Query 048750
Match_columns 344
No_of_seqs 454 out of 2684
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 12:44:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0153 Predicted RNA-binding 100.0 6.8E-95 1.5E-99 661.7 21.6 264 3-268 36-302 (377)
2 KOG0148 Apoptosis-promoting RN 99.7 5.7E-16 1.2E-20 138.9 13.3 82 190-272 160-241 (321)
3 PLN03134 glycine-rich RNA-bind 99.6 3.3E-15 7.1E-20 126.4 12.9 79 192-271 32-116 (144)
4 TIGR01628 PABP-1234 polyadenyl 99.5 4.3E-14 9.2E-19 144.9 13.6 79 192-271 283-366 (562)
5 KOG0122 Translation initiation 99.5 4.5E-14 9.7E-19 125.2 11.3 79 190-269 185-269 (270)
6 KOG0132 RNA polymerase II C-te 99.5 1E-13 2.2E-18 139.3 13.3 79 194-273 421-499 (894)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.4E-13 3E-18 132.7 12.6 79 192-271 267-351 (352)
8 KOG0149 Predicted RNA-binding 99.5 7.1E-14 1.5E-18 123.4 9.3 78 189-268 7-90 (247)
9 PF00076 RRM_1: RNA recognitio 99.5 2.6E-13 5.7E-18 99.3 8.1 65 197-262 1-70 (70)
10 TIGR01659 sex-lethal sex-letha 99.5 3.5E-13 7.6E-18 129.6 10.7 80 190-270 103-188 (346)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 3.8E-13 8.2E-18 129.7 10.7 77 193-270 2-84 (352)
12 KOG0125 Ataxin 2-binding prote 99.4 3E-13 6.5E-18 124.4 9.3 80 190-270 92-175 (376)
13 TIGR01645 half-pint poly-U bin 99.4 1.8E-12 3.8E-17 131.7 15.6 78 192-270 202-285 (612)
14 PLN03120 nucleic acid binding 99.4 1.1E-12 2.5E-17 119.3 10.4 74 194-269 4-80 (260)
15 KOG0107 Alternative splicing f 99.4 1.2E-12 2.7E-17 110.8 8.0 78 193-271 9-87 (195)
16 KOG0144 RNA-binding protein CU 99.4 9.2E-13 2E-17 125.0 7.0 82 194-275 124-212 (510)
17 TIGR01659 sex-lethal sex-letha 99.3 5.2E-12 1.1E-16 121.6 10.9 78 193-271 192-277 (346)
18 TIGR01648 hnRNP-R-Q heterogene 99.3 6.5E-12 1.4E-16 127.3 11.2 77 193-272 232-310 (578)
19 PF14259 RRM_6: RNA recognitio 99.3 8.4E-12 1.8E-16 91.9 8.9 65 197-262 1-70 (70)
20 PLN03213 repressor of silencin 99.3 6.3E-12 1.4E-16 121.0 9.6 77 192-269 8-88 (759)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 9.9E-12 2.1E-16 125.1 11.6 77 194-270 2-79 (481)
22 KOG4207 Predicted splicing fac 99.3 3.2E-12 7E-17 110.8 6.7 79 188-267 7-91 (256)
23 KOG0117 Heterogeneous nuclear 99.3 1.7E-11 3.7E-16 116.9 11.5 112 147-275 226-337 (506)
24 KOG0121 Nuclear cap-binding pr 99.3 5E-12 1.1E-16 101.8 6.5 75 192-267 34-114 (153)
25 PF13893 RRM_5: RNA recognitio 99.3 2.5E-11 5.4E-16 85.7 9.1 55 211-266 1-56 (56)
26 smart00362 RRM_2 RNA recogniti 99.3 2.5E-11 5.5E-16 88.0 9.4 68 196-264 1-72 (72)
27 TIGR01628 PABP-1234 polyadenyl 99.3 1.6E-11 3.4E-16 126.0 10.9 74 195-269 1-80 (562)
28 KOG0111 Cyclophilin-type pepti 99.2 6.2E-12 1.4E-16 110.0 5.2 82 193-275 9-96 (298)
29 TIGR01645 half-pint poly-U bin 99.2 2.5E-11 5.4E-16 123.4 10.1 74 193-267 106-185 (612)
30 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 4.7E-11 1E-15 120.2 11.9 79 191-270 272-352 (481)
31 PLN03121 nucleic acid binding 99.2 5.2E-11 1.1E-15 106.9 10.1 73 193-267 4-79 (243)
32 KOG0148 Apoptosis-promoting RN 99.2 2.1E-11 4.6E-16 109.7 7.4 77 193-270 61-143 (321)
33 KOG0144 RNA-binding protein CU 99.2 2.4E-11 5.2E-16 115.5 8.1 82 191-272 31-120 (510)
34 KOG0145 RNA-binding protein EL 99.2 4.4E-11 9.6E-16 107.1 8.6 81 190-271 37-123 (360)
35 KOG0113 U1 small nuclear ribon 99.2 7E-11 1.5E-15 107.7 9.8 79 192-271 99-183 (335)
36 KOG0105 Alternative splicing f 99.2 4.8E-11 1E-15 101.9 7.6 78 192-270 4-84 (241)
37 TIGR01622 SF-CC1 splicing fact 99.2 1E-10 2.2E-15 116.8 11.3 74 194-268 186-265 (457)
38 TIGR01648 hnRNP-R-Q heterogene 99.2 8.3E-11 1.8E-15 119.3 10.3 75 193-267 57-136 (578)
39 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.8E-10 4E-15 116.5 12.2 79 192-271 293-377 (509)
40 KOG0114 Predicted RNA-binding 99.2 1.4E-10 3.1E-15 90.2 8.6 78 193-271 17-97 (124)
41 cd00590 RRM RRM (RNA recogniti 99.2 3E-10 6.5E-15 82.7 9.6 69 196-265 1-74 (74)
42 TIGR01622 SF-CC1 splicing fact 99.1 3.3E-10 7.1E-15 113.2 10.7 76 191-268 86-167 (457)
43 COG0724 RNA-binding proteins ( 99.1 4E-10 8.8E-15 102.4 9.9 74 194-268 115-194 (306)
44 smart00360 RRM RNA recognition 99.1 5.7E-10 1.2E-14 80.3 8.2 65 199-264 1-71 (71)
45 KOG0130 RNA-binding protein RB 99.1 3.2E-10 7E-15 92.3 6.8 77 193-270 71-153 (170)
46 KOG0146 RNA-binding protein ET 99.0 1E-09 2.2E-14 98.7 9.4 80 193-272 18-104 (371)
47 KOG0109 RNA-binding protein LA 99.0 3.4E-10 7.4E-15 103.0 6.4 72 195-269 3-74 (346)
48 KOG0131 Splicing factor 3b, su 99.0 4.2E-10 9.1E-15 96.1 5.9 75 192-267 7-87 (203)
49 KOG0126 Predicted RNA-binding 99.0 1.7E-10 3.7E-15 98.4 2.4 76 192-268 33-114 (219)
50 KOG0108 mRNA cleavage and poly 99.0 8.8E-10 1.9E-14 108.1 7.7 77 195-272 19-101 (435)
51 KOG0117 Heterogeneous nuclear 99.0 2.2E-09 4.7E-14 102.8 10.0 76 192-267 81-162 (506)
52 TIGR01642 U2AF_lg U2 snRNP aux 99.0 2.2E-09 4.7E-14 108.7 9.6 77 189-267 170-258 (509)
53 KOG0145 RNA-binding protein EL 99.0 3.9E-09 8.4E-14 94.8 10.0 79 189-268 273-357 (360)
54 KOG0127 Nucleolar protein fibr 98.9 3.2E-09 6.9E-14 103.8 8.3 77 194-271 117-198 (678)
55 KOG0131 Splicing factor 3b, su 98.9 4.1E-09 8.9E-14 90.1 7.3 84 194-278 96-186 (203)
56 KOG0151 Predicted splicing reg 98.9 6.6E-09 1.4E-13 104.2 9.7 78 191-269 171-257 (877)
57 KOG4206 Spliceosomal protein s 98.9 6.1E-09 1.3E-13 92.0 8.3 76 194-270 9-91 (221)
58 KOG0127 Nucleolar protein fibr 98.9 8.2E-09 1.8E-13 101.0 9.2 80 191-270 289-379 (678)
59 KOG0146 RNA-binding protein ET 98.8 4.2E-09 9.1E-14 94.9 5.2 81 190-271 281-367 (371)
60 KOG0124 Polypyrimidine tract-b 98.8 3.1E-09 6.8E-14 99.3 4.4 71 194-265 113-189 (544)
61 smart00361 RRM_1 RNA recogniti 98.8 1.8E-08 3.9E-13 74.5 7.5 56 208-264 2-70 (70)
62 KOG0109 RNA-binding protein LA 98.8 8.5E-09 1.8E-13 94.0 6.1 79 192-273 76-154 (346)
63 KOG4212 RNA-binding protein hn 98.8 2.9E-08 6.3E-13 94.8 9.0 76 192-268 42-123 (608)
64 KOG0147 Transcriptional coacti 98.8 1E-08 2.3E-13 100.5 6.1 73 195-268 279-357 (549)
65 KOG0123 Polyadenylate-binding 98.7 2.9E-08 6.2E-13 96.4 7.9 80 195-276 77-160 (369)
66 KOG0415 Predicted peptidyl pro 98.7 2.6E-08 5.6E-13 93.0 6.3 77 193-270 238-320 (479)
67 KOG4208 Nucleolar RNA-binding 98.7 6.2E-08 1.4E-12 84.5 7.8 83 186-269 41-130 (214)
68 KOG0123 Polyadenylate-binding 98.6 7.1E-08 1.5E-12 93.6 7.9 73 195-271 2-77 (369)
69 KOG0124 Polypyrimidine tract-b 98.6 2.4E-07 5.2E-12 86.9 9.3 76 191-267 207-288 (544)
70 KOG1457 RNA binding protein (c 98.6 6.3E-07 1.4E-11 79.1 10.9 83 192-275 32-124 (284)
71 KOG0110 RNA-binding protein (R 98.5 2.1E-07 4.6E-12 93.8 8.3 71 196-267 517-596 (725)
72 KOG0110 RNA-binding protein (R 98.5 1.1E-07 2.4E-12 95.9 5.7 82 189-271 608-695 (725)
73 KOG2202 U2 snRNP splicing fact 98.5 5.2E-08 1.1E-12 87.7 2.6 122 126-267 14-146 (260)
74 KOG4661 Hsp27-ERE-TATA-binding 98.4 4.7E-07 1E-11 89.2 7.1 77 193-270 404-486 (940)
75 KOG4205 RNA-binding protein mu 98.4 2.8E-07 6.2E-12 86.9 5.3 79 193-273 5-89 (311)
76 KOG0116 RasGAP SH3 binding pro 98.4 6.4E-07 1.4E-11 87.6 7.6 78 193-272 287-370 (419)
77 KOG4212 RNA-binding protein hn 98.4 8.1E-07 1.8E-11 85.1 6.7 76 190-266 532-608 (608)
78 KOG0533 RRM motif-containing p 98.3 2E-06 4.4E-11 78.3 8.2 79 191-270 80-163 (243)
79 KOG0106 Alternative splicing f 98.3 5.5E-07 1.2E-11 80.3 4.4 72 195-269 2-73 (216)
80 KOG4205 RNA-binding protein mu 98.3 1.2E-06 2.6E-11 82.7 6.3 79 193-273 96-180 (311)
81 KOG2135 Proteins containing th 98.3 9.8E-07 2.1E-11 85.4 5.1 77 192-270 370-447 (526)
82 KOG4660 Protein Mei2, essentia 98.2 1.3E-06 2.8E-11 86.2 4.6 73 189-262 70-143 (549)
83 KOG1548 Transcription elongati 98.1 1.6E-05 3.4E-10 74.5 8.5 83 186-269 126-221 (382)
84 KOG4454 RNA binding protein (R 98.0 3E-06 6.4E-11 74.7 2.3 74 192-266 7-84 (267)
85 KOG4209 Splicing factor RNPS1, 98.0 1E-05 2.2E-10 73.7 5.6 77 191-269 98-180 (231)
86 KOG1190 Polypyrimidine tract-b 98.0 4.6E-05 1E-09 72.8 9.9 78 194-272 297-376 (492)
87 PF14605 Nup35_RRM_2: Nup53/35 97.9 3.1E-05 6.8E-10 53.9 5.5 52 195-247 2-53 (53)
88 PF04059 RRM_2: RNA recognitio 97.9 7.6E-05 1.7E-09 58.6 8.0 74 195-269 2-87 (97)
89 PF11608 Limkain-b1: Limkain b 97.9 6.2E-05 1.3E-09 56.9 6.8 70 194-268 2-76 (90)
90 PF08777 RRM_3: RNA binding mo 97.8 5.6E-05 1.2E-09 60.4 7.0 69 196-264 3-75 (105)
91 KOG0226 RNA-binding proteins [ 97.7 2.8E-05 6.1E-10 70.1 4.2 75 190-265 186-266 (290)
92 KOG4206 Spliceosomal protein s 97.6 0.00028 6E-09 62.8 8.1 76 191-267 143-220 (221)
93 KOG1457 RNA binding protein (c 97.5 0.0001 2.2E-09 65.4 4.3 62 192-253 208-271 (284)
94 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00044 9.6E-09 54.6 7.0 73 193-268 5-91 (100)
95 KOG0106 Alternative splicing f 97.5 9.3E-05 2E-09 66.2 3.3 72 191-265 96-167 (216)
96 KOG1456 Heterogeneous nuclear 97.4 0.0032 6.9E-08 59.9 13.2 81 193-273 119-203 (494)
97 COG5175 MOT2 Transcriptional r 97.4 0.00033 7.2E-09 65.6 6.2 73 194-267 114-201 (480)
98 KOG4849 mRNA cleavage factor I 97.4 0.001 2.2E-08 62.6 9.0 66 194-260 80-153 (498)
99 smart00356 ZnF_C3H1 zinc finge 97.3 0.00021 4.7E-09 42.2 2.4 24 126-149 3-26 (27)
100 KOG1365 RNA-binding protein Fu 97.2 0.002 4.2E-08 61.5 9.6 75 191-266 277-359 (508)
101 PF00642 zf-CCCH: Zinc finger 97.0 0.00013 2.9E-09 43.4 -0.3 23 127-149 3-26 (27)
102 KOG1190 Polypyrimidine tract-b 97.0 0.0022 4.7E-08 61.7 7.6 77 193-269 149-228 (492)
103 KOG4211 Splicing factor hnRNP- 97.0 0.0032 6.9E-08 61.9 8.3 75 193-270 9-87 (510)
104 KOG1855 Predicted RNA-binding 96.9 0.00098 2.1E-08 64.3 4.1 60 192-251 229-307 (484)
105 KOG2193 IGF-II mRNA-binding pr 96.8 0.00068 1.5E-08 65.3 2.5 79 195-273 2-80 (584)
106 KOG1548 Transcription elongati 96.8 0.0045 9.7E-08 58.4 7.8 78 192-270 263-353 (382)
107 KOG0112 Large RNA-binding prot 96.8 0.0018 4E-08 67.6 5.2 86 185-271 446-533 (975)
108 KOG0147 Transcriptional coacti 96.7 0.0032 6.9E-08 62.6 6.1 58 209-267 468-526 (549)
109 KOG0120 Splicing factor U2AF, 96.7 0.0016 3.5E-08 65.1 3.9 81 193-274 288-374 (500)
110 KOG4211 Splicing factor hnRNP- 96.6 0.0075 1.6E-07 59.3 7.7 73 193-267 102-180 (510)
111 KOG4676 Splicing factor, argin 96.6 0.0031 6.7E-08 60.3 5.0 71 196-267 9-88 (479)
112 KOG1924 RhoA GTPase effector D 96.5 0.0042 9.1E-08 64.2 5.7 25 43-69 311-335 (1102)
113 KOG0120 Splicing factor U2AF, 96.5 0.0077 1.7E-07 60.3 7.4 60 209-269 424-492 (500)
114 KOG4210 Nuclear localization s 96.5 0.0019 4.1E-08 60.7 3.0 77 194-272 185-267 (285)
115 KOG0105 Alternative splicing f 96.4 0.015 3.2E-07 50.5 7.8 71 182-253 103-173 (241)
116 KOG2416 Acinus (induces apopto 96.2 0.0063 1.4E-07 61.1 5.2 80 191-270 441-523 (718)
