Your job contains 1 sequence.
>048750
MQTKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPV
QVRDTALSINSNDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKARPSDTILKLQRTQP
YYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLNKA
GEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTR
EGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAAIAHSGMLPRSLISQ
QQNQYQQPGAQDQAAPTPYFNIPPPPQQDRAYYPSMDPQRMGAL
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 048750
(344 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2025077 - symbol:MAC5A "MOS4-associated comple... 1349 8.3e-138 1
TAIR|locus:2043157 - symbol:MAC5B "MOS4-associated comple... 1345 2.2e-137 1
TAIR|locus:2169429 - symbol:MAC5C "MOS4-associated comple... 940 4.6e-101 2
UNIPROTKB|F1NMD7 - symbol:RBM22 "Pre-mRNA-splicing factor... 857 8.0e-91 2
UNIPROTKB|Q5ZM16 - symbol:RBM22 "Pre-mRNA-splicing factor... 852 2.7e-90 2
UNIPROTKB|F2Z4G3 - symbol:RBM22 "Pre-mRNA-splicing factor... 851 3.4e-90 2
UNIPROTKB|Q9NW64 - symbol:RBM22 "Pre-mRNA-splicing factor... 851 3.4e-90 2
UNIPROTKB|Q4R4J1 - symbol:RBM22 "Pre-mRNA-splicing factor... 851 3.4e-90 2
UNIPROTKB|Q5RAY5 - symbol:RBM22 "Pre-mRNA-splicing factor... 851 3.4e-90 2
MGI|MGI:1914060 - symbol:Rbm22 "RNA binding motif protein... 851 3.4e-90 2
RGD|1305770 - symbol:Rbm22 "RNA binding motif protein 22"... 850 4.4e-90 2
ZFIN|ZDB-GENE-040426-2298 - symbol:rbm22 "RNA binding mot... 852 5.6e-90 2
UNIPROTKB|Q3B7L8 - symbol:RBM22 "Pre-mRNA-splicing factor... 847 9.0e-90 2
UNIPROTKB|Q6P616 - symbol:rbm22 "Pre-mRNA-splicing factor... 851 1.5e-89 2
UNIPROTKB|Q7ZXB5 - symbol:rbm22 "Pre-mRNA-splicing factor... 849 2.4e-89 2
UNIPROTKB|E2RG35 - symbol:RBM22 "Uncharacterized protein"... 840 5.0e-89 2
UNIPROTKB|I3LKW5 - symbol:RBM22 "Uncharacterized protein"... 827 1.2e-87 2
FB|FBgn0037220 - symbol:CG14641 species:7227 "Drosophila ... 817 2.1e-86 2
WB|WBGene00011722 - symbol:T11G6.8 species:6239 "Caenorha... 775 1.1e-80 2
UNIPROTKB|F5GWK3 - symbol:RBM22 "Pre-mRNA-splicing factor... 611 6.8e-65 2
DICTYBASE|DDB_G0290649 - symbol:DDB_G0290649 "RNA-binding... 520 1.1e-52 2
UNIPROTKB|E5RJW4 - symbol:RBM22 "Pre-mRNA-splicing factor... 522 3.6e-50 1
GENEDB_PFALCIPARUM|PFL2310w - symbol:PFL2310w "hypothetic... 514 2.5e-49 1
UNIPROTKB|Q8I4V2 - symbol:PFL2310w "Pre-mRNA-splicing fac... 514 2.5e-49 1
UNIPROTKB|Q2KH70 - symbol:MGCH7_ch7g115 "Putative unchara... 300 1.6e-43 2
ASPGD|ASPL0000064523 - symbol:AN7145 species:162425 "Emer... 426 5.3e-40 1
POMBASE|SPCC550.02c - symbol:cwf5 "RNA-binding protein Cw... 378 6.5e-35 1
TAIR|locus:2146668 - symbol:AT5G04210 species:3702 "Arabi... 270 1.8e-23 1
CGD|CAL0004353 - symbol:orf19.5364 species:5476 "Candida ... 189 5.2e-14 2
CGD|CAL0001095 - symbol:orf19.674 species:5476 "Candida a... 170 2.7e-10 1
UNIPROTKB|Q59W50 - symbol:CWC2 "Pre-mRNA-splicing factor ... 170 2.7e-10 1
SGD|S000000269 - symbol:ECM2 "Pre-mRNA splicing factor" s... 162 1.8e-09 2
DICTYBASE|DDB_G0284563 - symbol:cwc2 "pre-mRNA-splicing f... 165 2.2e-09 1
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 157 1.3e-08 1
UNIPROTKB|Q51TF7 - symbol:CWC2 "Pre-mRNA-splicing factor ... 155 1.7e-08 1
UNIPROTKB|Q4WU07 - symbol:cwc2 "Pre-mRNA-splicing factor ... 155 1.9e-08 1
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 154 2.8e-08 1
UNIPROTKB|Q6C007 - symbol:CWC2 "Pre-mRNA-splicing factor ... 150 4.9e-08 2
UNIPROTKB|Q6BLU8 - symbol:CWC2 "Pre-mRNA-splicing factor ... 149 6.1e-08 1
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 149 1.1e-07 1
UNIPROTKB|Q6T412 - symbol:CWC2 "Pre-mRNA-splicing factor ... 148 1.3e-07 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 148 1.3e-07 1
ASPGD|ASPL0000043504 - symbol:AN2245 species:162425 "Emer... 146 2.1e-07 1
UNIPROTKB|Q5BB35 - symbol:cwc2 "Pre-mRNA-splicing factor ... 146 2.1e-07 1
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 143 4.9e-07 1
POMBASE|SPAC3A12.11c - symbol:cwf2 "RNA-binding protein C... 140 8.6e-07 1
DICTYBASE|DDB_G0291386 - symbol:DDB_G0291386 "RNA recogni... 140 1.2e-06 1
UNIPROTKB|I3LRX5 - symbol:TIA1 "Uncharacterized protein" ... 127 1.7e-06 2
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 133 2.5e-06 2
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 134 4.2e-06 1
CGD|CAL0004999 - symbol:orf19.6790 species:5476 "Candida ... 138 5.0e-06 1
UNIPROTKB|P0CR14 - symbol:CWC2 "Pre-mRNA-splicing factor ... 132 5.4e-06 1
UNIPROTKB|P0CR15 - symbol:CWC2 "Pre-mRNA-splicing factor ... 132 5.4e-06 1
UNIPROTKB|Q49AS9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 129 5.5e-06 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 133 5.8e-06 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 128 6.7e-06 3
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 131 8.9e-06 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 131 1.0e-05 1
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 129 1.4e-05 1
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 129 1.4e-05 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 129 1.4e-05 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 129 1.5e-05 1
ASPGD|ASPL0000000121 - symbol:AN6331 species:162425 "Emer... 117 1.5e-05 2
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 129 1.5e-05 1
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 129 1.5e-05 1
UNIPROTKB|E2RA41 - symbol:TIAL1 "Uncharacterized protein"... 129 1.5e-05 1
UNIPROTKB|F2Z5F9 - symbol:LOC100736782 "Uncharacterized p... 129 1.5e-05 1
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 129 1.5e-05 1
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 129 1.5e-05 1
UNIPROTKB|F5H8B8 - symbol:NOL8 "Nucleolar protein 8" spec... 107 1.8e-05 1
WB|WBGene00017929 - symbol:grld-1 species:6239 "Caenorhab... 130 1.9e-05 1
WB|WBGene00007396 - symbol:tiar-3 species:6239 "Caenorhab... 129 2.0e-05 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 124 2.1e-05 2
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 127 2.3e-05 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 127 2.4e-05 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 126 2.6e-05 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 127 2.8e-05 1
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 127 3.0e-05 2
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 127 3.0e-05 2
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 127 3.1e-05 2
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 127 3.1e-05 2
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 127 3.3e-05 2
UNIPROTKB|F1SF34 - symbol:F1SF34 "Uncharacterized protein... 122 3.5e-05 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 129 4.2e-05 1
UNIPROTKB|F5H0I5 - symbol:NOL8 "Nucleolar protein 8" spec... 103 5.0e-05 1
UNIPROTKB|F5H532 - symbol:NOL8 "Nucleolar protein 8" spec... 103 5.0e-05 1
FB|FBgn0015520 - symbol:nonA-l "nonA-like" species:7227 "... 127 5.5e-05 1
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 124 5.5e-05 1
FB|FBgn0263396 - symbol:sqd "squid" species:7227 "Drosoph... 122 7.4e-05 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 101 8.2e-05 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 101 8.2e-05 1
ZFIN|ZDB-GENE-051120-15 - symbol:zgc:123010 "zgc:123010" ... 124 8.3e-05 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 123 8.3e-05 1
DICTYBASE|DDB_G0271014 - symbol:DDB_G0271014 species:4468... 124 0.00011 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 122 0.00011 1
UNIPROTKB|G4NC92 - symbol:MGG_01109 "Nuclear cap-binding ... 108 0.00011 1
RGD|1305683 - symbol:Syncrip "synaptotagmin binding, cyto... 122 0.00015 1
UNIPROTKB|Q7TP47 - symbol:Syncrip "Heterogeneous nuclear ... 122 0.00015 1
TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi... 98 0.00018 1
TAIR|locus:2018794 - symbol:UBP1B "oligouridylate binding... 120 0.00018 1
WARNING: Descriptions of 30 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2025077 [details] [associations]
symbol:MAC5A "MOS4-associated complex subunit 5A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IGI] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0042742 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
ProtClustDB:CLSN2913258 EMBL:AC022464 EMBL:AY054519 EMBL:AY114632
IPI:IPI00518267 PIR:F86208 RefSeq:NP_563788.1 UniGene:At.25418
HSSP:P18615 ProteinModelPortal:Q9LNV5 SMR:Q9LNV5 IntAct:Q9LNV5
STRING:Q9LNV5 PaxDb:Q9LNV5 PRIDE:Q9LNV5 EnsemblPlants:AT1G07360.1
GeneID:837248 KEGG:ath:AT1G07360 TAIR:At1g07360 InParanoid:Q9LNV5
OMA:ILADKAC PhylomeDB:Q9LNV5 Genevestigator:Q9LNV5 Uniprot:Q9LNV5
Length = 481
Score = 1349 (479.9 bits), Expect = 8.3e-138, P = 8.3e-138
Identities = 255/342 (74%), Positives = 290/342 (84%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
TKA+YDKECKICTRPFTVFRWRPGRDAR+KKTEICQTC KLKNVCQVCLLDLEYGLPVQV
Sbjct: 36 TKANYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQV 95
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKARPSDTILKLQRTQPYY 122
RDTAL+I+++D+IPKSDVNREYFAEEHDR+ARAG+DYESS+GK RP+DTILKLQRT PYY
Sbjct: 96 RDTALNISTHDSIPKSDVNREYFAEEHDRKARAGLDYESSFGKMRPNDTILKLQRTTPYY 155
Query: 123 KRNRAHVCSFYVRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLNKAGE 182
KRNRAHVCSF++RGECTRGAECPYRHEMP TGELSQQNIKDRYYGVNDPVA+KLL KAGE
Sbjct: 156 KRNRAHVCSFFIRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVAMKLLGKAGE 215
Query: 183 MPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREG 242
M +LE P+DESIKTLYVGG+++RI EQD+RD FYAHGEIESI++ KA AFVTYT+REG
Sbjct: 216 MGTLESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREG 275
Query: 243 AEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAAIAHSGMLPRSLISXXX 302
AEKAA+ELSN+LVI G RLKL WG+P +P+ D QQ +AHSG+LPR++IS
Sbjct: 276 AEKAAQELSNRLVINGQRLKLTWGRP---KPD---QDGANQQGGVAHSGLLPRAVISQQH 329
Query: 303 XXXXXXXXXXXXXXXXYFNIPPPPQQDRAYYPSMDPQRMGAL 344
Y+ PPP QD+ YYPSMDPQRMGA+
Sbjct: 330 NQPPPMQQ--------YYMHPPPANQDKPYYPSMDPQRMGAV 363
>TAIR|locus:2043157 [details] [associations]
symbol:MAC5B "MOS4-associated complex subunit 5B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC004561 EMBL:AF428354
EMBL:BT002621 IPI:IPI00535091 PIR:A84698 RefSeq:NP_180518.1
UniGene:At.12692 ProteinModelPortal:Q9ZW36 SMR:Q9ZW36 PRIDE:Q9ZW36
EnsemblPlants:AT2G29580.1 GeneID:817507 KEGG:ath:AT2G29580
TAIR:At2g29580 eggNOG:NOG277760 HOGENOM:HOG000171086
InParanoid:Q9ZW36 KO:K12872 OMA:RNRAHIC PhylomeDB:Q9ZW36
ProtClustDB:CLSN2913258 Genevestigator:Q9ZW36 Uniprot:Q9ZW36
Length = 483
Score = 1345 (478.5 bits), Expect = 2.2e-137, P = 2.2e-137
Identities = 251/345 (72%), Positives = 293/345 (84%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
TKA+YDKECKICTRPFTVFRWRPGRDAR+KKTE+CQTC KLKNVCQVCLLDLEYGLPVQV
Sbjct: 36 TKANYDKECKICTRPFTVFRWRPGRDARYKKTEVCQTCCKLKNVCQVCLLDLEYGLPVQV 95
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKARPSDTILKLQRTQPYY 122
RDTAL+I+++D+IPKSDVNRE+FAEEHDR+ RAG+DYESS+GK RP+DTI LQRT PYY
Sbjct: 96 RDTALNISTHDSIPKSDVNREFFAEEHDRKTRAGLDYESSFGKIRPNDTIRMLQRTTPYY 155
Query: 123 KRNRAHVCSFYVRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLNKAGE 182
KRNRAH+CSF++RGECTRG ECPYRHEMP TGELSQQNIKDRYYGVNDPVALKLL KAGE
Sbjct: 156 KRNRAHICSFFIRGECTRGDECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGE 215
Query: 183 MPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREG 242
M +LE PED+SI+TLYVGG+++R+ EQD+RD FYAHGEIESI++ +KA AFVTYTTREG
Sbjct: 216 MGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREG 275
Query: 243 AEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAAIAHSGMLPRSLISXXX 302
AEKAAEELSN+LV+ G RLKL WG+PQ +P+ + S+ QQ ++AHSG+LPR++IS
Sbjct: 276 AEKAAEELSNRLVVNGQRLKLTWGRPQVPKPDQDGSN---QQGSVAHSGLLPRAVISQQQ 332
Query: 303 XXXXXXXXXXXXXXXXYFNIPPPPQ---QDRAYYPSMDPQRMGAL 344
Y+ PPPPQ QDR +YPSMDPQRMGA+
Sbjct: 333 NQPPPMLQ--------YYMHPPPPQPPHQDRPFYPSMDPQRMGAV 369
>TAIR|locus:2169429 [details] [associations]
symbol:MAC5C "MOS4-associated complex subunit 5C"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AB010697 eggNOG:NOG277760 HOGENOM:HOG000171086
KO:K12872 EMBL:DQ446923 EMBL:DQ653266 IPI:IPI00544129
RefSeq:NP_196323.1 UniGene:At.54760 ProteinModelPortal:Q9FL40
SMR:Q9FL40 EnsemblPlants:AT5G07060.1 GeneID:830597
KEGG:ath:AT5G07060 TAIR:At5g07060 InParanoid:Q9FL40 OMA:PITCESC
PhylomeDB:Q9FL40 ArrayExpress:Q9FL40 Genevestigator:Q9FL40
Uniprot:Q9FL40
Length = 363
Score = 940 (336.0 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 168/224 (75%), Positives = 200/224 (89%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
T+ADYDKECKIC+RPFT FRWRPGR+ARFKKTEICQTCSKLKNVCQVCLLDL +GLPVQV
Sbjct: 33 TRADYDKECKICSRPFTAFRWRPGRNARFKKTEICQTCSKLKNVCQVCLLDLGFGLPVQV 92
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKARPSDTILKLQRTQPYY 122
RD+AL+INS+ ++P S VNREYFA+EHD + RAG+DYESS+GK +P+DTILKLQR P Y
Sbjct: 93 RDSALNINSHYSVPMSHVNREYFADEHDPKTRAGLDYESSFGKMQPNDTILKLQRRTPSY 152
Query: 123 KRNRAHVCSFYVRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLNKAGE 182
++NR +CSFY G+C RGAEC +RHEMP TGELS QNI+DRYY VNDPVA+KLL KAGE
Sbjct: 153 EKNRPKICSFYTIGQCKRGAECSFRHEMPETGELSHQNIRDRYYSVNDPVAMKLLRKAGE 212
Query: 183 MPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKM 226
M +LEPPEDESIKTLYVGG+++RI EQD+ D+FYA+GE+ESI++
Sbjct: 213 MGTLEPPEDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRV 256
Score = 82 (33.9 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 276 ESSDEVRQQAAIAHSGMLPRSLISXXXXXXXXXXXXXXXXXXXYFNIPPPPQQDRAYYPS 335
+S +QQ +IAH+G++ + Y+ PPPP + ++YPS
Sbjct: 265 QSGSNQQQQGSIAHTGLISQQ-------------QNQHSQMQQYYMQPPPPNE-YSHYPS 310
Query: 336 MDPQRMGA 343
MD QRMGA
Sbjct: 311 MDTQRMGA 318
>UNIPROTKB|F1NMD7 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000060 "protein
import into nucleus, translocation" evidence=IEA] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0033120 "positive regulation of RNA splicing" evidence=IEA]
[GO:0033554 "cellular response to stress" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=IEA] [GO:0048306 "calcium-dependent
protein binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0090316 "positive regulation of
intracellular protein transport" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0000060 GO:GO:0090316 GO:GO:0071013
GO:GO:0017069 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120
GO:GO:0005487 IPI:IPI00593663 GeneTree:ENSGT00390000002792
OMA:CAFVQYT EMBL:AADN02028638 PRIDE:F1NMD7
Ensembl:ENSGALT00000007249 Uniprot:F1NMD7
Length = 420
Score = 857 (306.7 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
Identities = 174/331 (52%), Positives = 216/331 (65%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
TK Y KECKIC RPFTVFRW PG RFKKTE+CQTCSKLKNVCQ CLLDLEYGLP+QV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRR-ARA-GIDYESSYGKARP-SDTILKLQRTQ 119
RD LS+ D +PKSDVN+EY+ + +R A + G + GKA SD +LKL RT
Sbjct: 97 RDAGLSLK--DEMPKSDVNKEYYTQNMEREIANSDGTRPVGALGKATSTSDMLLKLARTT 154
Query: 120 PYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKLL 177
PYYKRNR H+CSF+V+GEC RG ECPYRHE P + L+ QNIKDRYYG+NDPVA KLL
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLL 214
Query: 178 NKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTY 237
+A MP L+PP+D++I TLYVGG+ ITE DLR++FY GEI +I + ++ AF+ +
Sbjct: 215 KRASTMPRLDPPDDKTITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQF 274
Query: 238 TTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAAIAHSGMLPRSL 297
TR+ AE AAE+ NKL++ G RL + WG+ Q R G+ D+ SG +
Sbjct: 275 ATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAAR--GKEKDK----EGTTESG-IKLEP 327
Query: 298 ISXXXXXXXXXXXXXXXXXXXYFNIPP--PP 326
+ YFN+PP PP
Sbjct: 328 VPGLPGALPPPPAAEEEASANYFNLPPSGPP 358
Score = 68 (29.0 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 323 PPPPQQDRA----YYPSMDPQRMGA 343
PPPP RA +YPS DPQRMGA
Sbjct: 389 PPPPFM-RAPGPIHYPSQDPQRMGA 412
>UNIPROTKB|Q5ZM16 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006913 "nucleocytoplasmic
transport" evidence=ISS] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0090316 "positive regulation of intracellular
protein transport" evidence=ISS] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=ISS] [GO:0017069 "snRNA binding"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316 GO:GO:0017069
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872 GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 GO:GO:0005487 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW EMBL:AJ719568 IPI:IPI00593663
RefSeq:NP_001006151.1 UniGene:Gga.4751 HSSP:Q6PHZ5
ProteinModelPortal:Q5ZM16 SMR:Q5ZM16 STRING:Q5ZM16 GeneID:416270
KEGG:gga:416270 InParanoid:Q5ZM16 NextBio:20819755 Uniprot:Q5ZM16
Length = 420
Score = 852 (305.0 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 173/331 (52%), Positives = 216/331 (65%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
TK Y KECKIC RPFTVFRW PG RFKKTE+CQTCSKLKNVCQ CLLDLEYGLP+QV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRR-ARA-GIDYESSYGKARP-SDTILKLQRTQ 119
RD LS+ D +PKSDVN+EY+ + +R A + G + GKA SD +LKL RT
Sbjct: 97 RDAGLSLK--DEMPKSDVNKEYYTQNMEREIANSDGTRPVGALGKATSTSDMLLKLARTT 154
Query: 120 PYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKLL 177
PYYKRNR H+CSF+V+GEC RG ECPYRHE P + L+ Q+IKDRYYG+NDPVA KLL
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQDIKDRYYGINDPVADKLL 214
Query: 178 NKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTY 237
+A MP L+PP+D++I TLYVGG+ ITE DLR++FY GEI +I + ++ AF+ +
