+. -.|+-..|.++-.+.. ...|....-.++.+ -.-.|+++.|.
T Consensus 68 sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHH
Confidence 56667777777666543 444444443 4677777777766654 22344444444443 33568999999
Q ss_pred HHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 209 GVFDRRKEFGELDDLS--AFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 209 ~~~~~m~~~g~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
+-|+.|.. .|... -...|.-..-+.|..+.|..+-+.....-+.-...+.+.+...|..|+++.|+++.+.-...
T Consensus 141 ~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 141 KKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 99998885 23222 22333334457788888888877765544556778889999999999999999999877654
Q ss_pred C-CCCCHHH--HHHHHHHHH---hcCCHhHHHHHHHHHHHcCCCCCHhhH-HHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 048749 287 K-CEPDSVT--YATFVNALT---KKGKLGTALRLFQAMWEKGRKPDVVTC-NCIIDALCFKKRIPEALEVLREMKNRGCL 359 (536)
Q Consensus 287 g-~~~~~~~--~~~li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 359 (536)
. +.+++.- -..|+.+-. -..+...|...-.+..+ +.||..-- ..-..++.+.|+..++-.+++.+-+....
T Consensus 218 ~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 218 KVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 3 4455422 222332221 12344555554444443 44553322 22345678888888888888888877544
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048749 360 PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILK 439 (536)
Q Consensus 360 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 439 (536)
|+. + ..|....--|.+.+-++...+... .+|| +......+..
T Consensus 296 P~i--a----~lY~~ar~gdta~dRlkRa~~L~s-lk~n-------------------------------naes~~~va~ 337 (531)
T COG3898 296 PDI--A----LLYVRARSGDTALDRLKRAKKLES-LKPN-------------------------------NAESSLAVAE 337 (531)
T ss_pred hHH--H----HHHHHhcCCCcHHHHHHHHHHHHh-cCcc-------------------------------chHHHHHHHH
Confidence 443 2 234444444444444444433211 2222 3445555566
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCc
Q 048749 440 LYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLY-DKGRLEDALSYFHEMRLKGMVPE 500 (536)
Q Consensus 440 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~ 500 (536)
+-...|++..|..--+..... .|....|-.|.+.-. ..||-.++...+-+.++.--.|+
T Consensus 338 aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 338 AALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 666667776666655555443 566666666665443 34777777777776665433333
No 191
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.71 E-value=0.24 Score=43.47 Aligned_cols=82 Identities=12% Similarity=0.193 Sum_probs=38.1
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCcHHHHHHHHHH
Q 048749 433 TYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK--GMVPEPRTGILVNDM 510 (536)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~l~~~ 510 (536)
.+..++.-|=...-..+|...+..+.+. =...--.+..-|.+.|.+..|..-++.++++ +..-.......+...
T Consensus 112 ~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 112 EFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 3444444444444455555444444321 0001112344566667777777777776665 111112235666666
Q ss_pred HHhhhhhh
Q 048749 511 NIKLKERG 518 (536)
Q Consensus 511 ~~~~~~~~ 518 (536)
+.+.|..+
T Consensus 188 y~~l~~~~ 195 (203)
T PF13525_consen 188 YYKLGLKQ 195 (203)
T ss_dssp HHHTT-HH
T ss_pred HHHhCChH
Confidence 66666665
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.68 E-value=0.0098 Score=41.05 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=36.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 334 IDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
...+.+.|++++|.+.|+.+.+.... +...+..+..++...|++++|...|+++.+..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34566667777777777777665422 45566666666677777777777777666543
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.67 E-value=0.049 Score=47.81 Aligned_cols=54 Identities=19% Similarity=0.181 Sum_probs=24.3
Q ss_pred HHHHHccCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 163 LDVLGRARRFVELIQVFDEMP-----DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKE 216 (536)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (536)
...+.+.|++.+|...|+.+. .+.-..+.-.++.++-+.|+++.|...+++.++
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555544 112223333444455555555555555555444
No 194
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.66 E-value=0.05 Score=43.19 Aligned_cols=88 Identities=11% Similarity=0.046 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 430 STDTYNVILKLYVNWDCEDKVRHTWEEME---------------KKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 430 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------------~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
|..++..+|.++++.|+++....+++..- ...+.|+..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34566777777777777777777766442 123568899999999999999999999999999887
Q ss_pred C-CCCCcHHHHHHHHHHHHhhhhh
Q 048749 495 K-GMVPEPRTGILVNDMNIKLKER 517 (536)
Q Consensus 495 ~-g~~p~~~t~~~l~~~~~~~~~~ 517 (536)
. ++..+..++..|...+...-..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~~ 104 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSSK 104 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcCC
Confidence 7 7777777888887777766553
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.64 E-value=0.0066 Score=42.53 Aligned_cols=59 Identities=27% Similarity=0.238 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYK-HVEVAETFFES 248 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~ 248 (536)
.+|..+...+...|++++|+..|.+.++.. +.+...|..+..++.+.| ++++|.+.++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 344444444444555555555554444433 223334444444444444 34444444443
No 196
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.61 E-value=0.027 Score=50.62 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=50.8
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 313 (536)
.+.+++++|+..|.+...-.+.|.+-|..-..+|++.|.++.|++-.+..+..+ +--..+|..|-.+|...|++++|++
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHH
Confidence 344555555555555333334455555555555666666666655555544432 2223456666666666666666666
Q ss_pred HHHHHHHcCCCCCHhhHHH
Q 048749 314 LFQAMWEKGRKPDVVTCNC 332 (536)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~ 332 (536)
.|+..++ +.|+..+|-.
T Consensus 171 aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 171 AYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHhhhc--cCCCcHHHHH
Confidence 6665555 4555544433
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.61 E-value=0.012 Score=41.09 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHH
Q 048749 258 KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKG-KLGTALRLFQAMWE 320 (536)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 320 (536)
.+|..+...+...|++++|+..|++.++.. +-+...|..+..++...| ++++|++.++...+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344444555555555555555555554443 223444444445555555 35555555544433
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.60 E-value=0.77 Score=45.96 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=37.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048749 436 VILKLYVNWDCEDKVRHTWEEMEKKGMGPDQR-----------SYTVMIHGLYDKGRLEDALSYFHEMRLKGM 497 (536)
Q Consensus 436 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 497 (536)
.+++.+...|++++|..+-+...+. .||+. -+..--.+|.+.|+-+||..+++++....+
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 3455566666666666665554432 23321 123334578889999999999998876533
No 199
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.099 Score=47.32 Aligned_cols=119 Identities=9% Similarity=-0.019 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC---CHHHHHHH
Q 048749 136 WEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAH---MVEEAIGV 210 (536)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g---~~~~A~~~ 210 (536)
++....-.+.-.+++ +.|..-|-.|..+|.+.|++..|...|.+.. .+.+...+..+..++.... .-.++.++
T Consensus 138 ~~~l~a~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 333333344444443 6789999999999999999999999999887 6788888888887766543 36789999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCH
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDI 257 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 257 (536)
|+++.... +.|..+..-|...+...|++.+|...|+.|.+..+++.
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999866 56677777778889999999999999999876655554
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.094 Score=46.20 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHH---
Q 048749 258 KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCII--- 334 (536)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li--- 334 (536)
.+.+.++....-.|.+.-....+.+.++...+.++.....|.+.-.+.|+.+.|...|++..+..-..|..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566667676778888888888888887666777888888888888899988888888776643333444444333
Q ss_pred --HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 335 --DALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 335 --~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
..|.-.+++..|...++++...... |....|.=.-+..-.|+...|++.+..|.+..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3455567777888888777665322 34444433333334578888888888888755
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.53 E-value=0.019 Score=47.40 Aligned_cols=69 Identities=22% Similarity=0.355 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CCCCCHhh
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK-----GRKPDVVT 329 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~~~ 329 (536)
...++..+...|++++|..+.+.+.... +-|...|..+|.+|...|+..+|.+.|+.+.+. |+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444445555566666666666555544 345555666666666666666666665554332 55555443
No 202
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.49 E-value=0.29 Score=38.32 Aligned_cols=141 Identities=13% Similarity=0.120 Sum_probs=81.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 198 YAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAK 277 (536)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 277 (536)
..-.|.+++..++..+.... .+..-+|-++--....-+-+-..+.++.+.+-+..+ .+|++....
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis------------~C~NlKrVi 76 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS------------KCGNLKRVI 76 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG------------G-S-THHHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch------------hhcchHHHH
Confidence 34567788888888777763 345556666655555556666666666665433221 344444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 278 RFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 278 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
..+-.+ ..+..-....+..+...|+-|.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 77 ~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 444322 123334555667777888888888888887653 45677777788888888888888888888887777
Q ss_pred CC
Q 048749 358 CL 359 (536)
Q Consensus 358 ~~ 359 (536)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 54
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.34 E-value=0.51 Score=39.51 Aligned_cols=123 Identities=16% Similarity=0.162 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 048749 220 LDDLSAFQNLLLWLCRYKHVEVAETFFESEKNE-FGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK---CEPDSVTY 295 (536)
Q Consensus 220 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~ 295 (536)
.|+..--..|..++.+.|+..+|...|++...| +..|....-.+..+....+++..|...++.+.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 344444445555555666666666666554333 33455555555555555666666666666555432 1222 23
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHH
Q 048749 296 ATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEA 346 (536)
Q Consensus 296 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 346 (536)
-.+.+.+...|++.+|..-|+..... -|+...-......+.+.|+.+++
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHH
Confidence 33445556666666666666665553 33333222223334455544443
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.30 E-value=0.029 Score=39.73 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=53.9
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHH
Q 048749 438 LKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILV 507 (536)
Q Consensus 438 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 507 (536)
-..|.+.+++++|.++++.+...+ +.+...|......+.+.|++++|.+.|+...+. .|+..+...+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHHHHH
Confidence 356889999999999999999874 335677788888999999999999999999974 5666654433
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.26 E-value=0.089 Score=47.97 Aligned_cols=86 Identities=14% Similarity=0.014 Sum_probs=36.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcC
Q 048749 268 CVLGNVYEAKRFWKDIIKSKCEPD----SVTYATFVNALTKKGKLGTALRLFQAMWEKGR--KPDVVTCNCIIDALCFKK 341 (536)
Q Consensus 268 ~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g 341 (536)
.+.|++++|...|+.+++.- |+ ..++..+...|...|++++|...|+.+.+.-. ......+-.+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 34455555555555554432 21 12344444455555555555555555544210 001122222333344445
Q ss_pred ChHHHHHHHHHHHH
Q 048749 342 RIPEALEVLREMKN 355 (536)
Q Consensus 342 ~~~~A~~~~~~m~~ 355 (536)
+.++|..+|+.+.+
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554443
No 206
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=1.2 Score=42.28 Aligned_cols=248 Identities=12% Similarity=-0.016 Sum_probs=144.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFD 212 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 212 (536)
++..|+..+..+++.. +-+..-|.--+..+...|++++|.--...-. .+.......-.-+++...++..+|.+.++
T Consensus 64 ~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred hHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh
Confidence 6777777777777653 3344455555556666666666654443322 11111122222333333333333333322
Q ss_pred ---------------HHHHcCC-CCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH--HHhcCCH
Q 048749 213 ---------------RRKEFGE-LDDLSAFQNLL-LWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG--WCVLGNV 273 (536)
Q Consensus 213 ---------------~m~~~g~-~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~ 273 (536)
....... +|...++..+- .++.-.|+.+.|..+--.+.+.-. ...+..++++ +--.++.
T Consensus 142 ~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~--~n~~al~vrg~~~yy~~~~ 219 (486)
T KOG0550|consen 142 SKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA--TNAEALYVRGLCLYYNDNA 219 (486)
T ss_pred hhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc--chhHHHHhcccccccccch
Confidence 2222111 23334443332 345567888888776655433222 2233444444 3357888
Q ss_pred HHHHHHHHHHHHCCCCCCHHH-------------HHHHHHHHHhcCCHhHHHHHHHHHHHc---CCCCCHhhHHHHHHHH
Q 048749 274 YEAKRFWKDIIKSKCEPDSVT-------------YATFVNALTKKGKLGTALRLFQAMWEK---GRKPDVVTCNCIIDAL 337 (536)
Q Consensus 274 ~~A~~~~~~m~~~g~~~~~~~-------------~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~ 337 (536)
+.|...|++.+..+ |+... |..=.+-..+.|.+..|.+.|.+.+.. ...|+...|-......
T Consensus 220 ~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~ 297 (486)
T KOG0550|consen 220 DKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVN 297 (486)
T ss_pred HHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhh
Confidence 99999998887654 44322 222233456789999999999998874 3556667777777788
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHH--HHHHhcCCHHHHHHHHHHHHhcC
Q 048749 338 CFKKRIPEALEVLREMKNRGCLPNVTT-YNSLI--KHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 338 ~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li--~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
.+.|+..+|+.--+...+. |..- ...+. .++...++|++|.+-|++..+..
T Consensus 298 ~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 298 IRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred cccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999988888764 4332 22222 34556788999999999887765
No 207
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.19 E-value=0.091 Score=41.70 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=26.1
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHH
Q 048749 323 RKPDVVTCNCIIDALCFKKRIPEALEVLREMK-NRGCLPNVTTYNSLIK 370 (536)
Q Consensus 323 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~ 370 (536)
..|+..+..+++.+|+..|++..|+++.+... ..+++.+..+|..|++
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34555555555555555555555555555543 3344445555555554
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.16 E-value=0.12 Score=47.26 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSK--CEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
++..+...|...|++++|...|+.+.+.- -+.....+..+...+...|+.++|.++|+.+.+
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444555555555555544321 011122333333444445555555555555444
No 209
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.14 E-value=1.4 Score=42.48 Aligned_cols=381 Identities=12% Similarity=0.094 Sum_probs=190.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHH--HHhcCCH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPG------SNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNR--YAAAHMV 204 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~--~~~~g~~ 204 (536)
++..+|.++|..+.... ..+ ....+.++++|... +++.....+.... ..+ ...|-.+..+ +-+.+.+
T Consensus 20 ~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred hhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhhH
Confidence 58999999999987653 223 22345666776543 3444444444443 222 3345555444 3367889
Q ss_pred HHHHHHHHHHHHc--CCCCC---H---------HHHHHHHHHHHhcCCHHHHHHHHHHhc-----CCCCCCHHHHHHHHH
Q 048749 205 EEAIGVFDRRKEF--GELDD---L---------SAFQNLLLWLCRYKHVEVAETFFESEK-----NEFGYDIKTMNIILN 265 (536)
Q Consensus 205 ~~A~~~~~~m~~~--g~~~~---~---------~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~li~ 265 (536)
.+|++.+..-.+. +..+. . ..=+..+..+...|++.+++.+++++. +....+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 9999988776654 33332 1 111345677889999999999998853 334578888988776
Q ss_pred HHHhcCC---------------HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhc--CCHhHHHHHHHHHHHcC
Q 048749 266 GWCVLGN---------------VYEAKRFWKDIIKS------KCEPDSVTYATFVNALTKK--GKLGTALRLFQAMWEKG 322 (536)
Q Consensus 266 ~~~~~g~---------------~~~A~~~~~~m~~~------g~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g 322 (536)
.+.+.-- ++.+.-+.++|... .+.|.......++....-. .+..--+++++.-...-
T Consensus 176 mlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~y 255 (549)
T PF07079_consen 176 MLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFY 255 (549)
T ss_pred HHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhc
Confidence 6654311 12222222333211 1222222222222222211 11122223333333333
Q ss_pred CCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 048749 323 RKPDVV-TCNCIIDALCFKKRIPEALEVLREMKNRGCL----PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLP 397 (536)
Q Consensus 323 ~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p 397 (536)
+.|+.. +...++..+.+ +.+++..+-+.+....+. -=..++..++....+.++..+|-+.+.-+..-. |
T Consensus 256 v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld----p 329 (549)
T PF07079_consen 256 VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD----P 329 (549)
T ss_pred cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC----C
Confidence 344422 22233333333 344444443333222111 023456666666666666666666665554422 2
Q ss_pred cHH----------HH-----------------------------------HHHHHhc------CC-CChHHHHHHHHHHC
Q 048749 398 NEI----------TF-----------------------------------NYLLKSL------KK-PEEVPWVLERMERN 425 (536)
Q Consensus 398 ~~~----------~~-----------------------------------~~ll~~~------~~-~~~a~~~~~~~~~~ 425 (536)
+.. +. ..++.+. +. .+.+.++++.+.+.
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 111 00 0111110 11 22334444444432
Q ss_pred CCCCCHHHHHHHH----HHHHc---cCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 048749 426 GCKMSTDTYNVIL----KLYVN---WDCEDKVRHTWEEMEKKGMGPDQ----RSYTVMIHG--LYDKGRLEDALSYFHEM 492 (536)
Q Consensus 426 ~~~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~--~~~~g~~~~A~~~~~~m 492 (536)
. +-|..+-|.+. ..|.. ...+.+...+-+-+.+.|++|-. ..-|.|-+| +..+|++.++.-+-.-+
T Consensus 410 t-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 410 T-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred c-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1 11222222221 22221 23334444444445566766533 344445443 45678888877655544
Q ss_pred HHCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 048749 493 RLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 493 ~~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~ 527 (536)
.+ +.|.+.++.++.-.....+...||-..+.++
T Consensus 489 ~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 489 TK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 43 7888888888888888888888888877765
No 210
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.12 E-value=0.24 Score=48.87 Aligned_cols=153 Identities=12% Similarity=0.113 Sum_probs=82.9
Q ss_pred ccCCHHHHHHHHH--hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 168 RARRFVELIQVFD--EMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETF 245 (536)
Q Consensus 168 ~~g~~~~A~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 245 (536)
-.|+++++.++.. ++....+..-.+.+++.+-+.|..+.|+++-.+-. .-.....+.|+++.|.++
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHH
Confidence 3555666544443 22211224456777777777777777776643321 233445677777777766
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 048749 246 FESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP 325 (536)
Q Consensus 246 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 325 (536)
-+.. .+...|..|.+...+.|+++-|.+.|.+.. -|..|+-.|.-.|+.+.-.++.+.....|-
T Consensus 341 a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-- 404 (443)
T PF04053_consen 341 AKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD-- 404 (443)
T ss_dssp CCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 4432 256677777777777777777777776643 245555566667777666666655555432
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHH
Q 048749 326 DVVTCNCIIDALCFKKRIPEALEVLRE 352 (536)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (536)
++....++.-.|+.++..+++.+
T Consensus 405 ----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444455556666666666544
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.09 E-value=0.14 Score=48.07 Aligned_cols=224 Identities=15% Similarity=0.118 Sum_probs=129.7
Q ss_pred HHHHccCCHHHHHHHHHhCC--CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH--HHH--cCCC-CCHHHHHHHHHH
Q 048749 164 DVLGRARRFVELIQVFDEMP--DLVNE----KTYGILLNRYAAAHMVEEAIGVFDR--RKE--FGEL-DDLSAFQNLLLW 232 (536)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~~~--~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~--m~~--~g~~-~~~~~~~~ll~~ 232 (536)
.-+++.|+....+.+|+... ...|. ..|..|..+|.-.+++++|++.... ... .|-+ -.......|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 45789999999999999877 22232 3466677778888889999887532 111 1111 112233445556
Q ss_pred HHhcCCHHHHHHHHHH-h------cCCCCCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHH-
Q 048749 233 LCRYKHVEVAETFFES-E------KNEFGYDIKTMNIILNGWCVLGN--------------------VYEAKRFWKDII- 284 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~-~------~~~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~- 284 (536)
+--.|.+++|..+-.+ + ...+ .....+..+...|...|. ++.|.++|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv-~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRV-LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHH-hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 6667788888765433 2 1111 123344455555654332 223444443221
Q ss_pred ---HCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHH-
Q 048749 285 ---KSKCE-PDSVTYATFVNALTKKGKLGTALRLFQAMWEK----GR-KPDVVTCNCIIDALCFKKRIPEALEVLREMK- 354 (536)
Q Consensus 285 ---~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 354 (536)
+.|-. .--..|..|.+.|.-.|+++.|+...+.-... |- ......+..+.+++.-.|+++.|.+.|+...
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 11100 01234666666677778888888766543321 21 1223467778888888888988888887653
Q ss_pred ---HCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 355 ---NRGC-LPNVTTYNSLIKHLCKIKRMETVYEYLDEM 388 (536)
Q Consensus 355 ---~~g~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 388 (536)
+.|- .....+..+|...|.-..++++|+.++.+-
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 2221 223455666777888778888888877653
No 212
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.05 E-value=0.12 Score=45.99 Aligned_cols=129 Identities=15% Similarity=0.105 Sum_probs=85.8
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 174 ELIQVFDEMP-DLVNEKTYGILLNRYAAA-----HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFE 247 (536)
Q Consensus 174 ~A~~~~~~~~-~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 247 (536)
..++.|+... ...|..+|-+.+..+... +.++-....++.|.+.|+..|..+|+.|++.+-+-.-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf--------- 122 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF--------- 122 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc---------
Confidence 3455566665 556777777777776644 4466666778889999999999999999987644321
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHHH
Q 048749 248 SEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL-GTALRLFQAMWE 320 (536)
Q Consensus 248 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 320 (536)
.|.... ....-.|- .+-+-+++++++|...|+.||..+-..|++++.+.+-. .+..++.--|.+
T Consensus 123 ------iP~nvf-Q~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 123 ------IPQNVF-QKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred ------ccHHHH-HHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 222111 11111121 23346889999999999999999999999999887763 334444444443
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.04 E-value=0.034 Score=39.35 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=29.8
Q ss_pred HHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048749 164 DVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEF 217 (536)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 217 (536)
.+|.+.+++++|.++++.+. .+.+...|.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555555555555555555 4445555555555555555555555555555543
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.03 E-value=1.5 Score=41.92 Aligned_cols=33 Identities=6% Similarity=-0.007 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 360 PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 360 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
.+-..+.+++.++.-.|+.++|.+..++|....
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 355566677888888888888888888887653
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.03 E-value=1.5 Score=41.91 Aligned_cols=31 Identities=13% Similarity=0.057 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 465 DQRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
|.-.+.+++.++.-.|+.++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4444566677777777777777777777765
No 216
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=2.3 Score=43.55 Aligned_cols=308 Identities=13% Similarity=0.104 Sum_probs=158.5
Q ss_pred HHHHHHHccCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048749 161 AILDVLGRARRFVELIQVFDEMPDL--VNEKTYGILLNRYAAAHM--VEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRY 236 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 236 (536)
.+|+-+...+.+..|+++-..+..+ .....|......+.+..+ -+++++.+++=..... -....|..+..-....
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhc
Confidence 4567777788888888888877621 124556666666666532 3334444433333222 3444666677777788
Q ss_pred CCHHHHHHHHHHhcCC---CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCCCHHHHHHHHH
Q 048749 237 KHVEVAETFFESEKNE---FG--YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK-----------CEPDSVTYATFVN 300 (536)
Q Consensus 237 ~~~~~a~~~~~~~~~~---~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~~~~~~~~~li~ 300 (536)
|+.+.|..+++.-... ++ .+..-+...+.-+.+.|+.+....++..+...- .+.....|.-+++
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r 600 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMR 600 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 8888888887763211 11 122234445555666777776666665554310 0111111111111
Q ss_pred --------HHHhcCCHhHHHHHH--HHHH----HcCCCCCHhhHHHHHHHHHhcCChH----------HHHHHHHHHH-H
Q 048749 301 --------ALTKKGKLGTALRLF--QAMW----EKGRKPDVVTCNCIIDALCFKKRIP----------EALEVLREMK-N 355 (536)
Q Consensus 301 --------~~~~~g~~~~a~~~~--~~m~----~~g~~p~~~~~~~li~~~~~~g~~~----------~A~~~~~~m~-~ 355 (536)
.+.+.++-.++..-| +... ..|..|+ ......+|.+..... +-+.+.+.+. +
T Consensus 601 ~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q 677 (829)
T KOG2280|consen 601 HQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQ 677 (829)
T ss_pred hhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 001111111111111 0000 0122222 222333444433311 1112222221 1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHH
Q 048749 356 RGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYN 435 (536)
Q Consensus 356 ~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 435 (536)
.|.....-+.+--+.-+...|+-.+|.++-.+. -.||...|..-+.++...++.+++.+...... .+.-|.
T Consensus 678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F------kipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~ 748 (829)
T KOG2280|consen 678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF------KIPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYL 748 (829)
T ss_pred hccccccCcHHHHHHHHHHccchHHHHHHHHhc------CCcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCch
Confidence 222223334444555566677777777776665 45777777777777777777777666655543 134566
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 436 VILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFH 490 (536)
Q Consensus 436 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 490 (536)
-.+..|.+.|+.++|.+.+.+.... .-...+|.+.|++.+|.++.-
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHH
Confidence 6777788888888887776654321 145566777777777766543
No 217
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.94 E-value=1.5 Score=41.30 Aligned_cols=81 Identities=9% Similarity=0.086 Sum_probs=39.9
Q ss_pred CcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048749 397 PNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGL 476 (536)
Q Consensus 397 p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 476 (536)
|+..-|...+.++...++..++.+-..... ++.-|...+..|.+.|+..+|..+...+. +..-+..|
T Consensus 206 ~dkrfw~lki~aLa~~~~w~eL~~fa~skK---sPIGyepFv~~~~~~~~~~eA~~yI~k~~----------~~~rv~~y 272 (319)
T PF04840_consen 206 PDKRFWWLKIKALAENKDWDELEKFAKSKK---SPIGYEPFVEACLKYGNKKEASKYIPKIP----------DEERVEMY 272 (319)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHhCCC---CCCChHHHHHHHHHCCCHHHHHHHHHhCC----------hHHHHHHH
Confidence 444444444444444444333333222111 22455666666666666666666655411 23344556
Q ss_pred HhcCCHHHHHHHHH
Q 048749 477 YDKGRLEDALSYFH 490 (536)
Q Consensus 477 ~~~g~~~~A~~~~~ 490 (536)
.+.|++.+|.+..-
T Consensus 273 ~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 273 LKCGDYKEAAQEAF 286 (319)
T ss_pred HHCCCHHHHHHHHH
Confidence 66666666665443
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.85 E-value=0.072 Score=49.94 Aligned_cols=257 Identities=15% Similarity=0.150 Sum_probs=154.4
Q ss_pred CCHHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHh-------CC-CCCCHHHHHHHHHHHHhcCC
Q 048749 134 FDWEAAYTFFKWVSREGD--YSPGSNVFNAILDVLGRARRFVELIQVFDE-------MP-DLVNEKTYGILLNRYAAAHM 203 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~-~~~~~~~~~~li~~~~~~g~ 203 (536)
++......+|+.+++-+- +..=...|..|.++|.-.+++++|++.... |. ......+-..|...+--.|.
T Consensus 31 gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~ 110 (639)
T KOG1130|consen 31 GDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGA 110 (639)
T ss_pred cchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcc
Confidence 588899999999987651 111144567777777778888888775432 11 11112233334444555566
Q ss_pred HHHHHHHHHH----HHHcCCC-CCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHH---hcCCC--
Q 048749 204 VEEAIGVFDR----RKEFGEL-DDLSAFQNLLLWLCRYKH--------------------VEVAETFFES---EKNEF-- 253 (536)
Q Consensus 204 ~~~A~~~~~~----m~~~g~~-~~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~---~~~~~-- 253 (536)
+++|+-.-.+ ..+.|-. ....++-.+...|...|+ ++.|.++|.. +....
T Consensus 111 fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgD 190 (639)
T KOG1130|consen 111 FDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGD 190 (639)
T ss_pred cchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7776654322 2222211 122344455666644432 2345555544 11111
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC
Q 048749 254 -GYDIKTMNIILNGWCVLGNVYEAKRFWKDIIK----SKC-EPDSVTYATFVNALTKKGKLGTALRLFQAMWEK----GR 323 (536)
Q Consensus 254 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~ 323 (536)
..--.+|..|...|.-.|+++.|+...+.-.+ -|- ......+..+.+++.-.|+++.|.+.|+.-... |-
T Consensus 191 r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~ 270 (639)
T KOG1130|consen 191 RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN 270 (639)
T ss_pred HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc
Confidence 11223466666777778999999877654322 221 122456788889999999999999988875433 21
Q ss_pred -CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 324 -KPDVVTCNCIIDALCFKKRIPEALEVLREMKN----RG-CLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 324 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
......+-+|.+.|.-..++++|+.++.+-.. .+ ..-....|.+|..+|...|..++|+.+...-.+
T Consensus 271 r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 271 RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22344566777888888889999998876432 11 112456788899999999999999888766544
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.84 E-value=0.024 Score=40.83 Aligned_cols=64 Identities=22% Similarity=0.400 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 431 TDTYNVILKLYVNWDCEDKVRHTWEEMEKK--GMG---PD-QRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 431 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
..+|+.+...|...|++++|+..|++..+. ... |+ ..++..+..++...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356778888888888888888888877642 111 22 44677777788888888888888877653
No 220
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.77 E-value=0.72 Score=36.24 Aligned_cols=139 Identities=15% Similarity=0.237 Sum_probs=82.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHH
Q 048749 339 FKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWV 418 (536)
Q Consensus 339 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~ 418 (536)
-.|..++..++..+.... .+..-||-+|--....-+-+-..++++.+-... | +..|+....+...