117 PF08952 DUF1866: Domain of un 96.2 0.036 7.9E-07 46.6 8.6 57 210-270 52-108 (146)
118 KOG3152 TBP-binding protein, a 96.1 0.0031 6.7E-08 57.2 2.0 67 193-260 73-157 (278)
119 KOG1456 Heterogeneous nuclear 96.1 0.037 8.1E-07 52.9 9.2 77 192-269 285-363 (494)
120 PF15023 DUF4523: Protein of u 96.0 0.032 6.9E-07 46.5 7.5 75 191-268 83-161 (166)
121 KOG1995 Conserved Zn-finger pr 95.9 0.0078 1.7E-07 57.1 3.9 80 191-271 63-156 (351)
122 KOG2314 Translation initiation 95.9 0.032 6.8E-07 55.9 8.0 74 193-266 57-141 (698)
123 KOG0129 Predicted RNA-binding 95.6 0.037 8.1E-07 54.9 7.5 57 193-250 258-326 (520)
124 PF14608 zf-CCCH_2: Zinc finge 95.6 0.0084 1.8E-07 32.5 1.6 18 129-148 1-18 (19)
125 KOG0129 Predicted RNA-binding 95.5 0.034 7.3E-07 55.2 6.6 58 193-250 369-433 (520)
126 KOG4285 Mitotic phosphoprotein 94.6 0.12 2.7E-06 48.1 7.3 70 194-266 197-267 (350)
127 KOG0112 Large RNA-binding prot 94.3 0.0088 1.9E-07 62.7 -0.9 75 191-266 369-448 (975)
128 KOG1996 mRNA splicing factor [ 94.1 0.16 3.4E-06 47.2 6.7 58 209-267 301-365 (378)
129 KOG4307 RNA binding protein RB 93.9 0.15 3.3E-06 52.4 6.8 71 194-265 867-943 (944)
130 PF04847 Calcipressin: Calcipr 93.8 0.2 4.3E-06 44.1 6.7 64 207-270 8-72 (184)
131 PF10309 DUF2414: Protein of u 93.4 0.49 1.1E-05 33.9 6.9 55 194-250 5-62 (62)
132 KOG0115 RNA-binding protein p5 93.3 0.076 1.6E-06 48.4 3.3 57 195-251 32-93 (275)
133 PF08675 RNA_bind: RNA binding 92.6 0.63 1.4E-05 35.4 6.8 54 194-250 9-62 (87)
134 KOG0128 RNA-binding protein SA 92.4 0.069 1.5E-06 56.0 1.8 79 194-273 736-819 (881)
135 KOG0128 RNA-binding protein SA 91.8 0.01 2.2E-07 61.9 -4.8 59 192-250 665-729 (881)
136 KOG4307 RNA binding protein RB 91.3 0.1 2.2E-06 53.6 1.7 74 192-266 432-511 (944)
137 KOG2068 MOT2 transcription fac 91.1 0.08 1.7E-06 50.1 0.7 73 195-268 78-162 (327)
138 PF03467 Smg4_UPF3: Smg-4/UPF3 90.8 0.57 1.2E-05 40.9 5.7 75 193-267 6-96 (176)
139 KOG1040 Polyadenylation factor 89.7 0.12 2.6E-06 49.3 0.6 25 126-150 76-100 (325)
140 KOG1365 RNA-binding protein Fu 89.6 1.6 3.5E-05 42.2 7.9 57 193-249 160-225 (508)
141 KOG4574 RNA-binding protein (c 89.6 0.24 5.2E-06 52.1 2.6 76 196-271 300-376 (1007)
142 PF03880 DbpA: DbpA RNA bindin 89.0 2.3 4.9E-05 31.4 6.9 67 196-266 2-74 (74)
143 KOG2591 c-Mpl binding protein, 88.6 6.1 0.00013 40.1 11.4 70 192-262 173-245 (684)
144 PF07576 BRAP2: BRCA1-associat 87.1 5.2 0.00011 32.1 8.4 62 195-257 14-80 (110)
145 KOG2494 C3H1-type Zn-finger pr 86.9 0.2 4.4E-06 47.2 0.2 24 127-150 37-61 (331)
146 PF01363 FYVE: FYVE zinc finge 86.6 0.12 2.7E-06 37.5 -1.2 36 5-42 6-41 (69)
147 PF10013 DUF2256: Uncharacteri 84.4 0.45 9.8E-06 31.1 0.8 12 8-19 8-19 (42)
148 KOG1040 Polyadenylation factor 83.6 0.6 1.3E-05 44.6 1.7 28 125-152 103-131 (325)
149 PF09963 DUF2197: Uncharacteri 83.2 0.34 7.4E-06 33.9 -0.2 32 10-41 4-38 (56)
150 PF10650 zf-C3H1: Putative zin 82.5 0.84 1.8E-05 25.9 1.3 20 129-149 2-22 (23)
151 smart00064 FYVE Protein presen 81.1 0.68 1.5E-05 33.4 0.8 35 6-42 8-42 (68)
152 KOG0804 Cytoplasmic Zn-finger 79.0 5.2 0.00011 39.6 6.2 66 191-257 71-141 (493)
153 cd00065 FYVE FYVE domain; Zinc 77.9 1.2 2.5E-05 30.9 1.1 17 9-25 3-19 (57)
154 KOG4660 Protein Mei2, essentia 77.1 3.9 8.6E-05 41.3 4.9 54 218-271 413-475 (549)
155 KOG1595 CCCH-type Zn-finger pr 77.0 1.5 3.1E-05 44.3 1.9 22 128-149 237-258 (528)
156 KOG1763 Uncharacterized conser 75.4 0.97 2.1E-05 42.1 0.2 26 126-151 91-116 (343)
157 smart00782 PhnA_Zn_Ribbon PhnA 74.5 3.1 6.8E-05 28.0 2.4 41 3-43 2-45 (47)
158 KOG2185 Predicted RNA-processi 74.5 1.4 3E-05 43.0 0.9 23 128-150 141-163 (486)
159 KOG2253 U1 snRNP complex, subu 74.4 1.8 3.8E-05 44.7 1.7 69 193-265 39-107 (668)
160 KOG1677 CCCH-type Zn-finger pr 74.3 2.1 4.5E-05 41.0 2.2 27 126-152 176-203 (332)
161 KOG1039 Predicted E3 ubiquitin 74.0 1.3 2.8E-05 42.7 0.7 25 128-152 9-33 (344)
162 KOG2202 U2 snRNP splicing fact 70.4 2.1 4.5E-05 39.2 1.1 26 127-152 152-177 (260)
163 COG5152 Uncharacterized conser 70.3 1.9 4.1E-05 38.0 0.7 25 127-151 141-166 (259)
164 KOG4410 5-formyltetrahydrofola 69.1 16 0.00035 34.1 6.5 50 194-243 330-380 (396)
165 COG4338 Uncharacterized protei 66.2 1.8 3.9E-05 29.1 -0.1 12 8-19 12-23 (54)
166 KOG4210 Nuclear localization s 61.3 6.1 0.00013 37.2 2.4 75 192-267 86-166 (285)
167 PF10567 Nab6_mRNP_bdg: RNA-re 60.7 17 0.00036 34.2 5.0 74 194-267 15-106 (309)
168 PF11767 SET_assoc: Histone ly 60.4 58 0.0013 23.6 6.8 54 205-262 11-64 (66)
169 PF02318 FYVE_2: FYVE-type zin 60.0 3.2 6.8E-05 33.7 0.2 35 7-42 53-87 (118)
170 KOG2318 Uncharacterized conser 59.2 43 0.00094 34.4 7.9 75 190-265 170-304 (650)
171 KOG1492 C3H1-type Zn-finger pr 57.9 4.7 0.0001 36.1 0.9 25 126-150 205-230 (377)
172 PHA00732 hypothetical protein 56.1 9.5 0.00021 28.7 2.2 19 49-67 55-73 (79)
173 COG5084 YTH1 Cleavage and poly 55.3 7.7 0.00017 36.4 1.9 28 125-152 102-129 (285)
174 COG5084 YTH1 Cleavage and poly 52.5 8.3 0.00018 36.2 1.6 27 127-153 134-161 (285)
175 PF15513 DUF4651: Domain of un 52.4 24 0.00052 25.3 3.6 20 209-228 9-28 (62)
176 KOG3002 Zn finger protein [Gen 51.8 11 0.00024 35.8 2.4 42 9-55 49-91 (299)
177 KOG4019 Calcineurin-mediated s 51.4 16 0.00035 31.9 3.1 77 193-270 9-91 (193)
178 PF10235 Cript: Microtubule-as 50.1 7 0.00015 30.2 0.6 38 8-56 44-84 (90)
179 KOG2494 C3H1-type Zn-finger pr 49.8 7.8 0.00017 36.8 1.0 26 125-151 69-94 (331)
180 PF00403 HMA: Heavy-metal-asso 49.2 84 0.0018 21.5 6.5 55 196-250 1-59 (62)
181 KOG4483 Uncharacterized conser 47.6 33 0.00072 33.6 4.9 55 194-249 391-446 (528)
182 smart00291 ZnF_ZZ Zinc-binding 45.4 15 0.00033 24.1 1.6 37 7-56 3-39 (44)
183 PF13913 zf-C2HC_2: zinc-finge 44.2 10 0.00022 21.8 0.5 14 9-22 3-16 (25)
184 PF06827 zf-FPG_IleRS: Zinc fi 43.6 23 0.00051 21.0 2.2 29 8-42 1-29 (30)
185 PRK14548 50S ribosomal protein 43.4 68 0.0015 24.4 5.1 55 196-250 22-81 (84)
186 COG5252 Uncharacterized conser 42.1 19 0.00041 32.8 2.2 25 126-150 84-108 (299)
187 KOG1923 Rac1 GTPase effector F 41.8 48 0.001 35.2 5.3 14 56-69 11-24 (830)
188 PF13408 Zn_ribbon_recom: Reco 41.3 23 0.00049 24.1 2.1 34 10-48 7-40 (58)
189 PF00096 zf-C2H2: Zinc finger, 40.5 6.8 0.00015 21.4 -0.6 10 10-19 2-11 (23)
190 KOG1813 Predicted E3 ubiquitin 38.3 11 0.00024 35.4 0.1 26 126-151 185-211 (313)
191 KOG3671 Actin regulatory prote 37.8 71 0.0015 32.3 5.6 53 5-58 31-88 (569)
192 PF04423 Rad50_zn_hook: Rad50 37.3 9.7 0.00021 26.2 -0.3 10 10-19 22-31 (54)
193 COG3709 Uncharacterized compon 36.3 45 0.00097 29.0 3.5 17 106-122 138-154 (192)
194 PF13790 DUF4182: Domain of un 36.2 15 0.00034 23.5 0.5 8 34-41 3-10 (38)
195 PF08544 GHMP_kinases_C: GHMP 36.1 1.6E+02 0.0035 21.3 6.3 41 209-250 37-79 (85)
196 KOG1492 C3H1-type Zn-finger pr 35.8 19 0.00041 32.3 1.2 26 126-151 232-257 (377)
197 PF13746 Fer4_18: 4Fe-4S diclu 35.7 15 0.00032 26.7 0.4 18 34-56 3-20 (69)
198 PF00569 ZZ: Zinc finger, ZZ t 34.9 23 0.00049 23.5 1.2 18 7-24 3-21 (46)
199 KOG1074 Transcriptional repres 34.4 14 0.00031 39.4 0.2 11 10-20 635-645 (958)
200 KOG2675 Adenylate cyclase-asso 33.6 38 0.00082 33.6 2.9 8 336-343 259-266 (480)
201 KOG4676 Splicing factor, argin 33.1 10 0.00022 37.0 -1.0 74 194-269 151-226 (479)
202 PTZ00303 phosphatidylinositol 32.3 22 0.00048 37.8 1.2 63 9-71 461-546 (1374)
203 TIGR03636 L23_arch archaeal ri 32.0 1.2E+02 0.0026 22.6 4.8 55 196-250 15-74 (77)
204 PF07292 NID: Nmi/IFP 35 domai 31.5 64 0.0014 24.8 3.3 33 233-265 1-33 (88)
205 PF13465 zf-H2C2_2: Zinc-finge 29.6 14 0.0003 21.3 -0.5 11 9-19 15-25 (26)
206 KOG3049 Succinate dehydrogenas 29.3 47 0.001 29.9 2.6 42 16-71 47-88 (288)
207 PF02714 DUF221: Domain of unk 29.3 51 0.0011 31.1 3.1 32 233-267 1-32 (325)
208 KOG3476 Microtubule-associated 29.0 13 0.00027 28.4 -0.9 15 36-50 71-85 (100)
209 PF03468 XS: XS domain; Inter 28.9 29 0.00062 28.1 1.1 44 206-250 29-76 (116)
210 PF14634 zf-RING_5: zinc-RING 28.8 24 0.00051 23.0 0.5 31 10-45 1-33 (44)
211 PF09293 RNaseH_C: T4 RNase H, 28.8 26 0.00056 28.6 0.8 37 51-88 74-110 (122)
212 COG2608 CopZ Copper chaperone 28.5 2E+02 0.0043 20.7 5.5 55 195-249 4-59 (71)
213 PF07292 NID: Nmi/IFP 35 domai 27.6 35 0.00076 26.2 1.3 26 191-216 49-74 (88)
214 cd02334 ZZ_dystrophin Zinc fin 27.3 40 0.00086 22.9 1.4 31 10-53 2-33 (49)
215 PF07711 RabGGT_insert: Rab ge 26.6 31 0.00068 27.0 0.9 48 221-272 3-50 (102)
216 KOG2391 Vacuolar sorting prote 26.3 1.2E+02 0.0026 29.2 4.8 10 230-239 84-93 (365)
217 KOG2893 Zn finger protein [Gen 25.1 1.7E+02 0.0036 26.9 5.3 53 287-341 144-207 (341)
218 KOG2891 Surface glycoprotein [ 24.9 71 0.0015 29.9 3.0 34 195-228 150-195 (445)
219 KOG3671 Actin regulatory prote 24.3 1.3E+02 0.0029 30.5 4.9 12 208-219 266-277 (569)
220 KOG4672 Uncharacterized conser 22.6 1.8E+02 0.0039 28.8 5.3 23 111-133 104-126 (487)
221 COG5063 CTH1 CCCH-type Zn-fing 22.1 42 0.00092 31.7 1.0 25 127-151 274-299 (351)
222 KOG4454 RNA binding protein (R 22.1 22 0.00048 32.1 -0.8 67 184-250 70-145 (267)
223 PF12874 zf-met: Zinc-finger o 21.7 24 0.00052 19.6 -0.4 10 10-19 2-11 (25)
224 KOG4537 Zn-ribbon-containing p 21.5 36 0.00079 28.9 0.4 22 34-55 40-68 (178)
225 COG0479 FrdB Succinate dehydro 21.0 45 0.00097 30.5 0.9 36 33-69 54-103 (234)
226 KOG1295 Nonsense-mediated deca 20.6 1.3E+02 0.0029 29.3 4.1 67 194-260 7-82 (376)
227 KOG1039 Predicted E3 ubiquitin 20.5 53 0.0012 31.8 1.4 34 121-154 243-278 (344)
228 cd02345 ZZ_dah Zinc finger, ZZ 20.0 88 0.0019 21.0 2.0 30 10-52 2-32 (49)
No 1
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=6.8e-95 Score=661.67 Aligned_cols=264 Identities=69% Similarity=1.206 Sum_probs=256.0
Q ss_pred cccccccccccCCCCceeeeecCCCCCCccceeeehhccccccccccccccCCCCCcHHHHHhhhccCCCCCCCcchhhH
Q 048750 3 TKADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNR 82 (344)
Q Consensus 3 ~k~~~g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~~kn~cq~c~~dl~~~~p~~~rd~~l~~~~~~~~~~~~~n~ 82 (344)
||++||+||||||||||+|||+||+++|||||+||||||++|||||||||||+|||||||||++|+++ |++|++|+||
T Consensus 36 tK~~~gkECKICtrPfT~Frw~pgr~~r~kKTeICqtCaklKNvCQ~CmLDle~glPiqvRD~~l~l~--dn~p~~dvnr 113 (377)
T KOG0153|consen 36 TKEPYGKECKICTRPFTIFRWCPGRGARFKKTEICQTCAKLKNVCQTCMLDLEYGLPIQVRDAALSLV--DNVPTSDVNR 113 (377)
T ss_pred eccccCCccceecCcceEEEeccccccccccchHHHHHHHHHhHHHHhhhhhccCCcceehhhhhhhh--hccchhhhhH
Confidence 89999999999999999999999999999999999999999999999999999999999999999997 7999999999
Q ss_pred HHHHHHHHHHHHcCCCcccccCCCC---chhHHHHhhhcCcccccCCccccccccCCcCCCCCCCCCCCCCCCCCccccc
Q 048750 83 EYFAEEHDRRARAGIDYESSYGKAR---PSDTILKLQRTQPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGELSQQ 159 (344)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~l~~lar~~py~~~~~~~~C~ff~~G~C~rG~~Cpy~H~~p~~~~~~~~ 159 (344)