Sbjct: 215 KRASTMPRLDPPDDKTITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQF 274
Query: 238 TTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAAIAHSGMLPRSL 297
TR+ AE AAE+ NKL++ G RL + WG+ Q R G+ D+ SG +
Sbjct: 275 ATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAAR--GKEKDK----EGTTESG-IKLEP 327
Query: 298 ISXXXXXXXXXXXXXXXXXXXYFNIPP--PP 326
+ YFN+PP PP
Sbjct: 328 VPGLPGALPPPPAAEEEASANYFNLPPSGPP 358
Score = 68 (29.0 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 323 PPPPQQDRA----YYPSMDPQRMGA 343
PPPP RA +YPS DPQRMGA
Sbjct: 389 PPPPFM-RAPGPIHYPSQDPQRMGA 412
>UNIPROTKB|F2Z4G3 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9913
"Bos taurus" [GO:0090316 "positive regulation of intracellular
protein transport" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048306 "calcium-dependent protein
binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0033554 "cellular response to stress"
evidence=IEA] [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=IEA] [GO:0000060 "protein import
into nucleus, translocation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005737 GO:GO:0033554
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0000060 GO:GO:0090316 GO:GO:0071013 GO:GO:0017069 OMA:ILADKAC
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
UniGene:Bt.28600 GeneTree:ENSGT00390000002792 EMBL:DAAA02020630
IPI:IPI00716918 ProteinModelPortal:F2Z4G3 SMR:F2Z4G3 PRIDE:F2Z4G3
Ensembl:ENSBTAT00000042873 NextBio:20925883 Uniprot:F2Z4G3
Length = 420
Score = 851 (304.6 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 164/282 (58%), Positives = 199/282 (70%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
TK Y KECKIC RPFTVFRW PG RFKKTE+CQTCSKLKNVCQ CLLDLEYGLP+QV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRRARA--GIDYESSYGKARP-SDTILKLQRTQ 119
RD LS D +PKSDVN+EY+ + +R G GKA SD +LKL RT
Sbjct: 97 RDAGLSFK--DDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTT 154
Query: 120 PYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKLL 177
PYYKRNR H+CSF+V+GEC RG ECPYRHE P + L+ QNIKDRYYG+NDPVA KLL
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLL 214
Query: 178 NKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTY 237
+A MP L+PPED++I TLYVGG+ ITE DLR++FY GEI +I + ++ AF+ +
Sbjct: 215 KRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQF 274
Query: 238 TTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSD 279
TR+ AE AAE+ NKL++ G RL + WG+ Q R + + D
Sbjct: 275 ATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKD 316
Score = 68 (29.0 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 323 PPPPQQDRA----YYPSMDPQRMGA 343
PPPP RA +YPS DPQRMGA
Sbjct: 389 PPPPFM-RAPGPIHYPSQDPQRMGA 412
>UNIPROTKB|Q9NW64 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000060 "protein import into nucleus,
translocation" evidence=IDA] [GO:0048306 "calcium-dependent protein
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IDA] [GO:0090316 "positive
regulation of intracellular protein transport" evidence=IDA]
[GO:0033120 "positive regulation of RNA splicing" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IDA]
[GO:0017069 "snRNA binding" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0005737 EMBL:CH471062 GO:GO:0033554
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0000060 GO:GO:0090316 GO:GO:0071013 GO:GO:0017069
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 EMBL:AC008453
GO:GO:0005487 CTD:55696 HOVERGEN:HBG083475 OrthoDB:EOG40S0FW
EMBL:AL136933 EMBL:AK001152 EMBL:AK297019 EMBL:BC003402 EMBL:U39402
IPI:IPI00019046 IPI:IPI00909290 RefSeq:NP_060517.1
UniGene:Hs.713564 PDB:2YTC PDBsum:2YTC ProteinModelPortal:Q9NW64
SMR:Q9NW64 IntAct:Q9NW64 STRING:Q9NW64 PhosphoSite:Q9NW64
DMDM:74762758 PaxDb:Q9NW64 PRIDE:Q9NW64 DNASU:55696
Ensembl:ENST00000199814 Ensembl:ENST00000447771 GeneID:55696
KEGG:hsa:55696 UCSC:uc003lst.3 GeneCards:GC05M150050
HGNC:HGNC:25503 HPA:HPA001634 MIM:612430 neXtProt:NX_Q9NW64
PharmGKB:PA134982384 InParanoid:Q9NW64 EvolutionaryTrace:Q9NW64
GenomeRNAi:55696 NextBio:60521 ArrayExpress:Q9NW64 Bgee:Q9NW64
CleanEx:HS_RBM22 Genevestigator:Q9NW64 GermOnline:ENSG00000086589
Uniprot:Q9NW64
Length = 420
Score = 851 (304.6 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 164/282 (58%), Positives = 199/282 (70%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
TK Y KECKIC RPFTVFRW PG RFKKTE+CQTCSKLKNVCQ CLLDLEYGLP+QV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRRARA--GIDYESSYGKARP-SDTILKLQRTQ 119
RD LS D +PKSDVN+EY+ + +R G GKA SD +LKL RT
Sbjct: 97 RDAGLSFK--DDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTT 154
Query: 120 PYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKLL 177
PYYKRNR H+CSF+V+GEC RG ECPYRHE P + L+ QNIKDRYYG+NDPVA KLL
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLL 214
Query: 178 NKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTY 237
+A MP L+PPED++I TLYVGG+ ITE DLR++FY GEI +I + ++ AF+ +
Sbjct: 215 KRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQF 274
Query: 238 TTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSD 279
TR+ AE AAE+ NKL++ G RL + WG+ Q R + + D
Sbjct: 275 ATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKD 316
Score = 68 (29.0 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 323 PPPPQQDRA----YYPSMDPQRMGA 343
PPPP RA +YPS DPQRMGA
Sbjct: 389 PPPPFM-RAPGPIHYPSQDPQRMGA 412
>UNIPROTKB|Q4R4J1 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9541
"Macaca fascicularis" [GO:0005487 "nucleocytoplasmic transporter
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006913
"nucleocytoplasmic transport" evidence=ISS] [GO:0017069 "snRNA
binding" evidence=ISS] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0090316 "positive regulation of intracellular protein
transport" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316 GO:GO:0017069
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
HOVERGEN:HBG083475 HSSP:Q6PHZ5 EMBL:AB169903
ProteinModelPortal:Q4R4J1 SMR:Q4R4J1 PRIDE:Q4R4J1 Uniprot:Q4R4J1
Length = 420
Score = 851 (304.6 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 164/282 (58%), Positives = 199/282 (70%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
TK Y KECKIC RPFTVFRW PG RFKKTE+CQTCSKLKNVCQ CLLDLEYGLP+QV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRRARA--GIDYESSYGKARP-SDTILKLQRTQ 119
RD LS D +PKSDVN+EY+ + +R G GKA SD +LKL RT
Sbjct: 97 RDAGLSFK--DDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTT 154
Query: 120 PYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKLL 177
PYYKRNR H+CSF+V+GEC RG ECPYRHE P + L+ QNIKDRYYG+NDPVA KLL
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLL 214
Query: 178 NKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTY 237
+A MP L+PPED++I TLYVGG+ ITE DLR++FY GEI +I + ++ AF+ +
Sbjct: 215 KRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQF 274
Query: 238 TTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSD 279
TR+ AE AAE+ NKL++ G RL + WG+ Q R + + D
Sbjct: 275 ATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKD 316
Score = 68 (29.0 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 323 PPPPQQDRA----YYPSMDPQRMGA 343
PPPP RA +YPS DPQRMGA
Sbjct: 389 PPPPFM-RAPGPIHYPSQDPQRMGA 412
>UNIPROTKB|Q5RAY5 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9601
"Pongo abelii" [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0017069 "snRNA binding" evidence=ISS] [GO:0033120
"positive regulation of RNA splicing" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0036002 "pre-mRNA
binding" evidence=ISS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0090316 "positive regulation of
intracellular protein transport" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0033554 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316
GO:GO:0017069 KO:K12872 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120
GO:GO:0005487 CTD:55696 HOVERGEN:HBG083475 HSSP:Q6PHZ5
EMBL:CR858876 RefSeq:NP_001125624.1 UniGene:Pab.12645
ProteinModelPortal:Q5RAY5 SMR:Q5RAY5 GeneID:100172542
KEGG:pon:100172542 InParanoid:Q5RAY5 Uniprot:Q5RAY5
Length = 420
Score = 851 (304.6 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 164/282 (58%), Positives = 199/282 (70%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
TK Y KECKIC RPFTVFRW PG RFKKTE+CQTCSKLKNVCQ CLLDLEYGLP+QV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRRARA--GIDYESSYGKARP-SDTILKLQRTQ 119
RD LS D +PKSDVN+EY+ + +R G GKA SD +LKL RT
Sbjct: 97 RDAGLSFK--DDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTT 154
Query: 120 PYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKLL 177
PYYKRNR H+CSF+V+GEC RG ECPYRHE P + L+ QNIKDRYYG+NDPVA KLL
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLL 214
Query: 178 NKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTY 237
+A MP L+PPED++I TLYVGG+ ITE DLR++FY GEI +I + ++ AF+ +
Sbjct: 215 KRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQF 274
Query: 238 TTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSD 279
TR+ AE AAE+ NKL++ G RL + WG+ Q R + + D
Sbjct: 275 ATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKD 316
Score = 68 (29.0 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 323 PPPPQQDRA----YYPSMDPQRMGA 343
PPPP RA +YPS DPQRMGA
Sbjct: 389 PPPPFM-RAPGPIHYPSQDPQRMGA 412
>MGI|MGI:1914060 [details] [associations]
symbol:Rbm22 "RNA binding motif protein 22" species:10090
"Mus musculus" [GO:0000060 "protein import into nucleus,
translocation" evidence=ISO] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=ISO] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISO] [GO:0033554 "cellular response to stress"
evidence=ISO] [GO:0036002 "pre-mRNA binding" evidence=ISO]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048306
"calcium-dependent protein binding" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0090316 "positive
regulation of intracellular protein transport" evidence=ISO]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 MGI:MGI:1914060 GO:GO:0005634 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0000060 GO:GO:0090316 GO:GO:0071013
GO:GO:0017069 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
OMA:ILADKAC GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
CTD:55696 HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:AK018452 EMBL:AK045116
EMBL:AK150271 EMBL:AK151758 EMBL:AK152252 EMBL:AK166600
EMBL:AK167509 EMBL:AK168919 EMBL:BC080205 IPI:IPI00221951
RefSeq:NP_080052.1 UniGene:Mm.275106 ProteinModelPortal:Q8BHS3
SMR:Q8BHS3 STRING:Q8BHS3 PhosphoSite:Q8BHS3 PaxDb:Q8BHS3
PRIDE:Q8BHS3 Ensembl:ENSMUST00000025506 GeneID:66810 KEGG:mmu:66810
UCSC:uc008fal.1 InParanoid:Q8BHS3 ChiTaRS:RBM22 NextBio:322703
Bgee:Q8BHS3 CleanEx:MM_RBM22 Genevestigator:Q8BHS3
GermOnline:ENSMUSG00000024604 Uniprot:Q8BHS3
Length = 420
Score = 851 (304.6 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 164/282 (58%), Positives = 199/282 (70%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
TK Y KECKIC RPFTVFRW PG RFKKTE+CQTCSKLKNVCQ CLLDLEYGLP+QV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRRARA--GIDYESSYGKARP-SDTILKLQRTQ 119
RD LS D +PKSDVN+EY+ + +R G GKA SD +LKL RT
Sbjct: 97 RDAGLSFK--DDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTT 154
Query: 120 PYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKLL 177
PYYKRNR H+CSF+V+GEC RG ECPYRHE P + L+ QNIKDRYYG+NDPVA KLL
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLL 214
Query: 178 NKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTY 237
+A MP L+PPED++I TLYVGG+ ITE DLR++FY GEI +I + ++ AF+ +
Sbjct: 215 KRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQF 274
Query: 238 TTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSD 279
TR+ AE AAE+ NKL++ G RL + WG+ Q R + + D
Sbjct: 275 ATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKD 316
Score = 68 (29.0 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 323 PPPPQQDRA----YYPSMDPQRMGA 343
PPPP RA +YPS DPQRMGA
Sbjct: 389 PPPPFM-RAPGPIHYPSQDPQRMGA 412
>RGD|1305770 [details] [associations]
symbol:Rbm22 "RNA binding motif protein 22" species:10116
"Rattus norvegicus" [GO:0000060 "protein import into nucleus,
translocation" evidence=IEA;ISO] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017069 "snRNA binding"
evidence=ISO;ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISO;ISS] [GO:0033554 "cellular response to stress"
evidence=ISO;ISS] [GO:0036002 "pre-mRNA binding" evidence=ISO;ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO;ISS]
[GO:0048306 "calcium-dependent protein binding" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0090316 "positive regulation of intracellular protein
transport" evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
RGD:1305770 GO:GO:0005634 GO:GO:0005737 GO:GO:0033554 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0000060
GO:GO:0090316 GO:GO:0071013 GO:GO:0017069 eggNOG:NOG277760
HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 GO:GO:0005487 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:BC097991 IPI:IPI00194439
RefSeq:NP_001020847.1 UniGene:Rn.105130 ProteinModelPortal:Q4V7D7
SMR:Q4V7D7 STRING:Q4V7D7 PRIDE:Q4V7D7 Ensembl:ENSRNOT00000026087
GeneID:307410 KEGG:rno:307410 UCSC:RGD:1305770 InParanoid:Q4V7D7
NextBio:657353 Genevestigator:Q4V7D7 GermOnline:ENSRNOG00000019235
Uniprot:Q4V7D7
Length = 420
Score = 850 (304.3 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
Identities = 163/282 (57%), Positives = 199/282 (70%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
TK Y KECKIC RPFTVFRW PG RFKKTE+CQTCSKLKNVCQ CLLDLEYGLP+QV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRRARA--GIDYESSYGKARP-SDTILKLQRTQ 119
RD LS D +PKSDVN+EY+ + +R G GKA SD +LKL RT
Sbjct: 97 RDAGLSFK--DDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTT 154
Query: 120 PYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKLL 177
PYYKRNR H+CSF+V+GEC RG ECPYRHE P + L+ QNIKDRYYG+NDPVA KLL
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLL 214
Query: 178 NKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTY 237
+A MP L+PPED++I TLYVGG+ ITE DLR++FY GEI ++ + ++ AF+ +
Sbjct: 215 KRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTVTVVQRQQCAFIQF 274
Query: 238 TTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSD 279
TR+ AE AAE+ NKL++ G RL + WG+ Q R + + D
Sbjct: 275 ATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKD 316
Score = 68 (29.0 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 323 PPPPQQDRA----YYPSMDPQRMGA 343
PPPP RA +YPS DPQRMGA
Sbjct: 389 PPPPFM-RAPGPIHYPSQDPQRMGA 412
>ZFIN|ZDB-GENE-040426-2298 [details] [associations]
symbol:rbm22 "RNA binding motif protein 22"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0009790 "embryo development"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0017069
"snRNA binding" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 ZFIN:ZDB-GENE-040426-2298 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0009790 GO:GO:0017069 eggNOG:NOG277760
HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 HSSP:Q9H0Z9 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW EMBL:AY648794 EMBL:BC065892
IPI:IPI00487656 RefSeq:NP_998379.1 RefSeq:XP_003200934.1
UniGene:Dr.32898 ProteinModelPortal:Q6NZZ9 SMR:Q6NZZ9 STRING:Q6NZZ9
PRIDE:Q6NZZ9 Ensembl:ENSDART00000003983 Ensembl:ENSDART00000122126
GeneID:100536641 GeneID:406495 KEGG:dre:100536641 KEGG:dre:406495
GeneTree:ENSGT00390000002792 InParanoid:Q6NZZ9 NextBio:20818079
Bgee:Q6NZZ9 Uniprot:Q6NZZ9
Length = 425
Score = 852 (305.0 bits), Expect = 5.6e-90, Sum P(2) = 5.6e-90
Identities = 169/334 (50%), Positives = 216/334 (64%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
TK + KECKIC RPFTVFRW PG RFKKTE+CQTCSK+KNVCQ CLLDLEYGLP+QV
Sbjct: 37 TKEKFGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQV 96
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRR-ARA-GIDYESSYGKA-RPSDTILKLQRTQ 119
RDT LS+ D +P+SDVN+EY+ + +R A + G GKA SD +LKL RT
Sbjct: 97 RDTGLSVK--DEVPRSDVNKEYYTQNMEREIANSDGTRPVGLLGKAPSSSDMLLKLARTT 154
Query: 120 PYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKLL 177
PYYKRNR H+CSF+V+GEC RG ECPYRHE P + L+ QNIKDRYYG+NDPVA KLL
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVANKLL 214
Query: 178 NKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTY 237
+A MP L+ P+D+SI TLY+GG+ +T+ +LR++FY GEI +I + ++ AF+ +
Sbjct: 215 MRASTMPRLDVPDDKSITTLYIGGLGENVTDSELRNHFYQFGEIRTITIVQRQQCAFIQF 274
Query: 238 TTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGE----SSDEVRQQAAIAHSGML 293
TR+ AE AAE+ NKL+I G RL + WG+ Q R +GE + +R + G L
Sbjct: 275 ATRQAAETAAEKSFNKLIINGRRLNVKWGRSQAARGKGEKDGVTESGIRLEPVPGLPGAL 334
Query: 294 PRSLISXXXXXXXXXXXXXXXXXXXY-FNIPPPP 326
P +S +PPPP
Sbjct: 335 PPPPVSDEDASTNYFNLAPTPSPAVMNLGLPPPP 368
Score = 65 (27.9 bits), Expect = 5.6e-90, Sum P(2) = 5.6e-90
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 322 IPPPPQ---QDRAYYPSMDPQRMGA 343
+PPP + +YPS DPQRMGA
Sbjct: 393 VPPPMALRPPGQVHYPSQDPQRMGA 417
Score = 39 (18.8 bits), Expect = 3.1e-87, Sum P(2) = 3.1e-87
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 322 IPPPPQQDRAYYPSMDP 338
+PPPP + +MDP
Sbjct: 372 MPPPPGFGPPMFHTMDP 388
>UNIPROTKB|Q3B7L8 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9913
"Bos taurus" [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0017069 "snRNA binding" evidence=ISS] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=ISS] [GO:0090316
