Query 048749
Match_columns 536
No_of_seqs 677 out of 2946
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 22:19:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.3E-37 2.8E-41 317.2 42.3 446 71-530 64-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.2E-33 2.8E-37 287.1 38.3 387 133-531 97-546 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.2E-31 4E-36 267.7 25.8 206 276-515 9-224 (501)
4 4g26_A Pentatricopeptide repea 100.0 5.8E-31 2E-35 262.7 24.6 195 188-409 26-220 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-25 3.9E-30 220.3 43.2 368 133-513 12-385 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-24 3.8E-29 213.3 41.1 361 162-535 5-371 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 7.9E-22 2.7E-26 196.9 39.8 332 139-510 11-372 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 2.1E-21 7.1E-26 193.9 37.9 317 132-492 38-406 (450)
9 2gw1_A Mitochondrial precursor 99.9 3.2E-21 1.1E-25 195.9 35.0 351 132-494 18-477 (514)
10 3ieg_A DNAJ homolog subfamily 99.9 9.5E-19 3.2E-23 168.6 40.8 323 155-515 2-354 (359)
11 3fp2_A TPR repeat-containing p 99.9 8.9E-19 3E-23 178.9 36.7 350 131-495 36-491 (537)
12 2gw1_A Mitochondrial precursor 99.9 3E-19 1E-23 181.2 33.0 362 156-530 6-478 (514)
13 3fp2_A TPR repeat-containing p 99.9 2.3E-18 8E-23 175.8 38.4 161 226-390 246-406 (537)
14 3ieg_A DNAJ homolog subfamily 99.9 9.7E-18 3.3E-22 161.5 37.9 313 187-530 2-335 (359)
15 3hym_B Cell division cycle pro 99.8 4.8E-18 1.7E-22 161.7 30.3 197 154-353 20-219 (330)
16 3hym_B Cell division cycle pro 99.8 1.1E-17 3.6E-22 159.3 30.9 275 113-392 15-300 (330)
17 2xm6_A Protein corresponding t 99.8 3.3E-15 1.1E-19 150.6 46.2 337 133-498 56-435 (490)
18 1fch_A Peroxisomal targeting s 99.8 8.4E-18 2.9E-22 162.8 25.4 285 168-490 37-354 (368)
19 1fch_A Peroxisomal targeting s 99.8 1E-17 3.5E-22 162.2 25.6 296 134-456 39-355 (368)
20 2xm6_A Protein corresponding t 99.8 6.5E-15 2.2E-19 148.4 46.2 240 134-391 93-360 (490)
21 4eqf_A PEX5-related protein; a 99.8 7.1E-18 2.4E-22 163.3 22.8 266 187-491 64-352 (365)
22 3spa_A Mtrpol, DNA-directed RN 99.8 3.5E-19 1.2E-23 182.7 10.7 121 254-374 124-248 (1134)
23 3spa_A Mtrpol, DNA-directed RN 99.8 3.2E-19 1.1E-23 183.0 10.3 152 290-445 125-286 (1134)
24 1b89_A Protein (clathrin heavy 99.8 5.8E-18 2E-22 161.3 16.1 279 134-453 17-304 (449)
25 3cv0_A Peroxisome targeting si 99.8 1.4E-16 4.9E-21 151.2 26.0 261 193-492 26-312 (327)
26 4eqf_A PEX5-related protein; a 99.8 5.7E-17 2E-21 156.9 23.2 276 155-456 64-352 (365)
27 3cv0_A Peroxisome targeting si 99.8 2E-16 6.9E-21 150.2 25.2 275 157-458 22-313 (327)
28 2ooe_A Cleavage stimulation fa 99.7 4.2E-14 1.4E-18 143.9 42.3 386 133-528 25-490 (530)
29 3mkr_A Coatomer subunit epsilo 99.7 1.6E-15 5.4E-20 141.2 28.7 272 198-523 9-287 (291)
30 1b89_A Protein (clathrin heavy 99.7 2.8E-17 9.5E-22 156.6 14.5 306 167-518 14-329 (449)
31 3mkr_A Coatomer subunit epsilo 99.7 4.8E-15 1.6E-19 138.0 27.8 247 133-392 12-265 (291)
32 2ooe_A Cleavage stimulation fa 99.7 1E-13 3.4E-18 141.1 39.2 375 143-530 2-454 (530)
33 4g1t_A Interferon-induced prot 99.7 4.7E-14 1.6E-18 141.4 35.5 340 153-530 48-459 (472)
34 1xi4_A Clathrin heavy chain; a 99.7 2E-12 6.8E-17 137.4 41.1 301 156-490 1105-1440(1630)
35 1xi4_A Clathrin heavy chain; a 99.7 4E-12 1.4E-16 135.2 42.5 363 117-526 980-1380(1630)
36 3uq3_A Heat shock protein STI1 99.6 1.4E-13 4.9E-18 125.5 25.6 223 189-494 6-235 (258)
37 4g1t_A Interferon-induced prot 99.6 1.7E-13 6E-18 137.2 28.1 361 124-502 55-467 (472)
38 2pl2_A Hypothetical conserved 99.6 3.2E-14 1.1E-18 126.4 20.0 207 155-389 4-212 (217)
39 2pl2_A Hypothetical conserved 99.6 5.1E-14 1.7E-18 125.1 21.3 197 220-423 2-212 (217)
40 3uq3_A Heat shock protein STI1 99.6 1.5E-13 5E-18 125.5 24.5 224 156-391 5-236 (258)
41 2ho1_A Type 4 fimbrial biogene 99.6 4.4E-13 1.5E-17 122.0 26.2 198 156-356 37-238 (252)
42 2vq2_A PILW, putative fimbrial 99.6 5.8E-13 2E-17 118.7 26.3 203 188-392 8-212 (225)
43 2ho1_A Type 4 fimbrial biogene 99.6 4.6E-13 1.6E-17 121.9 25.5 202 188-392 37-239 (252)
44 2vq2_A PILW, putative fimbrial 99.6 4.1E-13 1.4E-17 119.6 24.6 201 154-356 6-211 (225)
45 1ouv_A Conserved hypothetical 99.6 4.1E-12 1.4E-16 117.2 31.3 225 154-392 4-252 (273)
46 1ouv_A Conserved hypothetical 99.6 6.1E-12 2.1E-16 116.0 31.4 125 187-320 5-142 (273)
47 2q7f_A YRRB protein; TPR, prot 99.6 1.5E-13 5.1E-18 124.2 20.0 198 155-355 22-221 (243)
48 3u4t_A TPR repeat-containing p 99.6 4.5E-13 1.5E-17 123.5 22.8 233 158-392 5-251 (272)
49 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.9E-14 2.4E-18 129.1 16.8 244 134-385 19-269 (275)
50 2q7f_A YRRB protein; TPR, prot 99.6 3.9E-13 1.3E-17 121.5 21.1 203 186-392 21-223 (243)
51 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.9E-14 2E-18 129.6 15.6 150 202-354 19-171 (275)
52 3u4t_A TPR repeat-containing p 99.5 1.8E-12 6.1E-17 119.4 24.3 235 129-368 12-261 (272)
53 2h6f_A Protein farnesyltransfe 99.5 1.4E-12 4.6E-17 125.6 24.0 232 156-392 97-349 (382)
54 2h6f_A Protein farnesyltransfe 99.5 5.1E-12 1.8E-16 121.6 27.5 240 187-503 96-354 (382)
55 3sf4_A G-protein-signaling mod 99.5 1.4E-12 4.8E-17 127.6 21.5 300 189-519 10-365 (406)
56 2ond_A Cleavage stimulation fa 99.5 3.3E-11 1.1E-15 113.2 28.5 218 173-392 33-271 (308)
57 3e4b_A ALGK; tetratricopeptide 99.5 3.1E-11 1.1E-15 119.7 29.6 366 133-526 16-417 (452)
58 4a1s_A PINS, partner of inscut 99.5 2.9E-12 9.9E-17 125.8 21.7 209 257-495 126-372 (411)
59 3ro2_A PINS homolog, G-protein 99.5 7E-12 2.4E-16 118.9 21.8 275 190-495 7-332 (338)
60 3sf4_A G-protein-signaling mod 99.4 1.9E-12 6.6E-17 126.6 17.5 300 153-482 6-363 (406)
61 4a1s_A PINS, partner of inscut 99.4 2.9E-12 1E-16 125.8 18.8 271 161-460 53-372 (411)
62 2ond_A Cleavage stimulation fa 99.4 2.9E-11 1E-15 113.6 24.8 215 137-356 33-270 (308)
63 3vtx_A MAMA; tetratricopeptide 99.4 1.6E-11 5.5E-16 105.7 21.0 163 156-320 5-169 (184)
64 3e4b_A ALGK; tetratricopeptide 99.4 6.8E-12 2.3E-16 124.5 18.9 346 161-531 8-388 (452)
65 3vtx_A MAMA; tetratricopeptide 99.4 4.5E-11 1.5E-15 102.8 21.7 166 187-355 4-169 (184)
66 3ro2_A PINS homolog, G-protein 99.4 6.8E-12 2.3E-16 119.0 17.4 260 131-392 16-333 (338)
67 4abn_A Tetratricopeptide repea 99.4 1E-11 3.6E-16 123.9 19.3 210 135-350 83-315 (474)
68 3ulq_A Response regulator aspa 99.4 3.4E-11 1.2E-15 117.0 21.5 233 229-494 109-367 (383)
69 4abn_A Tetratricopeptide repea 99.4 2.3E-11 7.8E-16 121.5 20.6 217 239-492 84-318 (474)
70 4e6h_A MRNA 3'-END-processing 99.4 7.7E-09 2.6E-13 106.3 37.7 416 107-530 53-570 (679)
71 3as5_A MAMA; tetratricopeptide 99.3 1.8E-10 6.1E-15 98.8 21.5 163 156-320 8-172 (186)
72 4e6h_A MRNA 3'-END-processing 99.3 1.8E-08 6.2E-13 103.5 39.3 412 90-509 65-582 (679)
73 3nf1_A KLC 1, kinesin light ch 99.3 4.1E-11 1.4E-15 112.4 17.6 237 154-391 25-307 (311)
74 3nf1_A KLC 1, kinesin light ch 99.3 4.8E-11 1.6E-15 111.9 18.1 247 254-529 24-306 (311)
75 3as5_A MAMA; tetratricopeptide 99.3 5.7E-10 1.9E-14 95.6 22.2 166 224-392 9-174 (186)
76 3q15_A PSP28, response regulat 99.3 4E-10 1.4E-14 109.2 22.9 232 229-494 107-364 (378)
77 3ulq_A Response regulator aspa 99.3 2.4E-10 8.1E-15 111.0 20.5 234 263-529 109-367 (383)
78 1hz4_A MALT regulatory protein 99.3 1.8E-09 6.2E-14 104.3 25.8 271 193-494 19-321 (373)
79 1hz4_A MALT regulatory protein 99.3 4.8E-09 1.7E-13 101.2 27.9 265 126-391 20-322 (373)
80 4gyw_A UDP-N-acetylglucosamine 99.2 2.3E-10 7.8E-15 119.0 19.2 166 153-320 6-173 (723)
81 4gyw_A UDP-N-acetylglucosamine 99.2 6.9E-10 2.4E-14 115.4 20.8 167 186-355 7-173 (723)
82 4i17_A Hypothetical protein; T 99.2 5.6E-09 1.9E-13 93.1 21.5 195 187-392 6-210 (228)
83 3q15_A PSP28, response regulat 99.1 6.1E-09 2.1E-13 100.8 22.6 227 161-391 106-365 (378)
84 4i17_A Hypothetical protein; T 99.1 4.7E-09 1.6E-13 93.6 19.9 194 154-357 5-210 (228)
85 3edt_B KLC 2, kinesin light ch 99.1 9.9E-10 3.4E-14 101.2 15.8 223 168-391 13-281 (283)
86 3edt_B KLC 2, kinesin light ch 99.1 6.4E-10 2.2E-14 102.5 14.0 232 270-528 14-279 (283)
87 2fo7_A Synthetic consensus TPR 99.1 1.2E-08 4E-13 82.0 17.3 129 190-320 3-131 (136)
88 3mv2_B Coatomer subunit epsilo 99.0 1.1E-07 3.6E-12 87.0 24.3 206 168-391 25-240 (310)
89 2fo7_A Synthetic consensus TPR 99.0 9.7E-09 3.3E-13 82.5 15.9 129 157-286 2-132 (136)
90 3mv2_B Coatomer subunit epsilo 99.0 2.2E-07 7.5E-12 84.9 24.5 185 276-503 85-288 (310)
91 1qqe_A Vesicular transport pro 99.0 2.2E-08 7.5E-13 93.0 17.8 206 171-390 32-268 (292)
92 3qky_A Outer membrane assembly 99.0 2.3E-08 8E-13 91.1 17.1 95 155-249 14-123 (261)
93 1qqe_A Vesicular transport pro 99.0 3.2E-08 1.1E-12 91.9 18.1 203 135-355 32-268 (292)
94 3urz_A Uncharacterized protein 98.9 4.9E-08 1.7E-12 85.6 17.6 110 191-302 7-132 (208)
95 3qky_A Outer membrane assembly 98.9 1.3E-07 4.4E-12 86.1 20.9 187 186-392 13-225 (261)
96 3urz_A Uncharacterized protein 98.9 4E-08 1.4E-12 86.1 16.0 124 194-320 60-185 (208)
97 3dra_A Protein farnesyltransfe 98.9 1.4E-06 4.7E-11 80.4 26.4 218 135-391 48-287 (306)
98 2r5s_A Uncharacterized protein 98.9 2.9E-08 9.9E-13 84.4 13.9 159 158-318 8-170 (176)
99 2pzi_A Probable serine/threoni 98.9 1.7E-08 5.9E-13 105.3 14.3 170 167-341 402-582 (681)
100 2pzi_A Probable serine/threoni 98.9 3.6E-08 1.2E-12 102.9 16.1 173 199-377 402-583 (681)
101 2uy1_A Cleavage stimulation fa 98.8 4.4E-06 1.5E-10 83.2 29.8 338 134-494 28-412 (493)
102 2r5s_A Uncharacterized protein 98.8 9.9E-08 3.4E-12 81.1 15.4 158 192-352 10-169 (176)
103 3qou_A Protein YBBN; thioredox 98.8 6E-08 2E-12 89.7 14.9 161 155-317 116-280 (287)
104 3rjv_A Putative SEL1 repeat pr 98.8 3.1E-07 1.1E-11 80.6 18.5 175 138-322 4-198 (212)
105 3qou_A Protein YBBN; thioredox 98.8 2.2E-07 7.7E-12 85.8 18.4 177 174-354 104-282 (287)
106 3dra_A Protein farnesyltransfe 98.8 1.7E-06 5.8E-11 79.8 23.9 207 110-319 57-285 (306)
107 2vsy_A XCC0866; transferase, g 98.8 1.2E-07 4E-12 97.1 17.8 161 134-298 3-168 (568)
108 4ga2_A E3 SUMO-protein ligase 98.8 1.5E-08 5.3E-13 83.6 9.2 135 133-270 10-147 (150)
109 2vsy_A XCC0866; transferase, g 98.8 7.4E-08 2.5E-12 98.6 16.0 149 170-320 3-156 (568)
110 2yhc_A BAMD, UPF0169 lipoprote 98.8 3.4E-07 1.2E-11 81.2 18.3 182 156-357 4-214 (225)
111 4ga2_A E3 SUMO-protein ligase 98.8 1.7E-08 5.9E-13 83.2 9.1 110 165-275 6-117 (150)
112 3rjv_A Putative SEL1 repeat pr 98.8 9.2E-07 3.1E-11 77.6 20.8 178 275-497 4-199 (212)
113 2yhc_A BAMD, UPF0169 lipoprote 98.8 6.2E-07 2.1E-11 79.5 19.7 187 187-392 3-214 (225)
114 2ifu_A Gamma-SNAP; membrane fu 98.7 3.4E-07 1.2E-11 85.6 15.1 225 134-384 5-254 (307)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2E-06 6.7E-11 75.3 19.2 128 158-287 8-151 (213)
116 3q7a_A Farnesyltransferase alp 98.6 2.5E-05 8.6E-10 72.8 26.0 227 134-391 68-331 (349)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.4E-06 8.3E-11 74.7 18.4 127 191-321 9-150 (213)
118 2uy1_A Cleavage stimulation fa 98.6 0.0002 6.9E-09 71.2 34.0 357 135-527 10-410 (493)
119 3u3w_A Transcriptional activat 98.6 7.9E-06 2.7E-10 75.6 22.5 170 260-459 78-265 (293)
120 2qfc_A PLCR protein; TPR, HTH, 98.6 6.7E-06 2.3E-10 76.1 21.8 126 229-354 121-264 (293)
121 1a17_A Serine/threonine protei 98.6 1.7E-06 5.8E-11 72.2 16.1 126 190-317 15-142 (166)
122 3q7a_A Farnesyltransferase alp 98.6 3.8E-05 1.3E-09 71.6 25.6 183 157-377 55-257 (349)
123 1na0_A Designed protein CTPR3; 98.6 2.5E-06 8.4E-11 67.0 15.4 96 189-285 10-105 (125)
124 3u3w_A Transcriptional activat 98.6 5.5E-06 1.9E-10 76.7 20.1 129 262-390 120-265 (293)
125 1a17_A Serine/threonine protei 98.6 1.7E-06 5.7E-11 72.2 14.9 128 156-284 13-144 (166)
126 2ifu_A Gamma-SNAP; membrane fu 98.6 1.2E-06 4E-11 81.9 15.0 197 169-392 4-224 (307)
127 2c2l_A CHIP, carboxy terminus 98.5 7.5E-07 2.5E-11 82.0 13.1 196 186-391 2-199 (281)
128 1na0_A Designed protein CTPR3; 98.5 2.3E-06 7.8E-11 67.2 14.0 113 156-269 9-123 (125)
129 2qfc_A PLCR protein; TPR, HTH, 98.5 1.1E-05 3.9E-10 74.5 20.8 129 262-390 120-265 (293)
130 3gw4_A Uncharacterized protein 98.5 1E-06 3.5E-11 76.4 12.9 155 236-390 5-175 (203)
131 2vyi_A SGTA protein; chaperone 98.5 2.8E-06 9.5E-11 67.4 14.4 115 190-306 14-128 (131)
132 4gco_A Protein STI-1; structur 98.5 3.2E-06 1.1E-10 67.0 14.4 94 191-285 16-109 (126)
133 4f3v_A ESX-1 secretion system 98.5 2.6E-06 8.9E-11 76.8 15.3 124 230-355 109-236 (282)
134 4f3v_A ESX-1 secretion system 98.5 5.7E-06 1.9E-10 74.6 17.3 193 133-331 19-245 (282)
135 4gco_A Protein STI-1; structur 98.5 2.3E-06 7.9E-11 67.9 13.0 108 156-264 13-122 (126)
136 3gw4_A Uncharacterized protein 98.5 1.6E-06 5.4E-11 75.2 12.7 155 200-355 4-175 (203)
137 2lni_A Stress-induced-phosphop 98.5 2.4E-06 8.2E-11 68.1 12.8 24 295-318 87-110 (133)
138 2vyi_A SGTA protein; chaperone 98.5 2.5E-06 8.6E-11 67.6 12.6 118 155-273 11-130 (131)
139 2lni_A Stress-induced-phosphop 98.4 6.3E-06 2.2E-10 65.6 14.7 119 255-376 14-132 (133)
140 2e2e_A Formate-dependent nitri 98.4 1.9E-06 6.6E-11 72.9 12.0 117 202-320 24-143 (177)
141 3gyz_A Chaperone protein IPGC; 98.4 6.3E-07 2.1E-11 73.6 8.3 100 186-286 34-133 (151)
142 2c2l_A CHIP, carboxy terminus 98.4 6.7E-07 2.3E-11 82.3 9.4 192 155-355 3-198 (281)
143 2e2e_A Formate-dependent nitri 98.4 9.1E-07 3.1E-11 75.0 9.4 119 168-287 22-145 (177)
144 2fbn_A 70 kDa peptidylprolyl i 98.4 6.2E-07 2.1E-11 77.7 7.6 164 163-347 11-176 (198)
145 1p5q_A FKBP52, FK506-binding p 98.4 9.3E-06 3.2E-10 76.7 16.0 141 170-311 127-283 (336)
146 3gyz_A Chaperone protein IPGC; 98.4 5E-06 1.7E-10 68.1 12.2 99 256-356 35-133 (151)
147 2vgx_A Chaperone SYCD; alterna 98.3 3.9E-06 1.3E-10 68.7 11.0 98 256-355 20-117 (148)
148 1p5q_A FKBP52, FK506-binding p 98.3 8.1E-06 2.8E-10 77.1 14.6 129 155-284 146-292 (336)
149 1elw_A TPR1-domain of HOP; HOP 98.3 1.9E-05 6.5E-10 61.0 14.6 97 189-286 5-101 (118)
150 2vgx_A Chaperone SYCD; alterna 98.3 1.9E-06 6.4E-11 70.6 8.8 62 257-319 55-116 (148)
151 1elw_A TPR1-domain of HOP; HOP 98.3 2.3E-05 7.7E-10 60.6 14.7 94 226-320 7-100 (118)
152 2fbn_A 70 kDa peptidylprolyl i 98.3 2.1E-06 7.3E-11 74.2 8.4 155 234-390 15-185 (198)
153 3upv_A Heat shock protein STI1 98.3 1.1E-05 3.7E-10 63.8 11.8 95 190-285 6-100 (126)
154 2xcb_A PCRH, regulatory protei 98.2 6.5E-06 2.2E-10 66.8 10.3 95 190-285 20-114 (142)
155 3dss_A Geranylgeranyl transfer 98.2 0.0012 3.9E-08 61.3 26.5 230 241-503 48-310 (331)
156 3dss_A Geranylgeranyl transfer 98.2 0.00031 1E-08 65.2 22.4 165 135-303 45-238 (331)
157 3upv_A Heat shock protein STI1 98.2 2.8E-05 9.5E-10 61.4 13.5 95 225-320 6-100 (126)
158 2kck_A TPR repeat; tetratricop 98.2 1.2E-05 4.2E-10 61.6 10.7 93 191-284 9-104 (112)
159 2xcb_A PCRH, regulatory protei 98.2 2E-05 6.9E-10 63.8 12.3 97 257-355 18-114 (142)
160 1elr_A TPR2A-domain of HOP; HO 98.2 1.9E-05 6.5E-10 62.4 11.8 97 189-286 5-108 (131)
161 2kck_A TPR repeat; tetratricop 98.2 2.4E-05 8.2E-10 59.8 12.0 93 260-354 9-104 (112)
162 3q49_B STIP1 homology and U bo 98.2 4.5E-05 1.6E-09 61.0 13.6 97 187-284 8-104 (137)
163 2dba_A Smooth muscle cell asso 98.1 7.6E-05 2.6E-09 60.5 15.0 98 187-286 27-128 (148)
164 3sz7_A HSC70 cochaperone (SGT) 98.1 3.6E-05 1.2E-09 64.1 13.2 97 189-286 12-108 (164)
165 4gcn_A Protein STI-1; structur 98.1 5.8E-05 2E-09 59.7 13.5 96 259-355 10-111 (127)
166 3sz7_A HSC70 cochaperone (SGT) 98.1 4.2E-05 1.4E-09 63.7 13.3 97 223-320 11-107 (164)
167 1elr_A TPR2A-domain of HOP; HO 98.1 2.3E-05 7.9E-10 61.9 11.2 109 259-370 6-120 (131)
168 4gcn_A Protein STI-1; structur 98.1 6E-05 2.1E-09 59.6 13.1 100 292-392 8-113 (127)
169 2dba_A Smooth muscle cell asso 98.1 6.8E-05 2.3E-09 60.7 13.9 109 154-263 26-139 (148)
170 3q49_B STIP1 homology and U bo 98.1 5.9E-05 2E-09 60.3 13.3 98 256-355 8-105 (137)
171 4b4t_Q 26S proteasome regulato 98.1 0.00017 5.8E-09 70.6 19.1 195 196-390 12-244 (434)
172 3ro3_A PINS homolog, G-protein 98.0 5.2E-05 1.8E-09 62.4 11.2 133 259-391 11-158 (164)
173 1hxi_A PEX5, peroxisome target 98.0 5.5E-05 1.9E-09 59.2 10.5 51 165-215 26-78 (121)
174 1hxi_A PEX5, peroxisome target 98.0 5.5E-05 1.9E-09 59.3 10.4 90 194-284 23-112 (121)
175 3ro3_A PINS homolog, G-protein 98.0 4.7E-05 1.6E-09 62.6 10.6 26 190-215 11-36 (164)
176 4b4t_Q 26S proteasome regulato 97.9 0.00022 7.6E-09 69.8 16.4 187 134-320 18-244 (434)
177 2xev_A YBGF; tetratricopeptide 97.9 0.00032 1.1E-08 55.2 14.3 92 194-286 8-105 (129)
178 2xev_A YBGF; tetratricopeptide 97.9 0.00015 5.1E-09 57.2 12.2 87 162-249 8-102 (129)
179 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00012 4E-09 72.3 13.7 155 171-347 249-405 (457)
180 1ihg_A Cyclophilin 40; ppiase 97.9 0.00017 5.7E-09 69.0 13.8 137 190-347 225-361 (370)
181 3k9i_A BH0479 protein; putativ 97.9 2.9E-05 9.9E-10 60.4 7.1 85 306-391 4-90 (117)
182 1wao_1 Serine/threonine protei 97.9 3.6E-05 1.2E-09 76.4 9.4 119 196-316 14-134 (477)
183 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00015 5.1E-09 71.6 13.3 122 155-277 267-405 (457)
184 1wao_1 Serine/threonine protei 97.8 3.2E-05 1.1E-09 76.8 7.6 116 165-281 15-134 (477)
185 3k9i_A BH0479 protein; putativ 97.8 2.7E-05 9.2E-10 60.6 5.1 85 201-285 3-89 (117)
186 1dce_A Protein (RAB geranylger 97.8 0.0011 3.8E-08 67.0 18.1 171 134-308 43-242 (567)
187 3rkv_A Putative peptidylprolyl 97.7 0.00039 1.3E-08 57.5 12.2 115 189-321 12-126 (162)
188 3rkv_A Putative peptidylprolyl 97.7 0.00042 1.4E-08 57.3 12.3 66 291-357 62-127 (162)
189 1ihg_A Cyclophilin 40; ppiase 97.7 0.00034 1.2E-08 66.8 13.1 138 226-384 226-363 (370)
190 1dce_A Protein (RAB geranylger 97.7 0.0012 4.2E-08 66.7 17.3 173 204-380 45-244 (567)
191 1klx_A Cysteine rich protein B 97.6 0.00074 2.5E-08 54.1 12.0 112 270-392 8-127 (138)
192 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00015 5E-09 68.5 9.0 146 157-320 180-327 (338)
193 2l6j_A TPR repeat-containing p 97.6 6.3E-05 2.1E-09 57.5 5.2 62 156-217 4-67 (111)
194 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00027 9.1E-09 66.7 9.6 96 294-391 232-328 (338)
195 1klx_A Cysteine rich protein B 97.5 0.0025 8.7E-08 50.9 14.0 64 430-496 56-127 (138)
196 2hr2_A Hypothetical protein; a 97.5 0.0012 4.2E-08 53.5 11.8 28 190-217 13-40 (159)
197 2l6j_A TPR repeat-containing p 97.5 0.00044 1.5E-08 52.6 8.7 95 430-527 3-104 (111)
198 3n71_A Histone lysine methyltr 97.5 0.00052 1.8E-08 67.7 10.9 125 267-391 319-464 (490)
199 3n71_A Histone lysine methyltr 97.5 0.00038 1.3E-08 68.7 9.6 50 166-215 319-378 (490)
200 2hr2_A Hypothetical protein; a 97.4 0.0016 5.4E-08 52.9 11.2 61 294-354 59-129 (159)
201 1na3_A Designed protein CTPR2; 97.4 0.0016 5.6E-08 47.2 9.9 61 157-217 10-72 (91)
202 2kat_A Uncharacterized protein 97.3 0.0018 6E-08 49.8 10.1 77 138-216 3-81 (115)
203 1na3_A Designed protein CTPR2; 97.3 0.0022 7.4E-08 46.5 10.1 58 190-248 11-68 (91)
204 2kat_A Uncharacterized protein 97.3 0.003 1E-07 48.4 10.9 60 257-317 19-78 (115)
205 3ma5_A Tetratricopeptide repea 97.1 0.0022 7.5E-08 47.9 8.7 65 255-320 5-69 (100)
206 3ma5_A Tetratricopeptide repea 97.0 0.0036 1.2E-07 46.7 9.0 87 428-515 4-91 (100)
207 1zu2_A Mitochondrial import re 97.0 0.0023 8E-08 51.8 7.8 93 135-231 17-132 (158)
208 1zu2_A Mitochondrial import re 97.0 0.0013 4.6E-08 53.2 6.2 103 200-330 14-127 (158)
209 1wy6_A Hypothetical protein ST 96.9 0.09 3.1E-06 40.5 15.9 148 191-359 8-157 (172)
210 3mkq_A Coatomer beta'-subunit; 96.8 0.084 2.9E-06 56.0 20.4 154 165-353 608-762 (814)
211 3ly7_A Transcriptional activat 96.8 0.13 4.5E-06 47.9 18.5 65 254-320 274-338 (372)
212 1wy6_A Hypothetical protein ST 96.7 0.12 4E-06 39.8 14.2 140 338-498 18-157 (172)
213 3ly7_A Transcriptional activat 96.6 0.059 2E-06 50.2 15.3 74 324-403 274-347 (372)
214 3mkq_A Coatomer beta'-subunit; 96.3 0.28 9.5E-06 52.0 20.7 98 268-389 610-708 (814)
215 3qwp_A SET and MYND domain-con 96.1 0.042 1.4E-06 53.2 11.8 99 369-494 294-399 (429)
216 3qww_A SET and MYND domain-con 96.0 0.015 5E-07 56.4 8.1 87 304-390 310-410 (433)
217 3qww_A SET and MYND domain-con 96.0 0.02 6.8E-07 55.5 9.0 81 134-214 312-408 (433)
218 2kc7_A BFR218_protein; tetratr 96.0 0.023 7.8E-07 41.8 7.4 54 266-320 9-63 (99)
219 3qwp_A SET and MYND domain-con 96.0 0.031 1.1E-06 54.1 10.0 92 299-390 294-399 (429)
220 3mkq_B Coatomer subunit alpha; 95.8 0.49 1.7E-05 38.8 15.0 43 235-282 17-59 (177)
221 3bee_A Putative YFRE protein; 95.8 0.2 6.7E-06 36.4 11.5 49 343-392 25-73 (93)
222 1pc2_A Mitochondria fission pr 95.8 0.12 4.1E-06 41.3 10.9 88 417-508 19-111 (152)
223 3u64_A Protein TP_0956; tetrat 95.5 0.89 3.1E-05 40.6 16.5 93 273-367 179-282 (301)
224 3bee_A Putative YFRE protein; 95.5 0.087 3E-06 38.4 8.5 66 153-218 3-73 (93)
225 2kc7_A BFR218_protein; tetratr 95.4 0.096 3.3E-06 38.2 8.9 55 232-286 9-64 (99)
226 3mkq_B Coatomer subunit alpha; 95.2 0.58 2E-05 38.3 13.4 98 198-315 15-112 (177)
227 2v5f_A Prolyl 4-hydroxylase su 94.9 0.33 1.1E-05 36.0 10.4 73 429-503 3-81 (104)
228 1pc2_A Mitochondria fission pr 94.5 0.22 7.6E-06 39.7 8.9 79 311-391 17-100 (152)
229 2v5f_A Prolyl 4-hydroxylase su 94.2 0.54 1.9E-05 34.8 10.4 28 328-355 47-74 (104)
230 4h7y_A Dual specificity protei 93.9 1.8 6.1E-05 34.2 12.5 100 291-392 12-124 (161)
231 4h7y_A Dual specificity protei 93.0 1 3.6E-05 35.5 9.9 55 306-361 74-128 (161)
232 4b4t_P 26S proteasome regulato 92.9 7 0.00024 37.8 20.5 95 296-390 141-246 (445)
233 2ff4_A Probable regulatory pro 92.7 0.73 2.5E-05 43.8 10.8 80 433-513 173-257 (388)
234 3lpz_A GET4 (YOR164C homolog); 92.5 6.3 0.00022 36.0 20.4 166 158-354 37-214 (336)
235 3u64_A Protein TP_0956; tetrat 92.4 1 3.5E-05 40.3 10.4 96 308-405 179-283 (301)
236 1nzn_A CGI-135 protein, fissio 92.3 2 7E-05 32.8 10.6 85 201-286 14-103 (126)
237 1v54_E Cytochrome C oxidase po 92.1 0.47 1.6E-05 34.3 6.3 63 203-265 25-87 (109)
238 2ff4_A Probable regulatory pro 91.0 1.1 3.8E-05 42.6 9.9 69 260-329 174-247 (388)
239 1nzn_A CGI-135 protein, fissio 90.5 2.3 7.8E-05 32.6 9.3 82 309-392 18-104 (126)
240 4gns_B Protein CSD3, chitin bi 90.5 3.6 0.00012 42.5 13.5 55 334-389 344-398 (754)
241 4b4t_P 26S proteasome regulato 89.7 15 0.00051 35.4 19.5 187 134-320 30-246 (445)
242 4gns_B Protein CSD3, chitin bi 89.4 5.4 0.00018 41.2 13.9 55 437-493 343-398 (754)
243 2y69_E Cytochrome C oxidase su 89.1 1.1 3.9E-05 34.3 6.3 62 204-265 69-130 (152)
244 1qsa_A Protein (soluble lytic 88.3 23 0.00079 35.7 21.2 316 159-494 10-347 (618)
245 3lvg_A Clathrin heavy chain 1; 88.0 4.1E-05 1.4E-09 72.6 -22.4 203 155-374 53-275 (624)
246 3o48_A Mitochondria fission 1 88.0 7.2 0.00024 30.0 10.3 82 426-509 35-119 (134)
247 1v54_E Cytochrome C oxidase po 87.5 6 0.0002 28.7 8.9 47 345-391 28-74 (109)
248 4fhn_B Nucleoporin NUP120; pro 87.4 8.8 0.0003 42.3 15.1 190 193-389 817-1048(1139)
249 4fhn_B Nucleoporin NUP120; pro 87.3 16 0.00053 40.3 16.9 142 229-377 818-986 (1139)
250 1y8m_A FIS1; mitochondria, unk 83.9 14 0.00046 28.9 12.4 80 426-507 34-116 (144)
251 2y69_E Cytochrome C oxidase su 83.2 10 0.00036 29.1 8.9 47 345-391 71-117 (152)
252 2wpv_A GET4, UPF0363 protein Y 80.7 33 0.0011 31.1 20.6 166 158-354 35-215 (312)
253 3o48_A Mitochondria fission 1 79.2 20 0.00067 27.6 9.7 21 300-320 86-106 (134)
254 3txn_A 26S proteasome regulato 78.4 45 0.0015 31.3 20.1 161 158-319 21-208 (394)
255 1zbp_A Hypothetical protein VP 78.2 8.8 0.0003 33.7 8.2 71 336-407 6-76 (273)
256 1wdy_A 2-5A-dependent ribonucl 75.9 6.5 0.00022 34.8 7.3 13 416-428 199-211 (285)
257 3lvg_A Clathrin heavy chain 1; 75.9 0.029 1E-06 53.6 -8.5 180 134-340 97-276 (624)
258 4b4t_R RPN7, 26S proteasome re 75.2 25 0.00085 33.7 11.5 94 259-354 133-235 (429)
259 2uwj_G Type III export protein 74.6 21 0.00073 25.7 8.9 87 202-296 20-106 (115)
260 2p58_C Putative type III secre 74.3 22 0.00075 25.7 9.6 87 202-296 21-107 (116)
261 3hra_A Ankyrin repeat family p 74.3 6 0.00021 32.9 6.3 77 167-248 13-94 (201)
262 2uwj_G Type III export protein 73.9 22 0.00076 25.6 10.0 87 134-227 20-106 (115)
263 2p58_C Putative type III secre 73.3 23 0.0008 25.6 10.8 87 134-227 21-107 (116)
264 1wdy_A 2-5A-dependent ribonucl 73.1 11 0.00037 33.3 8.0 21 162-182 8-28 (285)
265 3ltm_A Alpha-REP4; protein eng 72.3 41 0.0014 27.9 18.1 17 326-342 156-172 (211)
266 1bpo_A Protein (clathrin); cla 72.0 30 0.001 33.0 10.5 126 118-248 327-454 (494)
267 3ffl_A Anaphase-promoting comp 70.4 19 0.00066 28.9 7.7 120 260-392 23-152 (167)
268 3eiq_C Programmed cell death p 70.1 69 0.0023 29.6 12.7 85 433-518 219-305 (358)
269 4b4t_R RPN7, 26S proteasome re 70.0 17 0.00057 34.9 8.9 57 402-458 137-195 (429)
270 1zbp_A Hypothetical protein VP 69.4 11 0.00036 33.2 6.5 50 235-284 9-58 (273)
271 3esl_A Checkpoint serine/threo 66.2 53 0.0018 27.4 9.8 55 341-397 93-148 (202)
272 3txn_A 26S proteasome regulato 64.6 94 0.0032 29.2 24.0 288 226-531 22-344 (394)
273 3ffl_A Anaphase-promoting comp 64.4 35 0.0012 27.4 8.1 59 157-215 21-90 (167)
274 3ltm_A Alpha-REP4; protein eng 62.9 65 0.0022 26.7 19.1 170 154-339 31-200 (211)
275 4a1g_A Mitotic checkpoint seri 62.8 55 0.0019 25.8 9.1 56 448-503 82-138 (152)
276 3esl_A Checkpoint serine/threo 62.4 67 0.0023 26.7 11.6 60 444-503 92-152 (202)
277 3utm_A Tankyrase-1; tankyrase, 62.4 36 0.0012 30.9 9.5 79 414-501 225-308 (351)
278 1y8m_A FIS1; mitochondria, unk 59.9 60 0.002 25.3 12.1 20 336-355 86-105 (144)
279 2nsz_A Programmed cell death p 59.8 56 0.0019 24.9 9.9 85 433-518 9-95 (129)
280 3eiq_C Programmed cell death p 59.7 34 0.0011 31.7 8.3 64 468-532 219-284 (358)
281 2ion_A PDCD4, programmed cell 59.2 56 0.0019 25.8 8.6 84 433-517 11-96 (152)
282 3rjo_A Endoplasmic reticulum a 58.6 1.2E+02 0.0043 28.6 15.1 156 329-495 199-369 (419)
283 4g8k_A 2-5A-dependent ribonucl 58.1 37 0.0013 30.8 8.7 21 161-181 27-47 (337)
284 2wpv_A GET4, UPF0363 protein Y 56.7 1.1E+02 0.0039 27.5 19.7 25 326-350 133-157 (312)
285 2qx5_A Nucleoporin NIC96; mRNA 56.0 1.1E+02 0.0037 31.1 11.9 42 158-200 155-198 (661)
286 2d2s_A Exocyst complex compone 55.2 79 0.0027 27.1 9.5 27 256-282 90-116 (235)
287 2wvi_A Mitotic checkpoint seri 54.5 82 0.0028 25.2 10.8 59 448-506 77-136 (164)
288 4a1g_A Mitotic checkpoint seri 54.5 78 0.0027 25.0 9.0 71 395-465 64-135 (152)
289 2wvi_A Mitotic checkpoint seri 54.1 53 0.0018 26.3 7.6 54 413-466 77-131 (164)
290 3lpz_A GET4 (YOR164C homolog); 52.5 1.4E+02 0.0047 27.2 21.8 167 190-390 37-215 (336)
291 4aez_C MAD3, mitotic spindle c 51.6 73 0.0025 27.0 8.3 57 448-504 131-188 (223)
292 4g8k_A 2-5A-dependent ribonucl 47.7 60 0.002 29.4 8.3 86 410-503 213-303 (337)
293 3ltj_A Alpharep-4; protein eng 47.4 1.1E+02 0.0039 24.8 19.6 18 221-238 88-105 (201)
294 3aji_A 26S proteasome non-ATPa 47.1 53 0.0018 27.5 7.4 20 163-182 10-29 (231)
295 2d2s_A Exocyst complex compone 46.9 1.4E+02 0.0047 25.6 9.9 89 299-390 25-119 (235)
296 2xdt_A Endoplasmic reticulum a 46.7 2.9E+02 0.0099 29.3 14.2 27 433-459 752-778 (897)
297 1wgl_A TOLL-interacting protei 45.7 52 0.0018 21.1 5.1 48 107-155 10-57 (59)
298 3pvs_A Replication-associated 45.7 90 0.0031 29.9 9.3 118 413-532 168-326 (447)
299 4aez_C MAD3, mitotic spindle c 45.4 1.2E+02 0.004 25.7 8.7 68 397-464 115-183 (223)
300 3eu9_A Huntingtin-interacting 44.8 30 0.001 29.2 5.4 15 167-181 17-31 (240)
301 3ctd_A Putative ATPase, AAA fa 43.9 1.4E+02 0.0049 24.9 10.4 38 269-306 47-84 (213)
302 3ctd_A Putative ATPase, AAA fa 43.2 78 0.0027 26.5 7.1 35 444-478 48-82 (213)
303 3kea_A K1L; tropism, ANK repea 43.0 49 0.0017 29.2 6.7 18 164-181 67-84 (285)
304 3bge_A Predicted ATPase; struc 42.9 70 0.0024 26.4 6.7 35 444-478 20-54 (201)
305 1bpo_A Protein (clathrin); cla 42.2 2.4E+02 0.0082 27.1 11.4 42 170-211 343-384 (494)
306 3eu9_A Huntingtin-interacting 41.7 32 0.0011 29.1 5.0 22 162-183 45-66 (240)
307 4b4t_S RPN3, 26S proteasome re 41.0 78 0.0027 30.9 7.8 25 190-214 233-257 (523)
308 1k1a_A B-cell lymphoma 3-encod 40.7 77 0.0026 26.7 7.5 15 234-248 87-101 (241)
309 4fke_A Aminopeptidase N; zinc 39.8 3E+02 0.01 29.2 13.0 155 161-320 691-859 (909)
310 1qsa_A Protein (soluble lytic 39.7 3.1E+02 0.01 27.6 33.8 48 439-489 389-436 (618)
311 3kea_A K1L; tropism, ANK repea 38.9 48 0.0017 29.3 5.9 13 234-246 70-82 (285)
312 1dm5_A Annexin XII E105K mutan 38.6 2.2E+02 0.0076 25.6 13.5 74 107-183 19-98 (315)
313 2zu6_B Programmed cell death p 38.5 2.2E+02 0.0075 25.6 12.5 83 434-517 169-253 (307)
314 1k1a_A B-cell lymphoma 3-encod 37.7 96 0.0033 26.0 7.6 88 195-283 13-102 (241)
315 2ijq_A Hypothetical protein; s 37.7 1.5E+02 0.0053 23.5 8.0 62 433-495 35-104 (161)
316 3bu8_A Telomeric repeat-bindin 37.6 1.5E+02 0.0051 24.9 7.8 21 439-459 122-142 (235)
317 2ion_A PDCD4, programmed cell 37.3 1.5E+02 0.0051 23.3 9.0 21 229-249 15-35 (152)
318 2keb_A DNA polymerase subunit 36.6 1.2E+02 0.004 21.8 6.5 32 449-480 27-58 (101)
319 2nsz_A Programmed cell death p 33.3 1.6E+02 0.0054 22.4 10.4 20 230-249 14-33 (129)
320 3utm_A Tankyrase-1; tankyrase, 32.7 2.7E+02 0.0091 24.8 10.9 14 167-180 66-79 (351)
321 3v31_A Ankyrin repeat family A 32.6 1.5E+02 0.0052 23.0 7.5 16 337-352 142-157 (167)
322 3b7b_A Euchromatic histone-lys 32.4 40 0.0014 28.5 4.1 17 373-389 218-234 (237)
323 1vg5_A RSGI RUH-014, rhomboid 31.3 1E+02 0.0034 20.8 4.9 35 107-143 30-64 (73)
324 3jxi_A Vanilloid receptor-rela 30.8 13 0.00044 32.4 0.6 53 196-248 10-71 (260)
325 2r9g_A AAA ATPase, central reg 30.7 2.3E+02 0.0079 23.5 10.7 18 270-287 27-44 (204)
326 2ii2_A Alpha-11 giardin; helix 30.6 3E+02 0.01 24.7 9.8 22 107-132 11-32 (310)
327 3eyy_A Putative iron uptake re 29.7 1E+02 0.0035 23.9 5.7 63 107-172 4-68 (145)
328 3se6_A Endoplasmic reticulum a 29.7 5.5E+02 0.019 27.5 14.9 160 366-529 752-919 (967)
329 4ady_A RPN2, 26S proteasome re 29.2 5.5E+02 0.019 27.4 27.8 349 124-517 345-722 (963)
330 3bu8_A Telomeric repeat-bindin 27.9 2.7E+02 0.0093 23.4 7.9 23 229-251 120-142 (235)
331 3f3f_C Nucleoporin NUP85; stru 27.4 2.1E+02 0.0072 28.2 8.4 72 238-311 496-568 (570)
332 2g3q_A Protein YBL047C; endocy 27.1 97 0.0033 18.0 4.9 34 108-143 6-39 (43)
333 2ijq_A Hypothetical protein; s 26.7 2.4E+02 0.0083 22.4 8.0 53 339-391 44-104 (161)
334 2f6m_A Suppressor protein STP2 26.7 1.4E+02 0.0047 19.6 4.8 46 190-236 4-49 (65)
335 2rfa_A Transient receptor pote 26.5 1.4E+02 0.0046 24.9 6.6 84 301-389 127-221 (232)
336 1ify_A HHR23A, UV excision rep 26.2 1.1E+02 0.0039 18.4 4.6 35 107-143 9-43 (49)
337 1ug3_A EIF4GI, eukaryotic prot 26.0 1.5E+02 0.0052 27.0 7.0 25 330-354 14-38 (339)
338 3rjo_A Endoplasmic reticulum a 25.5 4.2E+02 0.014 24.8 19.3 28 135-166 125-152 (419)
339 2fu4_A Ferric uptake regulatio 25.4 1.6E+02 0.0054 19.8 7.8 32 448-479 34-65 (83)
340 2r9g_A AAA ATPase, central reg 25.0 2.9E+02 0.01 22.8 9.9 62 297-359 16-85 (204)
341 2rg8_A Programmed cell death p 24.9 67 0.0023 25.8 3.8 92 433-527 12-109 (165)
342 2xig_A Ferric uptake regulatio 24.3 2.5E+02 0.0086 21.8 8.1 61 316-377 16-76 (150)
343 1s6c_A KV4 potassium channel-i 24.1 2.6E+02 0.009 22.0 11.7 22 294-315 158-179 (183)
344 2fe3_A Peroxide operon regulat 24.0 2.5E+02 0.0085 21.6 7.9 61 316-377 11-71 (145)
345 2rfa_A Transient receptor pote 23.8 1.8E+02 0.006 24.2 6.8 184 163-354 7-221 (232)
346 4fke_A Aminopeptidase N; zinc 23.7 6.7E+02 0.023 26.5 16.7 88 193-284 691-785 (909)
347 3twr_A Tankyrase-2; ankyrin re 23.3 1.1E+02 0.0039 23.7 5.1 14 234-247 16-29 (165)
348 1oyz_A Hypothetical protein YI 23.0 3.6E+02 0.012 23.1 23.3 122 255-390 140-262 (280)
349 3b7b_A Euchromatic histone-lys 22.7 1.1E+02 0.0038 25.6 5.3 117 230-355 115-235 (237)
350 1s6c_A KV4 potassium channel-i 22.6 2.8E+02 0.0097 21.8 7.8 23 259-281 158-180 (183)
351 4gq2_M Nucleoporin NUP120; bet 22.1 7.4E+02 0.025 26.4 14.9 119 134-271 824-950 (950)
352 2jul_A Calsenilin; EF-hand, ca 21.8 3.7E+02 0.013 22.8 11.2 11 173-183 129-139 (256)
353 3eyy_A Putative iron uptake re 21.6 2.5E+02 0.0084 21.7 6.5 60 316-377 8-67 (145)
354 3t8k_A Uncharacterized protein 21.4 1.6E+02 0.0055 23.8 5.7 53 274-326 91-148 (186)
355 2f8y_A Notch homolog 1, transl 21.4 1.7E+02 0.0056 24.1 6.0 15 233-247 65-79 (223)
356 3bge_A Predicted ATPase; struc 21.3 3.5E+02 0.012 22.3 9.9 34 269-302 19-52 (201)
357 2keb_A DNA polymerase subunit 21.3 2.3E+02 0.0079 20.3 6.9 57 414-472 27-88 (101)
358 2jul_A Calsenilin; EF-hand, ca 21.0 3.4E+02 0.012 23.1 8.2 66 118-183 107-175 (256)
359 2fe3_A Peroxide operon regulat 20.8 2.9E+02 0.0099 21.2 8.8 60 421-481 12-71 (145)
360 3c1d_A Protein ORAA, regulator 20.7 3.1E+02 0.011 21.5 10.6 48 415-464 49-96 (159)
361 2w57_A Ferric uptake regulatio 20.5 2.9E+02 0.0098 21.5 6.7 62 314-376 4-66 (150)
362 4b4t_S RPN3, 26S proteasome re 20.4 6E+02 0.021 24.7 11.2 27 223-249 231-257 (523)
363 2bwb_A Ubiquitin-like protein 20.3 1.5E+02 0.0051 17.7 5.0 33 110-143 11-43 (46)
364 3hra_A Ankyrin repeat family p 20.1 1.3E+02 0.0044 24.3 4.9 81 198-280 12-92 (201)
365 3i5p_A Nucleoporin NUP170; hel 20.1 6.2E+02 0.021 24.7 13.1 32 471-502 222-253 (525)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.3e-37 Score=317.22 Aligned_cols=446 Identities=8% Similarity=-0.028 Sum_probs=353.5
Q ss_pred hhhcCC-CCccccccCCChHHHHHHHHHHhhCCCCC-hhHHHHHHhhc-CCCCCHHHHHHH--HHhccCCHHHHHHHHHH
Q 048749 71 HSLANS-DEKSEFQRYPGDEIAINVQNILKTCSVST-KGEIEKALNQC-ELTLTDDLIVNV--INRYRFDWEAAYTFFKW 145 (536)
Q Consensus 71 ~~~~~~-~~~~~f~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~l~~~-~~~~~~~~~~~~--l~~~~~~~~~a~~~~~~ 145 (536)
..++.. .++..|+.+|.+ .+..|..++..+...+ ..++...+++. +..++...+..+ .....|+++.|+.+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSLS-REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp ------------------C-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccCccCCCCCccccchHH-HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 334443 556677777755 4666777776544332 23333333322 223343333222 22234799999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-C-----------------CCCHHHHHHHHHHHHhcCCHHHH
Q 048749 146 VSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-D-----------------LVNEKTYGILLNRYAAAHMVEEA 207 (536)
Q Consensus 146 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-----------------~~~~~~~~~li~~~~~~g~~~~A 207 (536)
+... +++..+++.++.+|.+.|++++|+++|+++. . +.+..+|+.++.+|.+.|++++|
T Consensus 143 ~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 143 EDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp TCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred Hhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 8653 5789999999999999999999999999654 2 12588999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHH--------------------------------------HHHHHhcCCHHHHHHHHHHh
Q 048749 208 IGVFDRRKEFGELDDLSAFQNL--------------------------------------LLWLCRYKHVEVAETFFESE 249 (536)
Q Consensus 208 ~~~~~~m~~~g~~~~~~~~~~l--------------------------------------l~~~~~~~~~~~a~~~~~~~ 249 (536)
+++|++|.+.+ +.+...+..+ +..|.+.|++++|.++|+++
T Consensus 220 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 220 KECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 99999999875 3344443333 44566788999999999997
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhh
Q 048749 250 KNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVT 329 (536)
Q Consensus 250 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 329 (536)
... +++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++++++.+. .+.+..+
T Consensus 299 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ 375 (597)
T 2xpi_A 299 NGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVT 375 (597)
T ss_dssp TTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHH
T ss_pred hcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHH
Confidence 654 6899999999999999999999999999999876 457889999999999999999999999999875 3457889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc
Q 048749 330 CNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL 409 (536)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~ 409 (536)
++.++.+|.+.|++++|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|+++.+.+ ..+..+|..+...|
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF---QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHH
Confidence 99999999999999999999999987532 368899999999999999999999999999875 24667777777766
Q ss_pred ---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcC
Q 048749 410 ---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK----GMGPD--QRSYTVMIHGLYDKG 480 (536)
Q Consensus 410 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g 480 (536)
++.++|.++++.+.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 66778889999998764 457899999999999999999999999999876 77788 789999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 481 RLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 481 ~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
++++|.++|+++.+.+ ..+..++..+..++.+.|+.++|.+.+.++.+.