|||+|++++++.+|.++....++.+ ++|+|++|+|+.|||++|+++||+||++|+|+||++|+|+|++|.+++++.|
T Consensus 114 e~f~qn~~r~l~~G~~~q~~~~~~~a~~~~d~l~~l~rt~p~ykrn~p~Icsf~v~geckRG~ec~yrhEkp~d~~L~~q 193 (377)
T KOG0153|consen 114 EYFAQNHDRKLSNGDDTQPASAKARALAPNDMLRKLQRTTPYYKRNRPHICSFFVKGECKRGAECPYRHEKPPDDPLSLQ 193 (377)
T ss_pred HHHHHHHHhhcccCCCcccccchhcccchHHHHHHHhccCccccCCCCccccceeeccccccccccccccCCCCcchhhc
Confidence 9999999999988876666555555 8899999999999999999999999999999999999999999988999999
Q ss_pred cccccccCCCChHHHhhhhccCCCCCCCCCCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCC
Q 048750 160 NIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTT 239 (344)
Q Consensus 160 ~i~d~~~g~~~p~a~k~l~~~~~~~~~~~p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~ 239 (344)
||+|||+|.+||++.+++.++..++.+.+|+|.++++|||++|.+.++|.+|+++|.+||+|++|++...++||||+|.+
T Consensus 194 ni~dryyg~ndPva~kil~ra~~~~~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftT 273 (377)
T KOG0153|consen 194 NIKDRYYGLNDPVALKILNRAGSAGTLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTT 273 (377)
T ss_pred ccccccccccChHHHHHHhhcccccccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEECCeEEEEEEcCC
Q 048750 240 REGAEKAAEELSNKLVIKGLRLKLMWGKP 268 (344)
Q Consensus 240 ~~~A~~A~~~l~~~~~i~g~~l~V~~ak~ 268 (344)
+++|+.|++...+.++|+|++|+|.|+++
T Consensus 274 R~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 274 REAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred hHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 99999999999999999999999999999
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=5.7e-16 Score=138.86 Aligned_cols=82 Identities=27% Similarity=0.547 Sum_probs=76.0
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
+..+++++|||||+..++|++||+.|+.||.|.+|+|.+++|||||.|.+.|+|.+||..|+| ..|+|..+++.|.|..
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNn-tei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNN-TEIGGQLVRCSWGKEG 238 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcC-ceeCceEEEEeccccC
Confidence 345689999999999999999999999999999999999999999999999999999999977 5999999999999976
Q ss_pred CCC
Q 048750 270 TQR 272 (344)
Q Consensus 270 ~~~ 272 (344)
...
T Consensus 239 ~~~ 241 (321)
T KOG0148|consen 239 DDG 241 (321)
T ss_pred CCC
Confidence 543
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=3.3e-15 Score=126.44 Aligned_cols=79 Identities=20% Similarity=0.398 Sum_probs=72.0
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
...++|||+||+.+++|++|+++|++||.|.++.|+.+ +|||||+|.+.++|+.|++.|++ ..|+|+.|+|+|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng-~~i~Gr~l~V~~ 110 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDG-KELNGRHIRVNP 110 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC-CEECCEEEEEEe
Confidence 44779999999999999999999999999999999864 79999999999999999999966 599999999999
Q ss_pred cCCCCC
Q 048750 266 GKPQTQ 271 (344)
Q Consensus 266 ak~~~~ 271 (344)
++++..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 987543
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.55 E-value=4.3e-14 Score=144.87 Aligned_cols=79 Identities=29% Similarity=0.474 Sum_probs=72.1
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
....+|||+||+.++++++|+++|++||.|.+++|+.+ +|||||+|.+.++|++|+..|++ ..++|+.|.|.|+
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g-~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHG-RMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcC-CeeCCceeEEEec
Confidence 34678999999999999999999999999999999875 69999999999999999999977 5999999999999
Q ss_pred CCCCC
Q 048750 267 KPQTQ 271 (344)
Q Consensus 267 k~~~~ 271 (344)
..+..
T Consensus 362 ~~k~~ 366 (562)
T TIGR01628 362 QRKEQ 366 (562)
T ss_pred cCcHH
Confidence 86543
No 5
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=4.5e-14 Score=125.18 Aligned_cols=79 Identities=30% Similarity=0.548 Sum_probs=73.3
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
+..+..+|-|.||+.+++|++|+++|.+||.|.+|.|..+ +|||||+|.++++|.+||+.|+| +-+++-.|+|
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG-~gyd~LILrv 263 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNG-YGYDNLILRV 263 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccC-cccceEEEEE
Confidence 4456789999999999999999999999999999999987 89999999999999999999955 6889999999
Q ss_pred EEcCCC
Q 048750 264 MWGKPQ 269 (344)
Q Consensus 264 ~~ak~~ 269 (344)
+|++|+
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999985
No 6
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.52 E-value=1e-13 Score=139.31 Aligned_cols=79 Identities=37% Similarity=0.632 Sum_probs=73.7
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCCCCC
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRP 273 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~~~~ 273 (344)
.+|||||+|+..++|+||.++|++||+|.+|.++..++||||.+.++.+|++|+.+|.+ +.+.++.|+|.|+.....+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n-~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSN-VKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhc-ccccceeeEEeeeccCCcch
Confidence 68999999999999999999999999999999999999999999999999999999965 68999999999998665544
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.51 E-value=1.4e-13 Score=132.69 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=72.1
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
....+|||+|||.++++++|+++|++||.|.+++|+.+ +|||||+|.+.++|.+|++.|+| ..++|+.|+|.|
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG-~~~~gr~i~V~~ 345 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNG-YTLGNRVLQVSF 345 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCC-CEECCeEEEEEE
Confidence 33457999999999999999999999999999999975 79999999999999999999976 599999999999
Q ss_pred cCCCCC
Q 048750 266 GKPQTQ 271 (344)
Q Consensus 266 ak~~~~ 271 (344)
...+..
T Consensus 346 ~~~~~~ 351 (352)
T TIGR01661 346 KTNKAY 351 (352)
T ss_pred ccCCCC
Confidence 987653
No 8
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=7.1e-14 Score=123.43 Aligned_cols=78 Identities=26% Similarity=0.423 Sum_probs=71.1
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
..|...++||||||++++..++|+++|++||+|++..|+.+ |||+||+|.+.++|++|++.. + -+|+||+.+
T Consensus 7 ~~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~-piIdGR~aN 84 (247)
T KOG0149|consen 7 FGDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-N-PIIDGRKAN 84 (247)
T ss_pred CCCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-C-Ccccccccc
Confidence 35788999999999999999999999999999999999986 899999999999999999876 3 499999999
Q ss_pred EEEcCC
Q 048750 263 LMWGKP 268 (344)
Q Consensus 263 V~~ak~ 268 (344)
|.+|.-
T Consensus 85 cnlA~l 90 (247)
T KOG0149|consen 85 CNLASL 90 (247)
T ss_pred cchhhh
Confidence 998754
No 9
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.46 E-value=2.6e-13 Score=99.33 Aligned_cols=65 Identities=46% Similarity=0.746 Sum_probs=61.2
Q ss_pred EEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 197 LYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 197 LfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
|||+|||.++++++|+++|++||.|..+.+..+ +++|||+|.+.++|+.|++.+++ ..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g-~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNG-KKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTT-EEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCC-CEECccCcC
Confidence 799999999999999999999999999999884 78999999999999999999966 699999885
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.45 E-value=3.5e-13 Score=129.61 Aligned_cols=80 Identities=21% Similarity=0.427 Sum_probs=72.8
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
++...++|||+|||.+++|++|+++|+.||+|++|+|+.+ +|||||+|.+.++|++|++.|++ ..+.+++|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG-~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNG-ITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCC-CccCCceeee
Confidence 4456899999999999999999999999999999999875 58999999999999999999966 5999999999
Q ss_pred EEcCCCC
Q 048750 264 MWGKPQT 270 (344)
Q Consensus 264 ~~ak~~~ 270 (344)
.|+++..
T Consensus 182 ~~a~p~~ 188 (346)
T TIGR01659 182 SYARPGG 188 (346)
T ss_pred ecccccc
Confidence 9998743
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.45 E-value=3.8e-13 Score=129.71 Aligned_cols=77 Identities=31% Similarity=0.513 Sum_probs=71.2
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
+.++|||+|||.+++|++|+++|++||+|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..+.|+.|+|.|+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g-~~l~g~~i~v~~a 80 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNG-LRLQNKTIKVSYA 80 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhccc-EEECCeeEEEEee
Confidence 3679999999999999999999999999999999875 58999999999999999999966 6999999999999
Q ss_pred CCCC
Q 048750 267 KPQT 270 (344)
Q Consensus 267 k~~~ 270 (344)
++..
T Consensus 81 ~~~~ 84 (352)
T TIGR01661 81 RPSS 84 (352)
T ss_pred cccc
Confidence 8754
No 12
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=3e-13 Score=124.41 Aligned_cols=80 Identities=25% Similarity=0.422 Sum_probs=73.7
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
.....++|+|+|||+...|-||+.+|++||.|.+|.|+.+ |||+||+|++.++|++|-++|++ ..|.||+|.|..
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHg-t~VEGRkIEVn~ 170 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHG-TVVEGRKIEVNN 170 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhc-ceeeceEEEEec
Confidence 3445689999999999999999999999999999999986 89999999999999999999977 599999999999
Q ss_pred cCCCC
Q 048750 266 GKPQT 270 (344)
Q Consensus 266 ak~~~ 270 (344)
+.++.
T Consensus 171 ATarV 175 (376)
T KOG0125|consen 171 ATARV 175 (376)
T ss_pred cchhh
Confidence 98764
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.44 E-value=1.8e-12 Score=131.71 Aligned_cols=78 Identities=21% Similarity=0.394 Sum_probs=71.5
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
...++|||+||+.++++++|+++|+.||.|.+++|..+ +|||||+|.+.++|.+|++.|++ +.++|+.|+|.|
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg-~elgGr~LrV~k 280 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNL-FDLGGQYLRVGK 280 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCC-CeeCCeEEEEEe
Confidence 34679999999999999999999999999999999874 79999999999999999999965 699999999999
Q ss_pred cCCCC
Q 048750 266 GKPQT 270 (344)
Q Consensus 266 ak~~~ 270 (344)
+.+..