"positive regulation of intracellular protein transport"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0033554 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316
GO:GO:0017069 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
EMBL:BC107551 IPI:IPI00709529 RefSeq:NP_001032907.1
UniGene:Bt.28600 ProteinModelPortal:Q3B7L8 SMR:Q3B7L8 PRIDE:Q3B7L8
GeneID:512330 KEGG:bta:512330 CTD:55696 HOVERGEN:HBG083475
InParanoid:Q3B7L8 OrthoDB:EOG40S0FW NextBio:20870344 Uniprot:Q3B7L8
Length = 420
Score = 847 (303.2 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
Identities = 163/282 (57%), Positives = 198/282 (70%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
TK Y KECKIC RPFTVFRW PG RFKKTE+CQTCSKLKNVCQ CLLDLEYGLP+QV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRRARA--GIDYESSYGKARP-SDTILKLQRTQ 119
RD LS D +PKSDVN+EY+ + +R G GKA SD +LKL RT
Sbjct: 97 RDAGLSFK--DDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTT 154
Query: 120 PYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKLL 177
PYYKRNR H+CSF+V+GEC RG ECPYRHE P + L+ QNIKDRYYG+NDPVA KLL
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLL 214
Query: 178 NKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTY 237
+A MP L+PPED++I TLYVGG+ ITE DLR++FY GEI +I + ++ AF+ +
Sbjct: 215 KRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQF 274
Query: 238 TTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSD 279
TR+ AE AAE+ NK ++ G RL + WG+ Q R + + D
Sbjct: 275 ATRQAAEVAAEKSFNKFIVNGRRLNVKWGRSQAARGKEKEKD 316
Score = 68 (29.0 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 323 PPPPQQDRA----YYPSMDPQRMGA 343
PPPP RA +YPS DPQRMGA
Sbjct: 389 PPPPFM-RAPGPIHYPSQDPQRMGA 412
>UNIPROTKB|Q6P616 [details] [associations]
symbol:rbm22 "Pre-mRNA-splicing factor RBM22" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0017069 "snRNA binding"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
GO:GO:0007275 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0017069 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
OMA:RNRAHIC GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:CR761977 EMBL:BC062518
RefSeq:NP_989108.1 UniGene:Str.5987 ProteinModelPortal:Q6P616
SMR:Q6P616 STRING:Q6P616 Ensembl:ENSXETT00000044114 GeneID:394713
KEGG:xtr:394713 Xenbase:XB-GENE-971198 InParanoid:Q6P616
Bgee:Q6P616 Uniprot:Q6P616
Length = 417
Score = 851 (304.6 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
Identities = 170/334 (50%), Positives = 214/334 (64%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
TK Y KECKIC RPFTVFRW PG RFKKTE+CQTCSKLKNVCQ CLLDLEYGLP+QV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRR-ARA-GIDYESSYGKARPS-DTILKLQRTQ 119
RD S+ D +P+SDVN+EY+ + +R A + G + GKA S D +LKL RT
Sbjct: 97 RDAGASLK--DEMPRSDVNKEYYTQNMEREIANSDGTRPVGALGKATSSSDMLLKLARTT 154
Query: 120 PYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKLL 177
PYYKRNR H+CSF+V+GEC RG ECPYRHE P + L+ QNIKDRYYG+NDPVA KLL
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLL 214
Query: 178 NKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTY 237
+A MP L+PPED+SI TLYVGG+ I+E +LR++FY GEI +I + ++ AF+ +
Sbjct: 215 KRASTMPRLDPPEDKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQF 274
Query: 238 TTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRP-----EGESSDEVRQQAAIAHSGM 292
TR+ AE AAE+ NKL++ G RL + WG+ Q R +G S ++ + G
Sbjct: 275 ATRQAAEMAAEKSFNKLIVNGRRLNVKWGRSQAARGKERERDGSSDPGMKLEPVPGLPGA 334
Query: 293 LPRSLISXXXXXXXXXXXXXXXXXXXYFNIPPPP 326
LP ++PPPP
Sbjct: 335 LPPPPTEEESSANYFNLPPNGSAALVNISLPPPP 368
Score = 62 (26.9 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 324 PPP---QQDRAYYPSMDPQRMGA 343
PPP +YPS DPQRMGA
Sbjct: 387 PPPFLRAPGHIHYPSQDPQRMGA 409
Score = 41 (19.5 bits), Expect = 2.4e-87, Sum P(2) = 2.4e-87
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 322 IPPPPQQDR--AYYPSMDPQRMGAL 344
+PPPP ++ A Y ++ P AL
Sbjct: 335 LPPPPTEEESSANYFNLPPNGSAAL 359
>UNIPROTKB|Q7ZXB5 [details] [associations]
symbol:rbm22 "Pre-mRNA-splicing factor RBM22" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0017069 "snRNA binding" evidence=ISS]
[GO:0033120 "positive regulation of RNA splicing" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0017069
KO:K12872 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 CTD:55696
HOVERGEN:HBG083475 HSSP:Q6PHZ5 EMBL:BC045067 RefSeq:NP_001080776.1
UniGene:Xl.4959 ProteinModelPortal:Q7ZXB5 SMR:Q7ZXB5 GeneID:380469
KEGG:xla:380469 Xenbase:XB-GENE-971204 Uniprot:Q7ZXB5
Length = 417
Score = 849 (303.9 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
Identities = 169/334 (50%), Positives = 215/334 (64%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
TK Y KECKIC RPFTVFRW PG RFKKTE+CQTCSKLKNVCQ CLLDLEYGLP+QV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRR-ARA-GIDYESSYGKARPS-DTILKLQRTQ 119
RDT +S+ D +P+SDVN+EY+ + +R A + G + GKA S D +LKL RT
Sbjct: 97 RDTGVSLK--DEMPRSDVNKEYYTQNMEREIANSDGTRPVGALGKATSSSDMLLKLARTT 154
Query: 120 PYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKLL 177
PYYKRNR H+CSF+V+GEC RG ECPYRHE P + L+ QNIKDR+YG+NDPVA KLL
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRFYGINDPVADKLL 214
Query: 178 NKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTY 237
+A MP L+PPED+SI TLYVGG+ I+E +LR++FY GEI +I + ++ AF+ +
Sbjct: 215 KRASTMPRLDPPEDKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQF 274
Query: 238 TTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRP-----EGESSDEVRQQAAIAHSGM 292
TR+ AE AAE+ NKL++ G RL + WG+ Q R +G ++ + G
Sbjct: 275 ATRQSAETAAEKSFNKLIVNGRRLNVKWGRSQAARGKEREHDGSGDPGMKFEPVPGLPGA 334
Query: 293 LPRSLISXXXXXXXXXXXXXXXXXXXYFNIPPPP 326
LP ++PPPP
Sbjct: 335 LPPPPTEEESSANYFNLPPNGSAALVNISLPPPP 368
Score = 62 (26.9 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 324 PPP---QQDRAYYPSMDPQRMGA 343
PPP +YPS DPQRMGA
Sbjct: 387 PPPFLRAPGHIHYPSQDPQRMGA 409
Score = 41 (19.5 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 322 IPPPPQQDR--AYYPSMDPQRMGAL 344
+PPPP ++ A Y ++ P AL
Sbjct: 335 LPPPPTEEESSANYFNLPPNGSAAL 359
>UNIPROTKB|E2RG35 [details] [associations]
symbol:RBM22 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0090316 "positive regulation of intracellular
protein transport" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048306 "calcium-dependent protein
binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0033554 "cellular response to stress"
evidence=IEA] [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=IEA] [GO:0000060 "protein import
into nucleus, translocation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005737 GO:GO:0033554
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0000060 GO:GO:0090316 GO:GO:0071013 GO:GO:0017069 OMA:ILADKAC
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
GeneTree:ENSGT00390000002792 EMBL:AAEX03003093
ProteinModelPortal:E2RG35 Ensembl:ENSCAFT00000028740 Uniprot:E2RG35
Length = 422
Score = 840 (300.8 bits), Expect = 5.0e-89, Sum P(2) = 5.0e-89
Identities = 164/284 (57%), Positives = 199/284 (70%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGL--PV 60
TK Y KECKIC RPFTVFRW PG RFKKTE+CQTCSKLKNVCQ CLLDLEYGL P+
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLGLPI 96
Query: 61 QVRDTALSINSNDAIPKSDVNREYFAEEHDRRARA--GIDYESSYGKARP-SDTILKLQR 117
QVRD LS D +PKSDVN+EY+ + +R G GKA SD +LKL R
Sbjct: 97 QVRDAGLSFK--DDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLAR 154
Query: 118 TQPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALK 175
T PYYKRNR H+CSF+V+GEC RG ECPYRHE P + L+ QNIKDRYYG+NDPVA K
Sbjct: 155 TTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADK 214
Query: 176 LLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFV 235
LL +A MP L+PPED++I TLYVGG+ ITE DLR++FY GEI +I + ++ AF+
Sbjct: 215 LLKRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFI 274
Query: 236 TYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSD 279
+ TR+ AE AAE+ NKL++ G RL + WG+ Q R + + D
Sbjct: 275 QFATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKD 318
Score = 68 (29.0 bits), Expect = 5.0e-89, Sum P(2) = 5.0e-89
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 323 PPPPQQDRA----YYPSMDPQRMGA 343
PPPP RA +YPS DPQRMGA
Sbjct: 391 PPPPFM-RAPGPIHYPSQDPQRMGA 414
>UNIPROTKB|I3LKW5 [details] [associations]
symbol:RBM22 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0090316 "positive regulation of intracellular protein
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0036002 "pre-mRNA binding" evidence=IEA]
[GO:0033554 "cellular response to stress" evidence=IEA] [GO:0033120
"positive regulation of RNA splicing" evidence=IEA] [GO:0017069
"snRNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005487 "nucleocytoplasmic transporter activity" evidence=IEA]
[GO:0000060 "protein import into nucleus, translocation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0000060 GO:GO:0090316 GO:GO:0071013
GO:GO:0017069 OMA:ILADKAC GO:GO:0045292 GO:GO:0036002 GO:GO:0033120
GO:GO:0005487 GeneTree:ENSGT00390000002792
Ensembl:ENSSSCT00000022932 Uniprot:I3LKW5
Length = 402
Score = 827 (296.2 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 159/282 (56%), Positives = 197/282 (69%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
TK Y KECKIC RPFTVFRW PG RFKKTE+CQTCSKLKNVCQ CLLDLEYGLP+QV
Sbjct: 19 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 78
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRRARA--GIDYESSYGKARP-SDTILKLQRTQ 119
RD LS D +PKSDVN+EY+ + +R G GKA SD +LKL RT
Sbjct: 79 RDAGLSFK--DDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTT 136
Query: 120 PYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKLL 177
PYYKRNR H+CSF+V+GEC RG ECPYRHE P + L+ QNIKDRYYG+NDPVA KLL
Sbjct: 137 PYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLL 196
Query: 178 NKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTY 237
+A MP L+PPED++I TLYVGG+ E++L ++FY GEI ++ + ++ AF+ +
Sbjct: 197 KRASTMPRLDPPEDKTITTLYVGGLGRDGVEKNLPNHFYQFGEIRTVTVVQRQQCAFIQF 256
Query: 238 TTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSD 279
TR+ AE AAE+ NKL++ G RL + WG+ Q R + + D
Sbjct: 257 ATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKD 298
Score = 68 (29.0 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 323 PPPPQQDRA----YYPSMDPQRMGA 343
PPPP RA +YPS DPQRMGA
Sbjct: 371 PPPPFM-RAPGPIHYPSQDPQRMGA 394
>FB|FBgn0037220 [details] [associations]
symbol:CG14641 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IC] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 eggNOG:NOG277760
KO:K12872 GO:GO:0000381 HSSP:P33240 GeneTree:ENSGT00390000002792
OMA:CAFVQYT EMBL:AY061516 RefSeq:NP_649440.3 UniGene:Dm.3575
SMR:Q95RB1 IntAct:Q95RB1 MINT:MINT-289131 STRING:Q95RB1
EnsemblMetazoa:FBtr0078985 GeneID:40529 KEGG:dme:Dmel_CG14641
UCSC:CG14641-RA FlyBase:FBgn0037220 InParanoid:Q95RB1
OrthoDB:EOG4N5TC7 GenomeRNAi:40529 NextBio:819204 Uniprot:Q95RB1
Length = 418
Score = 817 (292.7 bits), Expect = 2.1e-86, Sum P(2) = 2.1e-86
Identities = 155/281 (55%), Positives = 199/281 (70%)
Query: 4 KADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVR 63
K + KECKICTRPFT+FRW PG RFKKTEICQTC++LKNVCQ CLLDLEYGLP+QVR
Sbjct: 38 KERFGKECKICTRPFTIFRWCPGARMRFKKTEICQTCARLKNVCQTCLLDLEYGLPIQVR 97
Query: 64 DTALSINSNDAIPKSDVNREYFAEEHDRRARAGIDYESS--YGKARPSDTIL-KLQRTQP 120
D AL + N +P+SDVN+EY+ + D + + G E++ G++ ++ +L KL RT P
Sbjct: 98 DAALKVADN--MPQSDVNKEYYIQNIDAQLQDGDGTEAAGAVGRSLAANEMLSKLARTAP 155
Query: 121 YYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKLLN 178
YYKRNR H+CSF+V+GEC RG ECPYRH+ P + L +QNIKDRYYG NDPVA K++
Sbjct: 156 YYKRNRPHICSFWVKGECKRGEECPYRHDKPNEPDDPLCEQNIKDRYYGRNDPVAEKIMK 215
Query: 179 KAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYT 238
+A +P+LEPPED +I TLYVG + ITE +LRD FY GEI SI + P++ AFV YT
Sbjct: 216 RAASLPTLEPPEDRNITTLYVGNLPEEITEPELRDQFYQFGEIRSIALVPRQQCAFVQYT 275
Query: 239 TREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSD 279
R AE AAE NKLVI+G ++ + W Q ++ +D
Sbjct: 276 KRNAAELAAERTFNKLVIQGRKVSIKWAHSQAKQGTAAKTD 316
Score = 66 (28.3 bits), Expect = 2.1e-86, Sum P(2) = 2.1e-86
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 321 NIPPPPQQDRAYYPSMDPQRMGAL 344
+IPPPP Q YPS D RMGA+
Sbjct: 395 SIPPPPGQ--VPYPSQDASRMGAV 416
>WB|WBGene00011722 [details] [associations]
symbol:T11G6.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0042127 "regulation of
cell proliferation" evidence=IMP] [GO:0040020 "regulation of
meiosis" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 GO:GO:0046872 GO:GO:0018996
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723
GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 GO:GO:0040020
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
GeneTree:ENSGT00390000002792 EMBL:Z69384 PIR:T24851
RefSeq:NP_502014.2 ProteinModelPortal:Q22412 SMR:Q22412
STRING:Q22412 PaxDb:Q22412 EnsemblMetazoa:T11G6.8.1
EnsemblMetazoa:T11G6.8.2 GeneID:177979 KEGG:cel:CELE_T11G6.8
UCSC:T11G6.8.1 CTD:177979 WormBase:T11G6.8 InParanoid:Q22412
OMA:CAFVQYT NextBio:899214 Uniprot:Q22412
Length = 408
Score = 775 (277.9 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
Identities = 147/286 (51%), Positives = 192/286 (67%)
Query: 4 KADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVR 63
K Y +ECKIC RPFT FRW+PG+ AR+K TE+CQTC+K+KNVCQ C+ DLEYGLPVQVR
Sbjct: 39 KDKYGRECKICERPFTTFRWQPGKGARYKNTELCQTCAKVKNVCQTCMFDLEYGLPVQVR 98
Query: 64 DTALSINSNDAIPKSDVNREYFAEEHDRRARAG-----IDYESSYGKARPSDTILKLQRT 118
D L I N IPK NR++F + +R G I ++ D + ++ RT
Sbjct: 99 DHELQIADN--IPKQGANRDFFLQNVERTLGQGDGTQPIAQIANNMDQAAHDRLRRMGRT 156
Query: 119 QPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKL 176
QPYYKRN H+CSF+V+GEC RG ECPYRHE P + LS+QNI+DRYYG NDPVA K+
Sbjct: 157 QPYYKRNAPHICSFFVKGECKRGEECPYRHEKPTDPDDPLSRQNIRDRYYGTNDPVAEKI 216
Query: 177 LNKAGEMPSLEPPEDESIKTLYVGGVDA----RITEQDLRDNFYAHGEIESIKMHPQKAF 232
LN+A P+L PP D +I TLY+G + ++TE+DL D FY +G+I +++ +K
Sbjct: 217 LNRAAAAPTLSPPADTTITTLYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVLTEKGC 276
Query: 233 AFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESS 278
AF+ +TTRE AE+AAE NK IKG RL + WG+PQ +R S+
Sbjct: 277 AFIEFTTREAAERAAERSFNKTFIKGKRLTIRWGEPQAKRAADNSN 322
Score = 54 (24.1 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 332 YYPSMDPQRMGA 343
YYPS DP R+GA
Sbjct: 391 YYPSQDPTRLGA 402
>UNIPROTKB|F5GWK3 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC008453
IPI:IPI00909290 HGNC:HGNC:25503 ProteinModelPortal:F5GWK3
SMR:F5GWK3 Ensembl:ENST00000540000 ArrayExpress:F5GWK3 Bgee:F5GWK3
Uniprot:F5GWK3
Length = 371
Score = 611 (220.1 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
Identities = 125/249 (50%), Positives = 163/249 (65%)
Query: 36 ICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAEEHDRRARA 95
+CQTC L + + + GLP+QVRD LS D +PKSDVN+EY+ + +R
Sbjct: 23 LCQTC--LGENPYIRMEREKSGLPIQVRDAGLSFK--DDMPKSDVNKEYYTQNMEREISN 78
Query: 96 --GIDYESSYGKARP-SDTILKLQRTQPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPV 152
G GKA SD +LKL RT PYYKRNR H+CSF+V+GEC RG ECPYRHE P
Sbjct: 79 SDGTRPVGMLGKATSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPT 138
Query: 153 TGE--LSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQD 210
+ L+ QNIKDRYYG+NDPVA KLL +A MP L+PPED++I TLYVGG+ ITE D
Sbjct: 139 DPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPEDKTITTLYVGGLGDTITETD 198
Query: 211 LRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQT 270
LR++FY GEI +I + ++ AF+ + TR+ AE AAE+ NKL++ G RL + WG+ Q
Sbjct: 199 LRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQA 258
Query: 271 QRPEGESSD 279
R + + D
Sbjct: 259 ARGKEKEKD 267
Score = 68 (29.0 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 323 PPPPQQDRA----YYPSMDPQRMGA 343
PPPP RA +YPS DPQRMGA
Sbjct: 340 PPPPFM-RAPGPIHYPSQDPQRMGA 363
>DICTYBASE|DDB_G0290649 [details] [associations]
symbol:DDB_G0290649 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 dictyBase:DDB_G0290649 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AAFI02000164 eggNOG:NOG277760 KO:K12872 RefSeq:XP_635624.2
ProteinModelPortal:Q54FZ3 EnsemblProtists:DDB0233459 GeneID:8627696
KEGG:ddi:DDB_G0290649 OMA:NIENTEE Uniprot:Q54FZ3
Length = 407
Score = 520 (188.1 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 115/288 (39%), Positives = 163/288 (56%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
T++++DKECKICTRP+ V+RW+PG +R+K+TEIC+TCS++KNVCQ C+ DLE+GLPVQV
Sbjct: 37 TRSEFDKECKICTRPYNVYRWKPGSSSRYKRTEICKTCSQVKNVCQACIHDLEFGLPVQV 96
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKARPSDTILKLQRTQPYY 122
RD AL+ N + +D EY A E+ R G+ SY +PSD + KL +T P
Sbjct: 97 RDAALAANQFENSYVTDKGIEYQATENQRLIDNGL---ISYDNFQPSDIVTKLAKTIPKS 153
Query: 123 KRNRAH----------------VCSFYVRGECTRGAECPYRHEMPVTGELSQQNIKDRYY 166
N + +CSF+ +G C RG ECPYRH++ S IKD
Sbjct: 154 NFNNSSNNNNNNNNKNDSNAPKICSFFQKGNCNRGDECPYRHDL----NSSNTEIKD--- 206
Query: 167 GVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDA-RITEQDLRDNFYAHGEIESIK 225
GVN K + + P D+SI TL++G ++ +ITE +++N + G I+ +K
Sbjct: 207 GVN---------KIQQQKPPKKPIDQSITTLFLGNLEFDKITEDHIKNNLFVFGNIKKVK 257
Query: 226 MHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRP 273
+ + AFVT+ TRE AE A + L N I +KL W K P
Sbjct: 258 LIEHQKCAFVTFETRESAESAIDSLFNNFKIDNCEIKLNWSKSNKPPP 305
Score = 43 (20.2 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 329 DRAYYPSMDPQRMGA 343
++ YY SMDP G+
Sbjct: 389 NKPYYSSMDPSNYGS 403