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF-----D-------is~C~NlKrVi~C 78 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIF-----D-------ISKCGNLKRVIEC 78 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-------------GGG-S-THHHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhc-----C-------chhhcchHHHHHH
Confidence 457777777777777654 355666666665555555566666666554332 1 1223333322222
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048749 419 LERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMV 498 (536)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 498 (536)
+ ...+ .+...+...++.....|+-|...++..++.+. -.+++...-.+..+|.+-|+..++-+++++.-++|++
T Consensus 79 ~---~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 79 Y---AKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp H---HHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred H---HHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 2 2221 24566777888888999999999998888753 3678888888889999999999999999998888863
No 221
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.76 E-value=1.7 Score=40.37 Aligned_cols=164 Identities=13% Similarity=0.069 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhcCCHHH---HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048749 224 SAFQNLLLWLCRYKHVEV---AETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVN 300 (536)
Q Consensus 224 ~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 300 (536)
.++..++.++...+..+. |..+++.+...++....++-.-++.+.+.++.+.+.+++..|+..-.. ....+..++.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHH
Confidence 355667777777776544 555555565555555666666777777788899999999999876321 2334555554
Q ss_pred HH---HhcCCHhHHHHHHHHHHHcCCCCCHh--hHHHHHH---HHHhcCC------hHHHHHHHHHHHH-CCCCCCHHHH
Q 048749 301 AL---TKKGKLGTALRLFQAMWEKGRKPDVV--TCNCIID---ALCFKKR------IPEALEVLREMKN-RGCLPNVTTY 365 (536)
Q Consensus 301 ~~---~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~---~~~~~g~------~~~A~~~~~~m~~-~g~~p~~~~~ 365 (536)
.+ .... ...|...++.+....+.|... .=..++. ...+.++ .+...++++...+ .+.+.+..+-
T Consensus 164 ~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 44 3333 345666666666554555443 1111111 1122222 3344444553322 2333343332
Q ss_pred HHH-------HHHHHhcCCHHHHHHHHHHHH
Q 048749 366 NSL-------IKHLCKIKRMETVYEYLDEME 389 (536)
Q Consensus 366 ~~l-------i~~~~~~~~~~~A~~~~~~m~ 389 (536)
.++ ...+.+.++++.|.++|+-..
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 222 234567899999999988543
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.58 E-value=0.15 Score=49.29 Aligned_cols=66 Identities=6% Similarity=-0.077 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 428 KMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQ----RSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 428 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
+.+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|+..+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446788999999999999999999999998886 5664 35899999999999999999999999885
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.57 E-value=0.79 Score=45.99 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHhHHHHHHHHHHHcC---CCCCHhhHHHHHHHHHhcCChHH
Q 048749 270 LGNVYEAKRFWKDIIKSKCEPDSVTYATFV-NALTKKGKLGTALRLFQAMWEKG---RKPDVVTCNCIIDALCFKKRIPE 345 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~ 345 (536)
..+.+.|.++++.+... -|+...|...- +.+...|++++|++.|+...... .+.....+--+.-.+.-..++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45667777777777655 46655554433 44566777888877777654321 11122334445556777788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHhc
Q 048749 346 ALEVLREMKNRGCLPNVTTYNSLIK-HLCKIKRM-------ETVYEYLDEMEQK 391 (536)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~~li~-~~~~~~~~-------~~A~~~~~~m~~~ 391 (536)
|.+.|..+.+.+-- +..+|.-+.. ++...|+. ++|.++|.+....
T Consensus 324 A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 88888888764322 3444443333 33445666 7788888776543
No 224
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.55 E-value=1.2 Score=37.36 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=81.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc---CCCCCHhhH
Q 048749 254 GYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK---GRKPDVVTC 330 (536)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~ 330 (536)
.|++.--..|..+..+.|+..+|...|++...--..-|....-.+.++....+++..|...++.+.+. +-.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 45666666677777777787788777777665445556666666777777777777777777777664 23333 33
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 331 NCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDE 387 (536)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 387 (536)
-.+...+...|.+.+|+.-|+.....-..|....|.. ..+.+.|+.+++..-+..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~--e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYA--EMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHH--HHHHHhcchhHHHHHHHH
Confidence 4455667777777777777777766533333333332 334566655555443333
No 225
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.54 E-value=1.6 Score=43.32 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=108.7
Q ss_pred HHHHHhcCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 195 LNRYAAAHMVEEAIGVFDR-RKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNV 273 (536)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~-m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 273 (536)
.....-.|+++++.++.+. -.-..+ +..-.+.++.-+-+.|..+.|+++-. |..+ -.+...+.|++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~---rFeLAl~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVT--------DPDH---RFELALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHH---HHHHHHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHH---HhHHHHhcCCH
Confidence 3455667899998777752 111112 24557788899999999999998843 3332 23345588999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 274 YEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 274 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
+.|.++.++ ..+...|..|.....+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+..
T Consensus 335 ~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 999886644 34778999999999999999999999877543 567777899999998888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 354 KNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEM 388 (536)
Q Consensus 354 ~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 388 (536)
...| -+|....++.-.|+.++..+++.+.
T Consensus 400 ~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 7764 2556666777789999998888764
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.54 E-value=0.023 Score=40.94 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 225 AFQNLLLWLCRYKHVEVAETFFES 248 (536)
Q Consensus 225 ~~~~ll~~~~~~~~~~~a~~~~~~ 248 (536)
++..+...+...|++++|++.+++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444445555555555555555544
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=95.50 E-value=0.6 Score=38.56 Aligned_cols=87 Identities=8% Similarity=-0.002 Sum_probs=48.2
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 302 LTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381 (536)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A 381 (536)
+...|++++|..+|.-+...+.. +..-+..|..++-..+++++|+..|......+.. |...+--...+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 44566666666666665554322 3334455555555666666666666655433321 333333345566666666666
Q ss_pred HHHHHHHHh
Q 048749 382 YEYLDEMEQ 390 (536)
Q Consensus 382 ~~~~~~m~~ 390 (536)
...|....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666666654
No 228
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.49 E-value=1.1 Score=36.48 Aligned_cols=129 Identities=12% Similarity=0.179 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048749 119 TLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRY 198 (536)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~ 198 (536)
..++..++..+... +.+.....+++++.+.+ ..+....|.++..|++.+. .+..+.++.- .+......+++.|
T Consensus 7 ~~~~~~vv~~~~~~-~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~~-~~ll~~l~~~---~~~yd~~~~~~~c 79 (140)
T smart00299 7 PIDVSEVVELFEKR-NLLEELIPYLESALKLN--SENPALQTKLIELYAKYDP-QKEIERLDNK---SNHYDIEKVGKLC 79 (140)
T ss_pred cCCHHHHHHHHHhC-CcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHCH-HHHHHHHHhc---cccCCHHHHHHHH
Confidence 44555666666543 47888999999988775 3677889999999987643 4455555521 2222344577777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 199 AAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRY-KHVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
.+.+.++++..++.++.. +...+..+... ++++.|.+++... .+...|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~-----~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ-----NNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC-----CCHHHHHHHHHHHH
Confidence 777777777777766532 12333333333 6677777766552 25556666665544
No 229
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.46 E-value=0.2 Score=44.74 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=19.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 341 KRIPEALEVLREMKNRGCLPNVTTYNSLIKHLC 373 (536)
Q Consensus 341 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 373 (536)
+.++-....++.|.+.|+.-|..+|+.||+.+-
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfP 118 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFP 118 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCc
Confidence 444545555566666666666666666665543
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.31 E-value=2.6 Score=39.77 Aligned_cols=217 Identities=12% Similarity=0.070 Sum_probs=106.4
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHHh---cCC
Q 048749 304 KKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG-CLPNVTT--YNSLIKHLCK---IKR 377 (536)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~--~~~li~~~~~---~~~ 377 (536)
+.|+.+.|..+-+..-..- +--...+...+...|..|+++.|+++++.-.... +.+++.- -..|+.+-.. .-+
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 3455555555544443321 1123344555555555566666655555443221 1222111 1111111110 112
Q ss_pred HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 048749 378 METVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEM 457 (536)
Q Consensus 378 ~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 457 (536)
...|.+.-.+..+..+...|-.+.-...+-.-++...+-.+++.+=+.. |....+. +..+.+.|+ .+..-+++.
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gd--ta~dRlkRa 318 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGD--TALDRLKRA 318 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCC--cHHHHHHHH
Confidence 3334443333333222223332222222222244444445555554442 3333332 222344554 444444433
Q ss_pred HHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhh-hhhhhhhHHHHHhhh
Q 048749 458 EKK-GMGP-DQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKL-KERGEQGKKVIKLTS 529 (536)
Q Consensus 458 ~~~-g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~-~~~~~a~~~~~~~~~ 529 (536)
... .++| +..+--.+..+-...|++..|..--+.... ..|....|-++.++-... |+.+++...+.+-.+
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 321 2344 456666777888889999888776665554 578888898888887776 888888877776543
No 231
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.24 E-value=2.6 Score=39.26 Aligned_cols=131 Identities=19% Similarity=0.244 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhcCCC-CCCcHHHHHHHHHhcCCC----
Q 048749 344 PEALEVLREMKNRGCLPNVTTYNSLIKHLCK--IK----RMETVYEYLDEMEQKNGS-CLPNEITFNYLLKSLKKP---- 412 (536)
Q Consensus 344 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~----~~~~A~~~~~~m~~~~~~-~~p~~~~~~~ll~~~~~~---- 412 (536)
++...+++.|.+.|..-+..+|-+..-.... .. ...+|.++|+.|++..+- ..++...+..+|..-...
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l 158 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEEL 158 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHH
Confidence 3455566667777766665555442222221 11 345677777777776532 234556666666553221
Q ss_pred -ChHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048749 413 -EEVPWVLERMERNGCKMST--DTYNVILKLYVNWDC--EDKVRHTWEEMEKKGMGPDQRSYTVMIH 474 (536)
Q Consensus 413 -~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~ 474 (536)
+.++.+++.+.+.|+..+- ...+.++..+..... +.++.++++.+.+.|+++....|..+.-
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3445666667666665432 233333333322222 4477888888888888877777665543
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.19 E-value=0.22 Score=48.18 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 289 EPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV----VTCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 289 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
+.+...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677888888888888888888888887774 4443 35777888888888888888888888764
No 233
>PRK15331 chaperone protein SicA; Provisional
Probab=95.19 E-value=0.86 Score=37.66 Aligned_cols=89 Identities=11% Similarity=0.090 Sum_probs=63.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 048749 266 GWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE 345 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 345 (536)
-+-..|++++|..+|+-+...+ .-+..-|..|..++-..+++++|+..|......+. -|+..+-....+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3446788888888888877655 33455566666777777888888888887766543 355555566778888888888
Q ss_pred HHHHHHHHHHC
Q 048749 346 ALEVLREMKNR 356 (536)
Q Consensus 346 A~~~~~~m~~~ 356 (536)
|...|....+.
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 88888877763
No 234
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.16 E-value=3.3 Score=39.95 Aligned_cols=146 Identities=15% Similarity=0.166 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhh-HHHHH
Q 048749 257 IKTMNIILNGWCVLGNVYEAKRFWKDIIKSK-CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVT-CNCII 334 (536)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li 334 (536)
..+|...|..-.+..-++.|..+|-+..+.| +.+++..++++|.-++ .|+...|.++|+--... + ||... -.-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f-~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-F-PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-C-CCchHHHHHHH
Confidence 4567777787778888899999999999888 7788888899888665 57778888888765553 2 34333 34556
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcC
Q 048749 335 DALCFKKRIPEALEVLREMKNRGCLPN--VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLK 410 (536)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~ 410 (536)
..+...++-+.|..+|+....+ +..+ ...|..+|.-=.+-|++..+..+=+.|.+. .|...+...+...++
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~----~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL----VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH----cCcHhHHHHHHHHHh
Confidence 6677888889999999855432 1112 567888888888889998888888888774 466666666666654
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.95 E-value=2.6 Score=37.63 Aligned_cols=72 Identities=15% Similarity=0.052 Sum_probs=36.3
Q ss_pred HHHHHccCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048749 163 LDVLGRARRFVELIQVFDEMP-----DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLC 234 (536)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 234 (536)
+..-.+.|++++|.+.|+.+. .+-...+.-.++-++-+.+++++|+..+++....--.-....|...|.+++
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 333445666666666666665 222333444445555566666666666666554432222223444444443
No 236
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.87 E-value=1.6 Score=43.92 Aligned_cols=194 Identities=14% Similarity=0.092 Sum_probs=100.4
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHH
Q 048749 143 FKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGI-----LLNRYAAAHMVEEAIGVFDRRKE 216 (536)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~ 216 (536)
++.+.+++ ..|+... +...++-.|++.+|-++|.+-. ...-...|+- ...-+...|..++-..+.++--+
T Consensus 623 L~~~k~rg-e~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~ 698 (1081)
T KOG1538|consen 623 LEERKKRG-ETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD 698 (1081)
T ss_pred HHHHHhcC-CCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 34444443 4455432 3455666777777777777765 1111122221 12233344444444333332211
Q ss_pred c--CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH---------h-cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 217 F--GE-LDDLSAFQNLLLWLCRYKHVEVAETFFES---------E-KNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDI 283 (536)
Q Consensus 217 ~--g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---------~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 283 (536)
. ++ +|. +....+...|+.++|..+.-. + .+--..+..+...+...+.+...+..|-++|..|
T Consensus 699 WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 699 WARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred HhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 1 11 121 223334455555555444221 1 1111234445555555555667777777888776
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhh-----------HHHHHHHHHhcCChHHHHHHHHH
Q 048749 284 IKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVT-----------CNCIIDALCFKKRIPEALEVLRE 352 (536)
Q Consensus 284 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-----------~~~li~~~~~~g~~~~A~~~~~~ 352 (536)
-+. ..++......+++++|..+-+...+ +.||++. |.-.-.+|.+.|+..+|.+++++
T Consensus 774 gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQ 842 (1081)
T KOG1538|consen 774 GDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQ 842 (1081)
T ss_pred ccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHH
Confidence 432 2455666778888888887766554 3344331 23334577888888888888888
Q ss_pred HHHC
Q 048749 353 MKNR 356 (536)
Q Consensus 353 m~~~ 356 (536)
+...
T Consensus 843 Ltnn 846 (1081)
T KOG1538|consen 843 LTNN 846 (1081)
T ss_pred hhhh
Confidence 7653
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.83 E-value=1.6 Score=43.85 Aligned_cols=174 Identities=16% Similarity=0.103 Sum_probs=98.2
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCC---------HHHHHHHHHHHHh----cCCHH
Q 048749 139 AYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVN---------EKTYGILLNRYAA----AHMVE 205 (536)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~li~~~~~----~g~~~ 205 (536)
+.-+|+-+..- +|| ....++...+=.|+-+.+++++.......+ .-.|+.++..++. ....+
T Consensus 176 G~G~f~L~lSl--LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 176 GFGLFNLVLSL--LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHh--CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 34455555443 233 344555555556666666665555431111 1234444444443 34577
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHhc---CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 206 EAIGVFDRRKEFGELDDLSAFQN-LLLWLCRYKHVEVAETFFESEK---NEF-GYDIKTMNIILNGWCVLGNVYEAKRFW 280 (536)
Q Consensus 206 ~A~~~~~~m~~~g~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~---~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 280 (536)
.|.++++.+.+. -|+...|.. -...+...|+++.|.+.|+... ... +.....+--+.-.+.-.+++++|.+.|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 788888877764 355444433 3345566788888888887632 111 123344555666677788999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH-HHhcCCH-------hHHHHHHHHHHH
Q 048749 281 KDIIKSKCEPDSVTYATFVNA-LTKKGKL-------GTALRLFQAMWE 320 (536)
Q Consensus 281 ~~m~~~g~~~~~~~~~~li~~-~~~~g~~-------~~a~~~~~~m~~ 320 (536)
..+.+.. .-+...|.-+..+ +...|+. ++|.++|.+...
T Consensus 329 ~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8888754 2233444433333 3445666 788888887655
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=3.1 Score=37.87 Aligned_cols=50 Identities=22% Similarity=0.123 Sum_probs=24.2
Q ss_pred HHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 166 LGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRK 215 (536)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (536)
....|++.+|..+|+... .+.+...--.+..+|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 344555555555555444 23333444444555555555555555554443
No 239
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.76 E-value=5.8 Score=40.85 Aligned_cols=319 Identities=14% Similarity=0.120 Sum_probs=178.1
Q ss_pred CCCCCHHHHHH-----HHHh--ccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCH--HHHHH-HHHhCCC-C
Q 048749 117 ELTLTDDLIVN-----VINR--YRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRF--VELIQ-VFDEMPD-L 185 (536)
Q Consensus 117 ~~~~~~~~~~~-----~l~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~-~~~~~~~-~ 185 (536)
|+.++...+.. ++.+ .++.+..|+++-.|+.... .....+|.....-+.+..+. +++.+ +=+++.. .
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 56666554432 2222 2468999999999985532 22267788888887776322 23333 3333432 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC---------
Q 048749 186 VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGE----LDDLSAFQNLLLWLCRYKHVEVAETFFESEKNE--------- 252 (536)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------- 252 (536)
....+|..+.+.--..|+.+-|..+++.=...+. -.+...+...+.-+.+.|+.+....++-.+...
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888899999999988764322221 012223445566677788877776665554321
Q ss_pred ---CCCCHHHHHHHHH--------HHHhcCCHHHHHHHH--HHHHHC-CCCCCHHHHHHHHHHHHhcCCHh---------
Q 048749 253 ---FGYDIKTMNIILN--------GWCVLGNVYEAKRFW--KDIIKS-KCEPDSVTYATFVNALTKKGKLG--------- 309 (536)
Q Consensus 253 ---~~~~~~~~~~li~--------~~~~~g~~~~A~~~~--~~m~~~-g~~~~~~~~~~li~~~~~~g~~~--------- 309 (536)
.+.....|.-+++ .+-..++-.++...| +..... -+.+-........+++.+.....
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 1222223333322 001111111222211 110000 01111122233444455443311
Q ss_pred -HHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 310 -TALRLFQAMWEK-GRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDE 387 (536)
Q Consensus 310 -~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 387 (536)
+-+++.+.+... |.....-+.+--+.-+...|+..+|.++-.+.+ -||-..|..=+.+++..+++++-+++-+.
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 112222223222 333344455666677888999999999888775 37889999999999999999998887766
Q ss_pred HHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 048749 388 MEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWE 455 (536)
Q Consensus 388 m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 455 (536)
+.. ..-|.-+..+|-+.+...++-+.+.+.+-. .-.+.+|.+.|++.+|.++--
T Consensus 741 kks--------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 741 KKS--------PIGYLPFVEACLKQGNKDEAKKYIPRVGGL------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cCC--------CCCchhHHHHHHhcccHHHHhhhhhccCCh------HHHHHHHHHhccHHHHHHHHH
Confidence 532 344556667775555554444444442211 157888999999999887643
No 240
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.72 E-value=4.3 Score=39.16 Aligned_cols=147 Identities=11% Similarity=0.090 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCC--hHHHHHHHHHHCCCCCCHHH-HHHHH
Q 048749 362 VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPE--EVPWVLERMERNGCKMSTDT-YNVIL 438 (536)
Q Consensus 362 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~--~a~~~~~~~~~~~~~~~~~~-~~~li 438 (536)
..+|...|..-.+..-++.|..+|-++.+.+. +.++...+++++..++..+ -|.++|+.=... -||... -+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-VGHHVYIYCAFIEYYATGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-CCcceeeeHHHHHHHhcCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 34577778888888889999999999998874 7789999999999886554 456777643322 223333 35566
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhh
Q 048749 439 KLYVNWDCEDKVRHTWEEMEKKGMGPD--QRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKL 514 (536)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~ 514 (536)
.-+...++-..|..+|+...++ +.-+ ...|..+|.--..-|+...+..+-++|.+ +.|...+..+....+.-.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik 548 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhh
Confidence 7778889999999999955443 1123 56899999988999999999999888887 467666655555544433
No 241
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.59 E-value=2.1 Score=34.87 Aligned_cols=84 Identities=10% Similarity=0.087 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 048749 193 ILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGN 272 (536)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 272 (536)
.++..+...+.+.....+++.+...+ ..+...++.++..|++.+. +.....+.. ..+......++..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~-----~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN-----KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh-----ccccCCHHHHHHHHHHcCc
Confidence 44444444555555555555555544 2444455555555554422 222233321 0112222334444555555
Q ss_pred HHHHHHHHHHH
Q 048749 273 VYEAKRFWKDI 283 (536)
Q Consensus 273 ~~~A~~~~~~m 283 (536)
++++..++..+
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
No 242
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.50 E-value=5 Score=43.62 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=101.1
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHhcCCHHHHHH
Q 048749 169 ARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQN----LLLWLCRYKHVEVAET 244 (536)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~----ll~~~~~~~~~~~a~~ 244 (536)
.++++.|+.-+.++. ...|.-.++.--+.|.+.+|+.++ .|+...+.. ...-+.....+++|.-
T Consensus 893 L~ry~~AL~hLs~~~----~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal 960 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG----ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAAL 960 (1265)
T ss_pred HHHHHHHHHHHHHcC----ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 457777777777765 224555566666777788888776 455554444 4445566778888888
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 048749 245 FFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSV--TYATFVNALTKKGKLGTALRLFQAMWEKG 322 (536)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g 322 (536)
.|+...+ ..--+.+|-.+|+|.+|+.+-.++... .|.. +-..|+.-+...++.-+|-++..+....
T Consensus 961 ~Ye~~Gk--------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd- 1028 (1265)
T KOG1920|consen 961 MYERCGK--------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD- 1028 (1265)
T ss_pred HHHHhcc--------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-
Confidence 7776432 123467788889999999888877531 1222 2256777788888888888887776553
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048749 323 RKPDVVTCNCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 323 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
..-.+..||+...+++|+++-....
T Consensus 1029 -------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1029 -------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred -------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 2334455777777888877765544
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.50 E-value=4 Score=37.83 Aligned_cols=161 Identities=17% Similarity=0.155 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q 048749 329 TCNCIIDALCFKKRIP---EALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYL 405 (536)
Q Consensus 329 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~l 405 (536)
++..++.+|...+..+ +|.++++.+...... ...++-.-+..+.+.++.+.+.+.+..|...- .-....+..+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~---~~~e~~~~~~ 161 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV---DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc---ccccchHHHH
Confidence 4555666666655543 455555555433211 23333334455555667777777777776653 1122333333
Q ss_pred HHhc-----CCCChHHHHHHHHHHCCCCCCHH-HHHH-H---HHHHHccCC------hhHHHHHHHHHHH-CCCCCCHHH
Q 048749 406 LKSL-----KKPEEVPWVLERMERNGCKMSTD-TYNV-I---LKLYVNWDC------EDKVRHTWEEMEK-KGMGPDQRS 468 (536)
Q Consensus 406 l~~~-----~~~~~a~~~~~~~~~~~~~~~~~-~~~~-l---i~~~~~~g~------~~~A~~~~~~m~~-~g~~p~~~~ 468 (536)
+..+ .....+...+..+....+.|... .... + +....+.++ ++...++++...+ .+-+.+..+
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 3332 11234445555554433344332 1111 1 111112111 3334444443332 122333333
Q ss_pred H---HHHH----HHHHhcCCHHHHHHHHHHHH
Q 048749 469 Y---TVMI----HGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 469 ~---~~li----~~~~~~g~~~~A~~~~~~m~ 493 (536)
- .+|+ ..+.+.+++++|.++|+--.
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 2222 34567889999999887543
No 244
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.38 E-value=4.4 Score=37.79 Aligned_cols=126 Identities=13% Similarity=0.222 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHhcCCCC----CCHHHHHHHHHHHHhcCCH
Q 048749 204 VEEAIGVFDRRKEFGELDDLSAFQNLLLWLCR--YK----HVEVAETFFESEKNEFG----YDIKTMNIILNGWCVLGNV 273 (536)
Q Consensus 204 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~ 273 (536)
+++.+.+++.|.+.|+.-+..+|.+....... .. ....+..+|+.|++..+ ++..++..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788899999988888777664443333 11 23446666666654322 344444444433 22222
Q ss_pred ----HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CC--HhHHHHHHHHHHHcCCCCCHhhHH
Q 048749 274 ----YEAKRFWKDIIKSKCEPDSV-TYATFVNALTKK-GK--LGTALRLFQAMWEKGRKPDVVTCN 331 (536)
Q Consensus 274 ----~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~-g~--~~~a~~~~~~m~~~g~~p~~~~~~ 331 (536)
+.+..+|+.+.+.|...+-. -+.+-+-++... .. ...+.++++.+.+.|+++....|.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccccc
Confidence 34445555555545333221 122212122111 11 234555555555555555444443
No 245
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=1.1 Score=42.57 Aligned_cols=61 Identities=15% Similarity=0.031 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
+++.+.-+|.+.+++..|++.-......+ ++|+-..--=..+|...|+++.|+..|+.+++
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 44555555666666666666666655554 44555555555566666666666666666665
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.21 E-value=1.3 Score=40.74 Aligned_cols=151 Identities=12% Similarity=-0.042 Sum_probs=74.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHH
Q 048749 200 AAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDI----KTMNIILNGWCVLGNVYE 275 (536)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~ 275 (536)
..|+..+|-..++++.+ ..+.|..++...=.+|.-.|+.+.-...++++.....+|. .+-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34555555555555554 2355555555555566666665555555555433323333 222233333445666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCChHHHHHHHHH
Q 048749 276 AKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPD---VVTCNCIIDALCFKKRIPEALEVLRE 352 (536)
Q Consensus 276 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (536)
|++.-++..+.+ +-|..+-.++...+--.|++.++.++..+-...--..+ .+.|=...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 666665555444 34455555555666666666666665443222100000 01111112223445667777777763
No 247
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.64 Score=44.02 Aligned_cols=141 Identities=14% Similarity=0.109 Sum_probs=75.4
Q ss_pred HHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 048749 162 ILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEV 241 (536)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 241 (536)
-.+.|.+.|++..|...|++..... -|.+.-+.++..... ..-..++..+..++.+.+++..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l----------~~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~~~ 275 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFL----------EYRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEYKE 275 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHh----------hccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhHHH
Confidence 4456778888888888887754000 000000111111111 1122345556666667777777
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh-HHHHHHHHHHH
Q 048749 242 AETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLG-TALRLFQAMWE 320 (536)
Q Consensus 242 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~ 320 (536)
|.+.-+.....-+.|+.....-..+|...|+++.|+..|+.+.+.. +-|..+-+.++..--+..+.. ...++|..|..
T Consensus 276 Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 276 AIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7766666544445666666666777777777777777777776653 223333334444333333333 33566666655
Q ss_pred c
Q 048749 321 K 321 (536)
Q Consensus 321 ~ 321 (536)
.
T Consensus 355 k 355 (397)
T KOG0543|consen 355 K 355 (397)
T ss_pred c
Confidence 3
No 248
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=0.92 Score=46.94 Aligned_cols=182 Identities=12% Similarity=0.093 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDL--SAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG 266 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 266 (536)
.....-+..+.+...++-|+.+- +..+..++. .......+-+.+.|++++|...|-+.-..+.|.. +|.-
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~-----Vi~k 406 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE-----VIKK 406 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH-----HHHH
Confidence 35566777788888888887764 333333332 2333444556678999999888877443334433 4455
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHH
Q 048749 267 WCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEA 346 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 346 (536)
|.....+.+-..+++.+.+.|.. +...-..|+.+|.+.++.+.-.++.+.-. .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 66667777777888888888853 55556778899999999888776665443 2221 11245567777778878888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 347 LEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 347 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
..+-..... +......+ +-..+++++|++.+..+.-
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCH
Confidence 766655433 23333333 4456889999999987643
No 249
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.97 E-value=6.1 Score=40.75 Aligned_cols=180 Identities=16% Similarity=0.114 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-----HHccCCHHHHHHHHHhCCC-------CCCHHHHHHHHHHHHhcC-
Q 048749 136 WEAAYTFFKWVSREGDYSPGSNVFNAILDV-----LGRARRFVELIQVFDEMPD-------LVNEKTYGILLNRYAAAH- 202 (536)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~li~~~~~~g- 202 (536)
...|.++++.+.+.+ +...-..+..+ ++..++++.|...|+.+.. ........-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 456778888777766 33333333333 3345678888887776632 223334555666666543
Q ss_pred ----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHH--hcCCHH
Q 048749 203 ----MVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCR-YKHVEVAETFFESE-KNEFGYDIKTMNIILNGWC--VLGNVY 274 (536)
Q Consensus 203 ----~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~--~~g~~~ 274 (536)
+.+.|+.+|.+.-+.| .|+...+...+..... ..+...|.++|... ..| ..+...+.+++.... ...+.+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCCHH
Confidence 4566777777777766 4454443333322222 23456677777664 333 222222222222111 234566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 048749 275 EAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGR 323 (536)
Q Consensus 275 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 323 (536)
.|..++++..+.| .|...--...+..+.. +..+.+.-.+..+.+.|.