T Consensus 531 ~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999864 336788999999999999999999999998654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-33 Score=287.13 Aligned_cols=387 Identities=9% Similarity=-0.049 Sum_probs=336.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHMVEEAIGVF 211 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 211 (536)
.++++.|+.+|+.+... .|+..++..++.+|.+.|++++|..+|+++. .+++..+|+.++.+|.+.|++++|+++|
T Consensus 97 ~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 173 (597)
T 2xpi_A 97 QQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLL 173 (597)
T ss_dssp TTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 47999999999999864 5688999999999999999999999999997 5688999999999999999999999999
Q ss_pred HHHH-Hc--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHH-------------
Q 048749 212 DRRK-EF--------------GELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNII------------- 263 (536)
Q Consensus 212 ~~m~-~~--------------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l------------- 263 (536)
+++. .. |.+++..+|+.++.+|.+.|++++|.++|+++....+.+...+..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 253 (597)
T 2xpi_A 174 GETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWD 253 (597)
T ss_dssp CSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHH
T ss_pred hccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHH
Confidence 8532 21 3344688999999999999999999999999754334444444433
Q ss_pred -------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 048749 264 -------------------------LNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAM 318 (536)
Q Consensus 264 -------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 318 (536)
+..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|.++|+++
T Consensus 254 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 331 (597)
T 2xpi_A 254 LVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKI 331 (597)
T ss_dssp HHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55677899999999999998865 589999999999999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCc
Q 048749 319 WEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPN 398 (536)
Q Consensus 319 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~ 398 (536)
.+.+. .+..++..++.+|.+.|++++|.++++++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.. ..+
T Consensus 332 ~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~ 406 (597)
T 2xpi_A 332 LEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD---PQF 406 (597)
T ss_dssp HHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC
T ss_pred HHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCC
Confidence 98753 378899999999999999999999999998653 3478999999999999999999999999998864 235
Q ss_pred HHHHHHHHHhc---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048749 399 EITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHG 475 (536)
Q Consensus 399 ~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 475 (536)
..+|+.+...+ ++.++|.++++.+.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVV 484 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 67888877776 66778889999988865 4578999999999999999999999999999863 3478999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCc--HHHHHHHHHHHHhhhhhhhhhHHHHHhhhcc
Q 048749 476 LYDKGRLEDALSYFHEMRLK----GMVPE--PRTGILVNDMNIKLKERGEQGKKVIKLTSLG 531 (536)
Q Consensus 476 ~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~g 531 (536)
|.+.|++++|.++|++|.+. +..|+ ..++..+..++.+.|+.++|.+.+.++.+.+
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 99999999999999999887 77888 6789999999999999999999999986653
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.2e-31 Score=267.72 Aligned_cols=206 Identities=12% Similarity=0.155 Sum_probs=137.0
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC---------hHH
Q 048749 276 AKRFWKDIIKSKCEPDS-VTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKR---------IPE 345 (536)
Q Consensus 276 A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~ 345 (536)
+..+.+++.+.+..... ..++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 33444445444433322 34555666666666666666666666666666666666666666665443 566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHC
Q 048749 346 ALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERN 425 (536)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~ 425 (536)
|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g--------------------------------- 135 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG--------------------------------- 135 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------------------------
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------------
Confidence 77777777777777777777777777777777777777777776554
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHH
Q 048749 426 GCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGI 505 (536)
Q Consensus 426 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 505 (536)
+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|+.|+..|+.
T Consensus 136 -~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~ 214 (501)
T 4g26_A 136 -IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFD 214 (501)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHH
T ss_pred -CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 4566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhhh
Q 048749 506 LVNDMNIKLK 515 (536)
Q Consensus 506 ~l~~~~~~~~ 515 (536)
.+...+...+
T Consensus 215 ~l~~~F~s~~ 224 (501)
T 4g26_A 215 MIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHSHH
T ss_pred HHHHHHhcCc
Confidence 7777776543
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=5.8e-31 Score=262.70 Aligned_cols=195 Identities=17% Similarity=0.187 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 048749 188 EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGW 267 (536)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 267 (536)
...++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+..+.+
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------------------------- 80 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------------------------- 80 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------------------------
Confidence 3457777888888888888888888888888888888888888887766542110
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHH
Q 048749 268 CVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEAL 347 (536)
Q Consensus 268 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 347 (536)
.+.+.++.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.
T Consensus 81 ~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 81 SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHH
Confidence 12234566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc
Q 048749 348 EVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL 409 (536)
Q Consensus 348 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~ 409 (536)
++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.+ ..|+..||+.++..+
T Consensus 161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g--~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV--RQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SSBCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC--CCcCHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666 666666666666655
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.1e-25 Score=220.28 Aligned_cols=368 Identities=13% Similarity=0.046 Sum_probs=302.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
.|+++.|++.+..+.+.. +.+...+..+...+.+.|++++|...++... .+.+..+|..+...+.+.|++++|++.
T Consensus 12 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 479999999999988764 5567788888899999999999999998877 777889999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEP 290 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 290 (536)
|+++.+.. +.+..+|..+..++.+.|++++|...|+++....+.+...+..+...+...|++++|.+.|+++.+.. +-
T Consensus 90 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 167 (388)
T 1w3b_A 90 YRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PN 167 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 99998865 45567899999999999999999999998654445567788888899999999999999999998765 44
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048749 291 DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIK 370 (536)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 370 (536)
+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|++..+... .+..++..+..
T Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 245 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLAC 245 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHH
Confidence 67889999999999999999999999998863 23567888899999999999999999999877542 25788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 048749 371 HLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCE 447 (536)
Q Consensus 371 ~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 447 (536)
.|.+.|++++|.+.|+++.+..+ .+..++..+...+ ++.++|.+.++.+.+.. +.+..++..+...+.+.|++
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQP---HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCS---SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999988652 2334455444443 67778888888887753 56788899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHh
Q 048749 448 DKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEP-RTGILVNDMNIK 513 (536)
Q Consensus 448 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~ 513 (536)
++|...++++.+.. +.+..+|..+..++.+.|++++|...|+++++ +.|+. ..+..+...+..
T Consensus 322 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 322 EEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHH
Confidence 99999999988752 34577889999999999999999999999886 45653 335555544443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.1e-24 Score=213.28 Aligned_cols=361 Identities=9% Similarity=-0.041 Sum_probs=310.3
Q ss_pred HHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 048749 162 ILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHV 239 (536)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 239 (536)
+...+.+.|++++|.+.++.+. .+.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 4567788999999999999887 67778889999999999999999999999988765 67889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048749 240 EVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMW 319 (536)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 319 (536)
++|...|+++....+.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999654446677889999999999999999999999998875 3355677888889999999999999999999
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcH
Q 048749 320 EKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNE 399 (536)
Q Consensus 320 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~ 399 (536)
+.. +.+..+|..+...+.+.|++++|...|+++.+.+.. +...|..+...+...|++++|...|.+.....+ .+.
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~ 237 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP---NHA 237 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT---TCH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc---CCH
Confidence 863 335788999999999999999999999999886433 678899999999999999999999999988652 235
Q ss_pred HHHHHHHHhc---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048749 400 ITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGL 476 (536)
Q Consensus 400 ~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 476 (536)
.++..+...+ ++.++|.+.++.+.+.. +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..+|..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 5555555554 66778888999888864 4467899999999999999999999999998863 55788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhhhhhhhhhHHHHHhhhccCCCC
Q 048749 477 YDKGRLEDALSYFHEMRLKGMVP-EPRTGILVNDMNIKLKERGEQGKKVIKLTSLGLKGN 535 (536)
Q Consensus 477 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 535 (536)
.+.|++++|..+++++++. .| +..++..+...+.+.|+.++|.+.+.++.+ +.|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~ 371 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPT 371 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTT
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 9999999999999999874 45 466799999999999999999999999854 3554
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=7.9e-22 Score=196.90 Aligned_cols=332 Identities=10% Similarity=0.006 Sum_probs=257.8
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 139 AYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKE 216 (536)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (536)
+...+..+.... +.+...+..+...+.+.|++++|+.+|+++. .+.+..+|..+..++...|++++|++.|+++.+
T Consensus 11 ~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 333444444432 4567889999999999999999999999887 667888999999999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCH---HHHHHHHH------------HHHhcCCHHHHHHHHH
Q 048749 217 FGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDI---KTMNIILN------------GWCVLGNVYEAKRFWK 281 (536)
Q Consensus 217 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~------------~~~~~g~~~~A~~~~~ 281 (536)
.+ +.+..++..+..++.+.|++++|...|+.+....+.+. ..+..++. .+.+.|++++|...|+
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76 55688888999999999999999999999765545555 66666644 4888999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048749 282 DIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN 361 (536)
Q Consensus 282 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 361 (536)
++.+.. +.+..++..+..+|.+.|++++|.++|+++.+.. +.+..++..+...|...|++++|+..|+++.+.... +
T Consensus 168 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~ 244 (450)
T 2y4t_A 168 KILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-H 244 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-h
Confidence 988765 4577888889999999999999999999988752 346788888999999999999999999988765322 4
Q ss_pred HHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCC
Q 048749 362 VTTYNSL------------IKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKM 429 (536)
Q Consensus 362 ~~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~ 429 (536)
...+..+ ...|.+.|++++|.+.|.++.+.. |+...+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~--------------------------- 293 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSIAEY--------------------------- 293 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----CSSHHH---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcchHH---------------------------
Confidence 4445444 778888899999999998887754 221000
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-HHHHHHH
Q 048749 430 STDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEP-RTGILVN 508 (536)
Q Consensus 430 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~ 508 (536)
...++..+...+.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...++++++ +.|+. ..+..+.
T Consensus 294 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 03578888999999999999999999988752 34688999999999999999999999999987 45654 4455555
Q ss_pred HH
Q 048749 509 DM 510 (536)
Q Consensus 509 ~~ 510 (536)
.+
T Consensus 371 ~~ 372 (450)
T 2y4t_A 371 KA 372 (450)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.1e-21 Score=193.88 Aligned_cols=317 Identities=10% Similarity=0.034 Sum_probs=262.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 132 YRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIG 209 (536)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (536)
..|+++.|+.+|+.+.+.. +.+..+|..+..+|.+.|++++|...|+++. .+.+..+|..+...|...|++++|++
T Consensus 38 ~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 115 (450)
T 2y4t_A 38 AAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAED 115 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 3579999999999998863 5679999999999999999999999999988 67788999999999999999999999
Q ss_pred HHHHHHHcCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 210 VFDRRKEFGELDDL---SAFQNL------------LLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVY 274 (536)
Q Consensus 210 ~~~~m~~~g~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 274 (536)
.|+++.+.. +.+. ..+..+ ...+.+.|++++|...|+.+....+.+..++..+..+|.+.|+++
T Consensus 116 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (450)
T 2y4t_A 116 DFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPR 194 (450)
T ss_dssp HHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHH
Confidence 999999864 3333 555555 344889999999999999975555678999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHH------------HHHHHhcCC
Q 048749 275 EAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCI------------IDALCFKKR 342 (536)
Q Consensus 275 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l------------i~~~~~~g~ 342 (536)
+|..+|+++.+.. +.+..+|..+...|...|++++|+..|+++.+.. +.+...+..+ ...|.+.|+
T Consensus 195 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (450)
T 2y4t_A 195 KAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGR 272 (450)
T ss_dssp GGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999998765 5678999999999999999999999999998752 2234444444 788999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHH
Q 048749 343 IPEALEVLREMKNRGCLPN-----VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPW 417 (536)
Q Consensus 343 ~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~ 417 (536)
+++|...|+++.+.. |+ ...|..+...+.+.|++++|.+.++++.+..
T Consensus 273 ~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~------------------------- 325 (450)
T 2y4t_A 273 YTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME------------------------- 325 (450)
T ss_dssp HHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------------
Confidence 999999999998753 44 4578889999999999999999999987754
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHH------------HHhcC----
Q 048749 418 VLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPD-QRSYTVMIHG------------LYDKG---- 480 (536)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~------------~~~~g---- 480 (536)
+.+...|..+..+|...|++++|...++++.+. .|+ ...+..+..+ |...|
T Consensus 326 ----------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 326 ----------PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred ----------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 335778888999999999999999999999875 444 5556555532 33334
Q ss_pred -CHHHHHHHHHHH
Q 048749 481 -RLEDALSYFHEM 492 (536)
Q Consensus 481 -~~~~A~~~~~~m 492 (536)
+.+++.+.++++
T Consensus 394 ~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 394 AKKQEIIKAYRKL 406 (450)
T ss_dssp CCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 566778888763
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.2e-21 Score=195.88 Aligned_cols=351 Identities=8% Similarity=-0.035 Sum_probs=213.1
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 132 YRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIG 209 (536)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (536)
..|+++.|+..|+.+.+.. |+..+|..+..+|.+.|++++|+..|+++. .+.+..+|..+..++...|++++|+.
T Consensus 18 ~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3479999999999999864 689999999999999999999999999987 77788999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHH---------------------------------------------------------------
Q 048749 210 VFDRRKEFGELDDLSAF--------------------------------------------------------------- 226 (536)
Q Consensus 210 ~~~~m~~~g~~~~~~~~--------------------------------------------------------------- 226 (536)
.|+++.+.+ +++....
T Consensus 95 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (514)
T 2gw1_A 95 DLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173 (514)
T ss_dssp HHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCC
T ss_pred HHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCH
Confidence 999998765 2222222
Q ss_pred ----------------HHHHHHHHh---cCCHHHHHHHHHHhcC-----C--C-------CCCHHHHHHHHHHHHhcCCH
Q 048749 227 ----------------QNLLLWLCR---YKHVEVAETFFESEKN-----E--F-------GYDIKTMNIILNGWCVLGNV 273 (536)
Q Consensus 227 ----------------~~ll~~~~~---~~~~~~a~~~~~~~~~-----~--~-------~~~~~~~~~li~~~~~~g~~ 273 (536)
......+.. .|+++.|..+|+.+.. . . +.+..++..+...+...|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (514)
T 2gw1_A 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253 (514)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH
Confidence 222222222 5556666666655322 0 0 22334555555666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 274 YEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 274 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
++|...|+++.+... +..++..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++
T Consensus 254 ~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 254 LGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp HHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 666666666655432 25555556666666666666666666655542 224445555666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHH---HHhcCCCChHHHHHHHHHHCCC-CC
Q 048749 354 KNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYL---LKSLKKPEEVPWVLERMERNGC-KM 429 (536)
Q Consensus 354 ~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~l---l~~~~~~~~a~~~~~~~~~~~~-~~ 429 (536)
.+.... +...+..+...|...|++++|...++++.+..+ .+...+..+ ....++.++|...++.+.+... .+
T Consensus 331 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 331 KELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP---EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST---TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred HHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 554322 344555555666666666666666666655431 111222222 2222444555555555443210 11
Q ss_pred C----HHHHHHHHHHHHc---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 430 S----TDTYNVILKLYVN---WDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 430 ~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
+ ...+..+...|.. .|++++|...++++.+.. +.+..+|..+...|.+.|++++|...|++..+
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1 2355555666666 666666666666655542 22445555556666666666666666666555
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=9.5e-19 Score=168.61 Aligned_cols=323 Identities=11% Similarity=0.007 Sum_probs=229.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
|+..+..+...+.+.|++++|...|+++. .+.+..+|..+...+...|++++|++.|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 34556666777777777777777777665 55566677777777777777777777777776654 3455667777777
Q ss_pred HHhcCCHHHHHHHHHHhcCCCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048749 233 LCRYKHVEVAETFFESEKNEFG---YDIKTMNII------------LNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYAT 297 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 297 (536)
+...|++++|...++......+ .+...+..+ ...+...|++++|..+++++.+.. +.+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 7777777777777777544333 344444444 567778888888888888887765 456777888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-----------
Q 048749 298 FVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYN----------- 366 (536)
Q Consensus 298 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----------- 366 (536)
+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+.... +...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHH
Confidence 8888888888888888888887753 346677888888888888888888888888765322 333332
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048749 367 -SLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWD 445 (536)
Q Consensus 367 -~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 445 (536)
.+...+.+.|++++|.+.++++.+.. |+...+ ....+..+...+...|
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~---------------------------~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTE----PSVAEY---------------------------TVRSKERICHCFSKDE 286 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC----CSSHHH---------------------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHH---------------------------HHHHHHHHHHHHHHcc
Confidence 22556778888888888888887754 221000 1134566788899999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHhhh
Q 048749 446 CEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEP-RTGILVNDMNIKLK 515 (536)
Q Consensus 446 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~~ 515 (536)
++++|...+++..+.. +.+..+|..+...+...|++++|.+.|++.++. .|+. .....+..+....+
T Consensus 287 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 287 KPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHH
Confidence 9999999999998862 337889999999999999999999999999974 5653 44555555544433
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=8.9e-19 Score=178.93 Aligned_cols=350 Identities=9% Similarity=0.021 Sum_probs=208.9
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 131 RYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAI 208 (536)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~ 208 (536)
...|+++.|++.|+.+.+.. +.++.+|..+..+|.+.|++++|++.|+++. .+.+..+|..+..++...|++++|+
T Consensus 36 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 36 FTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp HHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 34579999999999999874 5689999999999999999999999999987 7788899999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhc----------------------------------------------------
Q 048749 209 GVFDRRKEFGELDDLSAFQNLLLWLCRY---------------------------------------------------- 236 (536)
Q Consensus 209 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~---------------------------------------------------- 236 (536)
+.|+.+.. .|+... ..+..+...
T Consensus 114 ~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 114 FDLSVLSL---NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHHHhc---CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 99964322 232111 011111111
Q ss_pred ---------------------------CCHHHHHHHHHHhcCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 237 ---------------------------KHVEVAETFFESEKNEFGYDIK-------TMNIILNGWCVLGNVYEAKRFWKD 282 (536)
Q Consensus 237 ---------------------------~~~~~a~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~ 282 (536)
|++++|..+++.+....+.+.. ++..+...+...|++++|...|+.
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 268 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 2455566666554433333322 344445555566666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 048749 283 IIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNV 362 (536)
Q Consensus 283 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 362 (536)
..+.. |+..+|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...|+++.+.... +.
T Consensus 269 ~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~ 344 (537)
T 3fp2_A 269 SINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NV 344 (537)
T ss_dssp HHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CS
T ss_pred HHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CH
Confidence 66543 345556666666666666666666666666542 224555666666666666666666666666554322 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHH---HhcCCCChHHHHHHHHHHCC-----CCCCHHHH
Q 048749 363 TTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLL---KSLKKPEEVPWVLERMERNG-----CKMSTDTY 434 (536)
Q Consensus 363 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll---~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~ 434 (536)
..|..+...|...|++++|.+.+.++.+..+ .+...+..+- ...++.++|.+.++.+.+.. .......+
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 421 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKFP---TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL 421 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence 5566666666666666666666666665542 1122222222 22244555555555544311 11122223
Q ss_pred HHHHHHHHcc----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 435 NVILKLYVNW----------DCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 435 ~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
..+...+... |++++|...+++..+.. +.+...|..+...|...|++++|.+.|++.++.
T Consensus 422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344455555 66666666666665542 224555666666666666666666666666653
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3e-19 Score=181.24 Aligned_cols=362 Identities=9% Similarity=-0.046 Sum_probs=284.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLC 234 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 234 (536)
...+......+.+.|++++|+..|+++. ..|+..+|..+..++...|++++|++.|+++.+.+ +.+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 4567788899999999999999999998 34789999999999999999999999999999876 567789999999999
Q ss_pred hcCCHHHHHHHHHHhcCCCCCC----------------------------------------------------------
Q 048749 235 RYKHVEVAETFFESEKNEFGYD---------------------------------------------------------- 256 (536)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~---------------------------------------------------------- 256 (536)
+.|++++|...|+.+....+++
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999998853221211
Q ss_pred ---------------------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHHHHH
Q 048749 257 ---------------------IKTMNIILNGWCV---LGNVYEAKRFWKDIIK-----SKC--------EPDSVTYATFV 299 (536)
Q Consensus 257 ---------------------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~li 299 (536)
...+......+.. .|++++|..+|+++.+ ... +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 3333333443443 8999999999999887 311 22356778888
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 300 NALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRME 379 (536)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 379 (536)
..+...|++++|..+++++.+... +...+..+...+...|++++|...++++.+... .+...|..+...|...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHH
Confidence 889999999999999999988643 377888889999999999999999999887643 26678888899999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHhc---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 048749 380 TVYEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEE 456 (536)
Q Consensus 380 ~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (536)
+|...|+++.+..+ .+...+..+...+ ++.++|...++.+.+.. +.+...+..+...|.+.|++++|...+++
T Consensus 322 ~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 322 QAGKDFDKAKELDP---ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp HHHHHHHHHHHTCS---SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999988652 2344555555555 44566777777777643 33567888899999999999999999998
Q ss_pred HHHCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCcHHH----HHHHHHHHHhhhhhhhhhHHH
Q 048749 457 MEKKGM-GPD----QRSYTVMIHGLYD---KGRLEDALSYFHEMRLKGMVPEPRT----GILVNDMNIKLKERGEQGKKV 524 (536)
Q Consensus 457 m~~~g~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t----~~~l~~~~~~~~~~~~a~~~~ 524 (536)
+.+... .++ ...|..+...+.. .|++++|...++++++. ... +..+..++.+.|+.++|.+.+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL-----DPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 876421 112 3478888889999 99999999999998763 242 567788888999999999999
Q ss_pred HHhhhc
Q 048749 525 IKLTSL 530 (536)
Q Consensus 525 ~~~~~~ 530 (536)
.+..+.
T Consensus 473 ~~a~~~ 478 (514)
T 2gw1_A 473 EESADL 478 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887554
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=2.3e-18 Score=175.79 Aligned_cols=161 Identities=11% Similarity=-0.016 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048749 226 FQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKK 305 (536)
Q Consensus 226 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 305 (536)
+..+...+...|++++|...++..... .|+..++..+...|...|++++|...++++.+.. +.+..+|..+...+...
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL-HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhc
Confidence 333344444555555555555553221 2234445555555555555555555555554433 22344455555555555
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 306 GKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYL 385 (536)
Q Consensus 306 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~ 385 (536)
|++++|.+.++++.+.. +.+...+..+...|...|++++|..+++++.+... .+...+..+...|...|++++|.+.|
T Consensus 324 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 55555555555554432 11234444555555555555555555555544321 13344444555555555555555555
Q ss_pred HHHHh
Q 048749 386 DEMEQ 390 (536)
Q Consensus 386 ~~m~~ 390 (536)
+++.+
T Consensus 402 ~~a~~ 406 (537)
T 3fp2_A 402 DIAKR 406 (537)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=9.7e-18 Score=161.48 Aligned_cols=313 Identities=10% Similarity=-0.004 Sum_probs=255.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG 266 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 266 (536)
+...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++......+.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 45678889999999999999999999999865 56788999999999999999999999999654446688999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHH------------HHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHH
Q 048749 267 WCVLGNVYEAKRFWKDIIKSKCE---PDSVTYATF------------VNALTKKGKLGTALRLFQAMWEKGRKPDVVTCN 331 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~g~~---~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 331 (536)
|...|++++|...|+++.+.. + .+...+..+ ...+...|++++|.+.++++.+.. +.+...+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999998764 2 244455544 578889999999999999998863 34678899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCC
Q 048749 332 CIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKK 411 (536)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~ 411 (536)
.+...+...|++++|...++++.+... .+...+..+...|...|++++|.+.|++..+.. |+....
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~--------- 224 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD----QDHKRC--------- 224 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHH---------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----ccchHH---------
Confidence 999999999999999999999987643 378899999999999999999999999998865 322111
Q ss_pred CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCCHHHHH
Q 048749 412 PEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPD-Q----RSYTVMIHGLYDKGRLEDAL 486 (536)
Q Consensus 412 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~li~~~~~~g~~~~A~ 486 (536)
...+..+. .......+...+.+.|++++|...++++.+.. |+ . ..|..+...+...|++++|.
T Consensus 225 ----~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 225 ----FAHYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp ----HHHHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----HHHHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 11111111 12233445777889999999999999998863 33 3 23555778899999999999
Q ss_pred HHHHHHHHCCCCC-cHHHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 487 SYFHEMRLKGMVP-EPRTGILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 487 ~~~~~m~~~g~~p-~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
..+++.++. .| ++.++..+..++...|+.++|.+.+.+..+.
T Consensus 293 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999985 34 5777999999999999999999999998544
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=4.8e-18 Score=161.70 Aligned_cols=197 Identities=7% Similarity=-0.070 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048749 154 PGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLL 231 (536)
Q Consensus 154 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 231 (536)
.+...+..+...+...|++++|.++|+++. .+.+...+..++..+...|++++|+.+++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 344455555555555566666666555554 33444445555555555555666665555555533 233444445555
Q ss_pred HHHhcC-CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 048749 232 WLCRYK-HVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGT 310 (536)
Q Consensus 232 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 310 (536)
.+...| ++++|...|+......+.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 555555 55555555555333333344445555555555555555555555544432 1223334444444444455555
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 311 ALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 311 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
|.+.+++..+.. +.+..++..+...+...|++++|...++++
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 554444444431 123334444444444444444444444444
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.1e-17 Score=159.30 Aligned_cols=275 Identities=14% Similarity=0.038 Sum_probs=229.7
Q ss_pred HhhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHH
Q 048749 113 LNQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKT 190 (536)
Q Consensus 113 l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 190 (536)
+...+..++............++++.|+++|+.+.+.. +.+...+..++..+.+.|++++|..+++++. .+.+...
T Consensus 15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 92 (330)
T 3hym_B 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVS 92 (330)
T ss_dssp -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH
Confidence 33334444444444444444589999999999998874 5567778888899999999999999999987 6678889
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048749 191 YGILLNRYAAAH-MVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV 269 (536)
Q Consensus 191 ~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 269 (536)
|..+...+...| ++++|++.|++..+.. +.+...+..+...+...|++++|...++......+.+...+..+...|..
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 999999999999 9999999999999865 45677899999999999999999999999654445567788889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--------CCCCHhhHHHHHHHHHhcC
Q 048749 270 LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKG--------RKPDVVTCNCIIDALCFKK 341 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~g 341 (536)
.|++++|...+++..+.. +.+..++..+...+...|++++|...+++..+.. .+....++..+...|.+.|
T Consensus 172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 999999999999998875 5578899999999999999999999999988742 1334578899999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 342 RIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
++++|...|++..+.... +...|..+...|.+.|++++|.+.|+++.+..
T Consensus 251 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp CHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred CHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 999999999999876433 67889999999999999999999999988754
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=3.3e-15 Score=150.57 Aligned_cols=337 Identities=12% Similarity=0.045 Sum_probs=279.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGR----ARRFVELIQVFDEMPDLVNEKTYGILLNRYAA----AHMV 204 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 204 (536)
.++++.|+..|+.+.+.+ ++..+..+...|.. .+++++|.+.|++.....+...+..|...|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 579999999999998865 68889999999998 89999999999998755678889999999988 8899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 048749 205 EEAIGVFDRRKEFGELDDLSAFQNLLLWLCR----YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV----LGNVYEA 276 (536)
Q Consensus 205 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 276 (536)
++|++.|++..+.| +...+..+...|.. .++.++|...|++.... .+...+..+...|.. .++.++|
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 99999999998865 56778888888887 78999999999985322 378889999999988 8999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHHH
Q 048749 277 KRFWKDIIKSKCEPDSVTYATFVNALTK----KGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCF----KKRIPEALE 348 (536)
Q Consensus 277 ~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~ 348 (536)
.++|++..+.| +..++..+...|.. .+++++|.++|++..+.| +...+..+...|.. .++.++|++
T Consensus 207 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~ 280 (490)
T 2xm6_A 207 AQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALE 280 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 99999998865 56778888888876 889999999999988864 45677777777887 899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc---C---CCChHHH
Q 048749 349 VLREMKNRGCLPNVTTYNSLIKHLCKI-----KRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL---K---KPEEVPW 417 (536)
Q Consensus 349 ~~~~m~~~g~~p~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~---~---~~~~a~~ 417 (536)
.|++..+.| +...+..+...|... +++++|...|++..+.+ . + ..+..+-..+ + +.++|.+
T Consensus 281 ~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--~-~--~a~~~lg~~y~~~g~~~~~~~A~~ 352 (490)
T 2xm6_A 281 WYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--D-A--TAQANLGAIYFRLGSEEEHKKAVE 352 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--C-H--HHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--C-H--HHHHHHHHHHHhCCCcccHHHHHH
Confidence 999998764 567778888888887 89999999999998876 2 2 2222222222 2 3456777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 048749 418 VLERMERNGCKMSTDTYNVILKLYVN----WDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYD----KGRLEDALSYF 489 (536)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~ 489 (536)
.++...+.+ +...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|..+|
T Consensus 353 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 426 (490)
T 2xm6_A 353 WFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWF 426 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 888877764 67888899999988 899999999999999875 67788888888888 89999999999
Q ss_pred HHHHHCCCC
Q 048749 490 HEMRLKGMV 498 (536)
Q Consensus 490 ~~m~~~g~~ 498 (536)
++..+.+..
T Consensus 427 ~~A~~~~~~ 435 (490)
T 2xm6_A 427 DTASTNDMN 435 (490)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHCCCC
Confidence 999987654
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=8.4e-18 Score=162.84 Aligned_cols=285 Identities=9% Similarity=-0.035 Sum_probs=167.9
Q ss_pred ccCCHHHHHH-HHHhCC--CC--C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 168 RARRFVELIQ-VFDEMP--DL--V--NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVE 240 (536)
Q Consensus 168 ~~g~~~~A~~-~~~~~~--~~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 240 (536)
-.|++++|.+ .|++.. .+ + +...+..+...+...|++++|+..|+++.+.. +.+..++..+..++.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467788887 777655 11 1 24557778888888888888888888888765 556777778888888888888
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHhc
Q 048749 241 VAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYAT---------------FVNALTKK 305 (536)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~~ 305 (536)
+|...|+......+.+..++..+...|...|++++|...++++.+.. +.+...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 88888887544345577788888888888888888888888877654 122222211 12222355
Q ss_pred CCHhHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 306 GKLGTALRLFQAMWEKGRKP-DVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEY 384 (536)
Q Consensus 306 g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~ 384 (536)
|++++|...++++.+..... +..++..+...|.+.|++++|+..|+++.+... .+..+|..+...|...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666665542111 345555566666666666666666666554321 2355556666666666666666666
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 048749 385 LDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGP 464 (536)
Q Consensus 385 ~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 464 (536)
|+++.+.. +.+...+..+...|.+.|++++|...++++.+.....
T Consensus 274 ~~~al~~~-----------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 274 YRRALELQ-----------------------------------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHC-----------------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhC-----------------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 66655433 1234455556666666666666666666555421100
Q ss_pred ----------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 465 ----------DQRSYTVMIHGLYDKGRLEDALSYFH 490 (536)
Q Consensus 465 ----------~~~~~~~li~~~~~~g~~~~A~~~~~ 490 (536)
...+|..+..+|...|++++|..+++
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 319 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp ------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 14556666666666666666655544
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=1e-17 Score=162.22 Aligned_cols=296 Identities=12% Similarity=0.008 Sum_probs=229.3
Q ss_pred CCHHHHHH-HHHHHHhCCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 134 FDWEAAYT-FFKWVSREGDYSP--GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAI 208 (536)
Q Consensus 134 ~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~ 208 (536)
++++.|+. .|+.+.+...-.| +...+..+...+.+.|++++|...|+++. .+.+..+|..+...+...|++++|+
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 57788887 7776655432222 35668889999999999999999999987 6678889999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHH---------------HHHHHHhcCCH
Q 048749 209 GVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNI---------------ILNGWCVLGNV 273 (536)
Q Consensus 209 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------li~~~~~~g~~ 273 (536)
+.|+++.+.. +.+..++..+...+...|++++|...++......+.+...+.. .+..+...|++
T Consensus 119 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (368)
T 1fch_A 119 SALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF 197 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccH
Confidence 9999998876 5678899999999999999999999999854333333333321 23344489999
Q ss_pred HHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 048749 274 YEAKRFWKDIIKSKCE-PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLRE 352 (536)
Q Consensus 274 ~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (536)
++|...|+++.+.... ++..++..+...+...|++++|...|+++.+.. +.+..++..+...+.+.|++++|+..|++
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 276 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRR 276 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999886522 158899999999999999999999999998863 33678899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHH
Q 048749 353 MKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTD 432 (536)
Q Consensus 353 m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~ 432 (536)
+.+... .+...+..+...|.+.|++++|...|+++.+.. |+... . .....+....
T Consensus 277 al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~~~~-------------------~-~~~~~~~~~~ 331 (368)
T 1fch_A 277 ALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQ----RKSRG-------------------P-RGEGGAMSEN 331 (368)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----HTC--------------------------CCCCCHH
T ss_pred HHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCCC-------------------c-cccccchhhH
Confidence 987642 368889999999999999999999999987754 21000 0 0000123478
Q ss_pred HHHHHHHHHHccCChhHHHHHHHH
Q 048749 433 TYNVILKLYVNWDCEDKVRHTWEE 456 (536)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~ 456 (536)
+|..+..+|...|+.++|..++++
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHhCChHhHHHhHHH
Confidence 899999999999999999988764
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=6.5e-15 Score=148.36 Aligned_cols=240 Identities=11% Similarity=0.099 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGR----ARRFVELIQVFDEMPDLVNEKTYGILLNRYAA----AHMVE 205 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 205 (536)
++++.|++.|+.+.+.+ ++..+..+..+|.. .+++++|...|++.....+...+..+...|.. .++++
T Consensus 93 ~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 45555555555554432 44444455555544 44555555555554433344455555555544 44555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 048749 206 EAIGVFDRRKEFGELDDLSAFQNLLLWLCR----YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV----LGNVYEAK 277 (536)
Q Consensus 206 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 277 (536)
+|++.|++..+.| +...+..+...|.. .++.++|..+|++... ..+...+..+...|.. .+++++|.
T Consensus 169 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 169 MAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT--SGDELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 5555555555432 34444444444444 4555555555555211 1134444444444443 45555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-----CChHHHHH
Q 048749 278 RFWKDIIKSKCEPDSVTYATFVNALTK----KGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFK-----KRIPEALE 348 (536)
Q Consensus 278 ~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~ 348 (536)
.+|++..+.| +...+..+...|.. .++.++|.++|+...+.| +...+..+...|... +++++|+.
T Consensus 244 ~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 244 VLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 5555554432 23344444444444 455555555555554432 233444444444444 45555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhc
Q 048749 349 VLREMKNRGCLPNVTTYNSLIKHLCKIK---RMETVYEYLDEMEQK 391 (536)
Q Consensus 349 ~~~~m~~~g~~p~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~ 391 (536)
.|++..+.| +...+..+...|...| +.++|.++|++..+.
T Consensus 318 ~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 318 WYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 555554442 3334444444444433 445555555555444
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=7.1e-18 Score=163.27 Aligned_cols=266 Identities=9% Similarity=-0.058 Sum_probs=179.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG 266 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 266 (536)
+...|..+...+.+.|++++|+++|+++.+.. +.+..++..+...+.+.|++++|...|++.....+.+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34557788888888888888888888888765 55677888888888888888888888887544345567788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-CCHhhHHHHH
Q 048749 267 WCVLGNVYEAKRFWKDIIKSKCEPD-----------SVTYATFVNALTKKGKLGTALRLFQAMWEKGRK-PDVVTCNCII 334 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~g~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li 334 (536)
|...|++++|...|+++.+.. |+ ...+..+...+...|++++|.++|+++.+.... ++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 888888888888888877643 21 122333466777777777777777777775221 1466777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCCh
Q 048749 335 DALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEE 414 (536)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~ 414 (536)
..|.+.|++++|++.|+++.+... .+..+|..+..+|.+.|++++|.+.|+++.+..
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------------- 277 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ---------------------- 277 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------------
Confidence 777777777777777777765532 256677777777777777777777777776643
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC---C--------CCHHHHHHHHHHHHhcCCHH
Q 048749 415 VPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGM---G--------PDQRSYTVMIHGLYDKGRLE 483 (536)
Q Consensus 415 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~--------p~~~~~~~li~~~~~~g~~~ 483 (536)
+.+..++..+...|.+.|++++|...|+++.+... . .+...|..+..++...|+.+
T Consensus 278 -------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 278 -------------PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp -------------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred -------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 22456677777777777777777777777665310 0 02456777777777777777
Q ss_pred HHHHHHHH
Q 048749 484 DALSYFHE 491 (536)
Q Consensus 484 ~A~~~~~~ 491 (536)
.+..+.++
T Consensus 345 ~a~~~~~~ 352 (365)
T 4eqf_A 345 LFQAANLG 352 (365)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 66665543
No 22
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=3.5e-19 Score=182.67 Aligned_cols=121 Identities=8% Similarity=0.064 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhH
Q 048749 254 GYDIKTMNIILNGWCVLGNVYEAKRFWKDIIK---SKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTC 330 (536)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 330 (536)
..-..+||+||++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33456788888888888888888888877653 467888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048749 331 NCIIDALCFKKRI-PEALEVLREMKNRGCLPNVTTYNSLIKHLCK 374 (536)
Q Consensus 331 ~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 374 (536)
+++|.++|+.|+. ++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 8888888888774 6777888888888888888888877765554
No 23
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=3.2e-19 Score=183.01 Aligned_cols=152 Identities=14% Similarity=0.191 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH---cCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048749 290 PDSVTYATFVNALTKKGKLGTALRLFQAMWE---KGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYN 366 (536)
Q Consensus 290 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 366 (536)
--..||++||++||+.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||++|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457999999999999999999999988764 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 048749 367 SLIKHLCKIKR-METVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMS------TDTYNVILK 439 (536)
Q Consensus 367 ~li~~~~~~~~-~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~ 439 (536)
+||.++++.|+ .++|.++|++|.+.| +.||..+|++++.++.+. .+.+..+.+ ..++.|+ ..+...|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG--~~PD~vtY~~ll~~~eR~-~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEG--LKLQALFTAVLLSEEDRA-TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHT--CCSHHHHHHSCCCHHHHH-HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcC--CCCChhhcccccChhhHH-HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999998 578999999999999 999999999888654433 222333333 2344443 455566777
Q ss_pred HHHccC
Q 048749 440 LYVNWD 445 (536)
Q Consensus 440 ~~~~~g 445 (536)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777765
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=5.8e-18 Score=161.27 Aligned_cols=279 Identities=14% Similarity=0.102 Sum_probs=129.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDR 213 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 213 (536)
++.+.|.++++.+. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|++.++.
T Consensus 17 ~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 17 GNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 58999999999982 3359999999999999999999999875 5666999999999999999999997777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048749 214 RKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSV 293 (536)
Q Consensus 214 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 293 (536)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+ .
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp ------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHT---------T
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 6663 4567888999999999999999988874 367789999999999999999999999976 3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 294 TYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLC 373 (536)
Q Consensus 294 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 373 (536)
.|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+ ..++.-...++..|.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQ 218 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHH
Confidence 7999999999999999999999988 27899999999999999999996555442 234445667999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHH--HHhcCCCChHHHHHHHHHH-CCCCC------CHHHHHHHHHHHHcc
Q 048749 374 KIKRMETVYEYLDEMEQKNGSCLPNEITFNYL--LKSLKKPEEVPWVLERMER-NGCKM------STDTYNVILKLYVNW 444 (536)
Q Consensus 374 ~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~l--l~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~li~~~~~~ 444 (536)
+.|++++|..+++...... ......|+.+ +.+--+++...+.++.... .+++| +...|..++-.|...
T Consensus 219 k~G~~eEai~lLe~aL~le---~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp HTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999987654 2334444444 4443444444444443322 22332 456788999999999
Q ss_pred CChhHHHHH
Q 048749 445 DCEDKVRHT 453 (536)
Q Consensus 445 g~~~~A~~~ 453 (536)
+++|.|...
T Consensus 296 ~e~d~A~~t 304 (449)
T 1b89_A 296 EEYDNAIIT 304 (449)
T ss_dssp TCHHHHHHH
T ss_pred chHHHHHHH
Confidence 999988764
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=1.4e-16 Score=151.24 Aligned_cols=261 Identities=11% Similarity=-0.031 Sum_probs=144.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 048749 193 ILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGN 272 (536)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 272 (536)
.+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|...+++.....+.+..++..+...|...|+
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence 33334444444444444444444332 22333444444444444444444444444322223344444455555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 048749 273 VYEAKRFWKDIIKSKCEPDSVTYATF--------------VN-ALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDAL 337 (536)
Q Consensus 273 ~~~A~~~~~~m~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 337 (536)
+++|.+.++++.+.. +.+...+..+ .. .+...|++++|.+.++++.+.. +.+..++..+...|
T Consensus 105 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 105 ANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLY 182 (327)
T ss_dssp HHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 555555555554432 1111111111 11 2555666777777777766652 22556666777777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHH
Q 048749 338 CFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPW 417 (536)
Q Consensus 338 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~ 417 (536)
.+.|++++|.+.++++.+... .+..+|..+...|...|++++|.+.|+++.+..
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------------- 236 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN------------------------- 236 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred HHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------------
Confidence 777777777777777665432 246667777777777777777777777766543
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHH
Q 048749 418 VLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGP-----------DQRSYTVMIHGLYDKGRLEDAL 486 (536)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~A~ 486 (536)
+.+...+..+...|...|++++|.+.++++.+..... +...|..+..++...|++++|.
T Consensus 237 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 237 ----------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 2245566667777777777777777777776542111 3566777777777778887777
Q ss_pred HHHHHH
Q 048749 487 SYFHEM 492 (536)
Q Consensus 487 ~~~~~m 492 (536)
.++++.
T Consensus 307 ~~~~~~ 312 (327)
T 3cv0_A 307 LTYAQN 312 (327)
T ss_dssp HHTTCC
T ss_pred HHHHHH
Confidence 776543
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=5.7e-17 Score=156.88 Aligned_cols=276 Identities=11% Similarity=-0.041 Sum_probs=211.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
+...+..+...+.+.|++++|+..|+++. .+.+..+|..+...|...|++++|++.|+++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 44568888888889999999999998887 66788889999999999999999999999888765 5567888888889
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYD----------IKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCE-PDSVTYATFVNA 301 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~ 301 (536)
+...|++++|...+++.....+.+ ...+..+...+...|++++|..+|+++.+.... .+..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 999999999999888853221211 233445688899999999999999999887522 268899999999
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 302 LTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381 (536)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A 381 (536)
+...|++++|++.|+++.+.. +.+..++..+..+|.+.|++++|+..|+++.+... .+..+|..+..+|.+.|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999863 34688999999999999999999999999987632 2588999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 048749 382 YEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEE 456 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (536)
...|+++.+.. |+...-. .......+...|..+..++...|+.+.+..+.++
T Consensus 301 ~~~~~~al~~~----~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQ----RKSRNQQ-------------------QVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHH----HCC-------------------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhC----cccCCCc-------------------ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999987754 2110000 0000012457888999999999999988887654
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=2e-16 Score=150.22 Aligned_cols=275 Identities=10% Similarity=-0.008 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLC 234 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 234 (536)
..+..+...+.+.|++++|..+|+++. .+.+..+|..+...+...|++++|.+.|+++.+.. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 345556666666777777777776665 44566666666677777777777777777666653 445666666666777
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048749 235 RYKHVEVAETFFESEKNEFGYDIKTMNII--------------LN-GWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFV 299 (536)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 299 (536)
..|++++|...++......+.+...+..+ .. .+...|++++|...++++.+.. +.+..++..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 77777777777666432222222233222 22 3778899999999999998775 45788899999
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 300 NALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRME 379 (536)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 379 (536)
..+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...|+++.+... .+...+..+...|.+.|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHH
Confidence 99999999999999999998863 34678899999999999999999999999887642 36888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 048749 380 TVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEME 458 (536)
Q Consensus 380 ~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 458 (536)
+|.+.|+++.+..+.. .+.. + ......+...+..+..++.+.|+.++|..++++..
T Consensus 258 ~A~~~~~~a~~~~~~~-~~~~------------~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGG-TTPT------------G----------EASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHTTS-CC---------------------------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhCCcc-cccc------------c----------cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999987754100 0000 0 00001146788889999999999999999887543
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=4.2e-14 Score=143.94 Aligned_cols=386 Identities=9% Similarity=0.029 Sum_probs=255.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH-HhcCCHHHHHH-
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRY-AAAHMVEEAIG- 209 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~-~~~g~~~~A~~- 209 (536)
.++++.|..+|+.+.+. ++.+...|..++..+.+.|++++|..+|++.. ..|+...|...+... ...|+.++|.+
T Consensus 25 ~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~ 102 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEK 102 (530)
T ss_dssp SSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHH
T ss_pred hCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHH
Confidence 46889999999998886 46678889999999999999999999999887 446777887777533 34566665554
Q ss_pred ---HHHHHHH-cCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHhcCCCCCC--HHHHHHHHHHH------
Q 048749 210 ---VFDRRKE-FGELD-DLSAFQNLLLWLCR---------YKHVEVAETFFESEKNEFGYD--IKTMNIILNGW------ 267 (536)
Q Consensus 210 ---~~~~m~~-~g~~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~------ 267 (536)
+|++... .|..| +...|...+....+ .|+++.|..+|++... .+.+ ...|.......
T Consensus 103 ~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~ 181 (530)
T 2ooe_A 103 MAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIH 181 (530)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchh
Confidence 6766654 35443 45677777766554 6788889999888544 2221 23343322211
Q ss_pred -------HhcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHhc----CCH----hHHHHHH
Q 048749 268 -------CVLGNVYEAKRFWKDII------KSK---CEPD--------SVTYATFVNALTKK----GKL----GTALRLF 315 (536)
Q Consensus 268 -------~~~g~~~~A~~~~~~m~------~~g---~~~~--------~~~~~~li~~~~~~----g~~----~~a~~~~ 315 (536)
.+.++++.|..+++.+. +.. ++|+ ...|...+...... ++. +.+..+|
T Consensus 182 ~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y 261 (530)
T 2ooe_A 182 LAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAY 261 (530)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHH
Confidence 13455677777766532 111 2343 24566655443322 222 3677788
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHh-------cCChH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 316 QAMWEKGRKPDVVTCNCIIDALCF-------KKRIP-------EALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETV 381 (536)
Q Consensus 316 ~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A 381 (536)
++.... .+.+...|..+...+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|++++|
T Consensus 262 ~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A 340 (530)
T 2ooe_A 262 EQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV 340 (530)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH
Confidence 888775 33466777777777765 68876 8888888887522233578888888888888999999
Q ss_pred HHHHHHHHhcCCCCCCc--HHHHHHHHHh---cCCCChHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCChhHHHHHHH
Q 048749 382 YEYLDEMEQKNGSCLPN--EITFNYLLKS---LKKPEEVPWVLERMERNGCKMSTDTYNVILKL-YVNWDCEDKVRHTWE 455 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~--~~~~~~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~ 455 (536)
.++|+++.+.. |+ ...|...... .++.++|.++++...+.. +.+...|...... +...|+.++|..+|+
T Consensus 341 ~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e 415 (530)
T 2ooe_A 341 HSIYNRLLAIE----DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFE 415 (530)
T ss_dssp HHHHHHHHHSS----SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHhCcc----ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 99999888754 33 2345544443 355667778888777642 2233333332222 335788999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCc--HHHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 048749 456 EMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKG-MVPE--PRTGILVNDMNIKLKERGEQGKKVIKLT 528 (536)
Q Consensus 456 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~l~~~~~~~~~~~~a~~~~~~~~ 528 (536)
+..+.. +-+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...+...+......|+.+.+.+...++.