>UNIPROTKB|E5RJW4 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 GO:GO:0005634
GO:GO:0008270 GO:GO:0003676 EMBL:AC008453 HGNC:HGNC:25503
IPI:IPI00979459 ProteinModelPortal:E5RJW4 SMR:E5RJW4
Ensembl:ENST00000518917 ArrayExpress:E5RJW4 Bgee:E5RJW4
Uniprot:E5RJW4
Length = 179
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 99/152 (65%), Positives = 110/152 (72%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
TK Y KECKIC RPFTVFRW PG RFKKTE+CQTCSKLKNVCQ CLLDLEYGLP+QV
Sbjct: 30 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 89
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRRARA--GIDYESSYGKARP-SDTILKLQRTQ 119
RD LS D +PKSDVN+EY+ + +R G GKA SD +LKL RT
Sbjct: 90 RDAGLSFK--DDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTT 147
Query: 120 PYYKRNRAHVCSFYVRGECTRGAECPYRHEMP 151
PYYKRNR H+CSF+V+GEC RG ECPYRHE P
Sbjct: 148 PYYKRNRPHICSFWVKGECKRGEECPYRHEKP 179
>GENEDB_PFALCIPARUM|PFL2310w [details] [associations]
symbol:PFL2310w "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:AE014188 eggNOG:NOG277760
HOGENOM:HOG000171086 KO:K12872 RefSeq:XP_001350866.1
ProteinModelPortal:Q8I4V2 EnsemblProtists:PFL2310w:mRNA
GeneID:811514 KEGG:pfa:PFL2310w EuPathDB:PlasmoDB:PF3D7_1248200
OMA:REFFAQN ProtClustDB:CLSZ2432105 Uniprot:Q8I4V2
Length = 357
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 105/256 (41%), Positives = 163/256 (63%)
Query: 9 KECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALS 68
KECKIC FT FRW+PG ++R+K+T IC C+K+KNVCQ CL DL+Y LPVQVRD L
Sbjct: 45 KECKICKNVFTHFRWKPGENSRYKQTVICMKCAKVKNVCQTCLFDLQYNLPVQVRDKFLE 104
Query: 69 INSNDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKA-RPSDTILKLQRTQPYYKRNRA 127
NS +P+++ NR +F E+ + D S+Y K R + + KL+R PY+KRN A
Sbjct: 105 -NSI-VLPENETNRNFFLEQMEN------DMSSTYDKMNRINMDLSKLKRRDPYFKRNMA 156
Query: 128 HVCSFYVRGECTRGAECPYRH-EMPVTGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSL 186
VCSF+ + C RG ECPY H E+ + LS QNIK+RY G ND +A K+L K E +
Sbjct: 157 RVCSFWRKNSCNRGDECPYLHKEIHLDKSLSNQNIKNRYTGENDILAEKILLKHNEKNN- 215
Query: 187 EPPEDESIKT-LYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEK 245
+D+++ + + G+ +++ ++++ F G+I+SIK+ P+ + F++Y+ + A+K
Sbjct: 216 ---DDKNMSNKICIQGISESVSQANIKECFKKFGDIKSIKVIPKDSKMFISYSNSQAAKK 272
Query: 246 AAEELSNKLVIKGLRL 261
A+++ + L++ G L
Sbjct: 273 ASDKYKDGLLLNGCNL 288
>UNIPROTKB|Q8I4V2 [details] [associations]
symbol:PFL2310w "Pre-mRNA-splicing factor PFL2310w"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:AE014188 eggNOG:NOG277760 HOGENOM:HOG000171086
KO:K12872 RefSeq:XP_001350866.1 ProteinModelPortal:Q8I4V2
EnsemblProtists:PFL2310w:mRNA GeneID:811514 KEGG:pfa:PFL2310w
EuPathDB:PlasmoDB:PF3D7_1248200 OMA:REFFAQN ProtClustDB:CLSZ2432105
Uniprot:Q8I4V2
Length = 357
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 105/256 (41%), Positives = 163/256 (63%)
Query: 9 KECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALS 68
KECKIC FT FRW+PG ++R+K+T IC C+K+KNVCQ CL DL+Y LPVQVRD L
Sbjct: 45 KECKICKNVFTHFRWKPGENSRYKQTVICMKCAKVKNVCQTCLFDLQYNLPVQVRDKFLE 104
Query: 69 INSNDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKA-RPSDTILKLQRTQPYYKRNRA 127
NS +P+++ NR +F E+ + D S+Y K R + + KL+R PY+KRN A
Sbjct: 105 -NSI-VLPENETNRNFFLEQMEN------DMSSTYDKMNRINMDLSKLKRRDPYFKRNMA 156
Query: 128 HVCSFYVRGECTRGAECPYRH-EMPVTGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSL 186
VCSF+ + C RG ECPY H E+ + LS QNIK+RY G ND +A K+L K E +
Sbjct: 157 RVCSFWRKNSCNRGDECPYLHKEIHLDKSLSNQNIKNRYTGENDILAEKILLKHNEKNN- 215
Query: 187 EPPEDESIKT-LYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEK 245
+D+++ + + G+ +++ ++++ F G+I+SIK+ P+ + F++Y+ + A+K
Sbjct: 216 ---DDKNMSNKICIQGISESVSQANIKECFKKFGDIKSIKVIPKDSKMFISYSNSQAAKK 272
Query: 246 AAEELSNKLVIKGLRL 261
A+++ + L++ G L
Sbjct: 273 ASDKYKDGLLLNGCNL 288
>UNIPROTKB|Q2KH70 [details] [associations]
symbol:MGCH7_ch7g115 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM000230 ProteinModelPortal:Q2KH70
Uniprot:Q2KH70
Length = 366
Score = 300 (110.7 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 58/128 (45%), Positives = 88/128 (68%)
Query: 4 KADYDKECKICTRPFTVFRWRPGR-DARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
K DY ECK+CTRPFTVF W R R K+T IC TC++LKN CQ C+LDL +GLP+ V
Sbjct: 3 KEDYGAECKLCTRPFTVFSWSADRAHGRKKRTNICLTCARLKNCCQGCMLDLSFGLPIVV 62
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRR---ARAGID-YESSYGKARPSDTILKLQRT 118
RD AL + + P+S++NRE+FA+ +++ +AG++ YE + KAR + + +L ++
Sbjct: 63 RDAALKMVAPG--PQSEINREFFAQNNEKAIEDGKAGVEEYEKTDDKAR--ELLRRLAQS 118
Query: 119 QPYYKRNR 126
+PY+++ R
Sbjct: 119 KPYFRKGR 126
Score = 176 (67.0 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 37/94 (39%), Positives = 56/94 (59%)
Query: 180 AGEMPSLE----PPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFV 235
A ++P E PP+D+++ +L+V GV+ + E +RD+F G+I+S+ AFV
Sbjct: 195 AAQLPPTEKDWLPPDDKTVTSLFVTGVEDDLPEHKVRDHFKTFGKIKSLVCSHMSHCAFV 254
Query: 236 TYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269
Y TRE AE AA E + VI G L++ WGKP+
Sbjct: 255 NYETREAAENAAMECKGRAVIAGCPLRVHWGKPK 288
>ASPGD|ASPL0000064523 [details] [associations]
symbol:AN7145 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:BN001304
EMBL:AACD01000122 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
RefSeq:XP_664749.1 ProteinModelPortal:Q5AX35 GeneID:2870109
KEGG:ani:AN7145.2 OMA:DLNRSGW OrthoDB:EOG47H908 Uniprot:Q5AX35
Length = 377
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 102/281 (36%), Positives = 153/281 (54%)
Query: 4 KADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVR 63
K DY ECKICTRPFT+FRW+ R AR K+T IC TC++LKN CQ C+LDL +GLP+ VR
Sbjct: 37 KEDYGAECKICTRPFTIFRWKADRTARTKRTNICLTCARLKNCCQCCMLDLSFGLPIVVR 96
Query: 64 DTALSINSNDAIPKSDVNREYFAEEHDRRARAGI----DYESSYGKARPSDTILKLQRTQ 119
D AL + + P+S +NREY+A+ H++ G +YE + KAR + + +L ++
Sbjct: 97 DAALKMVAPG--PQSSINREYYAQGHEKEIEEGRGAVEEYEKTDEKAR--ELLRRLANSE 152
Query: 120 PYYKRNRAHVCSFYVRGECTRG------AECPYRHEM-PVTGELSQQNIKDRYYGVNDPV 172
PYY++ R + + GE T+G Y + PV S++ G
Sbjct: 153 PYYRKPR-QLEAPEEDGE-TQGPSDATVVRSRYGNGPGPVRTSESRRGTPLPGRGRGGVR 210
Query: 173 ALKLLNKAGEMPSLE----PPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHP 228
+ ++P + PP D +I +L+V GV+ + E LR F G++ S+
Sbjct: 211 GGRPFPGTAQLPPSQADILPPADPNITSLFVTGVEDDLPEHALRSFFVQFGQLRSLVCSH 270
Query: 229 QKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269
+ AF+ Y RE AE AA+ K V++G L++ WGKP+
Sbjct: 271 RAHCAFINYAARESAEAAAKHCQGKAVVQGCPLRVRWGKPK 311
>POMBASE|SPCC550.02c [details] [associations]
symbol:cwf5 "RNA-binding protein Cwf5" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IC] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 PomBase:SPCC550.02c EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:NOG277760 HOGENOM:HOG000171086
KO:K12872 GO:GO:0045292 OMA:REFFAQN OrthoDB:EOG47H908 EMBL:AF254352
EMBL:AB027880 PIR:T41377 RefSeq:NP_588094.1
ProteinModelPortal:O59800 IntAct:O59800 STRING:O59800 PRIDE:O59800
EnsemblFungi:SPCC550.02c.1 GeneID:2538974 KEGG:spo:SPCC550.02c
NextBio:20800149 Uniprot:O59800
Length = 354
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 93/280 (33%), Positives = 151/280 (53%)
Query: 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQV 62
TK +ECKIC++P T+FRW R + KT+IC C++ KN CQ C+LDL++GLP+ +
Sbjct: 36 TKEPLGQECKICSKPCTIFRWIKERGQKPGKTQICVGCARYKNCCQSCMLDLQFGLPIAL 95
Query: 63 RDTALSINSNDAIPKSDVNREYFAEEHDRRARAG-IDYESSYGKARPSDTILKLQRTQPY 121
RD AL + + P +D+NRE+FA+ R G Y+S A + + K+++ + +
Sbjct: 96 RDAALKLVESG--PTNDINREFFAQNQQRLLSNGETAYDSQEASAAARNLVKKVEKRELH 153
Query: 122 Y---KRNRAHVCSFYVRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLN 178
KR V S + E R ++ E P+ + I +N V+L +
Sbjct: 154 SRPPKRKLDDVESKQILKEA-RASDASLNAERPL---FPVKKI------INGNVSLSI-- 201
Query: 179 KAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYT 238
++EPP+D+ I +L++ GV+ + + +R +F +G ++S+ + AFV +
Sbjct: 202 ------NMEPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVCSHRAKCAFVNFK 255
Query: 239 TREGAE-KAAEELSNKLVIKGLRLKLMWGKPQTQR-PEGE 276
TR AE AA +VI+G RLK+ WGKP++ PEGE
Sbjct: 256 TRSSAEIAAAASPDGNVVIEGFRLKVQWGKPRSLGGPEGE 295
>TAIR|locus:2146668 [details] [associations]
symbol:AT5G04210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL391716
eggNOG:NOG277760 KO:K12872 UniGene:At.27184 IPI:IPI00523206
RefSeq:NP_196041.1 UniGene:At.50700 ProteinModelPortal:Q9FYE0
SMR:Q9FYE0 EnsemblPlants:AT5G04210.1 GeneID:830300
KEGG:ath:AT5G04210 TAIR:At5g04210 InParanoid:Q9FYE0
PhylomeDB:Q9FYE0 Genevestigator:Q9FYE0 Uniprot:Q9FYE0
Length = 193
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 62/143 (43%), Positives = 90/143 (62%)
Query: 129 VCSFYVRG-ECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLE 187
+C + G +CTRG C YRHE+ + ++ G+ +P L++L +A L+
Sbjct: 16 ICPLFDAGRQCTRGTMCLYRHEINRGLDCHGRS------GLENPFVLEVLARACNTGPLK 69
Query: 188 PPEDESIKTLYVGG-VDARITEQDLRDNFYAHGEIESIKMHPQKA---FAFVTYTTREGA 243
PPED+SIKTLY+ +++ + EQD+RD+F +GEIESI + P + AF+TYTTR A
Sbjct: 70 PPEDQSIKTLYIRRLINSSVLEQDIRDHFCPYGEIESIVIFPHRGGGTCAFLTYTTRLAA 129
Query: 244 EKAAEELSNKLVIKGLRLKLMWG 266
EKA ELS+ IKG R+KL+WG
Sbjct: 130 EKAMLELSSWTDIKGQRVKLLWG 152
>CGD|CAL0004353 [details] [associations]
symbol:orf19.5364 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR012677 CGD:CAL0004353
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:AACQ01000059 EMBL:AACQ01000058
eggNOG:NOG277760 KO:K12872 RefSeq:XP_717087.1 RefSeq:XP_717166.1
ProteinModelPortal:Q5A5N5 GeneID:3641243 GeneID:3641296
KEGG:cal:CaO19.12824 KEGG:cal:CaO19.5364 Uniprot:Q5A5N5
Length = 303
Score = 189 (71.6 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
Identities = 37/84 (44%), Positives = 53/84 (63%)
Query: 10 ECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSI 69
EC+ CTRP+T++RW G + KT IC TC++ ++ CQ CLLD+ YG+P +RDTAL +
Sbjct: 29 ECRQCTRPYTIYRW--GNRKQGNKTIICITCARARHCCQSCLLDITYGIPTDLRDTALEM 86
Query: 70 NSNDAIPKS--DVNREYFAEEHDR 91
+ + KS NRE A D+
Sbjct: 87 AGLEPLTKSANPTNREVKAIMADK 110
Score = 42 (19.8 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
Identities = 25/126 (19%), Positives = 56/126 (44%)
Query: 172 VALKLLNKAGEMP---SLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHP 228
VA+ + A ++P SL+ + + T +V G + + +G++ES+
Sbjct: 143 VAIDVAKLAKKLPFGNSLDVQKYPDMTTFFVFGFSSDFPQAIFSRYAEQYGKVESVVFSS 202
Query: 229 QKAFAFVTY---TTREG-AEKAAEELSNK-------LVIKGLRLKLMWGKPQTQRPEGES 277
F+ + ++ G A+ AE NK L+++ +++ +GK Q+P +
Sbjct: 203 VSGCGFIRFEKVSSAVGFAKSIAENGLNKNKSIAGLLILENTPMRVCFGK---QKPLPRT 259
Query: 278 SDEVRQ 283
+ + R+
Sbjct: 260 AADQRK 265
>CGD|CAL0001095 [details] [associations]
symbol:orf19.674 species:5476 "Candida albicans" [GO:0071007
"U2-type catalytic step 2 spliceosome" evidence=IEA] [GO:0071006
"U2-type catalytic step 1 spliceosome" evidence=IEA] [GO:0000974
"Prp19 complex" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0000387 "spliceosomal snRNP
assembly" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360 CGD:CAL0001095
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0007049 GO:GO:0000387 GO:GO:0045787
GO:GO:0045292 GO:GO:0000974 eggNOG:NOG288665 GO:GO:0036002
GO:GO:0017070 GO:GO:0033120 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713807.1 RefSeq:XP_713847.1 ProteinModelPortal:Q59W50
STRING:Q59W50 GeneID:3644493 GeneID:3644554 KEGG:cal:CaO19.674
KEGG:cal:CaO19.8291 Uniprot:Q59W50
Length = 363
Score = 170 (64.9 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 50/176 (28%), Positives = 87/176 (49%)
Query: 113 LKLQRTQPYYKRNR-AHVCSFYVRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDP 171
+++ Q + K N+ H+C F+ RG C G++C Y H +P + + + +D +G D
Sbjct: 66 VRISTDQGFTKANKNTHICLFFSRGCCYLGSKCQYFHRLPKESD-NFKPTQD-CFG-RDK 122
Query: 172 VALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARI-TEQDLRDNFYAHGEIESIKMHPQK 230
A N +M + + TLYVGG+ + TEQ L NF G +E +++ K
Sbjct: 123 TA----NYRDDMDGVGSLNKVNC-TLYVGGIHIKPNTEQLLVKNFQEFGTVEKVRVLQGK 177
Query: 231 AFAFVTYTTREGAEKAAEELSNKLVIKGLR--LKLMWGKPQTQRPEGESSDEVRQQ 284
AFVT T A+ A E + ++ +++G L + W + + P + ++ RQQ
Sbjct: 178 GCAFVTMKTENQAQFAKEAMQSQSLVEGSNEVLYVRWAN-EDKNPAAQKQEKKRQQ 232
>UNIPROTKB|Q59W50 [details] [associations]
symbol:CWC2 "Pre-mRNA-splicing factor CWC2" species:237561
"Candida albicans SC5314" [GO:0000387 "spliceosomal snRNP assembly"
evidence=ISS] [GO:0000974 "Prp19 complex" evidence=ISS] [GO:0017070
"U6 snRNA binding" evidence=ISS] [GO:0033120 "positive regulation
of RNA splicing" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0045787 "positive regulation of cell cycle"
evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
CGD:CAL0001095 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0007049 GO:GO:0000387
GO:GO:0045787 GO:GO:0045292 GO:GO:0000974 eggNOG:NOG288665
GO:GO:0036002 GO:GO:0017070 GO:GO:0033120 EMBL:AACQ01000117
EMBL:AACQ01000116 RefSeq:XP_713807.1 RefSeq:XP_713847.1
ProteinModelPortal:Q59W50 STRING:Q59W50 GeneID:3644493
GeneID:3644554 KEGG:cal:CaO19.674 KEGG:cal:CaO19.8291
Uniprot:Q59W50
Length = 363
Score = 170 (64.9 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 50/176 (28%), Positives = 87/176 (49%)
Query: 113 LKLQRTQPYYKRNR-AHVCSFYVRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDP 171
+++ Q + K N+ H+C F+ RG C G++C Y H +P + + + +D +G D
Sbjct: 66 VRISTDQGFTKANKNTHICLFFSRGCCYLGSKCQYFHRLPKESD-NFKPTQD-CFG-RDK 122
Query: 172 VALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARI-TEQDLRDNFYAHGEIESIKMHPQK 230
A N +M + + TLYVGG+ + TEQ L NF G +E +++ K
Sbjct: 123 TA----NYRDDMDGVGSLNKVNC-TLYVGGIHIKPNTEQLLVKNFQEFGTVEKVRVLQGK 177
Query: 231 AFAFVTYTTREGAEKAAEELSNKLVIKGLR--LKLMWGKPQTQRPEGESSDEVRQQ 284
AFVT T A+ A E + ++ +++G L + W + + P + ++ RQQ
Sbjct: 178 GCAFVTMKTENQAQFAKEAMQSQSLVEGSNEVLYVRWAN-EDKNPAAQKQEKKRQQ 232
>SGD|S000000269 [details] [associations]
symbol:ECM2 "Pre-mRNA splicing factor" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IGI] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] SGD:S000000269 GO:GO:0005634 GO:GO:0005681
EMBL:BK006936 KO:K16261 GO:GO:0003723 GO:GO:0000398
RefSeq:NP_009624.4 GeneID:852360 KEGG:sce:YBR068C eggNOG:NOG277760
KO:K12872 EMBL:Z35935 GeneTree:ENSGT00390000002792
OrthoDB:EOG47H908 EMBL:Z35934 PIR:S45925 RefSeq:NP_009621.3
ProteinModelPortal:P38241 DIP:DIP-5359N IntAct:P38241
MINT:MINT-570568 STRING:P38241 PaxDb:P38241 EnsemblFungi:YBR065C
GeneID:852357 KEGG:sce:YBR065C CYGD:YBR065c HOGENOM:HOG000154338
OMA:KAIMADK NextBio:971116 Genevestigator:P38241 GermOnline:YBR065C
Uniprot:P38241
Length = 364
Score = 162 (62.1 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 34/105 (32%), Positives = 59/105 (56%)
Query: 3 TKADYDKECKICTRPFTVFRWRPG-RDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQ 61
TK ECKICT PFT++ ++ R KT IC C+ +N+CQ C+LD + +P+Q
Sbjct: 26 TKIPQGSECKICTLPFTLYHFKTSKRSNNIIKTLICVRCATQRNICQCCMLDSRWHIPIQ 85
Query: 62 VRDTALS-INSNDAIP---KSDVNREYFAEEHDRRARAGIDYESS 102
+RD +S +N + + K+D+ + + + ++ + A I + S
Sbjct: 86 LRDHLISLVNEENVMTEEAKNDMMKRFLSLKNVKLGGAQITSDPS 130
Score = 38 (18.4 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 17/80 (21%), Positives = 36/80 (45%)
Query: 190 EDESIKTLYVGGVDARITEQDLRDNF--------YAHGEIESIKMHPQKAFAFVTYTTRE 241
++ S K+ ++ +DA I E + D + G S+ ++ + + + + E
Sbjct: 198 KNPSTKSFFLYNIDASIPEWKITDTVSQLLGIKKWKDGNSLSLIVNHKAKCGGLRFQSSE 257
Query: 242 GAEKAAEELSNKLVI-KGLR 260
E+ ++S LV KGL+
Sbjct: 258 LGERFVSKISETLVTPKGLK 277
>DICTYBASE|DDB_G0284563 [details] [associations]
symbol:cwc2 "pre-mRNA-splicing factor cwc2"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0045787 "positive regulation of cell cycle" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0033120 "positive
regulation of RNA splicing" evidence=ISS] [GO:0017070 "U6 snRNA
binding" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000974 "Prp19 complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0000387 "spliceosomal
snRNP assembly" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
dictyBase:DDB_G0284563 GenomeReviews:CM000153_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0000387 GO:GO:0045787 EMBL:AAFI02000066 GO:GO:0045292
GO:GO:0000974 eggNOG:NOG288665 GO:GO:0036002 GO:GO:0017070
GO:GO:0033120 RefSeq:XP_638557.1 ProteinModelPortal:Q54PH5
PRIDE:Q54PH5 EnsemblProtists:DDB0267176 GeneID:8624650
KEGG:ddi:DDB_G0284563 OMA:HRVATEV ProtClustDB:CLSZ2846722
Uniprot:Q54PH5
Length = 528
Score = 165 (63.1 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 55/212 (25%), Positives = 92/212 (43%)
Query: 80 VNREYFAEEHDR-RARAGIDYESSYG----KARP-SDTILKLQRTQPYYKRNR-AHVCSF 132
VN Y E+HD I Y G K R S+T + + + N+ A+ C +
Sbjct: 73 VNSRY--EDHDTDTTEYNIWYHKKLGNRNWKDRDVSETRCNVLKDCGKTRANKDANFCCY 130
Query: 133 YVRGECTRGAECPYRHEMPVTGELSQQNIKDRYYG-VNDPVALKLLNKAGEMPSLEPPED 191
+ RG+C GA+C H +P + + + +G +N G D
Sbjct: 131 FARGKCINGADCTSLHRIPTPEDDKRLRLTHDIFGRERHKTDRDDMNGVGSFS-----RD 185
Query: 192 ESIKTLYVGGVDARIT---EQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAE 248
+TLY+GG+ ++ E +R NF G IE +++ ++ +FV Y TR AE A E
Sbjct: 186 N--RTLYIGGIKTNVSGSLEDMVRKNFEEWGRIEYVRVITNRSISFVRYLTRSSAEFAKE 243
Query: 249 ELSNKLVIKGLRLKLMWGKPQTQRPEGESSDE 280
++++ + G L + W + P + DE
Sbjct: 244 AMTDQTLDNGELLNIRWAT-EDSNPYAKKVDE 274
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 157 (60.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 37/106 (34%), Positives = 62/106 (58%)
Query: 179 KAGEMPS--LEPPEDESIKT-LYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFV 235