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 7777777776666 2222222222233333 566666666666555543
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.86 E-value=1.2 Score=35.91 Aligned_cols=80 Identities=16% Similarity=0.109 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP-----DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLL 231 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 231 (536)
..+..-.....+.|++++|.+.|+.+. .+-...+.-.++.+|.+.+++++|+..+++.++..-.--...|...+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 334444455556777777777777776 233445556677777777778887777777777653222344555555
Q ss_pred HHHhc
Q 048749 232 WLCRY 236 (536)
Q Consensus 232 ~~~~~ 236 (536)
+++..
T Consensus 91 gL~~~ 95 (142)
T PF13512_consen 91 GLSYY 95 (142)
T ss_pred HHHHH
Confidence 55443
No 251
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.75 E-value=0.6 Score=42.54 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKE-----FGELDDLSAFQN 228 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~ 228 (536)
..++..++..+..+|+++.+...++++. .+-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4567778888899999999999999887 778899999999999999999999999988764 588888877766
Q ss_pred HHHH
Q 048749 229 LLLW 232 (536)
Q Consensus 229 ll~~ 232 (536)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6555
No 252
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.71 E-value=7.2 Score=37.83 Aligned_cols=370 Identities=12% Similarity=0.097 Sum_probs=204.9
Q ss_pred hhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCC------------CHHHHHHHHHHHHccCCHHHHHHHHH
Q 048749 114 NQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSRE-GDYSP------------GSNVFNAILDVLGRARRFVELIQVFD 180 (536)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~-~~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~ 180 (536)
+..|..+....+..++....+++..|++.+..-..+ .+..+ |-..-+..+..+...|++.+++.+++
T Consensus 73 ~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn 152 (549)
T PF07079_consen 73 QQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILN 152 (549)
T ss_pred HhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 345666666677777777777899998877654332 22222 11222455677888999999999999
Q ss_pred hCC-------CCCCHHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHc------CCCCCHHHHHHHHHH
Q 048749 181 EMP-------DLVNEKTYGILLNRYAAAHM---------------VEEAIGVFDRRKEF------GELDDLSAFQNLLLW 232 (536)
Q Consensus 181 ~~~-------~~~~~~~~~~li~~~~~~g~---------------~~~A~~~~~~m~~~------g~~~~~~~~~~ll~~ 232 (536)
+|. ..-+..+||.++-.+.+.=- ++.++-...+|... .+.|-...+..++.-
T Consensus 153 ~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqh 232 (549)
T PF07079_consen 153 RIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQH 232 (549)
T ss_pred HHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHH
Confidence 887 23677888886655554311 11222222222211 122333333333322
Q ss_pred HHhcC--CHHHHHHHHHHh-cCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHh
Q 048749 233 LCRYK--HVEVAETFFESE-KNEFGYDIK-TMNIILNGWCVLGNVYEAKRFWKDIIKSKCE----PDSVTYATFVNALTK 304 (536)
Q Consensus 233 ~~~~~--~~~~a~~~~~~~-~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~li~~~~~ 304 (536)
..-.. +..--.++++.. ..-+.|+.. +...|+..+.. +.+++..+-+.+....+. .=+.+|..++....+
T Consensus 233 lfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 233 LFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 111112222221 112334332 23334444433 566666665555443211 124678889999999
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHhhH-------HHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH---H
Q 048749 305 KGKLGTALRLFQAMWEKGRKPDVVTC-------NCIIDALCF----KKRIPEALEVLREMKNRGCLPNVTTYNSLI---K 370 (536)
Q Consensus 305 ~g~~~~a~~~~~~m~~~g~~p~~~~~-------~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li---~ 370 (536)
.++...|.+.+.-+.. +.|+...- ..+.+..|. .-+..+-+.+++......+. ......-|+ .
T Consensus 311 ~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak 387 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAK 387 (549)
T ss_pred HHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHH
Confidence 9999999988877665 34443321 122233331 11233445555555554332 111222222 2
Q ss_pred HHHhcCC-HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHh----cCC------CChHHHHHHHHHHCCCCCC----HHHHH
Q 048749 371 HLCKIKR-METVYEYLDEMEQKNGSCLPNEITFNYLLKS----LKK------PEEVPWVLERMERNGCKMS----TDTYN 435 (536)
Q Consensus 371 ~~~~~~~-~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~----~~~------~~~a~~~~~~~~~~~~~~~----~~~~~ 435 (536)
-+-+.|. -++|+.+++.+.+-. .-|...-|.+... |.. .....++-+-+.+.|++|- ...-|
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft---~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian 464 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFT---NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIAN 464 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHH
Confidence 3444555 788999999988743 2344444444332 211 1223344455667888773 44555
Q ss_pred HHHHH--HHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 436 VILKL--YVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 436 ~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
.|.++ +...|++.++.-.-..+.+ +.|++.+|..+.-++....++++|+.++.++-
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 56554 4468999988776555555 58999999999999999999999999998753
No 253
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.64 E-value=2.6 Score=33.98 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=22.4
Q ss_pred hcCCHhHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 304 KKGKLGTALRLFQAMWEKGRKP---DVVTCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
+.|++++|.+.|+.+..+ .+. ....--.++.+|.+.|++++|...+++.++.
T Consensus 22 ~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 444444444444444443 111 1122333444444555555555555544443
No 254
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.61 E-value=0.91 Score=41.39 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-----cCCCCCHhhHHH
Q 048749 258 KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE-----KGRKPDVVTCNC 332 (536)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 332 (536)
.++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345556666666666666666666666654 44566666666777777776666666666554 255665555444
Q ss_pred HHHH
Q 048749 333 IIDA 336 (536)
Q Consensus 333 li~~ 336 (536)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.56 E-value=2.6 Score=37.96 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcC-CCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 297 TFVNALTKKGKLGTALRLFQAMWEKG-RKP-DVVTCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 297 ~li~~~~~~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
.|..++...|++++|..+|..+.+.- -.| -+..+--|..+..+.|+.++|..+|+++.+
T Consensus 183 WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 183 WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444444444444444444444421 001 112333333444444444444444444443
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.52 E-value=3 Score=32.84 Aligned_cols=89 Identities=13% Similarity=0.035 Sum_probs=49.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCCCHh---hHHHHHHHHHhcCC
Q 048749 267 WCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK-GRKPDVV---TCNCIIDALCFKKR 342 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~---~~~~li~~~~~~g~ 342 (536)
.+..|+.+.|++.|.+.+..- +.....||.-..++.-.|+.++|++=+++..+. |-. +.. .|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 445666666666666665442 334556666666666666666666666666553 211 111 12222334556667
Q ss_pred hHHHHHHHHHHHHCC
Q 048749 343 IPEALEVLREMKNRG 357 (536)
Q Consensus 343 ~~~A~~~~~~m~~~g 357 (536)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777766666665544
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=6 Score=36.10 Aligned_cols=144 Identities=13% Similarity=0.055 Sum_probs=88.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 048749 197 RYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDI-KTMNIILNGWCVLGNVYE 275 (536)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~ 275 (536)
.....|++.+|..+|....... +-+...-..+..+|...|+.+.|..++..+......+. .....-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4567788999999998887765 33345566788889999999999999988754332221 121222333444444333
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHhcCChH
Q 048749 276 AKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK--GRKPDVVTCNCIIDALCFKKRIP 344 (536)
Q Consensus 276 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~ 344 (536)
...+-...... +-|...-..+...+...|+.++|++.+-.+.++ |.. |...-..++..+.-.|..+
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 33333333321 236666667777788888888888777666654 333 4455566666666555433
No 258
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.30 E-value=4.2 Score=33.86 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=29.9
Q ss_pred HHhcCCHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 233 LCRYKHVEVAETFFESEK-NEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
+...|.++++....+.+. .+-+.-...-.+|.-+-.+.|++.+|..+|.++...
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 345566666666555542 222333344455555555677777777777666554
No 259
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.25 E-value=4.3 Score=33.91 Aligned_cols=135 Identities=14% Similarity=0.114 Sum_probs=75.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCC-CChHHHHHHHHHHC
Q 048749 347 LEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKK-PEEVPWVLERMERN 425 (536)
Q Consensus 347 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~-~~~a~~~~~~~~~~ 425 (536)
.++++.+.+.|+.|+...|..+|+.+.+.|++.....++ ..+ +.+|.......+-.++. ...+.++--.|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~--Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYH--VIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhc--ccCCcHHHHHHHHHhHccChHHHHHHHHHHHH
Confidence 345555566677777777777777777777655543333 333 44555444444433332 23333333333331
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 426 GCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 426 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
- ...+..++..+...|++-+|.++.+..... +......++.+-.+.+|...-..+++-..++
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0 124566777788888888888887665332 2223345667777777766655555555544
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.01 E-value=2.4 Score=39.16 Aligned_cols=153 Identities=13% Similarity=0.052 Sum_probs=108.6
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHhHH
Q 048749 235 RYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS---KCEPDSVTYATFVNALTKKGKLGTA 311 (536)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~a 311 (536)
-.|...+|...++++...+|.|...++..=.+|...|+.+.-...++++... +++-....-..+.-++...|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4577777778888888888999999999999999999999999999988754 2222222333344455678999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 312 LRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCL---PNVTTYNSLIKHLCKIKRMETVYEYLDEM 388 (536)
Q Consensus 312 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~~~~~~A~~~~~~m 388 (536)
++.-++..+.+ +.|...-.++...+--.|+..++.+...+-...=-. .-..-|-...-.+...+.++.|+++|+.-
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 99888887753 346667777888888899999998877654321000 01222333334456678999999999754
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.87 E-value=0.45 Score=29.54 Aligned_cols=29 Identities=17% Similarity=0.183 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFG 218 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (536)
+|..+...|.+.|++++|.++|++.++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666666666543
No 262
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.70 E-value=3.7 Score=42.80 Aligned_cols=176 Identities=16% Similarity=0.191 Sum_probs=111.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048749 226 FQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIIL----NGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNA 301 (536)
Q Consensus 226 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 301 (536)
...-++.+++...++.|..+-+.-.. |......+. +-+-+.|++++|...|-+-+.. ++| ..+|.-
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 34566777788888888777655332 333333333 3344688888888877665421 223 235666
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 302 LTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381 (536)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A 381 (536)
|....++.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 66777777778888888888876 45556678888888888888776666554 2221 11234456667777777777
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHH
Q 048749 382 YEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERM 422 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~ 422 (536)
..+-.+.. -+......++...++..+|.+.++.+
T Consensus 483 ~~LA~k~~-------~he~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFK-------KHEWVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhc-------cCHHHHHHHHHHhcCHHHHHHHHhcC
Confidence 76655532 24556667777777777776665543
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.65 E-value=0.27 Score=30.54 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHH
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILL 195 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li 195 (536)
.++..+...|.+.|++++|+++|++.. .+.|...|..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 356777788888888888888888877 566666666554
No 264
>PRK11906 transcriptional regulator; Provisional
Probab=92.61 E-value=11 Score=36.94 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=58.5
Q ss_pred CHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048749 171 RFVELIQVFDEMP-----DLVNEKTYGILLNRYAAA---------HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRY 236 (536)
Q Consensus 171 ~~~~A~~~~~~~~-----~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 236 (536)
..+.|..+|.+.. ++.....|..+..++... ....+|.++-++..+.+ +.|..+...+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3456677777655 222244444444333321 22445555555555555 45555555555555555
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 237 KHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIK 285 (536)
Q Consensus 237 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 285 (536)
++++.|...|++...-.+-...+|....-...-.|+.++|.+.+++..+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5566666666664333233344444444444455666666666666443
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.59 E-value=4.1 Score=32.09 Aligned_cols=90 Identities=13% Similarity=0.004 Sum_probs=44.6
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHh
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSV---TYATFVNALTKKGKLG 309 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~ 309 (536)
+...|+++.|.+.|.+...-.+.....||.-..++--.|+.++|++-+++..+..-..+.. .|.--...|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 3455555555555555433334455556655555555666666655555554432122221 2222223344556666
Q ss_pred HHHHHHHHHHHcC
Q 048749 310 TALRLFQAMWEKG 322 (536)
Q Consensus 310 ~a~~~~~~m~~~g 322 (536)
.|..=|+..-+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 6665555555444
No 266
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.45 E-value=6.7 Score=34.02 Aligned_cols=83 Identities=17% Similarity=-0.029 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNR--YAAAHMVEEAIGVF 211 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~ 211 (536)
|-+..|+--|....... +.-+.+||.+.--+...|+++.|.+.|+.........-|..+=++ +--.|++.-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 44555555555555532 334778888888888999999999999887722222223332222 23457777777766
Q ss_pred HHHHHcC
Q 048749 212 DRRKEFG 218 (536)
Q Consensus 212 ~~m~~~g 218 (536)
...-+.+
T Consensus 157 ~~fYQ~D 163 (297)
T COG4785 157 LAFYQDD 163 (297)
T ss_pred HHHHhcC
Confidence 5555443
No 267
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.41 E-value=1.5 Score=39.31 Aligned_cols=95 Identities=20% Similarity=0.094 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCC---CCHHHHHHH
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD---LSAFQNLLLWLCRYKHVEVAETFFESEKNEFG---YDIKTMNII 263 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l 263 (536)
.|+.-+..+ ..|++..|...|...++.. +.+ ...+--|..++...|++++|..+|..+.+..+ .-...+--|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 355544433 3444666666666555532 111 22233355555555555555555555432222 122344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 048749 264 LNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
.....+.|+.++|...|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 44455555555555555555543
No 268
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.08 E-value=0.94 Score=33.35 Aligned_cols=63 Identities=14% Similarity=0.061 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048749 203 MVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN 265 (536)
Q Consensus 203 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 265 (536)
+.-++.+-++.+....+.|++....+.+.+|.+.+++..|.++|+.++.+...+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 344566677777777888888888888888888888888888888876544444445555443
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.06 E-value=8.6 Score=34.41 Aligned_cols=175 Identities=14% Similarity=0.121 Sum_probs=94.9
Q ss_pred HHhcCCHhHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----
Q 048749 302 LTKKGKLGTALRLFQAMWEKG--RKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKI---- 375 (536)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---- 375 (536)
-.+.|++++|.+.|+.+..+. -+-...+.-.++.++.+.+++++|+..+++....-..-....|-.-|.+++.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 345677777777777776541 11123445556666777777777777777776543222223333334443321
Q ss_pred ---CCH---HHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhH
Q 048749 376 ---KRM---ETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDK 449 (536)
Q Consensus 376 ---~~~---~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 449 (536)
.+. ..|+.-|++.+..- || .+-+..+-..|....-. =...=..+.+-|.+.|.+..
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ry----Pn-------------S~Ya~dA~~~i~~~~d~-LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRY----PN-------------SRYAPDAKARIVKLNDA-LAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHC----CC-------------CcchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhcChHH
Confidence 122 23333344444433 22 21111111222111000 01112346678889999999
Q ss_pred HHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 450 VRHTWEEMEKKGMGPD---QRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 450 A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
|..-+++|.+. .+-+ ...+-.|..+|...|-.++|...-+-+..+
T Consensus 186 A~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 186 AINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 99999999886 2222 234566678888899988888876665543
No 270
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.87 E-value=15 Score=36.95 Aligned_cols=81 Identities=11% Similarity=0.158 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGR-ARRFVELIQVFDEMP-----DLVNEKTYGILLNRYAAAHMVEEA 207 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A 207 (536)
|..+.+.++|+..... ++.+...|...+..+.. .|+.+...+.|+... .-.+...|...|.--...+++...
T Consensus 93 g~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v 170 (577)
T KOG1258|consen 93 GNAENSVKVFERGVQA--IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRV 170 (577)
T ss_pred hhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHH
Confidence 5788889999998874 67778888777766654 678888888888876 334556889999888888889999
Q ss_pred HHHHHHHHH
Q 048749 208 IGVFDRRKE 216 (536)
Q Consensus 208 ~~~~~~m~~ 216 (536)
..+|++.++
T Consensus 171 ~~iyeRile 179 (577)
T KOG1258|consen 171 ANIYERILE 179 (577)
T ss_pred HHHHHHHHh
Confidence 999999886
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.71 E-value=8.6 Score=33.68 Aligned_cols=204 Identities=17% Similarity=0.068 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH-
Q 048749 188 EKTYGILLNRYAAAHMVEEAIGVFDRRKEF-GELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN- 265 (536)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~- 265 (536)
...+......+...+.+..+...+...... ........+......+...+....+...+.........+.........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 345555566666666666666666555542 223344445555555555666666666666543221212222222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh
Q 048749 266 GWCVLGNVYEAKRFWKDIIKSKC--EPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRI 343 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 343 (536)
.+...|+++.|...+.+...... ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 56667777777777777644211 0122333333344556677777777777766642111345566666667777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 344 PEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 344 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
+.|...+......... ....+..+...+...+..+.+...+.......
T Consensus 219 ~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 219 EEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777776654211 13333444444445566777777777666644
No 272
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.63 E-value=12 Score=35.21 Aligned_cols=125 Identities=14% Similarity=0.081 Sum_probs=54.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCCCHh-hHH-
Q 048749 263 ILNGWCVLGNVYEAKRFWKDIIKSK-----CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK----GRKPDVV-TCN- 331 (536)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~-~~~- 331 (536)
+..++.-.+.++++++.|+...+-. .-....++..|-+.|.+..++++|.-+.....+. ++. |.. -|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~ 206 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRA 206 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHH
Confidence 3344444455555555555443311 0111234555555555555555555443333221 111 111 111
Q ss_pred ----HHHHHHHhcCChHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 332 ----CIIDALCFKKRIPEALEVLREMK----NRGCLP-NVTTYNSLIKHLCKIKRMETVYEYLDEM 388 (536)
Q Consensus 332 ----~li~~~~~~g~~~~A~~~~~~m~----~~g~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m 388 (536)
.|.-++...|.+..|.+.-++.. ..|-.+ -......+.+.|...|+.|.|+.-|++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 12234445555555555555442 222211 1223334455566666666666655543
No 273
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.45 E-value=9.2 Score=33.50 Aligned_cols=202 Identities=18% Similarity=0.143 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048749 257 IKTMNIILNGWCVLGNVYEAKRFWKDIIKS-KCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIID 335 (536)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 335 (536)
...+......+...+++..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344555555555566666665555555431 113334444455555555555666666666555532222 111112222
Q ss_pred -HHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCC
Q 048749 336 -ALCFKKRIPEALEVLREMKNRGC--LPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKP 412 (536)
Q Consensus 336 -~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~ 412 (536)
.+...|+++.|...+.+...... ......+......+...++.+.+...+....... ++.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~------------- 200 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN----PDD------------- 200 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC----ccc-------------
Confidence 56666666666666666644211 0122333333333555666666666666665543 110
Q ss_pred ChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 413 EEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHE 491 (536)
Q Consensus 413 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 491 (536)
....+..+...+...++++.|...+...... .|+ ...+..+...+...|..+++...+.+
T Consensus 201 -----------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (291)
T COG0457 201 -----------------DAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEK 261 (291)
T ss_pred -----------------chHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHH
Confidence 3445555566666666777777777766654 232 33444444444455667777777766
Q ss_pred HHHC
Q 048749 492 MRLK 495 (536)
Q Consensus 492 m~~~ 495 (536)
....
T Consensus 262 ~~~~ 265 (291)
T COG0457 262 ALEL 265 (291)
T ss_pred HHHh
Confidence 6653
No 274
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.26 E-value=5.6 Score=36.29 Aligned_cols=119 Identities=15% Similarity=0.145 Sum_probs=81.0
Q ss_pred CCCcHHHHHHHHHhcCC-----CChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-CCCCCHH
Q 048749 395 CLPNEITFNYLLKSLKK-----PEEVPWVLERMER-NGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK-GMGPDQR 467 (536)
Q Consensus 395 ~~p~~~~~~~ll~~~~~-----~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~ 467 (536)
+.-|..+...++..... .....++.+.+.. .+-.++..+...++..++..+++++..++|+..... +..-|..
T Consensus 160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~r 239 (292)
T PF13929_consen 160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPR 239 (292)
T ss_pred eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCc
Confidence 33445555555554422 1222344444443 445778888999999999999999999999988765 5667889
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH-----HHCCCCCcHHHHHHHHHHHHh
Q 048749 468 SYTVMIHGLYDKGRLEDALSYFHEM-----RLKGMVPEPRTGILVNDMNIK 513 (536)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~~~~~m-----~~~g~~p~~~t~~~l~~~~~~ 513 (536)
.|..+|......|+..-...+.++= .+.|+..++.....+.+.+.+
T Consensus 240 pW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 240 PWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred hHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 9999999999999976666555431 233566666666666665544
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.26 E-value=0.56 Score=27.59 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 468 SYTVMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677788888888888888888754
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.17 E-value=8 Score=32.28 Aligned_cols=136 Identities=10% Similarity=0.069 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHh-hHHHH
Q 048749 256 DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPD-SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVV-TCNCI 333 (536)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l 333 (536)
+...|..-+. .++.+..++|+.-|.++.+.|...= +..-.-+.....+.|+...|...|+++-...-.|-.. -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3344544444 3467788888888888887763211 2222333445677888888999898887754444433 11222
Q ss_pred --HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 334 --IDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 334 --i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
...+...|.++......+-+-..+-+.-...-.+|--+-.+.|++.+|.+.|..+....
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 12345778888887777776554433344445566667778899999999998887755
No 277
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.13 E-value=3.4 Score=35.18 Aligned_cols=62 Identities=10% Similarity=0.155 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPD--SVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456666667777777777777777665433322 23455566666666666666666655544
No 278
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.11 E-value=3.8 Score=41.01 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=96.1
Q ss_pred ccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 168 RARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFE 247 (536)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 247 (536)
-.|+++.|..++..++ ....+.++..+.+.|..++|+++- +|..- -.....+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~----k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP----KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCc----hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHH
Confidence 3566666666555553 335666777777777777776542 22221 1223456788888877766
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH
Q 048749 248 SEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV 327 (536)
Q Consensus 248 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 327 (536)
+.. +..-|..|.++....|++..|.+.|.... -|..|+-.+...|+-+....+-....+.|..
T Consensus 662 e~~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~--- 724 (794)
T KOG0276|consen 662 EAN-----SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKN--- 724 (794)
T ss_pred hhc-----chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHHHHHHHHHHhhccc---
Confidence 543 56668888888888888888888886654 2556666677777776666665565555543
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 328 VTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
|....+|...|+++++.+++..-
T Consensus 725 ---N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 ---NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---chHHHHHHHcCCHHHHHHHHHhc
Confidence 23334566778888888777654
No 279
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.81 E-value=0.85 Score=33.97 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048749 206 EAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN 265 (536)
Q Consensus 206 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 265 (536)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+.++.+..+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 556666777777788888888888888888888888888888875544433335555443
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.66 E-value=0.69 Score=27.20 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRK 215 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (536)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777643
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.40 E-value=8.9 Score=32.67 Aligned_cols=59 Identities=3% Similarity=-0.055 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC-CC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP-DL----VNEKTYGILLNRYAAAHMVEEAIGVFDRRK 215 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (536)
..+..+.+.|.+.|+.+.|.+.|.++. .. .-...+-.+|+.....+++..+...+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456677777777777777777777776 11 122345666777777777777777666554
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.40 E-value=17 Score=34.86 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 430 STDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGP---DQRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 430 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
...+|..+...+.+.|.++.|...+..+...+... ++...-.-...+...|+.++|+..+++.+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566667777777777777777777766543111 222333334455566777777777766665
No 283
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.74 E-value=18 Score=34.09 Aligned_cols=126 Identities=12% Similarity=0.071 Sum_probs=63.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-cH-HHHH--
Q 048749 333 IIDALCFKKRIPEALEVLREMKNRGC-----LPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLP-NE-ITFN-- 403 (536)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p-~~-~~~~-- 403 (536)
+-.++...+.++++++.|+...+.-. .....+|-.|-..|.+..++++|.-+..+..+.-..+.. |. .-|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44455555566666666665543211 112334556666666666666666555444332110111 11 1111
Q ss_pred ------HHHHhcCCCChHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 048749 404 ------YLLKSLKKPEEVPWVLERME----RNGCKM-STDTYNVILKLYVNWDCEDKVRHTWEEME 458 (536)
Q Consensus 404 ------~ll~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 458 (536)
.-++..++.++|.+.-++.. ..|-.+ -......+.+.|-..|+.+.|+.-|+...
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 11223356666665444433 344222 23344567778888888888877776543
No 284
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.15 E-value=16 Score=32.53 Aligned_cols=206 Identities=10% Similarity=0.058 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
...|..-..+|....++++|...+.+.. ...+...|. - ..-++.|.-+.++|.+.. --...|......|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-A------AKayEqaamLake~~kls--Evvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-A------AKAYEQAAMLAKELSKLS--EVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-H------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHH
Confidence 3445555566667777777777666554 111111111 1 122344444444444321 1123455566677
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CC--CCCCHHHHHHHHHHHHhcCCH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIK---SK--CEPDSVTYATFVNALTKKGKL 308 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g--~~~~~~~~~~li~~~~~~g~~ 308 (536)
..+|.++.|-..+++..+ ....-++++|++++++... .+ .+.-...+..+-+.+.+..++
T Consensus 102 ~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 777777777666665311 0122334445554444321 11 111122344445556666666
Q ss_pred hHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 048749 309 GTALRLFQAMWEK----GRKPD-VVTCNCIIDALCFKKRIPEALEVLREMKNRG---CLPNVTTYNSLIKHLCKIKRMET 380 (536)
Q Consensus 309 ~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~~~~~~ 380 (536)
++|-..+..-... .-.++ -..|...|-.|....++..|...++.--+.+ -.-+..+...|+.+|- .|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHH
Confidence 6655444332221 11112 1234455555666678888888887643321 1224566667777663 466666
Q ss_pred HHHHHH
Q 048749 381 VYEYLD 386 (536)
Q Consensus 381 A~~~~~ 386 (536)
+.+++.
T Consensus 246 ~~kvl~ 251 (308)
T KOG1585|consen 246 IKKVLS 251 (308)
T ss_pred HHHHHc
Confidence 655543
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.88 E-value=0.52 Score=27.34 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHH
Q 048749 153 SPGSNVFNAILDVLGRARRFVELI 176 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~~~~A~ 176 (536)
+.+..+|+.+..+|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 456777777777777777777765
No 286
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.55 E-value=17 Score=32.27 Aligned_cols=57 Identities=12% Similarity=0.217 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 432 DTYNVILKLYVNWDCEDKVRHTWEEMEKKG---MGPDQRSYTVMIHGLYDKGRLEDALSYF 489 (536)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~ 489 (536)
..|...|-.|....++..|...++.--..+ -.-+..+...|+.+|- .||.+++..++
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 346666777777788889999888754431 1235567778887774 47777766544
No 287
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.53 E-value=35 Score=35.84 Aligned_cols=73 Identities=19% Similarity=0.036 Sum_probs=46.2
Q ss_pred HccCChhHHHHHHHHHHHCC--CC----CCHHHHHHHHHHH--HhcCCHHHHHHHHH--------HHHHCCCCCcHHHHH
Q 048749 442 VNWDCEDKVRHTWEEMEKKG--MG----PDQRSYTVMIHGL--YDKGRLEDALSYFH--------EMRLKGMVPEPRTGI 505 (536)
Q Consensus 442 ~~~g~~~~A~~~~~~m~~~g--~~----p~~~~~~~li~~~--~~~g~~~~A~~~~~--------~m~~~g~~p~~~t~~ 505 (536)
+-.|++..|...++.|.+.. .+ .....+..++.|. ...|+.+.|+..|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 45688989999999888641 11 1223444445443 35599999999997 555556666666665
Q ss_pred HHHHHHHhh
Q 048749 506 LVNDMNIKL 514 (536)
Q Consensus 506 ~l~~~~~~~ 514 (536)
.+-.+.+..