T Consensus 281 Ai~pP 285 (612)
T TIGR01645 281 CVTPP 285 (612)
T ss_pred cCCCc
Confidence 98644
No 14
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.41 E-value=1.1e-12 Score=119.28 Aligned_cols=74 Identities=28% Similarity=0.449 Sum_probs=68.1
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ---KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~---kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
.++|||+||++.++|++|+++|+.||+|.+|.|..+ +|||||+|.+.++|+.|+. |+| ..|.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG-~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSG-ATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcC-CeeCCceEEEEeccCC
Confidence 679999999999999999999999999999999876 6899999999999999995 865 5999999999998743
No 15
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1.2e-12 Score=110.75 Aligned_cols=78 Identities=27% Similarity=0.444 Sum_probs=71.9
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCCC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQ 271 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~~ 271 (344)
..+.||||||+..+++.+|...|..||.|.+|.|..+ .|||||+|+++.+|+.|+..|++. .|.|..|+|+.++-...
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~-~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGK-DICGSRIRVELSTGRPR 87 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCc-cccCceEEEEeecCCcc
Confidence 3789999999999999999999999999999999887 799999999999999999999775 99999999999876554
No 16
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=9.2e-13 Score=124.99 Aligned_cols=82 Identities=26% Similarity=0.423 Sum_probs=76.0
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECC--eEEEEEEc
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKG--LRLKLMWG 266 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g--~~l~V~~a 266 (344)
.++||||-|+...+|.+|+++|++||.|+++.|+++ ||||||.|.+++.|..|+++|++...+.| .+|.|+||
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 678999999999999999999999999999999996 99999999999999999999999888887 58999999
Q ss_pred CCCCCCCCC
Q 048750 267 KPQTQRPEG 275 (344)
Q Consensus 267 k~~~~~~~~ 275 (344)
.+++.|...
T Consensus 204 Dtqkdk~~~ 212 (510)
T KOG0144|consen 204 DTQKDKDGK 212 (510)
T ss_pred ccCCCchHH
Confidence 998776543
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.34 E-value=5.2e-12 Score=121.55 Aligned_cols=78 Identities=26% Similarity=0.382 Sum_probs=69.7
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECC--eEEEEE
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKG--LRLKLM 264 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g--~~l~V~ 264 (344)
..++|||+||+.+++|++|+++|++||+|++++|+.+ ++||||+|.++++|++|++.|++. .+.+ +.|+|+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~-~~~g~~~~l~V~ 270 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV-IPEGGSQPLTVR 270 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC-ccCCCceeEEEE
Confidence 4678999999999999999999999999999999876 489999999999999999999764 6655 799999
Q ss_pred EcCCCCC
Q 048750 265 WGKPQTQ 271 (344)
Q Consensus 265 ~ak~~~~ 271 (344)
|++....
T Consensus 271 ~a~~~~~ 277 (346)
T TIGR01659 271 LAEEHGK 277 (346)
T ss_pred ECCcccc
Confidence 9987543
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.33 E-value=6.5e-12 Score=127.32 Aligned_cols=77 Identities=30% Similarity=0.535 Sum_probs=70.6
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcC--CCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAH--GEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~f--G~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~ 270 (344)
..++|||+||+.+++|++|+++|++| |+|++|+++ ++||||+|.++++|++|++.|++ ..|+|+.|+|.|+++..
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--rgfAFVeF~s~e~A~kAi~~lnG-~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--RDYAFVHFEDREDAVKAMDELNG-KELEGSEIEVTLAKPVD 308 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--cCeEEEEeCCHHHHHHHHHHhCC-CEECCEEEEEEEccCCC
Confidence 46789999999999999999999999 999999887 67999999999999999999966 59999999999999865
Q ss_pred CC
Q 048750 271 QR 272 (344)
Q Consensus 271 ~~ 272 (344)
..
T Consensus 309 ~~ 310 (578)
T TIGR01648 309 KK 310 (578)
T ss_pred cc
Confidence 43
No 19
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.33 E-value=8.4e-12 Score=91.93 Aligned_cols=65 Identities=32% Similarity=0.614 Sum_probs=58.8
Q ss_pred EEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 197 LYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 197 LfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
|||+|||.++++++|+++|+.||.|..+++..+ +++|||+|.+.++|++|++.++ +..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~-~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN-GKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT-TEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC-CcEECCEEcC
Confidence 799999999999999999999999999999987 5899999999999999999884 5799999875
No 20
>PLN03213 repressor of silencing 3; Provisional
Probab=99.31 E-value=6.3e-12 Score=121.02 Aligned_cols=77 Identities=23% Similarity=0.391 Sum_probs=70.5
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC--CCEEEEEeCCH--HHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ--KAFAFVTYTTR--EGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~--kg~aFV~F~~~--~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
....+||||||++++++++|+.+|+.||.|.+|.|++. ||||||+|.+. .++.+|++.|+| ..+.|+.|+|.-|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNG-AEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNG-CVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcC-CeecCceeEEeecc
Confidence 34689999999999999999999999999999999975 89999999987 789999999965 69999999999998
Q ss_pred CC
Q 048750 268 PQ 269 (344)
Q Consensus 268 ~~ 269 (344)
+.
T Consensus 87 P~ 88 (759)
T PLN03213 87 EH 88 (759)
T ss_pred HH
Confidence 64
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.31 E-value=9.9e-12 Score=125.13 Aligned_cols=77 Identities=19% Similarity=0.290 Sum_probs=71.0
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhC-CCeEECCeEEEEEEcCCCC
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELS-NKLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~-~~~~i~g~~l~V~~ak~~~ 270 (344)
.++|||+|||.+++|++|+++|++||.|.++.|+.++++|||+|.+.++|++|++.++ +...++|+.|+|.|+..+.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~ 79 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQE 79 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcc
Confidence 5799999999999999999999999999999999999999999999999999999763 4568999999999997543
No 22
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.31 E-value=3.2e-12 Score=110.82 Aligned_cols=79 Identities=27% Similarity=0.525 Sum_probs=72.6
Q ss_pred CCCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEE
Q 048750 188 PPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRL 261 (344)
Q Consensus 188 ~p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l 261 (344)
+|.-...++|-|.||...++.++|+.+|++||.|-+|.|..+ +|||||.|.+..+|+.|+++|++ .+++|+.|
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG-~~ldgRel 85 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDG-AVLDGREL 85 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcc-eeecccee
Confidence 455566789999999999999999999999999999999987 79999999999999999999966 59999999
Q ss_pred EEEEcC
Q 048750 262 KLMWGK 267 (344)
Q Consensus 262 ~V~~ak 267 (344)
+|++|+
T Consensus 86 rVq~ar 91 (256)
T KOG4207|consen 86 RVQMAR 91 (256)
T ss_pred eehhhh
Confidence 998876
No 23
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=1.7e-11 Score=116.93 Aligned_cols=112 Identities=25% Similarity=0.372 Sum_probs=87.1
Q ss_pred CCCCCCCCccccccccccccCCCChHHHhhhhccCCCCCCCCCCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEE
Q 048750 147 RHEMPVTGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKM 226 (344)
Q Consensus 147 ~H~~p~~~~~~~~~i~d~~~g~~~p~a~k~l~~~~~~~~~~~p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i 226 (344)
+..++..-.++...+...|..... ..+...-...+.|||.||+.++||+.|.++|++||.|+.|+.
T Consensus 226 rKl~~g~~klwgn~~tVdWAep~~--------------e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk 291 (506)
T KOG0117|consen 226 RKLMPGKIKLWGNAITVDWAEPEE--------------EPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKK 291 (506)
T ss_pred hhccCCceeecCCcceeeccCccc--------------CCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeec
Confidence 344555555666666555643221 111112345789999999999999999999999999999998
Q ss_pred eCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCCCCCCC
Q 048750 227 HPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEG 275 (344)
Q Consensus 227 ~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~~~~~~ 275 (344)
++ .||||.|.++++|.+|++.+++ ..|+|..|.|.+|||...+...
T Consensus 292 ~r--DYaFVHf~eR~davkAm~~~ng-keldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 292 PR--DYAFVHFAEREDAVKAMKETNG-KELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred cc--ceeEEeecchHHHHHHHHHhcC-ceecCceEEEEecCChhhhccc
Confidence 85 4999999999999999999966 5999999999999998766543
No 24
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=5e-12 Score=101.84 Aligned_cols=75 Identities=28% Similarity=0.459 Sum_probs=68.9
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
..++|||||||+..++|+.|.++|++.|+|..|.+-.+ -||+||+|.++++|+.|+..+++ ..++.+.|+|.|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisg-trLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISG-TRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhcc-Ccccccceeeec
Confidence 45789999999999999999999999999999988776 48999999999999999999955 699999999999
Q ss_pred cC
Q 048750 266 GK 267 (344)
Q Consensus 266 ak 267 (344)
.-
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 64
No 25
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.29 E-value=2.5e-11 Score=85.68 Aligned_cols=55 Identities=36% Similarity=0.576 Sum_probs=50.8
Q ss_pred HHHHhhcCCCeeEEEEeCCC-CEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 211 LRDNFYAHGEIESIKMHPQK-AFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 211 L~~~F~~fG~I~~v~i~~~k-g~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
|+++|++||+|.++.+..++ ++|||+|.+.++|+.|++.|++ ..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~-~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNG-RQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTT-SEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCC-CEECCcEEEEEEC
Confidence 68899999999999999987 9999999999999999999976 4899999999996
No 26
>smart00362 RRM_2 RNA recognition motif.
Probab=99.29 E-value=2.5e-11 Score=87.95 Aligned_cols=68 Identities=40% Similarity=0.652 Sum_probs=62.9
Q ss_pred EEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCC----CEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQK----AFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 196 tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~k----g~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
+|||+|||..+++++|+++|.+||.|..+.+..+. ++|||+|.+.++|+.|++.+++ ..++|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~-~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNG-TKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCC-cEECCEEEeeC
Confidence 58999999999999999999999999999999876 9999999999999999999965 58899998874
No 27
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.28 E-value=1.6e-11 Score=125.98 Aligned_cols=74 Identities=27% Similarity=0.561 Sum_probs=67.9
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCC
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKP 268 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~ 268 (344)
.+||||||+.+++|++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++.+++ ..++|+.|+|.|+..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~-~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNF-KRLGGKPIRIMWSQR 79 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCeeEEeecccc
Confidence 37999999999999999999999999999999875 57999999999999999999965 589999999999864
Q ss_pred C
Q 048750 269 Q 269 (344)
Q Consensus 269 ~ 269 (344)
.
T Consensus 80 ~ 80 (562)
T TIGR01628 80 D 80 (562)
T ss_pred c
Confidence 3
No 28
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=6.2e-12 Score=109.97 Aligned_cols=82 Identities=27% Similarity=0.529 Sum_probs=75.5
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
..++||||+|.++++|.-|...|-.||.|.+|.+..+ +|||||+|...++|..|+..|+. ..+-||.|+|.+|
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMne-sEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNE-SELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCch-hhhcceeEEEeec
Confidence 4689999999999999999999999999999999875 89999999999999999999955 6999999999999
Q ss_pred CCCCCCCCC
Q 048750 267 KPQTQRPEG 275 (344)
Q Consensus 267 k~~~~~~~~ 275 (344)
+|.+.+...
T Consensus 88 kP~kikegs 96 (298)
T KOG0111|consen 88 KPEKIKEGS 96 (298)
T ss_pred CCccccCCC
Confidence 998776543
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.24 E-value=2.5e-11 Score=123.41 Aligned_cols=74 Identities=31% Similarity=0.499 Sum_probs=68.3
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
..++||||||+.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.+.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG-~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNG-QMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCC-eEEecceeeeccc
Confidence 4679999999999999999999999999999999764 89999999999999999999965 6999999999875
Q ss_pred C
Q 048750 267 K 267 (344)
Q Consensus 267 k 267 (344)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 30
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.24 E-value=4.7e-11 Score=120.23 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=71.8
Q ss_pred CCCccEEEeccCCC-CCCHHHHHHHhhcCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCC
Q 048750 191 DESIKTLYVGGVDA-RITEQDLRDNFYAHGEIESIKMHPQ-KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKP 268 (344)
Q Consensus 191 d~~~~tLfVgnL~~-~~te~~L~~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~ 268 (344)
....++|||+||++ .+++++|+++|+.||.|.+|+|+.+ +|+|||+|.+.++|+.|++.|++ ..|.|+.|+|.+++.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng-~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNG-VKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCC-CEECCceEEEEEccc
Confidence 34578999999997 6999999999999999999999886 69999999999999999999976 599999999999876
Q ss_pred CC
Q 048750 269 QT 270 (344)
Q Consensus 269 ~~ 270 (344)
..
T Consensus 351 ~~ 352 (481)
T TIGR01649 351 QN 352 (481)
T ss_pred cc
Confidence 54
No 31
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.23 E-value=5.2e-11 Score=106.93 Aligned_cols=73 Identities=26% Similarity=0.256 Sum_probs=65.4
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ---KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~---kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
...+|||+||++.++|++|+++|+.||+|.+|+|+.+ +++|||+|.++++|+.|+. |+| ..|.++.|.|.-..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnG-a~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSG-ATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCC-CeeCCceEEEEeCc
Confidence 4579999999999999999999999999999999987 5799999999999999994 755 58899999887543
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=2.1e-11 Score=109.71 Aligned_cols=77 Identities=22% Similarity=0.509 Sum_probs=71.4
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
..--+|||.|..+++.++|++.|.+||+|.+.+|+++ |||+||.|-++++||+||..|+|+ +|++|.|+-.||
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq-WlG~R~IRTNWA 139 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQ-WLGRRTIRTNWA 139 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCe-eeccceeecccc
Confidence 3567999999999999999999999999999999997 899999999999999999999775 999999999999
Q ss_pred CCCC
Q 048750 267 KPQT 270 (344)
Q Consensus 267 k~~~ 270 (344)
.-+.
T Consensus 140 TRKp 143 (321)
T KOG0148|consen 140 TRKP 143 (321)
T ss_pred ccCc
Confidence 7554
No 33
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2.4e-11 Score=115.48 Aligned_cols=82 Identities=29% Similarity=0.497 Sum_probs=75.3
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECC--eEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKG--LRLK 262 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g--~~l~ 262 (344)
|.+.-+||||.||..++|+|||++|++||.|.+|.|++| +||+||.|.++++|.+|+.+|+|...+-| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 566789999999999999999999999999999999997 79999999999999999999999988877 6899
Q ss_pred EEEcCCCCCC
Q 048750 263 LMWGKPQTQR 272 (344)
Q Consensus 263 V~~ak~~~~~ 272 (344)
|++|.....+
T Consensus 111 vk~Ad~E~er 120 (510)
T KOG0144|consen 111 VKYADGERER 120 (510)
T ss_pred ecccchhhhc
Confidence 9999866554
No 34
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=4.4e-11 Score=107.07 Aligned_cols=81 Identities=32% Similarity=0.499 Sum_probs=74.6
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
.+.+.+.|.|.-||..+|+++|+.+|+..|+|++++++++ -||+||.|.++++|++|+..|+ ++.+..+.|+|
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlN-GLrLQ~KTIKV 115 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLN-GLRLQNKTIKV 115 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhc-ceeeccceEEE
Confidence 4567889999999999999999999999999999999998 4899999999999999999994 57999999999
Q ss_pred EEcCCCCC
Q 048750 264 MWGKPQTQ 271 (344)
Q Consensus 264 ~~ak~~~~ 271 (344)
+|++|...