T Consensus 416 ~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 416 LGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 877652 2357888888888888899999999999888763 2333 2246666777777788877777766654
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=1.6e-15 Score=141.23 Aligned_cols=272 Identities=9% Similarity=0.007 Sum_probs=165.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048749 198 YAAAHMVEEAIGVFDRRKEFGELDDL--SAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYE 275 (536)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 275 (536)
....|++..|+..+++.... .|+. .....+..+|...|+++.|...++. .-+|+..++..+...+...|+.++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34456666666665544332 2222 2334455666666666666654432 234556666666666667777777
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048749 276 AKRFWKDIIKSKCEP-DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 276 A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777766655333 344555555666777777777776665 3455666666677777777777777777766
Q ss_pred HCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCH
Q 048749 355 NRGCLPNVTTY---NSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMST 431 (536)
Q Consensus 355 ~~g~~p~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~ 431 (536)
+.. |+.... ...+..+...|++++|..+|+++.+.. +.+.
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-----------------------------------p~~~ 200 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-----------------------------------SPTL 200 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-----------------------------------CCCH
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-----------------------------------CCcH
Confidence 543 332111 112233333466777777777766543 3467
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCcHHHHHHHHHH
Q 048749 432 DTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLED-ALSYFHEMRLKGMVPEPRTGILVNDM 510 (536)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~t~~~l~~~ 510 (536)
..++.+..++.+.|++++|...+++..+.. +-+..++..++..+...|+.++ +.++++++++ +.|+... +...
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~---~~d~ 274 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF---IKEY 274 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH---HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH---HHHH
Confidence 778888888888888888888888877653 2356778888888888888765 5678887776 3455433 2334
Q ss_pred HHhhhhhhhhhHH
Q 048749 511 NIKLKERGEQGKK 523 (536)
Q Consensus 511 ~~~~~~~~~a~~~ 523 (536)
..+.+.++++...
T Consensus 275 ~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 275 RAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5556666655543
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=2.8e-17 Score=156.62 Aligned_cols=306 Identities=11% Similarity=0.099 Sum_probs=130.2
Q ss_pred HccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 167 GRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFF 246 (536)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 246 (536)
-+.|++++|.+.++++.. ..+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++
T Consensus 14 ~~~~~ld~A~~fae~~~~---~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE---PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 367889999999999953 34999999999999999999999965 367889999999999999999999988
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 048749 247 ESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPD 326 (536)
Q Consensus 247 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 326 (536)
+...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 85 ~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 85 QMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 776554 4567889999999999999999998884 477789999999999999999999999976
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 048749 327 VVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLL 406 (536)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll 406 (536)
..|..++.++.+.|++++|++.+.++ .++.+|..++.+|...|+++.|......+. ..|+. ...++
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~--l~~lv 214 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADE--LEELI 214 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHH--HHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhh--HHHHH
Confidence 47999999999999999999999988 288999999999999999999966554422 22333 22344
Q ss_pred Hhc---CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-CCCCC------CHHHHHHHHHHH
Q 048749 407 KSL---KKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEK-KGMGP------DQRSYTVMIHGL 476 (536)
Q Consensus 407 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p------~~~~~~~li~~~ 476 (536)
..| ++.+++..+++...... +-....|+-|..+|++- ++++..+-++.... -+++| +...|..+.-.|
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 444 44445555555544433 34566777777777654 23333333332222 22233 344577777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhhh
Q 048749 477 YDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERG 518 (536)
Q Consensus 477 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~ 518 (536)
...++++.|.. .|+++ .|+......+.+...+....+
T Consensus 293 ~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~e 329 (449)
T 1b89_A 293 DKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVE 329 (449)
T ss_dssp HHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTH
T ss_pred HhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHH
Confidence 88888887765 45553 344444555556666665555
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=4.8e-15 Score=138.00 Aligned_cols=247 Identities=13% Similarity=0.099 Sum_probs=203.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPG--SNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
.|++..|+..++..... .|+ ......+..+|...|++++|+..++.. .+++..++..+...+...|+.++|++.
T Consensus 12 ~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp TTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 37999999988776443 233 345567789999999999999888764 556778899999999999999999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048749 211 FDRRKEFGELD-DLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCE 289 (536)
Q Consensus 211 ~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 289 (536)
++++...+..| +...+..+...+...|++++|...+++ +.+..++..++..|.+.|++++|.+.|+.+.+..
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 160 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-- 160 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence 99999877544 566777788999999999999999987 5688899999999999999999999999998874
Q ss_pred CCHHHH---HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048749 290 PDSVTY---ATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYN 366 (536)
Q Consensus 290 ~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 366 (536)
|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|++..+.... +..++.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 443211 22334444568999999999999987 4568889999999999999999999999998876433 788899
Q ss_pred HHHHHHHhcCCHHH-HHHHHHHHHhcC
Q 048749 367 SLIKHLCKIKRMET-VYEYLDEMEQKN 392 (536)
Q Consensus 367 ~li~~~~~~~~~~~-A~~~~~~m~~~~ 392 (536)
.++..+...|+.++ +.++++++.+..
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999876 678999998865
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=1e-13 Score=141.13 Aligned_cols=375 Identities=9% Similarity=-0.010 Sum_probs=265.8
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048749 143 FKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGEL 220 (536)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 220 (536)
|+...+.. +.|...|..++. +.+.|++++|..+|+++. .+.+...|...+..+.+.|++++|.++|++..+..
T Consensus 2 le~al~~~--P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC--CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 34444442 558889999998 478999999999999987 67788899999999999999999999999999864
Q ss_pred CCHHHHHHHHHHH-HhcCCHHHHHH----HHHHhc--CCC-CCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 048749 221 DDLSAFQNLLLWL-CRYKHVEVAET----FFESEK--NEF-GYDIKTMNIILNGWCV---------LGNVYEAKRFWKDI 283 (536)
Q Consensus 221 ~~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~--~~~-~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m 283 (536)
|+...|..++... ...|+.+.|.+ +|+... .+. +++...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6887777777533 35577666554 666632 122 3467788888876654 78999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHH-------------HhcCCHhHHHHHHHHHH------HcC---CCCC--------HhhHHHH
Q 048749 284 IKSKCEPDSVTYATFVNAL-------------TKKGKLGTALRLFQAMW------EKG---RKPD--------VVTCNCI 333 (536)
Q Consensus 284 ~~~g~~~~~~~~~~li~~~-------------~~~g~~~~a~~~~~~m~------~~g---~~p~--------~~~~~~l 333 (536)
++.........|....... ...++++.|..++.++. +.. ++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8731111123443332211 12355777777776632 211 2443 2466666
Q ss_pred HHHHHhc----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhc
Q 048749 334 IDALCFK----KRI----PEALEVLREMKNRGCLPNVTTYNSLIKHLCK-------IKRME-------TVYEYLDEMEQK 391 (536)
Q Consensus 334 i~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~~~~~-------~A~~~~~~m~~~ 391 (536)
+...... ++. ++|..+|++..... +-+...|......+.+ .|+++ +|..+|++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 6544332 233 47888999987753 2368888888888776 68887 999999999873
Q ss_pred CCCCCCcHHHHHHHH---HhcCCCChHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 048749 392 NGSCLPNEITFNYLL---KSLKKPEEVPWVLERMERNGCKM-S-TDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQ 466 (536)
Q Consensus 392 ~~~~~p~~~~~~~ll---~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 466 (536)
- .+-+...|..+. ...++.++|..+++...+. .| + ...|..++..+.+.|++++|.++|++..+.. +.+.
T Consensus 316 ~--~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~ 390 (530)
T 2ooe_A 316 L--LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRH 390 (530)
T ss_dssp T--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCT
T ss_pred h--CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCch
Confidence 1 122344444444 3457788899999999885 34 3 3589999999999999999999999998762 1223
Q ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 467 RSYTVMIHG-LYDKGRLEDALSYFHEMRLKGMVP-EPRTGILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 467 ~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
..|...... +...|+.++|..+|++.++. .| ++..+..++....+.|+.++|...+.+..+.
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 333332222 34689999999999999875 35 4666888899999999999999999997654
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=4.7e-14 Score=141.43 Aligned_cols=340 Identities=10% Similarity=-0.031 Sum_probs=200.5
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---
Q 048749 153 SPGSNVFNAILDVLGRARRFVELIQVFDEMP-----------DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFG--- 218 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--- 218 (536)
......||.+..++...|++++|++.|++.. .+....+|+.+..+|...|++++|+..+++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 3446779999999999999999998887653 33456788999999999999999999888765421
Q ss_pred ----CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCC
Q 048749 219 ----ELDDLSAFQNLLLWLCRY--KHVEVAETFFESEKNEFGYDIKTMNIILNGW---CVLGNVYEAKRFWKDIIKSKCE 289 (536)
Q Consensus 219 ----~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~ 289 (536)
......++.....++... +++++|...|++.....+.+...+..+..++ ...++.++|++.+++..+.. +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 112345666665555554 4688899988885433344566665555543 34677778888888877664 4
Q ss_pred CCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048749 290 PDSVTYATFVNALTK----KGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTY 365 (536)
Q Consensus 290 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 365 (536)
.+..++..+...+.. .|++++|.+++++..... +.+..++..+...|.+.|++++|...+++..+.... +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 455666666555544 456788888888887753 335677888888888999999999999888765322 45666
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCC
Q 048749 366 NSLIKHLCKI-------------------KRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNG 426 (536)
Q Consensus 366 ~~li~~~~~~-------------------~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~ 426 (536)
..+...|... +..++|...+.+..+..+
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--------------------------------- 331 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND--------------------------------- 331 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT---------------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC---------------------------------
Confidence 6665555332 123344444444444332
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCC-------
Q 048749 427 CKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQR--SYTVMIH-GLYDKGRLEDALSYFHEMRLKG------- 496 (536)
Q Consensus 427 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~g------- 496 (536)
.+...+..+...|...|++++|.+.|++..+....|... .+..+.. .....|++++|+..|++.++..
T Consensus 332 --~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~ 409 (472)
T 4g1t_A 332 --NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE 409 (472)
T ss_dssp --TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH
T ss_pred --chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH
Confidence 122334444555555555555555555554432211110 1111111 1223455555555554443321
Q ss_pred ----------------CCCcHHHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 497 ----------------MVPEPRTGILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 497 ----------------~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
-+.++.++..+..++...|+.++|.+.+.+..+.
T Consensus 410 ~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 410 KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 1234567899999999999999999999997654
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=2e-12 Score=137.44 Aligned_cols=301 Identities=14% Similarity=0.109 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCR 235 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 235 (536)
+.+|..+..++.+.|++++|.+.|.+. .|...|.-++.++.+.|++++|++.|...++.. ++....+.++.+|++
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 1179 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHh
Confidence 445555555555555555555555544 344455555555555555555555555544432 222222235555555
Q ss_pred cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 048749 236 YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLF 315 (536)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 315 (536)
.+++++...+.. .++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+
T Consensus 1180 l~rleele~fI~------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1180 TNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred hcCHHHHHHHHh------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 555554332221 234444445555555566666666665553 24555666666666666666655
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048749 316 QAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSC 395 (536)
Q Consensus 316 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 395 (536)
++. .+..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++......+ .
T Consensus 1245 rKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler-a 1312 (1630)
T 1xi4_A 1245 RKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLER-A 1312 (1630)
T ss_pred HHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh-h
Confidence 544 23455555555666666655555544332 23566777889999999999999999988765431 1
Q ss_pred CCcHHHHHHHHHhcCCCChHHHHHHHHHHCC-CCC------CHHHHHHHHHHHHccCChhHHHHH--------HH-----
Q 048749 396 LPNEITFNYLLKSLKKPEEVPWVLERMERNG-CKM------STDTYNVILKLYVNWDCEDKVRHT--------WE----- 455 (536)
Q Consensus 396 ~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~-~~~------~~~~~~~li~~~~~~g~~~~A~~~--------~~----- 455 (536)
.....|.-..+.+-.+.+...+.++...+.+ +++ +...|.-++-.|.+.|+++.|... |+
T Consensus 1313 H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk 1392 (1630)
T 1xi4_A 1313 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFK 1392 (1630)
T ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHH
Confidence 2222333344444455565555555444433 222 567899999999999999999832 22
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHH
Q 048749 456 EMEKKGMGPDQRSYTVMIHGLYDKG---------------RLEDALSYFH 490 (536)
Q Consensus 456 ~m~~~g~~p~~~~~~~li~~~~~~g---------------~~~~A~~~~~ 490 (536)
+.... ..|...|...+.-|...+ +.+++.++|.
T Consensus 1393 ~~i~k--v~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1393 DIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHhcc--cccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 22211 346666766666666655 6666666665
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.65 E-value=4e-12 Score=135.20 Aligned_cols=363 Identities=11% Similarity=0.070 Sum_probs=218.7
Q ss_pred CCCCCHHHHHHHHHh--ccCCHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHH---------------------------H
Q 048749 117 ELTLTDDLIVNVINR--YRFDWEAAYTFFKWVSREGD-YSPGSNVFNAILDV---------------------------L 166 (536)
Q Consensus 117 ~~~~~~~~~~~~l~~--~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~---------------------------~ 166 (536)
+...+++.+....+. ..+.+..|+++++.+.-.+. +.-+....+.++.. +
T Consensus 980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Ia 1059 (1630)
T 1xi4_A 980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIA 1059 (1630)
T ss_pred ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHH
Confidence 334455544333333 45799999999999885432 33345555555543 3
Q ss_pred HccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 167 GRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFF 246 (536)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 246 (536)
...|.+++|..+|++.. ......+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++|...|
T Consensus 1060 i~lglyEEAf~IYkKa~--~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD--VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HhCCCHHHHHHHHHHcC--CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 44556666666666653 22222222222 455566666665543 33556667777777777777777777
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 048749 247 ESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPD 326 (536)
Q Consensus 247 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 326 (536)
.+. .|...|..++..|.+.|++++|.+++....+.. ++....+.++.+|++.+++++...+. + .++
T Consensus 1129 iKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1129 IKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred Hhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 553 366666777777777777777777776655543 22222334667777777766433332 1 234
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 048749 327 VVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLL 406 (536)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll 406 (536)
...|..+...|...|++++|..+|... ..|..+..+|++.|++++|.+.+++. .+..+|..+-
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVC 1257 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--------CCHHHHHHHH
Confidence 455666777777777777777777764 36777777777888888888777765 2345666665
Q ss_pred HhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHH
Q 048749 407 KSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDK--GRLED 484 (536)
Q Consensus 407 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~ 484 (536)
.+|...++......-- .++..+...+..++..|.+.|.+++|+.+++...... +-....|+-|...|++. ++..+
T Consensus 1258 ~acve~~Ef~LA~~cg--l~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCG--LHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred HHHhhhhHHHHHHHHH--HhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHH
Confidence 5554444422221111 1244567778888888999999999999987776543 22345666666666654 44455
Q ss_pred HHHHHHHHHHCCCCC------cHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 048749 485 ALSYFHEMRLKGMVP------EPRTGILVNDMNIKLKERGEQGKKVIK 526 (536)
Q Consensus 485 A~~~~~~m~~~g~~p------~~~t~~~l~~~~~~~~~~~~a~~~~~~ 526 (536)
++++|..-. ++.| +...+.-+.-.+.+.|+++.|...+.+
T Consensus 1335 hlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1335 HLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 555554322 2333 344477777888888888887755443
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.4e-13 Score=125.50 Aligned_cols=223 Identities=13% Similarity=0.082 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC---CCCC----HHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNE---FGYD----IKTMN 261 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~ 261 (536)
..|..+...+...|++++|++.|++..+.. .+..++..+..++...|++++|...++..... ..++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345556666666666666666666666555 55555555666666666666666655553111 0111 34445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 048749 262 IILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKK 341 (536)
Q Consensus 262 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 341 (536)
.+...|...|++++|...|++..+.. |+. ..+.+.|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~------------------------------------------~~~~~~~ 119 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA------------------------------------------DILTKLR 119 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH------------------------------------------HHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh------------------------------------------HHHHHHh
Confidence 55555555555555555555554432 221 2233344
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHH
Q 048749 342 RIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLER 421 (536)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~ 421 (536)
++++|...++.+..... .+...+..+...+...|++++|.+.|+++.+..
T Consensus 120 ~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----------------------------- 169 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA----------------------------- 169 (258)
T ss_dssp HHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------
T ss_pred HHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----------------------------
Confidence 45555555555444311 123444455555555555555555555554433
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 422 MERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 422 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
+.+...+..+...|...|++++|...+++..+.. +.+...|..+...+...|++++|...+++.++
T Consensus 170 ------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 170 ------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1133445555555555555555555555555432 22345555555555555666666555555554
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=1.7e-13 Score=137.22 Aligned_cols=361 Identities=11% Similarity=-0.004 Sum_probs=235.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhC-------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC----------CCC
Q 048749 124 LIVNVINRYRFDWEAAYTFFKWVSRE-------GDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP----------DLV 186 (536)
Q Consensus 124 ~~~~~l~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~~ 186 (536)
-.++.+....|+++.|++.|+.+.+. ...+....+|+.+..+|...|++++|...+++.. ...
T Consensus 55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~ 134 (472)
T 4g1t_A 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE 134 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchh
Confidence 34566666678999999999987542 1122346789999999999999999998888754 223
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHhcCCCCCCHHHHH
Q 048749 187 NEKTYGILLNRYAAA--HMVEEAIGVFDRRKEFGELDDLSAFQNLLLW---LCRYKHVEVAETFFESEKNEFGYDIKTMN 261 (536)
Q Consensus 187 ~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 261 (536)
...++..+..++... +++++|++.|++..+.. +.+...+..+..+ +...++.++|.+.+++.....+.+..++.
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~ 213 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKV 213 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHH
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHH
Confidence 456777776666654 46999999999998865 4456666555554 34567778888888874333355777777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 048749 262 IILNGWCV----LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDAL 337 (536)
Q Consensus 262 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 337 (536)
.+...+.. .|++++|.+++++..... +.+..++..+...|...|++++|...+++..+.. +-+..++..+...|
T Consensus 214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 214 LLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 66665554 467789999999988765 5577889999999999999999999999998863 23456666665555
Q ss_pred Hhc-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCc
Q 048749 338 CFK-------------------KRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPN 398 (536)
Q Consensus 338 ~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~ 398 (536)
... +..++|...+++..+.... +...+..+...|...|++++|.+.|++..+.. ..+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~--~~~~ 368 (472)
T 4g1t_A 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKE--LTPV 368 (472)
T ss_dssp HHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC--CCHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC--CCCh
Confidence 322 2356788888887665322 45667888899999999999999999998865 2222
Q ss_pred HH--H---HHHHH-HhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048749 399 EI--T---FNYLL-KSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVM 472 (536)
Q Consensus 399 ~~--~---~~~ll-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 472 (536)
.. . +..+. ...++.++|...+++..+.. |+..... +..+.+..+++...+.. +.+..+|..+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~L 436 (472)
T 4g1t_A 369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVL 436 (472)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 21 1 11111 12244567777777777643 3322211 12234455555555542 4467889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCcHH
Q 048749 473 IHGLYDKGRLEDALSYFHEMRLKG-MVPEPR 502 (536)
Q Consensus 473 i~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ 502 (536)
...|...|++++|++.|++.++.| ..|+..
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp HHHHHHHHHCC--------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 999999999999999999998864 344443
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=3.2e-14 Score=126.38 Aligned_cols=207 Identities=10% Similarity=-0.066 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
+...+..+...+.+.|++++|...|++.. .+.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 44445555555555555555555555443 34445555555555555555555555555555443 2334444444444
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTAL 312 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 312 (536)
+.+.+. .. .. .+...|++++|+..|++..+.. +-+...|..+..++...|++++|+
T Consensus 83 ~~~~~~-----------~~---~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 83 YVALYR-----------QA---ED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp HHHHHH-----------TC---SS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhh-----------hh---hh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHH
Confidence 443300 00 00 0001166677777776666553 334566666666677777777777
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 313 RLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEME 389 (536)
Q Consensus 313 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 389 (536)
..|++..+.. .+...+..+..+|...|++++|+..|++..+.... +...+..+...+.+.|++++|.+.|++..
T Consensus 139 ~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 139 ASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777766665 46666666777777777777777777766654322 45666666666777777777777666554
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=5.1e-14 Score=125.12 Aligned_cols=197 Identities=14% Similarity=0.001 Sum_probs=143.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048749 220 LDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFV 299 (536)
Q Consensus 220 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 299 (536)
+++...+..+...+.+.|++++|...|++.....+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34556666777777777777777777777555556677777777778888888888888888777665 44567777777
Q ss_pred HHHHhc-----------CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048749 300 NALTKK-----------GKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSL 368 (536)
Q Consensus 300 ~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 368 (536)
..+... |++++|+..|++..+.. +-+...+..+..++...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 778877 99999999999999863 2357788899999999999999999999998877 688999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhc---CCCChHHHHHHHHH
Q 048749 369 IKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSL---KKPEEVPWVLERME 423 (536)
Q Consensus 369 i~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~ 423 (536)
..+|...|++++|...|++..+..+ .+...+..+-..+ ++.++|...++...
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAP---KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999998752 2344454444444 55666766665543
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.5e-13 Score=125.48 Aligned_cols=224 Identities=14% Similarity=0.075 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGE--LDD----LSAFQ 227 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~ 227 (536)
...+..+...+.+.|++++|...|++.. . .+..+|..+...+...|++++|++.|++..+... .++ ..++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 4567777888888888888888888776 5 6777888888888888888888888888776431 112 46777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048749 228 NLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGK 307 (536)
Q Consensus 228 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 307 (536)
.+...+...|++++|...|+..... .|+. ..+.+.|++++|...++.+.... +.+...+..+...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE-HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc-Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 7888888888888888888874321 2332 34566788888888888887754 3355677888888888999
Q ss_pred HhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 308 LGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDE 387 (536)
Q Consensus 308 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 387 (536)
+++|...+++..+.. +.+..++..+...|.+.|++++|...|++..+... .+...|..+...|.+.|++++|.+.|++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999998888763 33677888888889999999999999998877542 2577888888889999999999999988
Q ss_pred HHhc
Q 048749 388 MEQK 391 (536)
Q Consensus 388 m~~~ 391 (536)
..+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=4.4e-13 Score=122.03 Aligned_cols=198 Identities=9% Similarity=-0.029 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
...+..+...+...|++++|.+.|+++. .+.+..+|..+...+...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4456666666777777777777777665 44556666777777777777777777777666553 33455566666666
Q ss_pred HhcCCHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 048749 234 CRYKHVEVAETFFESEKN--EFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTA 311 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 311 (536)
...|++++|..++++... ..+.+...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666433 223344555555555666666666666666555443 22345555555555555555555
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 312 LRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 312 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
...++.+.+.. +.+...+..+...+.+.|+.++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 55555554431 223444445555555555555555555555443
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=5.8e-13 Score=118.67 Aligned_cols=203 Identities=10% Similarity=0.008 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 048749 188 EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGW 267 (536)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 267 (536)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++......+.+..++..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445555555555566666666665555543 334555555555566666666666666554332344555666666666
Q ss_pred Hhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 048749 268 CVL-GNVYEAKRFWKDIIKSKCEPD-SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE 345 (536)
Q Consensus 268 ~~~-g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 345 (536)
... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 666 666666666666665222222 4556666666666777777777776666642 2245566666667777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 346 ALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
|..+++++.+.....+...+..+...+...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 77777766554321355566666666667777777777777766543
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=4.6e-13 Score=121.88 Aligned_cols=202 Identities=12% Similarity=0.016 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 048749 188 EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGW 267 (536)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 267 (536)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...+++.....+.+..++..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 5678889999999999999999999998875 567889999999999999999999999996544466888999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHH
Q 048749 268 CVLGNVYEAKRFWKDIIKSKCEP-DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEA 346 (536)
Q Consensus 268 ~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 346 (536)
...|++++|.++++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998733344 56778888999999999999999999998863 33678889999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 347 LEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 347 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
...++++.+... .+...+..+...+...|+.++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999987543 467888889999999999999999999998865
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=4.1e-13 Score=119.64 Aligned_cols=201 Identities=12% Similarity=0.054 Sum_probs=171.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048749 154 PGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLL 231 (536)
Q Consensus 154 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 231 (536)
.+..++..+...+...|++++|.+.|+++. .+.+...|..+...+...|++++|++.|+++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 457788889999999999999999999877 66778899999999999999999999999998865 557788889999
Q ss_pred HHHhc-CCHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 232 WLCRY-KHVEVAETFFESEKN--EFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL 308 (536)
Q Consensus 232 ~~~~~-~~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 308 (536)
.+... |++++|...++.... ..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999654 334457788999999999999999999999998765 44678889999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 309 GTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 309 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
++|...++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999888633246777888888889999999999999998754
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=4.1e-12 Score=117.17 Aligned_cols=225 Identities=10% Similarity=0.031 Sum_probs=187.0
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048749 154 PGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAA----AHMVEEAIGVFDRRKEFGELDDLSAFQNL 229 (536)
Q Consensus 154 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 229 (536)
.++.++..+...|.+.|++++|...|++...+.+..++..+...|.. .+++++|++.|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 36778888888888999999999999887755677788888888888 899999999999988865 67788888
Q ss_pred HHHHHh----cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048749 230 LLWLCR----YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV----LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNA 301 (536)
Q Consensus 230 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 301 (536)
...+.. .+++++|...|++.... .+...+..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 888888 89999999999884321 277888888888888 899999999999988865 56677778888
Q ss_pred HHh----cCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 302 LTK----KGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCF----KKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLC 373 (536)
Q Consensus 302 ~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 373 (536)
|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 887 899999999999988864 46677788888888 899999999999988764 3677778888888
Q ss_pred h----cCCHHHHHHHHHHHHhcC
Q 048749 374 K----IKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 374 ~----~~~~~~A~~~~~~m~~~~ 392 (536)
+ .+++++|.+.|++..+.+
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHHcC
Confidence 8 889999999999988876
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=6.1e-12 Score=116.01 Aligned_cols=125 Identities=14% Similarity=0.137 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHh-cCCCCCCHHHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCR----YKHVEVAETFFESE-KNEFGYDIKTMN 261 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~-~~~~~~~~~~~~ 261 (536)
+..++..+...+...|++++|++.|++..+ +.+..++..+...+.. .+++++|...|++. ..+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 344455555555555555555555555554 2233344444444444 44444444444442 111 334444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHH
Q 048749 262 IILNGWCV----LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTK----KGKLGTALRLFQAMWE 320 (536)
Q Consensus 262 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~ 320 (536)
.+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|++.|++..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 44444444 444444444444444332 33334444444444 4444444444444443
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=1.5e-13 Score=124.25 Aligned_cols=198 Identities=15% Similarity=0.105 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
....|..+...+.+.|++++|...|+++. .+.+...+..+...+...|++++|++.|+++.+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 34455555556666666666666666554 34455556666666666666666666666655543 3344455555555
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTAL 312 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 312 (536)
+...|++++|...+++.....+.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555555332223344455555555555555555555555554432 223444445555555555555555
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 313 RLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 313 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
+.++++.+.. +.+..++..+..+|.+.|++++|.+.++++.+
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 5555544431 12344444445555555555555555555444
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=4.5e-13 Score=123.45 Aligned_cols=233 Identities=11% Similarity=-0.016 Sum_probs=130.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 048749 158 VFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD--LSAFQNLLLWL 233 (536)
Q Consensus 158 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~ 233 (536)
.+......+.+.|++++|+..|++.. .+.+...|..+...+...|++++|++.|++..+.+..++ ..+|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 34445555566666666666666554 333444556666666666666666666666655221111 22355566666
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 313 (536)
...|++++|...|+......+.+..++..+...|...|++++|...|++..+.. +.+...|..+...+...+++++|.+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666433334455566666666666666666666666655542 3344555555523333446666666
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 048749 314 LFQAMWEKGRKPDVVTCNCIIDALCFKKR---IPEALEVLREMKNRG-CLPN------VTTYNSLIKHLCKIKRMETVYE 383 (536)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~li~~~~~~~~~~~A~~ 383 (536)
.|+++.+.. +.+...+..+...+...|+ +++|...++++.+.. -.|+ ..+|..+...|.+.|++++|.+
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666642 2234555555566666665 666666666654321 0122 2456666667777777777777
Q ss_pred HHHHHHhcC
Q 048749 384 YLDEMEQKN 392 (536)
Q Consensus 384 ~~~~m~~~~ 392 (536)
.|+++.+..
T Consensus 243 ~~~~al~~~ 251 (272)
T 3u4t_A 243 AWKNILALD 251 (272)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 777776654
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=6.9e-14 Score=129.10 Aligned_cols=244 Identities=10% Similarity=-0.074 Sum_probs=174.7
Q ss_pred CCHHHHHHHHHHHHhCCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYS--PGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIG 209 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (536)
++++.|+..|+.+.+..... .+..++..+...+...|++++|...|+++. .+.+..+|..+...+...|++++|++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 58899999999988763211 246778888999999999999999999887 66778899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048749 210 VFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCE 289 (536)
Q Consensus 210 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 289 (536)
.|++..+.. +.+..++..+...+.+.|++++|...++......+.+. .....+..+...|++++|...+++..... +
T Consensus 99 ~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~ 175 (275)
T 1xnf_A 99 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP-FRSLWLYLAEQKLDEKQAKEVLKQHFEKS-D 175 (275)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHS-C
T ss_pred HHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 999988865 44677888888888889999999988888543323333 33344445566788888888887776653 3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048749 290 PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP---DVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYN 366 (536)
Q Consensus 290 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 366 (536)
++...+. ++..+...++.++|.+.++......... +..++..+...|.+.|++++|...|+++.+.. |+. +.
T Consensus 176 ~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~ 250 (275)
T 1xnf_A 176 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FV 250 (275)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CH
T ss_pred cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HH
Confidence 3434443 6666777777888888887776542110 14667778888888888888888888887653 321 22
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 048749 367 SLIKHLCKIKRMETVYEYL 385 (536)
Q Consensus 367 ~li~~~~~~~~~~~A~~~~ 385 (536)
....++...|++++|++.+
T Consensus 251 ~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 2344666777777777665
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=3.9e-13 Score=121.52 Aligned_cols=203 Identities=16% Similarity=0.094 Sum_probs=160.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048749 186 VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN 265 (536)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 265 (536)
.....|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++......+.+..++..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 445678888889999999999999999998854 5678889999999999999999999999965444668899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 048749 266 GWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE 345 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 345 (536)
.|...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998875 4577889999999999999999999999998863 3467788999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 346 ALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
|...|+++.+... .+..++..+...|.+.|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999987643 368889999999999999999999999998865
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=5.9e-14 Score=129.58 Aligned_cols=150 Identities=13% Similarity=-0.033 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 202 HMVEEAIGVFDRRKEFGEL---DDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKR 278 (536)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 278 (536)
|++++|++.|+++.+.... .+..++..+...+...|++++|...|++.....+.+..+|..+...|...|++++|..
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 4556666666665554211 1233444455555555555555555555322223344555555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048749 279 FWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 279 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
.|++..+.. +.+..++..+...+...|++++|.+.++++.+. .|+.......+..+...|++++|...+++..
T Consensus 99 ~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 99 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 555554432 223444445555555555555555555555442 2222222222333334444555555554443
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=1.8e-12 Score=119.39 Aligned_cols=235 Identities=9% Similarity=0.037 Sum_probs=190.5
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CC----CCHHHHHHHHHHHHhcCC
Q 048749 129 INRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DL----VNEKTYGILLNRYAAAHM 203 (536)
Q Consensus 129 l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~----~~~~~~~~li~~~~~~g~ 203 (536)
.....++++.|+..|+.+.+.. +.+..++..+..+|.+.|++++|+..|++.. .+ ....+|..+...+...|+
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 3334579999999999999864 4567789999999999999999999999876 22 224558999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 204 VEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDI 283 (536)
Q Consensus 204 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 283 (536)
+++|++.|++..+.. +.+..++..+...+...|++++|...+++.....+.+..+|..+...+...+++++|...|++.
T Consensus 90 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 168 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKV 168 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999865 5567889999999999999999999999976666778888888883444556999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHcC-CCCC------HhhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 284 IKSKCEPDSVTYATFVNALTKKGK---LGTALRLFQAMWEKG-RKPD------VVTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 284 ~~~g~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
.+.. +.+...+..+...+...|+ +++|...+++..+.. -.|+ ..+|..+...|.+.|++++|.+.|+++
T Consensus 169 ~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 169 LELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8875 4457788888888888888 888999999887752 2233 257788889999999999999999999
Q ss_pred HHCCCCCCHHHHHHH
Q 048749 354 KNRGCLPNVTTYNSL 368 (536)
Q Consensus 354 ~~~g~~p~~~~~~~l 368 (536)
.+.... +...+..+
T Consensus 248 l~~~p~-~~~a~~~l 261 (272)
T 3u4t_A 248 LALDPT-NKKAIDGL 261 (272)
T ss_dssp HHHCTT-CHHHHHHH
T ss_pred HhcCcc-HHHHHHHh
Confidence 876422 44444443
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=1.4e-12 Score=125.64 Aligned_cols=232 Identities=9% Similarity=0.060 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHM-VEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
..+|+.+..++.+.|++++|+..|++.. .+.+..+|+.+..++...|+ +++|++.|++.++.. +.+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 5567777788888888888888888877 66778888888888888886 888888888888765 5567788888888
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHhHH
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTK-KGKLGTA 311 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a 311 (536)
+...|++++|...|++....-+.+..+|..+..++.+.|++++|+..|+++++.. +-+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 8888888888888888644446688889999999999999999999999998876 4577888888888888 6665777
Q ss_pred -----HHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------
Q 048749 312 -----LRLFQAMWEKGRKPDVVTCNCIIDALCFKK--RIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIK-------- 376 (536)
Q Consensus 312 -----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-------- 376 (536)
++.|++.+... +-+...|..+...+.+.| ++++|++.+.++ +. ...+...+..+...|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 47788887753 235678888888888887 688999999887 33 2346788888888888874
Q ss_pred -CHHHHHHHHHHH-HhcC
Q 048749 377 -RMETVYEYLDEM-EQKN 392 (536)
Q Consensus 377 -~~~~A~~~~~~m-~~~~ 392 (536)
..++|.++|+++ .+.+
T Consensus 332 ~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 332 DILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 258899999998 6644
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.53 E-value=5.1e-12 Score=121.60 Aligned_cols=240 Identities=9% Similarity=0.027 Sum_probs=154.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG 266 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 266 (536)
+...|..+...+...|++++|++.|++.++.. +.+..+|+.+...
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-----------------------------------P~~~~a~~~~g~~ 140 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-----------------------------------AANYTVWHFRRVL 140 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-----------------------------------TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----------------------------------ccCHHHHHHHHHH
Confidence 34556666666666666666666666665543 3344445555555
Q ss_pred HHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 048749 267 WCVLGN-VYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE 345 (536)
Q Consensus 267 ~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 345 (536)
+...|+ +++|+..|++.++.. +-+...|..+..++...|++++|+..|+++++.. +-+...|..+..++.+.|++++
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHH
Confidence 555554 666666666665554 3355666666666666777777777777776652 2255667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHH
Q 048749 346 ALEVLREMKNRGCLPNVTTYNSLIKHLCK-IKRMETV-----YEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVL 419 (536)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~A-----~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~ 419 (536)
|+..|+++.+.... +...|+.+..++.+ .|..++| ++.|++..+.. |
T Consensus 219 Al~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~----P---------------------- 271 (382)
T 2h6f_A 219 ELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV----P---------------------- 271 (382)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS----T----------------------
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC----C----------------------
Confidence 77777777765433 56777777777777 4554666 46777776654 2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHH
Q 048749 420 ERMERNGCKMSTDTYNVILKLYVNWD--CEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKG---------RLEDALSY 488 (536)
Q Consensus 420 ~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~A~~~ 488 (536)
-+...|+.+...+...| ++++|.+.+.++ +. -+.+...+..+...|.+.| ..++|+++
T Consensus 272 ---------~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~ 340 (382)
T 2h6f_A 272 ---------HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL 340 (382)
T ss_dssp ---------TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 25667777777777777 578888888877 32 2345677788888887764 25888888
Q ss_pred HHHH-HHCCCCCcHHH
Q 048749 489 FHEM-RLKGMVPEPRT 503 (536)
Q Consensus 489 ~~~m-~~~g~~p~~~t 503 (536)
++++ ++ +.|+..-
T Consensus 341 ~~~l~~~--~DP~r~~ 354 (382)
T 2h6f_A 341 CEILAKE--KDTIRKE 354 (382)
T ss_dssp HHHHHHT--TCGGGHH
T ss_pred HHHHHHH--hCchhHH
Confidence 8887 54 4566555
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=1.4e-12 Score=127.61 Aligned_cols=300 Identities=13% Similarity=0.063 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhc-----CC-CCCCHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD----LSAFQNLLLWLCRYKHVEVAETFFESEK-----NE-FGYDIK 258 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~-~~~~~~ 258 (536)
..+......+...|++++|+..|++..+.+ +.+ ..++..+...+...|+++.|...+++.. .+ .+....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 344444555555555555555555555542 122 2344455555555566655555555421 01 111234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HhHHHH
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKC-EPD----SVTYATFVNALTKKGK--------------------LGTALR 313 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~~a~~ 313 (536)
++..+...|...|++++|...+++..+... .++ ..++..+...|...|+ +++|.+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 566666677777777777777766654210 011 3466677777777787 788887
Q ss_pred HHHHHHHc----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 048749 314 LFQAMWEK----GRKP-DVVTCNCIIDALCFKKRIPEALEVLREMKNRGC-LPN----VTTYNSLIKHLCKIKRMETVYE 383 (536)
Q Consensus 314 ~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~A~~ 383 (536)
.+++..+. +..+ ...++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77766542 1111 134677788888899999999999888754210 112 3477888889999999999999
Q ss_pred HHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 048749 384 YLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCK-MSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGM 462 (536)
Q Consensus 384 ~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 462 (536)
.+++...... + .+.. ....++..+...|...|++++|...+++..+..-
T Consensus 249 ~~~~al~~~~----~--------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 249 YYKKTLLLAR----Q--------------------------LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HHHHHHHHHH----H--------------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----h--------------------------CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 9988765320 0 0000 0145777888999999999999999998765310
Q ss_pred -CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCc-HHHHHHHHHHHHhhhhhhh
Q 048749 463 -GPD----QRSYTVMIHGLYDKGRLEDALSYFHEMRLK----GMVPE-PRTGILVNDMNIKLKERGE 519 (536)
Q Consensus 463 -~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~l~~~~~~~~~~~~ 519 (536)
.++ ..++..+...|...|++++|.+++++..+. +-.+. ..++..+..++...|+...
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 112 457788888999999999999999987653 22222 3347778888888887743
No 56
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=3.3e-11 Score=113.19 Aligned_cols=218 Identities=8% Similarity=-0.002 Sum_probs=162.3
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048749 173 VELIQVFDEMP--DLVNEKTYGILLNRYAA-------AHMV-------EEAIGVFDRRKEFGELDDLSAFQNLLLWLCRY 236 (536)
Q Consensus 173 ~~A~~~~~~~~--~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 236 (536)
++|..+|++.. .+.+...|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 56667777766 56677777777776653 4664 88888888888731244566788888888888
Q ss_pred CCHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHhHHHHH
Q 048749 237 KHVEVAETFFESEKNEFGYDIK-TMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALT-KKGKLGTALRL 314 (536)
Q Consensus 237 ~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~a~~~ 314 (536)
|++++|..+|++.....+.+.. +|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|++++|.++
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888886543333443 78888888888899999999998888764 334445544433322 36899999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 315 FQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG-CLP--NVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 315 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
|+...+. .+-+...|..++..+.+.|++++|..+|++..... ..| ....|..++..+.+.|+.+.|..+++++.+.
T Consensus 192 ~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 192 FELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9988875 23367788888888889999999999999988863 344 4678888888888899999999999998876
Q ss_pred C
Q 048749 392 N 392 (536)
Q Consensus 392 ~ 392 (536)
.
T Consensus 271 ~ 271 (308)
T 2ond_A 271 F 271 (308)
T ss_dssp T
T ss_pred c
Confidence 5
No 57
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=3.1e-11 Score=119.73 Aligned_cols=366 Identities=14% Similarity=0.090 Sum_probs=222.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCH---HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRF---VELIQVFDEMPDLVNEKTYGILLNRYAAAH-----MV 204 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~ 204 (536)
.++++.|++.|+.+.+.+ +..++..+..+|...|+. ++|...|++.... +...+..+...+...+ ++
T Consensus 16 ~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHHT----CCTGGGTCC-----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred CCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCH
Confidence 469999999999998765 455666777888888888 8999999988854 7777888877666655 78
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 205 EEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEV---AETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWK 281 (536)
Q Consensus 205 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 281 (536)
++|++.|++..+.|. ++ .+..|...|...+..+. +.+.+..... ..+...+..|...|...+.++++.....
T Consensus 91 ~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 91 HEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 999999999998773 33 56667777776655433 3334433221 1244566777777877775544444332
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----CChHHHHHHHHHHH
Q 048749 282 DIIKSKCEPDSVTYATFVNALTKKG---KLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFK----KRIPEALEVLREMK 354 (536)
Q Consensus 282 ~m~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~ 354 (536)
.+.+.-...+...+..|...|...| +.++|++.|+...+.|.. +...+..+...|... +++++|++.|++..
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 2222111223337888888888899 899999999999888643 555556666677554 68999999999987
Q ss_pred HCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcC-----CCChHHHHHHHHHHCC
Q 048749 355 NRGCLPNVTTYNSLIKH-L--CKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLK-----KPEEVPWVLERMERNG 426 (536)
Q Consensus 355 ~~g~~p~~~~~~~li~~-~--~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~-----~~~~a~~~~~~~~~~~ 426 (536)
.| +...+..|... | ...+++++|+++|++..+.+ . |.....-..+...+ +.++|.+.++...
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~-~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa--- 314 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--Q-PRAELLLGKLYYEGKWVPADAKAAEAHFEKAV--- 314 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--C-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---
Confidence 33 55666666666 3 45789999999999998876 2 22222222222223 3334444444443
Q ss_pred CCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 048749 427 CKMSTDTYNVILKLYVN----WDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYD----KGRLEDALSYFHEMRLKGMV 498 (536)
Q Consensus 427 ~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 498 (536)
+-+...+..|...|.. ..+.++|...|++..+.|. ......|...|.. ..+.++|..+|+...+.|..
T Consensus 315 -~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 315 -GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp -TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred -CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 4577888888888876 4489999999999988763 3344555555553 46899999999999988742
Q ss_pred CcHHHHHHHHHHH--HhhhhhhhhhHHHHH
Q 048749 499 PEPRTGILVNDMN--IKLKERGEQGKKVIK 526 (536)
Q Consensus 499 p~~~t~~~l~~~~--~~~~~~~~a~~~~~~ 526 (536)
.....+..+. ....+..++.+...+
T Consensus 391 ---~a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 391 ---EANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp ---HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2222222222 223344455555554
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=2.9e-12 Score=125.77 Aligned_cols=209 Identities=14% Similarity=0.071 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCC-----------------HhHHHHH
Q 048749 257 IKTMNIILNGWCVLGNVYEAKRFWKDIIKS----K-CEPDSVTYATFVNALTKKGK-----------------LGTALRL 314 (536)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~ 314 (536)
..++..+...|...|++++|...+++..+. + .+....++..+...|...|+ +++|++.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 344555566666666666666666655432 1 01123456666667777777 7777777
Q ss_pred HHHHHHc----CCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHH
Q 048749 315 FQAMWEK----GRK-PDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCL-PN----VTTYNSLIKHLCKIKRMETVYEY 384 (536)
Q Consensus 315 ~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~~~~~~A~~~ 384 (536)
+++..+. +.. ....++..+...|...|++++|++.+++..+.... .+ ..++..+...|...|++++|.+.
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 7665442 111 12346777788888889999988888877543110 12 33778888899999999999999
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC---
Q 048749 385 LDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGC-KMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK--- 460 (536)
Q Consensus 385 ~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 460 (536)
+++...... +.+. .....++..+...|...|++++|...+++..+.
T Consensus 286 ~~~al~~~~------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 286 YKRTLALAV------------------------------ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHH------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------------------------HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 988765431 0000 012467778889999999999999999987753
Q ss_pred -CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 461 -GMG-PDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 461 -g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
+.. ....++..+...|...|++++|.+++++..+.
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111 11347778888999999999999999998864
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=7e-12 Score=118.90 Aligned_cols=275 Identities=13% Similarity=0.064 Sum_probs=178.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----C-CCCCHHH
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD----LSAFQNLLLWLCRYKHVEVAETFFESEKN-----E-FGYDIKT 259 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~-~~~~~~~ 259 (536)
.+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+++... + .+....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34445556666777777777777766653 222 24556666667777777777776665211 1 1123456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HhHHHHH
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKC-EPD----SVTYATFVNALTKKGK--------------------LGTALRL 314 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~~a~~~ 314 (536)
+..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 67777777888888888888777654210 112 3366777777788888 7888877
Q ss_pred HHHHHHc----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 048749 315 FQAMWEK----GRKP-DVVTCNCIIDALCFKKRIPEALEVLREMKNRGC-LPN----VTTYNSLIKHLCKIKRMETVYEY 384 (536)
Q Consensus 315 ~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~A~~~ 384 (536)
+++.... +..+ ...++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|.+.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7766542 1111 234677777888888888888888887753210 011 33677788888888999999988
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC---
Q 048749 385 LDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGC-KMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK--- 460 (536)
Q Consensus 385 ~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 460 (536)
+++...... ..+. .....++..+...|...|++++|...+++..+.
T Consensus 246 ~~~al~~~~------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 246 YKKTLLLAR------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HHHHHHHHH------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------------------------hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 888765320 0000 001456777888888999999999988887643
Q ss_pred -CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 461 -GMG-PDQRSYTVMIHGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 461 -g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
+-. ....++..+...|...|++++|..++++.++.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 111 11346777888888899999999999888764
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=1.9e-12 Score=126.58 Aligned_cols=300 Identities=12% Similarity=0.023 Sum_probs=209.1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-
Q 048749 153 SPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVN----EKTYGILLNRYAAAHMVEEAIGVFDRRKEF----GELD- 221 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~- 221 (536)
......+......+.+.|++++|...|++.. .+.+ ..+|..+...+...|++++|+..|++..+. +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3455667777777888888888888887766 3334 346777778888888888888888776432 2112
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC---C---CCCHHHHHHHHHHHHhcCC--------------------HHH
Q 048749 222 DLSAFQNLLLWLCRYKHVEVAETFFESEKNE---F---GYDIKTMNIILNGWCVLGN--------------------VYE 275 (536)
Q Consensus 222 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~---~~~~~~~~~li~~~~~~g~--------------------~~~ 275 (536)
...++..+...+...|++++|...+++.... . .....++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2446677777888888888888887763211 0 1124477888888888898 888
Q ss_pred HHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCChHH
Q 048749 276 AKRFWKDIIKS----KCEP-DSVTYATFVNALTKKGKLGTALRLFQAMWEKGR-KPD----VVTCNCIIDALCFKKRIPE 345 (536)
Q Consensus 276 A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~ 345 (536)
|...+++..+. +..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 98888876542 1111 235678888899999999999999998876411 112 2378888889999999999
Q ss_pred HHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHH
Q 048749 346 ALEVLREMKNR----GCLP-NVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLE 420 (536)
Q Consensus 346 A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~ 420 (536)
|...+++..+. +..+ ...++..+...|...|++++|.+.+.+..+...
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--------------------------- 298 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ--------------------------- 298 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH---------------------------
Confidence 99999987642 1111 156788888999999999999999998865420
Q ss_pred HHHHCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCH
Q 048749 421 RMERNGC-KMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK----GMGP-DQRSYTVMIHGLYDKGRL 482 (536)
Q Consensus 421 ~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~ 482 (536)
+.+. .....++..+...|...|++++|...+++..+. +..+ ...++..+...+...|+.
T Consensus 299 ---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 299 ---ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp ---HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 0000 012457778889999999999999999987643 2111 234566677777777765
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=2.9e-12 Score=125.76 Aligned_cols=271 Identities=13% Similarity=0.036 Sum_probs=168.0
Q ss_pred HHHHHHHccCCHHHHHHHHHhCC--CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHH
Q 048749 161 AILDVLGRARRFVELIQVFDEMP--DLVNE----KTYGILLNRYAAAHMVEEAIGVFDRRKEF----GE-LDDLSAFQNL 229 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~~~--~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~l 229 (536)
.+...+...|++++|+..|++.. .+.+. ..|..+...|...|++++|++.|++..+. +- +....++..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 33444445555555555555444 22222 24445555555555555555555544332 10 1123345555
Q ss_pred HHHHHhcCCHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC
Q 048749 230 LLWLCRYKHVEVAETFFESEKNE------FGYDIKTMNIILNGWCVLGN-----------------VYEAKRFWKDIIKS 286 (536)
Q Consensus 230 l~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~ 286 (536)
...+...|++++|...+++.... .+....++..+...|...|+ +++|.+.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55556666666666655552110 11234456677777777777 77777777765432
Q ss_pred ----CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048749 287 ----KC-EPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRK-PD----VVTCNCIIDALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 287 ----g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (536)
+. .....++..+...|...|++++|++.+++..+.... ++ ..++..+...|...|++++|...+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11 112346777888888899999999988887764110 11 236788888999999999999999887543
Q ss_pred CCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCH
Q 048749 357 GCL-----PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMST 431 (536)
Q Consensus 357 g~~-----p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~ 431 (536)
... ....++..+...|...|++++|.+.+++..+.. ++ . .......
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~-----------------------~--~~~~~~~ 343 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA----QE-----------------------L--GDRIGEA 343 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HH-----------------------H--TCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HH-----------------------C--CChHHHH
Confidence 110 125678888899999999999999999886542 00 0 0001124
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 048749 432 DTYNVILKLYVNWDCEDKVRHTWEEMEKK 460 (536)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 460 (536)
.++..+...|...|++++|.+.+++..+.