T Consensus 452 ~LNl~~I~~ 460 (608)
T PF10345_consen 452 ALNLAIILQ 460 (608)
T ss_pred HHHHHHHhH
Confidence 544444443
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.41 E-value=13 Score=30.73 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=7.7
Q ss_pred hcCCHHHHHHHHHHHH
Q 048749 269 VLGNVYEAKRFWKDII 284 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~ 284 (536)
+.|++.+|.++|+++.
T Consensus 56 ~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 56 VRGDWDDALRLLRELE 71 (160)
T ss_pred HhCCHHHHHHHHHHHh
Confidence 4444555555554443
No 289
>PRK11906 transcriptional regulator; Provisional
Probab=88.31 E-value=28 Score=34.33 Aligned_cols=111 Identities=9% Similarity=-0.017 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHH
Q 048749 272 NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPD-VVTCNCIIDALCFKKRIPEALEVL 350 (536)
Q Consensus 272 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 350 (536)
+..+|.++-+...+.+ +-|..+...+..+....++++.|..+|++.... .|| ..+|......+.-+|+.++|.+.+
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445666666666655 456666666666666666677777777776663 333 223333333345567777777777
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 351 REMKNRGCLP-NVTTYNSLIKHLCKIKRMETVYEYLD 386 (536)
Q Consensus 351 ~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~A~~~~~ 386 (536)
++..+....- -.......|+.|+. ...+.|.++|-
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 431 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYY 431 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHh
Confidence 7755442111 12222223334443 33555555544
No 290
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.06 E-value=21 Score=32.65 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 295 YATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 295 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
++...+.|...|.+.+|.++.+..... -+.+...+-.++..++..|+--.|.+-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344555666667777777666666554 2335555666666677777655555555554
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.56 E-value=1.6 Score=25.03 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 468 SYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666654
No 292
>PRK09687 putative lyase; Provisional
Probab=87.05 E-value=25 Score=32.54 Aligned_cols=231 Identities=13% Similarity=0.037 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMV----EEAIGVFDRRKEFGELDDLSAFQNLL 230 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~~~~~~~~ll 230 (536)
|..+....+..+...|.. ++...+..+....|...-...+.++.+.|+. .++...+..+... .++..+-...+
T Consensus 36 d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQ-DVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CHHHHHHHHHHHHhcCcc-hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 444555555555555542 2223333333234555555666666666652 4566666555332 35555555555
Q ss_pred HHHHhcCCH-----HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048749 231 LWLCRYKHV-----EVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKK 305 (536)
Q Consensus 231 ~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 305 (536)
.++...+.. ..+...+.... ..++..+-...+.++++.|+ +.|...+-.+.+ .+|...-...+.++.+.
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~--~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITA--FDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHh--hCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcC
Confidence 555444321 12222222211 12355666666777777666 445555555554 23444444455555554
Q ss_pred C-CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 306 G-KLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEY 384 (536)
Q Consensus 306 g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~ 384 (536)
+ ....+...+..+.. .++..+-...+.++.+.|+ ..|+..+-...+.+ + .....+.++...|.. +|...
T Consensus 187 ~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~ 256 (280)
T PRK09687 187 KYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPV 256 (280)
T ss_pred CCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHH
Confidence 3 13345555555443 3466666677777777777 44555555555432 2 233566677777774 57777
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHh
Q 048749 385 LDEMEQKNGSCLPNEITFNYLLKS 408 (536)
Q Consensus 385 ~~~m~~~~~~~~p~~~~~~~ll~~ 408 (536)
+..+.+.. ||...-...+.+
T Consensus 257 L~~l~~~~----~d~~v~~~a~~a 276 (280)
T PRK09687 257 LDTLLYKF----DDNEIITKAIDK 276 (280)
T ss_pred HHHHHhhC----CChhHHHHHHHH
Confidence 77776643 454444444433
No 293
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.42 E-value=25 Score=31.74 Aligned_cols=179 Identities=9% Similarity=0.127 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCC
Q 048749 134 FDWEAAYTFFKWVSREGDYSP--GSNVFNAILDVLGRARRFVELIQVFDEMP--------DLVNEKTYGILLNRYAAAHM 203 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~li~~~~~~g~ 203 (536)
.++++|+.-|+.+.+..|-+. .-.+.-.+|.++.+.|++++....+.++. ..-+..+.|.++.......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 489999999999887653332 24567788999999999999999888876 23456677888887776666
Q ss_pred HHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC-----C-------CCHHHHHHHHHH
Q 048749 204 VEEAIGVFDRRKEF--GELDD---LSAFQNLLLWLCRYKHVEVAETFFESEKNEF-----G-------YDIKTMNIILNG 266 (536)
Q Consensus 204 ~~~A~~~~~~m~~~--g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~-------~~~~~~~~li~~ 266 (536)
.+-..++|+.-.+. .-+.+ -.|-..|...|...+.+.....++.++...+ . .-...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 55555555432211 00011 1122345666666666666666666642111 1 123456666777
Q ss_pred HHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH-----HhcCCHhHHHH
Q 048749 267 WCVLGNVYEAKRFWKDIIKSK-CEPDSVTYATFVNAL-----TKKGKLGTALR 313 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~-----~~~g~~~~a~~ 313 (536)
|....+-..-..++++...-. .-|.+.... +|+-| .+.|++++|-.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 777777777777777665422 223333332 33333 34566666643
No 294
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.18 E-value=33 Score=32.93 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 290 PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP---DVVTCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 290 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
....+|..++..+.+.|.++.|...+..+...+... ++.+...-+...-..|+..+|+..++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567778888888888888888888777643211 233344445556677788888888877765
No 295
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.18 E-value=14 Score=34.01 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 048749 272 NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK 321 (536)
Q Consensus 272 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (536)
+.++++.++..=+.-|+-||-.+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 44566666665566666666666666666666666666666655555443
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.65 E-value=2.2 Score=24.22 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 468 SYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
.|..+-..+...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345555666666666666666666654
No 297
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.57 E-value=14 Score=36.15 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=70.0
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--C
Q 048749 107 GEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--D 184 (536)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~ 184 (536)
..+..+|+..+-.|+...+-+++...-|+++.+++....+.+. ......+...++...-+.|++++|..+-+.|. .
T Consensus 310 ~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~e 387 (831)
T PRK15180 310 QQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNE 387 (831)
T ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccc
Confidence 4455566666666666666666665556777777777666554 33455666777777777788888877777776 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048749 185 LVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFG 218 (536)
Q Consensus 185 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (536)
..++.........--+.|-++++.-.|++....+
T Consensus 388 ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 388 IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred cCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 3444444444444445566777777777766544
No 298
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.53 E-value=18 Score=29.43 Aligned_cols=62 Identities=11% Similarity=0.016 Sum_probs=34.1
Q ss_pred HHHHHHHHHHH---ccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048749 157 NVFNAILDVLG---RARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFG 218 (536)
Q Consensus 157 ~~~~~li~~~~---~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (536)
.+.+.||+... ..++++++..+++.|. .+.....-..-...+...|++++|+.+|++..+.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 34444444432 3667777777777666 22222222223334556777777777777766644
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.31 E-value=7.6 Score=33.41 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=18.5
Q ss_pred cCCHhHHHHHHHHHHHc---CCCCCHhhHHHHHHHHHhcCChHHH
Q 048749 305 KGKLGTALRLFQAMWEK---GRKPDVVTCNCIIDALCFKKRIPEA 346 (536)
Q Consensus 305 ~g~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A 346 (536)
..+.+++..++....+. +-.+|+..+.+|+..|.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444444432 1133444444444444444444444
No 300
>PRK09687 putative lyase; Provisional
Probab=85.27 E-value=31 Score=31.94 Aligned_cols=201 Identities=9% Similarity=0.005 Sum_probs=123.9
Q ss_pred CCHHHHHHHHHHHHccCCH----HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCCH
Q 048749 154 PGSNVFNAILDVLGRARRF----VELIQVFDEM-PDLVNEKTYGILLNRYAAAHM-----VEEAIGVFDRRKEFGELDDL 223 (536)
Q Consensus 154 ~~~~~~~~li~~~~~~g~~----~~A~~~~~~~-~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~~~~ 223 (536)
+|..+-...+.++++.|+. .++..++..+ ...++..+....+.++...+. ...+.+.+..... .++.
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~ 142 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKST 142 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCH
Confidence 3666666777777777763 4677777766 355666677666666665542 1233444433333 3466
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048749 224 SAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLG-NVYEAKRFWKDIIKSKCEPDSVTYATFVNAL 302 (536)
Q Consensus 224 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 302 (536)
.+-...+.++.+.++.+....+...+. .+|..+-...+.++.+.+ +...+...+..+.. .++..+-...+.++
T Consensus 143 ~VR~~a~~aLg~~~~~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aL 216 (280)
T PRK09687 143 NVRFAVAFALSVINDEAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGL 216 (280)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence 666677788888877543333333344 345566666666666653 24466666666664 45777777888888
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048749 303 TKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHL 372 (536)
Q Consensus 303 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 372 (536)
.+.|+. .|...+-...+.+ + .....+.++...|.. +|+..+..+.+. .||..+-...+.++
T Consensus 217 g~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 217 ALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 888884 4555555555542 2 345677888888885 688888888764 24666655555554
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.17 E-value=2.6 Score=25.36 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 467 RSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
.+++.|...|...|++++|..++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888887664
No 302
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.99 E-value=54 Score=34.43 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=31.8
Q ss_pred HHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcC
Q 048749 161 AILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHM-------VEEAIGVFDRRKEFG 218 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g 218 (536)
.+|--|.|+|++++|.++..+.. .......+-..+..|+...+ -++...-|+...+..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 35566678888888888884433 22333466666676665422 234445555555443
No 303
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.99 E-value=27 Score=30.90 Aligned_cols=21 Identities=0% Similarity=0.260 Sum_probs=15.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 048749 372 LCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 372 ~~~~~~~~~A~~~~~~m~~~~ 392 (536)
-+..+++.+|+++|++.....
T Consensus 164 aa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345678888888888876654
No 304
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.79 E-value=44 Score=33.25 Aligned_cols=164 Identities=13% Similarity=0.066 Sum_probs=80.4
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048749 153 SPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLL 231 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 231 (536)
..|....-++++.++.+..+.-...+-.+|. ...+...|-.++.+|..+ ..++-..+++++.+..+ .|++.-..|..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 3455566666677766666666666666665 445556666666666666 44555666666665542 22222223333
Q ss_pred HHHhcCCHHHHHHHHHHhcCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 048749 232 WLCRYKHVEVAETFFESEKNEFGY------DIKTMNIILNGWCVLGNVYEAKRFWKDIIK-SKCEPDSVTYATFVNALTK 304 (536)
Q Consensus 232 ~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~ 304 (536)
.|-+ ++.+.+..+|..+...+-| -..+|.-++..- -.+.+..+.+...+.. .|...-.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 5555555555553222111 112343333311 2334444444444432 2222233344444444555
Q ss_pred cCCHhHHHHHHHHHHHc
Q 048749 305 KGKLGTALRLFQAMWEK 321 (536)
Q Consensus 305 ~g~~~~a~~~~~~m~~~ 321 (536)
..++++|++++..+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 55555555555555544
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.43 E-value=23 Score=29.68 Aligned_cols=135 Identities=16% Similarity=0.131 Sum_probs=64.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 208 IGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK 287 (536)
Q Consensus 208 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 287 (536)
++.++.+.+.|++|+...+..+++.+.+.|++.....++.. ++-+|.......+-.+. +....+.++=-+|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~---~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY---HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh---cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 34455566677777777777777777777776665555433 21222222222221111 1222233333333221
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 288 CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 288 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
=...+..+++.+...|++-+|+++.+..... +......++.+-.+.++...-..+|+-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0013445556666667766666666554221 112223445555555555554445544443
No 306
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.92 E-value=8.2 Score=35.48 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHh
Q 048749 252 EFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK---CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVV 328 (536)
Q Consensus 252 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 328 (536)
|.+....+...++..-....+++.+...+-.+.... ..|+.. -.++++.| -.-+.++++.++..=++-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 334455555555555555677777777776665421 112211 12223322 2345667777777777778888888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 329 TCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
+++.+|+.+.+.+++.+|.++...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888877776543
No 307
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=83.29 E-value=6.6 Score=30.66 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 048749 206 EAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIIL 264 (536)
Q Consensus 206 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 264 (536)
+..+-++.+...++.|++......+.+|.+.+++..|.++|+.++.+.++....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 34455666667778888888888888888888888888888887766555555554444
No 308
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.18 E-value=13 Score=32.10 Aligned_cols=80 Identities=18% Similarity=0.115 Sum_probs=59.4
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCH
Q 048749 302 LTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNR---GCLPNVTTYNSLIKHLCKIKRM 378 (536)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~~~~ 378 (536)
..+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++..++....+. +-.+|+..+.+|...|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344555 567777878877776666666666666665 66888999988877543 3367889999999999999999
Q ss_pred HHHHH
Q 048749 379 ETVYE 383 (536)
Q Consensus 379 ~~A~~ 383 (536)
+.|.-
T Consensus 195 e~AYi 199 (203)
T PF11207_consen 195 EQAYI 199 (203)
T ss_pred hhhhh
Confidence 88863
No 309
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.99 E-value=12 Score=27.74 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048749 313 RLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 313 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
+-++.+....+.|++.+..+.+.+|.+.+++.-|.++|+..+
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333334445555555555555555555555555555443
No 310
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.80 E-value=2 Score=24.89 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 048749 256 DIKTMNIILNGWCVLGNVYEA 276 (536)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A 276 (536)
+..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 333344444444444444333
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.79 E-value=3.7 Score=24.61 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRK 215 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (536)
.+++.+...|...|++++|++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 355566666666666666666665544
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.69 E-value=4.3 Score=23.11 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 364 TYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 364 ~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
+|..+...|...|++++|++.|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4556666666666666666666666653
No 313
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.34 E-value=75 Score=34.05 Aligned_cols=223 Identities=11% Similarity=0.043 Sum_probs=126.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHhcCCHhHHHHHHHHHHHc----CCCCCHhhHHHHHHH
Q 048749 269 VLGNVYEAKRFWKDIIKSKCEPDS-------VTYATFVN-ALTKKGKLGTALRLFQAMWEK----GRKPDVVTCNCIIDA 336 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~-~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~ 336 (536)
...++++|..++.++...-..|+. ..|+.+-. .....|++++|.++.+..... -..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 478899999998887654222221 23444432 234578899999988877664 233455667778888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHH--HHHhcCC--HHHHHHHHHHHHhcCCC----CCCcHHHHHHH
Q 048749 337 LCFKKRIPEALEVLREMKNRGCLPNVTT---YNSLIK--HLCKIKR--METVYEYLDEMEQKNGS----CLPNEITFNYL 405 (536)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~--~~~~~~~--~~~A~~~~~~m~~~~~~----~~p~~~~~~~l 405 (536)
..-.|++++|..+.....+..-.-++.. |..+.. .+...|+ +.+....|......... ..+-..+...+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 8889999999999887765422223333 333322 2344563 23333334433332110 11233455566
Q ss_pred HHhcCCCChHHHHHH----HHHHCCCCCCHHHH--HHHHHHHHccCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHH
Q 048749 406 LKSLKKPEEVPWVLE----RMERNGCKMSTDTY--NVILKLYVNWDCEDKVRHTWEEMEKKGMGP----DQRSYTVMIHG 475 (536)
Q Consensus 406 l~~~~~~~~a~~~~~----~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~li~~ 475 (536)
+.++.+.+.+..-.. .-......|-...+ ..|+..+...|+.++|...++++......+ +..+-...+..
T Consensus 587 l~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~ 666 (894)
T COG2909 587 LRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKL 666 (894)
T ss_pred HHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhH
Confidence 666655544432211 11112112222222 367788888999999999999988653333 33333333433
Q ss_pred H--HhcCCHHHHHHHHHH
Q 048749 476 L--YDKGRLEDALSYFHE 491 (536)
Q Consensus 476 ~--~~~g~~~~A~~~~~~ 491 (536)
. ...|+.++|.....+
T Consensus 667 ~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 667 ILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhcccCCHHHHHHHHHh
Confidence 3 356888777776655
No 314
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=81.86 E-value=91 Score=34.66 Aligned_cols=109 Identities=13% Similarity=0.085 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCC-----CCCCHHHHHHHHHHHHc-cCCHHHHHHHHHhCC-CCCCHHHHHHHH----HHHHhc----CCH
Q 048749 140 YTFFKWVSREGD-----YSPGSNVFNAILDVLGR-ARRFVELIQVFDEMP-DLVNEKTYGILL----NRYAAA----HMV 204 (536)
Q Consensus 140 ~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~-~~~~~~~~~~li----~~~~~~----g~~ 204 (536)
.+.|++|.+.+. +..++..+-.-+.++.+ .++.+-...++-.+. ...+...|.... ..|... .+.
T Consensus 694 ~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~~~~~r~~~d~kv 773 (1265)
T KOG1920|consen 694 KEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQVYMSRDPYDNKV 773 (1265)
T ss_pred HHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhccccccccceeEEeccchhhHH
Confidence 455777766541 12234444444445554 345555555555554 122222222111 111111 123
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhc
Q 048749 205 EEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYK--HVEVAETFFESEK 250 (536)
Q Consensus 205 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~ 250 (536)
....+..+...... .|+ .-...+|.+|.+.+ .++.|+.....++
T Consensus 774 ~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 774 NSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred HHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 33333333333332 455 44456777888777 5666666665544
No 315
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=81.37 E-value=36 Score=29.75 Aligned_cols=162 Identities=14% Similarity=0.074 Sum_probs=87.0
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 048749 327 VVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLL 406 (536)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll 406 (536)
+.+||-+.--+...|+++.|.+.|+...+....-+-...|-=|..| -.|+++-|.+=|-..-+.++ ..|-...|-.+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~-~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDP-NDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 4567777777777888888888888877764333333333333222 34777777766665555443 345445555555
Q ss_pred HhcCCCChHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHh
Q 048749 407 KSLKKPEEVP-WVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPD-------QRSYTVMIHGLYD 478 (536)
Q Consensus 407 ~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~li~~~~~ 478 (536)
..--+..+|. .+.++.... |..-|...|-.|.- |++ ....+++.+... -.-+ ..||--|..-+..
T Consensus 177 E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gki-S~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 177 EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKI-SEETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhc-cHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhc
Confidence 5444444444 233333322 33333333322211 111 112233333321 1111 2456667777778
Q ss_pred cCCHHHHHHHHHHHHHCCC
Q 048749 479 KGRLEDALSYFHEMRLKGM 497 (536)
Q Consensus 479 ~g~~~~A~~~~~~m~~~g~ 497 (536)
.|+.++|..+|+-.+..++
T Consensus 250 ~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 250 LGDLDEATALFKLAVANNV 268 (297)
T ss_pred cccHHHHHHHHHHHHHHhH
Confidence 8999999999988887654
No 316
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=81.32 E-value=66 Score=32.71 Aligned_cols=369 Identities=9% Similarity=0.030 Sum_probs=192.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH-hcCCHHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYA-AAHMVEEAIGVF 211 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~-~~g~~~~A~~~~ 211 (536)
+.+.+..+++.+... ++.--.-|-.....=.+.|..+.+.++|++-. .+.+...|......+. ..|+.+...+.|
T Consensus 60 ~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 60 DVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 456677777777754 34445557777777778888889999998876 5566667766665444 457777777888
Q ss_pred HHHHHc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH---hc------CCHHHHHHHH
Q 048749 212 DRRKEF-GEL-DDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC---VL------GNVYEAKRFW 280 (536)
Q Consensus 212 ~~m~~~-g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~---~~------g~~~~A~~~~ 280 (536)
+..... |.. .+...|-..|..-..+++......+++++.+- ...-++..-.-|. .. ...+++.++-
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~ 214 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLR 214 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHh
Confidence 777653 322 23345666666667777888888888886432 1222222222222 11 2233333332
Q ss_pred HHHHHC---C-CCCCHHHHHHHHHHHHhc-CCHhHHHHHHH-------HHHHc-------------C-------C----C
Q 048749 281 KDIIKS---K-CEPDSVTYATFVNALTKK-GKLGTALRLFQ-------AMWEK-------------G-------R----K 324 (536)
Q Consensus 281 ~~m~~~---g-~~~~~~~~~~li~~~~~~-g~~~~a~~~~~-------~m~~~-------------g-------~----~ 324 (536)
...... + ..+....+..-+.--... +..+++..+.. ++... + + .
T Consensus 215 ~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~ 294 (577)
T KOG1258|consen 215 SDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQ 294 (577)
T ss_pred hhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccH
Confidence 222210 0 111222222222211111 11122221111 11100 0 1 1
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 048749 325 PDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNY 404 (536)
Q Consensus 325 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 404 (536)
++..+|..-+..-.+.|+.+.+.-+|+...-- +..-...|--.+.-....|+.+-|..++....+-..+..|....+.+
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 13345666666666777777777777766421 11123334444444444577777777666655544334566666666
Q ss_pred HHHhc-CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHH---HHHHHHHHCCCCCCHHHHHHHHH-----H
Q 048749 405 LLKSL-KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVR---HTWEEMEKKGMGPDQRSYTVMIH-----G 475 (536)
Q Consensus 405 ll~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~g~~p~~~~~~~li~-----~ 475 (536)
.+.-+ ++..+|..+++.+...- +-....-..-+....+.|+.+.+. +++....+.. -+..+...+.- .
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHH
Confidence 66655 46677777887777653 222233333445556677777777 4443333321 12222222222 2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcHHH-HHHHHHHHHhh
Q 048749 476 LYDKGRLEDALSYFHEMRLKGMVPEPRT-GILVNDMNIKL 514 (536)
Q Consensus 476 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l~~~~~~~ 514 (536)
+.-.++.+.|..++.+|.+. .|+..+ +..++..+...
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~--~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI--LPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc--CCccHHHHHHHHHHHHhC
Confidence 33457778888888888763 444443 55555555443
No 317
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=81.26 E-value=61 Score=32.29 Aligned_cols=77 Identities=12% Similarity=0.103 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHhhHHHHH
Q 048749 258 KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCE-PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP-DVVTCNCII 334 (536)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li 334 (536)
.+-..+..++-+.|+.++|.+.|++|.+.... -.......|+.++...+.+.++..++.+..+...+. -...|+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 33344555566778888888888888765322 123456677888888888888888887765432221 234455544
No 318
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=81.01 E-value=14 Score=37.11 Aligned_cols=152 Identities=20% Similarity=0.117 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048749 220 LDDLSAFQNLLLWLCRY--KHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYAT 297 (536)
Q Consensus 220 ~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 297 (536)
.|+..+..+++.-.... ..-+.+..++..|+.-..|-....|...-.+.-.|+...|...+.........-..+....
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~ 647 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN 647 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH
Confidence 35555555554433222 2234566677777766666666665554445567888888888877655432223344555
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 298 FVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLC 373 (536)
Q Consensus 298 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 373 (536)
|.....+.|...+|-.++.+..... ...+-++-.+..+|.-..+++.|++-|++..+.... +.+.-+.|...-|
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 6666677778888888887777654 445667777888888888999999999888766332 4555555554433
No 319
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.97 E-value=0.61 Score=38.15 Aligned_cols=83 Identities=8% Similarity=0.121 Sum_probs=38.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 299 VNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRM 378 (536)
Q Consensus 299 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 378 (536)
+..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++... ..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcchH
Confidence 44444455555555555555554444445555555555555555555555554111 11122344444455555
Q ss_pred HHHHHHHHHH
Q 048749 379 ETVYEYLDEM 388 (536)
Q Consensus 379 ~~A~~~~~~m 388 (536)
++|.-++.++
T Consensus 87 ~~a~~Ly~~~ 96 (143)
T PF00637_consen 87 EEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHc
Confidence 5555555443
No 320
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.88 E-value=22 Score=26.82 Aligned_cols=45 Identities=9% Similarity=0.186 Sum_probs=19.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 347 LEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 347 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
.+-++.+....+.|++.+..+.+.+|.+.+++.-|.++|+.++.+
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333333444444444444555555555555555555555444443
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.23 E-value=13 Score=32.42 Aligned_cols=74 Identities=12% Similarity=0.078 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh---cCCCCCCHHHHHHHHH
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESE---KNEFGYDIKTMNIILN 265 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~li~ 265 (536)
.+..+..+.+.+.+.+++...+.-.+.. +.|..+-..++..+|-.|++++|...++-. .....+...+|..+|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3444555666666666666666655543 444555556666666666666666555442 2233344455555554
No 322
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=80.03 E-value=67 Score=32.01 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 048749 292 SVTYATFVNALTKKGKLGTALRLFQAMWEKG-RKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLP-NVTTYNSLI 369 (536)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li 369 (536)
..+-..+..++-+.|+.++|.+.+++|.+.. ......+...|+.++...+.+.++..++.+..+...+. -...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3444556667778999999999999998752 21234467789999999999999999999876543322 245666544
Q ss_pred H
Q 048749 370 K 370 (536)
Q Consensus 370 ~ 370 (536)
-
T Consensus 339 L 339 (539)
T PF04184_consen 339 L 339 (539)
T ss_pred H
Confidence 3
No 323
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.00 E-value=0.57 Score=38.35 Aligned_cols=83 Identities=8% Similarity=0.074 Sum_probs=52.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 048749 263 ILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKR 342 (536)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 342 (536)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.+...++++. .+.+-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4566666777777777787777666555677777888888888777777766651 122333455666666666
Q ss_pred hHHHHHHHHH
Q 048749 343 IPEALEVLRE 352 (536)
Q Consensus 343 ~~~A~~~~~~ 352 (536)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6666555544
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.93 E-value=31 Score=28.12 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=22.6
Q ss_pred cCCHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 236 YKHVEVAETFFESEKNEFG--YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
.++.++++.+++.+..--| +...++-.. .+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 5555555555555421111 122222222 234556666666666666544
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.60 E-value=16 Score=31.89 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 048749 294 TYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG--CLPNVTTYNSLIKH 371 (536)
Q Consensus 294 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~ 371 (536)
|.+.-++.+.+.+.+++++...++-++. .+.|..+-..++..+|-.|++++|..-++-.-... ..+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka-kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA-KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc-CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455667778888888888888777775 33466667778888999999999887777664432 22345566666653
No 326
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.40 E-value=4.8 Score=22.77 Aligned_cols=29 Identities=7% Similarity=0.117 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 048749 432 DTYNVILKLYVNWDCEDKVRHTWEEMEKK 460 (536)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 460 (536)
..+..+...|...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45677889999999999999999998875
No 327
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.22 E-value=83 Score=32.60 Aligned_cols=184 Identities=9% Similarity=0.040 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHH--HH-HHhcCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHhcC----
Q 048749 204 VEEAIGVFDRRKEFGELDDLSAFQNLL--LW-LCRYKHVEVAETFFESEKN-----EFGYDIKTMNIILNGWCVLG---- 271 (536)
Q Consensus 204 ~~~A~~~~~~m~~~g~~~~~~~~~~ll--~~-~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g---- 271 (536)
...|.++++...+.|.. ........+ .+ +....+++.|..+|+.... ...-.......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 45677777777776521 111111222 12 3355677778777777422 00113334555666665532
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHH--hcCChHHHH
Q 048749 272 -NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTK-KGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALC--FKKRIPEAL 347 (536)
Q Consensus 272 -~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~A~ 347 (536)
+.+.|..++....+.| .|+....-..+..... ..+...|.++|...-+.|.. +...+.+++.... -..+...|.