+ G MP+ L PE + + T ++VGG+D+ +T++DL+ F GEI S+K+ K FV
Sbjct: 285 QGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFV 344
Query: 236 TYTTREGAEKAAEELSNKLVIKGLRLKLMWGK-PQTQRPEGESSDE 280
+ R AE+A E+L N VI ++L WG+ P ++P + ++
Sbjct: 345 QFVNRPNAEEALEKL-NGTVIGKQTVRLSWGRNPANKQPRDKYGNQ 389
>UNIPROTKB|Q51TF7 [details] [associations]
symbol:CWC2 "Pre-mRNA-splicing factor CWC2" species:242507
"Magnaporthe oryzae 70-15" [GO:0000387 "spliceosomal snRNP
assembly" evidence=ISS] [GO:0000974 "Prp19 complex" evidence=ISS]
[GO:0017070 "U6 snRNA binding" evidence=ISS] [GO:0033120 "positive
regulation of RNA splicing" evidence=ISS] [GO:0036002 "pre-mRNA
binding" evidence=ISS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0045787 "positive regulation of cell
cycle" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0007049 EMBL:CM001231
GO:GO:0000387 GO:GO:0045787 GO:GO:0045292 GO:GO:0000974
eggNOG:NOG288665 OrthoDB:EOG4PK5HT GO:GO:0036002 GO:GO:0017070
GO:GO:0033120 RefSeq:XP_003711071.1 ProteinModelPortal:Q51TF7
STRING:Q51TF7 EnsemblFungi:MGG_08641T0 GeneID:2678873
KEGG:mgr:MGG_08641 Uniprot:Q51TF7
Length = 394
Score = 155 (59.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 50/214 (23%), Positives = 92/214 (42%)
Query: 95 AGIDYESSYGKARPSDTILKLQRTQPYYKRNR---AHVCSFYVRGECTRGAECPYRHEMP 151
+G D E Y + + + Y K ++ ++ C F+ RG C +G +C Y H +P
Sbjct: 72 SGGDREDKYTSQTAAKGRCNVAKDSGYTKADQTTGSYFCLFFARGVCPKGQDCEYLHRLP 131
Query: 152 VTGELSQQNI----KDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARIT 207
+L N+ +DR+ D + G + S +T+YVG +
Sbjct: 132 TLHDLYSPNVDCFGRDRFSDYRDDM--------GGVGSFMRQN----RTVYVGRIHVTDD 179
Query: 208 -EQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266
E+ + +F G++E I++ Q+ AF+TYT A+ A E ++++ + L + W
Sbjct: 180 IEEVVARHFAEWGQVERIRVLNQRGVAFITYTNEANAQFAKEAMAHQSLDHNEILNVRWA 239
Query: 267 KPQTQ-RPEGESSDEVRQQAAIAHSGMLPRSLIS 299
+ + V +QAA A LP ++
Sbjct: 240 TADPNPMAQAREARRVEEQAAEAVRRALPAEFVA 273
>UNIPROTKB|Q4WU07 [details] [associations]
symbol:cwc2 "Pre-mRNA-splicing factor cwc2" species:330879
"Aspergillus fumigatus Af293" [GO:0000387 "spliceosomal snRNP
assembly" evidence=ISS] [GO:0000974 "Prp19 complex" evidence=ISS]
[GO:0017070 "U6 snRNA binding" evidence=ISS] [GO:0033120 "positive
regulation of RNA splicing" evidence=ISS] [GO:0036002 "pre-mRNA
binding" evidence=ISS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0045787 "positive regulation of cell
cycle" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0007049 EMBL:AAHF01000003
GO:GO:0000387 GO:GO:0045787 GO:GO:0045292 GO:GO:0000974
GenomeReviews:CM000173_GR RefSeq:XP_753957.1
ProteinModelPortal:Q4WU07 STRING:Q4WU07
EnsemblFungi:CADAFUAT00006062 GeneID:3510730 KEGG:afm:AFUA_5G06760
eggNOG:NOG288665 HOGENOM:HOG000172735 OMA:RWATVDP OrthoDB:EOG4PK5HT
GO:GO:0036002 GO:GO:0017070 GO:GO:0033120 Uniprot:Q4WU07
Length = 414
Score = 155 (59.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 52/213 (24%), Positives = 95/213 (44%)
Query: 95 AGIDYESSYGKARPSDTILKLQRTQPYYKRNR---AHVCSFYVRGECTRGAECPYRHEMP 151
+G D E Y + + + + Y + ++ ++ C F+ RG C +G EC Y H +P
Sbjct: 97 SGGDREDKYLSKHAAPSRCNIAKDSGYTRADKVPGSYFCLFFARGVCPKGHECEYLHRLP 156
Query: 152 VTGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDL 211
+L N+ +G D K + +M + ++ +TLYVG + +++
Sbjct: 157 TLHDLFNPNVD--CFG-RD----KFSDYRDDMGGVGSFTRQN-RTLYVGRIHVTDDIEEV 208
Query: 212 RDNFYAH-GEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG---- 266
+A G+I+ I++ + AFVTYT A+ A E ++++ + L + W
Sbjct: 209 VSRHFAEWGQIDRIRVLTSRGVAFVTYTNEANAQFAKEAMAHQSLDHNEILNVRWATVDP 268
Query: 267 KPQTQRPEGESSDEVRQQAAIAHSGMLPRSLIS 299
P Q+ E +E QAA A LP ++
Sbjct: 269 NPLAQKREARRLEE---QAAEAVRRALPAEFVA 298
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 154 (59.3 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 37/106 (34%), Positives = 61/106 (57%)
Query: 179 KAGEMPS--LEPPEDESIKT-LYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFV 235
+ G MPS E ++I T ++VGG+D+ +T++DL+ F GEI S+K+ K FV
Sbjct: 287 QGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFV 346
Query: 236 TYTTREGAEKAAEELSNKLVIKGLRLKLMWGK-PQTQRPEGESSDE 280
+ R AE+A E+L N VI ++L WG+ P ++P + ++
Sbjct: 347 QFVNRPNAEEALEKL-NGTVIGKQTVRLSWGRNPANKQPRDKYGNQ 391
>UNIPROTKB|Q6C007 [details] [associations]
symbol:CWC2 "Pre-mRNA-splicing factor CWC2" species:284591
"Yarrowia lipolytica CLIB122" [GO:0000387 "spliceosomal snRNP
assembly" evidence=ISS] [GO:0000974 "Prp19 complex" evidence=ISS]
[GO:0017070 "U6 snRNA binding" evidence=ISS] [GO:0033120 "positive
regulation of RNA splicing" evidence=ISS] [GO:0036002 "pre-mRNA
binding" evidence=ISS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0045787 "positive regulation of cell
cycle" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0007049 GO:GO:0000387 GO:GO:0045787
GO:GO:0045292 GO:GO:0000974 EMBL:CR382132 GenomeReviews:CR382132_GR
eggNOG:NOG288665 HOGENOM:HOG000172735 OrthoDB:EOG4PK5HT
GO:GO:0036002 GO:GO:0017070 GO:GO:0033120 OMA:NIRWANE
RefSeq:XP_506005.1 ProteinModelPortal:Q6C007 STRING:Q6C007
GeneID:2908799 KEGG:yli:YALI0F29073g Uniprot:Q6C007
Length = 382
Score = 150 (57.9 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 52/219 (23%), Positives = 101/219 (46%)
Query: 95 AGIDYESSYGKARPSDTILKLQRTQPYYKRNR---AHVCSFYVRGECTRGAECPYRHEMP 151
+G D E + +D + R Y + ++ ++ C ++ RG CT+G +C + H +P
Sbjct: 91 SGGDKEDEKFNQKKADGRCSIARDSGYTRADKVPGSYFCLYFARGLCTQGHKCEFLHRLP 150
Query: 152 VTGELSQQNI----KDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGV---DA 204
V ++ +DR++ D + G + S+ +TLYVG + DA
Sbjct: 151 VLTDMFSPTTDCFGRDRFFDYRDDM--------GGIGSISRVN----RTLYVGRIHVSDA 198
Query: 205 R---ITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRL 261
++ + +F G+++ I++ K AFVTY T A+ A E ++++ + G L
Sbjct: 199 AKAGALDEIVSRHFSEWGDVDRIRVLHDKGVAFVTYATEVNAQFAKEAMAHQSLDSGEVL 258
Query: 262 KLMWGKPQTQRPEGESSDEVR--QQAAIAHSGMLPRSLI 298
+ W Q P ++ ++ R + AA A +LP+ +
Sbjct: 259 NVRWAT-QDPDPLAQAREQRRLEENAAEAIKRLLPQEYV 296
Score = 39 (18.8 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 89 HDRRARAGIDYESSYGKARPSDT 111
H R+AR +D +S RP T
Sbjct: 57 HTRKARIQVDPDSVNTDDRPPQT 79
>UNIPROTKB|Q6BLU8 [details] [associations]
symbol:CWC2 "Pre-mRNA-splicing factor CWC2" species:284592
"Debaryomyces hansenii CBS767" [GO:0000387 "spliceosomal snRNP
assembly" evidence=ISS] [GO:0000974 "Prp19 complex" evidence=ISS]
[GO:0017070 "U6 snRNA binding" evidence=ISS] [GO:0033120 "positive
regulation of RNA splicing" evidence=ISS] [GO:0036002 "pre-mRNA
binding" evidence=ISS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0045787 "positive regulation of cell
cycle" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0007049 GO:GO:0000387 GO:GO:0045787
GO:GO:0045292 GO:GO:0000974 EMBL:CR382138 GenomeReviews:CR382138_GR
eggNOG:NOG288665 HOGENOM:HOG000172735 OrthoDB:EOG4PK5HT
GO:GO:0036002 GO:GO:0017070 GO:GO:0033120 RefSeq:XP_460823.2
ProteinModelPortal:Q6BLU8 STRING:Q6BLU8 GeneID:2904337
KEGG:dha:DEHA2F10560g OMA:NIRWANE Uniprot:Q6BLU8
Length = 339
Score = 149 (57.5 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 50/180 (27%), Positives = 83/180 (46%)
Query: 113 LKLQRTQPYYKR-NRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNI--KDRYYG 167
+ +++ Y K + A +C F+ RG C G +C Y H +P + + Q+ +D+
Sbjct: 82 VNIKKDSGYTKAPSNAPLCLFFARGCCYLGKKCSYYHRLPSDTDYFIPTQDCFGRDKTSD 141
Query: 168 VNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGV--DARITEQDLRDNFYAHGEIESIK 225
D +N G +S +TLY+GG+ D ++ E L +F G I+ I+
Sbjct: 142 YKDD-----MNGVGSF-------SKSNRTLYIGGLHMDDKM-ENTLTKHFQEFGSIDKIR 188
Query: 226 MHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK----PQTQRPEGESSDEV 281
+ KA AFVT+ T A+ A E + N+ + L + W P+ QR E +EV
Sbjct: 189 VLHSKACAFVTFRTENEAQFAKEAMQNQSLDGNEVLNIRWANEDPNPEAQRQEKRRLEEV 248
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 149 (57.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 37/116 (31%), Positives = 61/116 (52%)
Query: 166 YGV-NDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESI 224
YG N AL L G S+ E + T++VGG+DA +TE+DL F GE+ S+
Sbjct: 298 YGQQNGSQALTLAGGHGGNGSMSDGESNN-STIFVGGLDADVTEEDLMQPFSDFGEVVSV 356
Query: 225 KMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDE 280
K+ K FV + R+ AE+A L+ ++ K ++L WG+ ++ +S ++
Sbjct: 357 KIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNT-VRLSWGRSPNKQWRSDSGNQ 411
>UNIPROTKB|Q6T412 [details] [associations]
symbol:CWC2 "Pre-mRNA-splicing factor CWC2" species:5022
"Leptosphaeria maculans" [GO:0000387 "spliceosomal snRNP assembly"
evidence=ISS] [GO:0000974 "Prp19 complex" evidence=ISS] [GO:0017070
"U6 snRNA binding" evidence=ISS] [GO:0033120 "positive regulation
of RNA splicing" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0045787 "positive regulation of cell cycle"
evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0007049 GO:GO:0000387
GO:GO:0045787 GO:GO:0045292 GO:GO:0000974 GO:GO:0036002
GO:GO:0017070 GO:GO:0033120 EMBL:AY437641 ProteinModelPortal:Q6T412
Uniprot:Q6T412
Length = 421
Score = 148 (57.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 50/211 (23%), Positives = 95/211 (45%)
Query: 95 AGIDYESSYGKARPSDTILKLQRTQPYYKRNR---AHVCSFYVRGECTRGAECPYRHEMP 151
+G D E Y + + R Y K ++ ++ C F+ RG C +G +C Y H +P
Sbjct: 94 SGGDREDKYLSQTAAQGRCNVARDSGYTKADKTPGSYFCLFFARGICPKGVDCEYLHRLP 153
Query: 152 VTGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARIT-EQD 210
++ NI +G D K + +M + + ++ +TLY+G + E+
Sbjct: 154 TVTDIFPSNID--CFG-RD----KHSDYRDDMGGVGSFQRQN-RTLYIGRIHVTDDIEEI 205
Query: 211 LRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK--P 268
+ +F G+IE ++ + AFVTY ++ A E ++++ + L + W P
Sbjct: 206 VARHFQEWGQIERTRVLTARGVAFVTYMNEANSQFAKEAMAHQSLDHNEILNVRWATVDP 265
Query: 269 QTQRPEGESSDEVRQQAAIAHSGMLPRSLIS 299
Q + E+ + +QAA A LP + ++
Sbjct: 266 NPQAAKREAH-RIEEQAAEAIRKALPAAYVA 295
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 148 (57.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 29/91 (31%), Positives = 56/91 (61%)
Query: 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEEL 250
D S T++VGG+D+ +T+++LR +F GE+ S+K+ K FV ++ R A++A ++L
Sbjct: 291 DSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKL 350
Query: 251 SNKLVIKGLRLKLMWGK-PQTQRPEGESSDE 280
S ++ K ++L WG+ P ++ +S +
Sbjct: 351 SGAIIGKQA-VRLSWGRSPANKQMRTDSGSQ 380
>ASPGD|ASPL0000043504 [details] [associations]
symbol:AN2245 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 EMBL:BN001307 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0007049 GO:GO:0000387
GO:GO:0045787 EMBL:AACD01000036 GO:GO:0045292 GO:GO:0000974
eggNOG:NOG288665 HOGENOM:HOG000172735 OMA:RWATVDP OrthoDB:EOG4PK5HT
GO:GO:0036002 GO:GO:0017070 GO:GO:0033120 RefSeq:XP_659849.1
ProteinModelPortal:Q5BB35 STRING:Q5BB35
EnsemblFungi:CADANIAT00008932 GeneID:2875329 KEGG:ani:AN2245.2
Uniprot:Q5BB35
Length = 417
Score = 146 (56.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 53/213 (24%), Positives = 94/213 (44%)
Query: 95 AGIDYESSYGKARPSDTILKLQRTQPYYKRNR---AHVCSFYVRGECTRGAECPYRHEMP 151
+G D E Y + + + R Y + ++ ++ C F+ RG C +G EC Y H +P
Sbjct: 102 SGGDREDKYLSKTAAPSRCNIARDSGYTRADKVRGSYFCLFFARGICPKGHECEYLHRLP 161
Query: 152 VTGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARIT-EQD 210
+L N+ +G D K + +M + ++ +TLYVG + E+
Sbjct: 162 TLHDLFNPNVD--CFG-RD----KHSDYRDDMGGVGSFMRQN-RTLYVGRIHVTDDIEEV 213
Query: 211 LRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG---- 266
+ +F G+I+ ++ + AFVTYT A+ A E ++++ + L + W
Sbjct: 214 VARHFAEWGQIDRTRVLTSRGVAFVTYTNEANAQFAKEAMAHQSLDHNEILNVRWATVDP 273
Query: 267 KPQTQRPEGESSDEVRQQAAIAHSGMLPRSLIS 299
P Q+ E +E QAA A LP ++
Sbjct: 274 NPLAQKREARRLEE---QAAEAVRRALPAEFVA 303
>UNIPROTKB|Q5BB35 [details] [associations]
symbol:cwc2 "Pre-mRNA-splicing factor cwc2" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000387 "spliceosomal snRNP
assembly" evidence=ISS] [GO:0000974 "Prp19 complex" evidence=ISS]
[GO:0017070 "U6 snRNA binding" evidence=ISS] [GO:0033120 "positive
regulation of RNA splicing" evidence=ISS] [GO:0036002 "pre-mRNA
binding" evidence=ISS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0045787 "positive regulation of cell
cycle" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 EMBL:BN001307
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0007049
GO:GO:0000387 GO:GO:0045787 EMBL:AACD01000036 GO:GO:0045292
GO:GO:0000974 eggNOG:NOG288665 HOGENOM:HOG000172735 OMA:RWATVDP
OrthoDB:EOG4PK5HT GO:GO:0036002 GO:GO:0017070 GO:GO:0033120
RefSeq:XP_659849.1 ProteinModelPortal:Q5BB35 STRING:Q5BB35
EnsemblFungi:CADANIAT00008932 GeneID:2875329 KEGG:ani:AN2245.2
Uniprot:Q5BB35
Length = 417
Score = 146 (56.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 53/213 (24%), Positives = 94/213 (44%)
Query: 95 AGIDYESSYGKARPSDTILKLQRTQPYYKRNR---AHVCSFYVRGECTRGAECPYRHEMP 151
+G D E Y + + + R Y + ++ ++ C F+ RG C +G EC Y H +P
Sbjct: 102 SGGDREDKYLSKTAAPSRCNIARDSGYTRADKVRGSYFCLFFARGICPKGHECEYLHRLP 161
Query: 152 VTGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARIT-EQD 210
+L N+ +G D K + +M + ++ +TLYVG + E+
Sbjct: 162 TLHDLFNPNVD--CFG-RD----KHSDYRDDMGGVGSFMRQN-RTLYVGRIHVTDDIEEV 213
Query: 211 LRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG---- 266
+ +F G+I+ ++ + AFVTYT A+ A E ++++ + L + W
Sbjct: 214 VARHFAEWGQIDRTRVLTSRGVAFVTYTNEANAQFAKEAMAHQSLDHNEILNVRWATVDP 273
Query: 267 KPQTQRPEGESSDEVRQQAAIAHSGMLPRSLIS 299
P Q+ E +E QAA A LP ++
Sbjct: 274 NPLAQKREARRLEE---QAAEAVRRALPAEFVA 303
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 143 (55.4 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 32/101 (31%), Positives = 54/101 (53%)
Query: 181 GEMPSLEPPEDESIK-TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTT 239
G M + ES T++VGG+D + ++DLR F GE+ S+K+ K FV +
Sbjct: 306 GSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFAD 365
Query: 240 REGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDE 280
R+ AE A E L+ ++ K ++L WG+ ++ G+S +
Sbjct: 366 RKSAEDAIESLNGTVIGKNT-VRLSWGRSPNKQWRGDSGQQ 405
>POMBASE|SPAC3A12.11c [details] [associations]
symbol:cwf2 "RNA-binding protein Cwf2" species:4896
"Schizosaccharomyces pombe" [GO:0000387 "spliceosomal snRNP
assembly" evidence=ISS] [GO:0000974 "Prp19 complex" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017070 "U6 snRNA
binding" evidence=ISS] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS;IMP] [GO:0045787 "positive regulation of cell cycle"
evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 PomBase:SPAC3A12.11c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0007049 GO:GO:0000387
GO:GO:0045787 GO:GO:0045292 GO:GO:0000974 eggNOG:NOG288665
HOGENOM:HOG000172735 OMA:RWATVDP OrthoDB:EOG4PK5HT GO:GO:0036002
GO:GO:0017070 GO:GO:0033120 EMBL:AF250026 RefSeq:NP_593337.1
ProteinModelPortal:P87126 DIP:DIP-34853N IntAct:P87126
STRING:P87126 EnsemblFungi:SPAC3A12.11c.1 GeneID:2542531
KEGG:spo:SPAC3A12.11c NextBio:20803584 Uniprot:P87126
Length = 388
Score = 140 (54.3 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 45/196 (22%), Positives = 88/196 (44%)
Query: 109 SDTILKLQRTQPYYKRNR---AHVCSFYVRGECTRGAECPYRHEMPVTGELSQQNIKDRY 165
S+T + R Y K ++ + C ++ RG C+ G++C Y H +P + N+
Sbjct: 93 SETRCVISRDSGYTKADKNPGSFFCLYFARGMCSEGSKCEYLHRLPKDTDFFNANVD--C 150
Query: 166 YGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAH-GEIESI 224
+G + + G + S TLYVGG+ +++ +A G+IE I
Sbjct: 151 FGREKHADYR--DDMGGVGSFLRQN----YTLYVGGITPTDDIEEIVSRHFAEWGDIERI 204
Query: 225 KMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVR-- 282
++ + AF+TY A+ A E ++++ + L + W P ++ ++ R
Sbjct: 205 RVLNSRGIAFITYLNEANAQFAKEAMAHQSLDHDECLNVRWATTDPN-PASQARNQRRLE 263
Query: 283 QQAAIAHSGMLPRSLI 298
++AA A +LP+ +
Sbjct: 264 ERAANAVKKLLPKQFL 279
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 41/114 (35%), Positives = 58/114 (50%)
Query: 161 IKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGE 220
I ++ VN+P +L ++ +P L D + +YV +D I E L+ F A+GE
Sbjct: 180 INNKPIKVNNPTHKRLNSQTSTIPDLTST-DPNNTAIYVSQLDHYIDEGVLQTIFGAYGE 238
Query: 221 IESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPE 274
I IKM K AFV + RE AE AA L+N + RLK+ WGK P+
Sbjct: 239 ISYIKMLTNKFSAFVNFVNRESAE-AAFGLNN-FPVGNTRLKVQWGKNVAPPPK 290
>UNIPROTKB|I3LRX5 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IEA] [GO:0017148 "negative
regulation of translation" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
GeneTree:ENSGT00680000099967 EMBL:CU929337 RefSeq:XP_003481239.1
Ensembl:ENSSSCT00000027073 GeneID:100736894 KEGG:ssc:100736894
OMA:AGPMANQ Uniprot:I3LRX5
Length = 220
Score = 127 (49.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GGV + +TEQ +R F G+I I++ P K ++FV + + E A A + N
Sbjct: 49 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSV-NGTT 107
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 108 IEGHVVKCYWGK 119
Score = 38 (18.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 320 FNIPPPPQQDRAYYPS 335
+ + PPP Q+ + PS
Sbjct: 192 YGVQPPPGQNGSMMPS 207
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 133 (51.9 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEEL 250
D + T++VGG+DA +T+ +L+ F GE+ +K+ P K FV Y + AE A L
Sbjct: 256 DPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVL 315
Query: 251 SNKLVIKGLRLKLMWGK-PQTQRPEGE 276
N + G ++L WG+ P Q + +
Sbjct: 316 -NGTQLGGQSIRLSWGRSPNKQSDQAQ 341
Score = 42 (19.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 319 YFNIPPPPQQDRAYY---PSMDP 338
Y+ PP PQ Y P+ DP
Sbjct: 347 YYGYPPQPQGGYGYAAQPPTQDP 369