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57788899999999999999999988764
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=2.9e-11 Score=113.59 Aligned_cols=215 Identities=8% Similarity=0.022 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc-------cCCH-------HHHHHHHHhCC---CCCCHHHHHHHHHHHH
Q 048749 137 EAAYTFFKWVSREGDYSPGSNVFNAILDVLGR-------ARRF-------VELIQVFDEMP---DLVNEKTYGILLNRYA 199 (536)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~---~~~~~~~~~~li~~~~ 199 (536)
+.|+.+|+.+.... +.++..|..++..+.. .|++ ++|..+|++.. .+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 67888999988863 6688899998888763 5886 89999999876 3456778999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 048749 200 AAHMVEEAIGVFDRRKEFGELDD-LS-AFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC-VLGNVYEA 276 (536)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A 276 (536)
+.|++++|.++|++..+. .|+ .. +|..++..+.+.|++++|..+|++.....+.+...|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999985 343 43 89999999999999999999999965544556666655444432 36999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCC--CHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 277 KRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKG-RKP--DVVTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 277 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
..+|+...+.. +-+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998764 4467889999999999999999999999999963 455 3568888999999999999999999999
Q ss_pred HHC
Q 048749 354 KNR 356 (536)
Q Consensus 354 ~~~ 356 (536)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=1.6e-11 Score=105.72 Aligned_cols=163 Identities=15% Similarity=0.069 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
+.+|..+...|.+.|++++|++.|++.. .+.+..+|..+..+|.+.|++++|++.+....... +.+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 4445555555555555555555555444 34444445555555555555555555554444432 22333444444444
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 313 (536)
...++++.|...+.......+.+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|++
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHH
Confidence 444444444444444322223344444444444444444444444444444332 2233444444444444444444444
Q ss_pred HHHHHHH
Q 048749 314 LFQAMWE 320 (536)
Q Consensus 314 ~~~~m~~ 320 (536)
.|++..+
T Consensus 163 ~~~~al~ 169 (184)
T 3vtx_A 163 YFKKALE 169 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444443
No 64
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.41 E-value=6.8e-12 Score=124.46 Aligned_cols=346 Identities=11% Similarity=0.028 Sum_probs=220.1
Q ss_pred HHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 048749 161 AILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMV---EEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYK 237 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 237 (536)
.+...+.+.|++++|.+.|++.....+...+..+...|...|+. ++|++.|++..+. +...+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 36677888999999999999887333445677777778788888 9999999988864 5566667777555555
Q ss_pred -----CHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 238 -----HVEVAETFFESE-KNEFGYDIKTMNIILNGWCVLGNVY---EAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL 308 (536)
Q Consensus 238 -----~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 308 (536)
+.++|...|++. ..+ +...+..|...|...+..+ ++.+.+....+.| +...+..+...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 788999999984 433 2237777888777655543 4555565555555 344666777888888866
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHH
Q 048749 309 GTALRLFQAMWEKGRKPDVVTCNCIIDALCFKK---RIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKI----KRMETV 381 (536)
Q Consensus 309 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----~~~~~A 381 (536)
+++......+.+.-...++..+..+...|.+.| +.++|++.|++..+.|.. +...+..|...|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 555554433333322234448888888999999 999999999999988744 666556677777655 799999
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHH-H--HhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----ChhHHHHH
Q 048749 382 YEYLDEMEQKNGSCLPNEITFNYL-L--KSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWD-----CEDKVRHT 453 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~~~~~l-l--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~ 453 (536)
+++|++.. .+ ...-...+..+ . ...++.+++.+.++...+.| +...+..|...|. .| ++++|...
T Consensus 237 ~~~~~~aa-~g--~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 237 QALLEKIA-PG--YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHHG-GG--STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHHc-CC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 99999998 44 32323333333 2 23355677888888888877 6778888888887 55 99999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh----hhhhhhhhHHHH
Q 048749 454 WEEMEKKGMGPDQRSYTVMIHGLYD----KGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIK----LKERGEQGKKVI 525 (536)
Q Consensus 454 ~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~----~~~~~~a~~~~~ 525 (536)
|++.. .| +...+..|-..|.. ..++++|..+|++..+.|. +.....|..++.. ..+..+|...+.
T Consensus 310 ~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 310 FEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 99887 43 67777777766665 3499999999999988764 3334445555543 234456666665
Q ss_pred Hhhhcc
Q 048749 526 KLTSLG 531 (536)
Q Consensus 526 ~~~~~g 531 (536)
+-.+.|
T Consensus 383 ~A~~~g 388 (452)
T 3e4b_A 383 LAKAQD 388 (452)
T ss_dssp HHHTTC
T ss_pred HHHHCC
Confidence 544443
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=4.5e-11 Score=102.85 Aligned_cols=166 Identities=10% Similarity=-0.035 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG 266 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 266 (536)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+.......+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45567777777777777777777777766654 44556666666666666666666666666433334455556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHH
Q 048749 267 WCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEA 346 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 346 (536)
+...++++.|...+.+..+.. +.+...+..+...+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 666666666666666655543 3345555556666666666666666666655542 22445555555666666666666
Q ss_pred HHHHHHHHH
Q 048749 347 LEVLREMKN 355 (536)
Q Consensus 347 ~~~~~~m~~ 355 (536)
++.|++..+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665554
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=6.8e-12 Score=119.01 Aligned_cols=260 Identities=15% Similarity=0.136 Sum_probs=197.3
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHhCC--------CCCCHHHHHHHHHHH
Q 048749 131 RYRFDWEAAYTFFKWVSREGDYSPG----SNVFNAILDVLGRARRFVELIQVFDEMP--------DLVNEKTYGILLNRY 198 (536)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~li~~~ 198 (536)
...|+++.|+..|+.+.+.. +.+ ..++..+...+...|++++|.+.+++.. .+....++..+...+
T Consensus 16 ~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 93 (338)
T 3ro2_A 16 CKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 34579999999999998864 334 4678899999999999999999998765 112245788889999
Q ss_pred HhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHhcC--
Q 048749 199 AAAHMVEEAIGVFDRRKEFGE-LDD----LSAFQNLLLWLCRYKH--------------------VEVAETFFESEKN-- 251 (536)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~-- 251 (536)
...|++++|++.+++..+... .++ ..++..+...+...|+ ++.|...+++...
T Consensus 94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~ 173 (338)
T 3ro2_A 94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV 173 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988765321 122 3477788888999999 9999988877311
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 048749 252 ----EFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK----C-EPDSVTYATFVNALTKKGKLGTALRLFQAMWEKG 322 (536)
Q Consensus 252 ----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 322 (536)
..+....++..+...|...|++++|...+++..+.. . .....++..+...+...|++++|...+++..+..
T Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 253 (338)
T 3ro2_A 174 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 253 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 112234578888899999999999999999876531 1 1113478888899999999999999999887641
Q ss_pred C-CCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 323 R-KPD----VVTCNCIIDALCFKKRIPEALEVLREMKNR----GCL-PNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 323 ~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
. ..+ ..++..+...|...|++++|...+++..+. +.. ....++..+...|.+.|++++|.+.+++..+..
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 254 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 1 111 456778888999999999999999987543 111 114577788899999999999999999987754
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=1e-11 Score=123.94 Aligned_cols=210 Identities=14% Similarity=0.024 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRF-VELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVF 211 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 211 (536)
..+.+++.++...... +.+...+..+...|...|++ ++|++.|++.. .+.+...|..+...|...|++++|++.|
T Consensus 83 ~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4666777777666543 45777888888888888888 88888888776 6667778888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 048749 212 DRRKEFGELDDLSAFQNLLLWLCRY---------KHVEVAETFFESEKNEFGYDIKTMNIILNGWCVL--------GNVY 274 (536)
Q Consensus 212 ~~m~~~g~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 274 (536)
++..+.. |+...+..+...+... |++++|...+++.....+.+...|..+..+|... |+++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8887654 6667777777777777 7777777777664333345566666666666666 6666
Q ss_pred HHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 048749 275 EAKRFWKDIIKSKCE---PDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVL 350 (536)
Q Consensus 275 ~A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 350 (536)
+|...|++..+.. + -+...|..+..+|...|++++|++.|++..+.. +.+...+..+..++...|++++|++.+
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666543 2 355666666666666666666666666665542 223445555555566666666655544
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=3.4e-11 Score=116.97 Aligned_cols=233 Identities=10% Similarity=0.065 Sum_probs=162.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCC---CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 048749 229 LLLWLCRYKHVEVAETFFESEKNE---FGY---DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK--C----EPDSVTYA 296 (536)
Q Consensus 229 ll~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~~~~~~~~ 296 (536)
....+...|++++|...+++.... .+. ...++..+...|...|++++|...+++..+.- . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566777888888777774221 111 33567778888888888888888888776531 1 11235677
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 048749 297 TFVNALTKKGKLGTALRLFQAMWEKGR-KPD----VVTCNCIIDALCFKKRIPEALEVLREMKNR----GC-LPNVTTYN 366 (536)
Q Consensus 297 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~ 366 (536)
.+...|...|++++|++.+++..+... .++ ..++..+...|...|++++|++.|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888889999999999999888775411 111 246788889999999999999999988662 22 33467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 048749 367 SLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDC 446 (536)
Q Consensus 367 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 446 (536)
.+...|.+.|++++|.+.+++..+... +.+-+.....+..+...|...|+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~------------------------------~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQ------------------------------KAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH------------------------------HHTCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH------------------------------HcCCHHHHHHHHHHHHHHhCCCc
Confidence 899999999999999999998765320 00101112335667778888888
Q ss_pred ---hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 447 ---EDKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 447 ---~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
+++|..++++. +..|+ ...+..+...|...|++++|.+++++..+
T Consensus 319 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 319 EEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666655 22333 34667788889999999999999998765
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=2.3e-11 Score=121.48 Aligned_cols=217 Identities=11% Similarity=0.007 Sum_probs=167.6
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 048749 239 VEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNV-YEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQA 317 (536)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 317 (536)
++.+...++......+.+...+..+...|...|++ ++|++.|++..+.. +-+..+|..+...|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455555554444455777777777788888888 88888888877664 34577788888888888888888888888
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHH
Q 048749 318 MWEKGRKPDVVTCNCIIDALCFK---------KRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKI--------KRMET 380 (536)
Q Consensus 318 m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------~~~~~ 380 (536)
..+. .|+...+..+...|... |++++|++.|++..+.... +...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 8774 46667777788888888 8999999999988776432 678888888888888 88999
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 048749 381 VYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK 460 (536)
Q Consensus 381 A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 460 (536)
|.+.|++..+.. |. ..-+...|..+..+|...|++++|.+.|++..+.
T Consensus 240 A~~~~~~al~~~----p~----------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 240 ALSAYAQAEKVD----RK----------------------------ASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHC----GG----------------------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC----CC----------------------------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999988754 21 0136788999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 461 GMGPDQRSYTVMIHGLYDKGRLEDALSYFHEM 492 (536)
Q Consensus 461 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 492 (536)
. +-+...+..+...+...|++++|++.+.++
T Consensus 288 ~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 288 D-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp C-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 235677888889999999999998866543
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=7.7e-09 Score=106.29 Aligned_cols=416 Identities=8% Similarity=-0.006 Sum_probs=270.2
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHh--ccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHh
Q 048749 107 GEIEKALNQCELTLTDDLIVNVINR--YRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARR---FVELIQVFDE 181 (536)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~l~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~ 181 (536)
..+++.+...+. +...-...+.. ..++.+.+..+|+.+... ++.+...|...+..-.+.|. ++.+..+|++
T Consensus 53 ~~lE~~l~~np~--d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 53 GKLNDMIEEQPT--DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHCcC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 567777777654 55555555443 236899999999999987 67889999999999999999 9999999999
Q ss_pred CC-CC---CCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHHh---------cC
Q 048749 182 MP-DL---VNEKTYGILLNRYAAAHMV--------EEAIGVFDRRKE-FGE-LD-DLSAFQNLLLWLCR---------YK 237 (536)
Q Consensus 182 ~~-~~---~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~~-~~~~~~~ll~~~~~---------~~ 237 (536)
.. .. +++..|..-+....+.++. +...++|+.... .|. .+ +...|...+..... .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 88 44 8999999988877665543 344578877554 466 55 45677777765442 34
Q ss_pred CHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcC-------------CHHHHHHHHHHHHH--CCCC-----------
Q 048749 238 HVEVAETFFESEKNEFGY--DIKTMNIILNGWCVLG-------------NVYEAKRFWKDIIK--SKCE----------- 289 (536)
Q Consensus 238 ~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g-------------~~~~A~~~~~~m~~--~g~~----------- 289 (536)
+++.+..+|+.... +|. -..+|......--..+ +++.|...+.++.. .++.
T Consensus 209 ~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 209 RVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred HHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 57788999998653 232 2234443332221111 12334445544322 1211
Q ss_pred ----C-----C---HHHHHHHHHHHHhcC-------CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHH-HH
Q 048749 290 ----P-----D---SVTYATFVNALTKKG-------KLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEAL-EV 349 (536)
Q Consensus 290 ----~-----~---~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~~ 349 (536)
| + ...|...+.---..+ ..+.+..+|++.+.. ++-....|-..+..+.+.|+.++|. ++
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 0 134555554333322 123456678887775 4446777888888888889988896 99
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCCCc------------HHHHHHHHHh--
Q 048749 350 LREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNG-------SCLPN------------EITFNYLLKS-- 408 (536)
Q Consensus 350 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-------~~~p~------------~~~~~~ll~~-- 408 (536)
|++.... ++.+...|-..+....+.|++++|.++|+++..... ...|+ ...|...+..
T Consensus 367 l~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 367 LKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 9988764 344666777788888889999999999998876410 00131 1233333332
Q ss_pred -cCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 409 -LKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNW-DCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDAL 486 (536)
Q Consensus 409 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 486 (536)
.+..+.|..+|+...+.........|...+..-.+. ++.+.|..+|+...+. ++-+...|...+.-....|+.+.|.
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHH
Confidence 355667888888887751112233443333333344 4589999999988875 3446677778888888889999999
Q ss_pred HHHHHHHHCCCCC-cH-HHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 048749 487 SYFHEMRLKGMVP-EP-RTGILVNDMNIKLKERGEQGKKVIKLTSL 530 (536)
Q Consensus 487 ~~~~~m~~~g~~p-~~-~t~~~l~~~~~~~~~~~~a~~~~~~~~~~ 530 (536)
.+|++.+.....+ +. ..+...+..-.+.|+.+.+.++..++.+.
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999988764322 23 33777777777888888888888887654
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=1.8e-10 Score=98.81 Aligned_cols=163 Identities=13% Similarity=0.081 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
...+..+...+...|++++|...|+++. .+.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3456677777788888888888888776 45567777778888888888888888888777654 44566666666677
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 313 (536)
...|++++|...++......+.+...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777766443334556666666666666677777776666666553 3345566666666666666666666
Q ss_pred HHHHHHH
Q 048749 314 LFQAMWE 320 (536)
Q Consensus 314 ~~~~m~~ 320 (536)
.++...+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 72
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.34 E-value=1.8e-08 Score=103.54 Aligned_cols=412 Identities=10% Similarity=0.019 Sum_probs=271.3
Q ss_pred HHHHHHHHHhhCCCC-ChhHHHH----HHhhcCCCCCHHHHHHHHHh--ccCC---HHHHHHHHHHHHhCCCCCCCHHHH
Q 048749 90 IAINVQNILKTCSVS-TKGEIEK----ALNQCELTLTDDLIVNVINR--YRFD---WEAAYTFFKWVSREGDYSPGSNVF 159 (536)
Q Consensus 90 ~~~~~~~~l~~~~~~-~~~~~~~----~l~~~~~~~~~~~~~~~l~~--~~~~---~~~a~~~~~~~~~~~~~~~~~~~~ 159 (536)
+...|...+...... ....++. ++...+ .+...-...+.. ..++ .+.+..+|+.+.......|++..|
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP--~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP--LMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 355666666543222 2233333 333333 334444333322 2346 999999999999863224899999
Q ss_pred HHHHHHHHccCCH--------HHHHHHHHhCC------CCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHH
Q 048749 160 NAILDVLGRARRF--------VELIQVFDEMP------DLVNEKTYGILLNRYA---------AAHMVEEAIGVFDRRKE 216 (536)
Q Consensus 160 ~~li~~~~~~g~~--------~~A~~~~~~~~------~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~ 216 (536)
...+....+.++. +...++|+... ...+...|...+.... ..++++.+.++|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 9998877765554 34557888643 2345678988887654 34467889999999986
Q ss_pred cCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHh---cCC----CCC-------------------CH
Q 048749 217 FGELDDLSAFQNLLLWLCR-------------YKHVEVAETFFESE---KNE----FGY-------------------DI 257 (536)
Q Consensus 217 ~g~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~---~~~----~~~-------------------~~ 257 (536)
.....-..+|......-.. ...++.|...+..+ ..+ ++. ..
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 3222223344322221111 11233444444432 111 111 12
Q ss_pred HHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH-HHHHHHHHcCCCCCHhh
Q 048749 258 KTMNIILNGWCVLG-------NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTAL-RLFQAMWEKGRKPDVVT 329 (536)
Q Consensus 258 ~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~g~~p~~~~ 329 (536)
..|...+.---..+ ..+.+..+|++....- +-+...|...+.-+...|+.++|. ++|++.... ++.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 45666665433322 1334567788887653 457788888888888999999997 999999874 5556667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 330 CNCIIDALCFKKRIPEALEVLREMKNRG---------CLPN------------VTTYNSLIKHLCKIKRMETVYEYLDEM 388 (536)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~~~~~li~~~~~~~~~~~A~~~~~~m 388 (536)
|...+...-+.|++++|.++|+.+.+.. -.|+ ..+|...+....+.|..+.|..+|..+
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7888888999999999999999987631 0132 346888888888899999999999999
Q ss_pred Hhc-CCCCCCcHHHHHHHHHhc-CC-CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-
Q 048749 389 EQK-NGSCLPNEITFNYLLKSL-KK-PEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGP- 464 (536)
Q Consensus 389 ~~~-~~~~~p~~~~~~~ll~~~-~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 464 (536)
.+. .. ..+......+.+... ++ .+.|.++|+...+. ++-+...+...++.....|+.+.|..+|+........+
T Consensus 461 ~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 461 RRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 876 31 334444444555433 33 67899999988875 45567778889998889999999999999998864322
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 048749 465 -DQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVND 509 (536)
Q Consensus 465 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~ 509 (536)
....|...+.--.+.|+.+.+..+.++|.+. .|+.....++..
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHH
Confidence 3467888888888999999999999999985 455444444443
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=4.1e-11 Score=112.42 Aligned_cols=237 Identities=11% Similarity=0.071 Sum_probs=168.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhCCC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------
Q 048749 154 PGSNVFNAILDVLGRARRFVELIQVFDEMPD----------LVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEF------ 217 (536)
Q Consensus 154 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 217 (536)
.+..++..+...+...|++++|...|+++.. +....++..+...|...|++++|++.|++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3467889999999999999999999988761 123456888999999999999999999998764
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 048749 218 GE-LDDLSAFQNLLLWLCRYKHVEVAETFFESEKN--------EFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS-- 286 (536)
Q Consensus 218 g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 286 (536)
+- +....++..+...+...|++++|...+++... ..+....++..+...|...|++++|.++++++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 22 23356788888999999999999999988422 12335567888999999999999999999998764
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-------CCCCCHh-------hHHHHHHHHHhcCChHHHH
Q 048749 287 ----KCEP-DSVTYATFVNALTKKGKLGTALRLFQAMWEK-------GRKPDVV-------TCNCIIDALCFKKRIPEAL 347 (536)
Q Consensus 287 ----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~-------~~~~li~~~~~~g~~~~A~ 347 (536)
+..| ...++..+...|...|++++|.+.++++.+. ...+... .+..+...+...+.+.+|.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 2122 3457888889999999999999999998863 1122211 2222333444556666777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 348 EVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 348 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
..+....... ..+..++..+...|.+.|++++|.+.|++..+.
T Consensus 265 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 265 GWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7777665432 224677888999999999999999999988764
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=4.8e-11 Score=111.94 Aligned_cols=247 Identities=10% Similarity=0.024 Sum_probs=153.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----
Q 048749 254 GYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS-------KCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK----- 321 (536)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 321 (536)
+.+..++..+...|...|++++|..+++++.+. ..+....++..+...|...|++++|...+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345667888888888888888888888887762 22334566778888888899999999888887764
Q ss_pred -CC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 322 -GR-KPDVVTCNCIIDALCFKKRIPEALEVLREMKNR------GCLP-NVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 322 -g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
+- .....++..+...|...|++++|...|+++.+. +..| ....+..+...|...|++++|.++++++.+..
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22 223557788888899999999999999988653 2222 35667888889999999999999999886641
Q ss_pred CCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-------CCCCC
Q 048749 393 GSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK-------GMGPD 465 (536)
Q Consensus 393 ~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~ 465 (536)
. .......+....++..+...|...|++++|.+.++++.+. ...+.
T Consensus 184 ~---------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 184 Q---------------------------TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp H---------------------------HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred H---------------------------HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 0 0000000112345667777777888888888888777642 11111
Q ss_pred H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhhhhhhhhhHHHHHhhh
Q 048749 466 Q-------RSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVP-EPRTGILVNDMNIKLKERGEQGKKVIKLTS 529 (536)
Q Consensus 466 ~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~~~~~~a~~~~~~~~~ 529 (536)
. ..+..+...+...+.+.+|...++..... .| +..++..+..++.+.|+.++|.+.+.+..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 11222223333445555555555555432 23 234466777777777777777777776543
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=5.7e-10 Score=95.59 Aligned_cols=166 Identities=10% Similarity=0.022 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 224 SAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALT 303 (536)
Q Consensus 224 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 303 (536)
..+..+...+...|++++|...++......+.+..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455566667777777777777777655555567777777777777888888888887776654 345667777777788
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 304 KKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYE 383 (536)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~ 383 (536)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888777652 33566777777788888888888888888766532 356777778888888888888888
Q ss_pred HHHHHHhcC
Q 048749 384 YLDEMEQKN 392 (536)
Q Consensus 384 ~~~~m~~~~ 392 (536)
.++++.+..
T Consensus 166 ~~~~~~~~~ 174 (186)
T 3as5_A 166 HFKKANELD 174 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcC
Confidence 888776543
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=4e-10 Score=109.16 Aligned_cols=232 Identities=9% Similarity=0.053 Sum_probs=159.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCC---CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCC-CHHHHH
Q 048749 229 LLLWLCRYKHVEVAETFFESEKNE---FG---YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK-----CEP-DSVTYA 296 (536)
Q Consensus 229 ll~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~~-~~~~~~ 296 (536)
....+...|++++|...|++.... .+ ....++..+...|...|+++.|...+++..+.. ..+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344566788888888888874321 11 124567788888888999999988888876521 111 245677
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 048749 297 TFVNALTKKGKLGTALRLFQAMWEK----GRKP-DVVTCNCIIDALCFKKRIPEALEVLREMKN-----RGCLPNVTTYN 366 (536)
Q Consensus 297 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 366 (536)
.+...|...|++++|.+.|++..+. +..+ ...++..+...|...|++++|++.|++..+ .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 8888889999999999988887763 1111 234677788889999999999999998876 3222 367788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 048749 367 SLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDC 446 (536)
Q Consensus 367 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 446 (536)
.+...|.+.|++++|...+++..+.... .+.+.....+..+...|...|+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~------------------------------~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITA------------------------------RSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCT------------------------------TCCSCHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------------------cCCHHHHHHHHHHHHHHhCCCc
Confidence 8888999999999999999988765410 0111122344555566666777
Q ss_pred ---hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 447 ---EDKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 447 ---~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
+++|...+++ .+..|+ ...+..+...|...|++++|..+|++..+
T Consensus 316 ~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 316 ERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5566666554 222222 34556777888889999999999888764
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=2.4e-10 Score=111.01 Aligned_cols=234 Identities=9% Similarity=-0.019 Sum_probs=173.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CC-----CHhhHH
Q 048749 263 ILNGWCVLGNVYEAKRFWKDIIKS----KCEP-DSVTYATFVNALTKKGKLGTALRLFQAMWEKGR-KP-----DVVTCN 331 (536)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p-----~~~~~~ 331 (536)
....+...|++++|...|++..+. +-.+ ...++..+...|...|++++|...+++..+.-. .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677899999999999998764 1111 246788889999999999999999998876411 11 135678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 048749 332 CIIDALCFKKRIPEALEVLREMKNRGCL-PN----VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLL 406 (536)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll 406 (536)
.+...|...|++++|.+.|++..+.... ++ ..++..+...|...|++++|.+.|.+..+..
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-------------- 254 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF-------------- 254 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------
Confidence 8889999999999999999987643110 12 3478888999999999999999999876521
Q ss_pred HhcCCCChHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC
Q 048749 407 KSLKKPEEVPWVLERMERNGC-KMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK----GMGPDQRSYTVMIHGLYDKGR 481 (536)
Q Consensus 407 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~ 481 (536)
.+.+. +....++..+...|.+.|++++|...+++..+. +-+.....+..+...+...|+
T Consensus 255 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 255 ----------------EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp ----------------HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred ----------------HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 11121 223567888999999999999999999987653 111112335667777888898
Q ss_pred ---HHHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHhhhhhhhhhHHHHHhhh
Q 048749 482 ---LEDALSYFHEMRLKGMVPEP-RTGILVNDMNIKLKERGEQGKKVIKLTS 529 (536)
Q Consensus 482 ---~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~~~~~~a~~~~~~~~~ 529 (536)
+++|+.++++. +..|+. ..+..+...+...|+.++|.+.+.+..+
T Consensus 319 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 319 EEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777765 344443 3478899999999999999999988643
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.27 E-value=1.8e-09 Score=104.26 Aligned_cols=271 Identities=11% Similarity=0.001 Sum_probs=173.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhcC---CCC-C--CHHHHHH
Q 048749 193 ILLNRYAAAHMVEEAIGVFDRRKEFGELDDLS----AFQNLLLWLCRYKHVEVAETFFESEKN---EFG-Y--DIKTMNI 262 (536)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~-~--~~~~~~~ 262 (536)
.....+...|++++|...+++.....-..+.. ++..+...+...|+++.|...+++... ... + ...++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445556777777777777766543222222 345555666777788777777776311 111 1 1233566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC--C--CHhhHH
Q 048749 263 ILNGWCVLGNVYEAKRFWKDIIKS----KCE--P-DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRK--P--DVVTCN 331 (536)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p--~~~~~~ 331 (536)
+...+...|++++|...+++..+. +.. | ...++..+...+...|++++|...+++....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777788888998888888877642 221 2 2345666777888899999999999888764221 1 234567
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q 048749 332 CIIDALCFKKRIPEALEVLREMKNRGCLPN-VTTYN-----SLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYL 405 (536)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~-----~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~l 405 (536)
.+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+.+...... .+.
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~--~~~------- 249 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF--ANN------- 249 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC--TTC-------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC--Ccc-------
Confidence 778888899999999999988764311111 11222 233447788999999999888754331 000
Q ss_pred HHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcC
Q 048749 406 LKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK----GMGPDQ-RSYTVMIHGLYDKG 480 (536)
Q Consensus 406 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g 480 (536)
......+..+...+...|++++|...+++.... |..++. ..+..+..++...|
T Consensus 250 ----------------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 307 (373)
T 1hz4_A 250 ----------------------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 307 (373)
T ss_dssp ----------------------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhC
Confidence 011234556777888889999998888877542 222222 25566667788889
Q ss_pred CHHHHHHHHHHHHH
Q 048749 481 RLEDALSYFHEMRL 494 (536)
Q Consensus 481 ~~~~A~~~~~~m~~ 494 (536)
+.++|...+++...
T Consensus 308 ~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 308 RKSDAQRVLLDALK 321 (373)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999988888764
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.25 E-value=4.8e-09 Score=101.25 Aligned_cols=265 Identities=9% Similarity=-0.022 Sum_probs=188.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHhCC----CCCCH----HHHHH
Q 048749 126 VNVINRYRFDWEAAYTFFKWVSREGDYSPGS----NVFNAILDVLGRARRFVELIQVFDEMP----DLVNE----KTYGI 193 (536)
Q Consensus 126 ~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~----~~~~~ 193 (536)
...+....++++.|+..++.+..... ..+. .+++.+...+...|++++|...+++.. ...+. .++..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33444456899999999999887541 2222 256777788889999999999998876 22222 33667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhc---CCCC--CCHHHHH
Q 048749 194 LLNRYAAAHMVEEAIGVFDRRKEF----GEL--D-DLSAFQNLLLWLCRYKHVEVAETFFESEK---NEFG--YDIKTMN 261 (536)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~--~~~~~~~ 261 (536)
+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++.. .... ....++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 788899999999999999887643 222 2 23456678888999999999999998831 2111 1345678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHhcCCHhHHHHHHHHHHHcCCCCC---HhhHHH
Q 048749 262 IILNGWCVLGNVYEAKRFWKDIIKSKCEPD-SVTYA-----TFVNALTKKGKLGTALRLFQAMWEKGRKPD---VVTCNC 332 (536)
Q Consensus 262 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ 332 (536)
.+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 888899999999999999998875321111 11222 233447789999999999988776432211 224567
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 333 IIDALCFKKRIPEALEVLREMKNR----GCLPNV-TTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
+...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+.+....
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 788899999999999999987532 222222 35666777888999999999999987654
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=2.3e-10 Score=118.98 Aligned_cols=166 Identities=11% Similarity=0.026 Sum_probs=144.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048749 153 SPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLL 230 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 230 (536)
+.+..+|+.+..+|.+.|++++|++.|++.. .+.+..+|..+..+|.+.|++++|++.|++.++.. +.+..+|..+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3457789999999999999999999999887 67788899999999999999999999999998875 55688999999
Q ss_pred HHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 048749 231 LWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGT 310 (536)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 310 (536)
.++.+.|++++|.+.|++..+--+.+..+|+.+...|.+.|++++|++.|++..+.. +-+...|..+..++...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999998544345678899999999999999999999999998875 4467889999999999999999
Q ss_pred HHHHHHHHHH
Q 048749 311 ALRLFQAMWE 320 (536)
Q Consensus 311 a~~~~~~m~~ 320 (536)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888887765
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=6.9e-10 Score=115.40 Aligned_cols=167 Identities=11% Similarity=0.041 Sum_probs=146.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048749 186 VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN 265 (536)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 265 (536)
.+..+|+.+...|.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|...|++..+..+.+..+|+.+..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 356789999999999999999999999999875 5568899999999999999999999999954444667899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 048749 266 GWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE 345 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 345 (536)
+|.+.|++++|++.|++..+.. +-+..+|..+..+|...|++++|++.|++..+.. +-+...+..+..+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999998875 4567899999999999999999999999999863 2257789999999999999999
Q ss_pred HHHHHHHHHH
Q 048749 346 ALEVLREMKN 355 (536)
Q Consensus 346 A~~~~~~m~~ 355 (536)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888754
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.16 E-value=5.6e-09 Score=93.06 Aligned_cols=195 Identities=12% Similarity=0.018 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG 266 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 266 (536)
|...|......+...|++++|++.|++..+...+++...+..+..++...|++++|...+++.....+.+..+|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 34455555555555555555555555555544224555555555555555666666655555433323345555556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC---HhhHHHHHHH
Q 048749 267 WCVLGNVYEAKRFWKDIIKSKCEPDS-------VTYATFVNALTKKGKLGTALRLFQAMWEKGRKPD---VVTCNCIIDA 336 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~ 336 (536)
|...|++++|...+++..+.. +.+. ..|..+...+...|++++|++.|++..+. .|+ ...+..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 666666666666666655543 2223 33555555556666666666666666553 333 3344444444
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 337 LCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
|...| ..+++++...+. .+...|.... ....+.+++|...|++..+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 44332 233344433321 1233333322 223345666777777666644
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.14 E-value=6.1e-09 Score=100.79 Aligned_cols=227 Identities=10% Similarity=-0.008 Sum_probs=132.0
Q ss_pred HHHHHHHccCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---CC-CHHHH
Q 048749 161 AILDVLGRARRFVELIQVFDEMP----DLVN----EKTYGILLNRYAAAHMVEEAIGVFDRRKEFG--E---LD-DLSAF 226 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~---~~-~~~~~ 226 (536)
.....+...|++++|...|++.. ..++ ..++..+...|...|++++|+..+.+..+.. . .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 33444555566666665555543 1111 2345555666666666666666665554321 0 01 13355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcC---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 048749 227 QNLLLWLCRYKHVEVAETFFESEKN---EFG---YDIKTMNIILNGWCVLGNVYEAKRFWKDIIK-----SKCEPDSVTY 295 (536)
Q Consensus 227 ~~ll~~~~~~~~~~~a~~~~~~~~~---~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~ 295 (536)
+.+...|...|++++|...|++... ... ....+++.+...|...|++++|...+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 5666666666666666666665211 111 1234566677777777777777777777665 32 2235667
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCC----CCCHhhHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHH
Q 048749 296 ATFVNALTKKGKLGTALRLFQAMWEKGR----KPDVVTCNCIIDALCFKKR---IPEALEVLREMKNRGCLPN-VTTYNS 367 (536)
Q Consensus 296 ~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~ 367 (536)
..+...+.+.|++++|...+++..+... +.....+..+...|...|+ +++|+.++++. +..++ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 7777778888888888888877766421 1122344555555666666 66666666652 22222 345566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 368 LIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 368 li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
+...|.+.|++++|.+.|++..+.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 777888888888888888877654
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.14 E-value=4.7e-09 Score=93.58 Aligned_cols=194 Identities=9% Similarity=-0.045 Sum_probs=134.3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048749 154 PGSNVFNAILDVLGRARRFVELIQVFDEMP--DL-VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLL 230 (536)
Q Consensus 154 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 230 (536)
.|+..+......+.+.|++++|...|++.. .+ ++...+..+..++...|++++|++.|++..+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 456777778888888888888888888776 44 677777778888888888888888888887754 34566777788
Q ss_pred HHHHhcCCHHHHHHHHHHhcCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 048749 231 LWLCRYKHVEVAETFFESEKNEFGYDI-------KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEP--DSVTYATFVNA 301 (536)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~ 301 (536)
..+...|++++|...+++.....+.+. .+|..+...+...|++++|...|++..+.. +- +...|..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence 888888888888888887544334455 457777778888888888888888887653 22 34566666666
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 302 LTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
|...| ..+++.+...+. .+...|.... ....+.+++|+..|++..+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 65443 334455544422 2334443333 334566788888888887753
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=9.9e-10 Score=101.17 Aligned_cols=223 Identities=13% Similarity=0.059 Sum_probs=154.3
Q ss_pred ccCCHHHHHHHHHhCC-------C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHH
Q 048749 168 RARRFVELIQVFDEMP-------D---LVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEF------GE-LDDLSAFQNLL 230 (536)
Q Consensus 168 ~~g~~~~A~~~~~~~~-------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~~~ll 230 (536)
..|++++|+..|++.. . +....++..+...|...|++++|++.|++..+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4566666665555544 1 234567889999999999999999999998764 22 23356788899
Q ss_pred HHHHhcCCHHHHHHHHHHhcCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHH
Q 048749 231 LWLCRYKHVEVAETFFESEKNE--------FGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS------KCEP-DSVTY 295 (536)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~ 295 (536)
..+...|++++|...+++.... .+....++..+...|...|++++|...+++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999984221 2345677889999999999999999999998765 1122 35678
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHc-------CCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHH----HCC--CCCC
Q 048749 296 ATFVNALTKKGKLGTALRLFQAMWEK-------GRKPDV-VTCNCIIDALCFKKRIPEALEVLREMK----NRG--CLPN 361 (536)
Q Consensus 296 ~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g--~~p~ 361 (536)
..+...|...|++++|..++++..+. ...+.. ..+..+...+...+....+.. +..+. ..+ ....
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHH
Confidence 88899999999999999999998864 122222 233333333333333333322 22221 111 1123
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 362 VTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 362 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
..++..+...|...|++++|..+|++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567888899999999999999999988653
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.12 E-value=6.4e-10 Score=102.48 Aligned_cols=232 Identities=11% Similarity=-0.011 Sum_probs=131.1
Q ss_pred cCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc------CCCC-CHhhHHHHHH
Q 048749 270 LGNVYEAKRFWKDIIK-------SKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK------GRKP-DVVTCNCIID 335 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~ 335 (536)
.|++++|...+++..+ ...+....++..+...|...|++++|+..+++..+. +-.| ...++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4455555554444433 121223556777777888888888888888777654 1122 3456777888
Q ss_pred HHHhcCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHh
Q 048749 336 ALCFKKRIPEALEVLREMKNR------GC-LPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKS 408 (536)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~ 408 (536)
.|...|++++|.+.|++..+. .. +....++..+...|...|++++|.+.++++.+..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 157 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY---------------- 157 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------
Confidence 888888888888888877643 11 1236678888889999999999999999886641
Q ss_pred cCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcC
Q 048749 409 LKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK-------GMGPD-QRSYTVMIHGLYDKG 480 (536)
Q Consensus 409 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~-~~~~~~li~~~~~~g 480 (536)
+.......+....++..+...|...|++++|...+++..+. ...+. ...|..+...+...+
T Consensus 158 -----------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (283)
T 3edt_B 158 -----------ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKD 226 (283)
T ss_dssp -----------HHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTC
T ss_pred -----------HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCC
Confidence 00000000112456667777777788888888877776642 11111 122333322333222
Q ss_pred CHHHHHHHHHHH--HHC-C-CCCc-HHHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 048749 481 RLEDALSYFHEM--RLK-G-MVPE-PRTGILVNDMNIKLKERGEQGKKVIKLT 528 (536)
Q Consensus 481 ~~~~A~~~~~~m--~~~-g-~~p~-~~t~~~l~~~~~~~~~~~~a~~~~~~~~ 528 (536)
....+..+.... .+. + ..|+ ..++..+..++...|+.++|.+.+.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 227 KRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp CCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222222111110 001 1 1122 2336667777777777777777776653
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=1.2e-08 Score=82.00 Aligned_cols=129 Identities=17% Similarity=0.189 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV 269 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 269 (536)
.|..+...+...|++++|+++|+++.+.+ +.+...+..+...+...|++++|..++++.....+.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34555555666666666666666655543 23444455555555555555555555555322223344455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 270 LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
.|++++|.++++++.+.. +.+..++..+...+...|++++|.+.++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555554433 22344455555555555555555555555444
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.04 E-value=1.1e-07 Score=86.96 Aligned_cols=206 Identities=9% Similarity=0.043 Sum_probs=136.4
Q ss_pred ccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 168 RARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFE 247 (536)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 247 (536)
-.|.+..++.-..++.........-.+.++|...|++... ..-.|....+..+... ...+ |...|+
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc----HHHHHH
Confidence 3566666665444444222223334455666666665531 1123343343333332 2322 667777
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-
Q 048749 248 SEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKC-EPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP- 325 (536)
Q Consensus 248 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p- 325 (536)
+....-+++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.++.|.+. .|
T Consensus 91 ~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d 168 (310)
T 3mv2_B 91 NLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IED 168 (310)
T ss_dssp HTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCH
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Ccc
Confidence 75433355666667888889999999999999999877653 235677888889999999999999999999874 55
Q ss_pred ----CHhhHHHHHHHHH--hcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 326 ----DVVTCNCIIDALC--FKK--RIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 326 ----~~~~~~~li~~~~--~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
+..+...++.++. ..| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 169 ~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 169 TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3556666666633 334 899999999999765 355344445555899999999999999977653
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.03 E-value=9.7e-09 Score=82.50 Aligned_cols=129 Identities=14% Similarity=0.150 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLC 234 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 234 (536)
..|..+...+...|++++|..+|+++. .+.+...|..+...+...|++++|.+.|+++.+.+ +.+...+..+...+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 357778888889999999999998876 56678888889999999999999999999988765 556778888888999
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 235 RYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
..|++++|...++.+....+.+..++..+...+.+.|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999998865444567888889999999999999999999988764
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.99 E-value=2.2e-07 Score=84.89 Aligned_cols=185 Identities=12% Similarity=0.056 Sum_probs=105.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048749 276 AKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGR-KPDVVTCNCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 276 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
|...|++..+.+ .++..++..+..++...|++++|++++.+.+..|- .-+...+..++..+.+.|+.+.|.++++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555554443 34444444555666666666666666665544432 1234455555666666666666666666665
Q ss_pred HCCCCC-----CHHHHHHHHHHHHh--cC--CHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHC
Q 048749 355 NRGCLP-----NVTTYNSLIKHLCK--IK--RMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERN 425 (536)
Q Consensus 355 ~~g~~p-----~~~~~~~li~~~~~--~~--~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~ 425 (536)
+. .| +..+...|..++.. .| +..+|+.+|+++.+..
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--------------------------------- 208 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--------------------------------- 208 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---------------------------------
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---------------------------------
Confidence 43 23 13333444444222 22 5666666666654432
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 426 GCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKK-----G----MGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKG 496 (536)
Q Consensus 426 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 496 (536)
|+..+...++.++.+.|++++|.+.++.+.+. . -+-|..++..+|......|+ +|.++++++.+.
T Consensus 209 ---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~- 282 (310)
T 3mv2_B 209 ---PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL- 282 (310)
T ss_dssp ---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT-
T ss_pred ---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh-
Confidence 33233334444788899999999999876542 0 02356677666666666776 888999998874
Q ss_pred CCCcHHH
Q 048749 497 MVPEPRT 503 (536)
Q Consensus 497 ~~p~~~t 503 (536)
.|+...
T Consensus 283 -~P~hp~ 288 (310)
T 3mv2_B 283 -DHEHAF 288 (310)
T ss_dssp -TCCCHH
T ss_pred -CCCChH
Confidence 465443
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.98 E-value=2.2e-08 Score=93.00 Aligned_cols=206 Identities=10% Similarity=-0.005 Sum_probs=135.0
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 048749 171 RFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEF----GELDD-LSAFQNLLLWLCRYKHVEVAETF 245 (536)
Q Consensus 171 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~~~~~~a~~~ 245 (536)
++++|...|++. ...|...|++++|++.|.+..+. |-+++ ..+|+.+..+|.+.|++++|...
T Consensus 32 ~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~ 99 (292)
T 1qqe_A 32 KFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99 (292)
T ss_dssp HHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477777776665 44567778888888888776543 31222 45777788888888888888887
Q ss_pred HHHhcC-----CCC-CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHhHHHH
Q 048749 246 FESEKN-----EFG-YDIKTMNIILNGWCVL-GNVYEAKRFWKDIIKSKCE-PD----SVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 246 ~~~~~~-----~~~-~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~ 313 (536)
+++... +-. .-..+++.+...|... |++++|+..|++..+.... .+ ..++..+...+.+.|++++|+.
T Consensus 100 ~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 179 (292)
T 1qqe_A 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD 179 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 776311 100 1134677888888885 8888888888887653200 01 3467778888888888888888
Q ss_pred HHHHHHHcCCCCCH------hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHH--hcCCHH
Q 048749 314 LFQAMWEKGRKPDV------VTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN------VTTYNSLIKHLC--KIKRME 379 (536)
Q Consensus 314 ~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~--~~~~~~ 379 (536)
.|++..+....... ..|..+..++...|++++|...|++..+. .|+ ...+..++.+|. ..++++
T Consensus 180 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 180 IYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888875332221 14666777788888888888888887653 222 112344555554 345677
Q ss_pred HHHHHHHHHHh
Q 048749 380 TVYEYLDEMEQ 390 (536)
Q Consensus 380 ~A~~~~~~m~~ 390 (536)
+|+..|+++..
T Consensus 258 ~A~~~~~~~~~ 268 (292)
T 1qqe_A 258 EHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHTTSSC
T ss_pred HHHHHhccCCc
Confidence 77777766544
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=2.3e-08 Score=91.09 Aligned_cols=95 Identities=9% Similarity=-0.057 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C-CCHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVN---EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGE-L-DDLSAFQ 227 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~-~~~~~~~ 227 (536)
+...+..+...+.+.|++++|...|+++. .+.+ ...+..+..+|.+.|++++|+..|++..+... . ....++.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 45556666666666666666666666665 2233 45666666666666666666666666665421 1 1133445
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHh
Q 048749 228 NLLLWLCR--------YKHVEVAETFFESE 249 (536)
Q Consensus 228 ~ll~~~~~--------~~~~~~a~~~~~~~ 249 (536)
.+..++.. .|++++|...|++.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~ 123 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLF 123 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 55555555 66666666666654
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.96 E-value=3.2e-08 Score=91.91 Aligned_cols=203 Identities=13% Similarity=0.032 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP----DLVN----EKTYGILLNRYAAAHMVEE 206 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~li~~~~~~g~~~~ 206 (536)
+++.|...|+.+ ...|...|++++|...|++.. ...+ ..+|+.+..+|...|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 377777777665 456778899999998888765 1111 4678999999999999999
Q ss_pred HHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhc-CCHHHHHHHHHHhcCCCCC--C----HHHHHHHHHHHHhcCCHH
Q 048749 207 AIGVFDRRKEFGEL-DD----LSAFQNLLLWLCRY-KHVEVAETFFESEKNEFGY--D----IKTMNIILNGWCVLGNVY 274 (536)
Q Consensus 207 A~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~--~----~~~~~~li~~~~~~g~~~ 274 (536)
|+..|++..+.... .+ ..++..+...|... |++++|...|++...-.+. + ..+++.+...|.+.|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 99999887653211 11 45788888999996 9999999999884221111 1 456888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH------hhHHHHHHHHH--hc
Q 048749 275 EAKRFWKDIIKSKCEPDS------VTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV------VTCNCIIDALC--FK 340 (536)
Q Consensus 275 ~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~--~~ 340 (536)
+|+..|++..+....... ..|..+..++...|++++|...|++..+. .|+. ..+..++.+|. ..
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 999999999886432221 15677888899999999999999998763 3321 23445566664 45
Q ss_pred CChHHHHHHHHHHHH
Q 048749 341 KRIPEALEVLREMKN 355 (536)
Q Consensus 341 g~~~~A~~~~~~m~~ 355 (536)
+++++|+..|+.+..
T Consensus 254 ~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhccCCc
Confidence 678888888876654
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.94 E-value=4.9e-08 Score=85.55 Aligned_cols=110 Identities=12% Similarity=0.114 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHhcCCCC
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQN----------------LLLWLCRYKHVEVAETFFESEKNEFG 254 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~ 254 (536)
+-.....+...|++++|+..|++..+.. +.+...+.. +..++.+.|++++|...|++.....+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 3334445566677777777776666543 112223322 34444444444444444444322223
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048749 255 YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNAL 302 (536)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 302 (536)
.+...+..+...|...|++++|...|++..+.. +-+..+|..+...|
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYY 132 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 344444444444444444444444444444432 22333444444443
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.93 E-value=1.3e-07 Score=86.10 Aligned_cols=187 Identities=9% Similarity=-0.069 Sum_probs=105.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC---CCCHHH
Q 048749 186 VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD---LSAFQNLLLWLCRYKHVEVAETFFESEKNEF---GYDIKT 259 (536)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 259 (536)
.+...+-.+...+.+.|++++|++.|+++.+.. +.+ ...+..+..++.+.|++++|...|+...... +....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 445555666666666666666666666666543 222 4455556666666666666666666632211 122344
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHH
Q 048749 260 MNIILNGWCV--------LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCN 331 (536)
Q Consensus 260 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 331 (536)
+..+..++.. .|++++|...|+++.+.. +-+...+..+.. +..+... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 5555555555 666666666666665542 111111111100 0000000 001134
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcC
Q 048749 332 CIIDALCFKKRIPEALEVLREMKNRGCLP--NVTTYNSLIKHLCKI----------KRMETVYEYLDEMEQKN 392 (536)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------~~~~~A~~~~~~m~~~~ 392 (536)
.+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...|+++.+..
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 56677888889999998888887653221 245666777777765 88888999998888765
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.91 E-value=4e-08 Score=86.12 Aligned_cols=124 Identities=7% Similarity=-0.067 Sum_probs=57.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-
Q 048749 194 LLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGN- 272 (536)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~- 272 (536)
+..+|.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...|++....-+.+..+|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 5555555555555555555555543 33455555555555555555555555555433234455555555555543332
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 273 -VYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 273 -~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
.+.+...++.... ..|....+.....++...|++++|...|++..+
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2233333333321 111112222233334445555555555555554
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.89 E-value=1.4e-06 Score=80.40 Aligned_cols=218 Identities=10% Similarity=0.003 Sum_probs=122.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHhCC--CCCCHHHHHHHHHHH----Hhc---CC
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRAR--RFVELIQVFDEMP--DLVNEKTYGILLNRY----AAA---HM 203 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~--~~~~~~~~~~li~~~----~~~---g~ 203 (536)
..+.|++.++.++..+ +-+..+|+.--.++...| +++++++.++.+. .+.+..+|+.--..+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 4456777777776653 445566777766666666 6666666666665 555555665544444 333 45
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHH
Q 048749 204 VEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVY--EAKRFWK 281 (536)
Q Consensus 204 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~ 281 (536)
+++++++++++.+.. +- +..+|+.-.-.+.+.|.++ ++++.++
T Consensus 126 ~~~EL~~~~~~l~~~-pk----------------------------------ny~aW~~R~~vl~~l~~~~~~~EL~~~~ 170 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PK----------------------------------NHHVWSYRKWLVDTFDLHNDAKELSFVD 170 (306)
T ss_dssp THHHHHHHHHHHHHC-TT----------------------------------CHHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CC----------------------------------CHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence 555555555555443 33 4444444444444444444 5555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCC------HhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH-HHHHHHHHH
Q 048749 282 DIIKSKCEPDSVTYATFVNALTKKGK------LGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE-ALEVLREMK 354 (536)
Q Consensus 282 ~m~~~g~~~~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~ 354 (536)
.+++.. +-|...|+.-...+.+.+. ++++++.++.+..... -|...|+.+-..+.+.|+... +.++..++.