T Consensus 307 ~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred ccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHH
Confidence 6677888888888777 3454443333322222 24567888888888887754 2222222222111 233677888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 348 EVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 348 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
.++.+.-+.| .|...--...+..+.. ++.+.+.-.+..+.+.+
T Consensus 385 ~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 385 AYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 8888888776 2232222223333444 67777776666666655
No 328
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=79.19 E-value=71 Score=31.80 Aligned_cols=95 Identities=12% Similarity=0.062 Sum_probs=67.3
Q ss_pred CCCHHH-HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHC-CCCCcHH
Q 048749 428 KMSTDT-YNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGL---YDKGRLEDALSYFHEMRLK-GMVPEPR 502 (536)
Q Consensus 428 ~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~-g~~p~~~ 502 (536)
.|+..+ -+.+++-+.+.|-..+|..++..+... .+|+...|..+|.-- ...| ...+.++++.|... | .|+.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~ 531 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSD 531 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChH
Confidence 344443 356778888899999999999999886 356778888887642 2333 77889999999876 6 5666
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHH
Q 048749 503 TGILVNDMNIKLKERGEQGKKVIK 526 (536)
Q Consensus 503 t~~~l~~~~~~~~~~~~a~~~~~~ 526 (536)
.+.-....=..+|..+.+....-+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHH
Confidence 655555555578888766666554
No 329
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.16 E-value=35 Score=28.27 Aligned_cols=52 Identities=19% Similarity=0.186 Sum_probs=27.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHhHHHHHHHHHHHc
Q 048749 268 CVLGNVYEAKRFWKDIIKSKCEPDSVTYAT-FVNALTKKGKLGTALRLFQAMWEK 321 (536)
Q Consensus 268 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~ 321 (536)
.+.++.+++..+++.+.-. .|....... -...+...|++.+|+.+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3456666666666666543 233222111 112345667777777777776554
No 330
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.13 E-value=1.6e+02 Score=35.72 Aligned_cols=316 Identities=13% Similarity=0.070 Sum_probs=164.3
Q ss_pred HHHHHHccCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048749 162 ILDVLGRARRFVELIQVFDEMP-----DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRY 236 (536)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 236 (536)
+..+--+++.+.+|...++.-. ......-|..+...|+.-+++|....+...-.. .|+. ..-+......
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~sl---~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPSL---YQQILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---CccH---HHHHHHHHhh
Confidence 3345557888888888888832 112233455555588888888888777764221 2322 2344456778
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHhHHHHHH
Q 048749 237 KHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATF-VNALTKKGKLGTALRLF 315 (536)
Q Consensus 237 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~a~~~~ 315 (536)
|++..|...|+.+...-++....++.++......|.++.+.-..+...... .+....|+++ +.+--+.+++|......
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 899999999998765545557777777777777788877776555544322 2333333333 34446677777776665
Q ss_pred HHHHHcCCCCCHhhHHHH--HHHHHhc--CChHHHHHHHHHHHHC--------CCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 048749 316 QAMWEKGRKPDVVTCNCI--IDALCFK--KRIPEALEVLREMKNR--------GCL-PNVTTYNSLIKHLCKIKRMETVY 382 (536)
Q Consensus 316 ~~m~~~g~~p~~~~~~~l--i~~~~~~--g~~~~A~~~~~~m~~~--------g~~-p~~~~~~~li~~~~~~~~~~~A~ 382 (536)
. .. +..+|... .....+. .+.-.-.+..+.+.+. +.. .-...|..++....-..-....
T Consensus 1542 ~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~- 1613 (2382)
T KOG0890|consen 1542 S---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI- 1613 (2382)
T ss_pred h---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH-
Confidence 4 11 22223222 2222221 2211111222222221 111 1123444444443322111111
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHhc---CCCChHH-HHHHHHHHC----CC-CCCHHHHHHHHHHHHccCChhHHHHH
Q 048749 383 EYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVP-WVLERMERN----GC-KMSTDTYNVILKLYVNWDCEDKVRHT 453 (536)
Q Consensus 383 ~~~~~m~~~~~~~~p~~~~~~~ll~~~---~~~~~a~-~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~ 453 (536)
+.+....... ...-+..-|..-+..- .+..+-. ..-+.+... +. .--..+|....+...+.|.++.|...
T Consensus 1614 ~~l~~~s~~~-~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1614 EELKKVSYDE-DSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHhhccCccc-cccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1111110000 0111111222222221 1111111 111122221 11 12357788888888889999999888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 454 WEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKG 496 (536)
Q Consensus 454 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 496 (536)
+-...+.+ -+..+-.-..-....|+...|+.++++-++..
T Consensus 1693 ll~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1693 LLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 76666654 23344455566788999999999999988663
No 331
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.93 E-value=27 Score=35.38 Aligned_cols=133 Identities=10% Similarity=0.025 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRY 236 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 236 (536)
..-+.++..+.+.|-.++|+++-- |..- -.....+.|+++.|.++..+. .+..-|..|.++..+.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s~------D~d~---rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELST------DPDQ---RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSA 679 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcCC------Chhh---hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhc
Confidence 356677888888888888876532 2111 123345678888888776542 3556688889999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 048749 237 KHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQ 316 (536)
Q Consensus 237 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 316 (536)
+++..|.+.|..... |..|+-.+...|+-+....+-....+.| +-| .-.-+|...|+++++.+++.
T Consensus 680 ~~l~lA~EC~~~a~d--------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 680 GELPLASECFLRARD--------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNN-----LAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred ccchhHHHHHHhhcc--------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHHH
Confidence 999999998877542 5567777777888776666666666665 223 33345667899998888775
Q ss_pred HH
Q 048749 317 AM 318 (536)
Q Consensus 317 ~m 318 (536)
.-
T Consensus 746 ~t 747 (794)
T KOG0276|consen 746 ST 747 (794)
T ss_pred hc
Confidence 54
No 332
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.31 E-value=38 Score=27.60 Aligned_cols=85 Identities=14% Similarity=0.225 Sum_probs=58.6
Q ss_pred CCCCHH--HHHHHHHHHHccCCHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCC
Q 048749 152 YSPGSN--VFNAILDVLGRARRFVELIQVFDEMP--------DLVNEKTYGILLNRYAAAHM-VEEAIGVFDRRKEFGEL 220 (536)
Q Consensus 152 ~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~ 220 (536)
..++.. ..|.++.-....+.+.-.+.+++.+. ...+..+|++++.+.++..- --.+..+|+-|++.+.+
T Consensus 33 ~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~ 112 (145)
T PF13762_consen 33 ASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIE 112 (145)
T ss_pred cChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCC
Confidence 444433 35667766677777777777776665 23556678888888866665 45567778888877778
Q ss_pred CCHHHHHHHHHHHHhc
Q 048749 221 DDLSAFQNLLLWLCRY 236 (536)
Q Consensus 221 ~~~~~~~~ll~~~~~~ 236 (536)
.+..-|..++.++.+.
T Consensus 113 ~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 113 FTPSDYSCLIKAALRG 128 (145)
T ss_pred CCHHHHHHHHHHHHcC
Confidence 8888888888876554
No 333
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=77.08 E-value=64 Score=30.17 Aligned_cols=145 Identities=12% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCCCcHHHHHHHHHhc-CCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-
Q 048749 384 YLDEMEQKNGSCLPNEITFNYLLKSL-KKPEEVPWVLERMER-NGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK- 460 (536)
Q Consensus 384 ~~~~m~~~~~~~~p~~~~~~~ll~~~-~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 460 (536)
+|+-+.+... ...|...++.+..+- .+.++..+..+...+ .|-.--...+.....-||+.||.+.|.+.+++-.+.
T Consensus 56 ~Ye~lce~~~-i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~kt 134 (393)
T KOG0687|consen 56 LYEYLCESLV-IKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKT 134 (393)
T ss_pred HHHHHHhhcc-eeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q ss_pred ---CCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCcHHH--HHHHHHHHHhhhhhhhhhHHHHHhhh
Q 048749 461 ---GMGPDQRSYTVMIH-GLYDKGRLEDALSYFHEMRLKGMVPEPRT--GILVNDMNIKLKERGEQGKKVIKLTS 529 (536)
Q Consensus 461 ---g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~l~~~~~~~~~~~~a~~~~~~~~~ 529 (536)
|.+.|...+.+=+. -|..+.-+.+-++..+.+.++|-.-+... -.--.-.|....++.+|..++.+-.+
T Consensus 135 vs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 135 VSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcc
No 334
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.71 E-value=8.9 Score=27.23 Aligned_cols=51 Identities=20% Similarity=0.366 Sum_probs=36.1
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 438 LKLYVNWDCEDKVRHTWEEMEKKGMGPD--QRSYTVMIHGLYDKGRLEDALSYF 489 (536)
Q Consensus 438 i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 489 (536)
+..| ..++.++|+..|+...+.-..|. -.++..|+.+|+..|++++++++.
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 66778888888888877633322 246777888888889888887764
No 335
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.36 E-value=1.1e+02 Score=32.39 Aligned_cols=100 Identities=7% Similarity=0.076 Sum_probs=59.0
Q ss_pred HHHHHccCCHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048749 163 LDVLGRARRFVELIQVFDEMP-DLV---NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKH 238 (536)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 238 (536)
|+-+.+.+.+++|+++-+... ..+ ....+...|..+.-.|++++|-...-+|.. .+..-|.--+.-+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 445567778888888887776 222 345677788888888888888777776663 334444444444444444
Q ss_pred HHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHh
Q 048749 239 VEVAETFFESEKNEFG-YDIKTMNIILNGWCV 269 (536)
Q Consensus 239 ~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~ 269 (536)
......+ +..+-+ .+..+|..++..+..
T Consensus 439 l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 4332222 222211 345567777766655
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.66 E-value=9.3 Score=21.58 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 468 SYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
+|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666677777777777777777664
No 337
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.27 E-value=94 Score=31.13 Aligned_cols=37 Identities=8% Similarity=-0.003 Sum_probs=24.9
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 048749 425 NGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKG 461 (536)
Q Consensus 425 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 461 (536)
.|...-...+.-+-.-|....++++|++++..+.+.+
T Consensus 199 lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 199 LGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred hccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc
Confidence 3434444555566677777888888888888777653
No 338
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.22 E-value=51 Score=28.47 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=59.2
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCC-----HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048749 301 ALTKKGKLGTALRLFQAMWEKGRKPD-----VVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKI 375 (536)
Q Consensus 301 ~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 375 (536)
-+.+.|++++|..-|.+.+.. +++. ...|..-..++.+.+.++.|+.--.+.++.+.. .....---..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 356778888888888887775 2222 234555556777888888888877777765422 111112223467777
Q ss_pred CCHHHHHHHHHHHHhcC
Q 048749 376 KRMETVYEYLDEMEQKN 392 (536)
Q Consensus 376 ~~~~~A~~~~~~m~~~~ 392 (536)
..+++|++=|+++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 88888888888888765
No 339
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.16 E-value=5.4 Score=21.26 Aligned_cols=20 Identities=15% Similarity=-0.009 Sum_probs=9.7
Q ss_pred HHHHHHHccCCHHHHHHHHH
Q 048749 161 AILDVLGRARRFVELIQVFD 180 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~ 180 (536)
.+..++...|++++|+.+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34444555555555554443
No 340
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.01 E-value=91 Score=30.85 Aligned_cols=121 Identities=13% Similarity=0.136 Sum_probs=81.7
Q ss_pred HhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHH
Q 048749 268 CVLGNVYEAK-RFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEA 346 (536)
Q Consensus 268 ~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 346 (536)
...|++-.|- +++..+....-.|+.+...+. .....|+++.+.+.+...... +.....+...++....+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3467776654 455555554445555544443 356789999998888776554 344566788888999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 347 LEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 347 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
..+-..|....+. +......-...--..|-+|+++..+++....+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9998888766555 44443333333445678899999998887654
No 341
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.61 E-value=10 Score=21.38 Aligned_cols=27 Identities=30% Similarity=0.301 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKE 216 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (536)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566666777777777777777776654
No 342
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.52 E-value=21 Score=32.67 Aligned_cols=51 Identities=22% Similarity=0.130 Sum_probs=26.0
Q ss_pred HHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 164 DVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRR 214 (536)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 214 (536)
..|..+|.+.+|.++.++.. ++.+...|-.+++.++..|+--.|.+-++++
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34444555555555555544 4445555555555555555544444444444
No 343
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.94 E-value=47 Score=30.32 Aligned_cols=89 Identities=8% Similarity=0.039 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh--
Q 048749 262 IILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCF-- 339 (536)
Q Consensus 262 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-- 339 (536)
.=|.+++..|++.+++...-+-...--+........-|-.|.+.+++..+.++-..-.+..-.-+...|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 335566666666666655444433211112223333344456666666666665555543222223335555554443
Q ss_pred ---cCChHHHHHHH
Q 048749 340 ---KKRIPEALEVL 350 (536)
Q Consensus 340 ---~g~~~~A~~~~ 350 (536)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 46666666555
No 344
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.60 E-value=74 Score=29.16 Aligned_cols=198 Identities=15% Similarity=0.161 Sum_probs=99.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH----hcC-CCCCCHHHHHH
Q 048749 195 LNRYAAAHMVEEAIGVFDRRKEFGELDDLS-------AFQNLLLWLCRYKHVEVAETFFES----EKN-EFGYDIKTMNI 262 (536)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~----~~~-~~~~~~~~~~~ 262 (536)
.+-..+.+++++|+..|.++...|+..|.. +...+...|.+.|+...-.+.... |.. .-+.......+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 344556677777777777777777665543 334556667777765544333322 111 01223334445
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHH----HcCCCCCHhhHHH
Q 048749 263 ILNGWCV-LGNVYEAKRFWKDIIKSKCEPD-----SVTYATFVNALTKKGKLGTALRLFQAMW----EKGRKPDVVTCNC 332 (536)
Q Consensus 263 li~~~~~-~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~p~~~~~~~ 332 (536)
|++.+-. ...++.-+.+....++-..+-. ...-..++..+.+.|.+.+|+.+...+. +..-+|+..+...
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 5554433 3334444444444433211111 1122457888899999999988766544 3344444333222
Q ss_pred H-HHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcC
Q 048749 333 I-IDALCFKKRIPEALEVLREMKNR----GCLPNVTTYNSLIKHL--CKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 333 l-i~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~~--~~~~~~~~A~~~~~~m~~~~ 392 (536)
+ -..|....++.++..-+...... =++|-...---|+.+. |.-.++.-|..+|-+..+..
T Consensus 170 lESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 170 LESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 2 23455555555555555444321 1333333333334433 23345666777776666544
No 345
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=73.42 E-value=59 Score=30.75 Aligned_cols=130 Identities=15% Similarity=0.064 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 136 WEAAYTFFKWVSREGDY---SPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFD 212 (536)
Q Consensus 136 ~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 212 (536)
...|.+.|+.....+.- ..++.....++....+.|..+....+++......+......++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 45667777766654222 446666677777778888876666666666655677788888888888888888888888
Q ss_pred HHHHcC-CCCCHHHHHHHHHHHHhcCC--HHHHHHHHHH----hcCCCCCCHHHHHHHHHHH
Q 048749 213 RRKEFG-ELDDLSAFQNLLLWLCRYKH--VEVAETFFES----EKNEFGYDIKTMNIILNGW 267 (536)
Q Consensus 213 ~m~~~g-~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~----~~~~~~~~~~~~~~li~~~ 267 (536)
.....+ +++.. . ..++.++...+. .+.+...+.. +...++.+......++..+
T Consensus 226 ~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~ 285 (324)
T PF11838_consen 226 LLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSF 285 (324)
T ss_dssp HHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCC
T ss_pred HHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 887754 44333 2 234444443333 3566655544 3444443333444555543
No 346
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=72.89 E-value=8 Score=21.54 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=15.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 368 LIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 368 li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
+..++.+.|++++|.+.|+++.+..
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4455666667777777776666644
No 347
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.08 E-value=8.1 Score=23.98 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=11.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHH
Q 048749 437 ILKLYVNWDCEDKVRHTWEEMEK 459 (536)
Q Consensus 437 li~~~~~~g~~~~A~~~~~~m~~ 459 (536)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555443
No 348
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.03 E-value=1e+02 Score=31.01 Aligned_cols=91 Identities=3% Similarity=-0.075 Sum_probs=50.9
Q ss_pred HhhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHH
Q 048749 113 LNQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYG 192 (536)
Q Consensus 113 l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 192 (536)
+...|+.++...+..+.....|++..|+.+++.+.... ....++..+..++ ...+...+.
T Consensus 193 ~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~---~~~it~~~V~~~l-----------------g~~~~~~~~ 252 (484)
T PRK14956 193 CKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFT---DSKLTGVKIRKMI-----------------GYHGIEFLT 252 (484)
T ss_pred HHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhC---CCCcCHHHHHHHh-----------------CCCCHHHHH
Confidence 34446666666666666666667777777776654321 1112222222222 123445556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048749 193 ILLNRYAAAHMVEEAIGVFDRRKEFGELDDL 223 (536)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 223 (536)
.++......+....|+.++++|.+.|..|..
T Consensus 253 ~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 253 SFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 6666655555567788888888887765553
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.89 E-value=12 Score=23.28 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 472 MIHGLYDKGRLEDALSYFHEMRLKG 496 (536)
Q Consensus 472 li~~~~~~g~~~~A~~~~~~m~~~g 496 (536)
|..+|...|+.+.|.+++++.+..|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 6688999999999999999999654
No 350
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=71.42 E-value=85 Score=28.94 Aligned_cols=61 Identities=5% Similarity=0.003 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 048749 289 EPDSVTYATFVNALTKKGKLGTALRLFQAMWEK-GRKPDVVTCNCIIDALCFKKRIPEALEV 349 (536)
Q Consensus 289 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~ 349 (536)
.++..+...++..++..+++..-.++++..... +...|...|..+|......|+..-...+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 344444444455555555555544444444333 3333444455555555555554433333
No 351
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.44 E-value=21 Score=23.23 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=22.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 048749 472 MIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDM 510 (536)
Q Consensus 472 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~ 510 (536)
+.-++.+.|++++|.++.+.+++ +.|+......|...
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 44567777777777777777776 56666554444443
No 352
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.43 E-value=69 Score=29.29 Aligned_cols=86 Identities=8% Similarity=0.013 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048749 228 NLLLWLCRYKHVEVAETFFES---EKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTK 304 (536)
Q Consensus 228 ~ll~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 304 (536)
.=|.+++..|++.++....-+ ..++++|.+. ..-|-.|.+.|+...+.++-..-....-.-+...|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 347888899999988877655 2455555543 44455577888888888877766654222334457777766654
Q ss_pred -----cCCHhHHHHHH
Q 048749 305 -----KGKLGTALRLF 315 (536)
Q Consensus 305 -----~g~~~~a~~~~ 315 (536)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 58899988876
No 353
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=69.27 E-value=48 Score=25.26 Aligned_cols=86 Identities=17% Similarity=0.151 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHMVEEAIGVFD 212 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 212 (536)
...++|..+.+|+...++ ....+--..+..+.+.|++++| +..... ..||...|-+|-. .+.|.-+++...+.
T Consensus 20 HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 467899999999988762 2334444455667889999999 333333 5688888877654 47788888888888
Q ss_pred HHHHcCCCCCHHHH
Q 048749 213 RRKEFGELDDLSAF 226 (536)
Q Consensus 213 ~m~~~g~~~~~~~~ 226 (536)
++-..| .|....|
T Consensus 94 rla~~g-~~~~q~F 106 (116)
T PF09477_consen 94 RLASSG-SPELQAF 106 (116)
T ss_dssp HHCT-S-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 877766 3444343
No 354
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.51 E-value=64 Score=26.33 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=62.1
Q ss_pred HHHHCCCCCCH--HHHHHHHHHHHccCChhHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHH
Q 048749 421 RMERNGCKMST--DTYNVILKLYVNWDCEDKVRHTWEEMEKKGM-----GPDQRSYTVMIHGLYDKGR-LEDALSYFHEM 492 (536)
Q Consensus 421 ~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m 492 (536)
.|.+.+..++. ...|+++.....-++......+++.+..... .-+..+|.+++.+..+..- ---+..+|+-|
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 34444444443 3456777777777777777777776643210 2355678888888866554 33467778888
Q ss_pred HHCCCCCcHHHHHHHHHHHHhhh
Q 048749 493 RLKGMVPEPRTGILVNDMNIKLK 515 (536)
Q Consensus 493 ~~~g~~p~~~t~~~l~~~~~~~~ 515 (536)
.+.+.++++.-|..++..+.+..
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcCC
Confidence 88788888888888888877763
No 355
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.45 E-value=1.3e+02 Score=29.76 Aligned_cols=76 Identities=12% Similarity=0.081 Sum_probs=38.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHH--HHHHHHHHHHhcCCH
Q 048749 198 YAAAHMVEEAIGVFDRRKEFGELDDLSA--FQNLLLWLCRYKHVEVAETFFESEKNEFGYDIK--TMNIILNGWCVLGNV 273 (536)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~ 273 (536)
.++.|+.+.+ +.+.+.|..|+... ..+.+..++..|+.+.+.-+++. +..|+.. .....+...++.|+.
T Consensus 9 A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 9 AILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKH---GAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC---CCCccccCCCcccHHHHHHHCCCH
Confidence 3445665444 34445676665432 23445556677777766555543 2122211 112334455567777
Q ss_pred HHHHHHH
Q 048749 274 YEAKRFW 280 (536)
Q Consensus 274 ~~A~~~~ 280 (536)
+.+..++
T Consensus 82 ~~v~~Ll 88 (413)
T PHA02875 82 KAVEELL 88 (413)
T ss_pred HHHHHHH
Confidence 6655544
No 356
>PHA02875 ankyrin repeat protein; Provisional
Probab=67.94 E-value=67 Score=31.74 Aligned_cols=21 Identities=5% Similarity=0.040 Sum_probs=11.4
Q ss_pred HHHHHHHccCCHHHHHHHHHh
Q 048749 161 AILDVLGRARRFVELIQVFDE 181 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~ 181 (536)
+.+...++.|+.+-+.-+++.
T Consensus 37 tpL~~A~~~~~~~~v~~Ll~~ 57 (413)
T PHA02875 37 SPIKLAMKFRDSEAIKLLMKH 57 (413)
T ss_pred CHHHHHHHcCCHHHHHHHHhC
Confidence 344455566666655555543
No 357
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=67.55 E-value=29 Score=32.49 Aligned_cols=48 Identities=10% Similarity=-0.048 Sum_probs=25.0
Q ss_pred HHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 165 VLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFD 212 (536)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 212 (536)
-|.+.|.+++|++.|.... .+.+.+++..-..+|.+...+..|..=-.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 4555566666666555543 33355555555555555555554444333
No 358
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=67.15 E-value=1.2e+02 Score=28.88 Aligned_cols=115 Identities=6% Similarity=0.024 Sum_probs=58.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHhHHHHHHHHHH
Q 048749 243 ETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTK---KGKLGTALRLFQAMW 319 (536)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~ 319 (536)
..++++..+..+.+...+..+|..+.+..+.++..+-|+++.... +-+...|...|..... .-.++.+..+|.+..
T Consensus 51 lsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 51 LSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 344444322234566666666666666666666666666666543 2245556555554433 223444544444433
Q ss_pred Hc------CC----CCC-------HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048749 320 EK------GR----KPD-------VVTCNCIIDALCFKKRIPEALEVLREMKNRGC 358 (536)
Q Consensus 320 ~~------g~----~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 358 (536)
+. +. .+- ..++..+......+|..+.|+.+++.+.+.++
T Consensus 130 ~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 130 RALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 32 11 000 11233333344567777777777777766543
No 359
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=67.03 E-value=1.2e+02 Score=28.74 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=44.0
Q ss_pred HHHHHccCChhHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCcHHH--HH
Q 048749 438 LKLYVNWDCEDKVRHTWEEMEKK---GMGPDQRSYT--VMIHGLYDKGRLEDALSYFHEMRL-----KGMVPEPRT--GI 505 (536)
Q Consensus 438 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t--~~ 505 (536)
+...-+.++.++|.++++++.+. --.|+.+.|. .+...+...||.+++.+.+++..+ -|+.|+..+ |.
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ 161 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYS 161 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHH
Confidence 33334455666777777666542 1234555443 334455566777777776666555 356555444 34
Q ss_pred HHHHHHHhhhhhhhh
Q 048749 506 LVNDMNIKLKERGEQ 520 (536)
Q Consensus 506 ~l~~~~~~~~~~~~a 520 (536)
+-..++.+.|++...
T Consensus 162 lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 162 LSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHHhHHHH
Confidence 444444445555433
No 360
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=66.82 E-value=14 Score=24.96 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 447 EDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 447 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
++...++++.+... .-|..---.+|.+|...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455555555432 12444455678888888888888888887764
No 361
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=66.06 E-value=44 Score=31.34 Aligned_cols=50 Identities=18% Similarity=0.065 Sum_probs=24.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 048749 265 NGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLF 315 (536)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 315 (536)
+-|.+.|.+++|+..|..-+... +-|.+++..-..+|.+...+..|..=.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhH
Confidence 34555555555555555444332 125555555555555555555444433
No 362
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.94 E-value=88 Score=26.99 Aligned_cols=89 Identities=11% Similarity=0.096 Sum_probs=59.8
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Q 048749 437 ILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVM-----IHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMN 511 (536)
Q Consensus 437 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~ 511 (536)
+...+..+|++++|..-++..... |....+..+ .+.....|.+|+|+..++...+.+. ......+-.+++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence 345677788888888888776653 233333333 3456677888888888887766543 233466777788
Q ss_pred HhhhhhhhhhHHHHHhhhc
Q 048749 512 IKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 512 ~~~~~~~~a~~~~~~~~~~ 530 (536)
...|+.++|...+.+-...
T Consensus 170 l~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 170 LAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHcCchHHHHHHHHHHHHc
Confidence 8888888888887775443
No 363
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=65.64 E-value=26 Score=22.20 Aligned_cols=32 Identities=9% Similarity=0.177 Sum_probs=17.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHH
Q 048749 477 YDKGRLEDALSYFHEMRLKGMVPEPRTGILVN 508 (536)
Q Consensus 477 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~ 508 (536)
.+.|-..++..++++|.+.|+..++..+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455556666666666666655555544443
No 364
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=65.36 E-value=58 Score=25.04 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 469 YTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
|..|+.-|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 77777777777888888888777766
No 365
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=65.09 E-value=1.2e+02 Score=28.20 Aligned_cols=171 Identities=12% Similarity=0.149 Sum_probs=81.4
Q ss_pred CCHHHHHHHH-HHHHccC-CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048749 154 PGSNVFNAIL-DVLGRAR-RFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLL 231 (536)
Q Consensus 154 ~~~~~~~~li-~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 231 (536)
+...+++.|. +-+.+.| -..-|.++|....... ..+.++..+.+.+.-+.-+++| +|+..+-.....
T Consensus 163 ~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek---~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak 231 (412)
T KOG2297|consen 163 LPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEK---DINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAK 231 (412)
T ss_pred CCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhc---cHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHH
Confidence 3444455444 3344444 2344666776664222 4566666665555555555444 666655555554
Q ss_pred HHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 048749 232 WLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFW-KDIIKSKCEPDS----VTYATFVNALTKKG 306 (536)
Q Consensus 232 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~~~~----~~~~~li~~~~~~g 306 (536)
.+...|--+..+-.-.++..+ .-...-..|.+-..+...+++..... ++|.+.+ -|+. ..|..++++---+.
T Consensus 232 ~Ft~agL~elvey~~~q~~~~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnK 308 (412)
T KOG2297|consen 232 YFTDAGLKELVEYHRNQQSEG--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNK 308 (412)
T ss_pred HHhHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhch
Confidence 444444332221111111000 00111222333333445555555544 4455555 3554 35666666543322
Q ss_pred CHh-HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHH
Q 048749 307 KLG-TALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEAL 347 (536)
Q Consensus 307 ~~~-~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 347 (536)
+-+ -|.+.++ ...+|.-|+.++|..|+.+-.+
T Consensus 309 keelva~qalr---------hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 309 KEELVAEQALR---------HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHHHHHHHHH---------HHHhhhHHHHHHhcCChHHHHH
Confidence 211 1222222 2456888999999999877654
No 366
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.08 E-value=17 Score=31.46 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=40.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP 183 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 183 (536)
..+.+......+|+.+.-...|++.+|..++.++...|+.++|.+...++.
T Consensus 121 ~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 121 PPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356666777777776655567888888888888888888888888888876
No 367
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.05 E-value=60 Score=24.45 Aligned_cols=87 Identities=15% Similarity=0.126 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRR 214 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 214 (536)
..++|..+-+|+...+ .....+--.-+..+...|++++|..+.+.+. .||...|-+|-.. +.|..+++..-+.+|
T Consensus 20 cHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-~pdlepw~ALce~--rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 20 CHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC-YPDLEPWLALCEW--RLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCC-CchHHHHHHHHHH--hhccHHHHHHHHHHH
Confidence 6788999999998764 1133334444567788999999999999886 6888888877653 667777777777788
Q ss_pred HHcCCCCCHHHHH
Q 048749 215 KEFGELDDLSAFQ 227 (536)
Q Consensus 215 ~~~g~~~~~~~~~ 227 (536)
-..| .|....|.
T Consensus 95 a~sg-~p~lq~Fa 106 (115)
T TIGR02508 95 AASG-DPRLQTFV 106 (115)
T ss_pred HhCC-CHHHHHHH
Confidence 8777 55555543
No 368
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.02 E-value=43 Score=26.35 Aligned_cols=39 Identities=8% Similarity=-0.039 Sum_probs=20.6
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 048749 421 RMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEK 459 (536)
Q Consensus 421 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 459 (536)
......+.|++......+++|-+.+|+..|..+|+-++.