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 134 (52.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 33/110 (30%), Positives = 51/110 (46%)
Query: 167 GVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKM 226
G+ P+ + G + D + T++VGG+ +TE +LR F GEI +K+
Sbjct: 258 GMYPPMGAPPMGFYGAPQPMNQFTDPNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKI 317
Query: 227 HPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQR-PEG 275
P K FV + R AE A ++ I R++L WG+ Q P G
Sbjct: 318 PPGKGCGFVQFVQRHAAEMAINQMQG-YPIGNSRVRLSWGRSQNNSGPAG 366
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 138 (53.6 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 44/152 (28%), Positives = 67/152 (44%)
Query: 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEEL 250
D + T++VGG+ + ++E L F G I+ +K+ P K FV Y+ RE AE+A +
Sbjct: 517 DPNNTTVFVGGLSSDVSEPTLHTLFKPFGLIQQVKIPPGKNCGFVKYSNREEAEEAIAAM 576
Query: 251 SNKLVIKGLRLKLMWGKPQT-----QRPEGESSDEVRQ---QAAIAHSGMLPRSLISXXX 302
VI G R++L WG+ Q+ + + +V Q QAA++ GM P S I+
Sbjct: 577 QG-FVIGGNRVRLSWGRVSVSNKKYQQQQQQQVAQVAQLQVQAALS-MGMDPASAIAAAA 634
Query: 303 XXXXXXXXXXXXXXXXYFNIPPPPQQDRAYYP 334
P P Q R P
Sbjct: 635 AAAAAAATASGGGGGSGGYPPNIPLQHRQVVP 666
>UNIPROTKB|P0CR14 [details] [associations]
symbol:CWC2 "Pre-mRNA-splicing factor CWC2" species:214684
"Cryptococcus neoformans var. neoformans JEC21" [GO:0000387
"spliceosomal snRNP assembly" evidence=ISS] [GO:0000974 "Prp19
complex" evidence=ISS] [GO:0017070 "U6 snRNA binding" evidence=ISS]
[GO:0033120 "positive regulation of RNA splicing" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] [GO:0045787 "positive
regulation of cell cycle" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0007049
GO:GO:0000387 GO:GO:0045787 GO:GO:0045292 GO:GO:0000974
GO:GO:0036002 GO:GO:0017070 GO:GO:0033120 EMBL:AE017349
RefSeq:XP_572680.1 ProteinModelPortal:P0CR14 GeneID:3259504
KEGG:cne:CNI02720 Uniprot:P0CR14
Length = 342
Score = 132 (51.5 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 54/215 (25%), Positives = 90/215 (41%)
Query: 95 AGIDYESSYGKARPSDTILKLQRTQPYYKRNRA---HVCSFYVRGECTRGAECPYRHEMP 151
AG D E + S T + R Y + + + C F+ RG C G EC Y H +P
Sbjct: 45 AGGDREDALASKVHSQTRCIISRDAGYTRADATGNKYCCLFFARGCCPYGYECQYLHRLP 104
Query: 152 VTGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDL 211
+ N +D +G + + G + S + +TLY+G + ++ +
Sbjct: 105 LPSHQLPDNSRD-CFGREKHADYR--DDMGGVGSF----NRQNRTLYIGKIQESPDKKQM 157
Query: 212 RDNFYAH----GEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG- 266
+ H G+I + + AFVTY T A A E ++N+ + L + W
Sbjct: 158 TETLLRHFGEWGKIVKYNILFGRGVAFVTYETDHQASFAKEAMANQSMDGDEILNVRWAT 217
Query: 267 ---KPQTQRPEGESSDEVRQQAAIAHSGMLPRSLI 298
P + E + +E+ Q+A IA GML +L+
Sbjct: 218 EDPNPGEKVAEEKRIEEIGQKA-IA--GMLDENLV 249
>UNIPROTKB|P0CR15 [details] [associations]
symbol:CWC2 "Pre-mRNA-splicing factor CWC2" species:283643
"Cryptococcus neoformans var. neoformans B-3501A" [GO:0000387
"spliceosomal snRNP assembly" evidence=ISS] [GO:0000974 "Prp19
complex" evidence=ISS] [GO:0017070 "U6 snRNA binding" evidence=ISS]
[GO:0033120 "positive regulation of RNA splicing" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] [GO:0045787 "positive
regulation of cell cycle" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0007049
GO:GO:0000387 GO:GO:0045787 GO:GO:0045292 GO:GO:0000974
GO:GO:0036002 GO:GO:0017070 GO:GO:0033120 EMBL:AAEY01000042
RefSeq:XP_773806.1 ProteinModelPortal:P0CR15 GeneID:4937781
KEGG:cnb:CNBH2580 Uniprot:P0CR15
Length = 342
Score = 132 (51.5 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 54/215 (25%), Positives = 90/215 (41%)
Query: 95 AGIDYESSYGKARPSDTILKLQRTQPYYKRNRA---HVCSFYVRGECTRGAECPYRHEMP 151
AG D E + S T + R Y + + + C F+ RG C G EC Y H +P
Sbjct: 45 AGGDREDALASKVHSQTRCIISRDAGYTRADATGNKYCCLFFARGCCPYGYECQYLHRLP 104
Query: 152 VTGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDL 211
+ N +D +G + + G + S + +TLY+G + ++ +
Sbjct: 105 LPSHQLPDNSRD-CFGREKHADYR--DDMGGVGSF----NRQNRTLYIGKIQESPDKKQM 157
Query: 212 RDNFYAH----GEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG- 266
+ H G+I + + AFVTY T A A E ++N+ + L + W
Sbjct: 158 TETLLRHFGEWGKIVKYNILFGRGVAFVTYETDHQASFAKEAMANQSMDGDEILNVRWAT 217
Query: 267 ---KPQTQRPEGESSDEVRQQAAIAHSGMLPRSLI 298
P + E + +E+ Q+A IA GML +L+
Sbjct: 218 EDPNPGEKVAEEKRIEEIGQKA-IA--GMLDENLV 249
>UNIPROTKB|Q49AS9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 EMBL:AC012468
HOVERGEN:HBG105006 RefSeq:NP_001029097.1 RefSeq:NP_003243.1
UniGene:Hs.501203 GeneID:7073 KEGG:hsa:7073 CTD:7073
HGNC:HGNC:11804 PharmGKB:PA36513 ChiTaRS:TIAL1 GenomeRNAi:7073
NextBio:27661 EMBL:BC030025 IPI:IPI01013673 SMR:Q49AS9
STRING:Q49AS9 Ensembl:ENST00000369092 UCSC:uc001lek.1
Uniprot:Q49AS9
Length = 252
Score = 129 (50.5 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GG+ + +T+Q +R F G+I I++ P+K ++FV ++T E A A + N
Sbjct: 83 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSV-NGTT 141
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 142 IEGHVVKCYWGK 153
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 133 (51.9 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEEL 250
D + T++VGG+DA +T+ L++ F +GEI +K+ K FV ++ + AE+A L
Sbjct: 257 DPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRML 316
Query: 251 SNKLVIKGLRLKLMWGKPQTQRPEGESS 278
N + + G ++L WG+ + + G+ S
Sbjct: 317 -NGVQLGGTTVRLSWGRSPSNKQSGDPS 343
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 128 (50.1 bits), Expect = 6.7e-06, Sum P(3) = 6.7e-06
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GGV + +TEQ +R F G+I I++ P K ++FV +++ E A A + N
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSV-NGTT 273
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 274 IEGHVVKCYWGK 285
Score = 39 (18.8 bits), Expect = 6.7e-06, Sum P(3) = 6.7e-06
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 320 FNIPPPPQQDRAYYPS 335
+++PPP Q+ + PS
Sbjct: 358 YSVPPPQGQNGSMLPS 373
Score = 38 (18.4 bits), Expect = 6.7e-06, Sum P(3) = 6.7e-06
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 101 SSYGKARPSDTILKLQRTQPYY 122
SS K S T++ QR+Q ++
Sbjct: 85 SSQKKDTSSSTVVSTQRSQDHF 106
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 131 (51.2 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GGV +TEQ +R F G+I +++ P K ++FV + + E A A + N
Sbjct: 205 TVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPDKGYSFVRFNSHESAAHAIVSV-NGTS 263
Query: 256 IKGLRLKLMWGKPQTQRPEGESSDEVRQQAAI 287
++G +K WGK T +V QQ+ +
Sbjct: 264 LEGHIVKCYWGKETTDMVSPMQQVQVPQQSKV 295
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 131 (51.2 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 36/113 (31%), Positives = 53/113 (46%)
Query: 166 YGVNDPVALKLLNKAGEMPSLEPPE---DESIKTLYVGGVDARITEQDLRDNFYAHGEIE 222
YG P A N A P ++P D + T++VGG+ +TE +LR F G+I
Sbjct: 254 YGYQQPQAPPP-NTAFNNP-MQPMNQFTDPNNTTVFVGGLSGYVTEDELRSFFQGFGDIT 311
Query: 223 SIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEG 275
+K+ P K FV + R AE A ++ I R++L WG+ Q G
Sbjct: 312 YVKIPPGKGCGFVQFVHRHAAEMAINQMQG-YPIGNSRVRLSWGRSQNNSGVG 363
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GG+ + +T+Q +R F G+I I++ P+K ++FV ++T E A A + N
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSV-NGTT 281
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 282 IEGHVVKCYWGK 293
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GG+ + +T+Q +R F G+I I++ P+K ++FV ++T E A A + N
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSV-NGTT 281
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 282 IEGHVVKCYWGK 293
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GG+ + +T+Q +R F G+I I++ P+K ++FV ++T E A A + N
Sbjct: 206 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSV-NGTT 264
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 265 IEGHVVKCYWGK 276
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 129 (50.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GG+ + +T+Q +R F G+I I++ P+K ++FV ++T E A A + N
Sbjct: 206 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSV-NGTT 264
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 265 IEGHVVKCYWGK 276
>ASPGD|ASPL0000000121 [details] [associations]
symbol:AN6331 species:162425 "Emericella nidulans"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR002483 InterPro:IPR012677
Pfam:PF01480 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000107 EMBL:BN001301
eggNOG:NOG280405 Gene3D:1.20.1390.10 SUPFAM:SSF101233
OrthoDB:EOG4BGD4C RefSeq:XP_663935.1 ProteinModelPortal:Q5AZE9
EnsemblFungi:CADANIAT00006655 GeneID:2871230 KEGG:ani:AN6331.2
HOGENOM:HOG000166860 OMA:SSRRRCK Uniprot:Q5AZE9
Length = 733
Score = 117 (46.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 31/104 (29%), Positives = 53/104 (50%)
Query: 179 KAGEMPSLEPPEDESIKTLYVGGV-DARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTY 237
+ E + P +D S+KT+ V + D ++ E +R+ F +GEI +++ P + A +TY
Sbjct: 310 RRSEFSAAGPSDDPSMKTIVVEQIPDDKLDEFTVREFFSQYGEITDLQLQPHRKLALITY 369
Query: 238 TTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ--TQRPEGESSD 279
A KAA S K++ +K+ W KP+ QR G +
Sbjct: 370 ADHATA-KAAWS-SPKVIFDNRFVKVYWHKPKGHDQRAGGNGRE 411
Score = 60 (26.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 130 CSFY-VRGECTRGAECPYRHE 149
C FY +G C G CPY+H+
Sbjct: 237 CPFYETQGICYLGGACPYQHD 257
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 129 (50.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GG+ + +T+Q +R F G+I I++ P+K ++FV ++T E A A + N
Sbjct: 222 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSV-NGTT 280
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 281 IEGHVVKCYWGK 292
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 129 (50.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GG+ + +T+Q +R F G+I I++ P+K ++FV ++T E A A + N
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSV-NGTT 281
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 282 IEGHVVKCYWGK 293
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 129 (50.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GG+ + +T+Q +R F G+I I++ P+K ++FV ++T E A A + N
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSV-NGTT 281
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 282 IEGHVVKCYWGK 293
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 129 (50.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GG+ + +T+Q +R F G+I I++ P+K ++FV ++T E A A + N
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSV-NGTT 281
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 282 IEGHVVKCYWGK 293
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 129 (50.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GG+ + +T+Q +R F G+I I++ P+K ++FV ++T E A A + N
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSV-NGTT 281
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 282 IEGHVVKCYWGK 293
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 129 (50.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GG+ + +T+Q +R F G+I I++ P+K ++FV ++T E A A + N
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSV-NGTT 281
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 282 IEGHVVKCYWGK 293
>UNIPROTKB|F5H8B8 [details] [associations]
symbol:NOL8 "Nucleolar protein 8" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL136097 HGNC:HGNC:23387
IPI:IPI01015620 ProteinModelPortal:F5H8B8 SMR:F5H8B8
Ensembl:ENST00000536624 ArrayExpress:F5H8B8 Bgee:F5H8B8
Uniprot:F5H8B8
Length = 145
Score = 107 (42.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 30/113 (26%), Positives = 56/113 (49%)
Query: 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKM--------HPQKAFAFVTYTTREGAEKA 246
K LYVGG+ I+E DL++ F GE+ +++ +PQK FA++ + E K
Sbjct: 8 KRLYVGGLSQDISEADLQNQFSRFGEVSDVEIITRKDDQGNPQKVFAYINISVAEADLKK 67
Query: 247 AEELSNKLVIKGLRLKLMWGKPQ-TQR--PEGESSDEVRQQAAIAHSGMLPRS 296
+ NK KG L++ K R E E++ ++++ ++ +L ++
Sbjct: 68 CMSVLNKTKWKGGTLQIQLAKESFLHRLAQEREAAKAKKEESTTGNANLLEKT 120
>WB|WBGene00017929 [details] [associations]
symbol:grld-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921
Pfam:PF07744 EMBL:FO080227 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
GeneTree:ENSGT00530000063730 RefSeq:NP_741283.1
ProteinModelPortal:H2KYB8 SMR:H2KYB8 PRIDE:H2KYB8
EnsemblMetazoa:F29C4.7a.1 EnsemblMetazoa:F29C4.7a.2 GeneID:176827
KEGG:cel:CELE_F29C4.7 CTD:176827 WormBase:F29C4.7a OMA:ERNDCAR
Uniprot:H2KYB8
Length = 520
Score = 130 (50.8 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 186 LEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKM----HPQKAFAFVTYTTRE 241
L+ +DE+ +TL+VG + + + E+++R F HG++E + + + A+AFV + T +
Sbjct: 160 LKQDDDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVD 219
Query: 242 GAEKA-AEELSNKLVIKGLRLKLMWGKPQTQR 272
A +A AEE + G R+K+ +GK Q R
Sbjct: 220 QAIQAKAEEQDRPIRAGGSRMKIGYGKSQVSR 251
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 129 (50.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
++YVG + + T+ DLRD F +G+I +++ + +AFV Y +E A KA E++ K
Sbjct: 328 SVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMNGK-E 386
Query: 256 IKGLRLKLMWGKPQ 269
+ G +++ WG+ Q
Sbjct: 387 MAGNQVRCSWGRTQ 400
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 124 (48.7 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEEL 250
D + T++VG VD +TE DL+ F GE+ +K+ K FV Y R AE+A L
Sbjct: 274 DPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVL 333
Query: 251 SNKLVIKGLRLKLMWGK-PQTQRPEGESS 278
N + G ++L WG+ P ++ + + +
Sbjct: 334 -NGTQLGGQSIRLSWGRSPSNKQTQPDQA 361
Score = 44 (20.5 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 320 FNIPPPPQQDRAYY 333
+ PPPQ AYY
Sbjct: 380 YGYAPPPQDPNAYY 393
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 127 (49.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GGV + +TEQ +R F G+I I++ P K ++FV + + E A A + N
Sbjct: 204 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSV-NGTT 262
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 263 IEGHVVKCYWGK 274
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 127 (49.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GGV + +TEQ +R F G+I I++ P K ++F+ +++ E A A + N
Sbjct: 204 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAIVSV-NGTT 262
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 263 IEGHVVKCYWGK 274
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 126 (49.4 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GG+ + +++Q +R F G+I I++ P+K ++FV + + EGA A + N
Sbjct: 207 TVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFDSHEGAAHAIVSV-NGTC 265
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 266 IEGHTVKCYWGK 277
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 127 (49.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEEL 250
D + T++VGG+D + E+ LR F +GE+ +K+ K FV + TR AE+A L
Sbjct: 278 DPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSL 337
Query: 251 SNKLVIKGLRLKLMWGK-PQTQRPE 274
N + G ++L WG+ P +++ +
Sbjct: 338 -NGTQLGGQSIRLSWGRSPSSKQTD 361
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 127 (49.8 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GGV + +TEQ +R F G+I I++ P K ++F+ +++ E A A + N
Sbjct: 211 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAIVSV-NGTT 269
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 270 IEGHVVKCYWGK 281
Score = 38 (18.4 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 101 SSYGKARPSDTILKLQRTQPYY 122
SS K S T++ QR+Q ++
Sbjct: 81 SSQKKDTSSSTVVSTQRSQDHF 102
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 127 (49.8 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GGV + +TEQ +R F G+I I++ P K ++FV + + E A A + N
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSV-NGTT 273
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 274 IEGHVVKCYWGK 285
Score = 38 (18.4 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 101 SSYGKARPSDTILKLQRTQPYY 122
SS K S T++ QR+Q ++
Sbjct: 85 SSQKKDTSSSTVVSTQRSQDHF 106
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 127 (49.8 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GGV + +TEQ +R F G+I I++ P K ++FV + + E A A + N
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSV-NGTT 273
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 274 IEGHVVKCYWGK 285
Score = 38 (18.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 101 SSYGKARPSDTILKLQRTQPYY 122
SS K S T++ QR+Q ++
Sbjct: 85 SSQKKDTSSSTVVSTQRSQDHF 106
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 127 (49.8 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GGV + +TEQ +R F G+I I++ P K ++FV + + E A A + N
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSV-NGTT 273
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 274 IEGHVVKCYWGK 285
Score = 38 (18.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 101 SSYGKARPSDTILKLQRTQPYY 122
SS K S T++ QR+Q ++
Sbjct: 85 SSQKKDTSSSTVVSTQRSQDHF 106
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 127 (49.8 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GGV + +TEQ +R F G+I I++ P K ++FV + + E A A + N
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSV-NGTT 273
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 274 IEGHVVKCYWGK 285
Score = 38 (18.4 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 101 SSYGKARPSDTILKLQRTQPYY 122
SS K S T++ QR+Q ++
Sbjct: 85 SSQKKDTSSSTVVSTQRSQDHF 106
>UNIPROTKB|F1SF34 [details] [associations]
symbol:F1SF34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 EMBL:CU929885