T Consensus 116 SyARPSs~ 123 (360)
T KOG0145|consen 116 SYARPSSD 123 (360)
T ss_pred EeccCChh
Confidence 99998653
No 35
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=7e-11 Score=107.69 Aligned_cols=79 Identities=25% Similarity=0.441 Sum_probs=72.0
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
...+||||+.|+.+++|.+|+..|+.||.|+.|+|+++ +|||||+|.+..+...|.+..++ ..|+|+.|.|.+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG-~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADG-IKIDGRRILVDV 177 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccC-ceecCcEEEEEe
Confidence 45899999999999999999999999999999999997 89999999999999999999865 699999999998
Q ss_pred cCCCCC
Q 048750 266 GKPQTQ 271 (344)
Q Consensus 266 ak~~~~ 271 (344)
-+.+..
T Consensus 178 ERgRTv 183 (335)
T KOG0113|consen 178 ERGRTV 183 (335)
T ss_pred cccccc
Confidence 765443
No 36
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=4.8e-11 Score=101.93 Aligned_cols=78 Identities=27% Similarity=0.498 Sum_probs=69.8
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCC
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ---KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKP 268 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~---kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~ 268 (344)
...++|||||||.++.|.+|.++|.+||.|.+|.+... ..||||+|++..+|+.||..- ++..++|.+|+|+|++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygR-dGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGR-DGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcc-cccccCcceEEEEeccC
Confidence 34789999999999999999999999999999988765 469999999999999999876 45799999999999886
Q ss_pred CC
Q 048750 269 QT 270 (344)
Q Consensus 269 ~~ 270 (344)
-.
T Consensus 83 gr 84 (241)
T KOG0105|consen 83 GR 84 (241)
T ss_pred CC
Confidence 54
No 37
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.19 E-value=1e-10 Score=116.83 Aligned_cols=74 Identities=32% Similarity=0.608 Sum_probs=69.2
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
.++|||+||+..+++++|+++|+.||.|.+|.|+.+ +|||||+|.+.++|+.|++.|+| ..|.|+.|+|.|+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g-~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNG-FELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCC-cEECCEEEEEEEcc
Confidence 689999999999999999999999999999999854 68999999999999999999966 69999999999987
Q ss_pred C
Q 048750 268 P 268 (344)
Q Consensus 268 ~ 268 (344)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 4
No 38
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.18 E-value=8.3e-11 Score=119.34 Aligned_cols=75 Identities=24% Similarity=0.345 Sum_probs=67.1
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
..++|||+|||.+++|++|+++|++||.|.+++|+.+ +|||||+|.+.++|++|++.|++..+..|+.|.|.++.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 4689999999999999999999999999999999864 89999999999999999999977644468888887764
No 39
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.17 E-value=1.8e-10 Score=116.54 Aligned_cols=79 Identities=15% Similarity=0.319 Sum_probs=71.4
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
...++|||+|||..+++++|+++|+.||.|..+.|+.+ +|||||+|.+.++|+.|++.|++ ..|+|+.|.|.|
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g-~~~~~~~l~v~~ 371 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNG-KDTGDNKLHVQR 371 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCC-CEECCeEEEEEE
Confidence 34679999999999999999999999999999998864 79999999999999999999966 589999999999
Q ss_pred cCCCCC
Q 048750 266 GKPQTQ 271 (344)
Q Consensus 266 ak~~~~ 271 (344)
+.....
T Consensus 372 a~~~~~ 377 (509)
T TIGR01642 372 ACVGAN 377 (509)
T ss_pred CccCCC
Confidence 976543
No 40
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=1.4e-10 Score=90.22 Aligned_cols=78 Identities=26% Similarity=0.413 Sum_probs=71.2
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ---KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~---kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
.++-|||.|||..+|.+++.++|.+||.|..|+|-.. +|-|||.|++..+|.+|++.|++ ..+.++.|.|-+..+.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg-~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSG-YNVDNRYLVVLYYQPE 95 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcc-cccCCceEEEEecCHH
Confidence 4789999999999999999999999999999999775 89999999999999999999966 5899999999988765
Q ss_pred CC
Q 048750 270 TQ 271 (344)
Q Consensus 270 ~~ 271 (344)
..
T Consensus 96 ~~ 97 (124)
T KOG0114|consen 96 DA 97 (124)
T ss_pred HH
Confidence 43
No 41
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.16 E-value=3e-10 Score=82.67 Aligned_cols=69 Identities=39% Similarity=0.666 Sum_probs=63.7
Q ss_pred EEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 196 tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
+|+|+|||..+++++|+++|..||.|..+.+..+ +++|||+|.+.++|..|++.+++ ..++|+.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~-~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNG-KELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEeC
Confidence 4899999999999999999999999999999886 68999999999999999999966 479999999875
No 42
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.11 E-value=3.3e-10 Score=113.23 Aligned_cols=76 Identities=20% Similarity=0.317 Sum_probs=68.8
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
+...++|||+|||..+++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|+. |++ ..+.|+.|.|.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g-~~~~g~~i~v~ 163 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTG-QMLLGRPIIVQ 163 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCC-CEECCeeeEEe
Confidence 456789999999999999999999999999999999875 7999999999999999997 755 58999999999
Q ss_pred EcCC
Q 048750 265 WGKP 268 (344)
Q Consensus 265 ~ak~ 268 (344)
++..
T Consensus 164 ~~~~ 167 (457)
T TIGR01622 164 SSQA 167 (457)
T ss_pred ecch
Confidence 8754
No 43
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.10 E-value=4e-10 Score=102.43 Aligned_cols=74 Identities=35% Similarity=0.622 Sum_probs=69.1
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
..+|||+||+.++++++|+++|.+||.|..+.+..+ +|+|||.|.+.++|..|++.+++ ..+.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~-~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNG-KELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCC-CeECCceeEeeccc
Confidence 689999999999999999999999999999999876 69999999999999999999965 59999999999976
Q ss_pred C
Q 048750 268 P 268 (344)
Q Consensus 268 ~ 268 (344)
+
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 44
>smart00360 RRM RNA recognition motif.
Probab=99.08 E-value=5.7e-10 Score=80.34 Aligned_cols=65 Identities=40% Similarity=0.646 Sum_probs=58.9
Q ss_pred eccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 199 VGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 199 VgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
|+||+..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|..|++.+++ ..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~-~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNG-KELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCC-CeeCCcEEEeC
Confidence 5799999999999999999999999999886 46999999999999999999965 58899998874
No 45
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=3.2e-10 Score=92.26 Aligned_cols=77 Identities=29% Similarity=0.470 Sum_probs=70.3
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
..-.|||.++++..+|++|.+.|..||+|+.|.+..+ +|||.|+|.+.+.|+.|++.+++ ..+-|..|.|.|+
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng-~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNG-AELLGQNVSVDWC 149 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccc-hhhhCCceeEEEE
Confidence 4568999999999999999999999999999999887 79999999999999999999955 6899999999998
Q ss_pred CCCC
Q 048750 267 KPQT 270 (344)
Q Consensus 267 k~~~ 270 (344)
-.+.
T Consensus 150 Fv~g 153 (170)
T KOG0130|consen 150 FVKG 153 (170)
T ss_pred EecC
Confidence 6543
No 46
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=1e-09 Score=98.74 Aligned_cols=80 Identities=25% Similarity=0.432 Sum_probs=72.2
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECC--eEEEEEE
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKG--LRLKLMW 265 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g--~~l~V~~ 265 (344)
+.++||||-|...-+|+|++.+|..||.|+++.+.+. ||||||.|.+..+|..||..|++.-.+-| ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 4689999999999999999999999999999999985 99999999999999999999988766666 6799999
Q ss_pred cCCCCCC
Q 048750 266 GKPQTQR 272 (344)
Q Consensus 266 ak~~~~~ 272 (344)
+...+.+
T Consensus 98 ADTdkER 104 (371)
T KOG0146|consen 98 ADTDKER 104 (371)
T ss_pred ccchHHH
Confidence 9876554
No 47
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.04 E-value=3.4e-10 Score=102.96 Aligned_cols=72 Identities=25% Similarity=0.452 Sum_probs=68.0
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
.+|||||||..+++.+|+.+|++||+|.++.|+ |+||||..++...|+.||..|++ ..|+|..|+|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairNLhg-YtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRNLHG-YTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhhccc-ceecceEEEEEecccc
Confidence 479999999999999999999999999999999 67999999999999999999966 6999999999998877
No 48
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.02 E-value=4.2e-10 Score=96.08 Aligned_cols=75 Identities=23% Similarity=0.430 Sum_probs=69.8
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
....|||||||+..++++-|.++|-+.|+|.++++.++ +|||||+|.++++|+-|++.|+ .+.+-|++|+|.-
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln-~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILN-MVKLYGRPIRVNK 85 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHH-HHHhcCceeEEEe
Confidence 34679999999999999999999999999999999886 7999999999999999999995 6789999999998
Q ss_pred cC
Q 048750 266 GK 267 (344)
Q Consensus 266 ak 267 (344)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 77
No 49
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=1.7e-10 Score=98.41 Aligned_cols=76 Identities=26% Similarity=0.430 Sum_probs=69.4
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
..+.-|||||||.++||.||..+|++||+|++|.++++ +||||+.|++..+.-.|+..|+| +.|.||.|+|..
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NG-iki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNG-IKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCC-ceecceeEEeee
Confidence 34678999999999999999999999999999999997 79999999999999999999955 799999999986
Q ss_pred cCC
Q 048750 266 GKP 268 (344)
Q Consensus 266 ak~ 268 (344)
-..
T Consensus 112 v~~ 114 (219)
T KOG0126|consen 112 VSN 114 (219)
T ss_pred ccc
Confidence 543
No 50
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.99 E-value=8.8e-10 Score=108.10 Aligned_cols=77 Identities=23% Similarity=0.433 Sum_probs=72.0
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCC
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKP 268 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~ 268 (344)
.++||||+|++++|++|.++|+..|.|.+++++.| +||||++|.+.++|+.|++.|++ ..++|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg-~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNG-AEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCC-cccCCceEEeecccc
Confidence 89999999999999999999999999999999997 89999999999999999999955 699999999999986
Q ss_pred CCCC
Q 048750 269 QTQR 272 (344)
Q Consensus 269 ~~~~ 272 (344)
...+
T Consensus 98 ~~~~ 101 (435)
T KOG0108|consen 98 RKNA 101 (435)
T ss_pred cchh
Confidence 6543
No 51
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=2.2e-09 Score=102.75 Aligned_cols=76 Identities=26% Similarity=0.379 Sum_probs=67.8
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
...+.||||.||.++.|++|.-+|++.|+|-+++|+.+ ||||||+|.+.+.|++|++.|+|.-+-.|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 56789999999999999999999999999999999986 899999999999999999999775344678887776
Q ss_pred cC
Q 048750 266 GK 267 (344)
Q Consensus 266 ak 267 (344)
+.
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 53
No 52
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.96 E-value=2.2e-09 Score=108.74 Aligned_cols=77 Identities=26% Similarity=0.448 Sum_probs=66.6
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcC------------CCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAH------------GEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVI 256 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~f------------G~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i 256 (344)
..+...++|||||||.++++++|.++|..+ +.|..+.+..++|||||+|.+.++|..|+. |++ +.+
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~-l~g-~~~ 247 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMA-LDS-IIY 247 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhc-CCC-eEe
Confidence 345667899999999999999999999874 467788888889999999999999999994 855 699
Q ss_pred CCeEEEEEEcC
Q 048750 257 KGLRLKLMWGK 267 (344)
Q Consensus 257 ~g~~l~V~~ak 267 (344)
.|+.|+|.+.+
T Consensus 248 ~g~~l~v~r~~ 258 (509)
T TIGR01642 248 SNVFLKIRRPH 258 (509)
T ss_pred eCceeEecCcc
Confidence 99999997654
No 53
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=3.9e-09 Score=94.75 Aligned_cols=79 Identities=20% Similarity=0.235 Sum_probs=72.0
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
+.+...--|||.||.++.+|.-|..+|+.||.|..|+|+++ +||+||++.+.++|..|+..|+| ..++++.|.
T Consensus 273 ~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNG-y~lg~rvLQ 351 (360)
T KOG0145|consen 273 GGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG-YRLGDRVLQ 351 (360)
T ss_pred CCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcC-ccccceEEE
Confidence 34455778999999999999999999999999999999997 89999999999999999999955 799999999
Q ss_pred EEEcCC
Q 048750 263 LMWGKP 268 (344)
Q Consensus 263 V~~ak~ 268 (344)
|.|...
T Consensus 352 VsFKtn 357 (360)
T KOG0145|consen 352 VSFKTN 357 (360)
T ss_pred EEEecC
Confidence 999754
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=3.2e-09 Score=103.80 Aligned_cols=77 Identities=23% Similarity=0.384 Sum_probs=71.1
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCC
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKP 268 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~ 268 (344)
...|.|.|||+.+...+|..+|+.||.|.+|.|... .|||||.|....+|+.|++.+++ ..|+||+|-|.||-+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~-~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNG-NKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccC-ceecCceeEEeeecc
Confidence 568999999999999999999999999999999875 68999999999999999999955 699999999999987
Q ss_pred CCC
Q 048750 269 QTQ 271 (344)
Q Consensus 269 ~~~ 271 (344)
+..
T Consensus 196 Kd~ 198 (678)
T KOG0127|consen 196 KDT 198 (678)
T ss_pred ccc
Confidence 654
No 55
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.89 E-value=4.1e-09 Score=90.09 Aligned_cols=84 Identities=23% Similarity=0.400 Sum_probs=71.9
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEE-EEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESI-KMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v-~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
..+|||+||.+.++|..|.+.|+.||.|.+. .++++ ++||||.|++.+.+.+|+++|+++ .++++++.|.++
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq-~l~nr~itv~ya 174 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQ-YLCNRPITVSYA 174 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccc-hhcCCceEEEEE
Confidence 4789999999999999999999999998764 44443 789999999999999999999775 899999999999
Q ss_pred CCCCCCCCCCCC
Q 048750 267 KPQTQRPEGESS 278 (344)
Q Consensus 267 k~~~~~~~~~~~ 278 (344)
..+..+......