T Consensus 171 ~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 171 KVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 555544 3355555554444444444 5666666666666532 255666666666666665333 334444443
Q ss_pred HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 355 NRG--CLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 355 ~~g--~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
+.+ -..+...+..+...|.+.|+.++|.++++.+.++
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 322 1235666677777777777777777777777653
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=2.9e-08 Score=84.42 Aligned_cols=159 Identities=12% Similarity=0.004 Sum_probs=86.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 048749 158 VFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW-LC 234 (536)
Q Consensus 158 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~ 234 (536)
.+..+...+.+.|++++|...|++.. .+.+...|..+...+...|++++|+..|++..+.. |+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 34556666777777777777777776 55666777777777777777777777777765543 243332221111 11
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHH
Q 048749 235 RYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEP-DSVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~ 313 (536)
..+....|...+++.....+.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 11111223444444322223345555555555555555555555555555443211 23345555555555555555555
Q ss_pred HHHHH
Q 048749 314 LFQAM 318 (536)
Q Consensus 314 ~~~~m 318 (536)
.|++.
T Consensus 166 ~y~~a 170 (176)
T 2r5s_A 166 KYRRQ 170 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=1.7e-08 Score=105.30 Aligned_cols=170 Identities=10% Similarity=-0.038 Sum_probs=93.4
Q ss_pred HccCCHHHHHHHHHhCC----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048749 167 GRARRFVELIQVFDEMP----------DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRY 236 (536)
Q Consensus 167 ~~~g~~~~A~~~~~~~~----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 236 (536)
...|++++|++.|++.. .+.+...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 45555555555555432 23444555555666666666666666666655543 34455555555666666
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 048749 237 KHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQ 316 (536)
Q Consensus 237 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 316 (536)
|++++|...|++.....+.+...|..+..+|.+.|++++ ++.|++..+.+ +-+...|..+..++.+.|++++|++.|+
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666665432224455556666666666666666 66666665544 3345566666666666666666666666
Q ss_pred HHHHcCCCCC-HhhHHHHHHHHHhcC
Q 048749 317 AMWEKGRKPD-VVTCNCIIDALCFKK 341 (536)
Q Consensus 317 ~m~~~g~~p~-~~~~~~li~~~~~~g 341 (536)
+..+. .|+ ...+..+..++...+
T Consensus 559 ~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 559 EVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp TSCTT--STTHHHHHHHHHHHTC---
T ss_pred hhccc--CcccHHHHHHHHHHHHccC
Confidence 55543 232 344444555544433
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.86 E-value=3.6e-08 Score=102.89 Aligned_cols=173 Identities=9% Similarity=0.048 Sum_probs=134.4
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 048749 199 AAAHMVEEAIGVFDRRK--------EFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVL 270 (536)
Q Consensus 199 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 270 (536)
...|++++|++.|++.. +.. +.+...+..+..++.+.|++++|...|++.....+.+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999887 332 456677888888899999999999999886544466788888898999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 048749 271 GNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVL 350 (536)
Q Consensus 271 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 350 (536)
|++++|...|++..+.. +-+...|..+..++.+.|++++ ++.|++..+.. +.+...|..+..++.+.|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988765 3456778888888999999999 99998888753 235677888888899999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 048749 351 REMKNRGCLPN-VTTYNSLIKHLCKIKR 377 (536)
Q Consensus 351 ~~m~~~g~~p~-~~~~~~li~~~~~~~~ 377 (536)
++..+. .|+ ...|..+..++...++
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence 888765 344 5566666667655444
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.84 E-value=4.4e-06 Score=83.18 Aligned_cols=338 Identities=9% Similarity=0.014 Sum_probs=214.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHhCC-----CCCCHHHHHHHHHHHH----hcCC
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARR-FVELIQVFDEMP-----DLVNEKTYGILLNRYA----AAHM 203 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~-----~~~~~~~~~~li~~~~----~~g~ 203 (536)
++++.+..+|+.+... .|+...|...++...+.+. .+....+|+... +..+...|...+..+. .+++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 6899999999999874 4689999998888877663 345566666644 3467788888887654 3467
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHh
Q 048749 204 VEEAIGVFDRRKEFGELDDLSAFQNLLLWLCR-------------YKHVEVAETFFESEKNEFG-YDIKTMNIILNGWCV 269 (536)
Q Consensus 204 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~ 269 (536)
.+.+.++|++.+......-...|......-.. .+.+..|..+++......+ .+...|...+.--..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 88899999998874221112223222221111 1123334444444321111 144466665554322
Q ss_pred c--CC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 048749 270 L--GN-----VYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKR 342 (536)
Q Consensus 270 ~--g~-----~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 342 (536)
. |- .+.+..+|+++.... +.+...|...+.-+.+.|+.+.|..+|++.... +.+...+. .|....+
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e 257 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD 257 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc
Confidence 1 11 345677898888754 556788888888889999999999999999987 33332222 2333222
Q ss_pred hHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHH--HHHH-
Q 048749 343 IPEALEVLREMKNR---------GCLP---NVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFN--YLLK- 407 (536)
Q Consensus 343 ~~~A~~~~~~m~~~---------g~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~--~ll~- 407 (536)
.++. ++.+.+. +..+ ....|...+....+.++.+.|..+|... ... ..+...|. +.+.
T Consensus 258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~---~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE---GVGPHVFIYCAFIEY 330 (493)
T ss_dssp CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS---CCCHHHHHHHHHHHH
T ss_pred hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC---CCChHHHHHHHHHHH
Confidence 2222 2322211 0001 1345666677777788899999999999 322 12333333 3232
Q ss_pred hcC-CCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 408 SLK-KPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDAL 486 (536)
Q Consensus 408 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 486 (536)
.++ ..+.|..+++...+.- +-+...+...++...+.|+.+.|..+|+.+. .....|...+.--...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 234 4778899999887742 2345567778888888999999999999973 25778888888778889999999
Q ss_pred HHHHHHHH
Q 048749 487 SYFHEMRL 494 (536)
Q Consensus 487 ~~~~~m~~ 494 (536)
.+++++..
T Consensus 405 ~v~~~~~~ 412 (493)
T 2uy1_A 405 ELVDQKMD 412 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98988874
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=9.9e-08 Score=81.07 Aligned_cols=158 Identities=11% Similarity=-0.007 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhc
Q 048749 192 GILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG-WCVL 270 (536)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~ 270 (536)
..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++......+ +...+..+... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh
Confidence 334445555555555555555544432 33444555555555555555555555555322212 33222211111 1111
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCChHHHHHH
Q 048749 271 GNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP-DVVTCNCIIDALCFKKRIPEALEV 349 (536)
Q Consensus 271 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~ 349 (536)
+...+|...+++..+.. +-+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 11122344444444332 2234444444444444455555554444444432111 123444444444444444444444
Q ss_pred HHH
Q 048749 350 LRE 352 (536)
Q Consensus 350 ~~~ 352 (536)
|++
T Consensus 167 y~~ 169 (176)
T 2r5s_A 167 YRR 169 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.83 E-value=6e-08 Score=89.72 Aligned_cols=161 Identities=12% Similarity=0.024 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQN-LLL 231 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-ll~ 231 (536)
+...+..+...+.+.|++++|...|++.. .+.+...+..+...+.+.|++++|++.+++..... |+...... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 34444455555555555555555555544 44445555555555555555555555555544332 23221111 111
Q ss_pred HHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHhH
Q 048749 232 WLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCE-PDSVTYATFVNALTKKGKLGT 310 (536)
Q Consensus 232 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~ 310 (536)
.+.+.++.+.|...+++.....+.+...+..+...|...|++++|...|+++.+.... .+...+..++..+...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 2333334444444444432222334444444444444444444444444444443211 012334444444444444444
Q ss_pred HHHHHHH
Q 048749 311 ALRLFQA 317 (536)
Q Consensus 311 a~~~~~~ 317 (536)
|...|++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.82 E-value=3.1e-07 Score=80.63 Aligned_cols=175 Identities=10% Similarity=0.004 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHH
Q 048749 138 AAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAH----MVEEAIGVFDR 213 (536)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~ 213 (536)
+|++.|+.+.+.+ ++.++..+..+|...+++++|.+.|++.....+...+..+...|.. + ++++|++.|++
T Consensus 4 eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 3555666666554 6667777777777777777777777776644556666666666666 5 67777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 048749 214 RKEFGELDDLSAFQNLLLWLCR----YKHVEVAETFFESEKNEFG--YDIKTMNIILNGWCV----LGNVYEAKRFWKDI 283 (536)
Q Consensus 214 m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~----~g~~~~A~~~~~~m 283 (536)
..+.| +..++..|...|.. .+++++|..+|++....-+ .+...+..|...|.. .+++++|..+|++.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 66543 45555555555554 5566666666666432211 014555566666655 55666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhc-C-----CHhHHHHHHHHHHHcC
Q 048749 284 IKSKCEPDSVTYATFVNALTKK-G-----KLGTALRLFQAMWEKG 322 (536)
Q Consensus 284 ~~~g~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g 322 (536)
.+.+ .+...+..|...|... | ++++|..+|+...+.|
T Consensus 156 ~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 SSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5541 2223444444444432 2 5566666665555544
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=2.2e-07 Score=85.83 Aligned_cols=177 Identities=11% Similarity=0.002 Sum_probs=126.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC
Q 048749 174 ELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEF 253 (536)
Q Consensus 174 ~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 253 (536)
...+.++... +.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+...+.+.|++++|...++.+...
T Consensus 104 ~l~~~l~~~l-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 104 AIRALLDXVL-PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHS-CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHc-CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 3344444433 3455677778888888999999999999888765 556778888888888999999999888886443
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-CCHhhHH
Q 048749 254 GYDIKTM-NIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRK-PDVVTCN 331 (536)
Q Consensus 254 ~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~ 331 (536)
.|+.... ......+...++.+.|...+++..+.. +.+...+..+...+...|++++|+..|.++.+.... .+...+.
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 2344332 223333566777777888888877765 456777888888888888888888888888875322 1255677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 048749 332 CIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
.++..+...|+.++|...|++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 88888888888888887777654
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.81 E-value=1.7e-06 Score=79.80 Aligned_cols=207 Identities=11% Similarity=0.105 Sum_probs=126.4
Q ss_pred HHHHhhcCCCCCHHHHHH-HHHhcc-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----Hcc---CCHHHHHHHHH
Q 048749 110 EKALNQCELTLTDDLIVN-VINRYR-FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVL----GRA---RRFVELIQVFD 180 (536)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~-~l~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~~A~~~~~ 180 (536)
.++|...+...+.-..-+ +|...+ .+++.++++++.+.... +-+..+|+.-..++ .+. +++++++.+++
T Consensus 57 ~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~ 134 (306)
T 3dra_A 57 ELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILE 134 (306)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHH
T ss_pred HHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 344444444443333333 444444 49999999999999874 66778888877777 555 78999999999
Q ss_pred hCC--CCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHhc
Q 048749 181 EMP--DLVNEKTYGILLNRYAAAHMVE--EAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKH------VEVAETFFESEK 250 (536)
Q Consensus 181 ~~~--~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~------~~~a~~~~~~~~ 250 (536)
++. .+.+-.+|+.-.-.+.+.|.++ ++++.++++.+.. +-|..+|+.-...+.+.+. ++++.+.++...
T Consensus 135 ~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI 213 (306)
T 3dra_A 135 AMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKI 213 (306)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence 998 8899999999998899999888 9999999999876 5667777766555555554 444444444432
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048749 251 NEFGYDIKTMNIILNGWCVLGNVYE-AKRFWKDIIKSK--CEPDSVTYATFVNALTKKGKLGTALRLFQAMW 319 (536)
Q Consensus 251 ~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 319 (536)
...+-|..+|+-+-..+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.++|.++++.+.
T Consensus 214 ~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 214 VKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 2223444555544444444444222 222333322211 11233444444444444444444444444443
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.81 E-value=1.2e-07 Score=97.13 Aligned_cols=161 Identities=9% Similarity=-0.103 Sum_probs=120.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVF 211 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 211 (536)
++++.|++.|+.+.+.. +.+...|..+...|.+.|++++|.+.|++.. .+.+...|..+...|...|++++|++.|
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 58899999999988763 5578889999999999999999999999876 6677889999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCC
Q 048749 212 DRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVL---GNVYEAKRFWKDIIKSKC 288 (536)
Q Consensus 212 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~ 288 (536)
++..+.. +.+...+..+..++.+.|++++|.+.+++.....+.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~- 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG- 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT-
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC-
Confidence 9998875 556788899999999999999999999986444466788899999999999 99999999999998875
Q ss_pred CCCHHHHHHH
Q 048749 289 EPDSVTYATF 298 (536)
Q Consensus 289 ~~~~~~~~~l 298 (536)
+.+...|..+
T Consensus 159 p~~~~~~~~l 168 (568)
T 2vsy_A 159 VGAVEPFAFL 168 (568)
T ss_dssp CCCSCHHHHT
T ss_pred CcccChHHHh
Confidence 2333444433
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.81 E-value=1.5e-08 Score=83.55 Aligned_cols=135 Identities=10% Similarity=-0.001 Sum_probs=66.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
+++++.|+..++.+.... +.+...+..+..+|.+.|++++|++.|++.. .+.+..+|..+..+|...|++++|+..
T Consensus 10 ~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 345555555555554431 2223344455555556666666666555554 445555555555555555666666555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHhc
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETF-FESEKNEFGYDIKTMNIILNGWCVL 270 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~li~~~~~~ 270 (536)
|++..+.. +-+..++..+...+.+.|+.++|.+. +++..+-.|.+..+|......+...
T Consensus 88 ~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 88 YRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 55555543 33344555555555555554443332 2332222233444444444443333
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.80 E-value=7.4e-08 Score=98.61 Aligned_cols=149 Identities=7% Similarity=-0.100 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 170 RRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFE 247 (536)
Q Consensus 170 g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 247 (536)
|++++|.+.|++.. .+.+...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34444444444443 33344445555555555555555555555544432 2334444444455555555555555554
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHhHHHHHHHHHHH
Q 048749 248 SEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKK---GKLGTALRLFQAMWE 320 (536)
Q Consensus 248 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~ 320 (536)
+.....+.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 4322223344444555555555555555555555444432 22344444444444444 455555555554444
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.80 E-value=3.4e-07 Score=81.24 Aligned_cols=182 Identities=11% Similarity=-0.005 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCH-HHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVN---EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGEL-DDL-SAFQN 228 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~-~~~~~ 228 (536)
...+..+...+.+.|++++|+..|+++. .+.+ ...+..+..+|.+.|++++|++.|++..+..-. +.. .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3444555555666666666666666654 1111 245555666666666666666666666554311 111 12222
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048749 229 LLLWLCR------------------YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEP 290 (536)
Q Consensus 229 ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 290 (536)
+..++.+ .|+.++|...|+.+....+.+..++.+..... .+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~----------~~~~~~~------ 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV----------FLKDRLA------ 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH----------HHHHHHH------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH----------HHHHHHH------
Confidence 3333322 34555555555554433333332222111100 0000000
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 291 DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPD----VVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
.....+...|.+.|++++|+..|+.+.+.. |+ ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011245567778888888888888887752 22 2456777788888888888888888877654
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.80 E-value=1.7e-08 Score=83.23 Aligned_cols=110 Identities=10% Similarity=-0.100 Sum_probs=51.3
Q ss_pred HHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 165 VLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVA 242 (536)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 242 (536)
++...|++++|+..++... .+.+...+-.+...|.+.|++++|++.|++.++.. +.+..+|..+..++.+.|++++|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 3344455555555555544 11122233445555555555555555555555443 33444455555555555555555
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048749 243 ETFFESEKNEFGYDIKTMNIILNGWCVLGNVYE 275 (536)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 275 (536)
...|+......+.+..+|..+...|.+.|++++
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence 555544322223344444444444544444443
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=9.2e-07 Score=77.58 Aligned_cols=178 Identities=11% Similarity=0.089 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC----ChHHHHHHH
Q 048749 275 EAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKK----RIPEALEVL 350 (536)
Q Consensus 275 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~ 350 (536)
+|.+.|++..+.| +..++..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|++.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4666777777654 56677777777777888888888888887764 45666666666766 5 788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCC
Q 048749 351 REMKNRGCLPNVTTYNSLIKHLCK----IKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNG 426 (536)
Q Consensus 351 ~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~ 426 (536)
++..+.| +...+..|-..|.. .+++++|+++|++..+.+ |..
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~----~~~--------------------------- 122 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS----ESD--------------------------- 122 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST----TSH---------------------------
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC----CCc---------------------------
Confidence 8887764 56677777777766 778888888888887665 100
Q ss_pred CCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 048749 427 CKMSTDTYNVILKLYVN----WDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDK-G-----RLEDALSYFHEMRLKG 496 (536)
Q Consensus 427 ~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 496 (536)
.+...+..|...|.. .++.++|...|++..+. ..+...+..|-..|... | +.++|..+|++..+.|
T Consensus 123 --~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 123 --AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp --HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred --chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 014566666777766 77888999999888876 23455666676777653 3 8899999999888776
Q ss_pred C
Q 048749 497 M 497 (536)
Q Consensus 497 ~ 497 (536)
.
T Consensus 199 ~ 199 (212)
T 3rjv_A 199 F 199 (212)
T ss_dssp C
T ss_pred C
Confidence 4
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.79 E-value=6.2e-07 Score=79.54 Aligned_cols=187 Identities=5% Similarity=-0.119 Sum_probs=122.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCH---HHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGEL-D-DLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDI---KTMN 261 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 261 (536)
+...+-.+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|...|++.....+.+. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4456666777888999999999999998875421 1 135677788889999999999999988533323222 2444
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 048749 262 IILNGWCV------------------LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGR 323 (536)
Q Consensus 262 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 323 (536)
.+..++.. .|++++|...|+++++.. +-+..++...... + .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----~------~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----V------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----H------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----H------HHHHHHH----
Confidence 44444443 456666777776666542 1111222111110 0 0000000
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 324 KPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN--VTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 324 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
.....+...|.+.|++++|+..|+++.+...... ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0113456788999999999999999987632211 2568889999999999999999999998876
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.68 E-value=3.4e-07 Score=85.58 Aligned_cols=225 Identities=10% Similarity=0.020 Sum_probs=144.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDR 213 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 213 (536)
++++.|.++++.+.+.. +.+ .+...+++++|...|++. ...|...|++++|.+.|.+
T Consensus 5 ~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHH
Confidence 46778888888776542 111 011146677777666553 4556677777777777776
Q ss_pred HHHcC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhc----CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 214 RKEFG----ELD-DLSAFQNLLLWLCRYKHVEVAETFFESEK----NEFGY--DIKTMNIILNGWCVLGNVYEAKRFWKD 282 (536)
Q Consensus 214 m~~~g----~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 282 (536)
..+.. -.. -..+|+.+...|.+.|++++|...|++.. ..-.+ -..+++.+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 65431 111 13467777778888888888888777621 11111 23567788888888 999999998888
Q ss_pred HHHCCC---CC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHhcCChHHHHHHHHH
Q 048749 283 IIKSKC---EP--DSVTYATFVNALTKKGKLGTALRLFQAMWEK----GRKPD-VVTCNCIIDALCFKKRIPEALEVLRE 352 (536)
Q Consensus 283 m~~~g~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (536)
..+... .+ ...++..+...|.+.|++++|+..|++..+. +..+. ...+..+..++...|++++|...|++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 765310 11 1457788888899999999999999888763 21111 23566777778888999999999998
Q ss_pred HHHCCCCC-C---HHHHHHHHHHHHhcCCHHHHHHH
Q 048749 353 MKNRGCLP-N---VTTYNSLIKHLCKIKRMETVYEY 384 (536)
Q Consensus 353 m~~~g~~p-~---~~~~~~li~~~~~~~~~~~A~~~ 384 (536)
.. ..... + ......++.++ ..|+.+.+.++
T Consensus 221 al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 221 SY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred Hh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 87 42110 1 22344555555 56777766663
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=2e-06 Score=75.33 Aligned_cols=128 Identities=9% Similarity=-0.046 Sum_probs=99.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 048749 158 VFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYK 237 (536)
Q Consensus 158 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 237 (536)
.+..+...+.+.|++++|...|++.. .++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 45566777888888899988888886 4577888888888888888888888888888765 556778888888888888
Q ss_pred CHHHHHHHHHHhcCCCCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 238 HVEVAETFFESEKNEFGY----------------DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK 287 (536)
Q Consensus 238 ~~~~a~~~~~~~~~~~~~----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 287 (536)
++++|...|+......+. ....+..+..+|.+.|++++|...|+...+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 888888888875332222 23677888888888888888888888887654
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.64 E-value=2.5e-05 Score=72.81 Aligned_cols=227 Identities=9% Similarity=0.033 Sum_probs=122.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc-C-CHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRAR-RFVELIQVFDEMP--DLVNEKTYGILLNRYAAA-H-MVEEAI 208 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~-g-~~~~A~ 208 (536)
...+.|+++++.++..+ +-+..+|+.--.++...| .++++++.++.+. .+.+..+|+.-...+... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 34566777777777754 445666777777777776 4777777777766 566667777766666655 5 666777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048749 209 GVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKC 288 (536)
Q Consensus 209 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 288 (536)
++++++.+.. +.|..+|+.-.-.+.+.|..+. .+ ...++++++.++++++..
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~-------------~~-------------~~~~~eELe~~~k~I~~d- 197 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGR-------------IS-------------EAQWGSELDWCNEMLRVD- 197 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTC-------------CC-------------HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccc-------------cc-------------hhhHHHHHHHHHHHHHhC-
Confidence 7777766544 4455555444333333332220 00 000124555555555443
Q ss_pred CCCHHHHHHHHHHHHhcCC-------HhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh------------------
Q 048749 289 EPDSVTYATFVNALTKKGK-------LGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRI------------------ 343 (536)
Q Consensus 289 ~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~------------------ 343 (536)
+-|..+|+.....+.+.+. ++++++.++++.... +-|...|+.+-..+.+.|..
T Consensus 198 p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 276 (349)
T 3q7a_A 198 GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNP 276 (349)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----
T ss_pred CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccc
Confidence 2344455554444444443 455555555555432 22444454444444444432
Q ss_pred --HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 344 --PEALEVLREMKNRG-----CLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 344 --~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
....+...++...+ -.++...+..+...|...|+.++|.++++.+.++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 277 DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp ---------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 11111111221111 1346777778888888888888888888887654
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.63 E-value=2.4e-06 Score=74.73 Aligned_cols=127 Identities=11% Similarity=-0.149 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVL 270 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 270 (536)
+..+...+...|++++|++.|++.. .|+..++..+...+.+.|++++|...++......+.+...+..+..+|...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 4455566667777777777776653 456667777777777777777777777764333345666777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 048749 271 GNVYEAKRFWKDIIKSKCE--------------P-DSVTYATFVNALTKKGKLGTALRLFQAMWEK 321 (536)
Q Consensus 271 g~~~~A~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (536)
|++++|...|+...+.... | ....+..+..++...|++++|.+.|+...+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777777664311 0 1255666666677777777777777766664
No 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.62 E-value=0.0002 Score=71.22 Aligned_cols=357 Identities=8% Similarity=-0.055 Sum_probs=212.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCC-HHHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHM-VEEAIGVFD 212 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~-~~~A~~~~~ 212 (536)
+.+.|+.+|+.+...- |. |+++.+..+|++.. ..|+...|..-+....+.+. .+....+|+
T Consensus 10 ~i~~aR~vyer~l~~~---P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLY---MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp --CCHHHHHHHHHHHH---HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred chHHHHHHHHHHHHHC---CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 3666777777766531 22 88999999999988 66899999999988887774 456777888
Q ss_pred HHHHc-CC-CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHH-------------hcC
Q 048749 213 RRKEF-GE-LDDLSAFQNLLLWLC----RYKHVEVAETFFESEKNEFGYD--IKTMNIILNGWC-------------VLG 271 (536)
Q Consensus 213 ~m~~~-g~-~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~-------------~~g 271 (536)
..... |. ..+...|...+..+. ..++.+.+..+|++... .++. ...|......-. ..+
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~ 151 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLP 151 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhH
Confidence 77653 53 346777877777654 34678889999999543 2221 122322222110 112
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----HhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChH
Q 048749 272 NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKG--K-----LGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIP 344 (536)
Q Consensus 272 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 344 (536)
.+..|..+++.+...--..+...|...+.--...+ - .+.+..+|+++... .+.+...|...+..+.+.|+.+
T Consensus 152 ~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~ 230 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKE 230 (493)
T ss_dssp HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHH
Confidence 33344555544432100113345665555432221 1 34567889998886 4456778888888888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCCC---cHHHHHHHHHh---cCC
Q 048749 345 EALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNG-------SCLP---NEITFNYLLKS---LKK 411 (536)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-------~~~p---~~~~~~~ll~~---~~~ 411 (536)
+|..+|++.... +.+...|. .|+...+.++. ++.+.+... ...+ ....|...+.. .+.
T Consensus 231 ~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 231 KAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 999999999887 33433332 23333222222 222222110 0001 11223333332 244
Q ss_pred CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 412 PEEVPWVLERMERNGCKMSTDTYNVILKLYVNW-DCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFH 490 (536)
Q Consensus 412 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 490 (536)
.+.|..+++.. +.. ..+...|......-... ++.+.|..+|+...+.. +-+...|...++-....|+.+.|..+|+
T Consensus 302 ~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 302 LELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56777888887 321 23445554333333333 36999999999988752 2245567777887788899999999999
Q ss_pred HHHHCCCCCcHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 048749 491 EMRLKGMVPEPRTGILVNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 491 ~m~~~g~~p~~~t~~~l~~~~~~~~~~~~a~~~~~~~ 527 (536)
+.. .....+...+..-...|+.+.+.+.+.+.
T Consensus 379 r~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 379 RLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 873 13444666666666778777777766664
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=7.9e-06 Score=75.62 Aligned_cols=170 Identities=10% Similarity=0.019 Sum_probs=122.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-CC----Hhh
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSK-CEPDS----VTYATFVNALTKKGKLGTALRLFQAMWEKGRK-PD----VVT 329 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~ 329 (536)
+...+..+...|++++|..++++..+.. ..|+. ..+..+...+...|++++|+..+++..+.... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3344677888999999999999987643 12221 12334666677778999999999999884322 22 236
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHH
Q 048749 330 CNCIIDALCFKKRIPEALEVLREMKN----R-GCLPN-VTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFN 403 (536)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~ 403 (536)
++.+...|...|++++|+..|+++.+ . +..+. ..+|..+...|.+.|++++|.+.+++..+..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~----------- 226 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS----------- 226 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------
Confidence 88899999999999999999998873 1 11222 3478888999999999999999999876532
Q ss_pred HHHHhcCCCChHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCC-hhHHHHHHHHHHH
Q 048749 404 YLLKSLKKPEEVPWVLERMERNGCKMS-TDTYNVILKLYVNWDC-EDKVRHTWEEMEK 459 (536)
Q Consensus 404 ~ll~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 459 (536)
.+.+..+. ..+|..+...|.+.|+ +++|.+.+++...
T Consensus 227 -------------------~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 227 -------------------CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp -------------------HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -------------------HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 11111222 5788888899999995 5899888887664
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=6.7e-06 Score=76.12 Aligned_cols=126 Identities=11% Similarity=0.008 Sum_probs=67.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHH
Q 048749 229 LLLWLCRYKHVEVAETFFESEKN----EFGYD--IKTMNIILNGWCVLGNVYEAKRFWKDIIK---S-KCEP--DSVTYA 296 (536)
Q Consensus 229 ll~~~~~~~~~~~a~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~-g~~~--~~~~~~ 296 (536)
+...+...|++++|...++.... ...+. ..+++.+...|...|++++|...|++..+ . +..+ ...++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 33444555556666555555211 11111 33566666666666666666666666542 1 1011 114566
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcC----CCC-CHhhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 048749 297 TFVNALTKKGKLGTALRLFQAMWEKG----RKP-DVVTCNCIIDALCFKKRIPEA-LEVLREMK 354 (536)
Q Consensus 297 ~li~~~~~~g~~~~a~~~~~~m~~~g----~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 354 (536)
.+...|...|++++|+..+++..+.. ... -..+|..+...|.+.|++++| ...+++..
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 66666777777777777766655421 111 144566666677777777777 55565543
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=1.7e-06 Score=72.18 Aligned_cols=126 Identities=18% Similarity=0.055 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV 269 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 269 (536)
.|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...++......+.+...+..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34445555555555555555555555433 23344444555555555555555555554322223344455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHhHHHHHHHH
Q 048749 270 LGNVYEAKRFWKDIIKSKCEPDSVTYAT--FVNALTKKGKLGTALRLFQA 317 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~ 317 (536)
.|++++|...|++..+.. +.+...+.. ++..+...|++++|++.+..
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 555555555555554432 122223322 22224444555555555444
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.58 E-value=3.8e-05 Score=71.62 Aligned_cols=183 Identities=10% Similarity=0.095 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAH-MVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
.+++.+-..+.+.+..++|+++++.+. .+.+..+|+.--..+...| .+++++++++.+.... +-+..+|+.-...+
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444445555556667777777776 6666667777666666666 3777777777666544 34444554444444
Q ss_pred Hhc-C-CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---
Q 048749 234 CRY-K-HVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL--- 308 (536)
Q Consensus 234 ~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--- 308 (536)
.+. + +++ +++++++.+.+.. +.|..+|+.-.-.+.+.|.+
T Consensus 134 ~~l~~~~~~----------------------------------~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~ 178 (349)
T 3q7a_A 134 DRISPQDPV----------------------------------SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRI 178 (349)
T ss_dssp HHHCCSCCH----------------------------------HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhcCCChH----------------------------------HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccccc
Confidence 333 3 344 4444444444333 23444444333333333333
Q ss_pred -----hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048749 309 -----GTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKR-------IPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIK 376 (536)
Q Consensus 309 -----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 376 (536)
.++++.++++.+.... |...|+.....+.+.+. ++++++.++++...... |...|+-+-..+.+.|
T Consensus 179 ~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 179 SEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFS 256 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 3778888888776433 66777777777777665 56777777777665433 6677766655555554
Q ss_pred C
Q 048749 377 R 377 (536)
Q Consensus 377 ~ 377 (536)
+
T Consensus 257 ~ 257 (349)
T 3q7a_A 257 L 257 (349)
T ss_dssp C
T ss_pred C
Confidence 4
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.58 E-value=2.5e-06 Score=67.03 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
..|..+...+...|++++|++.|+++.+.. +.+..++..+...+.+.|++++|..+++.+....+.+..++..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 344444445555555555555555544432 2233444444444444444444444444432222333444444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 048749 269 VLGNVYEAKRFWKDIIK 285 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~ 285 (536)
..|++++|...|+++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 45555555555544443
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.58 E-value=5.5e-06 Score=76.68 Aligned_cols=129 Identities=12% Similarity=0.051 Sum_probs=80.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CCCCC-HhhH
Q 048749 262 IILNGWCVLGNVYEAKRFWKDIIKSKC-EPD----SVTYATFVNALTKKGKLGTALRLFQAMWEK-----GRKPD-VVTC 330 (536)
Q Consensus 262 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~-~~~~ 330 (536)
.+...+...|++++|+..|++..+... .++ ..+++.+...|...|++++|+..|+++.+. +..+. ..++
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 344455556667777777766665321 122 235666777777777777777777776631 11111 2356
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 048749 331 NCIIDALCFKKRIPEALEVLREMKN----RGCLPN-VTTYNSLIKHLCKIKR-METVYEYLDEMEQ 390 (536)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~~~-~~~A~~~~~~m~~ 390 (536)
..+...|.+.|++++|+..+++..+ .+..+. ..+|..+..+|.+.|+ +++|.+.+++...
T Consensus 200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7777778888888888888777643 222222 5677778888888884 5888888877654
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.57 E-value=1.7e-06 Score=72.21 Aligned_cols=128 Identities=12% Similarity=-0.022 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
...+..+...+...|++++|...|++.. .+.+..+|..+...+...|++++|++.|++..+.. +.+..++..+..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 4457777788888888888888888876 56678888888888888899999998888888765 45677888888888
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNI--ILNGWCVLGNVYEAKRFWKDII 284 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~ 284 (536)
...|++++|...+++.....+.+...+.. ++..+.+.|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88899999998888854333445555533 3344777888899888887654
No 126
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.56 E-value=1.2e-06 Score=81.87 Aligned_cols=197 Identities=13% Similarity=0.027 Sum_probs=134.6
Q ss_pred cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 169 ARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFF 246 (536)
Q Consensus 169 ~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 246 (536)
.|++++|.+++++.. .... + +...+++++|...|.+. ...|...|++++|...|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 456667777766554 1110 0 11146677777776654 45677889999999888
Q ss_pred HHhc-----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHhHHHHH
Q 048749 247 ESEK-----NEFG-YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS----KCEPD--SVTYATFVNALTKKGKLGTALRL 314 (536)
Q Consensus 247 ~~~~-----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~--~~~~~~li~~~~~~g~~~~a~~~ 314 (536)
.+.. .+.. .-..+|+.+...|.+.|++++|+..|++..+. | .+. ..++..+...|.. |++++|+..
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 8731 1111 12457888888899999999999999887643 2 121 3567778888888 999999999
Q ss_pred HHHHHHcCCCC-----CHhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 048749 315 FQAMWEKGRKP-----DVVTCNCIIDALCFKKRIPEALEVLREMKNR----GCLPN-VTTYNSLIKHLCKIKRMETVYEY 384 (536)
Q Consensus 315 ~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~A~~~ 384 (536)
|++..+..... ...++..+...|.+.|++++|+..|++..+. +..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98877641110 1456788888899999999999999988652 21111 23566667777788999999999
Q ss_pred HHHHHhcC
Q 048749 385 LDEMEQKN 392 (536)
Q Consensus 385 ~~~m~~~~ 392 (536)
|++.. ..
T Consensus 218 ~~~al-~~ 224 (307)
T 2ifu_A 218 VRESY-SI 224 (307)
T ss_dssp HHHHT-TS
T ss_pred HHHHh-CC
Confidence 99987 54
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.55 E-value=7.5e-07 Score=81.99 Aligned_cols=196 Identities=12% Similarity=0.021 Sum_probs=130.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048749 186 VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN 265 (536)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 265 (536)
.+...+..+...+...|++++|++.|++..+.. +.+...|..+..++.+.|++++|...++......+.+...+..+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 355677888888889999999999999888764 4477888888889999999999999999876655778888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 048749 266 GWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE 345 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 345 (536)
+|...|++++|...|++..+.+. -+...+...+....+. .++.. +..........+......+.. + ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAK-EQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 99999999999999988876421 0100111111111111 11111 222333334445444444432 2 3688899
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 048749 346 ALEVLREMKNRGCLPNV-TTYNSLIKHLCKI-KRMETVYEYLDEMEQK 391 (536)
Q Consensus 346 A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~-~~~~~A~~~~~~m~~~ 391 (536)
|++.++...+. .|+. .....+-..+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99988887765 4443 3333444444444 6688899999888664
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.53 E-value=2.3e-06 Score=67.22 Aligned_cols=113 Identities=14% Similarity=0.120 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
..++..+...+.+.|++++|.+.|+++. .+.+..++..+...+...|++++|+.+|+++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 5678888888888999999998888876 55677888888888889999999999998888765 45677888888888
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV 269 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 269 (536)
...|++++|...++......+.+...+..+...+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 899999999988888544335566666666555543
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.53 E-value=1.1e-05 Score=74.53 Aligned_cols=129 Identities=13% Similarity=0.051 Sum_probs=87.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCCC-----HhhH
Q 048749 262 IILNGWCVLGNVYEAKRFWKDIIKSKC---EPD--SVTYATFVNALTKKGKLGTALRLFQAMWEK-GRKPD-----VVTC 330 (536)
Q Consensus 262 ~li~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~-----~~~~ 330 (536)
.+...+...|++++|+..+++..+... .+. ..+|+.+...|...|++++|+..|++..+. ...|+ ..++
T Consensus 120 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 345556677888888888887765321 111 447778888888888888888888877632 01111 2477
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 048749 331 NCIIDALCFKKRIPEALEVLREMKNR----GCLP-NVTTYNSLIKHLCKIKRMETV-YEYLDEMEQ 390 (536)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~A-~~~~~~m~~ 390 (536)
..+...|.+.|++++|+..+++..+. +... -..+|..+...|.+.|++++| ...+++...
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 77888888888888888888876532 1111 156777788888888888888 666766543
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.53 E-value=1e-06 Score=76.37 Aligned_cols=155 Identities=8% Similarity=-0.036 Sum_probs=80.9
Q ss_pred cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHhH
Q 048749 236 YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS----KCE-PDSVTYATFVNALTKKGKLGT 310 (536)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~ 310 (536)
.|++++|.++++.+.........++..+...|...|++++|...+++..+. +.. ....++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 445555555333222211123445555555555566666666655555431 111 123445556666666666666
Q ss_pred HHHHHHHHHHc----CCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHH
Q 048749 311 ALRLFQAMWEK----GRKP--DVVTCNCIIDALCFKKRIPEALEVLREMKNR----GCLP-NVTTYNSLIKHLCKIKRME 379 (536)
Q Consensus 311 a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~ 379 (536)
|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+. +... -..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 66666665543 1111 1234556666667777777777777665421 1110 1233456666777777777
Q ss_pred HHHHHHHHHHh
Q 048749 380 TVYEYLDEMEQ 390 (536)
Q Consensus 380 ~A~~~~~~m~~ 390 (536)
+|.+.+++..+
T Consensus 165 ~A~~~~~~al~ 175 (203)
T 3gw4_A 165 EAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.52 E-value=2.8e-06 Score=67.37 Aligned_cols=115 Identities=13% Similarity=-0.017 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV 269 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 269 (536)
.|..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++|...++......+.+...+..+...|..
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 34444444445555555555555444432 22334444444444444444444444444222222334444444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048749 270 LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKG 306 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 306 (536)
.|++++|...|++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 444444444444444332 223333444444443333
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.52 E-value=3.2e-06 Score=67.02 Aligned_cols=94 Identities=12% Similarity=-0.012 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVL 270 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 270 (536)
+......|.+.|++++|++.|++.++.. +.+..+|..+..++.+.|++++|...+++....-+.+...|..+..+|...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3444444444444444444444444432 233444444444444444444444444442221233344444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 048749 271 GNVYEAKRFWKDIIK 285 (536)
Q Consensus 271 g~~~~A~~~~~~m~~ 285 (536)
|++++|.+.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.52 E-value=2.6e-06 Score=76.76 Aligned_cols=124 Identities=8% Similarity=-0.133 Sum_probs=49.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCC
Q 048749 230 LLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPD--SVTYATFVNALTKKGK 307 (536)
Q Consensus 230 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~ 307 (536)
...+...|++++|.++|+.+...-+-+. ....+...+.+.+++++|+..|+...... .|. ...+..+..++...|+
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCC
Confidence 3444445555555555544333212122 33333334444555555555444222110 000 1233344444444444
Q ss_pred HhHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 308 LGTALRLFQAMWEKGRKPD--VVTCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 308 ~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
+++|++.|++.......|. .........++.+.|+.++|..+|+++..
T Consensus 187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444442211122 11223333334444444444444444443
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.51 E-value=5.7e-06 Score=74.57 Aligned_cols=193 Identities=10% Similarity=-0.084 Sum_probs=143.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHH-------HHHHHccCCHHHHHHHHHhCCC-C-------CC----------
Q 048749 133 RFDWEAAYTFFKWVSREGDYSPGSNVFNAI-------LDVLGRARRFVELIQVFDEMPD-L-------VN---------- 187 (536)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~-~-------~~---------- 187 (536)
.+++..|++.|..+.+.. +-....|+-+ ..++.+.++..++...+..-.. . .+
T Consensus 19 ~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred CCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 579999999999999974 5568889888 5777777777777666655441 0 11
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCC--HHHH
Q 048749 188 -----EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYD--IKTM 260 (536)
Q Consensus 188 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 260 (536)
...+-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.......|. ...+
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~ 174 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAG 174 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHH
Confidence 2344556788889999999999999888754 544355666678899999999999998643321221 3478
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHH
Q 048749 261 NIILNGWCVLGNVYEAKRFWKDIIKSKCEPD--SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCN 331 (536)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 331 (536)
..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++... .|+...+.
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~ 245 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAA 245 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHH
Confidence 8889999999999999999999885433253 346667778899999999999999999985 34433333
No 135
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.49 E-value=2.3e-06 Score=67.87 Aligned_cols=108 Identities=8% Similarity=-0.013 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
...+......|.+.|++++|++.|++.. .+.+...|..+..+|.+.|++++|++.|++.++.. +.+...|..+..++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 3456667777888888888888888766 66777788888888888888888888888877765 45677777788888
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIIL 264 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 264 (536)
...|++++|...|++..+-.|.+...+..|.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 8888888888888775433344555554443
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.48 E-value=1.6e-06 Score=75.19 Aligned_cols=155 Identities=14% Similarity=0.029 Sum_probs=84.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC------CCCCCHHHHHHHHHHHHhcCCH
Q 048749 200 AAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKN------EFGYDIKTMNIILNGWCVLGNV 273 (536)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~ 273 (536)
..|++++|.+.++.+.. .......++..+...+...|++++|...+++... ..+....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333222 1112334445555555555555555555554211 1112334566666677777777
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCC
Q 048749 274 YEAKRFWKDIIKS----KCEP--DSVTYATFVNALTKKGKLGTALRLFQAMWEKGR-KPD----VVTCNCIIDALCFKKR 342 (536)
Q Consensus 274 ~~A~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~ 342 (536)
++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+... ..+ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777665542 1111 134566667777777888888877777664210 111 2235667777888888
Q ss_pred hHHHHHHHHHHHH
Q 048749 343 IPEALEVLREMKN 355 (536)
Q Consensus 343 ~~~A~~~~~~m~~ 355 (536)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888876643
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.47 E-value=2.4e-06 Score=68.12 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=9.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHH
Q 048749 295 YATFVNALTKKGKLGTALRLFQAM 318 (536)
Q Consensus 295 ~~~li~~~~~~g~~~~a~~~~~~m 318 (536)
+..+..++...|++++|.+.|++.
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333333333333333
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.46 E-value=2.5e-06 Score=67.62 Aligned_cols=118 Identities=8% Similarity=-0.015 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
+...+..+...+...|++++|...|++.. .+.+...|..+...+...|++++|++.+++..+.. +.+...+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 45667777788888888888888888766 55677788888888888888888888888877754 4457777778888
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNV 273 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 273 (536)
+...|++++|...++......+.+...+..+...+.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888875433355677777777777766653
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.44 E-value=6.3e-06 Score=65.57 Aligned_cols=119 Identities=13% Similarity=0.034 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048749 255 YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCII 334 (536)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 334 (536)
.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|++.+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345556666666666666666666666665543 2345556666666666666666666666666542 22455566666
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048749 335 DALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIK 376 (536)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 376 (536)
.++.+.|++++|.+.|++..+.... +...+..+...+.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 6666666666666666666544211 2344445555554443
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.44 E-value=1.9e-06 Score=72.93 Aligned_cols=117 Identities=5% Similarity=0.045 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhcCCH--HHHHH
Q 048749 202 HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG-WCVLGNV--YEAKR 278 (536)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~A~~ 278 (536)
|++++|++.+++..+.. +.+...+..+...+...|++++|...|+......+.+...+..+... |...|++ ++|..
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 44444444444444332 23344444444444444444444444444322222344444444444 4444554 55555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 279 FWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 279 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
.+++..+.. +.+...+..+...+...|++++|...|++..+
T Consensus 103 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 103 MIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555554433 22344444455555555555555555555544
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.43 E-value=6.3e-07 Score=73.57 Aligned_cols=100 Identities=11% Similarity=-0.040 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048749 186 VNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN 265 (536)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 265 (536)
.+...|..+...+.+.|++++|++.|++..+.. +.+...|..+..++...|++++|...|++...-.+.+...|..+..
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 344556666666667777777777777666654 4455666666666666666666666666643333445556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 048749 266 GWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~~~ 286 (536)
+|.+.|++++|...|+...+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666554
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.42 E-value=6.7e-07 Score=82.30 Aligned_cols=192 Identities=13% Similarity=0.026 Sum_probs=118.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
+...+..+...+.+.|++++|+..|++.. .+.+...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 55677778888888888888888888776 55677888888888888888888888888887754 4567778888888
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 048749 233 LCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTAL 312 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 312 (536)
+...|++++|...|+......+.+...+...+....+ ..++.. +........+.+......+ ..+ ..|+.++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 8888888888888877421101010011111111111 111111 2222333334444443333 222 268888888
Q ss_pred HHHHHHHHcCCCCCHh-hHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 048749 313 RLFQAMWEKGRKPDVV-TCNCIIDALCFK-KRIPEALEVLREMKN 355 (536)
Q Consensus 313 ~~~~~m~~~g~~p~~~-~~~~li~~~~~~-g~~~~A~~~~~~m~~ 355 (536)
+.++...+. .|+.. ....+-..+.+. +.+++|.++|..+.+
T Consensus 156 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888776654 44433 333343344444 667889999987764
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.41 E-value=9.1e-07 Score=75.00 Aligned_cols=119 Identities=8% Similarity=0.137 Sum_probs=67.4
Q ss_pred ccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 048749 168 RARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW-LCRYKHV--EVA 242 (536)
Q Consensus 168 ~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~~~~--~~a 242 (536)
..|++++|...|++.. .+.+...|..+...|...|++++|++.|++..+.. +.+...+..+..+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3455555555555544 44455566666666666666666666666655543 3345555555555 5566665 666
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048749 243 ETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK 287 (536)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 287 (536)
...++......+.+...+..+...|...|++++|...|++..+..
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 666666433334455666666666777777777777777666553
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.38 E-value=6.2e-07 Score=77.70 Aligned_cols=164 Identities=9% Similarity=-0.074 Sum_probs=73.2
Q ss_pred HHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 048749 163 LDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVE 240 (536)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 240 (536)
+......|+++++.+.++.-. .......+..+...+...|++++|++.|++..+..- .+. .+... ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~-~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTE-EWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCT-TCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-ccc-ccchh--------hHH
Confidence 334444556666655555332 122344566777777788888888888887776431 111 00000 000
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 241 VAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
.-. . .....+|..+..+|.+.|++++|+..++...+.. +.+...+..+..+|...|++++|.+.|++..+
T Consensus 81 ~~~---~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 81 DKK---K------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHH---H------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHH---H------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 000 0 0012344445555555555555555555555443 23444555555555555555555555555554
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChHHHH
Q 048749 321 KGRKPDVVTCNCIIDALCFKKRIPEAL 347 (536)
Q Consensus 321 ~g~~p~~~~~~~li~~~~~~g~~~~A~ 347 (536)
.. +.+...+..+..++...++.+++.
T Consensus 151 ~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 151 LN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 31 123444444555555544444444
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.37 E-value=9.3e-06 Score=76.72 Aligned_cols=141 Identities=8% Similarity=0.030 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHH
Q 048749 170 RRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD--------------LSAFQNLLLWL 233 (536)
Q Consensus 170 g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~ll~~~ 233 (536)
+++++|...|+... .+.+...|..+...+.+.|++++|++.|++..+..-... ..+|..+..++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554433 223455777778888888888888888888776542111 23444444444
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTA 311 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 311 (536)
.+.|++++|...+++.....+.+..+|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|+.+++
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444322223344444444444444444444444444444332 22333444444444444444443
No 146
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.36 E-value=5e-06 Score=68.11 Aligned_cols=99 Identities=13% Similarity=0.053 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048749 256 DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIID 335 (536)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 335 (536)
+...+..+...+.+.|++++|...|++..... +-+...|..+..+|...|++++|+..|++..+.. +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 44556666666667777777777777766654 3456666666677777777777777777766642 224556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 048749 336 ALCFKKRIPEALEVLREMKNR 356 (536)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~ 356 (536)
+|.+.|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 677777777777777766654
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.34 E-value=3.9e-06 Score=68.69 Aligned_cols=98 Identities=10% Similarity=-0.000 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048749 256 DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIID 335 (536)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 335 (536)
+...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|+..|++..... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33444445555555555555555555554443 3344555555555555555555555555555432 113344444555
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 048749 336 ALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~ 355 (536)
+|...|++++|...|+...+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555443
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.33 E-value=8.1e-06 Score=77.15 Aligned_cols=129 Identities=8% Similarity=0.004 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVN---------------EKTYGILLNRYAAAHMVEEAIGVFDRRKEF 217 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 217 (536)
+...+..+...|.+.|++++|+..|++.. .+.+ ..+|..+..+|.+.|++++|++.|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46678889999999999999999999877 4344 589999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 048749 218 GELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEA-KRFWKDII 284 (536)
Q Consensus 218 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 284 (536)
. +.+..++..+..++...|++++|...|++.....+.+..++..+...+.+.|+.++| ...|+.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 567889999999999999999999999996544466888999999999999999988 44666664
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=1.9e-05 Score=61.05 Aligned_cols=97 Identities=11% Similarity=-0.032 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
..|..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++|...+++.....+.+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344455555555555555555555555433 2344455555555555555555555555532222334555555566666
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 048749 269 VLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~~ 286 (536)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 666666666666665544
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.32 E-value=1.9e-06 Score=70.64 Aligned_cols=62 Identities=10% Similarity=-0.124 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048749 257 IKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMW 319 (536)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 319 (536)
...|..+..+|...|++++|...|++..... +.+...|..+..+|...|++++|.+.|+...
T Consensus 55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333333344444444443333322 1222333333334444444444444444333
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=2.3e-05 Score=60.63 Aligned_cols=94 Identities=10% Similarity=-0.054 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048749 226 FQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKK 305 (536)
Q Consensus 226 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 305 (536)
+..+...+...|++++|...++......+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence 33444444444555555554444322223344444444444444555555555554444432 22344444444444455
Q ss_pred CCHhHHHHHHHHHHH
Q 048749 306 GKLGTALRLFQAMWE 320 (536)
Q Consensus 306 g~~~~a~~~~~~m~~ 320 (536)
|++++|.+.++...+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555544444
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.27 E-value=2.1e-06 Score=74.24 Aligned_cols=155 Identities=13% Similarity=0.007 Sum_probs=93.0
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC--------------HHHHHHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCE-PD--------------SVTYATF 298 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~--------------~~~~~~l 298 (536)
...|+++.+.+.++............+..+...+.+.|++++|...|++..+.... ++ ...|..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 34445555544443311111123445666777777888888888888887764311 10 2677778
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 299 VNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRM 378 (536)
Q Consensus 299 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 378 (536)
..+|...|++++|+..++...+.. +.+...+..+..+|...|++++|...|++..+.... +...+..+..++...++.