T Consensus 74 ~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 74 NLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred hhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333444555555555555555555555555555555543
No 369
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=63.02 E-value=66 Score=24.56 Aligned_cols=87 Identities=16% Similarity=0.066 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 202 HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWK 281 (536)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 281 (536)
...++|..+.+.+...+. -...+--+-+..+.+.|+++.| +..-.....||...|.+|-. .+.|-.+++...+.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 346777777777776553 2222222334456677777777 22223333567777766544 36677777777777
Q ss_pred HHHHCCCCCCHHHH
Q 048749 282 DIIKSKCEPDSVTY 295 (536)
Q Consensus 282 ~m~~~g~~~~~~~~ 295 (536)
.+...| .|....|
T Consensus 94 rla~~g-~~~~q~F 106 (116)
T PF09477_consen 94 RLASSG-SPELQAF 106 (116)
T ss_dssp HHCT-S-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 666555 3433333
No 370
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.77 E-value=1e+02 Score=26.62 Aligned_cols=134 Identities=9% Similarity=0.060 Sum_probs=73.0
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 048749 327 VVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNS--LIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNY 404 (536)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 404 (536)
...|..++.... .+.. +.....+.+......-....+.+ +...+..++++++|...++...... ....+..
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~ 126 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKA 126 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHH
Confidence 344555555544 2333 44445555555421112222222 3356777888888888888765432 1111111
Q ss_pred HHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048749 405 LLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLED 484 (536)
Q Consensus 405 ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 484 (536)
..--.|.+.....|.+|+|..+++...+.++. ......--+.+...|+-++
T Consensus 127 ---------------------------l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 127 ---------------------------LAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQE 177 (207)
T ss_pred ---------------------------HHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHH
Confidence 11123455566778888888887766654321 1112222356778888888
Q ss_pred HHHHHHHHHHCC
Q 048749 485 ALSYFHEMRLKG 496 (536)
Q Consensus 485 A~~~~~~m~~~g 496 (536)
|..-|++.+..+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 888888877765
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=62.54 E-value=30 Score=24.69 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=29.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 339 FKKRIPEALEVLREMKNRGCLPN--VTTYNSLIKHLCKIKRMETVYEYL 385 (536)
Q Consensus 339 ~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~A~~~~ 385 (536)
...+.++|+..|....+.-..+. -.++..++.+|+.-|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777665433322 345666777777777777766543
No 372
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.53 E-value=65 Score=24.29 Aligned_cols=59 Identities=14% Similarity=-0.012 Sum_probs=32.4
Q ss_pred HHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048749 231 LWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTY 295 (536)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 295 (536)
..+.+.|+++.|..+.+.. ..||...|-+|-.. +.|..+.+..-+..|...| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~---~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL---CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCC---CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3455666666666655443 25666666555443 4555555555555565555 4444444
No 373
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.13 E-value=45 Score=28.78 Aligned_cols=52 Identities=19% Similarity=0.095 Sum_probs=35.8
Q ss_pred ccCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 443 NWDCEDKVRHTWEEMEK-KGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 443 ~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
..++.+......+.+.+ ....|+..+|..++.++...|+.++|.++.+++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444433333332 13378999999999999999999999888888876
No 374
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=62.06 E-value=2e+02 Score=29.90 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh
Q 048749 478 DKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIK 513 (536)
Q Consensus 478 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~ 513 (536)
+.|++.+|.+.+-.++..++.|...-..++.++.--
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~lpl 542 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDALPL 542 (566)
T ss_dssp ------------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Confidence 447777777777777776777776666666665443
No 375
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.45 E-value=33 Score=21.71 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=27.1
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048749 439 KLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIH 474 (536)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 474 (536)
....+.|-++++..++++|.+.|+.-+...|..++.
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 334456778888888888888888888877776654
No 376
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.21 E-value=1.5e+02 Score=30.39 Aligned_cols=36 Identities=19% Similarity=0.090 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048749 186 VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD 222 (536)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 222 (536)
.+......++.++. .|+.+.+++++++|...|..|.
T Consensus 244 ~~~~~i~~ll~al~-~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 244 IEPLLLFDILEALA-AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred CCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 33444444555443 4778888888888888886654
No 377
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.20 E-value=54 Score=27.79 Aligned_cols=13 Identities=23% Similarity=0.324 Sum_probs=5.0
Q ss_pred CCCHHHHHHHHHH
Q 048749 359 LPNVTTYNSLIKH 371 (536)
Q Consensus 359 ~p~~~~~~~li~~ 371 (536)
.|+..+|+.-+..
T Consensus 110 ~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 110 DPNNELYRKSLEM 122 (186)
T ss_dssp -TT-HHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 3444444444443
No 378
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.11 E-value=1.6e+02 Score=28.22 Aligned_cols=215 Identities=15% Similarity=0.111 Sum_probs=102.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHH-H----C-CCCCCHHH
Q 048749 295 YATFVNALTKKGKLGTALRLFQAMWEKGRKPDV----VTCNCIIDALCFKKRIPEALEVLREMK-N----R-GCLPNVTT 364 (536)
Q Consensus 295 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~-~----~-g~~p~~~~ 364 (536)
.+.+-.++.+.+......++..+.... ..|.. .....++..+.+.+++.-++..++.-. + . ...|....
T Consensus 105 c~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL 183 (422)
T KOG2582|consen 105 CHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFL 183 (422)
T ss_pred HHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHH
Confidence 445555666666665555554444443 12221 223345556667777666655554321 1 1 12222111
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc-----------CCCChHHHHHHHHHHCCCCCCH
Q 048749 365 YNSLIK--HLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL-----------KKPEEVPWVLERMERNGCKMST 431 (536)
Q Consensus 365 ~~~li~--~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~-----------~~~~~a~~~~~~~~~~~~~~~~ 431 (536)
....-. .|...+++|.|+.+|..... .|....-...+.+| |+.-+..+.-....-.-.+|-.
T Consensus 184 ~Y~yYgg~iciglk~fe~Al~~~e~~v~-----~Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms 258 (422)
T KOG2582|consen 184 LYLYYGGMICIGLKRFERALYLLEICVT-----TPAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMS 258 (422)
T ss_pred HHHHhcceeeeccccHHHHHHHHHHHHh-----cchhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCC
Confidence 111111 13456789999999988864 34444434444444 2211110000011111123333
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Q 048749 432 DTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMN 511 (536)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~ 511 (536)
..|.-++++|.+...- +.+.+..+-. ..+.+.|+..-|......|-++++.-=..|+..|.-..
T Consensus 259 ~pY~ef~~~Y~~~~~~-eLr~lVk~~~---------------~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~d 322 (422)
T KOG2582|consen 259 NPYHEFLNVYLKDSST-ELRTLVKKHS---------------ERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSD 322 (422)
T ss_pred chHHHHHHHHhcCCcH-HHHHHHHHHH---------------HHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4566667776653322 1222222111 12446667777777777776665544444544443222
Q ss_pred H----hhhhhhhhhHHHHHhhhcc
Q 048749 512 I----KLKERGEQGKKVIKLTSLG 531 (536)
Q Consensus 512 ~----~~~~~~~a~~~~~~~~~~g 531 (536)
+ ..+..+++++.+..|.+.|
T Consensus 323 IA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 323 IASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHHHHHhcchHHHHHHHHHHhccC
Confidence 2 4566677888887776544
No 379
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.89 E-value=2.5e+02 Score=30.47 Aligned_cols=94 Identities=13% Similarity=0.013 Sum_probs=65.5
Q ss_pred HccCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHH---------------hcCCHHHHHHHHHHHHHCCCCCc
Q 048749 442 VNWDCEDKVRHTWEEMEKK------GMGPDQRSYTVMIHGLY---------------DKGRLEDALSYFHEMRLKGMVPE 500 (536)
Q Consensus 442 ~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~---------------~~g~~~~A~~~~~~m~~~g~~p~ 500 (536)
...|++.+|.+.|+.+.-. .-+-+..-...+|..|. ..+..+.+.++...+....+.|-
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 3579999999999987632 11123333344444331 23556677777777777788887
Q ss_pred HHH--HHHHHHHHHhhhhhhhhhHHHHHhhhccCCCC
Q 048749 501 PRT--GILVNDMNIKLKERGEQGKKVIKLTSLGLKGN 535 (536)
Q Consensus 501 ~~t--~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 535 (536)
..+ ....+..+.+.++...|..+..++++.+-+|.
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~ 1118 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPP 1118 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCh
Confidence 766 66778889999999999999999988887765
No 380
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.50 E-value=2.4e+02 Score=30.09 Aligned_cols=95 Identities=12% Similarity=0.019 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSP---GSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
+.+++|++.-..... ..+ -..++...|+-|.-.|++++|-.+.-.|.. .+..-|.--+..+...++......+
T Consensus 370 k~yeeAl~~~k~~~~---~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-n~~~eWe~~V~~f~e~~~l~~Ia~~ 445 (846)
T KOG2066|consen 370 KKYEEALDAAKASIG---NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-NNAAEWELWVFKFAELDQLTDIAPY 445 (846)
T ss_pred hHHHHHHHHHHhccC---CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-chHHHHHHHHHHhccccccchhhcc
Confidence 367777776665543 333 456788889999999999999888887762 5556677777777766665443322
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCR 235 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~ 235 (536)
+....-..+...|..++-.+..
T Consensus 446 ---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 446 ---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ---CCCCCcccCchHHHHHHHHHHH
Confidence 2222222445566666666555
No 381
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.77 E-value=63 Score=27.47 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=13.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 048749 264 LNGWCVLGNVYEAKRFWKDIIK 285 (536)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~m~~ 285 (536)
+-.|.+.|.+++|.++++....
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3455666666666666666654
No 382
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.46 E-value=63 Score=27.47 Aligned_cols=20 Identities=5% Similarity=-0.032 Sum_probs=9.5
Q ss_pred HHHccCChhHHHHHHHHHHH
Q 048749 440 LYVNWDCEDKVRHTWEEMEK 459 (536)
Q Consensus 440 ~~~~~g~~~~A~~~~~~m~~ 459 (536)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34444555555554444443
No 383
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=59.29 E-value=15 Score=29.13 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=16.7
Q ss_pred HHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048749 406 LKSLKKPEEVPWVLERMERNGCKMSTDTYNVILK 439 (536)
Q Consensus 406 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 439 (536)
+.+++...++-.+|+.|.+.|-+|| .|+.|+.
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 3444555555566666666665554 2444443
No 384
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=58.60 E-value=2.7e+02 Score=30.12 Aligned_cols=92 Identities=13% Similarity=0.003 Sum_probs=57.6
Q ss_pred HHHHhhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHH
Q 048749 110 EKALNQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEK 189 (536)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 189 (536)
.+.+...++.++...+..+.+...|++..|+.+++.+...++ +..+... ...|....+..
T Consensus 188 ~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~---~~It~~~-----------------V~~~LG~~d~~ 247 (830)
T PRK07003 188 ERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA---NEVTETA-----------------VSGMLGALDQT 247 (830)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---CCcCHHH-----------------HHHHhCCCCHH
Confidence 344455688888888888888888899999998887654321 1111111 11222234444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD 222 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 222 (536)
.+..++..+. .++..+++.+++++...|+...
T Consensus 248 ~i~~ll~aL~-~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 248 YMVRLLDALA-AGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCHH
Confidence 4555555443 4788888888888888776543
No 385
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.38 E-value=33 Score=23.19 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=8.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHH
Q 048749 298 FVNALTKKGKLGTALRLFQAM 318 (536)
Q Consensus 298 li~~~~~~g~~~~a~~~~~~m 318 (536)
+|.+|...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444333
No 386
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.29 E-value=1.4e+02 Score=26.61 Aligned_cols=22 Identities=5% Similarity=0.194 Sum_probs=13.5
Q ss_pred HhcCCHhHHHHHHHHHHHcCCC
Q 048749 303 TKKGKLGTALRLFQAMWEKGRK 324 (536)
Q Consensus 303 ~~~g~~~~a~~~~~~m~~~g~~ 324 (536)
+..+++.+|+++|++.....+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4456666777777766655443
No 387
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=57.03 E-value=97 Score=26.36 Aligned_cols=48 Identities=15% Similarity=0.085 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHHHhcC----C-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 184 DLVNEKTYGILLNRYAAAH----M-------VEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 184 ~~~~~~~~~~li~~~~~~g----~-------~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
.+....++..+..+|...+ + +++|.+.|++.... .|+...|+.-+...
T Consensus 65 ~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 65 NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 4444455555555554432 1 33333333333332 45555665555554
No 388
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.72 E-value=85 Score=27.19 Aligned_cols=83 Identities=13% Similarity=-0.016 Sum_probs=35.9
Q ss_pred HHccCCHHHHHHHHHhCC--CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048749 166 LGRARRFVELIQVFDEMP--DLV-----NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKH 238 (536)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~--~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 238 (536)
+.++|++++|..-|.... .++ ....|..-..++.+.+.++.|++--.+.++.+ +....+...-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 345555555555554443 111 11223333344555555666655555555443 1111122222234444445
Q ss_pred HHHHHHHHHHh
Q 048749 239 VEVAETFFESE 249 (536)
Q Consensus 239 ~~~a~~~~~~~ 249 (536)
++.|++=|..+
T Consensus 184 ~eealeDyKki 194 (271)
T KOG4234|consen 184 YEEALEDYKKI 194 (271)
T ss_pred HHHHHHHHHHH
Confidence 55555444443
No 389
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.97 E-value=15 Score=29.16 Aligned_cols=32 Identities=13% Similarity=0.399 Sum_probs=24.9
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048749 443 NWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGL 476 (536)
Q Consensus 443 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 476 (536)
..|.-..|-.+|++|.+.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346666889999999999988875 77777654
No 390
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=55.85 E-value=1.6e+02 Score=27.84 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=24.0
Q ss_pred hcCCHhHHHHHHHHHHHc---CCCCCHhhH--HHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 304 KKGKLGTALRLFQAMWEK---GRKPDVVTC--NCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~---g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
+.++.++|+++++++.+. --.|+.+.| +.+...+...|+.+++.+++++..+
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334555555555555443 123343333 2233344455555555555555544
No 391
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=55.38 E-value=3.1e+02 Score=29.81 Aligned_cols=223 Identities=12% Similarity=0.060 Sum_probs=116.9
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHh-------hHHHHHH-HHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 048749 302 LTKKGKLGTALRLFQAMWEKGRKPDVV-------TCNCIID-ALCFKKRIPEALEVLREMKNR----GCLPNVTTYNSLI 369 (536)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-------~~~~li~-~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li 369 (536)
.....++++|..++.+....-..|+.. .++.+-. .....|++++|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345788999999999887753232221 2333322 123468889988888776543 2334566777778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHH---HHHHHHh-----cCCC--ChHHHHHHHHHHC--CCC----CCHHH
Q 048749 370 KHLCKIKRMETVYEYLDEMEQKNGSCLPNEIT---FNYLLKS-----LKKP--EEVPWVLERMERN--GCK----MSTDT 433 (536)
Q Consensus 370 ~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~---~~~ll~~-----~~~~--~~a~~~~~~~~~~--~~~----~~~~~ 433 (536)
.+..-.|++++|..+..+..+.. ..-+... |..+..+ -|.. .+.+..+...... +-+ +-.-+
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a--~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMA--RQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHH--HHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 88888999999999888776543 2223222 2222222 1311 1222333333221 111 12344
Q ss_pred HHHHHHHHHcc-CChhHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----cHHHH--
Q 048749 434 YNVILKLYVNW-DCEDKVRHTWEEMEKKGMGPDQRSY--TVMIHGLYDKGRLEDALSYFHEMRLKGMVP----EPRTG-- 504 (536)
Q Consensus 434 ~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~-- 504 (536)
+..++.++.+. +...++..-++--......|-...+ ..|.......|+.++|...++++......+ +....
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 55555555551 1122222222222222222222222 356778888999999999999988753333 33332
Q ss_pred HHHHHHHHhhhhhhhhhHHHHH
Q 048749 505 ILVNDMNIKLKERGEQGKKVIK 526 (536)
Q Consensus 505 ~~l~~~~~~~~~~~~a~~~~~~ 526 (536)
.+-.......|+.+++.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 2222233334555555555544
No 392
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=55.37 E-value=1.5e+02 Score=30.26 Aligned_cols=34 Identities=9% Similarity=-0.025 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048749 188 EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD 222 (536)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 222 (536)
....-.++.+.. .|+..+|+.+++++...|..|.
T Consensus 258 ~~~if~L~~ai~-~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 258 SSVIIEFVEYII-HRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 333444444443 4778888888888888776544
No 393
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.30 E-value=2e+02 Score=28.07 Aligned_cols=14 Identities=7% Similarity=-0.208 Sum_probs=7.9
Q ss_pred cCChhHHHHHHHHH
Q 048749 444 WDCEDKVRHTWEEM 457 (536)
Q Consensus 444 ~g~~~~A~~~~~~m 457 (536)
.|+++.|...+-++
T Consensus 254 ~gryddAvarlYR~ 267 (379)
T PF09670_consen 254 QGRYDDAVARLYRA 267 (379)
T ss_pred cCCHHHHHHHHHHH
Confidence 56777665544433
No 394
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=55.25 E-value=46 Score=25.48 Aligned_cols=43 Identities=12% Similarity=0.278 Sum_probs=31.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 048749 123 DLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGR 168 (536)
Q Consensus 123 ~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 168 (536)
.+++..|++|. .-+.|+++.+|+.+.+ ..+...-+.|-..+.+
T Consensus 65 PtViD~lrRC~-T~EEALEVInylek~G--EIt~e~A~eLr~~L~~ 107 (128)
T PF09868_consen 65 PTVIDYLRRCK-TDEEALEVINYLEKRG--EITPEEAKELRSILVK 107 (128)
T ss_pred ChHHHHHHHhC-cHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 46788888886 8899999999999987 4455555555544443
No 395
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=55.25 E-value=1.8e+02 Score=30.89 Aligned_cols=35 Identities=9% Similarity=-0.113 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD 222 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 222 (536)
+......++.++. .++...++.+++++...|+.+.
T Consensus 245 d~~~If~LldAL~-~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 245 DKQYLYELLTGII-NQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCHH
Confidence 3334445555554 4888999999999998886544
No 396
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.92 E-value=2.1e+02 Score=27.85 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 258 KTMNIILNGWCVLGNVYEAKRFWKDIIKSK--CEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
..+.-+...|..+|+++.|++.|....+-- .+-.+..|-.+|..-.-.|+|..+..+..+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 356666777777777777777776644321 112234455555555556666666665555544
No 397
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=54.39 E-value=88 Score=29.04 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=53.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCCHHHH
Q 048749 416 PWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYD----------KGRLEDA 485 (536)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----------~g~~~~A 485 (536)
.++|+.+.+.++.|.-..+..+.-.+.+.=.+...+.+|+.+.. |..-|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 46788888888999988888888888888888899999998886 33337777776653 4676666
Q ss_pred HHHHH
Q 048749 486 LSYFH 490 (536)
Q Consensus 486 ~~~~~ 490 (536)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 66554
No 398
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=54.27 E-value=2.5e+02 Score=29.98 Aligned_cols=35 Identities=11% Similarity=0.035 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 048749 468 SYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRT 503 (536)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 503 (536)
....|+.++.. |+.+.++.++++|...|+.+....
T Consensus 248 ~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~~~l 282 (709)
T PRK08691 248 YLYELLTGIIN-QDGAALLAKAQEMAACAVGFDNAL 282 (709)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHHHH
Confidence 34445555444 667777777777777777665444
No 399
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=54.23 E-value=2.4e+02 Score=30.50 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 048749 465 DQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPE 500 (536)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 500 (536)
|...+..++.++.. |+.++++.+++++...|+.+.
T Consensus 245 d~~~i~~ll~aL~~-~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 245 DQTYMVRLLDALAA-GDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 33334444444433 667777777777776666554
No 400
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=54.02 E-value=28 Score=24.74 Aligned_cols=42 Identities=21% Similarity=0.146 Sum_probs=28.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhhhh
Q 048749 478 DKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERGE 519 (536)
Q Consensus 478 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~ 519 (536)
-.|+.+.+.+++++..+.|+.|.......+.....+.|+..+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~w~ 54 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGELWE 54 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777777777777777777766666666666666543
No 401
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.26 E-value=1.9e+02 Score=26.70 Aligned_cols=121 Identities=12% Similarity=0.128 Sum_probs=54.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHhcCCHhHHHHHHHHHH----HcCCCCCHhhHHHHHHH
Q 048749 268 CVLGNVYEAKRFWKDIIKSKCEPDSVT-------YATFVNALTKKGKLGTALRLFQAMW----EKGRKPDVVTCNCIIDA 336 (536)
Q Consensus 268 ~~~g~~~~A~~~~~~m~~~g~~~~~~~-------~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~p~~~~~~~li~~ 336 (536)
.+.+++++|+..+.++...|+..|..+ ...+...|...|+...--++..... +-..+....+..++|..
T Consensus 14 v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiek 93 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEK 93 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHh
Confidence 345555666666666655555444322 3344455555555443333322211 11111123334444444
Q ss_pred HHhc-CChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 337 LCFK-KRIPEALEVLREMKNRGCLP-----NVTTYNSLIKHLCKIKRMETVYEYLDEM 388 (536)
Q Consensus 337 ~~~~-g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~~~~~~A~~~~~~m 388 (536)
+-.. ..++..+.+.....+-..+- -...-..+|..+.+.|.+.+|+.+...+
T Consensus 94 f~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 94 FPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4322 22344444433332211000 1122234677777888888877665443
No 402
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=52.67 E-value=1.9e+02 Score=26.68 Aligned_cols=98 Identities=12% Similarity=0.033 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH-
Q 048749 430 STDTYNVILKLYVNWDCEDKVRHTWEEMEK----KGMGPDQRSYTV-MIHGLYDKGRLEDALSYFHEMRLKGMVPEPRT- 503 (536)
Q Consensus 430 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t- 503 (536)
-...+..+..-|++.++.+.+.+..++..+ .|.+.|...-.+ |.-.|....-+++-++..+.|+++|-.-+...
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 345666777888888888888777766543 355544432221 11122333345777888888888876554443
Q ss_pred HHHHHHHH-HhhhhhhhhhHHHHHh
Q 048749 504 GILVNDMN-IKLKERGEQGKKVIKL 527 (536)
Q Consensus 504 ~~~l~~~~-~~~~~~~~a~~~~~~~ 527 (536)
|.....++ ....++.+|..++.+.
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~ 218 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDI 218 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333322 2345666777777663
No 403
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.47 E-value=1.1e+02 Score=24.28 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 449 KVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHE 491 (536)
Q Consensus 449 ~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 491 (536)
.+.++|+.|...|+.-. ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 56666666665554332 34455555555666666666666554
No 404
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.41 E-value=95 Score=23.86 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 295 YATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 295 ~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
|..++..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555544
No 405
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.84 E-value=2.4e+02 Score=27.52 Aligned_cols=60 Identities=3% Similarity=-0.064 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP-----DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKE 216 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (536)
..+.-+.+-|..+|+++.|++.+.+.. .......|-.+|..-...|+|........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 356667777888888888888888865 122334555666666667777777666666554
No 406
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.68 E-value=2.9e+02 Score=28.37 Aligned_cols=36 Identities=8% Similarity=-0.035 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 048749 467 RSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRT 503 (536)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 503 (536)
.....++.++.. |+.+.++.++++|...|..|....
T Consensus 247 ~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~il 282 (509)
T PRK14958 247 LLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSNAL 282 (509)
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 334444444443 667777777777777777665433
No 407
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=51.54 E-value=29 Score=18.16 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 468 SYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
.|..+...+...|++++|...++..++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455666777778888888888877664
No 408
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.48 E-value=36 Score=31.42 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLL 230 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 230 (536)
+..-|+..|..-.+.||+++|+.++++..+.|+.--..+|...+
T Consensus 256 Te~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 256 TESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 33457899999999999999999999999999776666665443
No 409
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=50.77 E-value=3.8e+02 Score=29.49 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCcHHHHHHHHHHHHhhhhh
Q 048749 447 EDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK-GMVPEPRTGILVNDMNIKLKER 517 (536)
Q Consensus 447 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~l~~~~~~~~~~ 517 (536)
.|.-.+.|.++.+-=-.-|..+|..-..-+...|++..|++++.++++. |-.++...+..+++.+...|=.
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 3344455555544211236666666666677778888888888887764 5566666677777666665543
No 410
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=50.71 E-value=1e+02 Score=31.87 Aligned_cols=75 Identities=8% Similarity=0.018 Sum_probs=49.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHH------HHHHHHHhcCCCCCCHHHHHHHH
Q 048749 193 ILLNRYAAAHMVEEAIGVFDRRKEFG--ELDDLSAFQNLLLWLCRYKHVEV------AETFFESEKNEFGYDIKTMNIIL 264 (536)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~li 264 (536)
+|+.+|..+|++..+.++++...... -+.-...+|..++...+.|.++. |.+.+++.. +..|..+|..|+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~--ln~d~~t~all~ 110 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR--LNGDSLTYALLC 110 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh--cCCcchHHHHHH
Confidence 78888888888888888888877543 23335567777777788886543 444444432 344667777776
Q ss_pred HHHHh
Q 048749 265 NGWCV 269 (536)
Q Consensus 265 ~~~~~ 269 (536)
.+-..
T Consensus 111 ~~sln 115 (1117)
T COG5108 111 QASLN 115 (1117)
T ss_pred HhhcC
Confidence 65544
No 411
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.59 E-value=30 Score=31.98 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=26.4
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHH
Q 048749 433 TYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSY 469 (536)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 469 (536)
-|+..|....+.||+++|+.++++.++.|+.--..++
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3567777788888888888888888887765444444
No 412
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.28 E-value=2.7e+02 Score=27.63 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHHHHCCCCC
Q 048749 271 GNVYEAKRFWKDIIKSKCEP 290 (536)
Q Consensus 271 g~~~~A~~~~~~m~~~g~~~ 290 (536)
++.+.|+.++..|.+.|..|
T Consensus 244 sd~~aal~~l~~~l~~G~d~ 263 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDP 263 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44444555555555444433
No 413
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.12 E-value=1e+02 Score=22.79 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=12.2
Q ss_pred HHHHHHccCCHHHHHHHHHhCC
Q 048749 162 ILDVLGRARRFVELIQVFDEMP 183 (536)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~~~ 183 (536)
+.......|++++|...+++..
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3344455666666666665544
No 414
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=48.71 E-value=2e+02 Score=25.74 Aligned_cols=38 Identities=24% Similarity=0.544 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH
Q 048749 289 EPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV 327 (536)
Q Consensus 289 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 327 (536)
.|.+.....++..| ..+++++|.+++.++.+.|+.|..
T Consensus 236 ~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 236 EPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred CCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH
Confidence 45555556666544 346677777777777777776643
No 415
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.34 E-value=2.2e+02 Score=26.02 Aligned_cols=246 Identities=11% Similarity=0.175 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc--CCCCC---Hh
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIK---SKCE--PDSVTYATFVNALTKKGKLGTALRLFQAMWEK--GRKPD---VV 328 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~ 328 (536)
+.-.+|..+.+.|++++....+.+|.. ..+. -+..+.|+++.--....+.+.-..+|+.-.+. .-+.+ -.
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 344556666677777777666666542 1111 12334555555444444444433333322211 00000 11
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 048749 329 TCNCIIDALCFKKRIPEALEVLREMKNR-----GCL------PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLP 397 (536)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~------p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p 397 (536)
|-+.|-..|...|++.+..++++++... |-. -=...|..-|+.|....+-.+...+|++...... ..|
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKS-AIP 225 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKS-AIP 225 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhc-cCC
Confidence 2244556666777777777777776532 100 0145677778888888887777788877665442 345
Q ss_pred cHHHHHHHHHhcC-CC----ChHH-------HHHHHHHHCCCCCCHHH--HHHHHHHHHccCChhHHHHHHHHHHHC--C
Q 048749 398 NEITFNYLLKSLK-KP----EEVP-------WVLERMERNGCKMSTDT--YNVILKLYVNWDCEDKVRHTWEEMEKK--G 461 (536)
Q Consensus 398 ~~~~~~~ll~~~~-~~----~~a~-------~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~--g 461 (536)
.... ..+++-|+ +. ++.+ +.|+...+.|-+.-..+ |..|.+++.+.|- .-|+.-... .
T Consensus 226 HPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyK 299 (440)
T KOG1464|consen 226 HPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYK 299 (440)
T ss_pred chHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCC
Confidence 4443 34556663 21 2222 33333344553322222 3444455554431 011111111 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh
Q 048749 462 MGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIK 513 (536)
Q Consensus 462 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~ 513 (536)
-.|.....+.|+.+|.+ ++..+-.+++..=. .++.-|+.....+-+.+..