T Consensus 175 ~k~~~kg~~~g~ 186 (203)
T KOG0131|consen 175 FKKDTKGERHGT 186 (203)
T ss_pred EecCCCcccCCC
Confidence 887776644444
No 56
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.89 E-value=6.6e-09 Score=104.23 Aligned_cols=78 Identities=31% Similarity=0.535 Sum_probs=72.4
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC---------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ---------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRL 261 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~---------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l 261 (344)
|+..+.|||+||++.++|+.|...|..||.|.+|+|+.. +.|+||.|-++.+|++|+..|+|. ++.+..+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~-iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGI-IVMEYEM 249 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcce-eeeeeee
Confidence 667899999999999999999999999999999999874 689999999999999999999775 8999999
Q ss_pred EEEEcCCC
Q 048750 262 KLMWGKPQ 269 (344)
Q Consensus 262 ~V~~ak~~ 269 (344)
++-|+++-
T Consensus 250 K~gWgk~V 257 (877)
T KOG0151|consen 250 KLGWGKAV 257 (877)
T ss_pred eecccccc
Confidence 99999863
No 57
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.88 E-value=6.1e-09 Score=92.04 Aligned_cols=76 Identities=24% Similarity=0.447 Sum_probs=69.3
Q ss_pred ccEEEeccCCCCCCHHHHHH----HhhcCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 194 IKTLYVGGVDARITEQDLRD----NFYAHGEIESIKMHPQ---KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~----~F~~fG~I~~v~i~~~---kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
+.||||.||++.+..++|++ +|++||+|.+|..... +|-|||.|.+.+.|-.|+.+|+| +.+-|+.++|.||
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~g-fpFygK~mriqyA 87 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQG-FPFYGKPMRIQYA 87 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcC-CcccCchhheecc
Confidence 45999999999999998887 9999999999998865 89999999999999999999966 6999999999999
Q ss_pred CCCC
Q 048750 267 KPQT 270 (344)
Q Consensus 267 k~~~ 270 (344)
+.+.
T Consensus 88 ~s~s 91 (221)
T KOG4206|consen 88 KSDS 91 (221)
T ss_pred cCcc
Confidence 8654
No 58
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=8.2e-09 Score=101.00 Aligned_cols=80 Identities=24% Similarity=0.368 Sum_probs=71.2
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHh-----CCCeEECCe
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEEL-----SNKLVIKGL 259 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l-----~~~~~i~g~ 259 (344)
+....+|||.||+++++|++|.++|++||+|..+.|+.+ +|+|||.|.+..+|..+|++. .+.++++||
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 345689999999999999999999999999999999875 799999999999999999876 234789999
Q ss_pred EEEEEEcCCCC
Q 048750 260 RLKLMWGKPQT 270 (344)
Q Consensus 260 ~l~V~~ak~~~ 270 (344)
.|+|..+-.+.
T Consensus 369 ~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 369 LLKVTLAVTRK 379 (678)
T ss_pred EEeeeeccchH
Confidence 99999987644
No 59
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=4.2e-09 Score=94.85 Aligned_cols=81 Identities=25% Similarity=0.382 Sum_probs=73.6
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
+..+.++|||..||.++.+.+|..+|-.||.|.+.+|..+ |.|+||.|++..+|+.||.+| |++.|+-++|+|
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAM-NGFQIGMKRLKV 359 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM-NGFQIGMKRLKV 359 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHh-cchhhhhhhhhh
Confidence 4556899999999999999999999999999999988775 789999999999999999999 557999999999
Q ss_pred EEcCCCCC
Q 048750 264 MWGKPQTQ 271 (344)
Q Consensus 264 ~~ak~~~~ 271 (344)
...+|+..
T Consensus 360 QLKRPkda 367 (371)
T KOG0146|consen 360 QLKRPKDA 367 (371)
T ss_pred hhcCcccc
Confidence 99988653
No 60
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=3.1e-09 Score=99.31 Aligned_cols=71 Identities=32% Similarity=0.535 Sum_probs=65.8
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
.+++|||.|.+++.|+.||..|..||.|++|.+..+ +|||||+|+-++.|..|++.|++ .+++||.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg-~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNG-QMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcc-ccccCccccccC
Confidence 578999999999999999999999999999998765 89999999999999999999966 599999999873
No 61
>smart00361 RRM_1 RNA recognition motif.
Probab=98.81 E-value=1.8e-08 Score=74.50 Aligned_cols=56 Identities=21% Similarity=0.433 Sum_probs=48.0
Q ss_pred HHHHHHHhh----cCCCeeEEE-EeC--------CCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 208 EQDLRDNFY----AHGEIESIK-MHP--------QKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 208 e~~L~~~F~----~fG~I~~v~-i~~--------~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
+++|+++|+ +||.|.+|. |.. .+|+|||+|.+.++|++|++.|+|. .++|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~-~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGR-YFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCC-EECCEEEEeC
Confidence 578888998 999999985 332 2799999999999999999999775 9999999863
No 62
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.79 E-value=8.5e-09 Score=93.96 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=72.0
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCCC
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQ 271 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~~ 271 (344)
+..++|+||||.+..+..+|+..|.+||.|.++.|+ ++|+||.|.-.++|..|+..|+| .++.|++|+|..+.++..
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--kdy~fvh~d~~eda~~air~l~~-~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--KDYAFVHFDRAEDAVEAIRGLDN-TEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee--cceeEEEEeeccchHHHHhcccc-cccccceeeeeeeccccc
Confidence 457899999999999999999999999999999999 68999999999999999999977 499999999999887654
Q ss_pred CC
Q 048750 272 RP 273 (344)
Q Consensus 272 ~~ 273 (344)
..
T Consensus 153 ta 154 (346)
T KOG0109|consen 153 TA 154 (346)
T ss_pred cC
Confidence 43
No 63
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.76 E-value=2.9e-08 Score=94.84 Aligned_cols=76 Identities=24% Similarity=0.339 Sum_probs=69.1
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhh-cCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFY-AHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~-~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
...+++||.|||++..+.+|+++|. +-|+|+.|.++.+ +|||.|+|+++|.+++|++.| +++.++||.|.|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~l-nk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKL-NKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHh-hhccccCceEEEec
Confidence 4467799999999999999999996 6799999999987 899999999999999999999 77899999999987
Q ss_pred cCC
Q 048750 266 GKP 268 (344)
Q Consensus 266 ak~ 268 (344)
...
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 554
No 64
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.76 E-value=1e-08 Score=100.50 Aligned_cols=73 Identities=34% Similarity=0.574 Sum_probs=67.3
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCC
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKP 268 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~ 268 (344)
..||||||+..++|++|+.+|+.||.|..|.+..+ +||+||+|.+.+.|.+|++.|+| +.|-|+.|+|.....
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lng-felAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNG-FELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcc-ceecCceEEEEEeee
Confidence 34999999999999999999999999999998886 89999999999999999999966 899999999987543
No 65
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=2.9e-08 Score=96.39 Aligned_cols=80 Identities=25% Similarity=0.454 Sum_probs=71.1
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCC
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~ 270 (344)
+.+||.||+++++..+|.++|+.||+|+++++..+ +|| ||.|++.++|.+|++.++| ..++|+.|.|.....+.
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng-~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNG-MLLNGKKIYVGLFERKE 154 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcC-cccCCCeeEEeeccchh
Confidence 34999999999999999999999999999999986 789 9999999999999999966 49999999998887766
Q ss_pred CCCCCC
Q 048750 271 QRPEGE 276 (344)
Q Consensus 271 ~~~~~~ 276 (344)
.+....
T Consensus 155 er~~~~ 160 (369)
T KOG0123|consen 155 EREAPL 160 (369)
T ss_pred hhcccc
Confidence 655443
No 66
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.6e-08 Score=92.96 Aligned_cols=77 Identities=22% Similarity=0.397 Sum_probs=70.4
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
+...|||-.|.+-+++++|.-+|+.||.|.++.|+++ -.||||+|.+.++.++|.-.|+| +.|++++|.|.|+
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdN-vLIDDrRIHVDFS 316 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDN-VLIDDRRIHVDFS 316 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcc-eeeccceEEeehh
Confidence 3579999999999999999999999999999999997 35999999999999999999977 6999999999998
Q ss_pred CCCC
Q 048750 267 KPQT 270 (344)
Q Consensus 267 k~~~ 270 (344)
.+-.
T Consensus 317 QSVs 320 (479)
T KOG0415|consen 317 QSVS 320 (479)
T ss_pred hhhh
Confidence 6543
No 67
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.68 E-value=6.2e-08 Score=84.52 Aligned_cols=83 Identities=25% Similarity=0.400 Sum_probs=72.4
Q ss_pred CCCCCCCCccEEEeccCCCCCCHHHHHHHhhcC-CCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECC
Q 048750 186 LEPPEDESIKTLYVGGVDARITEQDLRDNFYAH-GEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKG 258 (344)
Q Consensus 186 ~~~p~d~~~~tLfVgnL~~~~te~~L~~~F~~f-G~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g 258 (344)
...|......-+||+.++..+.+.++..+|.+| |.|..+++.++ +|||||+|.+.+.|+-|.+.||| ..+.+
T Consensus 41 ~~~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNN-YLl~e 119 (214)
T KOG4208|consen 41 REKPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNN-YLLME 119 (214)
T ss_pred ccCCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhh-hhhhh
Confidence 344566677889999999999999999999999 78888888675 89999999999999999999966 68999
Q ss_pred eEEEEEEcCCC
Q 048750 259 LRLKLMWGKPQ 269 (344)
Q Consensus 259 ~~l~V~~ak~~ 269 (344)
+.|.|.+-.|.
T Consensus 120 ~lL~c~vmppe 130 (214)
T KOG4208|consen 120 HLLECHVMPPE 130 (214)
T ss_pred heeeeEEeCch
Confidence 99999987665
No 68
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=7.1e-08 Score=93.64 Aligned_cols=73 Identities=30% Similarity=0.574 Sum_probs=66.4
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCCC
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ---KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQ 271 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~---kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~~ 271 (344)
.+|||| ++++|..|.+.|+.+|.|++|+|.++ -|||||+|.+.++|++|+++|+ ...++|++++|.|+.....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n-~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMN-FDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcC-CcccCCcEEEeehhccCCc
Confidence 479999 89999999999999999999999987 6899999999999999999994 4699999999999876543
No 69
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=2.4e-07 Score=86.86 Aligned_cols=76 Identities=22% Similarity=0.419 Sum_probs=69.3
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
.+...+|||..++++++|+||+..|+.||+|.++.+.+. +||+||+|.+..+...|+..| |-+.++|.-|+|-
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM-NlFDLGGQyLRVG 285 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM-NLFDLGGQYLRVG 285 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc-chhhcccceEecc
Confidence 355789999999999999999999999999999999874 899999999999999999999 6678999999997
Q ss_pred EcC
Q 048750 265 WGK 267 (344)
Q Consensus 265 ~ak 267 (344)
-+-
T Consensus 286 k~v 288 (544)
T KOG0124|consen 286 KCV 288 (544)
T ss_pred ccc
Confidence 654
No 70
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.57 E-value=6.3e-07 Score=79.13 Aligned_cols=83 Identities=23% Similarity=0.360 Sum_probs=66.7
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeC-C------CCEEEEEeCCHHHHHHHHHHhCCCeEEC---CeEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHP-Q------KAFAFVTYTTREGAEKAAEELSNKLVIK---GLRL 261 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~-~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~---g~~l 261 (344)
...+||||.+||.++.-.+|..+|..|---+...+.. + +-+|||+|.+..+|+.|+.+|+| +.++ +..|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNG-vrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNG-VRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcC-eeeccccCcee
Confidence 4589999999999999999999999985444433332 1 35999999999999999999955 6775 6789
Q ss_pred EEEEcCCCCCCCCC
Q 048750 262 KLMWGKPQTQRPEG 275 (344)
Q Consensus 262 ~V~~ak~~~~~~~~ 275 (344)
+++++|+..+....
T Consensus 111 hiElAKSNtK~kr~ 124 (284)
T KOG1457|consen 111 HIELAKSNTKRKRR 124 (284)
T ss_pred EeeehhcCcccccC
Confidence 99999987665444
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.54 E-value=2.1e-07 Score=93.81 Aligned_cols=71 Identities=31% Similarity=0.516 Sum_probs=66.5
Q ss_pred EEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCC---------CEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQK---------AFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 196 tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~k---------g~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
+|||.||+++.+.++|..+|...|.|.++.|...+ |||||+|.+.++|+.|+..|++ ..|+|+.|.|+++
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqg-tvldGH~l~lk~S 595 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQG-TVLDGHKLELKIS 595 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcC-ceecCceEEEEec
Confidence 39999999999999999999999999999888753 9999999999999999999965 6999999999999
Q ss_pred C
Q 048750 267 K 267 (344)
Q Consensus 267 k 267 (344)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.52 E-value=1.1e-07 Score=95.89 Aligned_cols=82 Identities=24% Similarity=0.468 Sum_probs=74.3
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
+.+...+.|+|.|||+..+-.+|+.+|..||.|.+|+|... +|||||.|-+..+|.+|+++|. .+.+-||+|.
T Consensus 608 ~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~-STHlyGRrLV 686 (725)
T KOG0110|consen 608 SKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALG-STHLYGRRLV 686 (725)
T ss_pred ccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhc-ccceechhhh
Confidence 34555789999999999999999999999999999999875 8999999999999999999996 5789999999
Q ss_pred EEEcCCCCC
Q 048750 263 LMWGKPQTQ 271 (344)
Q Consensus 263 V~~ak~~~~ 271 (344)
++|++....
T Consensus 687 LEwA~~d~~ 695 (725)
T KOG0110|consen 687 LEWAKSDNT 695 (725)
T ss_pred eehhccchH
Confidence 999987553
No 73
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.51 E-value=5.2e-08 Score=87.67 Aligned_cols=122 Identities=25% Similarity=0.367 Sum_probs=80.6
Q ss_pred Cccccccc-cCCcCCCCCCCCCCCCCCCCCccccccccccccCCCChHHHhhhhccCCCCCCCCCCCCCccEEEec----
Q 048750 126 RAHVCSFY-VRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVG---- 200 (344)
Q Consensus 126 ~~~~C~ff-~~G~C~rG~~Cpy~H~~p~~~~~~~~~i~d~~~g~~~p~a~k~l~~~~~~~~~~~p~d~~~~tLfVg---- 200 (344)
...-|+|| ..|.|..|+.|...|+.|+-++. ++++.+...+...... .|. .-.+..