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887752 335677777888888888888888888887765322 566677777777766666
Q ss_pred HHHH-HHHHHHHh
Q 048749 379 ETVY-EYLDEMEQ 390 (536)
Q Consensus 379 ~~A~-~~~~~m~~ 390 (536)
+++. ..+..|..
T Consensus 173 ~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 173 RKKDKLTFGGMFD 185 (198)
T ss_dssp HC-----------
T ss_pred HHHHHHHHHHHhc
Confidence 6655 44554443
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.1e-05 Score=63.79 Aligned_cols=95 Identities=7% Similarity=-0.070 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV 269 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 269 (536)
.|..+...+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|...++......+.+...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44445555555555555555555555443 33445555555555555555555555555322223445555555555556
Q ss_pred cCCHHHHHHHHHHHHH
Q 048749 270 LGNVYEAKRFWKDIIK 285 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~ 285 (536)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 6666666666555544
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.25 E-value=6.5e-06 Score=66.81 Aligned_cols=95 Identities=13% Similarity=-0.119 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV 269 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 269 (536)
.+..+...+.+.|++++|+..|++..... +.+...|..+..++.+.|++++|...|+......+.+...+..+..+|..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34444445555555555555555554433 33444444555555555555555555554322223344445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 048749 270 LGNVYEAKRFWKDIIK 285 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~ 285 (536)
.|++++|...|+...+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555443
No 155
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.24 E-value=0.0012 Score=61.30 Aligned_cols=230 Identities=11% Similarity=0.041 Sum_probs=136.5
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--H
Q 048749 241 VAETFFESEKNEFGYDIKTMNIILNGWCVLGN----------VYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGK--L 308 (536)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~ 308 (536)
+|..+++.+....+.+..+|+.--......+. +++++.+++.+.... +.+..+|+.-...+.+.++ +
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccH
Confidence 45555555443334444455443333332222 567778888777665 5577777777767777773 7
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------------
Q 048749 309 GTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKR-IPEALEVLREMKNRGCLPNVTTYNSLIKHLCKI------------ 375 (536)
Q Consensus 309 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~------------ 375 (536)
++++.+++.+.+.... |...|+.-...+.+.|. ++++++.++.+.+..+. |...|+.....+.+.
T Consensus 127 ~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~ 204 (331)
T 3dss_A 127 ARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRL 204 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccccccccc
Confidence 8888888888886433 66777776666777777 47888888888776544 777777766666554
Q ss_pred --CCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChhHHHH
Q 048749 376 --KRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCK-MSTDTYNVILKLYVNWDCEDKVRH 452 (536)
Q Consensus 376 --~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~ 452 (536)
+.++++++.+.+.....+ -|...|+.+-..+.+. .|.. .+ -.+.+.++++++
T Consensus 205 ~~~~~~eEle~~~~ai~~~P---~d~SaW~Y~r~ll~~~------------~~~~~~~----------~~~~~~l~~el~ 259 (331)
T 3dss_A 205 PENVLLKELELVQNAFFTDP---NDQSAWFYHRWLLGAG------------SGRCELS----------VEKSTVLQSELE 259 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHSS------------SCGGGCC----------HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhc------------cCccccc----------hHHHHHHHHHHH
Confidence 346778888887777541 2333333221111111 0000 00 001244678888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 048749 453 TWEEMEKKGMGPDQRSYTVMIHG-----LYDKGRLEDALSYFHEMRLKGMVPEPRT 503 (536)
Q Consensus 453 ~~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~~t 503 (536)
.++++.+. .||. .|..+-.+ ....|..+++..++.++++ +.|...-
T Consensus 260 ~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~ 310 (331)
T 3dss_A 260 SCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA 310 (331)
T ss_dssp HHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHH
T ss_pred HHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhh
Confidence 88888876 4554 34432222 2245777888888888886 4555443
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.23 E-value=0.00031 Score=65.17 Aligned_cols=165 Identities=7% Similarity=-0.069 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARR----------FVELIQVFDEMP--DLVNEKTYGILLNRYAAAH 202 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g 202 (536)
--+.|+++++.+...+ +-+..+|+.--.++...+. +++++.+++.+. .+.+..+|+.-...+...|
T Consensus 45 ~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 45 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp CSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccC
Confidence 3457899999998864 4567778877666655444 577888888777 7778888888777777777
Q ss_pred --CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---------
Q 048749 203 --MVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKH-VEVAETFFESEKNEFGYDIKTMNIILNGWCVL--------- 270 (536)
Q Consensus 203 --~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--------- 270 (536)
.+++++++++++.+.. +-|..+|+.-.-.+...|. .+++.+.++.+....+.|..+|+.....+.+.
T Consensus 123 ~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 123 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-----
T ss_pred cccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccc
Confidence 4788888888888766 5667777766666667776 47777777775444456777777666655544
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048749 271 -----GNVYEAKRFWKDIIKSKCEPDSVTYATFVNALT 303 (536)
Q Consensus 271 -----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 303 (536)
+.++++++.++..+... +-|..+|+-+-..+.
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG 238 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33566666666666544 345555554433333
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.23 E-value=2.8e-05 Score=61.39 Aligned_cols=95 Identities=12% Similarity=-0.089 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048749 225 AFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTK 304 (536)
Q Consensus 225 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 304 (536)
.+..+...+.+.|++++|...|++.....+.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 344444455555555555555555322223445555555555555555555555555555443 2334455555555555
Q ss_pred cCCHhHHHHHHHHHHH
Q 048749 305 KGKLGTALRLFQAMWE 320 (536)
Q Consensus 305 ~g~~~~a~~~~~~m~~ 320 (536)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555555544
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.21 E-value=1.2e-05 Score=61.56 Aligned_cols=93 Identities=13% Similarity=0.003 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHH
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGY--DIKTMNIILNGWC 268 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~ 268 (536)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.....+. +...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 3334444444444444444444444332 223333333344444444444444444432221122 3334444444444
Q ss_pred hc-CCHHHHHHHHHHHH
Q 048749 269 VL-GNVYEAKRFWKDII 284 (536)
Q Consensus 269 ~~-g~~~~A~~~~~~m~ 284 (536)
+. |++++|.+.++...
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAK 104 (112)
T ss_dssp TCSSCSHHHHHHHHHHG
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 44 44444444444443
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.20 E-value=2e-05 Score=63.84 Aligned_cols=97 Identities=7% Similarity=-0.044 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048749 257 IKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDA 336 (536)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 336 (536)
...+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|+..|+...... +.+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3344445555555666666666666555543 3345555555555666666666666666655542 2234445555555
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 048749 337 LCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~ 355 (536)
|...|++++|...|+...+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5666666666666655543
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.19 E-value=1.9e-05 Score=62.44 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCC---CC----HHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFG---YD----IKTMN 261 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~----~~~~~ 261 (536)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++......+ ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555556666666666666666655543 33445555555555555555555555555321111 11 44555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 262 IILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 262 ~li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
.+...|...|++++|.+.|+...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555555666666666666555543
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.18 E-value=2.4e-05 Score=59.84 Aligned_cols=93 Identities=15% Similarity=0.021 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC--CHhhHHHHHHHH
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKP--DVVTCNCIIDAL 337 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~ 337 (536)
+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|.+.+++..+.. +. +...+..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 3344444444444444444444444332 2233344444444444444444444444444421 11 233344444444
Q ss_pred Hhc-CChHHHHHHHHHHH
Q 048749 338 CFK-KRIPEALEVLREMK 354 (536)
Q Consensus 338 ~~~-g~~~~A~~~~~~m~ 354 (536)
.+. |++++|.+.++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp TTCSSCSHHHHHHHHHHG
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 444 44444444444443
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.16 E-value=4.5e-05 Score=61.01 Aligned_cols=97 Identities=13% Similarity=-0.030 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNG 266 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 266 (536)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|+++.|...++......+.+...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 33444444444444444444444444444432 22333444444444444444444444444222222234444444444
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 048749 267 WCVLGNVYEAKRFWKDII 284 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~ 284 (536)
|...|++++|...|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 444444444444444443
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=7.6e-05 Score=60.45 Aligned_cols=98 Identities=12% Similarity=0.007 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHH
Q 048749 187 NEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD----LSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNI 262 (536)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 262 (536)
+...+..+...+...|++++|++.|++..+.. |+ ...+..+...+...|++++|...++......+.+...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 44445555555555555555555555554432 33 3344444444455555555555554432222334444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 263 ILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
+..+|...|++++|...|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555555555555555555555443
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.15 E-value=3.6e-05 Score=64.08 Aligned_cols=97 Identities=12% Similarity=-0.069 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
..|..+...+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|...|++.....+.+...|..+..+|.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345555555555555555555555555543 3345555555555555555555555555532222344555556666666
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 048749 269 VLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~~ 286 (536)
..|++++|...|++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 666666666666655543
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.14 E-value=5.8e-05 Score=59.73 Aligned_cols=96 Identities=10% Similarity=0.087 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCCC----HhhHHH
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKG--RKPD----VVTCNC 332 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~~~ 332 (536)
++..+...+.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|++.+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445555555555555555555555443 2344555555555555555555555555554421 0111 123444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 048749 333 IIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
+..++...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555555555555443
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.13 E-value=4.2e-05 Score=63.67 Aligned_cols=97 Identities=8% Similarity=-0.111 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048749 223 LSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNAL 302 (536)
Q Consensus 223 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 302 (536)
...+..+...+.+.|++++|...|++.....+.+...|..+..+|.+.|++++|+..|++.++.. +-+...|..+..+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33444555555556666666665555332223455555555555555666666666555555543 23445555555555
Q ss_pred HhcCCHhHHHHHHHHHHH
Q 048749 303 TKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 303 ~~~g~~~~a~~~~~~m~~ 320 (536)
...|++++|.+.|++..+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 555555555555555554
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.13 E-value=2.3e-05 Score=61.92 Aligned_cols=109 Identities=10% Similarity=0.066 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC--CCC----HhhHHH
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGR--KPD----VVTCNC 332 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~~~ 332 (536)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44455555555666666666665555443 33445555555556666666666666655554311 111 445555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048749 333 IIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIK 370 (536)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 370 (536)
+..++.+.|++++|.+.|+...+.. |+...+..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 5666666666666666666665532 34444443333
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.11 E-value=6e-05 Score=59.62 Aligned_cols=100 Identities=10% Similarity=0.084 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----HHHH
Q 048749 292 SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGC--LPN----VTTY 365 (536)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~ 365 (536)
..++..+...+.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|++.+++..+... .++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3467788899999999999999999999863 33677899999999999999999999998875421 111 3467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 366 NSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 366 ~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
..+..++...|++++|++.|++.....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 778888999999999999999988754
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=6.8e-05 Score=60.75 Aligned_cols=109 Identities=6% Similarity=-0.139 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 048749 154 PGSNVFNAILDVLGRARRFVELIQVFDEMP-DLVN----EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQN 228 (536)
Q Consensus 154 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 228 (536)
.+...+..+...+.+.|++++|...|++.. ..++ ...|..+...|...|++++|++.+++..+.. +.+...+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 355666666777777777777777777655 2233 4566666777777777777777777766653 335666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHH
Q 048749 229 LLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNII 263 (536)
Q Consensus 229 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 263 (536)
+..++...|++++|...|++.....+.+...+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 139 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 67777777777777777776433223344444333
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.10 E-value=5.9e-05 Score=60.31 Aligned_cols=98 Identities=15% Similarity=0.004 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048749 256 DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIID 335 (536)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 335 (536)
+...+..+...+...|++++|...|+...+.. +.+...|..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45555566666666666666666666655543 3345556666666666666666666666665542 224555666666
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 048749 336 ALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~ 355 (536)
+|...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666543
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=0.00017 Score=70.60 Aligned_cols=195 Identities=12% Similarity=0.019 Sum_probs=118.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhc---CCCCCC
Q 048749 196 NRYAAAHMVEEAIGVFDRRKEFGELDD----------------LSAFQNLLLWLCRYKHVEVAETFFESEK---NEFGYD 256 (536)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~ 256 (536)
+.+.+.|++++|++.|..+.+..-... ...+..+...|.+.|++++|.+.+.... ..+...
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 344556666666666666654321110 1235566677777777777777766632 111111
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc--CCC--
Q 048749 257 ---IKTMNIILNGWCVLGNVYEAKRFWKDIIK----SKCEPD-SVTYATFVNALTKKGKLGTALRLFQAMWEK--GRK-- 324 (536)
Q Consensus 257 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~-- 324 (536)
..+.+.+-..+...|+.+.|..+++.... .+..+. ..++..+...|...|++++|..+++++... +..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 11233333344456788888888777653 222222 356677888888888888888888877653 111
Q ss_pred C-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 325 P-DVVTCNCIIDALCFKKRIPEALEVLREMKNR----GCLPN--VTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 325 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
+ ...++..++..|...|++++|..++++.... +..+. ...+..+...+...+++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2346777888888889999998888876432 11111 34556666677778888888888777654
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.00 E-value=5.2e-05 Score=62.38 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----Hh
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSKC-EPD----SVTYATFVNALTKKGKLGTALRLFQAMWEKGR-KPD----VV 328 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~ 328 (536)
++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|.+.+++..+... ..+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455566666667777777776666554210 011 13566667777777777777777777655310 011 34
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 329 TCNCIIDALCFKKRIPEALEVLREMKNR----GCLP-NVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
++..+...+...|++++|.+.+++..+. +..+ ....+..+...|...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666777778888888888888776532 1111 1345677777888889999998888877653
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.99 E-value=5.5e-05 Score=59.25 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=19.7
Q ss_pred HHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 165 VLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRK 215 (536)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (536)
.+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..|++..
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 78 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333344444444443333 23333333333333333344444443333333
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.98 E-value=5.5e-05 Score=59.28 Aligned_cols=90 Identities=12% Similarity=-0.067 Sum_probs=43.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 194 LLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNV 273 (536)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 273 (536)
+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...|++....-+.+...+..+..+|...|++
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3344445555555555555554433 234444444555555555555555555543222233444455555555555555
Q ss_pred HHHHHHHHHHH
Q 048749 274 YEAKRFWKDII 284 (536)
Q Consensus 274 ~~A~~~~~~m~ 284 (536)
++|...|++..
T Consensus 102 ~~A~~~~~~al 112 (121)
T 1hxi_A 102 NAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.97 E-value=4.7e-05 Score=62.62 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRK 215 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (536)
++..+...+...|++++|++.+++..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al 36 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRL 36 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34445555555555555555555544
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.00022 Score=69.77 Aligned_cols=187 Identities=9% Similarity=-0.023 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCH---------------HHHHHHHHHHHccCCHHHHHHHHHhCC----CCCCH----HH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGS---------------NVFNAILDVLGRARRFVELIQVFDEMP----DLVNE----KT 190 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~----~~ 190 (536)
|++++|++.|..+.+...-..+. .++..+...|.+.|++++|.+.+..+. ...+. .+
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 97 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVL 97 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 69999999999998764222221 247788899999999999999998876 22222 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhc---CC---CCCCHHH
Q 048749 191 YGILLNRYAAAHMVEEAIGVFDRRKE----FGELDD-LSAFQNLLLWLCRYKHVEVAETFFESEK---NE---FGYDIKT 259 (536)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~---~~~~~~~ 259 (536)
.+.+-..+...|+.++|.+++..... .+..+. ..++..+...+...|++++|..+++... .+ -+....+
T Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 177 (434)
T 4b4t_Q 98 KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDV 177 (434)
T ss_dssp HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 33333444456888999888877653 232333 4567778888888888888888887741 11 1223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKS----KCEPD--SVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
+..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 178 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 178 HLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 788888888888888888888776542 11111 23455556666777888888877776654
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.93 E-value=0.00032 Score=55.22 Aligned_cols=92 Identities=12% Similarity=0.007 Sum_probs=43.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCC---HHHHHHHHHHH
Q 048749 194 LLNRYAAAHMVEEAIGVFDRRKEFGELDDL---SAFQNLLLWLCRYKHVEVAETFFESEKNEFGYD---IKTMNIILNGW 267 (536)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~ 267 (536)
+...+...|++++|++.|++..+.. +.+. ..+..+..++.+.|++++|...|+......+.+ ..++..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3444555555555555555555432 1111 244444445555555555555555432222222 34444455555
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 048749 268 CVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 268 ~~~g~~~~A~~~~~~m~~~ 286 (536)
...|++++|...|+.+.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555443
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.92 E-value=0.00015 Score=57.18 Aligned_cols=87 Identities=11% Similarity=-0.067 Sum_probs=42.5
Q ss_pred HHHHHHccCCHHHHHHHHHhCC--CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHH
Q 048749 162 ILDVLGRARRFVELIQVFDEMP--DLVNE---KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDD---LSAFQNLLLWL 233 (536)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~~~--~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~ 233 (536)
+...+.+.|++++|...|+.+. .+.+. ..+..+..++...|++++|+..|++..+.. +.+ ..++..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 3444445555555555555443 22222 344445555555555555555555555433 112 34444455555
Q ss_pred HhcCCHHHHHHHHHHh
Q 048749 234 CRYKHVEVAETFFESE 249 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~ 249 (536)
.+.|++++|...|+.+
T Consensus 87 ~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 5555555555555553
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.90 E-value=0.00012 Score=72.34 Aligned_cols=155 Identities=10% Similarity=-0.026 Sum_probs=78.0
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 171 RFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFES 248 (536)
Q Consensus 171 ~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 248 (536)
++++|.+.|+... .+.....|..+...+.+.|++++|+..|++.++..-.... + ..+...+. .
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~~~-~- 313 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESKAS-E- 313 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHHHH-H-
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHHHH-H-
Confidence 4445555454333 2234456777888888888888888888887764311110 0 00000000 0
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHh
Q 048749 249 EKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVV 328 (536)
Q Consensus 249 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 328 (536)
+....+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|++..+.. +.+..
T Consensus 314 -----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~ 386 (457)
T 1kt0_A 314 -----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKA 386 (457)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----C
T ss_pred -----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH
Confidence 0012344555555555555555555555555443 2345555555555555555555555555555531 11334
Q ss_pred hHHHHHHHHHhcCChHHHH
Q 048749 329 TCNCIIDALCFKKRIPEAL 347 (536)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~ 347 (536)
.+..+..++.+.++.+++.
T Consensus 387 a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555443
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.88 E-value=0.00017 Score=68.97 Aligned_cols=137 Identities=8% Similarity=-0.077 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCV 269 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 269 (536)
.|..+...+.+.|++++|++.|++.++.- + ........+ ......+.+..+|..+..+|.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~----------~~~~~~~~~-------~~~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--E----------GSRAAAEDA-------DGAKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H----------HHHHHSCHH-------HHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--h----------cCccccChH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 46667777778888888888887766520 0 000000000 0000112234556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHH
Q 048749 270 LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEAL 347 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 347 (536)
.|++++|+..+++..+.. +.+...|..+..+|...|++++|++.|++..+.. +.+...+..+...+.+.++.+++.
T Consensus 286 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666543 2345566666666666666666666666666542 124445555555555555555544
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.88 E-value=2.9e-05 Score=60.43 Aligned_cols=85 Identities=14% Similarity=-0.013 Sum_probs=40.9
Q ss_pred CCHhHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 306 GKLGTALRLFQAMWEKG--RKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYE 383 (536)
Q Consensus 306 g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~ 383 (536)
|++++|+..|++..+.+ -+.+...+..+..+|.+.|++++|+..|++..+.... +...+..+..++.+.|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 44555555555554432 1112334445555555555555555555555544322 34455555555555555555555
Q ss_pred HHHHHHhc
Q 048749 384 YLDEMEQK 391 (536)
Q Consensus 384 ~~~~m~~~ 391 (536)
.|.+....
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555443
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.88 E-value=3.6e-05 Score=76.39 Aligned_cols=119 Identities=18% Similarity=0.089 Sum_probs=80.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048749 196 NRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYE 275 (536)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 275 (536)
..+.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|...+++.....+.+..+|..+..+|...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34556677888888887777654 44567777777777888888888887777544445567778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHhHHHHHHH
Q 048749 276 AKRFWKDIIKSKCEPDSVTYATFVNA--LTKKGKLGTALRLFQ 316 (536)
Q Consensus 276 A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 316 (536)
|.+.|++..+.. +-+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888877654 2233344444444 777788888888877
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.85 E-value=0.00015 Score=71.60 Aligned_cols=122 Identities=9% Similarity=-0.049 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMP--DLVN---------------EKTYGILLNRYAAAHMVEEAIGVFDRRKEF 217 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 217 (536)
....|..+...|.+.|++++|...|++.. .+.+ ...|..+..+|.+.|++++|+..|++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 35678888999999999999999999876 3233 466777777777777777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 218 GELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAK 277 (536)
Q Consensus 218 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 277 (536)
. +.+...|..+..+|...|++++|...|++.....+.+..++..+..++.+.++.++|.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3456666666666666666666666666654433445555666666666666655554
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.80 E-value=3.2e-05 Score=76.81 Aligned_cols=116 Identities=12% Similarity=-0.026 Sum_probs=56.6
Q ss_pred HHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048749 165 VLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVA 242 (536)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 242 (536)
.+.+.|++++|.+.|++.. .+.+..+|..+..+|.+.|++++|++.+++..+.. +.+..++..+..++.+.|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 3344555555555555544 34445555555555555555555555555555543 33445555555555555555555
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 048749 243 ETFFESEKNEFGYDIKTMNIILNG--WCVLGNVYEAKRFWK 281 (536)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 281 (536)
...|++.....+.+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555322112233333333333 555566666666655
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.76 E-value=2.7e-05 Score=60.61 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=40.9
Q ss_pred cCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048749 201 AHMVEEAIGVFDRRKEFG--ELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKR 278 (536)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 278 (536)
.|++++|+..|++..+.+ -+.+..++..+..++...|++++|...|++.....+.+..++..+..++.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 355555555555555532 122233444555555555555555555555332233345555555555555555555555
Q ss_pred HHHHHHH
Q 048749 279 FWKDIIK 285 (536)
Q Consensus 279 ~~~~m~~ 285 (536)
.|++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.75 E-value=0.0011 Score=67.01 Aligned_cols=171 Identities=7% Similarity=-0.073 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARR----------FVELIQVFDEMP--DLVNEKTYGILLNRYAAA 201 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~ 201 (536)
..-++|++.++.+.... +-+..+|+.--.++.+.|+ ++++++.++.+. .+.+..+|+.-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35578899999998864 5567889988888888777 899999999988 788999999998888899
Q ss_pred C--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc--------
Q 048749 202 H--MVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYK-HVEVAETFFESEKNEFGYDIKTMNIILNGWCVL-------- 270 (536)
Q Consensus 202 g--~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 270 (536)
| +++++++.++++.+.. +-|..+|+.-...+.+.| ..+++.+.++++-...+.|..+|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 9 7799999999999977 667888888888888888 888899988886655677888888877776653
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048749 271 ------GNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKL 308 (536)
Q Consensus 271 ------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 308 (536)
+.++++++.+++.+... +-|...|...-..+.+.++.
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 45677777777777654 44566777666666665553
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.73 E-value=0.00039 Score=57.46 Aligned_cols=115 Identities=14% Similarity=0.034 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 189 KTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
..+......+.+.|++++|++.|.+.++.- ............. ...+ .+.+..+|..+..+|.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~------------~~~~~~~~~~~~~--~~~~---~~~~~~~~~nla~~~~ 74 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRL------------DTLILREKPGEPE--WVEL---DRKNIPLYANMSQCYL 74 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHTSCTTSHH--HHHH---HHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------HHhcccCCCCHHH--HHHH---HHHHHHHHHHHHHHHH
Confidence 356666667777777777777777665430 0000000000000 0000 0123345555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 048749 269 VLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK 321 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (536)
+.|++++|+..++..++.. +.+...|..+..+|...|++++|...|+...+.
T Consensus 75 ~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 75 NIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 6666666666666555543 334555555566666666666666666655553
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.72 E-value=0.00042 Score=57.29 Aligned_cols=66 Identities=15% Similarity=0.070 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048749 291 DSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (536)
+...|..+..+|.+.|++++|+..++...+.. +.+...|..+..+|...|++++|...|++..+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 45788899999999999999999999999863 3467889999999999999999999999998763
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.72 E-value=0.00034 Score=66.76 Aligned_cols=138 Identities=11% Similarity=-0.039 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048749 226 FQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKK 305 (536)
Q Consensus 226 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 305 (536)
+..+...+.+.|++++|...|++.....+ .. ......+++.. .. +.+..+|..+..+|.+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~-~~----------~~~~~~~~~~~-------~~-~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVE-GS----------RAAAEDADGAK-------LQ-PVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HH----------HHHSCHHHHGG-------GH-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhh-cC----------ccccChHHHHH-------HH-HHHHHHHHHHHHHHHhc
Confidence 44566677777888888777766321100 00 00011111111 11 23457888999999999
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 306 GKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEY 384 (536)
Q Consensus 306 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~ 384 (536)
|++++|++.+++..+.. +.+...+..+..+|...|++++|++.|++..+.... +...+..+...+...++.+++.+.
T Consensus 287 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999863 336778889999999999999999999999876432 677788888888888888877653
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.69 E-value=0.0012 Score=66.69 Aligned_cols=173 Identities=9% Similarity=-0.056 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--
Q 048749 204 VEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKH----------VEVAETFFESEKNEFGYDIKTMNIILNGWCVLG-- 271 (536)
Q Consensus 204 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 271 (536)
.++|++.++++.+.. +-+..+|+.--.++...|+ ++++...++.+....+-+..+|+.-.-.+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 455666666666544 3334445444444444444 566666666644344556666666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----------
Q 048749 272 NVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKG-KLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFK---------- 340 (536)
Q Consensus 272 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---------- 340 (536)
+++++++.++++.+.. +.+..+|+.-...+.+.| .++++++.++++.+.... |...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 5577777777777665 446667766666666666 677777777777665332 555666555555542
Q ss_pred ----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048749 341 ----KRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMET 380 (536)
Q Consensus 341 ----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 380 (536)
+.++++++.+++....... |...|+-.-..+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4467777787777665332 56777776666666665333
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.63 E-value=0.00074 Score=54.11 Aligned_cols=112 Identities=9% Similarity=0.011 Sum_probs=83.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHH
Q 048749 270 LGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCF----KKRIPE 345 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~ 345 (536)
.+++++|.++|++..+.| .++.. |...|...+.+++|.++|++..+.| +...+..|-..|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 356778888888888777 34433 5566666677778888888887764 56667777777777 778888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 048749 346 ALEVLREMKNRGCLPNVTTYNSLIKHLCK----IKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~ 392 (536)
|++.|++..+.| +...+..|-..|.. .++.++|.++|++..+.+
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 888888887764 56777777777777 788888888888887776
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.63 E-value=0.00015 Score=68.48 Aligned_cols=146 Identities=10% Similarity=0.039 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP-DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCR 235 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 235 (536)
..+..+...+.+.|++++|...|++.. ..++... +...|+.+++...+. ...|..+..++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 345566667777777777777777654 2222210 111122222221110 0244555555566
Q ss_pred cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHhHHHHH
Q 048749 236 YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNA-LTKKGKLGTALRL 314 (536)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~a~~~ 314 (536)
.|++++|...++......+.+..+|..+..+|...|++++|...|++..+.. +-+...+..+... ....+..+.+.++
T Consensus 243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655332223455566666666666666666666666554432 1122333333333 2233445555556
Q ss_pred HHHHHH
Q 048749 315 FQAMWE 320 (536)
Q Consensus 315 ~~~m~~ 320 (536)
|..|..
T Consensus 322 ~~~~l~ 327 (338)
T 2if4_A 322 YKGIFK 327 (338)
T ss_dssp ------
T ss_pred HHHhhC
Confidence 655544
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.62 E-value=6.3e-05 Score=57.53 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048749 156 SNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEF 217 (536)
Q Consensus 156 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 217 (536)
...+..+...+.+.|++++|+..|++.. .+.+...|..+..++...|++++|++.|++..+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4455555566666666666666666554 4445555666666666666666666666665543
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.55 E-value=0.00027 Score=66.68 Aligned_cols=96 Identities=8% Similarity=-0.061 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 048749 294 TYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKH-L 372 (536)
Q Consensus 294 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~ 372 (536)
.|..+..+|.+.|++++|+..++...+.. +.+...|..+..+|...|++++|+..|++..+.... +...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 56666666777777777777777766642 224566666677777777777777777766543211 23333333333 2
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 048749 373 CKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 373 ~~~~~~~~A~~~~~~m~~~ 391 (536)
...+..+++..+|..|...
T Consensus 310 ~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHhhCC
Confidence 2334555566666666543
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.54 E-value=0.0025 Score=50.91 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 048749 430 STDTYNVILKLYVN----WDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYD----KGRLEDALSYFHEMRLKG 496 (536)
Q Consensus 430 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 496 (536)
+...+..|...|.. .+++++|.+.|++..+.| +...+..|-..|.. .++.++|.++|++..+.|
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 34455555555555 566666666666666654 45556666666666 667777777777766655
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.53 E-value=0.0012 Score=53.51 Aligned_cols=28 Identities=21% Similarity=-0.021 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEF 217 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 217 (536)
.+......+...|++++|++.|++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l 40 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI 40 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 3444555666667777777777766654
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00044 Score=52.61 Aligned_cols=95 Identities=7% Similarity=-0.019 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-------HH
Q 048749 430 STDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPE-------PR 502 (536)
Q Consensus 430 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 502 (536)
+...+..+...+...|++++|.+.|++..+.. +.+...|..+..++...|++++|++.+++.++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 45678888999999999999999999998763 336788999999999999999999999999874 455 44
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHh
Q 048749 503 TGILVNDMNIKLKERGEQGKKVIKL 527 (536)
Q Consensus 503 t~~~l~~~~~~~~~~~~a~~~~~~~ 527 (536)
.+..+..++...|..+++.+.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 5667777777777777776665554
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.48 E-value=0.00052 Score=67.74 Aligned_cols=125 Identities=7% Similarity=-0.054 Sum_probs=90.3
Q ss_pred HHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CC-CCC-HhhHHH
Q 048749 267 WCVLGNVYEAKRFWKDIIKS-----K-CEPD-SVTYATFVNALTKKGKLGTALRLFQAMWEK-----GR-KPD-VVTCNC 332 (536)
Q Consensus 267 ~~~~g~~~~A~~~~~~m~~~-----g-~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~-~~~~~~ 332 (536)
+...|++++|+.++++..+. | -.|+ ..+++.|..+|...|++++|+.++++..+. |- .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45688899998888877652 2 1222 357888888999999999999988887653 21 222 456888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 333 IIDALCFKKRIPEALEVLREMKN-----RGCL-PN-VTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
|...|...|++++|+.++++..+ .|.. |+ ..+.+.+-.++...+.+++|..+|..+.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999998887753 2322 22 344566667788888899999999888764
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.47 E-value=0.00038 Score=68.73 Aligned_cols=50 Identities=14% Similarity=0.007 Sum_probs=26.7
Q ss_pred HHccCCHHHHHHHHHhCC-------CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 166 LGRARRFVELIQVFDEMP-------DL---VNEKTYGILLNRYAAAHMVEEAIGVFDRRK 215 (536)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~-------~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (536)
+...|++++|+.++++.. .+ ....+++.|...|...|++++|+.++++.+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 378 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV 378 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345566666666555443 11 122345666666666666666666655543
No 200
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.43 E-value=0.0016 Score=52.90 Aligned_cols=61 Identities=18% Similarity=0.005 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CCCCC-HhhH----HHHHHHHHhcCChHHHHHHHHHHH
Q 048749 294 TYATFVNALTKKGKLGTALRLFQAMWEK-----GRKPD-VVTC----NCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 294 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444455555555555544444442 11232 2334 455555555555555555555553
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.36 E-value=0.0016 Score=47.20 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEF 217 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 217 (536)
..+..+...+.+.|++++|...|++.. .+.+...|..+...+...|++++|++.|++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445555555555555555555555544 3344555555555555555555555555555543
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.32 E-value=0.0018 Score=49.75 Aligned_cols=77 Identities=8% Similarity=-0.016 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 138 AAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRK 215 (536)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (536)
.|+..|+.+.+.. +.+...+..+..+|.+.|++++|+..|++.. .+.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3566666666653 4567777777777778888888887777766 55666777777777777777777777777766
Q ss_pred H
Q 048749 216 E 216 (536)
Q Consensus 216 ~ 216 (536)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.31 E-value=0.0022 Score=46.52 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFES 248 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 248 (536)
.|..+...+...|++++|++.|++..+.. +.+...+..+...+.+.|++++|...+++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444555555555555555555554432 22333444444444444444444444444
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.26 E-value=0.003 Score=48.44 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 048749 257 IKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQA 317 (536)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 317 (536)
...+..+...|...|++++|...|++..+.. +.+...|..+..++...|++++|...|++
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3333333334444444444444444333322 12233333333333334444444433333
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.15 E-value=0.0022 Score=47.88 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 255 YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
.+...+..+...|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345556666666666666666666666665544 22344566666666666666666666665544
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.05 E-value=0.0036 Score=46.68 Aligned_cols=87 Identities=11% Similarity=0.029 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHHHHHH
Q 048749 428 KMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKG-MVPEPRTGIL 506 (536)
Q Consensus 428 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ 506 (536)
+-+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++.++.. -.++.....-
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 3467888999999999999999999999998864 2256789999999999999999999999987641 1234444444
Q ss_pred HHHHHHhhh
Q 048749 507 VNDMNIKLK 515 (536)
Q Consensus 507 l~~~~~~~~ 515 (536)
+...+...+
T Consensus 83 l~~~l~~~~ 91 (100)
T 3ma5_A 83 LQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcc
Confidence 444444433
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.99 E-value=0.0023 Score=51.75 Aligned_cols=93 Identities=16% Similarity=0.101 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCH----------HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRF----------VELIQVFDEMP--DLVNEKTYGILLNRYAAAH 202 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g 202 (536)
.++.|++.++.+.+.. +.+...|+.+..++.+.+++ ++|+..|++.. .+.+..+|..+..+|...|
T Consensus 17 ~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 6788888888888764 56788888888888887765 47777777766 6667777888888877664
Q ss_pred -----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048749 203 -----------MVEEAIGVFDRRKEFGELDDLSAFQNLLL 231 (536)
Q Consensus 203 -----------~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 231 (536)
++++|++.|++.++. .|+...|...+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 677777777777764 355555544443
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.96 E-value=0.0013 Score=53.17 Aligned_cols=103 Identities=13% Similarity=0.029 Sum_probs=52.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 200 AAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRF 279 (536)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 279 (536)
+.+.+++|++.+++..+.. +.+...|..+..++...++++.+.... +.+++|+..
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al------------------------~~~~eAi~~ 68 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAK------------------------QMIQEAITK 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHH------------------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhH------------------------hHHHHHHHH
Confidence 3445566666666655544 445555555555555554433221111 014466666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcC-----------CHhHHHHHHHHHHHcCCCCCHhhH
Q 048749 280 WKDIIKSKCEPDSVTYATFVNALTKKG-----------KLGTALRLFQAMWEKGRKPDVVTC 330 (536)
Q Consensus 280 ~~~m~~~g~~~~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~g~~p~~~~~ 330 (536)
|++.++.. +-+..+|..+..+|...| ++++|++.|++..+ +.|+...|
T Consensus 69 le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y 127 (158)
T 1zu2_A 69 FEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHY 127 (158)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHH
Confidence 66665544 234455566666665543 56666666666655 24444333
No 209
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.92 E-value=0.09 Score=40.46 Aligned_cols=148 Identities=11% Similarity=0.021 Sum_probs=103.9
Q ss_pred HHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048749 191 YGILLNR--YAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWC 268 (536)
Q Consensus 191 ~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 268 (536)
...|+.+ +.-.|.+++..++..+... ..+..-||-++.-....-+-+-..+.++.+.+-+.. .
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi------------s 72 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL------------D 72 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG------------G
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCc------------H
Confidence 3444443 4556888888888888776 345666777776666777777777777776554432 2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 048749 269 VLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALE 348 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 348 (536)
.+|++......+-.+- .+..-+...++.+...|+-|+-.+++..+... .+|++...-.+..+|.+.|+..+|.+
T Consensus 73 ~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp GCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHH
Confidence 5666666666654432 24445666778888888888888888886543 56778888888889999999999999
Q ss_pred HHHHHHHCCCC
Q 048749 349 VLREMKNRGCL 359 (536)
Q Consensus 349 ~~~~m~~~g~~ 359 (536)
++.+.-+.|++
T Consensus 147 Ll~~AC~kG~k 157 (172)
T 1wy6_A 147 LLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHhhhH
Confidence 99888888764
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.78 E-value=0.084 Score=56.00 Aligned_cols=154 Identities=12% Similarity=0.071 Sum_probs=100.2
Q ss_pred HHHccCCHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 165 VLGRARRFVELIQ-VFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAE 243 (536)
Q Consensus 165 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 243 (536)
.....+++++|.+ ++..+ ++......+++.+.+.|.+++|+++.+.-. .-.......|+++.|.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i---~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV---EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC---CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHhcC---CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHH
Confidence 3345788888877 55443 213344777888888888888887663211 1133456788899888
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 048749 244 TFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGR 323 (536)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 323 (536)
++.+.+. +...|..+...+.+.|+++.|.+.|..+.+ |..+...+...|+.+...++-+.....|.
T Consensus 673 ~~~~~~~-----~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 673 DLLTDES-----AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHHTTCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhC-----cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 8865543 678899999999999999999999887642 34455555557777666655555554432
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 048749 324 KPDVVTCNCIIDALCFKKRIPEALEVLREM 353 (536)
Q Consensus 324 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (536)
++....+|.+.|++++|++++.++
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 233444455666666666666554
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.76 E-value=0.13 Score=47.89 Aligned_cols=65 Identities=14% Similarity=0.024 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 254 GYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344455444444444455555555555555443 4444444444455555555555555555444
No 212
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.68 E-value=0.12 Score=39.85 Aligned_cols=140 Identities=19% Similarity=0.171 Sum_probs=100.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHH
Q 048749 338 CFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPW 417 (536)
Q Consensus 338 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~ 417 (536)
.-.|..++..++..+.... .+..-||-+|--....-+-+-..++++.+-... | +..|++...+..
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF-----D-------is~C~NlKrVi~ 82 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF-----D-------LDKCQNLKSVVE 82 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS-----C-------GGGCSCTHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc-----C-------cHhhhcHHHHHH
Confidence 3467888888888887764 366677777777777777777777777664432 1 223444433333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048749 418 VLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGM 497 (536)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 497 (536)
.+ ...+ .+...++..++.....|+-|...++...+.. +-+|++...-.+..+|.+-|+..+|.+++.+.-++|+
T Consensus 83 C~---~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CG---VINN--TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HH---HHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HH---HHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 32 2222 2456778889999999999999999998654 3467889999999999999999999999999999887
Q ss_pred C
Q 048749 498 V 498 (536)
Q Consensus 498 ~ 498 (536)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.64 E-value=0.059 Score=50.19 Aligned_cols=74 Identities=9% Similarity=-0.084 Sum_probs=60.6
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHH
Q 048749 324 KPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFN 403 (536)
Q Consensus 324 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~ 403 (536)
+.+..+|..+...+...|++++|...++++...+ |+...|..+-..+.-.|++++|.+.|.+....+ |...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~----P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR----PGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCcChHH
Confidence 5577788887777777899999999999998875 788788778888889999999999999998865 6655544
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.32 E-value=0.28 Score=51.98 Aligned_cols=98 Identities=10% Similarity=0.049 Sum_probs=60.1
Q ss_pred HhcCCHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHH
Q 048749 268 CVLGNVYEAKR-FWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEA 346 (536)
Q Consensus 268 ~~~g~~~~A~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 346 (536)
...+++++|.+ ++..+ ++......++..+.+.|..++|+++.+.-. .-.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 34667777765 44111 112223566666777777777776553111 112334567888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 347 LEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEME 389 (536)
Q Consensus 347 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 389 (536)
.++.+.+ .+...|..+...+.+.++++.|.+.|.++.
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 7775443 266778888888888888888888887763
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.14 E-value=0.042 Score=53.25 Aligned_cols=99 Identities=11% Similarity=0.020 Sum_probs=73.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 048749 369 IKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKLYVNWDCED 448 (536)
Q Consensus 369 i~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 448 (536)
+..+.+.|++++|.+++++..+....+.... .+....+++.|..+|...|+++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~---------------------------h~~~~~~~~~L~~~y~~~g~~~ 346 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDI---------------------------NIYQLKVLDCAMDACINLGLLE 346 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT---------------------------SHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCcc---------------------------chHHHHHHHHHHHHHHhhccHH
Confidence 4456678899999999988876532111110 0113578899999999999999
Q ss_pred HHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 449 KVRHTWEEMEKK-----GM-GPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 449 ~A~~~~~~m~~~-----g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
+|+.++++..+- |- .|+ ..+++.|...|...|++++|+.++++.++
T Consensus 347 eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 347 EALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999987642 21 233 35688999999999999999999998764
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.04 E-value=0.015 Score=56.39 Aligned_cols=87 Identities=9% Similarity=-0.018 Sum_probs=66.7
Q ss_pred hcCCHhHHHHHHHHHHHc---CCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCC-HHHHHHHH
Q 048749 304 KKGKLGTALRLFQAMWEK---GRKPD----VVTCNCIIDALCFKKRIPEALEVLREMKN-----RGC-LPN-VTTYNSLI 369 (536)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~-~~~~~~li 369 (536)
..|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++..+ .|. .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999887663 12222 35788899999999999999999998753 232 233 56788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 048749 370 KHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 370 ~~~~~~~~~~~A~~~~~~m~~ 390 (536)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988754
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.04 E-value=0.02 Score=55.46 Aligned_cols=81 Identities=4% Similarity=-0.040 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHhC--CCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHhCC-------C--CC-CHHHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSRE--GDYSPG----SNVFNAILDVLGRARRFVELIQVFDEMP-------D--LV-NEKTYGILLNR 197 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~--~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~--~~-~~~~~~~li~~ 197 (536)
|++++|+.+++.+... .-+.++ ..+++.+..+|...|++++|+.++++.. . .| ...+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4556666666554331 111111 2445555556666666666555555443 1 11 12234555555
Q ss_pred HHhcCCHHHHHHHHHHH
Q 048749 198 YAAAHMVEEAIGVFDRR 214 (536)
Q Consensus 198 ~~~~g~~~~A~~~~~~m 214 (536)
|...|++++|+.+|++.
T Consensus 392 ~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 392 YMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHH
Confidence 55555555555555443
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.99 E-value=0.023 Score=41.78 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=26.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 266 GWCVLGNVYEAKRFWKDIIKSKCEPDSV-TYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
.+.+.|++++|...|++..+.. +.+.. .|..+..++...|++++|.+.|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444455555555555554432 22333 444445555555555555555555544
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.96 E-value=0.031 Score=54.14 Aligned_cols=92 Identities=15% Similarity=0.011 Sum_probs=71.0
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcC---CCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCC-HHH
Q 048749 299 VNALTKKGKLGTALRLFQAMWEKG---RKPD----VVTCNCIIDALCFKKRIPEALEVLREMKN-----RGC-LPN-VTT 364 (536)
Q Consensus 299 i~~~~~~g~~~~a~~~~~~m~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~-~~~ 364 (536)
+..+.+.|++++|+.++++..+.. +.|+ ..+++.+...|...|++++|+.++++..+ .|. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667899999999999887641 2222 35788899999999999999999998753 221 222 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 365 YNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 365 ~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999988754
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.49 Score=38.81 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=19.0
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 235 RYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKD 282 (536)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 282 (536)
..|+++.|.++.+.+. +...|..|.......|+++-|.+.|..
T Consensus 17 ~lg~l~~A~e~a~~l~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKLN-----DSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHHC-----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHhC-----CHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3444444444443331 334444444444444444444444443
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.80 E-value=0.2 Score=36.43 Aligned_cols=49 Identities=10% Similarity=-0.005 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 343 IPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 343 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
.++|..+|++..+.... ++.....+...+.+.|++++|+..|..+.+..
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45555555555443222 34444444555555555555555555555544
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.78 E-value=0.12 Score=41.30 Aligned_cols=88 Identities=18% Similarity=0.104 Sum_probs=65.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 417 WVLERMERNGCKMSTDTYNVILKLYVNWD---CEDKVRHTWEEMEKKGMGP--DQRSYTVMIHGLYDKGRLEDALSYFHE 491 (536)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~ 491 (536)
+.+....+.+ .++..+.-.+..++++.+ ++++++.++++..+.+ .| +...+-.|.-+|.+.|++++|.++++.
T Consensus 19 ~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 19 KKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3444444444 368888888899999988 6779999999998864 24 355666677789999999999999999
Q ss_pred HHHCCCCCcHHHHHHHH
Q 048749 492 MRLKGMVPEPRTGILVN 508 (536)
Q Consensus 492 m~~~g~~p~~~t~~~l~ 508 (536)
+++ +.|+..--..+.
T Consensus 97 lL~--ieP~n~QA~~Lk 111 (152)
T 1pc2_A 97 LLQ--TEPQNNQAKELE 111 (152)
T ss_dssp HHH--HCTTCHHHHHHH
T ss_pred HHh--cCCCCHHHHHHH
Confidence 998 578655433333
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.52 E-value=0.89 Score=40.61 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-CCh
Q 048749 273 VYEAKRFWKDIIKSKCEPD---SVTYATFVNALTKK-----GKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFK-KRI 343 (536)
Q Consensus 273 ~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~ 343 (536)
...|...+++.++. .|+ -..|..+...|.+. |+.++|.+.|++..+..-.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34666666666655 344 45677777777774 88888888888888843222356666677777774 888
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHH
Q 048749 344 PEALEVLREMKNRGCL--PNVTTYNS 367 (536)
Q Consensus 344 ~~A~~~~~~m~~~g~~--p~~~~~~~ 367 (536)
++|.+.+++....... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888888877655 55444443
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.49 E-value=0.087 Score=38.36 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHccCC---HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048749 153 SPGSNVFNAILDVLGRARR---FVELIQVFDEMP--DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFG 218 (536)
Q Consensus 153 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (536)
+.|+..+..+..++...++ .++|..+|++.. ++.++.++..+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566677777777654333 577777777766 66777777777777777788888888887777654
No 225
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.41 E-value=0.096 Score=38.24 Aligned_cols=55 Identities=16% Similarity=0.067 Sum_probs=28.4
Q ss_pred HHHhcCCHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048749 232 WLCRYKHVEVAETFFESEKNEFGYDIK-TMNIILNGWCVLGNVYEAKRFWKDIIKS 286 (536)
Q Consensus 232 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 286 (536)
.+.+.|++++|...++......+.+.. .+..+..+|...|++++|...|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344455555555555553222233444 5555555555566666666666555544
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.58 Score=38.34 Aligned_cols=98 Identities=9% Similarity=0.129 Sum_probs=47.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 198 YAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAK 277 (536)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 277 (536)
..+.|+++.|.++.+.+ .+...|..|.....+.|+++.|++.|..... +..+.-.|.-.|+.+.-.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHH
Confidence 34456666665555443 3455566666666666666666666555432 233333444455554444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 048749 278 RFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLF 315 (536)
Q Consensus 278 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 315 (536)
++-+.....| -++.....+...|+++++.++|
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 4333333322 1233333344455555555554
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.87 E-value=0.33 Score=36.04 Aligned_cols=73 Identities=12% Similarity=0.068 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH
Q 048749 429 MSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKG------MGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPR 502 (536)
Q Consensus 429 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 502 (536)
.+..-+-.|...+.+.|+++.|...++...+.- -.+....+..|..++.+.|++++|+.++++..+ +.|+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 345566688899999999999999999877531 123567889999999999999999999999987 567654
Q ss_pred H
Q 048749 503 T 503 (536)
Q Consensus 503 t 503 (536)
.
T Consensus 81 ~ 81 (104)
T 2v5f_A 81 R 81 (104)
T ss_dssp H
T ss_pred H
Confidence 4
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.53 E-value=0.22 Score=39.73 Aligned_cols=79 Identities=19% Similarity=0.124 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 311 ALRLFQAMWEKGRKPDVVTCNCIIDALCFKK---RIPEALEVLREMKNRGCLP--NVTTYNSLIKHLCKIKRMETVYEYL 385 (536)
Q Consensus 311 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~A~~~~ 385 (536)
+.+-|.+..+.|. ++..+...+..++++.+ +.++++.+|++..+.. .| ....+..+--+|.+.|++++|.+.+
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3344444433332 34444444444555554 3445555555554432 12 1233333444555556666666666
Q ss_pred HHHHhc
Q 048749 386 DEMEQK 391 (536)
Q Consensus 386 ~~m~~~ 391 (536)
+.+.+.
T Consensus 95 ~~lL~i 100 (152)
T 1pc2_A 95 RGLLQT 100 (152)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 655553
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.25 E-value=0.54 Score=34.78 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 328 VTCNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
.++..+..+|.+.|++++|...++++.+
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444444445555555555555554443
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.92 E-value=1.8 Score=34.20 Aligned_cols=100 Identities=10% Similarity=0.033 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhcCCH------hHHHHHHHHHHHcCCCCCHhh----HHHHHH---HHHhcCChHHHHHHHHHHHHCC
Q 048749 291 DSVTYATFVNALTKKGKL------GTALRLFQAMWEKGRKPDVVT----CNCIID---ALCFKKRIPEALEVLREMKNRG 357 (536)
Q Consensus 291 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~~----~~~li~---~~~~~g~~~~A~~~~~~m~~~g 357 (536)
|..+|-..+...-+.|+. ++..++|++.... ++|+... |-.+-- .+...++.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 444555555555555555 5666666666654 4444211 111100 1123478888888888886543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 358 CLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 358 ~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
-.- ...|-...+--.+.|++++|.+++......+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 333 5566655566667888888888888887766
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.00 E-value=1 Score=35.50 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=42.0
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048749 306 GKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN 361 (536)
Q Consensus 306 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 361 (536)
++.++|.++|+.+++.+-.. ..+|......-.+.|+++.|.+++......+.+|.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 78888888888887753333 66666666667788999999999998888776643
No 232
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.95 E-value=7 Score=37.76 Aligned_cols=95 Identities=18% Similarity=0.195 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHc--CCCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCCC--HHH
Q 048749 296 ATFVNALTKKGKLGTALRLFQAMWEK--GRKPD---VVTCNCIIDALCFKKRIPEALEVLREMK----NRGCLPN--VTT 364 (536)
Q Consensus 296 ~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~--~~~ 364 (536)
..|...+...|++.+|.+++..+... |.... ...+..-+..|...+++.+|..+++++. .....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44556666777777777777776543 22111 2345566677777788888877777653 2222222 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 365 YNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 365 ~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
|...+..+...+++.+|...|.++..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 56666667777888887777776644
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.70 E-value=0.73 Score=43.83 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=66.8
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCcHHHHHHH
Q 048749 433 TYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRL-----KGMVPEPRTGILV 507 (536)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 507 (536)
+...++..+...|+.++|...++.+.... +-+...|..+|.++.+.|+..+|++.|+++.+ .|+.|.+.+..+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45567788889999999999998887652 44778999999999999999999999988765 3999999997777
Q ss_pred HHHHHh
Q 048749 508 NDMNIK 513 (536)
Q Consensus 508 ~~~~~~ 513 (536)
..++..