Ensembl:ENSSSCT00000017014 OMA:SPDIETH Uniprot:F1SF34
Length = 250
Score = 122 (48.0 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GG+ + +T+Q +R F G+I I++ P+K ++FV ++T A A ++
Sbjct: 84 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKRYSFVRFSTHGSAAHAIVSVTGT-T 142
Query: 256 IKGLRLKLMWGKPQTQRPEGES 277
I+G +K WGK E S
Sbjct: 143 IEGRVVKCYWGKESPDMTENYS 164
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 129 (50.5 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 177 LNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKM------HPQK 230
++ AG PS P ++ +LYVG +D +TE L + F G + SI++
Sbjct: 43 IDTAGPTPSSAAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSL 102
Query: 231 AFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267
+A+V Y T EKA EEL N +IKG ++MW +
Sbjct: 103 GYAYVNYNTTADGEKALEEL-NYTLIKGRPCRIMWSQ 138
>UNIPROTKB|F5H0I5 [details] [associations]
symbol:NOL8 "Nucleolar protein 8" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL136097 HGNC:HGNC:23387
IPI:IPI01013620 ProteinModelPortal:F5H0I5 SMR:F5H0I5
Ensembl:ENST00000545444 ArrayExpress:F5H0I5 Bgee:F5H0I5
Uniprot:F5H0I5
Length = 130
Score = 103 (41.3 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKM--------HPQKAFAFVTYTTREGAEKA 246
K LYVGG+ I+E DL++ F GE+ +++ +PQK FA++ + E K
Sbjct: 8 KRLYVGGLSQDISEADLQNQFSRFGEVSDVEIITRKDDQGNPQKVFAYINISVAEADLKK 67
Query: 247 AEELSNKLVIKGLRLKLMWGK 267
+ NK KG L++ K
Sbjct: 68 CMSVLNKTKWKGGTLQIQLAK 88
>UNIPROTKB|F5H532 [details] [associations]
symbol:NOL8 "Nucleolar protein 8" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL136097 HGNC:HGNC:23387
IPI:IPI01012415 ProteinModelPortal:F5H532 SMR:F5H532
Ensembl:ENST00000445919 ArrayExpress:F5H532 Bgee:F5H532
Uniprot:F5H532
Length = 101
Score = 103 (41.3 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKM--------HPQKAFAFVTYTTREGAEKA 246
K LYVGG+ I+E DL++ F GE+ +++ +PQK FA++ + E K
Sbjct: 8 KRLYVGGLSQDISEADLQNQFSRFGEVSDVEIITRKDDQGNPQKVFAYINISVAEADLKK 67
Query: 247 AEELSNKLVIKGLRLKLMWGK 267
+ NK KG L++ K
Sbjct: 68 CMSVLNKTKWKGGTLQIQLAK 88
>FB|FBgn0015520 [details] [associations]
symbol:nonA-l "nonA-like" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008187 "poly-pyrimidine
tract binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005681 EMBL:U31961 GO:GO:0000398
GO:GO:0008187 InterPro:IPR012975 Pfam:PF08075 FlyBase:FBgn0015520
ProteinModelPortal:Q7JPC7 STRING:Q7JPC7 PRIDE:Q7JPC7
InParanoid:Q7JPC7 ArrayExpress:Q7JPC7 Bgee:Q7JPC7 Uniprot:Q7JPC7
Length = 642
Score = 127 (49.8 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 35/98 (35%), Positives = 52/98 (53%)
Query: 172 VALKLLNKAG---EMPSLEPPEDESI---KTLYVGGVDARITEQDLRDNFYAHGEIESIK 225
+A +LL+ +G E+P +E P D LYVG + + T+ DLR+ F +GEI I
Sbjct: 248 IAQRLLDISGPTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIF 307
Query: 226 MHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263
+P+K F F+ + AEKA L L KG L++
Sbjct: 308 SNPEKNFTFLRLDYYQNAEKAKRALDGSLR-KGRVLRV 344
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 124 (48.7 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
T+Y GG+ + +TE +R F G+I I++ P+K ++F+ +++ E A A + N
Sbjct: 224 TVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVFPEKGYSFIRFSSHESAAHAIVSV-NGTT 282
Query: 256 IKGLRLKLMWGK 267
I+G +K WGK
Sbjct: 283 IEGHVVKCYWGK 294
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 122 (48.0 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 38/112 (33%), Positives = 57/112 (50%)
Query: 178 NKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESI--KMHPQ----KA 231
N + + S + + + L+VGG+ TE++LRD+F +GEIESI K PQ +
Sbjct: 39 NGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRG 98
Query: 232 FAFVTYTTREGAEK--AAEE-LSNKLVIKGLRLKLMWGKPQTQRPEGESSDE 280
FAF+ +T E +K AA+E + N + + K GK E SDE
Sbjct: 99 FAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDE 150
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 101 (40.6 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 26/89 (29%), Positives = 50/89 (56%)
Query: 197 LYVGGVDARITEQDLRDNFYAHGEIESIKM------HPQKAFAFVTYTTREGAEKAAEEL 250
+YVG + +T +L+ F +GEIE K+ K FAF+TY T++ A++A +
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK- 78
Query: 251 SNKLVIKGLRLKLMWGKPQT--QRPEGES 277
+N + ++G ++++ + T +R +G S
Sbjct: 79 ANGIDLQGRKIRVNIARENTGDRRRDGGS 107
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 101 (40.6 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 26/89 (29%), Positives = 50/89 (56%)
Query: 197 LYVGGVDARITEQDLRDNFYAHGEIESIKM------HPQKAFAFVTYTTREGAEKAAEEL 250
+YVG + +T +L+ F +GEIE K+ K FAF+TY T++ A++A +
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK- 78
Query: 251 SNKLVIKGLRLKLMWGKPQT--QRPEGES 277
+N + ++G ++++ + T +R +G S
Sbjct: 79 ANGIDLQGRKIRVNIARENTGDRRRDGGS 107
>ZFIN|ZDB-GENE-051120-15 [details] [associations]
symbol:zgc:123010 "zgc:123010" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR011990
InterPro:IPR012677 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF00076 PROSITE:PS50005 PROSITE:PS50102 PROSITE:PS50103
PROSITE:PS50293 SMART:SM00028 SMART:SM00360 ZFIN:ZDB-GENE-051120-15
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GeneTree:ENSGT00510000049407 EMBL:CU462910 IPI:IPI00785732
Ensembl:ENSDART00000057073 ArrayExpress:F1QMD2 Bgee:F1QMD2
Uniprot:F1QMD2
Length = 501
Score = 124 (48.7 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 48/175 (27%), Positives = 83/175 (47%)
Query: 104 GKARPSDTILKLQRTQPYYKRNRAHVCSFYVRGECTRGAE----CPYRHEMPVTGELSQQ 159
G R ++ L+R Y + +A + G+C C + ++ G +Q
Sbjct: 281 GYYRRGSALMGLKR---YSEAEKAMEQVLKLDGDCEEAVNDLLYCKVQ-QLTELGYDEEQ 336
Query: 160 NIK--DRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYA 217
+I+ ++Y V VA K N+ + L+P S L+VG V +TE+ LRD F
Sbjct: 337 SIQLLEKYNTVQAVVAAKASNQ--DCALLQPGPCNS---LWVGNVTTELTEKHLRDLFKI 391
Query: 218 HGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQR 272
+GEI+SI++ ++ AFV + A +A E+L+ I+ RL + + + QR
Sbjct: 392 YGEIDSIRVLHERFCAFVNFKNANMASRAMEKLNGHF-IENTRLVVRYPDRRIQR 445
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 123 (48.4 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 31/112 (27%), Positives = 55/112 (49%)
Query: 156 LSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNF 215
+ QQ + Y V P A+ +A P P D + T+ V +D +TE++L+ F
Sbjct: 201 VQQQYVTKAVYPVTVPSAVAAPVQAYVAP---PESDVTCTTISVANLDQNVTEEELKKAF 257
Query: 216 YAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267
GE+ +K+ K + +V + TR AE+A + + + VI +++ W K
Sbjct: 258 SQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQ-VIGQQAVRISWSK 308
>DICTYBASE|DDB_G0271014 [details] [associations]
symbol:DDB_G0271014 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0271014 EMBL:AAFI02000005 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
RefSeq:XP_646494.1 ProteinModelPortal:Q55CI7
EnsemblProtists:DDB0216734 GeneID:8617456 KEGG:ddi:DDB_G0271014
eggNOG:NOG283067 InParanoid:Q55CI7 OMA:STEEYNQ Uniprot:Q55CI7
Length = 595
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 35/84 (41%), Positives = 49/84 (58%)
Query: 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHP----QKAFAFVTYTTREGAEKAA 247
E +K L+VG + +TE +LR+ F++ I IK+ QK AFVT+ +E A +A
Sbjct: 44 EELK-LWVGSLPDEVTELELRE-FFSKYSINEIKLTENSSIQKQNAFVTFFDKESANRAR 101
Query: 248 EELSNKLVIKGLRLKLMWG--KPQ 269
EELS +L K RLK+ W KPQ
Sbjct: 102 EELSQQL-FKNQRLKINWASVKPQ 124
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 122 (48.0 bits), Expect = 0.00011, P = 0.00011
Identities = 34/116 (29%), Positives = 55/116 (47%)
Query: 187 EPPEDES-IKTLYVGGVDARITEQDLRDNFYAHGE--IESIKMHPQKAFAFVTYTTREGA 243
E PE+ S T+YVG + +T+ DL F+A G IE +++ K F FV Y T A
Sbjct: 256 ETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEA 315
Query: 244 EKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAAIAHSGMLPRSLIS 299
A + + + + ++K WG T P G +S+ + A G+ L++
Sbjct: 316 ALAIQMGNTQPYLFNRQIKCSWGNKPT--PPGTASNPLPPPAPAPVPGLSAADLLN 369
>UNIPROTKB|G4NC92 [details] [associations]
symbol:MGG_01109 "Nuclear cap-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CM001235
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:XP_003717825.1
ProteinModelPortal:G4NC92 EnsemblFungi:MGG_01109T0 GeneID:2674842
KEGG:mgr:MGG_01109 Uniprot:G4NC92
Length = 155
Score = 108 (43.1 bits), Expect = 0.00011, P = 0.00011
Identities = 36/113 (31%), Positives = 52/113 (46%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKM----HPQKA-----FAFVTYTTREGAEKA 246
TLYVGG+ A TE L D F GEI +KM +P+ A FA+V Y + A++A
Sbjct: 10 TLYVGGLPAAATEASLHDAFIPFGEIADVKMPKNDNPKSAETHRGFAYVEYEDADDAKEA 69
Query: 247 AEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAAIAHSGMLPRSLIS 299
+ + G +K+ KP EG S + A G L ++ +S
Sbjct: 70 MDNMDQSEFF-GRIIKVHAAKPPKSANEGLGS----KTAVWEQEGWLAKNAVS 117
>RGD|1305683 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISO]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISO;ISS] [GO:0071346 "cellular response to
interferon-gamma" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305683 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0005681 GO:GO:0003723
GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160 EMBL:AY325202
IPI:IPI00382222 RefSeq:NP_001041381.1 UniGene:Rn.202606
ProteinModelPortal:Q7TP47 SMR:Q7TP47 IntAct:Q7TP47 STRING:Q7TP47
PhosphoSite:Q7TP47 PRIDE:Q7TP47 Ensembl:ENSRNOT00000041655
GeneID:363113 KEGG:rno:363113 UCSC:RGD:1305683 HOGENOM:HOG000186082
NextBio:682484 ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 31/104 (29%), Positives = 59/104 (56%)
Query: 186 LEPPEDE---SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREG 242
+E P+ E +K L+V + +TE+ L +F G++E +K K +AF+ + R+G
Sbjct: 236 IEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKK--LKDYAFIHFDERDG 293
Query: 243 AEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAA 286
A KA EE++ K ++G +++++ KP Q+ + ++QAA
Sbjct: 294 AVKAMEEMNGK-DLEGENIEIVFAKPPDQK---RKERKAQRQAA 333
>UNIPROTKB|Q7TP47 [details] [associations]
symbol:Syncrip "Heterogeneous nuclear ribonucleoprotein Q"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1305683 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
GO:GO:0006397 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005681
GO:GO:0003723 GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160
EMBL:AY325202 IPI:IPI00382222 RefSeq:NP_001041381.1
UniGene:Rn.202606 ProteinModelPortal:Q7TP47 SMR:Q7TP47
IntAct:Q7TP47 STRING:Q7TP47 PhosphoSite:Q7TP47 PRIDE:Q7TP47
Ensembl:ENSRNOT00000041655 GeneID:363113 KEGG:rno:363113
UCSC:RGD:1305683 HOGENOM:HOG000186082 NextBio:682484
ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 31/104 (29%), Positives = 59/104 (56%)
Query: 186 LEPPEDE---SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREG 242
+E P+ E +K L+V + +TE+ L +F G++E +K K +AF+ + R+G
Sbjct: 236 IEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKK--LKDYAFIHFDERDG 293
Query: 243 AEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAA 286
A KA EE++ K ++G +++++ KP Q+ + ++QAA
Sbjct: 294 AVKAMEEMNGK-DLEGENIEIVFAKPPDQK---RKERKAQRQAA 333
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 98 (39.6 bits), Expect = 0.00018, P = 0.00018
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEI-------ESIKMHPQKAFAFVTYTTREGAEKAAE 248
TL+V G+ TE+ L F +G++ + I+ P K FA+VT++++E AEKA
Sbjct: 22 TLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRP-KGFAYVTFSSKEEAEKALL 80
Query: 249 ELSNKLV 255
EL+ +LV
Sbjct: 81 ELNAQLV 87
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 120 (47.3 bits), Expect = 0.00018, P = 0.00018
Identities = 32/116 (27%), Positives = 56/116 (48%)
Query: 187 EPPEDES-IKTLYVGGVDARITEQDLRDNFYAHGE--IESIKMHPQKAFAFVTYTTREGA 243
E PE+ + T+YVG + +++ DL +F++ G IE +++ K F FV Y+T A
Sbjct: 251 EAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHVEA 310
Query: 244 EKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAAIAHSGMLPRSLIS 299
A + + + G ++K WG T P G +S+ + A G L++
Sbjct: 311 ALAIQMGNTHSYLSGRQMKCSWGSKPT--PAGTASNPLPPPAPAPIPGFSASDLLA 364
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 108 (43.1 bits), Expect = 0.00018, P = 0.00018
Identities = 32/109 (29%), Positives = 50/109 (45%)
Query: 178 NKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKM----HPQK--A 231
N A S DE ++TLYVG + R E +R+ F HG + S+++ H K
Sbjct: 54 NTASSTSSNTIASDEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRG 113
Query: 232 FAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDE 280
F FV + + +KA L N + LK+ K + +R E + D+
Sbjct: 114 FGFVEMAS-DDLDKAISAL-NDTEFQQRTLKVREAKERPERTEDNNQDD 160
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 108 (43.1 bits), Expect = 0.00018, P = 0.00018
Identities = 32/109 (29%), Positives = 50/109 (45%)
Query: 178 NKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKM----HPQK--A 231
N A S DE ++TLYVG + R E +R+ F HG + S+++ H K
Sbjct: 54 NTASSTSSNTIASDEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRG 113
Query: 232 FAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDE 280
F FV + + +KA L N + LK+ K + +R E + D+
Sbjct: 114 FGFVEMAS-DDLDKAISAL-NDTEFQQRTLKVREAKERPERTEDNNQDD 160
>MGI|MGI:1891690 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IDA] [GO:0071346
"cellular response to interferon-gamma" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891690 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0071013 GO:GO:0008143
GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 CTD:10492 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM EMBL:AF093821 EMBL:AB035725
EMBL:AK034845 EMBL:AK077588 EMBL:AK078158 EMBL:BC004001
EMBL:BC041148 EMBL:BC050079 EMBL:BC055863 EMBL:BC058807
EMBL:BC080309 EMBL:BC108363 EMBL:AF408434 IPI:IPI00406117
IPI:IPI00406118 RefSeq:NP_062640.2 RefSeq:NP_062770.1
UniGene:Mm.260545 ProteinModelPortal:Q7TMK9 SMR:Q7TMK9
STRING:Q7TMK9 PhosphoSite:Q7TMK9 REPRODUCTION-2DPAGE:IPI00406117
PaxDb:Q7TMK9 PRIDE:Q7TMK9 Ensembl:ENSMUST00000069221
Ensembl:ENSMUST00000173801 Ensembl:ENSMUST00000174282 GeneID:56403
KEGG:mmu:56403 UCSC:uc009qyo.1 UCSC:uc009qyq.1 InParanoid:Q7TMK9
NextBio:312520 Bgee:Q7TMK9 Genevestigator:Q7TMK9
GermOnline:ENSMUSG00000032423 Uniprot:Q7TMK9
Length = 623
Score = 122 (48.0 bits), Expect = 0.00019, P = 0.00019
Identities = 31/104 (29%), Positives = 59/104 (56%)
Query: 186 LEPPEDE---SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREG 242
+E P+ E +K L+V + +TE+ L +F G++E +K K +AF+ + R+G
Sbjct: 326 IEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKK--LKDYAFIHFDERDG 383
Query: 243 AEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAA 286
A KA EE++ K ++G +++++ KP Q+ + ++QAA
Sbjct: 384 AVKAMEEMNGK-DLEGENIEIVFAKPPDQK---RKERKAQRQAA 423
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEEL 250
D + T++VGG+ ++E++L+ F GEI +K+ P K FV + R+ AE A +L
Sbjct: 299 DTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQL 358
Query: 251 SNKLVIKGLRLKLMWGKPQ 269
+ R++L WG+ Q
Sbjct: 359 QG-YPLGNSRIRLSWGRNQ 376
>DICTYBASE|DDB_G0276725 [details] [associations]
symbol:DDB_G0276725 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0276725 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000019 eggNOG:COG0724
RefSeq:XP_643007.1 ProteinModelPortal:Q550X7
EnsemblProtists:DDB0202911 GeneID:8620667 KEGG:ddi:DDB_G0276725
InParanoid:Q550X7 Uniprot:Q550X7
Length = 78
Score = 97 (39.2 bits), Expect = 0.00022, P = 0.00022
Identities = 24/77 (31%), Positives = 47/77 (61%)
Query: 194 IKT-LYVGGVDARITEQDLRDNFYAHGEIESIKMHPQK------AFAFVTYTTREGAEKA 246
+KT +YVGG+++ I+++ L+ F +GEI+S+ K +A++ Y +E A KA
Sbjct: 2 VKTSIYVGGLNSHISKEILKTKFSVYGEIQSLVFVKGKETGISEGYAYIEYNNKEDAVKA 61
Query: 247 AEELSNKLVIKGLRLKL 263
++L+++ +G L+L
Sbjct: 62 IDDLNDQ-PFEGNHLEL 77
>DICTYBASE|DDB_G0293252 [details] [associations]
symbol:DDB_G0293252 "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0293252 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AAFI02000200 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG314315 RefSeq:XP_629218.1
ProteinModelPortal:Q54C48 GeneID:8629100 KEGG:ddi:DDB_G0293252
InParanoid:Q54C48 OMA:FGKVENA Uniprot:Q54C48
Length = 691
Score = 121 (47.7 bits), Expect = 0.00028, P = 0.00028
Identities = 40/124 (32%), Positives = 60/124 (48%)
Query: 146 YRHEMPVTGELSQQNIKDRYYGVNDP--VALKLLNKAGEMPSLEPPEDESIKTLYVGGVD 203
Y H+ QQ + Y G N P +A NK G LEP K ++ G ++
Sbjct: 133 YHHQQQHQQHQQQQQ-QGGYMGGNGPNQMAPHYQNK-GAGGQLEPT-----KIVWAGNIN 185
Query: 204 ARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263
TE+++R F G +++IK+ P K AF+T+ A +A L N + +GL LKL
Sbjct: 186 PESTEEEVRHLFSQFGYLQAIKIIPNKQCAFITFADVNCAIQAQFNL-NGTIFRGLPLKL 244
Query: 264 MWGK 267
+GK
Sbjct: 245 GFGK 248
>SGD|S000001128 [details] [associations]
symbol:NAM8 "RNA binding protein, component of the U1 snRNP
protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
Length = 523
Score = 119 (46.9 bits), Expect = 0.00032, P = 0.00032
Identities = 29/90 (32%), Positives = 44/90 (48%)
Query: 182 EMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTRE 241
+ PSL D + T+++GG+ + +TE +LR F G I +K+ K FV Y R
Sbjct: 300 QQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRL 359
Query: 242 GAEKAAEELSNKLVIKGLRLKLMWGKPQTQ 271
AE A + I R++L WG+ Q
Sbjct: 360 SAEAAIAGMQG-FPIANSRVRLSWGRSAKQ 388
>RGD|1309982 [details] [associations]
symbol:Hnrnpc "heterogeneous nuclear ribonucleoprotein C
(C1/C2)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=ISO] [GO:0045120 "pronucleus" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309982 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:X16933 IPI:IPI00213609