T Consensus 14 dKv~c~fy~k~gacR~gdrcsR~h~kpt~s~t---------------~ll~nmyq~P~~~~~~--~d~--~~~~~~de~~ 74 (260)
T KOG2202|consen 14 DKVNCSFYFKIGACRHGDRCSRLHEKPTFSQT---------------VLLKNMYQNPENSWER--RDA--QGQFLTDEEL 74 (260)
T ss_pred cccccchHHhhcccccccHHHHhhcccccchH---------------HHHHHHHhCCCCCchh--hhh--ccccccHHHH
Confidence 45679999 88999999999999999975542 1112222222111110 000 000000
Q ss_pred cCCCCCCHHHHHHHhh-cCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 201 GVDARITEQDLRDNFY-AHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 201 nL~~~~te~~L~~~F~-~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
.+..+-.-++|...|+ +||+|+++.|..+ .|-+||.|...++|++|++.|+|. +++|++|...+..
T Consensus 75 q~~~defyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnR-w~~G~pi~ae~~p 146 (260)
T KOG2202|consen 75 QRHEDEFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNR-WYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCc-cccCCcceeeecC
Confidence 0001111244555555 9999999988776 789999999999999999999886 9999999988764
No 74
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.42 E-value=4.7e-07 Score=89.17 Aligned_cols=77 Identities=23% Similarity=0.379 Sum_probs=69.9
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
..++|||.+|...+...+|+.+|++||.|+-.+|+.+ +.|+||++.+.++|.+.|+.|+. ..+.|+-|.|+-+
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHr-TELHGrmISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHR-TELHGRMISVEKA 482 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhh-hhhcceeeeeeec
Confidence 3678999999999999999999999999999999987 67999999999999999999954 6999999999988
Q ss_pred CCCC
Q 048750 267 KPQT 270 (344)
Q Consensus 267 k~~~ 270 (344)
+...
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 7543
No 75
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.42 E-value=2.8e-07 Score=86.92 Aligned_cols=79 Identities=23% Similarity=0.429 Sum_probs=69.6
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
+..+||||+|+++++++.|+++|++||+|.++.++.+ ++|+||+|++.+...+++..- .+.|+|+.|.++-+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~--~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNAR--THKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccc--ccccCCccccceec
Confidence 5789999999999999999999999999999999986 799999999999888887543 46899999999988
Q ss_pred CCCCCCC
Q 048750 267 KPQTQRP 273 (344)
Q Consensus 267 k~~~~~~ 273 (344)
.++....
T Consensus 83 v~r~~~~ 89 (311)
T KOG4205|consen 83 VSREDQT 89 (311)
T ss_pred cCccccc
Confidence 8776433
No 76
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.40 E-value=6.4e-07 Score=87.63 Aligned_cols=78 Identities=21% Similarity=0.321 Sum_probs=68.2
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCC------CEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQK------AFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~k------g~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
...+|||.|||.++++.+|.++|..||.|+...|.... .||||+|.+.++++.|+++- .+.+++++|.|+..
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As--p~~ig~~kl~Veek 364 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS--PLEIGGRKLNVEEK 364 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC--ccccCCeeEEEEec
Confidence 35569999999999999999999999999998877642 79999999999999999874 67999999999988
Q ss_pred CCCCCC
Q 048750 267 KPQTQR 272 (344)
Q Consensus 267 k~~~~~ 272 (344)
++....
T Consensus 365 ~~~~~g 370 (419)
T KOG0116|consen 365 RPGFRG 370 (419)
T ss_pred cccccc
Confidence 875544
No 77
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.35 E-value=8.1e-07 Score=85.14 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=67.4
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
..+..++|||.|||.+.|+..|++-|.+||.|..+.|+.+ +.-+.|.|.++++||+|+..|++ ..++|+.|+|.+.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mng-s~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNG-SRLDGRNIKVTYF 608 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhcc-CcccCceeeeeeC
Confidence 3456778999999999999999999999999999999765 55669999999999999999965 6999999999873
No 78
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.32 E-value=2e-06 Score=78.27 Aligned_cols=79 Identities=19% Similarity=0.356 Sum_probs=70.6
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
+...++|+|.||+..++++||+++|..||.+..+.|..+ .|.|-|.|...++|+.|++.+++ +.++|+.|++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~g-v~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNG-VALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcC-cccCCceeeeEE
Confidence 344589999999999999999999999999999988886 58999999999999999999977 899999999887
Q ss_pred cCCCC
Q 048750 266 GKPQT 270 (344)
Q Consensus 266 ak~~~ 270 (344)
..+..
T Consensus 159 i~~~~ 163 (243)
T KOG0533|consen 159 ISSPS 163 (243)
T ss_pred ecCcc
Confidence 66543
No 79
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.32 E-value=5.5e-07 Score=80.31 Aligned_cols=72 Identities=26% Similarity=0.475 Sum_probs=65.8
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
..+|||+|++.+.+.+|..+|..||.|.++.+. .||+||.|.+..+|+.|+..+++. ++.|..+.|+|++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--~gf~fv~fed~rda~Dav~~l~~~-~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--NGFGFVEFEDPRDADDAVHDLDGK-ELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--cccceeccCchhhhhcccchhcCc-eecceeeeeeccccc
Confidence 368999999999999999999999999999887 689999999999999999999765 888888999999863
No 80
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.29 E-value=1.2e-06 Score=82.75 Aligned_cols=79 Identities=22% Similarity=0.468 Sum_probs=70.5
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
...++|||+|+.++++++++++|.+||.|..+.++.+ ++|+||+|.+++++++++.. .-+.|+|+.+.|.-|
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~--~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ--KFHDFNGKKVEVKRA 173 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc--ceeeecCceeeEeec
Confidence 4679999999999999999999999999999988876 89999999999999999864 346899999999999
Q ss_pred CCCCCCC
Q 048750 267 KPQTQRP 273 (344)
Q Consensus 267 k~~~~~~ 273 (344)
.|+....
T Consensus 174 ~pk~~~~ 180 (311)
T KOG4205|consen 174 IPKEVMQ 180 (311)
T ss_pred cchhhcc
Confidence 8876654
No 81
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=98.26 E-value=9.8e-07 Score=85.43 Aligned_cols=77 Identities=29% Similarity=0.386 Sum_probs=63.1
Q ss_pred CCccEEEeccCCCCC-CHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCC
Q 048750 192 ESIKTLYVGGVDARI-TEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~-te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~ 270 (344)
...+.|-+.-.+..+ +.++|..+|.+||+|..|.|-...-.|.|+|.++.+|-.|... ....|+++.|+|.|.++..
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~s--~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYAS--HGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhcc--ccceecCceeEEEEecCCc
Confidence 345566666666666 5689999999999999999988778899999999999777642 4579999999999999844
No 82
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=1.3e-06 Score=86.21 Aligned_cols=73 Identities=30% Similarity=0.406 Sum_probs=65.6
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
+.+....+|+|-|||.++++++|+.+|+.||+|+.|+.-.. +|..||+|-|..+|+.|+++|+. ..+.|+.|+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~-~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNR-REIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHH-HHhhhhhhc
Confidence 34677899999999999999999999999999999887665 89999999999999999999965 488888877
No 83
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.07 E-value=1.6e-05 Score=74.50 Aligned_cols=83 Identities=27% Similarity=0.342 Sum_probs=69.8
Q ss_pred CCCCCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeE--------EEEeCC-----CCEEEEEeCCHHHHHHHHHHhCC
Q 048750 186 LEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIES--------IKMHPQ-----KAFAFVTYTTREGAEKAAEELSN 252 (344)
Q Consensus 186 ~~~p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~--------v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~ 252 (344)
...++...++.|||.|||.++|-+++.++|+++|-|.+ |++-.+ +|=|.+.|..+++.+.|+..|++
T Consensus 126 ~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe 205 (382)
T KOG1548|consen 126 WFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDE 205 (382)
T ss_pred ccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCc
Confidence 33445667888999999999999999999999998764 444443 78999999999999999999955
Q ss_pred CeEECCeEEEEEEcCCC
Q 048750 253 KLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 253 ~~~i~g~~l~V~~ak~~ 269 (344)
..+.|+.|+|+-|+-+
T Consensus 206 -~~~rg~~~rVerAkfq 221 (382)
T KOG1548|consen 206 -DELRGKKLRVERAKFQ 221 (382)
T ss_pred -ccccCcEEEEehhhhh
Confidence 6999999999988743
No 84
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.00 E-value=3e-06 Score=74.74 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=64.9
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
...+||||+|+...++|+-|.++|-+-|.|..|.|... ..||||.|.++.+...|++.++| ..+.+..+.|.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng-~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENG-DDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhccc-chhccchhhcccc
Confidence 34789999999999999999999999999999998775 34999999999999999998854 6888887777764
No 85
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.98 E-value=1e-05 Score=73.67 Aligned_cols=77 Identities=23% Similarity=0.399 Sum_probs=68.5
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
+.+.+++||||+...++-+++..+|+.+|.|..+.|..+ +||+||+|.+.+.++.|+. |++ ..|.|+.+.|.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~g-s~i~~~~i~vt 175 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDG-SEIPGPAIEVT 175 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCC-cccccccceee
Confidence 345789999999999988889999999999998888775 7899999999999999998 855 59999999999
Q ss_pred EcCCC
Q 048750 265 WGKPQ 269 (344)
Q Consensus 265 ~ak~~ 269 (344)
|.+-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 98765
No 86
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.97 E-value=4.6e-05 Score=72.83 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=69.5
Q ss_pred ccEEEeccCC-CCCCHHHHHHHhhcCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCCC
Q 048750 194 IKTLYVGGVD-ARITEQDLRDNFYAHGEIESIKMHPQ-KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQ 271 (344)
Q Consensus 194 ~~tLfVgnL~-~~~te~~L~~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~~ 271 (344)
+..|.|.||. +.+|.+.|..+|+-||+|.+|+|+.+ +.-|.|.|.+...|+-|++.|++ +.+.|++|+|.++|-...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g-~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEG-HKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhc-ceecCceEEEeeccCccc
Confidence 6788999996 56799999999999999999999997 56899999999999999999955 689999999999986554
Q ss_pred C
Q 048750 272 R 272 (344)
Q Consensus 272 ~ 272 (344)
.
T Consensus 376 q 376 (492)
T KOG1190|consen 376 Q 376 (492)
T ss_pred c
Confidence 3
No 87
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.89 E-value=3.1e-05 Score=53.94 Aligned_cols=52 Identities=25% Similarity=0.480 Sum_probs=44.8
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHH
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAA 247 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~ 247 (344)
+.|-|.|.+.+.. +++..+|..||+|..+.+.....+.||.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 4677888887766 456679999999999999877899999999999999984
No 88
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.87 E-value=7.6e-05 Score=58.58 Aligned_cols=74 Identities=16% Similarity=0.256 Sum_probs=60.5
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcC--CCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEEC----CeEEE
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAH--GEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIK----GLRLK 262 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~f--G~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~----g~~l~ 262 (344)
+||-|.|||...+.++|.+++.+. |....+-+..+ .|||||.|.+.+.|.+..+.++|. .+. .+...
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~-~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGK-KWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCC-ccccCCCCcEEE
Confidence 689999999999999999888653 66666665554 799999999999999999999775 443 46778
Q ss_pred EEEcCCC
Q 048750 263 LMWGKPQ 269 (344)
Q Consensus 263 V~~ak~~ 269 (344)
|.||+-+
T Consensus 81 i~yAriQ 87 (97)
T PF04059_consen 81 ISYARIQ 87 (97)
T ss_pred EehhHhh
Confidence 8888754
No 89
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.85 E-value=6.2e-05 Score=56.85 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=47.2
Q ss_pred ccEEEeccCCCCCCHHH----HHHHhhcC-CCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCC
Q 048750 194 IKTLYVGGVDARITEQD----LRDNFYAH-GEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKP 268 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~----L~~~F~~f-G~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~ 268 (344)
.+.|||.|||.+.+-.. |+.++..+ |.|.+|. .+.|+|.|.+.+.|++|.+.|.|. .+-|.+|.|+|..-
T Consensus 2 ~s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----~~tAilrF~~~~~A~RA~KRmegE-dVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 2 HSLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----GGTAILRFPNQEFAERAQKRMEGE-DVFGNKISVSFSPK 76 (90)
T ss_dssp SEEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT---SSSS--EEESS--
T ss_pred ccEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----CCEEEEEeCCHHHHHHHHHhhccc-ccccceEEEEEcCC
Confidence 35799999999887655 55666667 4777763 689999999999999999999775 88899999998743
No 90
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.85 E-value=5.6e-05 Score=60.41 Aligned_cols=69 Identities=29% Similarity=0.489 Sum_probs=44.8
Q ss_pred EEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCC----CeEECCeEEEEE
Q 048750 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSN----KLVIKGLRLKLM 264 (344)
Q Consensus 196 tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~----~~~i~g~~l~V~ 264 (344)
.|.|.+++..++.++|++.|++||.|..|.+.....-|||.|.+.+.|+.|++.+.. .+.+.+..+.++
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 578888999999999999999999999999999888999999999999999998732 244555544433
No 91
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.75 E-value=2.8e-05 Score=70.10 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=65.2
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
.+....+||.|.|..+++++.|...|.+|-.-...+++++ +||+||.|.+.+++..|+..|+++ .++.+.|++
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gk-yVgsrpikl 264 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGK-YVGSRPIKL 264 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccc-ccccchhHh
Confidence 3556789999999999999999999999977666666665 899999999999999999999776 889998877
Q ss_pred EE
Q 048750 264 MW 265 (344)
Q Consensus 264 ~~ 265 (344)
+-
T Consensus 265 Rk 266 (290)
T KOG0226|consen 265 RK 266 (290)
T ss_pred hh
Confidence 63
No 92
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.60 E-value=0.00028 Score=62.84 Aligned_cols=76 Identities=18% Similarity=0.310 Sum_probs=67.0
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeEEC-CeEEEEEEcC
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-KAFAFVTYTTREGAEKAAEELSNKLVIK-GLRLKLMWGK 267 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~A~~A~~~l~~~~~i~-g~~l~V~~ak 267 (344)
......||+.|||.+++.+.|..+|.+|.-...|+++.. ++.|||+|.+...|..|...+++- .|- ...++|.+++
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~-~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGF-KITKKNTMQITFAK 220 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccc-eeccCceEEecccC
Confidence 456889999999999999999999999999999999985 889999999999999999999764 444 7788888765
No 93
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.52 E-value=0.0001 Score=65.40 Aligned_cols=62 Identities=19% Similarity=0.335 Sum_probs=53.3
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC--CCEEEEEeCCHHHHHHHHHHhCCC
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ--KAFAFVTYTTREGAEKAAEELSNK 253 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~--kg~aFV~F~~~~~A~~A~~~l~~~ 253 (344)
.-.+||||.||...++|++|+.+|+.|.....++|... ...|||.|++.+.|..|+..|+|.