T Consensus 300 NdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~-~~IM~DpFIReh~EdLl~n 349 (440)
T KOG1464|consen 300 NDPEILAMTNLVAAYQN-NDIIEFERILKSNR-SNIMDDPFIREHIEDLLRN 349 (440)
T ss_pred CCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhh-ccccccHHHHHHHHHHHHH
Confidence 23556677888888865 45555554444322 3567777776665555443
No 416
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=48.24 E-value=1.1e+02 Score=31.17 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=49.7
Q ss_pred hcCCHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 048749 235 RYKHVEVAETFFESEK-NEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 235 ~~~~~~~a~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 313 (536)
-.|+...|...+...- ..-....+....|.....+.|....|..++.+..... .....++..+.+++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 3456666655555421 1100111122233333444455556666665555443 3334556666667777777777777
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHH
Q 048749 314 LFQAMWEKGRKPDVVTCNCIIDA 336 (536)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~li~~ 336 (536)
.|++..+... .+...-+.|...
T Consensus 698 ~~~~a~~~~~-~~~~~~~~l~~i 719 (886)
T KOG4507|consen 698 AFRQALKLTT-KCPECENSLKLI 719 (886)
T ss_pred HHHHHHhcCC-CChhhHHHHHHH
Confidence 7776666422 234444444433
No 417
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=48.08 E-value=1.8e+02 Score=25.06 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=7.5
Q ss_pred cCCHhHHHHHHHHHHH
Q 048749 305 KGKLGTALRLFQAMWE 320 (536)
Q Consensus 305 ~g~~~~a~~~~~~m~~ 320 (536)
.|+++.|.+.++-|..
T Consensus 134 ~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 134 KGSFEEAERFLKFMEK 149 (204)
T ss_pred hccHHHHHHHHHHHHH
Confidence 3444555544444443
No 418
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.02 E-value=1e+02 Score=24.49 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 048749 138 AAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFD 180 (536)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 180 (536)
.+.++|..+..++=..--+.-|......+...|++++|.++|.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666666666554223334456666666666666666666665
No 419
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=47.62 E-value=2.2e+02 Score=26.00 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048749 255 YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCII 334 (536)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 334 (536)
-|......+...|.+.|++.+|...|-.- -.++...+..++......|...++ |...-. .+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~R-aV 148 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIAR-AV 148 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHH-HH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcCCcch--------------hHHHHH-HH
Confidence 46777788888888888888887765221 123333333344333333333332 222222 23
Q ss_pred HHHHhcCChHHHHHHHHHHHHC
Q 048749 335 DALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
--|.-.++...|...++...+.
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 3355677788888777766543
No 420
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.43 E-value=3.7e+02 Score=28.38 Aligned_cols=77 Identities=12% Similarity=0.140 Sum_probs=41.6
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 424 RNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGM-------------GPDQRSYTVMIHGLYDKGRLEDALSYFH 490 (536)
Q Consensus 424 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~~~~~li~~~~~~g~~~~A~~~~~ 490 (536)
+.|+..+......++.. ..|++..+..++++....|- .++......++.++.. |+...++.+++
T Consensus 198 ~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~-~d~~~al~~l~ 274 (618)
T PRK14951 198 AENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ-GDGRTVVETAD 274 (618)
T ss_pred HcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 34555555544444442 33556566555554432220 1233344445555444 67788888888
Q ss_pred HHHHCCCCCcHHH
Q 048749 491 EMRLKGMVPEPRT 503 (536)
Q Consensus 491 ~m~~~g~~p~~~t 503 (536)
+|.+.|..|....
T Consensus 275 ~l~~~G~~~~~il 287 (618)
T PRK14951 275 ELRLNGLSAASTL 287 (618)
T ss_pred HHHHcCCCHHHHH
Confidence 8888777666443
No 421
>PF13934 ELYS: Nuclear pore complex assembly
Probab=47.19 E-value=2.1e+02 Score=25.53 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=10.9
Q ss_pred HHHHHHccCCHHHHHHHHHhCC
Q 048749 162 ILDVLGRARRFVELIQVFDEMP 183 (536)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~~~ 183 (536)
++.++...|+...|..++..+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~ 135 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVG 135 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcC
Confidence 4444444455555555555544
No 422
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.17 E-value=4.3e+02 Score=29.09 Aligned_cols=116 Identities=11% Similarity=0.091 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHhcCCH--hHHHHHHHHHHHcCCCCCHhhHH--
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKC--EP-DSVTYATFVNALTKKGKL--GTALRLFQAMWEKGRKPDVVTCN-- 331 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~-~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~p~~~~~~-- 331 (536)
-|..|+..|...|+.++|+++|.+..+..- .+ -..-+-.++.-+-+.+.. +-++++-+...+....-...+++
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 377888888888999999998888876320 00 011222244444444433 33333333333221110011111
Q ss_pred ----------HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048749 332 ----------CIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCK 374 (536)
Q Consensus 332 ----------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 374 (536)
..+-.|.+....+-+..+++.+....-.++....+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1122355556666667777766554444556666666666654
No 423
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=46.34 E-value=2.4e+02 Score=28.69 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhCC
Q 048749 159 FNAILDVLGRARRFVELIQVFDEMP 183 (536)
Q Consensus 159 ~~~li~~~~~~g~~~~A~~~~~~~~ 183 (536)
...++.-|.+.+++++|..++..|.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 3457778999999999999999998
No 424
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.28 E-value=2.4e+02 Score=28.91 Aligned_cols=32 Identities=13% Similarity=-0.084 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELD 221 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 221 (536)
.....++.++ ..++.++|+.+++++...|..|
T Consensus 243 ~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 243 ERLRGIAAAL-AQGDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCH
Confidence 3344455554 4577788888888877777444
No 425
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.17 E-value=1.4e+02 Score=27.12 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=24.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHc----C-CCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 048749 298 FVNALTKKGKLGTALRLFQAMWEK----G-RKPDVVTCNCIIDALCFKKRIPEALEVLR 351 (536)
Q Consensus 298 li~~~~~~g~~~~a~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 351 (536)
|..-|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+..+.+--
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 334444555555555555544321 1 12233344444555555555555544433
No 426
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=45.98 E-value=2.2e+02 Score=25.33 Aligned_cols=17 Identities=18% Similarity=0.026 Sum_probs=7.6
Q ss_pred HHhcCCHHHHHHHHHHH
Q 048749 267 WCVLGNVYEAKRFWKDI 283 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m 283 (536)
....|++++|++...++
T Consensus 74 ~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 74 AIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHhccHHHHHHHHHHh
Confidence 34444444444444443
No 427
>PRK09857 putative transposase; Provisional
Probab=45.68 E-value=1.8e+02 Score=27.19 Aligned_cols=66 Identities=11% Similarity=0.093 Sum_probs=40.3
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 048749 434 YNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPE 500 (536)
Q Consensus 434 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 500 (536)
+..++.-..+.|+.++..++++.+.+. .++.....-++..-+...|.-++++++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555545666666667776666654 223333444555666666766677777777777777655
No 428
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=45.39 E-value=1.5e+02 Score=23.85 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 048749 429 MSTDTYNVILKLYVNWD---CEDKVRHTWEEMEKKGMGP-DQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRT 503 (536)
Q Consensus 429 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 503 (536)
++..+--.+..++.+.. ++.+.+.+++++.+...+- .....-.|.-++.+.|++++++++.+.+.+. +||..-
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n~Q 106 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNNRQ 106 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCcHH
Confidence 34444444555555544 3455667777776522111 2233334555777888888888888877763 455443
No 429
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=44.78 E-value=2.3e+02 Score=25.21 Aligned_cols=97 Identities=18% Similarity=0.096 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CC--CCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 048749 152 YSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DL--VNEKTY--GILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSA 225 (536)
Q Consensus 152 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~--~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 225 (536)
+.+...-+|.|+--|.-...+.+|-+.|..-. .+ .|..++ ..-|+.....|++++|++..+.+-..-+..|...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 45555556565555554444555555554433 11 333333 2345566777777777777666543333334322
Q ss_pred HHHHHH----HHHhcCCHHHHHHHHHH
Q 048749 226 FQNLLL----WLCRYKHVEVAETFFES 248 (536)
Q Consensus 226 ~~~ll~----~~~~~~~~~~a~~~~~~ 248 (536)
+-.|.. -+.+.|..++|.++.+.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 222211 13455666666666555
No 430
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=44.57 E-value=2.8e+02 Score=26.29 Aligned_cols=155 Identities=14% Similarity=0.114 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 048749 204 VEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV---LGNVYEAKRFW 280 (536)
Q Consensus 204 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~ 280 (536)
.+.-+.++++.++.. +.+......++..+.+..+.+...+.++.+....+-+...|...|..... .-.++....+|
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 345566777766663 45566666777777777777777777777655555577777777765543 23455555555
Q ss_pred HHHHH------CCC----CCC-------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcCC
Q 048749 281 KDIIK------SKC----EPD-------SVTYATFVNALTKKGKLGTALRLFQAMWEKGR-KPDVVTCNCIIDALCFKKR 342 (536)
Q Consensus 281 ~~m~~------~g~----~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~ 342 (536)
.+..+ .+. .+- ...+.-+...+.+.|..+.|..+++.+.+.++ .|+...- ..
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~----------~~ 195 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSS----------SS 195 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcccccc----------cc
Confidence 54432 111 011 12233344445678999999999999988754 3332111 11
Q ss_pred hHHHHHHHHHHHHCCC----CCCHHHHHHHH
Q 048749 343 IPEALEVLREMKNRGC----LPNVTTYNSLI 369 (536)
Q Consensus 343 ~~~A~~~~~~m~~~g~----~p~~~~~~~li 369 (536)
..+.++.|+..-+.|+ .|+..-|...+
T Consensus 196 ~~~~~~~fe~FWeS~vpRiGE~gA~GW~~~~ 226 (321)
T PF08424_consen 196 FSERLESFEEFWESEVPRIGEPGAKGWRKWM 226 (321)
T ss_pred HHHHHHHHHHHhCcCCCCCCCCCcchhhhhh
Confidence 1155666666655543 24555555443
No 431
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=43.96 E-value=2.7e+02 Score=25.80 Aligned_cols=148 Identities=11% Similarity=0.065 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGR----ARRFVELIQVFDEMPDLVNEKTYGILLNRYAA----AHMVE 205 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 205 (536)
.++..+...+......+ +......+...|.. ..+..+|.+.|..............|...|.. ..+..
T Consensus 55 ~~~~~a~~~~~~a~~~~----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~ 130 (292)
T COG0790 55 PDYAKALKSYEKAAELG----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLV 130 (292)
T ss_pred ccHHHHHHHHHHhhhcC----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHH
Confidence 56777777777776643 33555555555554 44677888888866644445555556666665 34788
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHH
Q 048749 206 EAIGVFDRRKEFGELDDLSAFQNLLLWLCRYK-------HVEVAETFFESEKNEFGYDIKTMNIILNGWCV----LGNVY 274 (536)
Q Consensus 206 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 274 (536)
+|...|.+..+.|..+-..+...+...+..-. +...|...+.+..... +......+...|.. ..+.+
T Consensus 131 ~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~ 208 (292)
T COG0790 131 KALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLK 208 (292)
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHH
Confidence 88888888888885543222333333333321 1124555555532211 33333333333322 33555
Q ss_pred HHHHHHHHHHHCC
Q 048749 275 EAKRFWKDIIKSK 287 (536)
Q Consensus 275 ~A~~~~~~m~~~g 287 (536)
+|..+|....+.|
T Consensus 209 ~A~~wy~~Aa~~g 221 (292)
T COG0790 209 KAFRWYKKAAEQG 221 (292)
T ss_pred HHHHHHHHHHHCC
Confidence 6666666655554
No 432
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=43.87 E-value=2.8e+02 Score=26.07 Aligned_cols=59 Identities=10% Similarity=-0.056 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 294 TYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 294 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
....++....+.|..+....+++..... .+...-..++.+.+...+.+...++++....
T Consensus 171 lr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 171 LRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 3334444444444443333333332221 2344445555555555555555555555554
No 433
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=43.71 E-value=95 Score=28.99 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCC
Q 048749 333 IIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKP 412 (536)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~ 412 (536)
++..+.+.++..+..+.++.+. ....-...++.....|++..|++++.+..+ ..-....|+.+=.--.+.
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~----~l~~l~~~~c~~~L~~~L 173 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ----LLEELKGYSCVRHLSSQL 173 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----HHHhcccchHHHHHhHHH
Q ss_pred ChHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCChhHHHH
Q 048749 413 EEVPWVLERMERNG-----CKMSTDTYNVILKLYVNWDCEDKVRH 452 (536)
Q Consensus 413 ~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~ 452 (536)
++.....+.+.+.. ...|+..|..+..+|.-.|+...+.+
T Consensus 174 ~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 174 QETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
No 434
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.27 E-value=1e+02 Score=33.10 Aligned_cols=131 Identities=14% Similarity=0.114 Sum_probs=62.0
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTAL 312 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 312 (536)
+..+|+++.|++.-..+. +..+|..|.....+.|+.+-|+..|+.... |..|--.|.-.|+.++-.
T Consensus 653 aLe~gnle~ale~akkld-----d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD-----DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC-----cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 344555555555443322 455566666666666666666555555431 222222334445555544
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 313 RLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 313 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
++.+....+ .|..+ ....-.-.|+.++-.++++.. |..| ..|- .-...|.-++|.++..+.....
T Consensus 719 Km~~iae~r---~D~~~---~~qnalYl~dv~ervkIl~n~---g~~~--layl----ta~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 719 KMMKIAEIR---NDATG---QFQNALYLGDVKERVKILENG---GQLP--LAYL----TAAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HHHHHHHhh---hhhHH---HHHHHHHhccHHHHHHHHHhc---Cccc--HHHH----HHhhcCcHHHHHHHHHhhcccc
Confidence 433333222 12111 111111245666655555433 2222 1221 1233577788999888887644
No 435
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=43.23 E-value=1.4e+02 Score=22.92 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=45.6
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Q 048749 435 NVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGR--LEDALSYFHEMRLKGMVPEPRTGILVNDMNI 512 (536)
Q Consensus 435 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~ 512 (536)
..++.-|...|+.++|...++++... .-.......++..+...++ -+.+..++..+.+.+..+.......+...+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~ 83 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLE 83 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 45666777788999988888775332 1123344455555554422 3446777888888877665554444444444
Q ss_pred hhhhh
Q 048749 513 KLKER 517 (536)
Q Consensus 513 ~~~~~ 517 (536)
...+.
T Consensus 84 ~l~Dl 88 (113)
T PF02847_consen 84 SLEDL 88 (113)
T ss_dssp HHHHH
T ss_pred Hhhhc
Confidence 44333
No 436
>PRK09462 fur ferric uptake regulator; Provisional
Probab=43.02 E-value=1e+02 Score=25.27 Aligned_cols=63 Identities=19% Similarity=0.177 Sum_probs=43.9
Q ss_pred HHHHHhhcCCCCCHH--HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCH
Q 048749 109 IEKALNQCELTLTDD--LIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRF 172 (536)
Q Consensus 109 ~~~~l~~~~~~~~~~--~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 172 (536)
+.+.|...|..+++. .++.+|....+.+-.|.++++.+.+.+ ...+..|-...|+.+.+.|-+
T Consensus 4 ~~~~l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~-~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 4 NNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMG-EEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHCCCE
Confidence 455667777776654 567777764445778899999988765 456777766777787777754
No 437
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=42.58 E-value=4.3e+02 Score=27.87 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRY 236 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 236 (536)
.|. +|-.|.+.|++++|.++..+... ........|...+..+...
T Consensus 114 ~Wa-~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWA-LIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHH-HHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 453 44556778888888877755443 2344445556666666554
No 438
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=42.54 E-value=3.9e+02 Score=27.33 Aligned_cols=97 Identities=14% Similarity=0.177 Sum_probs=64.4
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCC
Q 048749 107 GEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLV 186 (536)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 186 (536)
..+...+.+.++..+.+.+.-+.+...|....|+.+++.+...+. +..++..+-++++- .
T Consensus 185 ~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~---~~It~~~v~~~lG~-----------------~ 244 (515)
T COG2812 185 KHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGE---GEITLESVRDMLGL-----------------T 244 (515)
T ss_pred HHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccC---CcccHHHHHHHhCC-----------------C
Confidence 444555567788888888888888878889999999999887642 44444444444322 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLS 224 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 224 (536)
+......++.+ ...++..+++..++++.+.|..|...
T Consensus 245 ~~~~~~~~~~~-i~~~d~~~~~~~~~~l~~~G~~~~~~ 281 (515)
T COG2812 245 DIEKLLSLLEA-ILKGDAKEALRLINELIEEGKDPEAF 281 (515)
T ss_pred CHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCcCHHHH
Confidence 22222223322 34688999999999999998766543
No 439
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=41.91 E-value=1e+02 Score=20.86 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=32.6
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHH
Q 048749 441 YVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGL-----YDKGRLEDALSYF 489 (536)
Q Consensus 441 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-----~~~g~~~~A~~~~ 489 (536)
+...|++-+|-++++++-..--.|....|..||... .+.|+.+.|..++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 445788888989888887543334566777777654 3668888777654
No 440
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=41.80 E-value=1.3e+02 Score=24.58 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=45.3
Q ss_pred hHHHHHHhhcCCCCCHH--HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC
Q 048749 107 GEIEKALNQCELTLTDD--LIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARR 171 (536)
Q Consensus 107 ~~~~~~l~~~~~~~~~~--~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 171 (536)
.++.+.|++.|.++++. .++.+|.... ++-.|.++++++.+.+ ...+..|-...++.+...|-
T Consensus 6 ~~~~~~lk~~glr~T~qR~~vl~~L~~~~-~~~sAeei~~~l~~~~-p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 6 EDAIERLKEAGLRLTPQRLAVLELLLEAD-GHLSAEELYEELREEG-PGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhC-CCCCHhHHHHHHHHHHHCCC
Confidence 56778888888877765 5677777765 4488999999998865 44555665555677766664
No 441
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=41.49 E-value=2.3e+02 Score=24.43 Aligned_cols=58 Identities=10% Similarity=0.028 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC--------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 330 CNCIIDALCFKKRIPEALEVLREMKNRG--------------CLPNVTTYNSLIKHLCKIKRMETVYEYLDE 387 (536)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 387 (536)
--+++..|.+.-++.++.++++.|.+.. ..+--...|.-...+.+.|..|.|..++++
T Consensus 135 GiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 135 GISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3467778889999999999999886532 122344567777889999999999999884
No 442
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=40.05 E-value=2.6e+02 Score=24.65 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=10.5
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 048749 476 LYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 476 ~~~~g~~~~A~~~~~~m~~~ 495 (536)
..+.|+.++|.+.|.+++..
T Consensus 175 ~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 175 NRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHhCCHHHHHHHHHHHHcC
Confidence 33445555555555555544
No 443
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.87 E-value=4.8e+02 Score=27.55 Aligned_cols=35 Identities=11% Similarity=-0.018 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD 222 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 222 (536)
+......++.++. .|+...++++++++.+.|..+.
T Consensus 250 ~~~~i~~LldaL~-~~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 250 DRSHVFRLIDALA-QGDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 3344444555544 3788888888888888775543
No 444
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=39.86 E-value=46 Score=18.04 Aligned_cols=12 Identities=8% Similarity=0.462 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 048749 273 VYEAKRFWKDII 284 (536)
Q Consensus 273 ~~~A~~~~~~m~ 284 (536)
.+.|..+|+.+.
T Consensus 3 ~~~~r~i~e~~l 14 (33)
T smart00386 3 IERARKIYERAL 14 (33)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 445
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=39.51 E-value=2.1e+02 Score=23.36 Aligned_cols=62 Identities=16% Similarity=0.107 Sum_probs=36.2
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048749 314 LFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIK 376 (536)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 376 (536)
+.+.+.+.|++++.. -..++..+.+.++.-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344555566655432 33456666666666777777777777666655555444445555544
No 446
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=39.44 E-value=3.5e+02 Score=25.86 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhh
Q 048749 448 DKVRHTWEEMEKKGMGPDQ----RSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKL 514 (536)
Q Consensus 448 ~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~ 514 (536)
+++..+++++... -|+. ..|..+.......|.++..+.+|++.+..|-.|-......+.+++...
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~k 188 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKMK 188 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 4677777777765 4554 468888888889999999999999999999999888888888887643
No 447
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.10 E-value=3.9e+02 Score=26.33 Aligned_cols=16 Identities=13% Similarity=0.019 Sum_probs=11.8
Q ss_pred CCCCCHHHHHHHHHhc
Q 048749 117 ELTLTDDLIVNVINRY 132 (536)
Q Consensus 117 ~~~~~~~~~~~~l~~~ 132 (536)
+..++...++.+|...
T Consensus 70 ~~~W~~~~VLnvL~sL 85 (404)
T PF10255_consen 70 PDVWNVYSVLNVLYSL 85 (404)
T ss_pred cCcccHHHHHHHHHHH
Confidence 6677777777777764
No 448
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=38.92 E-value=2.6e+02 Score=24.18 Aligned_cols=19 Identities=26% Similarity=0.148 Sum_probs=15.0
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 048749 338 CFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 338 ~~~g~~~~A~~~~~~m~~~ 356 (536)
.+.|+++.|.+.++-|.+.
T Consensus 132 l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 132 LRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 4678899999998888653
No 449
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.71 E-value=2.1e+02 Score=26.75 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048749 312 LRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCK 374 (536)
Q Consensus 312 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 374 (536)
.++|+.+...++.|.-+.+.-+.-.+.+.=.+.+.+.+++.+.. |..-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 46777888888888888877777777777788888888888875 44446666666653
No 450
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=38.47 E-value=1.6e+02 Score=21.61 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=6.4
Q ss_pred CChHHHHHHHHHHH
Q 048749 341 KRIPEALEVLREMK 354 (536)
Q Consensus 341 g~~~~A~~~~~~m~ 354 (536)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 451
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=38.46 E-value=8.6e+02 Score=30.13 Aligned_cols=143 Identities=8% Similarity=0.032 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILD-VLGRARRFVELIQVFDE-MPDLVNEKTYGILLNRYAAAHMVEEAIGVF 211 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 211 (536)
+.+..|+..++.-.....-..-...+..++. .|+.-++++....+... .. .+ ....-|......|++..|...|
T Consensus 1397 ~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-~~---sl~~qil~~e~~g~~~da~~Cy 1472 (2382)
T KOG0890|consen 1397 KAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-DP---SLYQQILEHEASGNWADAAACY 1472 (2382)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-Cc---cHHHHHHHHHhhccHHHHHHHH
Confidence 5788888888774111100112334444444 99999999988877773 32 12 3344455667889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHH
Q 048749 212 DRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNII-LNGWCVLGNVYEAKRFWK 281 (536)
Q Consensus 212 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~ 281 (536)
+.+.+.+ ++...+++.++......|.++.+.-..+.......+....|+.+ +.+--+.++++.......
T Consensus 1473 e~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1473 ERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 9999876 45577888888888888888888776666544434444444443 334456777776666554
No 452
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.26 E-value=87 Score=21.43 Aligned_cols=49 Identities=10% Similarity=0.035 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048749 255 YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTK 304 (536)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 304 (536)
|....++-+++.+++..-.+.++..+.+....| ..+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 444556666666666666666666666666666 2455555555554443
No 453
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=38.08 E-value=3.9e+02 Score=26.01 Aligned_cols=104 Identities=11% Similarity=0.142 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHH------------HHHHHhcCChHHHHHHHHHHHHCCC-CCCH
Q 048749 296 ATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCI------------IDALCFKKRIPEALEVLREMKNRGC-LPNV 362 (536)
Q Consensus 296 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~-~p~~ 362 (536)
..|...+-..|++++|..++.+.. +.||.++ +..|.-.+++-.|--+-+++...-+ .||.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~ 207 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDV 207 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccH
Confidence 345566777899999988876643 3344443 4556677788877766665533211 2343
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 048749 363 -----TTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLK 407 (536)
Q Consensus 363 -----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~ 407 (536)
.-|+.+++.....+.+=.+.+.|+.....+. +..|..-|...+.
T Consensus 208 ~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~-vk~d~~kw~~vL~ 256 (439)
T KOG1498|consen 208 QELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGN-VKEDPEKWIEVLR 256 (439)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccc-cccChhhhhhhhh
Confidence 3478888888788888888888888876654 4445555554444
No 454
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=37.73 E-value=1.2e+02 Score=20.75 Aligned_cols=49 Identities=27% Similarity=0.317 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048749 186 VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCR 235 (536)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 235 (536)
+....++.++..+++..-.+.++..+.+..+.|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3345677777777777778888888888887773 566666666655544
No 455
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=37.72 E-value=3e+02 Score=24.68 Aligned_cols=50 Identities=12% Similarity=0.276 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCC
Q 048749 360 PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPE 413 (536)
Q Consensus 360 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~ 413 (536)
|.+.....++..|. .+++++|.+++.++-+.| ..|.. ..+.+++.+...+
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lg--ysp~D-ii~~~FRv~K~~~ 286 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLG--YSPED-IITTLFRVVKNMD 286 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcC--CCHHH-HHHHHHHHHHhcc
Confidence 45555555555443 356777777777766666 44432 2334444444443
No 456
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=37.65 E-value=1.2e+02 Score=19.80 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=26.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048749 436 VILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVM 472 (536)
Q Consensus 436 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 472 (536)
.+.-++.+.|++++|.+..+.+.+. .|+..-...|
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHH
Confidence 4566789999999999999999986 6776554444
No 457
>PHA03100 ankyrin repeat protein; Provisional
Probab=37.64 E-value=3.2e+02 Score=27.56 Aligned_cols=151 Identities=14% Similarity=0.160 Sum_probs=66.5
Q ss_pred HHHHHHHccCCHHHHHHHHHhCCC--CCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHH
Q 048749 161 AILDVLGRARRFVELIQVFDEMPD--LVNEKTYGILLNR-----YAAAHMVEEAIGVFDRRKEFGELDDLS---AFQNLL 230 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~ll 230 (536)
..+...++.|+.+-+..+++.-.. ..+.... ..+.. .+..|..+ +.+.+.+.|..++.. ..+ .+
T Consensus 37 t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~-t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~t-pL 110 (480)
T PHA03100 37 LPLYLAKEARNIDVVKILLDNGADINSSTKNNS-TPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGIT-PL 110 (480)
T ss_pred hhhhhhhccCCHHHHHHHHHcCCCCCCccccCc-CHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCCc-hh
Confidence 344455667777777777765442 1222222 22333 33444433 334445556444322 222 23
Q ss_pred HHHH--hcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHh
Q 048749 231 LWLC--RYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLG--NVYEAKRFWKDIIKSKCEPDSVTY--ATFVNALTK 304 (536)
Q Consensus 231 ~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~--~~li~~~~~ 304 (536)
...+ ..|+.+.+..+++.-..-...+..-. ..+..++..| +.+ +.+.+.+.|..++.... .+.+...+.
T Consensus 111 ~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~----iv~~Ll~~g~din~~d~~g~tpL~~A~~ 185 (480)
T PHA03100 111 LYAISKKSNSYSIVEYLLDNGANVNIKNSDGE-NLLHLYLESNKIDLK----ILKLLIDKGVDINAKNRYGYTPLHIAVE 185 (480)
T ss_pred hHHHhcccChHHHHHHHHHcCCCCCccCCCCC-cHHHHHHHcCCChHH----HHHHHHHCCCCcccccCCCCCHHHHHHH
Confidence 3333 66777666666554211101122222 3344445555 433 33444555654433221 223444455
Q ss_pred cCCHhHHHHHHHHHHHcCCCCC
Q 048749 305 KGKLGTALRLFQAMWEKGRKPD 326 (536)
Q Consensus 305 ~g~~~~a~~~~~~m~~~g~~p~ 326 (536)
.|+.+ +.+.+.+.|..++
T Consensus 186 ~~~~~----iv~~Ll~~ga~~~ 203 (480)
T PHA03100 186 KGNID----VIKFLLDNGADIN 203 (480)
T ss_pred hCCHH----HHHHHHHcCCCcc
Confidence 55544 3444445565554
No 458
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=37.42 E-value=1.1e+02 Score=21.38 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGR 168 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 168 (536)
+.+.|.+.+..+... -+-++..||++.+.+.+
T Consensus 12 DtEmA~~mL~DLr~d--ekRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 12 DTEMAQQMLADLRDD--EKRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHHHhcch--hhcChHHHHHHHHHHHH
Confidence 344444444444332 23344555555544443
No 459
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=37.41 E-value=2.7e+02 Score=26.29 Aligned_cols=112 Identities=10% Similarity=0.062 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 414 EVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 414 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
+|+++++...+.+ ..+|+ +......--...+.+.+++...-...-..|..+-.+.|+..+|.+.|+++.