T Consensus 252 ~~il~~ 257 (388)
T 2ff4_A 252 ERILRQ 257 (388)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 776544
No 234
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.47 E-value=6.3 Score=36.04 Aligned_cols=166 Identities=10% Similarity=0.045 Sum_probs=91.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHH
Q 048749 158 VFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGV----FDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 158 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
.|.++..-|.+.+++++|++++-.- ...+.+.|+...|-++ ++-..+.++++|......++..+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4556666788889999988876543 2345556665555544 35556778888888777777777
Q ss_pred HhcCCHHHH-HHHHHH-------hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048749 234 CRYKHVEVA-ETFFES-------EKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKK 305 (536)
Q Consensus 234 ~~~~~~~~a-~~~~~~-------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 305 (536)
.....-+-. ..+.+. ....-.-|......+...|.+.+++.+|...|- .|..+....+..++.-+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHT
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHh
Confidence 665532111 111111 111122466666777777777777777776662 23233335555555444443
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048749 306 GKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 306 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
+...++ |.+.-.++ --|.-.++...|..+|+...
T Consensus 181 ~~~~e~--------------dlfiaRaV-L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 181 DESHTA--------------PLYCARAV-LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp SCGGGH--------------HHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred cCCccH--------------HHHHHHHH-HHHHHhCCHHHHHHHHHHHH
Confidence 331111 22222222 23555667777766665554
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.43 E-value=1 Score=40.26 Aligned_cols=96 Identities=11% Similarity=0.109 Sum_probs=72.0
Q ss_pred HhHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH
Q 048749 308 LGTALRLFQAMWEKGRKPD---VVTCNCIIDALCFK-----KRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKI-KRM 378 (536)
Q Consensus 308 ~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~~~ 378 (536)
...|...+++..+ +.|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4567777777777 3555 56788899999994 99999999999998875433467777778888884 999
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHH
Q 048749 379 ETVYEYLDEMEQKNGSCLPNEITFNYL 405 (536)
Q Consensus 379 ~~A~~~~~~m~~~~~~~~p~~~~~~~l 405 (536)
+++.+.+++.....+...|+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 999999999998773222665444433
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.27 E-value=2 Score=32.83 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=50.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 048749 201 AHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEV---AETFFESEKNEFGY--DIKTMNIILNGWCVLGNVYE 275 (536)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~ 275 (536)
......+.+-|.+....| .++..+--.+.-++++...... +..+++.+...-.| .......|.-++.+.|++++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 334445555565555545 3666666566667777766555 66666665433222 33344555566677777777
Q ss_pred HHHHHHHHHHC
Q 048749 276 AKRFWKDIIKS 286 (536)
Q Consensus 276 A~~~~~~m~~~ 286 (536)
|.+.++.+.+.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777664
No 237
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.13 E-value=0.47 Score=34.32 Aligned_cols=63 Identities=11% Similarity=0.034 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048749 203 MVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN 265 (536)
Q Consensus 203 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 265 (536)
+.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+.++.+......+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 455666777777777888888888888888888888888888888876554444445555544
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.03 E-value=1.1 Score=42.57 Aligned_cols=69 Identities=9% Similarity=0.037 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-----cCCCCCHhh
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWE-----KGRKPDVVT 329 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 329 (536)
...++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+...+ .|+.|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4455666777788888887777776554 55677788888888888888888888777654 277776554
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.52 E-value=2.3 Score=32.57 Aligned_cols=82 Identities=16% Similarity=0.077 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 048749 309 GTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPE---ALEVLREMKNRGCLP--NVTTYNSLIKHLCKIKRMETVYE 383 (536)
Q Consensus 309 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~A~~ 383 (536)
..+.+-|......|. ++..+--.+..++.+..+... ++.+++.+.+.+ .| .......|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444434333 344444444555555554443 566666555442 11 12223334456666666666666
Q ss_pred HHHHHHhcC
Q 048749 384 YLDEMEQKN 392 (536)
Q Consensus 384 ~~~~m~~~~ 392 (536)
.++.+.+..
T Consensus 96 ~~~~lL~~e 104 (126)
T 1nzn_A 96 YVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 666666643
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.48 E-value=3.6 Score=42.52 Aligned_cols=55 Identities=16% Similarity=0.130 Sum_probs=41.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 334 IDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEME 389 (536)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 389 (536)
.+.+...|+++-|+++-++..... +-+..+|..|..+|...|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344556788888888888877652 2257888888888888888888888887764
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.71 E-value=15 Score=35.41 Aligned_cols=187 Identities=11% Similarity=0.104 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH----hcCC
Q 048749 134 FDWEAAYTFFKWVSR----EGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILLNRYA----AAHM 203 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~----~~g~ 203 (536)
++++.|++.+-.+.+ ..+......+...++..|.+.|+++...+.+..+. ..........+++.+. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 356666655544443 22345567778888888888888887755554433 1122223333333222 2222
Q ss_pred HHHH--HHHHHHHH--HcC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCCC---CHHHHHHHHHHHHh
Q 048749 204 VEEA--IGVFDRRK--EFG-ELD---DLSAFQNLLLWLCRYKHVEVAETFFESEKN---EFGY---DIKTMNIILNGWCV 269 (536)
Q Consensus 204 ~~~A--~~~~~~m~--~~g-~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~---~~~~~~~li~~~~~ 269 (536)
.+.. +.+.+... ..| +-. .......|...+-..|++.+|..++..+.. +... -...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 1111 11111110 001 001 111223455556666666666666665421 1111 12345555566666
Q ss_pred cCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 048749 270 LGNVYEAKRFWKDIIK----SKCEPDS--VTYATFVNALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~----~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (536)
.+++..|..++..+.. ....|+. .-+..++..+...+++.+|-+.|.+...
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 6666666666665431 1112221 2334445555556666666655555543
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.40 E-value=5.4 Score=41.19 Aligned_cols=55 Identities=13% Similarity=0.010 Sum_probs=46.8
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 437 ILKLYVNWDCEDKVRHTWEEMEKKGMGP-DQRSYTVMIHGLYDKGRLEDALSYFHEMR 493 (536)
Q Consensus 437 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 493 (536)
=.+.+...|+++.|+++-++.... .| +-.+|..|..+|...|+++.|+-.++.+-
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345567789999999999998876 34 57899999999999999999999998873
No 243
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.07 E-value=1.1 Score=34.32 Aligned_cols=62 Identities=11% Similarity=0.050 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048749 204 VEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN 265 (536)
Q Consensus 204 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 265 (536)
.-+..+-++.+...++.|++......+.+|.+.+++..|.++|+.++.+..+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34455666677777788888888888888888888888888888876555555445655544
No 244
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.27 E-value=23 Score=35.71 Aligned_cols=316 Identities=10% Similarity=0.019 Sum_probs=161.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh
Q 048749 159 FNAILDVLGRARRFVELIQVFDEMPDLVN--EKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDL-SAFQNLLLWLCR 235 (536)
Q Consensus 159 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~~~~~ 235 (536)
|....++ .+.|++..+..+...+...|- -..|..+.... ......+...++.+-. | .|-. ..-..-+..+.+
T Consensus 10 ~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~--~-~p~~~~Lr~~~l~~l~~ 84 (618)
T 1qsa_A 10 YAQIKQA-WDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANP--T-LPPARTLQSRFVNELAR 84 (618)
T ss_dssp HHHHHHH-HHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCT--T-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCC--C-ChhHHHHHHHHHHHHHh
Confidence 4444443 456888888888887762221 12333333222 2224555555554322 1 2222 233445566777
Q ss_pred cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH--HHH
Q 048749 236 YKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGT--ALR 313 (536)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~--a~~ 313 (536)
.+++.....++.. .+.+...-.....+....|+..+|....+.+-..| .........++..+.+.|.+.. ...
T Consensus 85 ~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~ 159 (618)
T 1qsa_A 85 REDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLE 159 (618)
T ss_dssp TTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHH
T ss_pred CCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHH
Confidence 7787776664432 24566666667777778888877877777766555 3334467778888887776543 333
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC---------CCCCCHHH---HHHHHHHHHhcCCHHHH
Q 048749 314 LFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNR---------GCLPNVTT---YNSLIKHLCKIKRMETV 381 (536)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~~~---~~~li~~~~~~~~~~~A 381 (536)
=++.+...| +...-..++... . .......+.+..+.+. ...++... +..-+.-+.+ .+.+.|
T Consensus 160 R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A 233 (618)
T 1qsa_A 160 RIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-QDAENA 233 (618)
T ss_dssp HHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHH
Confidence 334444443 222222222211 0 1111111112222221 01222221 1122222333 477888
Q ss_pred HHHHHHHHhcCCCCCCcHH--HHHHHHHhcCCCC---hHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 048749 382 YEYLDEMEQKNGSCLPNEI--TFNYLLKSLKKPE---EVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEE 456 (536)
Q Consensus 382 ~~~~~~m~~~~~~~~p~~~--~~~~ll~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (536)
...+........ ..+... ....+.......+ ++...+....... .+.....-.+....+.|+++.|...|+.
T Consensus 234 ~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~ 310 (618)
T 1qsa_A 234 RLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLAR 310 (618)
T ss_dssp HHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888865542 222221 1222222333222 4444555444332 3444444555556677999999999888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048749 457 MEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRL 494 (536)
Q Consensus 457 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 494 (536)
|...... ...-.--+..++...|+.++|..+|+.+..
T Consensus 311 l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 311 LPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp SCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8653211 222222344567778999999999988874
No 245
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=88.01 E-value=4.1e-05 Score=72.61 Aligned_cols=203 Identities=11% Similarity=0.067 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048749 155 GSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLC 234 (536)
Q Consensus 155 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 234 (536)
.+.+|..|..+..+.+++.+|++.|-+.. |...|..+|.+..+.|.+++-++.+.-.++..-.|... +.|+-+|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD---DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHH
Confidence 45577777777777777777776665554 33367777777777777777777776555543334333 36777777
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------------CCCCHHH
Q 048749 235 RYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSK--------------------CEPDSVT 294 (536)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------------~~~~~~~ 294 (536)
+.+++.+-++++. .|+..-...+.+-|...|.++.|.-+|..+..-. -.-++.|
T Consensus 128 k~~rL~elEefl~------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 128 KTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp TSCSSSTTTSTTS------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hhCcHHHHHHHHc------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 7776654333321 2444444455555556666665555553322100 0123445
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048749 295 YATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCK 374 (536)
Q Consensus 295 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 374 (536)
|-.+-.+|...+++..|.-.--.++-. +| -...++..|-..|.+++-+.+++.-... -.....+|+-|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHh
Confidence 555555555555554443222222111 11 1122344455556666655555554321 11345555555555544
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.99 E-value=7.2 Score=30.04 Aligned_cols=82 Identities=10% Similarity=-0.003 Sum_probs=58.5
Q ss_pred CCCCCHHHHHHHHHHHHccCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH
Q 048749 426 GCKMSTDTYNVILKLYVNWDC---EDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPR 502 (536)
Q Consensus 426 ~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 502 (536)
+-.|+..+--.+..++.+..+ ..+++.+++++.+.+..-....+-.|.-|+.+.|++++|.++.+.+++ +.|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 445666666667777777665 457888998888764212355666777899999999999999999997 577765
Q ss_pred HHHHHHH
Q 048749 503 TGILVND 509 (536)
Q Consensus 503 t~~~l~~ 509 (536)
-...|..
T Consensus 113 QA~~Lk~ 119 (134)
T 3o48_A 113 QVGALKS 119 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444433
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.53 E-value=6 Score=28.69 Aligned_cols=47 Identities=9% Similarity=0.210 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 345 EALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
+..+-++.+....+.|++....+.+.+|.+.+++.-|.++|+-++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444444444455555555555555555555555555555555444
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.44 E-value=8.8 Score=42.27 Aligned_cols=190 Identities=12% Similarity=-0.029 Sum_probs=104.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCC-----------------
Q 048749 193 ILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGY----------------- 255 (536)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------------- 255 (536)
.++..+...+..+-+.++.... +.+...--.+..++...|++++|.++|.+...++..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3445555566665555443221 223333234455566667777777777664322211
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 048749 256 ------DIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDS----VTYATFVNALTKKGKLGTALRLFQAMWEKGRKP 325 (536)
Q Consensus 256 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 325 (536)
-..=|.-++..+-+.|.++.+.++-+..++...+-+. ..|..+.+++...|++++|...+-.+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 1123566777788888888888777666553212121 25777888888888888888888777665443
Q ss_pred CHhhHHHHHHHHHhcC------------ChHHHHHHHHHHHH-C-CCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 048749 326 DVVTCNCIIDALCFKK------------RIPEALEVLREMKN-R-GCLPNVTTYNSLIKHLCKIKRMETVYE-YLDEME 389 (536)
Q Consensus 326 ~~~~~~~li~~~~~~g------------~~~~A~~~~~~m~~-~-g~~p~~~~~~~li~~~~~~~~~~~A~~-~~~~m~ 389 (536)
......+|...|..| ..++..+++..--+ . .+...+.-|..|-.-+...|++.+|-. +|+.+.
T Consensus 971 -~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 345556666555544 44555666654321 1 111112234444455566777776544 455543
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.26 E-value=16 Score=40.31 Aligned_cols=142 Identities=13% Similarity=0.058 Sum_probs=70.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----------------
Q 048749 229 LLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPD----------------- 291 (536)
Q Consensus 229 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------- 291 (536)
++..+.+.+..+.+.++..... .+......+..+|...|++++|.+.|++... |+..+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhcc----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccc
Confidence 4445556666666655544332 2444445566677778888888888865421 11110
Q ss_pred ------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048749 292 ------SVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDV----VTCNCIIDALCFKKRIPEALEVLREMKNRGCLPN 361 (536)
Q Consensus 292 ------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 361 (536)
..-|..++..+.+.+.++.+.++-....+..-.-+. ..|..+...+...|++++|...+-.+..... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence 112344445555555555555554444432111111 1345555555555555555555555544322 2
Q ss_pred HHHHHHHHHHHHhcCC
Q 048749 362 VTTYNSLIKHLCKIKR 377 (536)
Q Consensus 362 ~~~~~~li~~~~~~~~ 377 (536)
......||...|..|.
T Consensus 971 ~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCCC
Confidence 3344444444444443
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.92 E-value=14 Score=28.91 Aligned_cols=80 Identities=10% Similarity=-0.008 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHHHHHHccCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH
Q 048749 426 GCKMSTDTYNVILKLYVNWDC---EDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPR 502 (536)
Q Consensus 426 ~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 502 (536)
+-.|+..+--.+..++.+..+ ..+++.+++++.+.+..-.....-.|.-++.+.|++++|.++.+.+++ +.|+..
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 445677776677777777665 457888888888753222344555666799999999999999999998 578665
Q ss_pred HHHHH
Q 048749 503 TGILV 507 (536)
Q Consensus 503 t~~~l 507 (536)
-...|
T Consensus 112 QA~~L 116 (144)
T 1y8m_A 112 QVGAL 116 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.20 E-value=10 Score=29.12 Aligned_cols=47 Identities=9% Similarity=0.210 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048749 345 EALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 391 (536)
+..+-++.+....+.|++....+.+.+|.+.+++.-|..+|+-.+.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44445555555556666666666666666666666666666666554
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.71 E-value=33 Score=31.06 Aligned_cols=166 Identities=12% Similarity=0.011 Sum_probs=95.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHH
Q 048749 158 VFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGV----FDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 158 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|-++ .+-..+.+++++......++..+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45566677778888888888765432 344556776655554 45556668888888887777776
Q ss_pred HhcCCH--------HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048749 234 CRYKHV--------EVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKK 305 (536)
Q Consensus 234 ~~~~~~--------~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 305 (536)
.....- ..|..+-......-.-+......+...|.+.|++.+|...|- .|..-|...+..++--+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHh
Confidence 554321 112222111111122477788888888888888888887663 12111345555555544444
Q ss_pred ---CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048749 306 ---GKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 306 ---g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
|...++ |...-.+ +-.|.-.|+...|..+|+...
T Consensus 179 ~~~~~~~e~--------------dlf~~Ra-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 179 VDDIEDSTV--------------AEFFSRL-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TTCCCHHHH--------------HHHHHHH-HHHHHHTTBHHHHHHHHHHHH
T ss_pred cCCCCcchH--------------HHHHHHH-HHHHHHhcCHHHHHHHHHHHH
Confidence 433332 1111122 223556778888888877664
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.20 E-value=20 Score=27.62 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=8.9
Q ss_pred HHHHhcCCHhHHHHHHHHHHH
Q 048749 300 NALTKKGKLGTALRLFQAMWE 320 (536)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~ 320 (536)
-++.+.|++++|.+..+.+.+
T Consensus 86 vg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 86 IGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444444444433
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=78.38 E-value=45 Score=31.34 Aligned_cols=161 Identities=9% Similarity=0.040 Sum_probs=87.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhCC----CC---CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHH---
Q 048749 158 VFNAILDVLGRARRFVELIQVFDEMP----DL---VNEKTYGILLNRYAAA-HMVEEAIGVFDRRKEFGELDDLSAF--- 226 (536)
Q Consensus 158 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~---~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~--- 226 (536)
+...+...|.+.|+.++..+++.... .. ........++..+... +..+.-.++..+..+..- ....+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45678889999999999999998877 11 1233455666666554 334444444444433211 011111
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHhcCCC---C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHH
Q 048749 227 ---QNLLLWLCRYKHVEVAETFFESEKNEF---G---YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKS--KCEPDSVTY 295 (536)
Q Consensus 227 ---~~ll~~~~~~~~~~~a~~~~~~~~~~~---~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~ 295 (536)
..++..|...|++.+|..++..+...+ . --..++-.-+..|...+++.++...+...... .+.+++..-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 246677777777777777766642211 1 11233555566666777777777777665432 122222221
Q ss_pred H--HHH--HHHH-hcCCHhHHHHHHHHHH
Q 048749 296 A--TFV--NALT-KKGKLGTALRLFQAMW 319 (536)
Q Consensus 296 ~--~li--~~~~-~~g~~~~a~~~~~~m~ 319 (536)
. -.. -.+. ..+++..|...|-+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1 111 1233 5667777766665543
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.16 E-value=8.8 Score=33.71 Aligned_cols=71 Identities=23% Similarity=0.206 Sum_probs=48.0
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 048749 336 ALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLK 407 (536)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~ 407 (536)
...+.|++++|++....-.+.... |...=..+++.+|-.|++++|.+-++...+..+...|...+|..+|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~ 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH
Confidence 455778888888887777666432 66666777888888888888888888877765333344444444443
No 256
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.90 E-value=6.5 Score=34.76 Aligned_cols=13 Identities=8% Similarity=0.115 Sum_probs=6.0
Q ss_pred HHHHHHHHHCCCC
Q 048749 416 PWVLERMERNGCK 428 (536)
Q Consensus 416 ~~~~~~~~~~~~~ 428 (536)
.++.+.+.+.|..
T Consensus 199 ~~i~~~Ll~~g~~ 211 (285)
T 1wdy_A 199 EAITHLLLDHGAD 211 (285)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 4444444444443
No 257
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=75.86 E-value=0.029 Score=53.62 Aligned_cols=180 Identities=13% Similarity=0.124 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDR 213 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 213 (536)
+.++.-++++..+.+. .-++.+=+.|+-+|++.+++.+..+. ...++..-...+..-|...|.++.|.-+|..
T Consensus 97 ~~~edLv~yL~MaRk~---~ke~~IDteLi~ayAk~~rL~elEef----l~~~N~A~iq~VGDrcf~e~lYeAAKilys~ 169 (624)
T 3lvg_A 97 GNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEF----INGPNNAHIQQVGDRCYDEKMYDAAKLLYNN 169 (624)
T ss_dssp SCCTTHHHHHHTTSTT---CCSTTTTHHHHHHHHTSCSSSTTTST----TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGG
T ss_pred CCHHHHHHHHHHHHHH---hcccccHHHHHHHHHhhCcHHHHHHH----HcCCCcccHHHHHHHHHHccCHHHHHHHHHh
Confidence 4566666655555443 23444555666666666665443222 2234444455556666666666666555544
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048749 214 RKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSV 293 (536)
Q Consensus 214 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 293 (536)
+.... .|...+.+.|++..|.+.-++ ..++.+|--+-.+|...+.+.-|...--.++- .+|
T Consensus 170 isN~a---------kLAstLV~L~~yq~AVdaArK-----Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had-- 230 (624)
T 3lvg_A 170 VSNFG---------RLASTLVHLGEYQAAVDGARK-----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD-- 230 (624)
T ss_dssp SCCCT---------TTSSSSSSCSGGGSSTTTTTT-----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--
T ss_pred CccHH---------HHHHHHHHHHHHHHHHHHHHh-----cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--
Confidence 32211 122222223332222211110 12455666666666666666655444333332 111
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 048749 294 TYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFK 340 (536)
Q Consensus 294 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 340 (536)
-...++.-|-..|.+++-+.+++.-... -.....+|+-|.-.|+|-
T Consensus 231 eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 231 ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 1223445556666666666666554422 123445555555555543
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.16 E-value=25 Score=33.68 Aligned_cols=94 Identities=11% Similarity=-0.042 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc---CCCCCHh----h
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWKDIIKSK--CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEK---GRKPDVV----T 329 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~----~ 329 (536)
+...+...|.+.|++++|.+.+.++...- ..--...+-.+++.+...+++..+...+.+.... +-.|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45556666777777777777777776532 2222455666677777777777777777766542 2222211 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 048749 330 CNCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
|..+ .+...+++..|.+.|-+..
T Consensus 213 ~~gl--~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 213 YYGI--HCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHH--GGGGTSCHHHHHHHHHHHH
T ss_pred HHHH--HHHHhChHHHHHHHHHHHh
Confidence 1111 2334677777777776654
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.60 E-value=21 Score=25.71 Aligned_cols=87 Identities=18% Similarity=0.118 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 202 HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWK 281 (536)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 281 (536)
...++|.-+-+.+...|. ...+--+-+..+.+.|++++|..+.+... .||...|.+|-.. +.|-.+++...+.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce~--rlGl~s~le~rL~ 92 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP---WPALEPWFALCEW--HLGLGAALDRRLA 92 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC---CGGGHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 346666666666665442 21121122344567788888776654433 6777777766553 6677777777777
Q ss_pred HHHHCCCCCCHHHHH
Q 048749 282 DIIKSKCEPDSVTYA 296 (536)
Q Consensus 282 ~m~~~g~~~~~~~~~ 296 (536)
.+...| .|....|.
T Consensus 93 ~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 93 GLGGSS-DPALADFA 106 (115)
T ss_dssp HHHTCS-SHHHHHHH
T ss_pred HHHhCC-CHHHHHHH
Confidence 776666 45444443
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.35 E-value=22 Score=25.70 Aligned_cols=87 Identities=17% Similarity=0.028 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048749 202 HMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWK 281 (536)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 281 (536)
...++|.-+-+.+...|. ...+--+-+..+.+.|++++|..+.+... -||...|.+|-.. +.|-.+++...+.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce~--rlGl~s~le~rL~ 93 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA---YPDLEPWLALCEY--RLGLGSALESRLN 93 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC---CGGGHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 346666666666655442 11111122344567777777777665433 5777777666553 5677777777666
Q ss_pred HHHHCCCCCCHHHHH
Q 048749 282 DIIKSKCEPDSVTYA 296 (536)
Q Consensus 282 ~m~~~g~~~~~~~~~ 296 (536)
.+...| .|....|.
T Consensus 94 ~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 94 RLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHTTCC-CHHHHHHH
T ss_pred HHHhCC-CHHHHHHH
Confidence 666655 44444443
No 261
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=74.25 E-value=6 Score=32.88 Aligned_cols=77 Identities=12% Similarity=0.097 Sum_probs=33.2
Q ss_pred HccCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHH
Q 048749 167 GRARRFVELIQVFDEMP---DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSA--FQNLLLWLCRYKHVEV 241 (536)
Q Consensus 167 ~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~ 241 (536)
+..|+.+....+++.-. ...+..-++.|.. .+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+.
T Consensus 13 ~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 87 (201)
T 3hra_A 13 ANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTEI 87 (201)
T ss_dssp HHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 45566666666665543 1122222223322 23445443 3333344454433211 0122333445566666
Q ss_pred HHHHHHH
Q 048749 242 AETFFES 248 (536)
Q Consensus 242 a~~~~~~ 248 (536)
+..+++.
T Consensus 88 ~~~Ll~~ 94 (201)
T 3hra_A 88 LAYMLKH 94 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6655544
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.94 E-value=22 Score=25.62 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDR 213 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 213 (536)
...++|..+-+|+...+. ...+--.-+..+...|++++|..+.+... .||...|-+|-. .+.|..+++..-+.+
T Consensus 20 H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNP-WPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-CGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 478899999999988761 33333344466778999999999999887 688888887755 477888888888888
Q ss_pred HHHcCCCCCHHHHH
Q 048749 214 RKEFGELDDLSAFQ 227 (536)
Q Consensus 214 m~~~g~~~~~~~~~ 227 (536)
+-..| .|....|.
T Consensus 94 la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 94 LGGSS-DPALADFA 106 (115)
T ss_dssp HHTCS-SHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 88776 45444443
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.28 E-value=23 Score=25.56 Aligned_cols=87 Identities=13% Similarity=0.106 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDR 213 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 213 (536)
...++|..+-+|+...+. ...+--.-+..+...|++++|..+.+... .||...|-+|-. .+.|..+++..-+.+
T Consensus 21 H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLA-YPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-CGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 478899999999988761 33333344456778999999999999987 688888888765 467888888888878
Q ss_pred HHHcCCCCCHHHHH
Q 048749 214 RKEFGELDDLSAFQ 227 (536)
Q Consensus 214 m~~~g~~~~~~~~~ 227 (536)
+-..| .|....|.
T Consensus 95 la~sg-~p~~q~Fa 107 (116)
T 2p58_C 95 LARSQ-DPRIQTFV 107 (116)
T ss_dssp HTTCC-CHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 77766 45444443
No 264
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.10 E-value=11 Score=33.28 Aligned_cols=21 Identities=10% Similarity=-0.040 Sum_probs=11.4
Q ss_pred HHHHHHccCCHHHHHHHHHhC
Q 048749 162 ILDVLGRARRFVELIQVFDEM 182 (536)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~~ 182 (536)
.+...++.|+++....+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g 28 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGG 28 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcC
Confidence 344445566666666665543
No 265
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=72.27 E-value=41 Score=27.94 Aligned_cols=17 Identities=24% Similarity=-0.060 Sum_probs=7.1
Q ss_pred CHhhHHHHHHHHHhcCC
Q 048749 326 DVVTCNCIIDALCFKKR 342 (536)
Q Consensus 326 ~~~~~~~li~~~~~~g~ 342 (536)
+..+-...+.++.+.+.
T Consensus 156 ~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 156 DGWVRQSAADALGEIGG 172 (211)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33344444444444443
No 266
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=71.97 E-value=30 Score=33.04 Aligned_cols=126 Identities=12% Similarity=0.070 Sum_probs=95.4
Q ss_pred CCCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC--CCCCHHHHHHHH
Q 048749 118 LTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP--DLVNEKTYGILL 195 (536)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li 195 (536)
+.++.+.++..+.....+++.|+++-.+. +++--...|..-.+.+...|++++|.++--..+ ...+..|.+.+-
T Consensus 327 v~v~e~~ivpyi~~~l~n~~lA~~lA~R~----~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk 402 (494)
T 1bpo_A 327 VCVEEENIIPYITNVLQNPDLALRMAVRN----NLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQ 402 (494)
T ss_dssp EEECTTTHHHHHHHTTCCHHHHHHHHHHT----TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHT
T ss_pred EEEccccchhhhhhccCCHHHHHHHHHhc----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHh
Confidence 45677777777776556899887765543 366667778888899999999999999988887 467788887777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 196 NRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFES 248 (536)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 248 (536)
..=...|+..--+..|..+.+.| ..+..--.-+++.....|+.+..+.++.+
T Consensus 403 ~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 403 SVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp TSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 66666677777888888888887 56665555667777778888877777766
No 267
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=70.36 E-value=19 Score=28.90 Aligned_cols=120 Identities=8% Similarity=0.060 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-------HHHHHHHHHHHhcCCHhHHHHHHHHHHHc--CCCCCHhh
Q 048749 260 MNIILNGWCVLGNVYEAKRFWKDIIKSK-CEPDS-------VTYATFVNALTKKGKLGTALRLFQAMWEK--GRKPDVVT 329 (536)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~ 329 (536)
+..-+..+...|.++.|+-+.+.+.... ..|+. .++..+.+++...|++..|...|++..+. .+.-+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3344555666777777777666644321 12331 24455566677777777777777775442 11111111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048749 330 CNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKN 392 (536)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 392 (536)
+..+ ........ ......+...-..+-.+|.+.+++++|+.+++.+..+.
T Consensus 103 ~~~~----~~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 103 RPST----GNSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred cccc----cccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 1111 00000000 00112233444456778888999999999888765443
No 268
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=70.10 E-value=69 Score=29.61 Aligned_cols=85 Identities=12% Similarity=0.156 Sum_probs=58.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 048749 433 TYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGR--LEDALSYFHEMRLKGMVPEPRTGILVNDM 510 (536)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~l~~~ 510 (536)
....++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+....++..+...|+.+......-+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3567888899999999999999998642221 23345555556665443 45688899999998887766665555555
Q ss_pred HHhhhhhh
Q 048749 511 NIKLKERG 518 (536)
Q Consensus 511 ~~~~~~~~ 518 (536)
+....+..
T Consensus 298 l~~ldDl~ 305 (358)
T 3eiq_C 298 YNEIPDIN 305 (358)
T ss_dssp HHHHHHHH
T ss_pred HHhccHhh
Confidence 55555443
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.98 E-value=17 Score=34.89 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=29.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 048749 402 FNYLLKSLKKPEEVPWVLERMER--NGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEME 458 (536)
Q Consensus 402 ~~~ll~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 458 (536)
..-+...+|+.+.|.+++.++.. .+..--...+-.+++.+...+++..+...+++..
T Consensus 137 la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 137 LGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp HHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33334445556666666655554 2222223455555566666666666666655544
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.41 E-value=11 Score=33.20 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=20.7
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 235 RYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDII 284 (536)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 284 (536)
+.|+++++.+....-.+.-+.|...-..++..+|-.|+++.|.+-++...
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33444444444333222223344444444444444444444444444433
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=66.17 E-value=53 Score=27.35 Aligned_cols=55 Identities=20% Similarity=0.215 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 048749 341 KRIPEALEVLREMKNRGCLP-NVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLP 397 (536)
Q Consensus 341 g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p 397 (536)
+...++.++|..|...|+-- -...|......+...|++.+|.++|..-.+.+ ..|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~--A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN--CRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--Ccc
Confidence 33556666777666555443 24455555666666677777777777666665 444
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=64.58 E-value=94 Score=29.16 Aligned_cols=288 Identities=11% Similarity=0.053 Sum_probs=148.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCC-----CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH----
Q 048749 226 FQNLLLWLCRYKHVEVAETFFESEKNEFG-----YDIKTMNIILNGWCVL-GNVYEAKRFWKDIIKSKCEPDSVTY---- 295 (536)
Q Consensus 226 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~---- 295 (536)
...|...|.+.|+.++..+++.....-+. -.......+++.+... +..+.-.++..+.++.. .-+..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 34566667777777777666666432211 1233355566666552 33343344444433211 0111223
Q ss_pred --HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-----HhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHH
Q 048749 296 --ATFVNALTKKGKLGTALRLFQAMWEKGRKPD-----VVTCNCIIDALCFKKRIPEALEVLREMKNR--GCLPNVTTYN 366 (536)
Q Consensus 296 --~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~ 366 (536)
.-++..|...|++.+|.+++..+.+.--..| ..+|..-+..|...+++.++...+...... .+.+++....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 2578889999999999999998887521212 234666677888999999999999877532 2223333322
Q ss_pred HH----HHHHH-hcCCHHHHHHHHHHHHhcCCCC-CC---cHHHHHHHHHhcC-CCChHHHHHH-HHHHCCCCCCHHHHH
Q 048749 367 SL----IKHLC-KIKRMETVYEYLDEMEQKNGSC-LP---NEITFNYLLKSLK-KPEEVPWVLE-RMERNGCKMSTDTYN 435 (536)
Q Consensus 367 ~l----i~~~~-~~~~~~~A~~~~~~m~~~~~~~-~p---~~~~~~~ll~~~~-~~~~a~~~~~-~~~~~~~~~~~~~~~ 435 (536)
.+ ...+. ..+++..|...|-+..+..... .| +...|..+..... ...+...++. .....-..|....+.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~ 260 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHH
Confidence 11 12344 6789999988887764332101 12 1223433333332 2233333322 111111245555555
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-cHHHHHHHHHH
Q 048749 436 VILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHEMRLKG----MVP-EPRTGILVNDM 510 (536)
Q Consensus 436 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~t~~~l~~~ 510 (536)
.++.+|. .+++.+...+++.... .+..|...... ...+++++..++ +.| ...++..+...
T Consensus 261 ~L~~a~~-~~dl~~f~~iL~~~~~-~l~~D~~l~~h-------------~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~ 325 (394)
T 3txn_A 261 SVAEASH-KRSLADFQAALKEYKK-ELAEDVIVQAH-------------LGTLYDTMLEQNLCRIIEPYSRVQVAHVAES 325 (394)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHSTT-TTTTSHHHHHH-------------HHHHHHHHHHHHHHHHHTTCSEEEHHHHHHH
T ss_pred HHHHHHH-hCCHHHHHHHHHHHHH-HHhcChHHHHH-------------HHHHHHHHHHHHHHHHhHhhceeeHHHHHHH
Confidence 5666544 4677766666665433 23445542111 112222222221 123 23345555555
Q ss_pred HHhhhhhhhhhHHHHHhhhcc
Q 048749 511 NIKLKERGEQGKKVIKLTSLG 531 (536)
Q Consensus 511 ~~~~~~~~~a~~~~~~~~~~g 531 (536)
+.- ..+++++.+.+|..-|
T Consensus 326 l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 326 IQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HTC--CHHHHHHHHHHHHHTT
T ss_pred HCc--CHHHHHHHHHHHHHCC
Confidence 433 4557888888876554
No 273
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=64.37 E-value=35 Score=27.39 Aligned_cols=59 Identities=3% Similarity=-0.129 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCC----CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048749 157 NVFNAILDVLGRARRFVELIQVFDEMP----DLVNE-------KTYGILLNRYAAAHMVEEAIGVFDRRK 215 (536)
Q Consensus 157 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (536)
.++-.-++.+...|.++.|+-+.+.+. ..++. .++..+..++...|++.+|...|++.+
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344555666677777777776666644 22221 244555566667777777777776654
No 274
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=62.85 E-value=65 Score=26.67 Aligned_cols=170 Identities=12% Similarity=-0.013 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048749 154 PGSNVFNAILDVLGRARRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWL 233 (536)
Q Consensus 154 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 233 (536)
++..+-...+..+++.|..+....+.+.+. .++...-...+.++...++. ++...+..+.. .++...-...+.++
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALK-DEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVAL 105 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHc-CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 355666666666666666433333444333 35666666666777766653 23344434433 46666666677777
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 048749 234 CRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALR 313 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 313 (536)
.+.+..+....+.+.+. .++..+-...+.++.+.|+.+ +...+..+.. .++..+-...+.++.+.+. .++..
T Consensus 106 ~~~~~~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~ 177 (211)
T 3ltm_A 106 GQIGDERAVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRA 177 (211)
T ss_dssp HHHCCGGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHH
T ss_pred HHhCcHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHH
Confidence 77776544444443343 356666666777777776643 4444444443 4566666666777777766 34444
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHh
Q 048749 314 LFQAMWEKGRKPDVVTCNCIIDALCF 339 (536)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~li~~~~~ 339 (536)
.+..+.+. ++..+-...+.++.+
T Consensus 178 ~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 178 AMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred HHHHHHhC---CCHHHHHHHHHHHHh
Confidence 45454442 244444444444433
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=62.79 E-value=55 Score=25.85 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 048749 448 DKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRT 503 (536)
Q Consensus 448 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 503 (536)
+.+.++|..|...|+.-. ...|......+...|++++|.++|+.-++.+-.|-..-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 138 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFL 138 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 347777888877766543 45566677777778888888888888888777775544
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.41 E-value=67 Score=26.73 Aligned_cols=60 Identities=17% Similarity=0.092 Sum_probs=38.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 048749 444 WDCEDKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRT 503 (536)
Q Consensus 444 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 503 (536)
+++...+.++|..|...|+.-. ..-|......+...|++++|.++|+.-++.+-.|-..-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL 152 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRL 152 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 3445577777777777665433 44566666666777777777777777777776665443
No 277
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=62.37 E-value=36 Score=30.90 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHCCCCCCHHHH--HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHH
Q 048749 414 EVPWVLERMERNGCKMSTDTY--NVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQR---SYTVMIHGLYDKGRLEDALSY 488 (536)
Q Consensus 414 ~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~ 488 (536)
...++.+.+.+.|..++.... .+.+...++.|+.+ +++.+.+.|..++.. -.+.|.. .+..|+.+ +
T Consensus 225 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~n~~d~~g~t~L~~-A~~~~~~~----~ 295 (351)
T 3utm_A 225 KRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND----VMEVLHKHGAKMNALDSLGQTALHR-AALAGHLQ----T 295 (351)
T ss_dssp THHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHH-HHHHTCHH----H
T ss_pred cHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHH-HHHcCcHH----H
Confidence 345566666766655432111 12233344566654 444455566554422 2233333 34456654 4
Q ss_pred HHHHHHCCCCCcH
Q 048749 489 FHEMRLKGMVPEP 501 (536)
Q Consensus 489 ~~~m~~~g~~p~~ 501 (536)
++.+++.|..|+.
T Consensus 296 v~~Ll~~gad~~~ 308 (351)
T 3utm_A 296 CRLLLSYGSDPSI 308 (351)
T ss_dssp HHHHHHTTCCTTC
T ss_pred HHHHHHcCCCCCC
Confidence 4445556655543
No 278
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=59.87 E-value=60 Score=25.31 Aligned_cols=20 Identities=5% Similarity=-0.139 Sum_probs=9.1
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 048749 336 ALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~ 355 (536)
++.+.|++++|.++.+.+.+
T Consensus 86 g~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 86 GCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444444443
No 279
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=59.83 E-value=56 Score=24.94 Aligned_cols=85 Identities=12% Similarity=0.156 Sum_probs=57.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 048749 433 TYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGR--LEDALSYFHEMRLKGMVPEPRTGILVNDM 510 (536)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~l~~~ 510 (536)
....++.-|...|+.++|...++++..-.+. ...+...+..++-+.++ .+.+..++..+...|+.+......-+...
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v 87 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 87 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 3566888899999999999999998632111 23344555566666543 46788899999988877666665555555
Q ss_pred HHhhhhhh
Q 048749 511 NIKLKERG 518 (536)
Q Consensus 511 ~~~~~~~~ 518 (536)
+....+..
T Consensus 88 ~~~l~Dl~ 95 (129)
T 2nsz_A 88 YNEIPDIN 95 (129)
T ss_dssp HHHHHHHH
T ss_pred HhhChHhh
Confidence 55554443
No 280
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=59.72 E-value=34 Score=31.68 Aligned_cols=64 Identities=6% Similarity=-0.074 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhh--hhhhhhHHHHHhhhccC
Q 048749 468 SYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLK--ERGEQGKKVIKLTSLGL 532 (536)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~--~~~~a~~~~~~~~~~g~ 532 (536)
..+.++.=|...|+.++|.+.++++..-.+.+ ......+..++-+.+ ..+...+++..+.+.|+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 35678888999999999999999996322221 222444444444432 33456666666655443
No 281
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=59.20 E-value=56 Score=25.80 Aligned_cols=84 Identities=12% Similarity=0.157 Sum_probs=55.2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 048749 433 TYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGR--LEDALSYFHEMRLKGMVPEPRTGILVNDM 510 (536)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~l~~~ 510 (536)
....++.-|...|+.++|...++++..-.+. ...+...+..++-+.++ .+.+..++..+...|+.+......-+...
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~v 89 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 89 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 4567888899999999999999988632111 23344555556665433 45688889999888877666554555555
Q ss_pred HHhhhhh
Q 048749 511 NIKLKER 517 (536)
Q Consensus 511 ~~~~~~~ 517 (536)
+....+.
T Consensus 90 l~~ldDl 96 (152)
T 2ion_A 90 YNEIPDI 96 (152)
T ss_dssp HHHHHHH
T ss_pred HHhChHh
Confidence 4444444
No 282
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=58.56 E-value=1.2e+02 Score=28.58 Aligned_cols=156 Identities=11% Similarity=0.053 Sum_probs=76.7
Q ss_pred hHHHHHHHHHhcCC---hHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHH
Q 048749 329 TCNCIIDALCFKKR---IPEALEVLREMKNRG----CLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEIT 401 (536)
Q Consensus 329 ~~~~li~~~~~~g~---~~~A~~~~~~m~~~g----~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~ 401 (536)
.-..++...|..|+ .++|.+.|+...+.+ ++||.... +-+.+ .+..++-..+++..... .+..-
T Consensus 199 lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~---Vy~~~-~~~~~~~~~l~~~y~~s-----~~~~e 269 (419)
T 3rjo_A 199 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA---VFAVG-AQSTEGWDFLYSKYQFS-----LSSTE 269 (419)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHH---HHHHH-TTSHHHHHHHHHHHHHC-----CCHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCccee---EEeee-eCCHHHHHHHHHHHhcC-----CCHHH
Confidence 44567778888887 457888898876542 55554321 11111 22322233444444443 23344
Q ss_pred HHHHHHhcCCCCh---HHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CChhHHHHHHH----HHHHCCCCCCHHHHHHHH
Q 048749 402 FNYLLKSLKKPEE---VPWVLERMERNGCKMSTDTYNVILKLYVNW-DCEDKVRHTWE----EMEKKGMGPDQRSYTVMI 473 (536)
Q Consensus 402 ~~~ll~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~----~m~~~g~~p~~~~~~~li 473 (536)
-..++.+++...+ ..++++......+......... +.+.+.. -..+.|.+.+. .+.+. +.++...+..+|
T Consensus 270 k~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~~-~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~i 347 (419)
T 3rjo_A 270 KSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQI-LTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMV 347 (419)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHHH-HHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHHH-HHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHHH
Confidence 5566666654443 3466666665443122333332 3333332 22344554443 33332 223445677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 048749 474 HGLYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 474 ~~~~~~g~~~~A~~~~~~m~~~ 495 (536)
.+....-.-++-++-++.+.+.
T Consensus 348 ~~~~~~~~t~~~l~e~~~Ff~~ 369 (419)
T 3rjo_A 348 MGTTNQFSTRTRLEEVKGFFSS 369 (419)
T ss_dssp HHTTTTCCSHHHHHHHHHHHHT
T ss_pred HHHhhcCCCHHHHHHHHHHHHh
Confidence 7666554444444445555544
No 283
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=58.08 E-value=37 Score=30.84 Aligned_cols=21 Identities=10% Similarity=0.003 Sum_probs=12.1
Q ss_pred HHHHHHHccCCHHHHHHHHHh
Q 048749 161 AILDVLGRARRFVELIQVFDE 181 (536)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~ 181 (536)
..+..-++.|+++-+..+++.
T Consensus 27 t~L~~Av~~g~~~~V~~LL~~ 47 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLEG 47 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHC
Confidence 334444566666666666665
No 284
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=56.66 E-value=1.1e+02 Score=27.51 Aligned_cols=25 Identities=24% Similarity=0.021 Sum_probs=14.3
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHH
Q 048749 326 DVVTCNCIIDALCFKKRIPEALEVL 350 (536)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~ 350 (536)
|+.....+...|.+.|++.+|..-|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4455555556666666666665544
No 285
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=56.01 E-value=1.1e+02 Score=31.10 Aligned_cols=42 Identities=26% Similarity=0.288 Sum_probs=25.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHh
Q 048749 158 VFNAILDVLGRARRFVELIQVFDEMPDL--VNEKTYGILLNRYAA 200 (536)
Q Consensus 158 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~ 200 (536)
+| .+|--|.|+|.+++|.++.++.... .-...+-..+..|+.
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 44 3566778999999999988877611 112356666666663
No 286
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=55.17 E-value=79 Score=27.14 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048749 256 DIKTMNIILNGWCVLGNVYEAKRFWKD 282 (536)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~ 282 (536)
+.......+..+.+.|+.++|.++|-+
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 333344444455555555555555543
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=54.51 E-value=82 Score=25.24 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHH
Q 048749 448 DKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTGIL 506 (536)
Q Consensus 448 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 506 (536)
+.+.++|..|...|+.-. ...|......+-..|++++|.++|+.-++.+-.|-......
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~ 136 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQ 136 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 457888999998877544 45677777778889999999999999999988887665333
No 288
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.48 E-value=78 Score=24.98 Aligned_cols=71 Identities=10% Similarity=0.007 Sum_probs=51.8
Q ss_pred CCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC
Q 048749 395 CLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMS-TDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPD 465 (536)
Q Consensus 395 ~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 465 (536)
..-|..-...-|.-.....+...+|..|...|+-.. +..|......+-..|++.+|.++|+.-.+.+-.|-
T Consensus 64 YknD~RyLklWl~ya~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp GTTCHHHHHHHHHHHTTBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 334554444444433445668899999998776544 56778888888899999999999999988877773
No 289
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=54.14 E-value=53 Score=26.32 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 048749 413 EEVPWVLERMERNGCKMS-TDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQ 466 (536)
Q Consensus 413 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 466 (536)
++...+|..|...|+-.. +..|......+-..|++.+|.++|+.-.+.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 567788888888776543 567788888888999999999999999998877754
No 290
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=52.45 E-value=1.4e+02 Score=27.25 Aligned_cols=167 Identities=11% Similarity=0.047 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHh-cCCCCCCHHHHHHHH
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFF----ESE-KNEFGYDIKTMNIIL 264 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~----~~~-~~~~~~~~~~~~~li 264 (536)
+|.++..-|.+.+++++|++++..--. .+.+.|+...|-++- +-. +.+.++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 455666778889999999988644211 122334333322221 111 233455555555566
Q ss_pred HHHHhcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 048749 265 NGWCVLGNVY-EAKRFWKDII----KSK--CEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDAL 337 (536)
Q Consensus 265 ~~~~~~g~~~-~A~~~~~~m~----~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 337 (536)
..+.....-+ .=..+.+.++ +.| ..-|......+...|.+.+++.+|...|- .|..+....|..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 5555443211 1122222222 222 23456666777788888888888877662 23443445665555444
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 338 CFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 338 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
.+.+...++ +...-.+++ -|...++...|..++....+
T Consensus 178 ~~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESHTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGGGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 444332211 222223333 34556777777776665543
No 291
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=51.56 E-value=73 Score=27.02 Aligned_cols=57 Identities=12% Similarity=0.139 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHH
Q 048749 448 DKVRHTWEEMEKKGMGPD-QRSYTVMIHGLYDKGRLEDALSYFHEMRLKGMVPEPRTG 504 (536)
Q Consensus 448 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 504 (536)
+.+.++|..|...|+.-. ...|......+...|++++|.++|+.-++.+-.|-..-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~ 188 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQ 188 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 467778888887776543 455667777777788888888888888887777755543
No 292
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=47.73 E-value=60 Score=29.41 Aligned_cols=86 Identities=10% Similarity=0.057 Sum_probs=39.0
Q ss_pred CCCChHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHH
Q 048749 410 KKPEEVPWVLERMERNGCKMSTDT--YNVILKLYVNWDCEDKVRHTWEEMEKKGMGPD---QRSYTVMIHGLYDKGRLED 484 (536)
Q Consensus 410 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~ 484 (536)
+.......+.+.+.+.|..++... -.+.+...+..|..+.+..+++ ..|..++ ..-++.|..+ ++.|+.+
T Consensus 213 ~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~---~~~~~vn~~d~~G~TpL~~A-~~~g~~~- 287 (337)
T 4g8k_A 213 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE---QEHIEINDTDSDGKTALLLA-VELKLKK- 287 (337)
T ss_dssp SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT---STTCCTTCBCTTSCBHHHHH-HHTTCHH-
T ss_pred cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH---hcCCcccCcCCCCCCHHHHH-HHcCCHH-
Confidence 334445556666666665544211 1122333445566555444332 1233222 1122233333 3556643
Q ss_pred HHHHHHHHHHCCCCCcHHH
Q 048749 485 ALSYFHEMRLKGMVPEPRT 503 (536)
Q Consensus 485 A~~~~~~m~~~g~~p~~~t 503 (536)
+.+.+++.|..+|..+
T Consensus 288 ---iv~~Ll~~GAd~n~~~ 303 (337)
T 4g8k_A 288 ---IAELLCKRGASTDCGD 303 (337)
T ss_dssp ---HHHHHHTTSCSSTTCC
T ss_pred ---HHHHHHHCCCCCCCCC
Confidence 4445566777776655
No 293
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=47.41 E-value=1.1e+02 Score=24.82 Aligned_cols=18 Identities=17% Similarity=-0.033 Sum_probs=7.5
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 048749 221 DDLSAFQNLLLWLCRYKH 238 (536)
Q Consensus 221 ~~~~~~~~ll~~~~~~~~ 238 (536)
++...-...+.++.+.+.