PIR:S09017 UniGene:Rn.101929 ProteinModelPortal:P17132 SMR:P17132
STRING:P17132 PRIDE:P17132 UCSC:RGD:1309982 ArrayExpress:P17132
Genevestigator:P17132 GermOnline:ENSRNOG00000002292 Uniprot:P17132
Length = 158
Score = 106 (42.4 bits), Expect = 0.00033, P = 0.00033
Identities = 24/89 (26%), Positives = 46/89 (51%)
Query: 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESI------KMHPQKAFAFVTYTTREGAEK 245
E +K ++VGG+ E+ +R+ F GE+ESI K + ++ F F+T+ E +K
Sbjct: 31 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 90
Query: 246 AAEELSNKLVIKGLRLKLMWGKPQTQRPE 274
E+ + + + +K+ K Q Q+ +
Sbjct: 91 IMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 119
>UNIPROTKB|F6XIK8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:10492 KO:K13160 OMA:GNMATEH Ensembl:ENSCAFT00000004869
EMBL:AAEX03008501 RefSeq:XP_003431698.1 ProteinModelPortal:F6XIK8
GeneID:474986 KEGG:cfa:474986 Uniprot:F6XIK8
Length = 562
Score = 119 (46.9 bits), Expect = 0.00035, P = 0.00035
Identities = 31/104 (29%), Positives = 58/104 (55%)
Query: 186 LEPPEDE---SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREG 242
+E P+ E +K L+V + +TE+ L F G++E +K K +AF+ + R+G
Sbjct: 326 IEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK--LKDYAFIHFDERDG 383
Query: 243 AEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAA 286
A KA EE++ K ++G +++++ KP Q+ + ++QAA
Sbjct: 384 AVKAMEEMNGK-DLEGENIEIVFAKPPDQK---RKERKAQRQAA 423
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 118 (46.6 bits), Expect = 0.00036, P = 0.00036
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 176 LLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKA---- 231
L++ G PE + LYVGG+DAR+TE LR F G ++++K+ P K
Sbjct: 67 LMSPGGTFTRRTAPEPNK-RALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGY 125
Query: 232 -FAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265
+ FV Y A++A + L+ + V + +++ W
Sbjct: 126 NYGFVEYDDPGAADRAMQTLNGRRVHQS-EIRVNW 159
>UNIPROTKB|F1NWI9 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
ArrayExpress:F1NWI9 Uniprot:F1NWI9
Length = 622
Score = 119 (46.9 bits), Expect = 0.00041, P = 0.00041
Identities = 31/104 (29%), Positives = 58/104 (55%)
Query: 186 LEPPEDE---SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREG 242
+E P+ E +K L+V + +TE+ L F G++E +K K +AF+ + R+G
Sbjct: 325 IEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK--LKDYAFIHFDERDG 382
Query: 243 AEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAA 286
A KA EE++ K ++G +++++ KP Q+ + ++QAA
Sbjct: 383 AVKAMEEMNGK-DLEGENIEIVFAKPPDQK---RKERKAQRQAA 422
>UNIPROTKB|O60506 [details] [associations]
symbol:SYNCRIP "Heterogeneous nuclear ribonucleoprotein Q"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0017148 "negative regulation of translation"
evidence=IDA;IMP] [GO:0071346 "cellular response to
interferon-gamma" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005783 GO:GO:0019048 GO:GO:0005654 GO:GO:0017148
GO:GO:0000166 EMBL:CH471051 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0071346 GO:GO:0000398 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
EMBL:AF155568 EMBL:AF037448 EMBL:AY034481 EMBL:AY034482
EMBL:AY034483 EMBL:AK222776 EMBL:AL136082 EMBL:BC015575
EMBL:BC032643 EMBL:BC040844 IPI:IPI00018140 IPI:IPI00402182
IPI:IPI00402183 IPI:IPI00402184 IPI:IPI00402185
RefSeq:NP_001153145.1 RefSeq:NP_001153146.1 RefSeq:NP_001153147.1
RefSeq:NP_001153148.1 RefSeq:NP_001153149.1 RefSeq:NP_001240700.1
RefSeq:NP_006363.4 UniGene:Hs.571177 PDB:2DGU PDBsum:2DGU
ProteinModelPortal:O60506 SMR:O60506 IntAct:O60506
MINT:MINT-2796763 STRING:O60506 PhosphoSite:O60506 PaxDb:O60506
PRIDE:O60506 DNASU:10492 Ensembl:ENST00000355238
Ensembl:ENST00000369622 GeneID:10492 KEGG:hsa:10492 UCSC:uc003pku.3
UCSC:uc003pkv.3 UCSC:uc003pkw.3 UCSC:uc003pkx.3 UCSC:uc003pkz.2
CTD:10492 GeneCards:GC06M086267 HGNC:HGNC:16918 HPA:CAB010895
neXtProt:NX_O60506 PharmGKB:PA134985065 InParanoid:O60506 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM PhylomeDB:O60506 ChiTaRS:SYNCRIP
EvolutionaryTrace:O60506 GenomeRNAi:10492 NextBio:39814
ArrayExpress:O60506 Bgee:O60506 CleanEx:HS_SYNCRIP
Genevestigator:O60506 GermOnline:ENSG00000135316 Uniprot:O60506
Length = 623
Score = 119 (46.9 bits), Expect = 0.00041, P = 0.00041
Identities = 31/104 (29%), Positives = 58/104 (55%)
Query: 186 LEPPEDE---SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREG 242
+E P+ E +K L+V + +TE+ L F G++E +K K +AF+ + R+G
Sbjct: 326 IEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK--LKDYAFIHFDERDG 383
Query: 243 AEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAA 286
A KA EE++ K ++G +++++ KP Q+ + ++QAA
Sbjct: 384 AVKAMEEMNGK-DLEGENIEIVFAKPPDQK---RKERKAQRQAA 423
>UNIPROTKB|F2Z5D4 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:CU076072 Ensembl:ENSSSCT00000004748 Uniprot:F2Z5D4
Length = 627
Score = 119 (46.9 bits), Expect = 0.00041, P = 0.00041
Identities = 31/104 (29%), Positives = 58/104 (55%)
Query: 186 LEPPEDE---SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREG 242
+E P+ E +K L+V + +TE+ L F G++E +K K +AF+ + R+G
Sbjct: 330 IEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK--LKDYAFIHFDERDG 387
Query: 243 AEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAA 286
A KA EE++ K ++G +++++ KP Q+ + ++QAA
Sbjct: 388 AVKAMEEMNGK-DLEGENIEIVFAKPPDQK---RKERKAQRQAA 427
>UNIPROTKB|F1MCT8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:DAAA02026516 EMBL:DAAA02026515 IPI:IPI00721347
Ensembl:ENSBTAT00000008774 Uniprot:F1MCT8
Length = 638
Score = 119 (46.9 bits), Expect = 0.00042, P = 0.00042
Identities = 31/104 (29%), Positives = 58/104 (55%)
Query: 186 LEPPEDE---SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREG 242
+E P+ E +K L+V + +TE+ L F G++E +K K +AF+ + R+G
Sbjct: 341 IEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK--LKDYAFIHFDERDG 398
Query: 243 AEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAA 286
A KA EE++ K ++G +++++ KP Q+ + ++QAA
Sbjct: 399 AVKAMEEMNGK-DLEGENIEIVFAKPPDQK---RKERKAQRQAA 438
>UNIPROTKB|E9PKU1 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0007286 "spermatid
development" evidence=IEA] [GO:0031369 "translation initiation
factor binding" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007286 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040018
GO:GO:0003676 EMBL:AC090559 HGNC:HGNC:2549 ChiTaRS:CELF1
GO:GO:0006376 IPI:IPI00982591 ProteinModelPortal:E9PKU1 SMR:E9PKU1
Ensembl:ENST00000528434 ArrayExpress:E9PKU1 Bgee:E9PKU1
Uniprot:E9PKU1
Length = 114
Score = 94 (38.1 bits), Expect = 0.00048, P = 0.00048
Identities = 32/98 (32%), Positives = 52/98 (53%)
Query: 169 NDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKM-- 226
+ PV+ K+ N G + + P+ ++IK ++VG V +E+DLR+ F +G + I +
Sbjct: 21 SSPVSKKM-N--GTLDHPDQPDLDAIK-MFVGQVPRTWSEKDLRELFEQYGAVYEINVLR 76
Query: 227 -----HPQ-KAFAFVTYTTREGAEKAAEELSNKLVIKG 258
PQ K FVT+ TR+ A +A L N V+ G
Sbjct: 77 DRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG 114
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 116 (45.9 bits), Expect = 0.00051, P = 0.00051
Identities = 29/101 (28%), Positives = 50/101 (49%)
Query: 182 EMPSLEPPEDE-SIKTLYVGGVDARITEQDLRDNFYAHGE--IESIKMHPQKAFAFVTYT 238
E+ + + PE+ T+YVG + +T+ DL FY G IE +++ K F FV Y
Sbjct: 259 ELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYN 318
Query: 239 TREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSD 279
T + A A + + + + +++ WG T P G +S+
Sbjct: 319 THDEAALAIQMGNAQPFLFSRQIRCSWGNKPT--PSGTASN 357
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 93 (37.8 bits), Expect = 0.00061, P = 0.00061
Identities = 24/84 (28%), Positives = 44/84 (52%)
Query: 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKM------HPQKAFAFVTYTTREGA 243
++ + L+VGG+D I E+ L D F + G+I +I++ + FAFV Y + A
Sbjct: 3 DNNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDA 62
Query: 244 EKAAEELSNKLVIKGLRLKLMWGK 267
+ A ++N + G R+ + + K
Sbjct: 63 KHALYNMNN-FELNGKRIHVNYSK 85
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 93 (37.8 bits), Expect = 0.00061, P = 0.00061
Identities = 24/84 (28%), Positives = 44/84 (52%)
Query: 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKM------HPQKAFAFVTYTTREGA 243
++ + L+VGG+D I E+ L D F + G+I +I++ + FAFV Y + A
Sbjct: 3 DNNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDA 62
Query: 244 EKAAEELSNKLVIKGLRLKLMWGK 267
+ A ++N + G R+ + + K
Sbjct: 63 KHALYNMNN-FELNGKRIHVNYSK 85
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 113 (44.8 bits), Expect = 0.00064, P = 0.00064
Identities = 25/89 (28%), Positives = 48/89 (53%)
Query: 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESI------KMHPQKAFAFVTYTTREGAEK 245
E +K ++VGG+ E+ +R+ F A+GE+ESI K + ++ F F+T+ E +K
Sbjct: 136 EPVKKIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKK 195
Query: 246 AAEELSNKLVIKGLRLKLMWGKPQTQRPE 274
E+ + + + +K+ K Q Q+ +
Sbjct: 196 IMEKKYHNIGLSKCEVKVAMSKEQYQQQQ 224
>UNIPROTKB|F1NW30 [details] [associations]
symbol:Gga.54017 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0043175 "RNA polymerase core enzyme
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:AADN02025403
EMBL:AADN02025404 IPI:IPI00579015 Ensembl:ENSGALT00000022182
Uniprot:F1NW30
Length = 1288
Score = 120 (47.3 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255
TL+VG VD + T+QDL + F G+IESI M P + A+V R+ A +A ++LS+
Sbjct: 479 TLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSY 538
Query: 256 IKGLRL-KLMW 265
G ++ K+ W
Sbjct: 539 KIGSKIIKIAW 549
Score = 46 (21.3 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 319 YFNIPPPPQQDRAYYPSMDP 338
Y IPPPP ++ PS P
Sbjct: 672 YSAIPPPPFLRASFNPSQPP 691
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 118 (46.6 bits), Expect = 0.00073, P = 0.00073
Identities = 31/100 (31%), Positives = 52/100 (52%)
Query: 196 TLYVGGVDARIT---EQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSN 252
T+YVGGV++ +T E+ L+ F +G I+ I++ K +AFV ++T+E A A + N
Sbjct: 566 TVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVFKDKGYAFVRFSTKEAATHAIVGVHN 625
Query: 253 KLVIKGLRLKLMWGKPQTQRPEGES-SDEVRQQAAIAHSG 291
I +K WGK ++ + + AA A +G
Sbjct: 626 T-EINAQPVKCSWGKESGDPNNAQTIATQALNSAAAAAAG 664
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 112 (44.5 bits), Expect = 0.00077, P = 0.00077
Identities = 36/117 (30%), Positives = 61/117 (52%)
Query: 175 KLLN--KAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESI------KM 226
KL++ +A + EPP K ++VGG+ +E+ +++ F A GEIE+I K
Sbjct: 98 KLIDPKRAKALKGKEPP-----KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKT 152
Query: 227 HPQKAFAFVTYTTREGAEKAAEEL-----SNKLVIKGLRLKLMWGKPQTQRPEGESS 278
+ ++ F F+TYT E +K E S K IK + K ++ + Q Q+ G+S+
Sbjct: 153 NERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGKSN 209
>UNIPROTKB|E9PSH0 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 EMBL:AC090559
HGNC:HGNC:2549 ChiTaRS:CELF1 GO:GO:0006376 IPI:IPI00984001
ProteinModelPortal:E9PSH0 SMR:E9PSH0 Ensembl:ENST00000530151
ArrayExpress:E9PSH0 Bgee:E9PSH0 Uniprot:E9PSH0
Length = 95
Score = 92 (37.4 bits), Expect = 0.00079, P = 0.00079
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 181 GEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKM-------HPQ-KAF 232
G + + P+ ++IK ++VG V +E+DLR+ F +G + I + PQ K
Sbjct: 3 GTLDHPDQPDLDAIK-MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGC 61
Query: 233 AFVTYTTREGAEKAAEELSNKLVIKGL 259
FVT+ TR+ A +A L N V+ G+
Sbjct: 62 CFVTFYTRKAALEAQNALHNMKVLPGM 88
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 115 (45.5 bits), Expect = 0.00083, P = 0.00083
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKA----FAFVTYTTREGAEKAAEE 249
+K LYV + + + L++ F HGE+ I P K F FV Y R A KA ++
Sbjct: 291 VKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKD 350
Query: 250 LSNKLVIKGLRLKLMWGKPQTQRPEGESS 278
+ + + G L+++ KPQ +R SS
Sbjct: 351 -TERYEVNGQPLEVVLAKPQAERKHDPSS 378
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 110 (43.8 bits), Expect = 0.00091, P = 0.00091
Identities = 25/89 (28%), Positives = 47/89 (52%)
Query: 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESI------KMHPQKAFAFVTYTTREGAEK 245
E +K ++VGG+ E+ +R+ F A GE+ESI K + ++ F F+T+ E +K
Sbjct: 81 EPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 140
Query: 246 AAEELSNKLVIKGLRLKLMWGKPQTQRPE 274
E+ + + + +K+ K Q Q+ +
Sbjct: 141 IMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 169
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 110 (43.8 bits), Expect = 0.00092, P = 0.00092
Identities = 25/89 (28%), Positives = 47/89 (52%)
Query: 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESI------KMHPQKAFAFVTYTTREGAEK 245
E +K ++VGG+ E+ +R+ F A GE+ESI K + ++ F F+T+ E +K
Sbjct: 82 EPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 141
Query: 246 AAEELSNKLVIKGLRLKLMWGKPQTQRPE 274
E+ + + + +K+ K Q Q+ +
Sbjct: 142 IMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 170
>FB|FBgn0011305 [details] [associations]
symbol:Rsf1 "Repressor splicing factor 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;TAS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=TAS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048025 CTD:51773 EMBL:L34935 EMBL:L23835
RefSeq:NP_477001.2 UniGene:Dm.4180 ProteinModelPortal:Q24491
SMR:Q24491 IntAct:Q24491 MINT:MINT-277287 STRING:Q24491
PaxDb:Q24491 PRIDE:Q24491 GeneID:34370 KEGG:dme:Dmel_CG5655
FlyBase:FBgn0011305 eggNOG:NOG255799 InParanoid:Q24491
OrthoDB:EOG4QJQ4W GenomeRNAi:34370 NextBio:788156 Bgee:Q24491
GermOnline:CG5655 Uniprot:Q24491
Length = 197
Score = 107 (42.7 bits), Expect = 0.00093, P = 0.00093
Identities = 28/88 (31%), Positives = 50/88 (56%)
Query: 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIES--IKMHPQKAFAFVTYTTREGAEKAAE 248
D+ +YVG + ++ + DL F +G++ S I +P FAFV + R+ AEKA +
Sbjct: 3 DQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPP-GFAFVEFEHRDDAEKACD 61
Query: 249 ELS-NKLVIKGLRLKLMWGKPQTQRPEG 275
L+ ++L+ LR+++ G+P+ R G
Sbjct: 62 ILNGSELLGSQLRVEISKGRPRQGRRGG 89
>TAIR|locus:2013583 [details] [associations]
symbol:ML5 "MEI2-like protein 5" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0045836 "positive regulation of meiosis"
evidence=IMP] [GO:0045927 "positive regulation of growth"
evidence=IMP] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0007126 GO:GO:0045927
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG262869
HOGENOM:HOG000030212 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:AC068667 EMBL:AY062613 EMBL:AY070368 EMBL:AY091327
EMBL:AK230306 IPI:IPI00540335 PIR:F86416 RefSeq:NP_174233.2
RefSeq:NP_849727.1 UniGene:At.27439 HSSP:P19339
ProteinModelPortal:Q8VWF5 SMR:Q8VWF5 PaxDb:Q8VWF5 PRIDE:Q8VWF5
EnsemblPlants:AT1G29400.1 EnsemblPlants:AT1G29400.2 GeneID:839816
KEGG:ath:AT1G29400 TAIR:At1g29400 InParanoid:Q8VWF5 OMA:SPMANSP
PhylomeDB:Q8VWF5 ProtClustDB:CLSN2680301 Genevestigator:Q8VWF5
Uniprot:Q8VWF5
Length = 800
Score = 117 (46.2 bits), Expect = 0.00094, P = 0.00094
Identities = 36/102 (35%), Positives = 51/102 (50%)
Query: 169 NDPVALKLLNKAGEMPSLEPPE-DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMH 227
N P+ + L+ +P P E D + TL V +D I+ DL F AHGEI+ I+
Sbjct: 226 NKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRET 285
Query: 228 PQKAF-AFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKP 268
P K FV + GAE A + L N+ I G R+K+ +P
Sbjct: 286 PHKRHHKFVEFYDVRGAEAALKAL-NRCEIAGKRIKVEPSRP 326
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 112 (44.5 bits), Expect = 0.00096, P = 0.00096
Identities = 36/117 (30%), Positives = 61/117 (52%)
Query: 175 KLLN--KAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESI------KM 226
KL++ +A + EPP K ++VGG+ +E+ +++ F A GEIE+I K
Sbjct: 134 KLIDPKRAKALKGKEPP-----KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKT 188
Query: 227 HPQKAFAFVTYTTREGAEKAAEEL-----SNKLVIKGLRLKLMWGKPQTQRPEGESS 278
+ ++ F F+TYT E +K E S K IK + K ++ + Q Q+ G+S+
Sbjct: 189 NERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGKSN 245
>ZFIN|ZDB-GENE-030131-3104 [details] [associations]
symbol:syncripl "synaptotagmin binding,
cytoplasmic RNA interacting protein, like" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-3104
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GO:GO:0003676 HSSP:P09651
EMBL:BC046902 IPI:IPI00513002 RefSeq:NP_955973.1 UniGene:Dr.78854
ProteinModelPortal:Q802X5 SMR:Q802X5 STRING:Q802X5 GeneID:324384
KEGG:dre:324384 CTD:324384 InParanoid:Q802X5 NextBio:20808747
Uniprot:Q802X5
Length = 560
Score = 115 (45.5 bits), Expect = 0.00098, P = 0.00098
Identities = 31/104 (29%), Positives = 57/104 (54%)
Query: 186 LEPPEDE---SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREG 242
+E P+ E +K L+V + + +TE+ L F G++E +K K +AF+ + R+G
Sbjct: 327 IEDPDPEVMAKVKVLFVRNLASTVTEELLEKTFCQFGKLERVKK--LKDYAFIHFEERDG 384
Query: 243 AEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAA 286
A KA EL K ++G +++++ KP Q+ + ++QAA
Sbjct: 385 AVKALAELHGK-DLEGEPIEIVFAKPPDQK---RKERKAQRQAA 424
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 344 325 0.00087 116 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 130
No. of states in DFA: 612 (65 KB)
Total size of DFA: 230 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.83u 0.36s 27.19t Elapsed: 00:00:02
Total cpu time: 26.85u 0.36s 27.21t Elapsed: 00:00:02
Start: Tue May 21 00:57:37 2013 End: Tue May 21 00:57:39 2013
WARNINGS ISSUED: 1