T Consensus 234 ~AE~l~k~ALka~----e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ 302 (556)
T KOG3807|consen 234 DAERLFKQALKAG----ETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLM 302 (556)
T ss_pred HHHHHHHHHHHHH----HHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q ss_pred HCCCCCcHHH-HHHHHHHHHhhhhhhhhhHHHHHhhhccCCCCC
Q 048749 494 LKGMVPEPRT-GILVNDMNIKLKERGEQGKKVIKLTSLGLKGNA 536 (536)
Q Consensus 494 ~~g~~p~~~t-~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~a 536 (536)
+.---..... ...+++++...+...+....+.+.-.+.+.-.|
T Consensus 303 ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA 346 (556)
T KOG3807|consen 303 KEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSA 346 (556)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchH
No 460
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.38 E-value=4.7e+02 Score=26.51 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 048749 465 DQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRT 503 (536)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 503 (536)
+...+..++.++...+....|+.++++|.+.|..|....
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 444555566655555555678888888888887777654
No 461
>PRK09857 putative transposase; Provisional
Probab=36.09 E-value=2.6e+02 Score=26.16 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=10.3
Q ss_pred hcCCHhHHHHHHHHHHHcCCCC
Q 048749 304 KKGKLGTALRLFQAMWEKGRKP 325 (536)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~g~~p 325 (536)
+.|.-++++++...|...|+..
T Consensus 252 qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 252 QEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHHHHHHHHHHcCCCH
Confidence 3333344455555555555443
No 462
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.07 E-value=1.9e+02 Score=26.25 Aligned_cols=59 Identities=12% Similarity=0.046 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 330 CNCIIDALCFKKRIPEALEVLREMKN----RG-CLPNVTTYNSLIKHLCKIKRMETVYEYLDEM 388 (536)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 388 (536)
.-.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+--++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33556667777777777777777631 12 2234555666677777777777766665444
No 463
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=35.94 E-value=2.1e+02 Score=22.30 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=15.0
Q ss_pred CcHHHHHHHHHhc-CCCChHHHHHHHHHHCC
Q 048749 397 PNEITFNYLLKSL-KKPEEVPWVLERMERNG 426 (536)
Q Consensus 397 p~~~~~~~ll~~~-~~~~~a~~~~~~~~~~~ 426 (536)
|..+|..-+-..+ |....+..+++.|.+.|
T Consensus 17 ~~~vtl~elA~~l~cS~Rn~r~lLkkm~~~g 47 (115)
T PF12793_consen 17 PVEVTLDELAELLFCSRRNARTLLKKMQEEG 47 (115)
T ss_pred CcceeHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 4444444444443 44455555666665544
No 464
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.40 E-value=96 Score=23.76 Aligned_cols=63 Identities=13% Similarity=0.182 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh-hhhhhhhhHHHHHhhhccC
Q 048749 469 YTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIK-LKERGEQGKKVIKLTSLGL 532 (536)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~-~~~~~~a~~~~~~~~~~g~ 532 (536)
...++.-|...|+.++|...++++..... -......++..++.+ ....+-...++..+.+.+.
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~~~-~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLPSQ-HHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-GGG-HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 34567788888999999999988643211 112223333333333 2333345555555554443
No 465
>PHA02989 ankyrin repeat protein; Provisional
Probab=35.19 E-value=3.7e+02 Score=27.39 Aligned_cols=180 Identities=14% Similarity=0.117 Sum_probs=83.7
Q ss_pred cCCHHHHHHHHHHhcCCCCCCHHH--HHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCH--h
Q 048749 236 YKHVEVAETFFESEKNEFGYDIKT--MNIILNGWCVLG-NVYEAKRFWKDIIKSKCEPDSVTY-ATFVNALTKKGKL--G 309 (536)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~--~ 309 (536)
..+.+.+..+++ .|..++... .+.+....+..+ +.+ +.+.+.+.|..++...+ .+-+......+.. .
T Consensus 13 ~~~~~~v~~LL~---~GadvN~~~~g~t~l~~~~~~~~~~~~----iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~ 85 (494)
T PHA02989 13 TVDKNALEFLLR---TGFDVNEEYRGNSILLLYLKRKDVKIK----IVKLLIDNGADVNYKGYIETPLCAVLRNREITSN 85 (494)
T ss_pred cCcHHHHHHHHH---cCCCcccccCCCCHHHHHHhcCCCChH----HHHHHHHcCCCccCCCCCCCcHHHHHhccCcchh
Confidence 345555555543 344555431 223333333322 333 44455667766654221 2223334444432 3
Q ss_pred HHHHHHHHHHHcCCCCCHhh---HHHHHHHHH--hcCChHHHHHHHHHHHHCCCCC-CH---HHHHHHHHHHHh-cCCHH
Q 048749 310 TALRLFQAMWEKGRKPDVVT---CNCIIDALC--FKKRIPEALEVLREMKNRGCLP-NV---TTYNSLIKHLCK-IKRME 379 (536)
Q Consensus 310 ~a~~~~~~m~~~g~~p~~~~---~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p-~~---~~~~~li~~~~~-~~~~~ 379 (536)
...++.+.+.+.|..++... .+.+..+.. ..|+ .++.+.+.+.|..+ +. .-++.|..+... .++.+
T Consensus 86 ~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~----~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~ 161 (494)
T PHA02989 86 KIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINN----CDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKD 161 (494)
T ss_pred hHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCc----HHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHH
Confidence 44567788888887665432 334433322 1233 35666677888777 33 223444333222 23433
Q ss_pred HHHHHHHHHHhcCCCCCCcH----HHHHHHHHhcCC--CChHHHHHHHHHHCCCCCCHH
Q 048749 380 TVYEYLDEMEQKNGSCLPNE----ITFNYLLKSLKK--PEEVPWVLERMERNGCKMSTD 432 (536)
Q Consensus 380 ~A~~~~~~m~~~~~~~~p~~----~~~~~ll~~~~~--~~~a~~~~~~~~~~~~~~~~~ 432 (536)
+.+.+.+.| ..++. .-.+.+..++.. ...-.++.+.+.+.|..++..
T Consensus 162 ----iv~~Ll~~G--adi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~ 214 (494)
T PHA02989 162 ----VIKILLSFG--VNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETN 214 (494)
T ss_pred ----HHHHHHHcC--CCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCcccc
Confidence 344445556 44433 111222222111 112346777788888776543
No 466
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=34.66 E-value=6.3e+02 Score=27.44 Aligned_cols=24 Identities=0% Similarity=-0.260 Sum_probs=14.8
Q ss_pred HHHHHHHccCChhHHHHHHHHHHH
Q 048749 436 VILKLYVNWDCEDKVRHTWEEMEK 459 (536)
Q Consensus 436 ~li~~~~~~g~~~~A~~~~~~m~~ 459 (536)
...+-+-..|.++.|+.++....+
T Consensus 627 ~vA~~a~~~G~~~~sI~LY~lag~ 650 (835)
T KOG2168|consen 627 EVASEADEDGLFEDAILLYHLAGD 650 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh
Confidence 334445566777777777766554
No 467
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=34.63 E-value=3.9e+02 Score=25.03 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=15.1
Q ss_pred hhHHHHHHhhcCCCCCHHHHHH
Q 048749 106 KGEIEKALNQCELTLTDDLIVN 127 (536)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~~~ 127 (536)
.+.+.+.++..|..++...+-.
T Consensus 46 le~vak~ldssg~~l~~~rYgd 67 (412)
T KOG2297|consen 46 LELVAKSLDSSGNDLDYRRYGD 67 (412)
T ss_pred HHHHHHHHHhccccccHHHHHH
Confidence 4677788888887777654433
No 468
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.61 E-value=2.8e+02 Score=23.37 Aligned_cols=36 Identities=8% Similarity=-0.028 Sum_probs=17.2
Q ss_pred CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 048749 412 PEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCE 447 (536)
Q Consensus 412 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 447 (536)
.=.+.++++.+.+.+..++..|.--.++.+...|-+
T Consensus 41 hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 334555555555554444444444444444444443
No 469
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.44 E-value=1.9e+02 Score=21.34 Aligned_cols=55 Identities=11% Similarity=-0.016 Sum_probs=33.2
Q ss_pred HHccCChhHHHHHHHHHHH----CCCCCC--HHHH--HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 441 YVNWDCEDKVRHTWEEMEK----KGMGPD--QRSY--TVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 441 ~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
..+.|++..|.+.+.+..+ .+.... ...+ -.+.......|++++|...+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3467888888666555443 222221 1122 22344566779999999999888764
No 470
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=33.71 E-value=2.3e+02 Score=24.65 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 431 TDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQR-SYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 431 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
....+.++..|.-.||++.|-++|.-+.... +.|.. .|..=+..+.+.+.-....++++.|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 3456677788888888888888888887653 33433 355555666666665555566666654
No 471
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.29 E-value=2.1e+02 Score=21.55 Aligned_cols=27 Identities=33% Similarity=0.235 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCCCC
Q 048749 228 NLLLWLCRYKHVEVAETFFESEKNEFG 254 (536)
Q Consensus 228 ~ll~~~~~~~~~~~a~~~~~~~~~~~~ 254 (536)
.|.-.|++.|+.+.+.+-|+.-+.-++
T Consensus 77 hLGlLys~~G~~e~a~~eFetEKalFP 103 (121)
T COG4259 77 HLGLLYSNSGKDEQAVREFETEKALFP 103 (121)
T ss_pred HHHHHHhhcCChHHHHHHHHHhhhhCc
Confidence 445556677777777776666544444
No 472
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=33.24 E-value=1.8e+02 Score=22.39 Aligned_cols=30 Identities=13% Similarity=-0.068 Sum_probs=20.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048749 263 ILNGWCVLGNVYEAKRFWKDIIKSKCEPDSV 293 (536)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 293 (536)
+|+...+|...++|+++++.|.+.| ..+..
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e 96 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPE 96 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 3444567788888888888888777 34433
No 473
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.00 E-value=6.1e+02 Score=26.79 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048749 188 EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD 222 (536)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 222 (536)
...+..++.+. ..++..+|+.+++++...|..|.
T Consensus 248 ~~~iF~L~dai-~~~~~~~al~ll~~Ll~~g~~~~ 281 (614)
T PRK14971 248 YDYYFRLTDAL-LAGKVSDSLLLFDEILNKGFDGS 281 (614)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 33444444444 34688889999988888876654
No 474
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=32.98 E-value=1.9e+02 Score=20.91 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH
Q 048749 469 YTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPR 502 (536)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 502 (536)
...++..+.. |+++++...+++++..|+.++..
T Consensus 8 i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~~I 40 (89)
T PF08542_consen 8 IEEILESCLN-GDFKEARKKLYELLVEGYSASDI 40 (89)
T ss_dssp HHHHHHHHHH-TCHHHHHHHHHHHHHTT--HHHH
T ss_pred HHHHHHHHHh-CCHHHHHHHHHHHHHcCCCHHHH
Confidence 3333333333 35555555555555555444433
No 475
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.39 E-value=7e+02 Score=27.27 Aligned_cols=47 Identities=4% Similarity=0.003 Sum_probs=25.8
Q ss_pred HHHHccCCHHHHHHHHHhCCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHH
Q 048749 164 DVLGRARRFVELIQVFDEMPDLVNEKTYGIL----LNRYAAAHMVEEAIGVFDRRK 215 (536)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~ 215 (536)
..|...|+++.|++.-..- +...+.+ ...|.+.+++..|-++|.++.
T Consensus 366 k~yLd~g~y~kAL~~ar~~-----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR-----PDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHhcchHHHHHHhccCC-----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 3455667777776654332 1223332 334556667777777776663
No 476
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=32.25 E-value=2.6e+02 Score=25.25 Aligned_cols=29 Identities=28% Similarity=0.264 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048749 291 DSVTYATFVNALTKKGKLGTALRLFQAMW 319 (536)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 319 (536)
+..+...+..++...|+...+.++++.+.
T Consensus 131 ~~Y~lAl~aYAL~la~~~~~~~~~~~~L~ 159 (246)
T PF07678_consen 131 DPYTLALVAYALALAGDSPQASKLLNKLN 159 (246)
T ss_dssp SHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 44444444444444555555555555544
No 477
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=31.66 E-value=2.1e+02 Score=21.00 Aligned_cols=66 Identities=11% Similarity=0.005 Sum_probs=35.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHH
Q 048749 276 AKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEAL 347 (536)
Q Consensus 276 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 347 (536)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. +| +..|..++.++...|.-.-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 4455556665552 222233333222235566777777777766 42 235666677776666655443
No 478
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=31.19 E-value=5.2e+02 Score=25.41 Aligned_cols=63 Identities=13% Similarity=0.089 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048749 240 EVAETFFESEKNEFGYDIKTMNIILNGWCV---LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNAL 302 (536)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 302 (536)
+...+++.+-...+..+-..+..+|+++-| -.+.+.|+-++-.|++.|..|--..-..++-++
T Consensus 229 ~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~As 294 (436)
T COG2256 229 ELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIAS 294 (436)
T ss_pred HHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 333344444222333444445555555543 456677777777777777545444433333333
No 479
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=30.92 E-value=2.7e+02 Score=22.09 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 449 KVRHTWEEMEKKGMGPDQ-RSYTVMIHGLYDKGRLEDALSYFH 490 (536)
Q Consensus 449 ~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~ 490 (536)
...++|..|...|+.-.. ..|.....-+-..|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456677777776664433 335555556667777777777765
No 480
>PRK14700 recombination factor protein RarA; Provisional
Probab=30.76 E-value=4.5e+02 Score=24.60 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=25.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048749 269 VLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGK 307 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 307 (536)
+-.|.+.|+-++..|++.|..|.-..-..++-++-.-|.
T Consensus 138 RGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 138 RGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred hcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 345677777777888887766666555555555555553
No 481
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.75 E-value=5e+02 Score=25.05 Aligned_cols=127 Identities=9% Similarity=-0.000 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC--CHHHHHHHH
Q 048749 154 PGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGE-LD--DLSAFQNLL 230 (536)
Q Consensus 154 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~--~~~~~~~ll 230 (536)
|++.+.-.++.-+....+-+....+=+.+. .+.+.+-.++.+.+++...+.+.......=. .+ =......++
T Consensus 73 ~~~~~li~~~~~FV~~~n~eqlr~as~~f~-----~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~~l~ 147 (422)
T KOG2582|consen 73 PDPETLIELLNDFVDENNGEQLRLASEIFF-----PLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHADLL 147 (422)
T ss_pred CCHHHHHHHHHHHHHhcChHHHhhHHHHHH-----HHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHHHHH
Confidence 455555556665555444333222211111 1445556666666665554444333322110 11 112233455
Q ss_pred HHHHhcCCHHHHHHHHHH-h------cCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHH
Q 048749 231 LWLCRYKHVEVAETFFES-E------KNEFGYDIKTMNIILNG--WCVLGNVYEAKRFWKDIIK 285 (536)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~-~------~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~ 285 (536)
..|.+.+++..+...++. + ....+|.......+=.+ |....+++.|+.++...+-
T Consensus 148 ~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 148 QLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred HHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 556666666555544433 1 11223332222111111 3456788999988887763
No 482
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.59 E-value=2.8e+02 Score=23.40 Aligned_cols=66 Identities=6% Similarity=0.044 Sum_probs=45.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048749 418 VLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLED 484 (536)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 484 (536)
+.+.+.+.|+..+..-. .++..+...++.-.|.++++.+.+.+...+..|.---+..+.+.|-+.+
T Consensus 13 ~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 13 AEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 34445567777665544 4455555556677889999999888777777776666677888876644
No 483
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.56 E-value=1.9e+02 Score=20.73 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC
Q 048749 124 LIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRAR 170 (536)
Q Consensus 124 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 170 (536)
+++..|.+|. --++|+++.+|+.+++ ..+...-+.|=.-....|
T Consensus 36 tV~D~L~rCd-T~EEAlEii~yleKrG--Ei~~E~A~~L~~~~~~kg 79 (98)
T COG4003 36 TVIDFLRRCD-TEEEALEIINYLEKRG--EITPEMAKALRVTLVHKG 79 (98)
T ss_pred hHHHHHHHhC-cHHHHHHHHHHHHHhC--CCCHHHHHHHHhhHHHHH
No 484
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.02 E-value=5.2e+02 Score=25.04 Aligned_cols=31 Identities=6% Similarity=-0.002 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELD 221 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 221 (536)
....++.+. ..++..+++.+++++.+.|..|
T Consensus 248 ~i~~l~~ai-~~~~~~~~~~~~~~l~~~g~~~ 278 (363)
T PRK14961 248 QSFLLTDAL-LKKDSKKTMLLLNKISSIGIEW 278 (363)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCH
Confidence 333444443 3366677777777776665443
No 485
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=29.91 E-value=5.7e+02 Score=25.46 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=47.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048749 434 YNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMV 498 (536)
Q Consensus 434 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 498 (536)
...|+.-|...|++.+|...++++--- +--....+.+++.+.-+.|+-+.-+.++++.-+.|..
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI 575 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI 575 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce
Confidence 346788888999999999887765321 1124567889999999999888888888887776653
No 486
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=29.76 E-value=2.3e+02 Score=20.85 Aligned_cols=55 Identities=16% Similarity=0.108 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhhhhhhh
Q 048749 465 DQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVP-EPRTGILVNDMNIKLKERGE 519 (536)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~~~~~~ 519 (536)
|...--.+...+...|++++|++.+-++++..-.. +......++.++...|..+.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 55666677778888899999888888888764433 44557778888888777663
No 487
>PLN03025 replication factor C subunit; Provisional
Probab=29.42 E-value=4.9e+02 Score=24.58 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHH
Q 048749 465 DQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGIL 506 (536)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 506 (536)
.......++..+. .+++++|+..+.+|+..|..|......+
T Consensus 224 ~~~~i~~~i~~~~-~~~~~~a~~~l~~ll~~g~~~~~Il~~l 264 (319)
T PLN03025 224 HPLHVKNIVRNCL-KGKFDDACDGLKQLYDLGYSPTDIITTL 264 (319)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3334444555543 4788888888888888888877555443
No 488
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=29.31 E-value=8.5e+02 Score=27.29 Aligned_cols=314 Identities=11% Similarity=0.094 Sum_probs=157.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcC---CHHHHHHHHHHhcCCCCCCHHHHHH
Q 048749 193 ILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQN-------LLLWLCRYK---HVEVAETFFESEKNEFGYDIKTMNI 262 (536)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-------ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~ 262 (536)
++=+++.....+++|+..|+++... ++--...|.+ ++.-....| .+++|..-|+.+..+.. -+--|--
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 557 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVG-APLEYLG 557 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC-CchHHHh
Confidence 3446788888999999999988753 2222223322 233233344 46778888888755422 2222444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH--------------------HHHHHHHHHHHhc---CCHhHHHHHHHHH
Q 048749 263 ILNGWCVLGNVYEAKRFWKDIIKS-KCEPDS--------------------VTYATFVNALTKK---GKLGTALRLFQAM 318 (536)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~--------------------~~~~~li~~~~~~---g~~~~a~~~~~~m 318 (536)
-.-.|-+.|++++-.+.+.-..+. .-.|-. .+|.-|+-+.... -...+-.++|+.+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEIL 637 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 444577888888777766655443 223321 1222222222211 1122334555555
Q ss_pred HHcCCCCCH--------hh-----HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 319 WEKGRKPDV--------VT-----CNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYL 385 (536)
Q Consensus 319 ~~~g~~p~~--------~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~ 385 (536)
... .+|.. .+ +..++... .|..---.++|+...+. +|..+..-+.-..+..|.++-+.+..
T Consensus 638 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (932)
T PRK13184 638 YHK-QQATLFCQLDKTPLQFRSSKMELFLSFW--SGFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFS 711 (932)
T ss_pred Hhh-ccCCceeeccCchhhhhhhhHHHHHHHH--hcCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 443 22221 11 11122111 24444455566666543 34455555555567788888777766
Q ss_pred HHHHhcCCCC-CCcH---------HHHHHHHHhcCCCChHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChhHHHHH
Q 048749 386 DEMEQKNGSC-LPNE---------ITFNYLLKSLKKPEEVPWVLERMERNGCKMS--TDTYNVILKLYVNWDCEDKVRHT 453 (536)
Q Consensus 386 ~~m~~~~~~~-~p~~---------~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~ 453 (536)
..+.+.-... .|.. ..|-.-+.++...+..+++++..... +|. ...+..++.-..-.++.+....+
T Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (932)
T PRK13184 712 DILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT--DPTLILYAFDLFAIQALLDEEGESIIQL 789 (932)
T ss_pred HHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC--CHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 6665332101 1111 11223344555666677776644332 222 23333444444445555555555
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhh
Q 048749 454 WEEMEKKGMGPDQ--RSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKE 516 (536)
Q Consensus 454 ~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~ 516 (536)
.+.+...-.+... .....-|.+|.-..++++|-++++..-..-..-|..-...|..++...-+
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 (932)
T PRK13184 790 LQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTE 854 (932)
T ss_pred HHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcC
Confidence 5555544222211 22345567788888888888888766554444444444444444444333
No 489
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=28.92 E-value=7.1e+02 Score=26.26 Aligned_cols=17 Identities=18% Similarity=0.018 Sum_probs=11.6
Q ss_pred cCCHHHHHHHHHHHHhc
Q 048749 375 IKRMETVYEYLDEMEQK 391 (536)
Q Consensus 375 ~~~~~~A~~~~~~m~~~ 391 (536)
.+++..|...+..|...
T Consensus 374 ~~~~~~a~~~l~~~~~~ 390 (608)
T PF10345_consen 374 RGDWSKATQELEFMRQL 390 (608)
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 56677777777776654
No 490
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=28.62 E-value=6.6e+02 Score=25.79 Aligned_cols=58 Identities=17% Similarity=0.132 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKEFGE-LDDLSAFQNLLLWLCRYKHVEVAETFFES 248 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 248 (536)
..-++.-|.+.+++++|+.++..|.=.-. .---...+.+++.+.+..--++.+..++.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~ 469 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEA 469 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 34577789999999999999987753211 01112333444555555434444444444
No 491
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.43 E-value=7.7e+02 Score=26.50 Aligned_cols=170 Identities=13% Similarity=0.169 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH----------hhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC
Q 048749 294 TYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV----------VTCNCIIDALCFKKRIPEALEVLREMKNR--GCLPN 361 (536)
Q Consensus 294 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~ 361 (536)
+...++-.|....+++...++.+.+.+. ||. +.|.-.++---+-|+-++|+.+.-.+.+. .+.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 3344444555555666666666655553 211 11222223233445566666655555332 23344
Q ss_pred HHH-----HHH--HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcH---HHHHHHHHhcCCC-ChHHHHHHHHHHCCCCCC
Q 048749 362 VTT-----YNS--LIKHLCKIKRMETVYEYLDEMEQKNGSCLPNE---ITFNYLLKSLKKP-EEVPWVLERMERNGCKMS 430 (536)
Q Consensus 362 ~~~-----~~~--li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~---~~~~~ll~~~~~~-~~a~~~~~~~~~~~~~~~ 430 (536)
... |-- +-..|...+..+.|.++|++.-+. .|+. ..+..++.+-|+. +...+ +..-|
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev----eP~~~sGIN~atLL~aaG~~Fens~E----lq~Ig---- 347 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV----EPLEYSGINLATLLRAAGEHFENSLE----LQQIG---- 347 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc----CchhhccccHHHHHHHhhhhccchHH----HHHHH----
Confidence 322 111 112344566778888999888774 3544 3466666665543 22222 11111
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 431 TDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 431 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
. .|-..+++.|.+++..+.|+-.. .+.+-.-.+++.+|.+..+.|.+.
T Consensus 348 -m---kLn~LlgrKG~leklq~YWdV~~-------------y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 348 -M---KLNSLLGRKGALEKLQEYWDVAT-------------YFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred -H---HHHHHhhccchHHHHHHHHhHHH-------------hhhhhhhccCHHHHHHHHHHHhcc
Confidence 1 12233456777666666654322 223334456777777777766654
No 492
>PRK10941 hypothetical protein; Provisional
Probab=28.28 E-value=4.8e+02 Score=24.06 Aligned_cols=58 Identities=16% Similarity=-0.150 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 228 NLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIK 285 (536)
Q Consensus 228 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 285 (536)
.+-.+|.+.++++.|..+.+.+..-.+.+..-+.--.-.|.+.|.+..|..=++..++
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4445555666666666666654433344555555555555666666666655555544
No 493
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.20 E-value=7.6e+02 Score=26.39 Aligned_cols=33 Identities=6% Similarity=-0.207 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD 222 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 222 (536)
.....++.+.. .++...++++++++.+.|..++
T Consensus 246 e~IfdLldAI~-k~d~~~al~~L~el~~~g~d~~ 278 (702)
T PRK14960 246 TIIYDLILAVH-QNQREKVSQLLLQFRYQALDVS 278 (702)
T ss_pred HHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCHH
Confidence 34444555543 3778888888888888876544
No 494
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=27.86 E-value=3.8e+02 Score=23.32 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHH
Q 048749 258 KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSV-TYATFVNALTKKGKLGTA 311 (536)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a 311 (536)
...+.+++.+.-.|+++.|.++|.-+++.. +.|.. .|..=+..+.+.+.-...
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~ 95 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSE 95 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchH
Confidence 456778888888888888888888887654 33432 344444445444444333
No 495
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.80 E-value=3.4e+02 Score=22.15 Aligned_cols=35 Identities=9% Similarity=0.108 Sum_probs=15.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048749 446 CEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKG 480 (536)
Q Consensus 446 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 480 (536)
..-.|.++++.+.+.+...+..|.---+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555554443334444333334444433
No 496
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=27.64 E-value=2.5e+02 Score=20.56 Aligned_cols=62 Identities=10% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 325 PDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEM 388 (536)
Q Consensus 325 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 388 (536)
|...+|..-+..-.....-+. ++|+-....|+..|...|..+++...-.=-.+...++++.|
T Consensus 8 ~~~~~~k~~~~rk~~Ls~eE~--EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLSAEEV--ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred ChHHHHHHHHHHHhccCHHHH--HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
No 497
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.39 E-value=6.9e+02 Score=25.62 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH
Q 048749 469 YTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPR 502 (536)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 502 (536)
...+++++ ..++.++|+.++++++..|..|...
T Consensus 245 if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~~I 277 (504)
T PRK14963 245 LRGIAAAL-AQGDAAEALSGAAQLYRDGFAARTL 277 (504)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 34445554 4477788888888888777665543
No 498
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=27.38 E-value=5.5e+02 Score=28.30 Aligned_cols=92 Identities=11% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHH---------------HHHHHHHhc
Q 048749 415 VPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYT---------------VMIHGLYDK 479 (536)
Q Consensus 415 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---------------~li~~~~~~ 479 (536)
...+-+.+.+.|+..+...+..++.... |++..++..++++. .+...+..++. .+++++. .
T Consensus 185 ~~~L~~il~~EGv~id~eal~lLa~~sg--GdlR~Al~eLEKLi-a~~~~~~IT~e~V~allg~~~~~~I~~lidAL~-~ 260 (824)
T PRK07764 185 RGYLERICAQEGVPVEPGVLPLVIRAGG--GSVRDSLSVLDQLL-AGAGPEGVTYERAVALLGVTDSALIDEAVDALA-A 260 (824)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHH-hhcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHH-c
Q ss_pred CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 048749 480 GRLEDALSYFHEMRLKGMVPEPRTGILVNDM 510 (536)
Q Consensus 480 g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~ 510 (536)
|+...++.+++++.+.|..|......++..+
T Consensus 261 ~D~a~al~~l~~Li~~G~dp~~~L~~LL~~f 291 (824)
T PRK07764 261 GDGAALFGTVDRVIEAGHDPRRFAEDLLERL 291 (824)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
No 499
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=27.28 E-value=5e+02 Score=23.95 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHCCCCCcHHHHH
Q 048749 481 RLEDALSYFHEMRLKGMVPEPRTGI 505 (536)
Q Consensus 481 ~~~~A~~~~~~m~~~g~~p~~~t~~ 505 (536)
+...|...+......|.........
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Confidence 6666777777777666655554444
No 500
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.27 E-value=2.4e+02 Score=20.25 Aligned_cols=44 Identities=16% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048749 262 IILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKG 306 (536)
Q Consensus 262 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 306 (536)
++++.+.++.-.++|+++++.|.+.| ..+...-+.|=......|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L~~~~~~kg 79 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKALRVTLVHKG 79 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHhhHHHHH
Done!