T Consensus 88 ~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 344443444444444443
No 294
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=47.06 E-value=53 Score=27.54 Aligned_cols=20 Identities=15% Similarity=0.022 Sum_probs=10.8
Q ss_pred HHHHHccCCHHHHHHHHHhC
Q 048749 163 LDVLGRARRFVELIQVFDEM 182 (536)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~~ 182 (536)
+...++.|+++....+++.-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 33444556666666665543
No 295
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.91 E-value=1.4e+02 Score=25.62 Aligned_cols=89 Identities=7% Similarity=0.053 Sum_probs=46.4
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHc--CCCC----CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048749 299 VNALTKKGKLGTALRLFQAMWEK--GRKP----DVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHL 372 (536)
Q Consensus 299 i~~~~~~g~~~~a~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 372 (536)
++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+++.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 45566666777777666655542 2221 111222223322222222333444444422 34555666667778
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 048749 373 CKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 373 ~~~~~~~~A~~~~~~m~~ 390 (536)
.+.|+.++|.++|-+...
T Consensus 102 ~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHHH
Confidence 888888888888766543
No 296
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=46.68 E-value=2.9e+02 Score=29.30 Aligned_cols=27 Identities=15% Similarity=0.022 Sum_probs=14.4
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHH
Q 048749 433 TYNVILKLYVNWDCEDKVRHTWEEMEK 459 (536)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 459 (536)
--..++.+++...+.....++++....
T Consensus 752 ek~~ll~aL~c~~~~~~l~~~L~~~~~ 778 (897)
T 2xdt_A 752 EKSQIEFALCRTQNKEKLQWLLDESFK 778 (897)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 334455555555555555555555543
No 297
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=45.73 E-value=52 Score=21.06 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=35.0
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCC
Q 048749 107 GEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFFKWVSREGDYSPG 155 (536)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (536)
++....|..+=-.++...+..+|..++++.+.|...+-.+.... +.|+
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~-~~~~ 57 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP-SGPS 57 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCC-CSCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCC-CCCC
Confidence 34444555554567889999999999999999998888876544 4443
No 298
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=45.70 E-value=90 Score=29.92 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhc-
Q 048749 413 EEVPWVLERMER--------NGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGM----GPDQRSYTVMIHGLYDK- 479 (536)
Q Consensus 413 ~~a~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~- 479 (536)
++...+++...+ .++..+......++.. ..|+..++..+++.+..... .....+...+-.++.+.
T Consensus 168 edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~ 245 (447)
T 3pvs_A 168 EDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERS 245 (447)
T ss_dssp HHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhh
Q ss_pred -----------------------CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhhhhhh-----hhhHHHHHhhhcc
Q 048749 480 -----------------------GRLEDALSYFHEMRLKGMVPEPRTGILVNDMNIKLKERG-----EQGKKVIKLTSLG 531 (536)
Q Consensus 480 -----------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~-----~a~~~~~~~~~~g 531 (536)
++.+.|+.++.+|++.|..|......++..+....|..+ -|...+.-...+|
T Consensus 246 ~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 246 ARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp CC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Q ss_pred C
Q 048749 532 L 532 (536)
Q Consensus 532 ~ 532 (536)
+
T Consensus 326 ~ 326 (447)
T 3pvs_A 326 P 326 (447)
T ss_dssp H
T ss_pred C
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.37 E-value=1.2e+02 Score=25.74 Aligned_cols=68 Identities=6% Similarity=0.048 Sum_probs=51.0
Q ss_pred CcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 048749 397 PNEITFNYLLKSLKKPEEVPWVLERMERNGCKMS-TDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGP 464 (536)
Q Consensus 397 p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 464 (536)
-|..-...-|.-....++...+|..|...|+-.. ...|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 115 nD~RyLklWl~Ya~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 115 DDVRYLRIWMQYVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp TCHHHHHHHHHHHTTCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3443333333333335788999999999887544 6778888888999999999999999998887777
No 300
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=44.78 E-value=30 Score=29.22 Aligned_cols=15 Identities=0% Similarity=0.020 Sum_probs=7.0
Q ss_pred HccCCHHHHHHHHHh
Q 048749 167 GRARRFVELIQVFDE 181 (536)
Q Consensus 167 ~~~g~~~~A~~~~~~ 181 (536)
++.|+++....+++.
T Consensus 17 ~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 17 TQYGIYERCRELVEA 31 (240)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHc
Confidence 344555544444443
No 301
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=43.90 E-value=1.4e+02 Score=24.92 Aligned_cols=38 Identities=8% Similarity=0.138 Sum_probs=21.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048749 269 VLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKG 306 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 306 (536)
+-.+.+.|+-++-.|++.|..|.-..-..++-+.-.-|
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 35667777777777777765555444444444444433
No 302
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=43.24 E-value=78 Score=26.47 Aligned_cols=35 Identities=17% Similarity=0.066 Sum_probs=17.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048749 444 WDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYD 478 (536)
Q Consensus 444 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 478 (536)
..+.|.|+-.+-+|.+.|-.|....=..++-+.-.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsED 82 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACED 82 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 45566666666666665544444333344444433
No 303
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=43.02 E-value=49 Score=29.22 Aligned_cols=18 Identities=0% Similarity=-0.226 Sum_probs=8.5
Q ss_pred HHHHccCCHHHHHHHHHh
Q 048749 164 DVLGRARRFVELIQVFDE 181 (536)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~ 181 (536)
...+..|+.+-+..+++.
T Consensus 67 ~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 67 HQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHTTSSSCHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHC
Confidence 333445555555444443
No 304
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=42.91 E-value=70 Score=26.43 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=18.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048749 444 WDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYD 478 (536)
Q Consensus 444 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 478 (536)
..|.|.|+-.+-+|.+.|-.|....=..++-+.-.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsED 54 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASED 54 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 45566666666666666554444433444444433
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=42.18 E-value=2.4e+02 Score=27.05 Aligned_cols=42 Identities=14% Similarity=-0.071 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 170 RRFVELIQVFDEMPDLVNEKTYGILLNRYAAAHMVEEAIGVF 211 (536)
Q Consensus 170 g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 211 (536)
.+.+-|.++-.+...+.-...|..-...+...|++++|-++-
T Consensus 343 ~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~a 384 (494)
T 1bpo_A 343 QNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVA 384 (494)
T ss_dssp CCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455555555555543333333444444555555555554443
No 306
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=41.68 E-value=32 Score=29.11 Aligned_cols=22 Identities=9% Similarity=-0.029 Sum_probs=14.0
Q ss_pred HHHHHHccCCHHHHHHHHHhCC
Q 048749 162 ILDVLGRARRFVELIQVFDEMP 183 (536)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~~~ 183 (536)
.+...++.|+++-+..+++.-.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHcCC
Confidence 4455566777777776766544
No 307
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.04 E-value=78 Score=30.88 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRR 214 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m 214 (536)
.+|.+++.|...+.++.|..+..+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 4444555555555555555544443
No 308
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=40.72 E-value=77 Score=26.66 Aligned_cols=15 Identities=13% Similarity=0.423 Sum_probs=6.3
Q ss_pred HhcCCHHHHHHHHHH
Q 048749 234 CRYKHVEVAETFFES 248 (536)
Q Consensus 234 ~~~~~~~~a~~~~~~ 248 (536)
+..|+.+.+..+++.
T Consensus 87 ~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 87 CEHRSPTCLRALLDS 101 (241)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHc
Confidence 344444444444433
No 309
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=39.84 E-value=3e+02 Score=29.22 Aligned_cols=155 Identities=9% Similarity=0.006 Sum_probs=72.5
Q ss_pred HHHHHHHccCC---HHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048749 161 AILDVLGRARR---FVELIQVFDEMP-----DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLW 232 (536)
Q Consensus 161 ~li~~~~~~g~---~~~A~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 232 (536)
.++...|+.|. .++|.+.|+... ...+......+...-.+.|..++-..+++..... .+..--..++.+
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~a 767 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLRSA 767 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHHHH
Confidence 34444444443 456666666532 1111223333444444566666555566666553 344444567777
Q ss_pred HHhcCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcC
Q 048749 233 LCRYKHVEVAETFFESEKNE--FGYDIKTMNIILNGWCVLG-NVYEAKRFWKDIIK---SKCEPDSVTYATFVNALTKKG 306 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g 306 (536)
++...+.+...++++..... +++. ... .++.+..... ..+.|.+.+.+=-+ .........+..++......-
T Consensus 768 L~~~~d~~~l~~~L~~~l~~~~ir~q-d~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~ 845 (909)
T 4fke_A 768 LACSNEVWLLNRYLGYTLNPDLIRKQ-DAT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRF 845 (909)
T ss_dssp HTTCCCHHHHHHHHHHTTCTTTSCGG-GHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTC
T ss_pred hCCCCCHHHHHHHHHHHhCCCCCchh-hHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhc
Confidence 77777777777777764322 2221 112 2222222221 12334443332111 112223345666777666554
Q ss_pred CHhHHHHHHHHHHH
Q 048749 307 KLGTALRLFQAMWE 320 (536)
Q Consensus 307 ~~~~a~~~~~~m~~ 320 (536)
.-++-++-++...+
T Consensus 846 ~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 846 SSEFELQQLEQFKK 859 (909)
T ss_dssp CSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHh
Confidence 44444444444443
No 310
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=39.67 E-value=3.1e+02 Score=27.57 Aligned_cols=48 Identities=8% Similarity=0.295 Sum_probs=23.1
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048749 439 KLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYF 489 (536)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 489 (536)
..+...|....|...|..+.+. .+......+.......|..+.++...
T Consensus 389 ~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 389 RELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 3344556666666666655543 12222233333344556555555444
No 311
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=38.91 E-value=48 Score=29.27 Aligned_cols=13 Identities=0% Similarity=0.281 Sum_probs=5.5
Q ss_pred HhcCCHHHHHHHH
Q 048749 234 CRYKHVEVAETFF 246 (536)
Q Consensus 234 ~~~~~~~~a~~~~ 246 (536)
+..|+.+.+..++
T Consensus 70 ~~~g~~~~v~~Ll 82 (285)
T 3kea_A 70 ATLEDTKIVKILL 82 (285)
T ss_dssp TTSSSCHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3444444444443
No 312
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=38.59 E-value=2.2e+02 Score=25.62 Aligned_cols=74 Identities=14% Similarity=0.055 Sum_probs=35.3
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHH
Q 048749 107 GEIEKALNQCELTLTDDLIVNVINRYR-FDWEAAYTFFKWVSREGDYSPG-----SNVFNAILDVLGRARRFVELIQVFD 180 (536)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~ 180 (536)
..+.++++..| .+...++.+|.... .+.....+.|..+-... ..-+ ...|..++-++...---.+|..+.+
T Consensus 19 ~~L~~A~kG~G--tde~~lieIL~~rs~~q~~~I~~~Y~~~yg~~-L~~dl~se~sG~f~~ll~~l~~~~~~~dA~~L~~ 95 (315)
T 1dm5_A 19 ETLRKAMKGIG--TDEKSITHILATRSNAQRQQIKTDYTTLFGKH-LEDELKSELSGNYEAAALALLRKPDEFLAEQLHA 95 (315)
T ss_dssp HHHHHHHSSSS--CCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSC-HHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCC--CCHHHHHHHHhcCCHHHHHHHHHHHHHHHCCC-HHHHHHhhcCccHHHHHHHHccChhHHHHHHHHH
Confidence 44555664433 57888888887642 23333444444443221 1100 1134444545544333345555555
Q ss_pred hCC
Q 048749 181 EMP 183 (536)
Q Consensus 181 ~~~ 183 (536)
.|.
T Consensus 96 A~k 98 (315)
T 1dm5_A 96 AMK 98 (315)
T ss_dssp HHH
T ss_pred Hhh
Confidence 554
No 313
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.54 E-value=2.2e+02 Score=25.56 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=54.3
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Q 048749 434 YNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGR--LEDALSYFHEMRLKGMVPEPRTGILVNDMN 511 (536)
Q Consensus 434 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~ 511 (536)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+....++..+.+.|+.+......-+...+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 456788888899999999999988632111 12344455555555443 456778899998888776665555555555
Q ss_pred Hhhhhh
Q 048749 512 IKLKER 517 (536)
Q Consensus 512 ~~~~~~ 517 (536)
....+.
T Consensus 248 ~~l~Dl 253 (307)
T 2zu6_B 248 NEIPDI 253 (307)
T ss_dssp HHHHHH
T ss_pred HhccHh
Confidence 544444
No 314
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=37.67 E-value=96 Score=26.02 Aligned_cols=88 Identities=9% Similarity=-0.034 Sum_probs=45.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 048749 195 LNRYAAAHMVEEAIGVFDRRKEFGELDDLSA--FQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGN 272 (536)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 272 (536)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++.-..-...+..-++ .+...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT-AAHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC-HHHHHHHcCC
Confidence 3344566777777777776666654443221 113344556677777766666542111111211122 2334456777
Q ss_pred HHHHHHHHHHH
Q 048749 273 VYEAKRFWKDI 283 (536)
Q Consensus 273 ~~~A~~~~~~m 283 (536)
.+-+..+++..
T Consensus 92 ~~~~~~Ll~~~ 102 (241)
T 1k1a_A 92 PTCLRALLDSA 102 (241)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHcC
Confidence 76666555443
No 315
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=37.66 E-value=1.5e+02 Score=23.54 Aligned_cols=62 Identities=11% Similarity=0.015 Sum_probs=46.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHHC
Q 048749 433 TYNVILKLYVNWDCEDKVRHTWEEMEKKGMGP--DQRSYTVMIH-G-----LYDKGRLEDALSYFHEMRLK 495 (536)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~~~ 495 (536)
.|..-+..|-. |++-+|-++|++.-...-.+ +...|..||. . ..+.|+.+.|..++.+....
T Consensus 35 ~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34444444444 99999999999998765455 5677888888 2 23679999999999998763
No 316
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=37.62 E-value=1.5e+02 Score=24.91 Aligned_cols=21 Identities=5% Similarity=-0.023 Sum_probs=10.3
Q ss_pred HHHHccCChhHHHHHHHHHHH
Q 048749 439 KLYVNWDCEDKVRHTWEEMEK 459 (536)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~ 459 (536)
-.|.+.|.+++|.+++++...
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHhcchHHHHHHHHHHhc
Confidence 334455555555555554443
No 317
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.25 E-value=1.5e+02 Score=23.30 Aligned_cols=21 Identities=19% Similarity=0.037 Sum_probs=8.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHh
Q 048749 229 LLLWLCRYKHVEVAETFFESE 249 (536)
Q Consensus 229 ll~~~~~~~~~~~a~~~~~~~ 249 (536)
++.-|...|+.++|...++++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 333344444444444444443
No 318
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=36.63 E-value=1.2e+02 Score=21.79 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048749 449 KVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKG 480 (536)
Q Consensus 449 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 480 (536)
.|.++.++....|+.|+..+...++..|...+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 35555556666666666666666666555544
No 319
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.30 E-value=1.6e+02 Score=22.35 Aligned_cols=20 Identities=15% Similarity=-0.027 Sum_probs=8.2
Q ss_pred HHHHHhcCCHHHHHHHHHHh
Q 048749 230 LLWLCRYKHVEVAETFFESE 249 (536)
Q Consensus 230 l~~~~~~~~~~~a~~~~~~~ 249 (536)
+.-|...|+.++|...++++
T Consensus 14 l~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 14 LKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHh
Confidence 33333444444444444443
No 320
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=32.73 E-value=2.7e+02 Score=24.80 Aligned_cols=14 Identities=7% Similarity=0.019 Sum_probs=6.1
Q ss_pred HccCCHHHHHHHHH
Q 048749 167 GRARRFVELIQVFD 180 (536)
Q Consensus 167 ~~~g~~~~A~~~~~ 180 (536)
+..|+.+-+..+++
T Consensus 66 ~~~g~~~~v~~Ll~ 79 (351)
T 3utm_A 66 AGYNRVRIVQLLLQ 79 (351)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34444444444444
No 321
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=32.55 E-value=1.5e+02 Score=22.98 Aligned_cols=16 Identities=0% Similarity=-0.321 Sum_probs=7.1
Q ss_pred HHhcCChHHHHHHHHH
Q 048749 337 LCFKKRIPEALEVLRE 352 (536)
Q Consensus 337 ~~~~g~~~~A~~~~~~ 352 (536)
.++.|+.+-+.-+++.
T Consensus 142 A~~~~~~~~~~~L~~~ 157 (167)
T 3v31_A 142 AVALGYRSVQQVIESH 157 (167)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHH
Confidence 3444554444444443
No 322
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=32.35 E-value=40 Score=28.54 Aligned_cols=17 Identities=0% Similarity=0.005 Sum_probs=9.0
Q ss_pred HhcCCHHHHHHHHHHHH
Q 048749 373 CKIKRMETVYEYLDEME 389 (536)
Q Consensus 373 ~~~~~~~~A~~~~~~m~ 389 (536)
+..|+.+.+.++.+.+.
T Consensus 218 ~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQ 234 (237)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34455555555555554
No 323
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=31.29 E-value=1e+02 Score=20.76 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=26.7
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHhccCCHHHHHHHH
Q 048749 107 GEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFF 143 (536)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~ 143 (536)
++....|..+| ++...+..+|..+.++.+.|.+++
T Consensus 30 ee~I~~L~eMG--F~r~~a~~AL~~~~~nve~Ave~L 64 (73)
T 1vg5_A 30 EEQIQKLVAMG--FDRTQVEVALAAADDDLTVAVEIL 64 (73)
T ss_dssp HHHHHHHHTTT--CCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 44555666677 688899999999888999997554
No 324
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=30.78 E-value=13 Score=32.44 Aligned_cols=53 Identities=6% Similarity=-0.140 Sum_probs=30.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHH--hcCCHHHHHHHHHH
Q 048749 196 NRYAAAHMVEEAIGVFDRRKEFGELDDLSA-------FQNLLLWLC--RYKHVEVAETFFES 248 (536)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~ 248 (536)
...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+.+..+++.
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 344566777777777777766665555332 223333332 56777777766665
No 325
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.70 E-value=2.3e+02 Score=23.47 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=9.6
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 048749 270 LGNVYEAKRFWKDIIKSK 287 (536)
Q Consensus 270 ~g~~~~A~~~~~~m~~~g 287 (536)
-.+.+.|+-++-.|++.|
T Consensus 27 GSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG 44 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 345555555555555555
No 326
>2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein; 1.10A {Giardia intestinalis} PDB: 2iic_A
Probab=30.60 E-value=3e+02 Score=24.69 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=15.4
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHhc
Q 048749 107 GEIEKALNQCELTLTDDLIVNVINRY 132 (536)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~l~~~ 132 (536)
..+.++++ |. +...++.+|...
T Consensus 11 ~~L~kA~k--G~--de~~lI~IL~~r 32 (310)
T 2ii2_A 11 PEVKAILE--AK--NEEELVTFTSRW 32 (310)
T ss_dssp HHHHHHHH--TT--CHHHHHHHHTTC
T ss_pred HHHHHHHc--CC--CHHHHHHHHhCC
Confidence 55666666 32 888888888764
No 327
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.72 E-value=1e+02 Score=23.91 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=45.2
Q ss_pred hHHHHHHhhcCCCCCHH--HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCH
Q 048749 107 GEIEKALNQCELTLTDD--LIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRF 172 (536)
Q Consensus 107 ~~~~~~l~~~~~~~~~~--~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 172 (536)
.++.+.|++.|..+++. .++.+|.... +-.|.++++.+.+.+ ...+..|-..-++.+.+.|-+
T Consensus 4 ~~~~~~L~~~g~r~T~qR~~Il~~l~~~~--h~ta~ei~~~l~~~~-~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 4 TDWKSDLRQRGYRLTPQRQLVLEAVDTLE--HATPDDILGEVRKTA-SGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp TTHHHHHHTTTCCCCHHHHHHHHHHHHHS--SBCHHHHHHHHHTTC-TTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHhcC--CCCHHHHHHHHHhhC-CCCCHhHHHHHHHHHHHCCcE
Confidence 45677888888888875 5566776543 567889999987764 455777766677777777654
No 328
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=29.65 E-value=5.5e+02 Score=27.49 Aligned_cols=160 Identities=13% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHhcCCC--CCCcHHHHHHHHHhcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048749 366 NSLIKHLCKIKR---METVYEYLDEMEQKNGS--CLPNEITFNYLLKSLKKPEEVPWVLERMERNGCKMSTDTYNVILKL 440 (536)
Q Consensus 366 ~~li~~~~~~~~---~~~A~~~~~~m~~~~~~--~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 440 (536)
..++...|..|. .++|.+.|++....+.. +.||..........-. .++...+++...+.. +..--..++.+
T Consensus 752 ~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~Vyc~~~~~-~~~~~~l~~~y~~s~---~~~ek~~ll~a 827 (967)
T 3se6_A 752 SALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVYSVGAQT-TAGWNYLLEQYELSM---SSAEQNKILYA 827 (967)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHTTS-HHHHHHHHHHHHHCS---CHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccCChhhhhHhHhhhhcc-HHHHHHHHHHHhccC---CHHHHHHHHHH
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH---HHHCCCCCcHHHHHHHHHHHHhhhhh
Q 048749 441 YVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRLEDALSYFHE---MRLKGMVPEPRTGILVNDMNIKLKER 517 (536)
Q Consensus 441 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~g~~p~~~t~~~l~~~~~~~~~~ 517 (536)
++...+.+...++++................+........-.+.|++++.+ -+.+.+.++...+..++......-..
T Consensus 828 L~ct~d~~ll~~~L~~~l~~~~i~~qd~~~~~~~v~~n~~g~~~~w~f~~~nw~~i~~~~~~~~~~~~~~i~~~~~~~~t 907 (967)
T 3se6_A 828 LSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSS 907 (967)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSSSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHTTTTTCCS
T ss_pred hcCCCCHHHHHHHHHHHhCcCcCcHhHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhccCC
Q ss_pred hhhhHHHHHhhh
Q 048749 518 GEQGKKVIKLTS 529 (536)
Q Consensus 518 ~~a~~~~~~~~~ 529 (536)
++..+.++.+.+
T Consensus 908 ~~~l~~~~~f~~ 919 (967)
T 3se6_A 908 KDKLQEVKLFFE 919 (967)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 329
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=29.25 E-value=5.5e+02 Score=27.36 Aligned_cols=349 Identities=9% Similarity=-0.033 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCC-----CCCHHHHHHHHHHH
Q 048749 124 LIVNVINRYRFDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPD-----LVNEKTYGILLNRY 198 (536)
Q Consensus 124 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~li~~~ 198 (536)
++.++++..-++-..-....+|+-+. .+....-...--.....|+.++++.+++.... .+....=..+.-+.
T Consensus 345 f~Naf~naG~~~D~~l~~~~~Wl~k~---~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGl 421 (963)
T 4ady_A 345 VANGFMHAGTTDNSFIKANLPWLGKA---QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGL 421 (963)
T ss_dssp HHHHHHTTTTCCCHHHHHCHHHHHHC---CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcchhhhcchhhhhcc---chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHhcCCCCCCHHHHHHHHHHHH--
Q 048749 199 AAAHMVEEAIGVFDRRKEFGE-------LDDLSAFQNLLLWLCRYKHVE-VAETFFESEKNEFGYDIKTMNIILNGWC-- 268 (536)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~-------~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~li~~~~-- 268 (536)
+..|..+++++++.......- .+....-.++.-+++-.|.-+ ++.+.+..+...-.+......++.-+..
T Consensus 422 i~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~v 501 (963)
T 4ady_A 422 IYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCML 501 (963)
T ss_dssp HTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred hcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhc
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhhHH---HHHHHHHhcCChHH
Q 048749 269 VLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTALRLFQAMWEKGRKPDVVTCN---CIIDALCFKKRIPE 345 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~---~li~~~~~~g~~~~ 345 (536)
-.|+-+-...++..+.+.. .-++.-...+.-++...|+.+.+..+.+.+.. ......-|. ++.-+|+..|+...
T Consensus 502 GTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~--~~dp~vRygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLA--SDESLLRYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTSCCHHH
T ss_pred ccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCCCHHH
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhcCCCChHHHHHHHHHHC
Q 048749 346 ALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQKNGSCLPNEITFNYLLKSLKKPEEVPWVLERMERN 425 (536)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~ 425 (536)
..+++..+.+.... ++.-...+.-++...|+.+.+.+++..+.+.+
T Consensus 579 Iq~LL~~~~~d~~d-~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~--------------------------------- 624 (963)
T 4ady_A 579 VKRLLHVAVSDSND-DVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH--------------------------------- 624 (963)
T ss_dssp HHHHHHHHHHCSCH-HHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS---------------------------------
T ss_pred HHHHHHHhccCCcH-HHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC---------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHccCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHC
Q 048749 426 GCKMSTDTYNVILKLYVNWDCE-DKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKG---------RLEDALSYFHEMRLK 495 (536)
Q Consensus 426 ~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~~ 495 (536)
.|....-..+.-+....|+. .+|.+++..+... +|..+=..-+.++..-| ++...++.+.....+
T Consensus 625 --d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 625 --NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITN 699 (963)
T ss_dssp --CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhc
Q ss_pred CC-CCcHHHHHHHHHHHHhhhhh
Q 048749 496 GM-VPEPRTGILVNDMNIKLKER 517 (536)
Q Consensus 496 g~-~p~~~t~~~l~~~~~~~~~~ 517 (536)
.- .|+......+.......|..
T Consensus 700 k~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 700 KHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp SSSCHHHHHHHHHHHHHHTTGGG
T ss_pred ccccHHHHHHHHHHHHHHhcCCC
No 330
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=27.86 E-value=2.7e+02 Score=23.38 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=15.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcC
Q 048749 229 LLLWLCRYKHVEVAETFFESEKN 251 (536)
Q Consensus 229 ll~~~~~~~~~~~a~~~~~~~~~ 251 (536)
.+..|.+.|.+++|.+++++.-.
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHhcchHHHHHHHHHHhc
Confidence 34557777777777777777543
No 331
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=27.36 E-value=2.1e+02 Score=28.19 Aligned_cols=72 Identities=7% Similarity=0.007 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 048749 238 HVEVAETFFESEKNEFG-YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGKLGTA 311 (536)
Q Consensus 238 ~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 311 (536)
+.+......+.+...++ .+..-..-++..|.+.|-.+.|.++++.+-..-+. +...+ .-+..|+++|+++.+
T Consensus 496 ~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 496 TRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp CHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred chhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 33444444444333333 23344556677777777777777777776543322 22233 444556777766654
No 332
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=27.12 E-value=97 Score=17.97 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=23.6
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhccCCHHHHHHHH
Q 048749 108 EIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFF 143 (536)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~ 143 (536)
+....|..+| ++......+|..+.++.+.|..++
T Consensus 6 ~~i~~L~~MG--F~~~~a~~AL~~~~~n~e~A~~~L 39 (43)
T 2g3q_A 6 LAVEELSGMG--FTEEEAHNALEKCNWDLEAATNFL 39 (43)
T ss_dssp HHHHHHHTTT--SCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHhCcCHHHHHHHH
Confidence 3445555667 467778888888888888886543
No 333
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=26.72 E-value=2.4e+02 Score=22.41 Aligned_cols=53 Identities=4% Similarity=-0.043 Sum_probs=38.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHhc
Q 048749 339 FKKRIPEALEVLREMKNRGCLP--NVTTYNSLIK-H-----LCKIKRMETVYEYLDEMEQK 391 (536)
Q Consensus 339 ~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~-~-----~~~~~~~~~A~~~~~~m~~~ 391 (536)
..|++-+|-++|+..-.....+ ....|..||+ . ..+.|+...|..++.+....
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3488999999999887654455 5566777777 2 23578899999988887653
No 334
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=26.70 E-value=1.4e+02 Score=19.56 Aligned_cols=46 Identities=22% Similarity=0.125 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048749 190 TYGILLNRYAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRY 236 (536)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 236 (536)
.++.++..++...-.+.++..+++..+.| ..+..+|..-++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 46777788888888888888888888888 66777776666665543
No 335
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.48 E-value=1.4e+02 Score=24.92 Aligned_cols=84 Identities=10% Similarity=0.014 Sum_probs=41.7
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCCHhh--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---------CHHHHHHHH
Q 048749 301 ALTKKGKLGTALRLFQAMWEKGRKPDVVT--CNCIIDALCFKKRIPEALEVLREMKNRGCLP---------NVTTYNSLI 369 (536)
Q Consensus 301 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---------~~~~~~~li 369 (536)
..+..|+.+- ++.+.+.|..++... -.+.+...+..|+.+-+..+++.+.+.|..+ |..-.+. +
T Consensus 127 ~A~~~~~~~~----v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l 201 (232)
T 2rfa_A 127 FAACVGSEEI----VRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-F 201 (232)
T ss_dssp HHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-H
T ss_pred HHHHcCCHHH----HHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-H
Confidence 3344555543 333444555443221 1123444556777777777777777666433 2222222 3
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 048749 370 KHLCKIKRMETVYEYLDEME 389 (536)
Q Consensus 370 ~~~~~~~~~~~A~~~~~~m~ 389 (536)
...++.|+.+-+..+++.-.
T Consensus 202 ~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 202 KLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcCc
Confidence 33445566666555555443
No 336
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.19 E-value=1.1e+02 Score=18.45 Aligned_cols=35 Identities=6% Similarity=0.054 Sum_probs=26.0
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHhccCCHHHHHHHH
Q 048749 107 GEIEKALNQCELTLTDDLIVNVINRYRFDWEAAYTFF 143 (536)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~ 143 (536)
.+....|..+| ++......+|+.+.++.+.|.+++
T Consensus 9 ~~~i~~L~~MG--F~~~~a~~AL~~~~~n~e~A~e~L 43 (49)
T 1ify_A 9 ETMLTEIMSMG--YERERVVAALRASYNNPHRAVEYL 43 (49)
T ss_dssp HHHHHHHHHTT--CCHHHHHHHHHTTTSCSHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 33445566677 488888999999888999887654
No 337
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.02 E-value=1.5e+02 Score=27.04 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 048749 330 CNCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4556666777777777777776664
No 338
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=25.54 E-value=4.2e+02 Score=24.82 Aligned_cols=28 Identities=18% Similarity=0.070 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 048749 135 DWEAAYTFFKWVSREGDYSPGSNVFNAILDVL 166 (536)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 166 (536)
++..++++...+... .+..+|..++..+
T Consensus 125 ~~~~~l~l~~yL~~E----~~y~~w~~~~~~l 152 (419)
T 3rjo_A 125 SIEKALDLSLYLKHE----TEIMPVFQGLNEL 152 (419)
T ss_dssp CHHHHHHHHGGGGGC----CSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccc----chHHHHHHHHHHH
Confidence 555555555555432 3455555555444
No 339
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.38 E-value=1.6e+02 Score=19.83 Aligned_cols=32 Identities=6% Similarity=0.059 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048749 448 DKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDK 479 (536)
Q Consensus 448 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 479 (536)
-.+.++++.+.+.+...+..|..-.+..+...
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 34444444444443333333333333333333
No 340
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.04 E-value=2.9e+02 Score=22.85 Aligned_cols=62 Identities=10% Similarity=0.120 Sum_probs=37.3
Q ss_pred HHHHHHH---hcCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-----hHHHHHHHHHHHHCCCC
Q 048749 297 TFVNALT---KKGKLGTALRLFQAMWEKGRKPDVVTCNCIIDALCFKKR-----IPEALEVLREMKNRGCL 359 (536)
Q Consensus 297 ~li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~ 359 (536)
-+|+++. +..+.+.|+-++.+|++.| .|....-..++.+.-..|. +..|...++.....|.+
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3445543 4578888888888888888 6655555555555555554 22344455555555543
No 341
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=24.94 E-value=67 Score=25.77 Aligned_cols=92 Identities=10% Similarity=0.073 Sum_probs=51.3
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 048749 433 TYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGRL--EDALSYFHEMRLKGMVPEPRTGILVNDM 510 (536)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~l~~~ 510 (536)
....++.-|...|+.++|...++++....+ .......+|..-...++. +.+..++..+.. ++-+......-+...
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~--~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~~i~~Gf~~l 88 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKL 88 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGG--GGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 456788889899999999999998764322 122333344433333332 346677777754 554444444444444
Q ss_pred HHhhhhhh----hhhHHHHHh
Q 048749 511 NIKLKERG----EQGKKVIKL 527 (536)
Q Consensus 511 ~~~~~~~~----~a~~~~~~~ 527 (536)
+....+.. .|.+.+.++
T Consensus 89 le~ldDl~iDiP~a~~~la~f 109 (165)
T 2rg8_A 89 LKDLPELALDTPRAPQLVGQF 109 (165)
T ss_dssp HHHHHHHHHHCTTHHHHHHHH
T ss_pred HHhChhhcccccchHHHHHHH
Confidence 44444433 444444443
No 342
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.28 E-value=2.5e+02 Score=21.79 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=35.0
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048749 316 QAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKR 377 (536)
Q Consensus 316 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 377 (536)
+.+.+.|+.++.. -..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3455566664432 334555555666667778888887766655566555555566665554
No 343
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=24.09 E-value=2.6e+02 Score=21.95 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHH
Q 048749 294 TYATFVNALTKKGKLGTALRLF 315 (536)
Q Consensus 294 ~~~~li~~~~~~g~~~~a~~~~ 315 (536)
+|.-++..+.+...+-+.+..|
T Consensus 158 ~~~Ef~~~~~~~~~~~~~l~~~ 179 (183)
T 1s6c_A 158 TLDEFLESXQEDDNIMRSLQLF 179 (183)
T ss_dssp CHHHHHHHTTSCCHHHHHHHHH
T ss_pred eHHHHHHHHhcChHHHHHHHHh
Confidence 3344444433333333444433
No 344
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.96 E-value=2.5e+02 Score=21.62 Aligned_cols=61 Identities=13% Similarity=0.124 Sum_probs=36.7
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048749 316 QAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKR 377 (536)
Q Consensus 316 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 377 (536)
+.+.+.|+.++..= ..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34556676655432 34455555556666778888888776655566665555666666554
No 345
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.79 E-value=1.8e+02 Score=24.19 Aligned_cols=184 Identities=9% Similarity=-0.003 Sum_probs=90.2
Q ss_pred HHHHHccCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHh
Q 048749 163 LDVLGRARRFVELIQVFDEMP---DLVNEKTYGILLNRYAAAHMVEEAIGVFDRRKEFG----ELDDLSAFQNLLLWLCR 235 (536)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~~~~~~~ll~~~~~ 235 (536)
+..-++.|+.+.+..+++.-. ...|..-++.| ...+..|+.+-+..+++.-.... ...|..-. +.+...+.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~-t~L~~A~~ 84 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETAL-HIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ-TALHIAVI 84 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTC-CHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHH-HHHHHcCCHHHHHHHHHcCchhccccccccCCCCc-CHHHHHHH
Confidence 334456677777777776522 22232233333 33345566665555544322110 00111111 23444566
Q ss_pred cCCHHHHHHHHHHhcCCCCCCH-------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHH
Q 048749 236 YKHVEVAETFFESEKNEFGYDI-------------KTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVT--YATFVN 300 (536)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~ 300 (536)
.|+.+.+..+++.-..-...+. .-. ..+...+..|+.+-+.. +.+.|..++... -.+.+.
T Consensus 85 ~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~----Ll~~ga~~~~~d~~g~t~L~ 159 (232)
T 2rfa_A 85 NQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE-HPLSFAACVGSEEIVRL----LIEHGADIRAQDSLGNTVLH 159 (232)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCS-SHHHHHHHHTCHHHHHH----HHHTTCCTTCCCTTSCCHHH
T ss_pred cCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCC-CHHHHHHHcCCHHHHHH----HHHCCCCCCCCCCCCCCHHH
Confidence 7787777776665211000000 112 23344456677654444 445554443211 123445
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCC---------CHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048749 301 ALTKKGKLGTALRLFQAMWEKGRKP---------DVVTCNCIIDALCFKKRIPEALEVLREMK 354 (536)
Q Consensus 301 ~~~~~g~~~~a~~~~~~m~~~g~~p---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (536)
..+..|+.+-+..+++.+.+.|..+ |..-.+. +...++.|+.+-+.-+++.-.
T Consensus 160 ~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 160 ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp HHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcCc
Confidence 5667888888888888888877543 2222333 444556777766665555443
No 346
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=23.75 E-value=6.7e+02 Score=26.54 Aligned_cols=88 Identities=7% Similarity=0.009 Sum_probs=37.2
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048749 193 ILLNRYAAAHM---VEEAIGVFDRRKEFG----ELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILN 265 (536)
Q Consensus 193 ~li~~~~~~g~---~~~A~~~~~~m~~~g----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 265 (536)
.++...|..|. .++|.+.|+.....+ ++||... .+...-.+.|..++-..+++..+. ..+..--..++.
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~--~~~~~ek~~ll~ 766 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQ--AQLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHH--CCSHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHc--cCCHHHHHHHHH
Confidence 34444555554 345555555544321 3344321 122222334444443334433321 112333344555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 048749 266 GWCVLGNVYEAKRFWKDII 284 (536)
Q Consensus 266 ~~~~~g~~~~A~~~~~~m~ 284 (536)
+++...+.+...++++...
T Consensus 767 aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTT
T ss_pred HhCCCCCHHHHHHHHHHHh
Confidence 5555555555555554443
No 347
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=23.32 E-value=1.1e+02 Score=23.68 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=6.6
Q ss_pred HhcCCHHHHHHHHH
Q 048749 234 CRYKHVEVAETFFE 247 (536)
Q Consensus 234 ~~~~~~~~a~~~~~ 247 (536)
++.|+.+.+..+++
T Consensus 16 ~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 16 AKAGDVETVKKLCT 29 (165)
T ss_dssp HHHTCHHHHHHHCC
T ss_pred HHhCCHHHHHHHHH
Confidence 34455554444443
No 348
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=23.02 E-value=3.6e+02 Score=23.14 Aligned_cols=122 Identities=14% Similarity=0.114 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHHcCCCCCHhhHHHH
Q 048749 255 YDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNALTKKGK-LGTALRLFQAMWEKGRKPDVVTCNCI 333 (536)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~l 333 (536)
++..+-...+.+....|+.+ +...+..+.. .++...-...+.++.+.|. ...+...+..+.. .++..+-...
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A 212 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEA 212 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHH
Confidence 45555555555555555422 3333333333 3444444444455554441 2333333333332 2455555566
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048749 334 IDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKRMETVYEYLDEMEQ 390 (536)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 390 (536)
+.++.+.|+....-.+...+.+ ++ .-...+.++.+.|. ..+...+.++..
T Consensus 213 ~~aL~~~~~~~~~~~L~~~l~d----~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 213 IIGLSYRKDKRVLSVLCDELKK----NT--VYDDIIEAAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHTTCGGGHHHHHHHHTS----SS--CCHHHHHHHHHHCC-GGGHHHHHHHHT
T ss_pred HHHHHHhCCHhhHHHHHHHhcC----cc--HHHHHHHHHHhcCc-hhhhHHHHHHHh
Confidence 6666666654333333333322 22 11233445555555 244444544443
No 349
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.71 E-value=1.1e+02 Score=25.56 Aligned_cols=117 Identities=13% Similarity=0.231 Sum_probs=51.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCC
Q 048749 230 LLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAKRFWKDIIKSKCEPDSVT--YATFVNALTKKGK 307 (536)
Q Consensus 230 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~ 307 (536)
+...+..|+.+.+..+++.-..-...+..-. ..+...+..|+.+- ++.+.+.|..++... -.+.+...++.|+
T Consensus 115 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 189 (237)
T 3b7b_A 115 MIWATEYKHVDLVKLLLSKGSDINIRDNEEN-ICLHWAAFSGCVDI----AEILLAAKCDLHAVNIHGDSPLHIAARENR 189 (237)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHHCCHHH----HHHHHTTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCccCCCCC-CHHHHHHHCCCHHH----HHHHHHcCCCCCCcCCCCCCHHHHHHHhCC
Confidence 3344566776666666554111001111111 12233345566543 334445554443211 1122334445566
Q ss_pred HhHHHHHHHHHHHcCCCCCHhh--HHHHHHHHHhcCChHHHHHHHHHHHH
Q 048749 308 LGTALRLFQAMWEKGRKPDVVT--CNCIIDALCFKKRIPEALEVLREMKN 355 (536)
Q Consensus 308 ~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (536)
.+-+ +.+.+.|..++... -.+-+...+..|+...++++.+.+.+
T Consensus 190 ~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 190 YDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5433 34444555443221 11233444566777777777777654
No 350
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=22.63 E-value=2.8e+02 Score=21.76 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 048749 259 TMNIILNGWCVLGNVYEAKRFWK 281 (536)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~ 281 (536)
++.-++..+.+...+-++...|+
T Consensus 158 ~~~Ef~~~~~~~~~~~~~l~~~d 180 (183)
T 1s6c_A 158 TLDEFLESXQEDDNIMRSLQLFQ 180 (183)
T ss_dssp CHHHHHHHTTSCCHHHHHHHHHH
T ss_pred eHHHHHHHHhcChHHHHHHHHhh
Confidence 34444444444444444444444
No 351
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.09 E-value=7.4e+02 Score=26.40 Aligned_cols=119 Identities=11% Similarity=0.093 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHH
Q 048749 134 FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMPDL---VNEKTYGILLNRYAAAHMVEEAIGV 210 (536)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 210 (536)
+.++.|.++..|+. .++..--.+..+|...|++++|...|++.... .+.. .+ ..+....+
T Consensus 824 ~~~~~a~eL~~~~~------~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~-~~----------~~~~~~~l 886 (950)
T 4gq2_M 824 KQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ-FA----------VLREFQEI 886 (950)
T ss_dssp TCHHHHHHHGGGCC------SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCS-CG----------GGHHHHHH
T ss_pred cHHHHHHHHHhhcC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCccc-cc----------chhhhhhc
Confidence 57888887776653 34444456778888999999999999987711 1100 00 00011111
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hcCCCCCCH----HHHHHHHHHHHhcC
Q 048749 211 FDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFES-EKNEFGYDI----KTMNIILNGWCVLG 271 (536)
Q Consensus 211 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~----~~~~~li~~~~~~g 271 (536)
+.... .......-|..++..+-+.+.++.+.++-+. +..--..|. ..|+.+.++++..|
T Consensus 887 l~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 887 AEKYH--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cCccc--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 11100 0011223566777778888888777766555 221112222 35677777766554
No 352
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=21.75 E-value=3.7e+02 Score=22.84 Aligned_cols=11 Identities=9% Similarity=0.099 Sum_probs=6.6
Q ss_pred HHHHHHHHhCC
Q 048749 173 VELIQVFDEMP 183 (536)
Q Consensus 173 ~~A~~~~~~~~ 183 (536)
..+..+|..+.
T Consensus 129 ~~~~~~f~~~D 139 (256)
T 2jul_A 129 TYAHFLFNAFD 139 (256)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHhc
Confidence 44566666665
No 353
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.62 E-value=2.5e+02 Score=21.70 Aligned_cols=60 Identities=12% Similarity=0.162 Sum_probs=36.2
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048749 316 QAMWEKGRKPDVVTCNCIIDALCFKKRIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIKR 377 (536)
Q Consensus 316 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 377 (536)
+.+.+.|+.++..= ..++..+...+ .-.|.++++.+.+.+...+..|..--+..+...|-
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34455677665432 33444555555 66788888888777666666665555666666554
No 354
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.44 E-value=1.6e+02 Score=23.77 Aligned_cols=53 Identities=6% Similarity=0.050 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCH-hHHHHHHHHHHH-cCCCCC
Q 048749 274 YEAKRFWKDIIKSKCEPDSVT---YATFVNALTKKGKL-GTALRLFQAMWE-KGRKPD 326 (536)
Q Consensus 274 ~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~-~~a~~~~~~m~~-~g~~p~ 326 (536)
....++.+.+++.|..++... .++.+...+..+.. ..-..+++.+.+ .|..++
T Consensus 91 ~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp HHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred hhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc
Confidence 334455555566554444321 10222222222322 233455555666 555443
No 355
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=21.40 E-value=1.7e+02 Score=24.13 Aligned_cols=15 Identities=7% Similarity=-0.011 Sum_probs=7.4
Q ss_pred HHhcCCHHHHHHHHH
Q 048749 233 LCRYKHVEVAETFFE 247 (536)
Q Consensus 233 ~~~~~~~~~a~~~~~ 247 (536)
.+..|+.+.+..+++
T Consensus 65 A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 65 AVSADAQGVFQILIR 79 (223)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 344555555544444
No 356
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.29 E-value=3.5e+02 Score=22.35 Aligned_cols=34 Identities=15% Similarity=0.040 Sum_probs=17.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048749 269 VLGNVYEAKRFWKDIIKSKCEPDSVTYATFVNAL 302 (536)
Q Consensus 269 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 302 (536)
+-.+.+.|+-++-.|++.|..|.-..-..++-+.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3455666666666666665444433333333333
No 357
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.25 E-value=2.3e+02 Score=20.27 Aligned_cols=57 Identities=11% Similarity=0.133 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH-----HCCCCCCHHHHHHH
Q 048749 414 EVPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEME-----KKGMGPDQRSYTVM 472 (536)
Q Consensus 414 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~l 472 (536)
.+.++.+++...|+.|+..+..-++..|...+- + +.++.++.. ..|..|+..+.+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 467888889999999999888888888887764 3 444433322 34666776666544
No 358
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=21.03 E-value=3.4e+02 Score=23.06 Aligned_cols=66 Identities=15% Similarity=0.069 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHhcc---CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhCC
Q 048749 118 LTLTDDLIVNVINRYR---FDWEAAYTFFKWVSREGDYSPGSNVFNAILDVLGRARRFVELIQVFDEMP 183 (536)
Q Consensus 118 ~~~~~~~~~~~l~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 183 (536)
-.++...+..++.... ........+|+.+...+.-..+..-+..++..+.....-++...+|+.+.
T Consensus 107 G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D 175 (256)
T 2jul_A 107 GLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYD 175 (256)
T ss_dssp SSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhC
Confidence 3466666666666542 23345566676665443222333334444444433333445555666554
No 359
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.81 E-value=2.9e+02 Score=21.23 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=27.6
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048749 421 RMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGPDQRSYTVMIHGLYDKGR 481 (536)
Q Consensus 421 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 481 (536)
.+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|.---+..+...|-
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34445555443322 2333333344445566666666555444444444444444444443
No 360
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.70 E-value=3.1e+02 Score=21.53 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=28.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 048749 415 VPWVLERMERNGCKMSTDTYNVILKLYVNWDCEDKVRHTWEEMEKKGMGP 464 (536)
Q Consensus 415 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 464 (536)
+..+++.+.+.|.--|...-...+....+.| .....+-.++...|+.+
T Consensus 49 i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~ 96 (159)
T 3c1d_A 49 YERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISR 96 (159)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCH
Confidence 4566666666766655555555566555543 23556666777777643
No 361
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.46 E-value=2.9e+02 Score=21.46 Aligned_cols=62 Identities=16% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048749 314 LFQAMWEKGRKPDVVTCNCIIDALCFKK-RIPEALEVLREMKNRGCLPNVTTYNSLIKHLCKIK 376 (536)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 376 (536)
+.+.+.+.|+. -...-..++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 4 ~~~~l~~~g~r-~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 4 NNQALKDAGLK-VTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHHHTTCC-CCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCC-CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
No 362
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.43 E-value=6e+02 Score=24.75 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048749 223 LSAFQNLLLWLCRYKHVEVAETFFESE 249 (536)
Q Consensus 223 ~~~~~~ll~~~~~~~~~~~a~~~~~~~ 249 (536)
...+|.++..|...+.++.|..+....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 334445555555555555555555553
No 363
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=20.32 E-value=1.5e+02 Score=17.67 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=23.2
Q ss_pred HHHHhhcCCCCCHHHHHHHHHhccCCHHHHHHHH
Q 048749 110 EKALNQCELTLTDDLIVNVINRYRFDWEAAYTFF 143 (536)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~ 143 (536)
...|..+|. .+....+.+|....|+.+.|.+.+
T Consensus 11 i~~L~~MGF-~d~~~~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 11 LRQLNDMGF-FDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCC-CcHHHHHHHHHHhCCCHHHHHHHH
Confidence 355566774 356667888888888998887654
No 364
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=20.13 E-value=1.3e+02 Score=24.31 Aligned_cols=81 Identities=7% Similarity=-0.091 Sum_probs=35.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048749 198 YAAAHMVEEAIGVFDRRKEFGELDDLSAFQNLLLWLCRYKHVEVAETFFESEKNEFGYDIKTMNIILNGWCVLGNVYEAK 277 (536)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 277 (536)
.+..|+.+....++..-...--..|..-. +.+...++.|+.+.+..+++.-..-...+..-++. +...+..|+.+-+.
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~~~ 89 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGN-TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSP-YLYAGAQGRTEILA 89 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSC-CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHH
Confidence 35567776666665422100001111112 23444556777777766665421100111111222 23344566666555
Q ss_pred HHH
Q 048749 278 RFW 280 (536)
Q Consensus 278 ~~~ 280 (536)
.++
T Consensus 90 ~Ll 92 (201)
T 3hra_A 90 YML 92 (201)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 365
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=20.08 E-value=6.2e+02 Score=24.72 Aligned_cols=32 Identities=0% Similarity=-0.060 Sum_probs=20.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH
Q 048749 471 VMIHGLYDKGRLEDALSYFHEMRLKGMVPEPR 502 (536)
Q Consensus 471 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 502 (536)
.|-.-|.++|++-+|-+++..+-..+..++-.
T Consensus 222 LLWryy~k~~~~~~AA~VL~~LA~s~~~i~L~ 253 (525)
T 3i5p_A 222 ILWVYYSRRSKFFESAEILYRLATSNFDITLF 253 (525)
T ss_dssp HHHTHHHHCCSHHHHHHHHHHHHSSSSCCCHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhCCCCCCHH
Confidence 33345667777877777777777665444433
Done!