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcc
Confidence 45789999999999999999999999987666666554 348999999999999999988764
No 94
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.47 E-value=0.00044 Score=54.62 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=53.7
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEE-------------EeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCe
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIK-------------MHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGL 259 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~-------------i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~ 259 (344)
..+.|.|-+.|+..+ ..|.++|++||+|.+.. +....++-.|+|+++.+|.+|+.. |+.+++|.
T Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~--NG~i~~g~ 81 (100)
T PF05172_consen 5 SETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK--NGTIFSGS 81 (100)
T ss_dssp GCCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT--TTEEETTC
T ss_pred CCeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh--CCeEEcCc
Confidence 356788889998854 67888999999999885 555688999999999999999963 66788875
Q ss_pred -EEEEEEcCC
Q 048750 260 -RLKLMWGKP 268 (344)
Q Consensus 260 -~l~V~~ak~ 268 (344)
-+-|.|.++
T Consensus 82 ~mvGV~~~~~ 91 (100)
T PF05172_consen 82 LMVGVKPCDP 91 (100)
T ss_dssp EEEEEEE-HH
T ss_pred EEEEEEEcHH
Confidence 566888754
No 95
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.46 E-value=9.3e-05 Score=66.17 Aligned_cols=72 Identities=29% Similarity=0.503 Sum_probs=63.0
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
..+...|+|.++...+.+.+|.++|..+|.+....+ ..+++||+|+..++|.+|++.+++ ..+.++.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~-~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDG-KKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccc-hhhcCceeeecc
Confidence 356788999999999999999999999999955544 578999999999999999999977 499999999943
No 96
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.42 E-value=0.0032 Score=59.91 Aligned_cols=81 Identities=22% Similarity=0.256 Sum_probs=65.6
Q ss_pred CccEEEeccC--CCCCCHHHHHHHhhcCCCeeEEEEeCCCC-EEEEEeCCHHHHHHHHHHhCCCeEECC-eEEEEEEcCC
Q 048750 193 SIKTLYVGGV--DARITEQDLRDNFYAHGEIESIKMHPQKA-FAFVTYTTREGAEKAAEELSNKLVIKG-LRLKLMWGKP 268 (344)
Q Consensus 193 ~~~tLfVgnL--~~~~te~~L~~~F~~fG~I~~v~i~~~kg-~aFV~F~~~~~A~~A~~~l~~~~~i~g-~~l~V~~ak~ 268 (344)
.++.|.+.=| -..+|-+-|..+-...|.|.+|.|.+..| -|.|+|++.+.|++|.++|+|--++.| ..|+|+||||
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 3555555544 35688899999999999999999998755 699999999999999999977545555 6999999999
Q ss_pred CCCCC
Q 048750 269 QTQRP 273 (344)
Q Consensus 269 ~~~~~ 273 (344)
.+..-
T Consensus 199 ~rlnV 203 (494)
T KOG1456|consen 199 TRLNV 203 (494)
T ss_pred ceeee
Confidence 76543
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.39 E-value=0.00033 Score=65.57 Aligned_cols=73 Identities=26% Similarity=0.544 Sum_probs=60.2
Q ss_pred ccEEEeccCCCCCCHHH----H--HHHhhcCCCeeEEEEeCC-------CCEE--EEEeCCHHHHHHHHHHhCCCeEECC
Q 048750 194 IKTLYVGGVDARITEQD----L--RDNFYAHGEIESIKMHPQ-------KAFA--FVTYTTREGAEKAAEELSNKLVIKG 258 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~----L--~~~F~~fG~I~~v~i~~~-------kg~a--FV~F~~~~~A~~A~~~l~~~~~i~g 258 (344)
..-+||-+|++.+..++ | .++|.+||.|..|.|.+. .+.+ ||+|.+.++|.++|...++ .+++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDg-s~~DG 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDG-SLLDG 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcc-ccccC
Confidence 34679999988876555 2 489999999999998875 2333 9999999999999999966 59999
Q ss_pred eEEEEEEcC
Q 048750 259 LRLKLMWGK 267 (344)
Q Consensus 259 ~~l~V~~ak 267 (344)
|.|+..|+.
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999999875
No 98
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.36 E-value=0.001 Score=62.63 Aligned_cols=66 Identities=21% Similarity=0.339 Sum_probs=53.4
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCC--CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeE
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHG--EIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLR 260 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG--~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~ 260 (344)
.-.+|||||-+.+|++||.+.+...| .+.++++..+ +|||.|...+..+.++-++.|-. ..|+|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~-k~iHGQ~ 153 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPT-KTIHGQS 153 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccc-ceecCCC
Confidence 45789999999999999999887776 4555555553 89999999999999999998844 4777754
No 99
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.27 E-value=0.00021 Score=42.15 Aligned_cols=24 Identities=33% Similarity=1.020 Sum_probs=21.5
Q ss_pred CccccccccCCcCCCCCCCCCCCC
Q 048750 126 RAHVCSFYVRGECTRGAECPYRHE 149 (344)
Q Consensus 126 ~~~~C~ff~~G~C~rG~~Cpy~H~ 149 (344)
+..+|.+|..|.|.+|+.|+|.|.
T Consensus 3 k~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 3 KTELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCcCcCccCCCCCCCCCcCCCCc
Confidence 345899999999999999999996
No 100
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.24 E-value=0.002 Score=61.50 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=60.2
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCC-eeE--EEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGE-IES--IKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~-I~~--v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
..+..-|.+.+||.+.+-++|.++|..|-. |.. |.++.+ .|-|||+|.+.+.|..|+...++. ...+|-|.
T Consensus 277 ~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~-~mk~RYiE 355 (508)
T KOG1365|consen 277 TRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKK-LMKSRYIE 355 (508)
T ss_pred CCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHh-hcccceEE
Confidence 344567888999999999999999999863 333 566654 789999999999999999988664 56788888
Q ss_pred EEEc
Q 048750 263 LMWG 266 (344)
Q Consensus 263 V~~a 266 (344)
|.-+
T Consensus 356 vfp~ 359 (508)
T KOG1365|consen 356 VFPC 359 (508)
T ss_pred Eeec
Confidence 8744
No 101
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.02 E-value=0.00013 Score=43.38 Aligned_cols=23 Identities=35% Similarity=1.091 Sum_probs=17.3
Q ss_pred ccccccccC-CcCCCCCCCCCCCC
Q 048750 127 AHVCSFYVR-GECTRGAECPYRHE 149 (344)
Q Consensus 127 ~~~C~ff~~-G~C~rG~~Cpy~H~ 149 (344)
..+|.+|.+ |.|.+|+.|.|.|.
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSS
T ss_pred cccChhhccCCccCCCCCcCccCC
Confidence 468999955 99999999999995
No 102
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.02 E-value=0.0022 Score=61.70 Aligned_cols=77 Identities=18% Similarity=0.218 Sum_probs=65.1
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-CC-EEEEEeCCHHHHHHHHHHhCCCeEECC-eEEEEEEcCCC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-KA-FAFVTYTTREGAEKAAEELSNKLVIKG-LRLKLMWGKPQ 269 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-kg-~aFV~F~~~~~A~~A~~~l~~~~~i~g-~~l~V~~ak~~ 269 (344)
..-.++|+++-.-++-+-|..+|++||.|..|.-..+ .+ -|.|.|.+.+.|..|..+|+|+-+.+| ..|+|.|++-.
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt 228 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLT 228 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcc
Confidence 4556788999999999999999999999999865543 44 488999999999999999999888888 58888888743
No 103
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.96 E-value=0.0032 Score=61.88 Aligned_cols=75 Identities=20% Similarity=0.304 Sum_probs=61.0
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKP 268 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~ 268 (344)
+..-|-+.+||++.|++||.++|+..+ |+++.+.+. .|-|||+|.+.+++++|++. ++..+..|-|.|--+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk--dR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK--DRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHh--hHHHhCCceEEEEccCC
Confidence 344566689999999999999999884 677777664 78999999999999999985 45678888888877654
Q ss_pred CC
Q 048750 269 QT 270 (344)
Q Consensus 269 ~~ 270 (344)
..
T Consensus 86 ~e 87 (510)
T KOG4211|consen 86 AE 87 (510)
T ss_pred cc
Confidence 33
No 104
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.88 E-value=0.00098 Score=64.32 Aligned_cols=60 Identities=28% Similarity=0.336 Sum_probs=54.8
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-------------------CCEEEEEeCCHHHHHHHHHHhC
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-------------------KAFAFVTYTTREGAEKAAEELS 251 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-------------------kg~aFV~F~~~~~A~~A~~~l~ 251 (344)
-..++|.+-|||.+-..+.|.++|+.+|.|.+|+|+.. +-||+|+|...+.|.+|.+.++
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 36889999999999988999999999999999999874 4599999999999999999884
No 105
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.83 E-value=0.00068 Score=65.28 Aligned_cols=79 Identities=29% Similarity=0.420 Sum_probs=65.5
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCCCCC
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRP 273 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~~~~ 273 (344)
..||+|||.+.++..+|..+|...-.-.+-.++...||+||.+.+...|.+|++.++++..+.|+++.|..+-++..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrs 80 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRS 80 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHh
Confidence 4789999999999999999997552222223344579999999999999999999999999999999999988766544
No 106
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.82 E-value=0.0045 Score=58.40 Aligned_cols=78 Identities=13% Similarity=0.230 Sum_probs=62.9
Q ss_pred CCccEEEeccCC--C--CCC-------HHHHHHHhhcCCCeeEEEEe--CCCCEEEEEeCCHHHHHHHHHHhCCCeEECC
Q 048750 192 ESIKTLYVGGVD--A--RIT-------EQDLRDNFYAHGEIESIKMH--PQKAFAFVTYTTREGAEKAAEELSNKLVIKG 258 (344)
Q Consensus 192 ~~~~tLfVgnL~--~--~~t-------e~~L~~~F~~fG~I~~v~i~--~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g 258 (344)
+..++|.+.|+- . ..+ +++|++--++||.|.+|.|. +..|.+-|.|.+.++|..+++.|+|+ +++|
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR-~fdg 341 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGR-WFDG 341 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCe-eecc
Confidence 456788888883 1 122 35667778999999999998 55899999999999999999999886 9999
Q ss_pred eEEEEEEcCCCC
Q 048750 259 LRLKLMWGKPQT 270 (344)
Q Consensus 259 ~~l~V~~ak~~~ 270 (344)
|.|.-+......
T Consensus 342 Rql~A~i~DG~t 353 (382)
T KOG1548|consen 342 RQLTASIWDGKT 353 (382)
T ss_pred eEEEEEEeCCcc
Confidence 999887665443
No 107
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.76 E-value=0.0018 Score=67.60 Aligned_cols=86 Identities=21% Similarity=0.395 Sum_probs=74.2
Q ss_pred CCCCCCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECC--eEEE
Q 048750 185 SLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKG--LRLK 262 (344)
Q Consensus 185 ~~~~p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g--~~l~ 262 (344)
+++-+.....+.+||++|..+.....|...|..||.|..|.+-+..-||+|.|.+...|..|++.|.+ .-++| ++|+
T Consensus 446 glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rg-ap~G~P~~r~r 524 (975)
T KOG0112|consen 446 GLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRG-APLGGPPRRLR 524 (975)
T ss_pred cccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhc-CcCCCCCcccc
Confidence 44444556688999999999999999999999999999999999899999999999999999999955 46665 7899
Q ss_pred EEEcCCCCC
Q 048750 263 LMWGKPQTQ 271 (344)
Q Consensus 263 V~~ak~~~~ 271 (344)
|.++.+...
T Consensus 525 vdla~~~~~ 533 (975)
T KOG0112|consen 525 VDLASPPGA 533 (975)
T ss_pred cccccCCCC
Confidence 999986543
No 108
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.69 E-value=0.0032 Score=62.62 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=51.6
Q ss_pred HHHHHHhhcCCCeeEEEEeCCC-CEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 209 QDLRDNFYAHGEIESIKMHPQK-AFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 209 ~~L~~~F~~fG~I~~v~i~~~k-g~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
+|+.+..++||.|..|.|..+. ||.||.|.+.+.|..|+.+|++. ++.|+-|...|-.
T Consensus 468 edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgr-WF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 468 EDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGR-WFAGRMITAKYLP 526 (549)
T ss_pred HHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhh-hhccceeEEEEee
Confidence 5566667999999999999886 99999999999999999999886 9999999988753
No 109
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.67 E-value=0.0016 Score=65.06 Aligned_cols=81 Identities=19% Similarity=0.378 Sum_probs=71.9
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
...++||++|+..+++..++++...||.+....++.+ +||||-+|.+......|+..|+| ..++++.|.|..|
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnG-m~lgd~~lvvq~A 366 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNG-MQLGDKKLVVQRA 366 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccch-hhhcCceeEeehh
Confidence 4568999999999999999999999999999988875 89999999999999999999955 5899999999988
Q ss_pred CCCCCCCC
Q 048750 267 KPQTQRPE 274 (344)
Q Consensus 267 k~~~~~~~ 274 (344)
-.......
T Consensus 367 ~~g~~~~~ 374 (500)
T KOG0120|consen 367 IVGASNAN 374 (500)
T ss_pred hccchhcc
Confidence 77665443
No 110
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.58 E-value=0.0075 Score=59.34 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=56.8
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeE-EEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIES-IKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~-v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
....|-+.+||+.++++||.++|+-.--|.. |.++.+ .|-|||.|++.+.|++|+..- +..|+.|-|.|.-+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rh--re~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRH--RENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHH--HHhhccceEEeehh
Confidence 4567888999999999999999987754444 333332 578999999999999999763 45788888888754
Q ss_pred C
Q 048750 267 K 267 (344)
Q Consensus 267 k 267 (344)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 3
No 111
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.58 E-value=0.0031 Score=60.30 Aligned_cols=71 Identities=15% Similarity=0.344 Sum_probs=57.5
Q ss_pred EEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC---------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ---------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 196 tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~---------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
.|-|.||.+.++.+.++.+|.-.|.|.++.|..+ ...+||.|.+...+..|-. |-|.++|+--.|.+-++
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 7889999999999999999999999999999874 5689999999999888755 55654555444444444
Q ss_pred C
Q 048750 267 K 267 (344)
Q Consensus 267 k 267 (344)
.
T Consensus 88 ~ 88 (479)
T KOG4676|consen 88 D 88 (479)
T ss_pred C
Confidence 4
No 112
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.50 E-value=0.0042 Score=64.16 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=14.7
Q ss_pred cccccccccccCCCCCcHHHHHhhhcc
Q 048750 43 LKNVCQVCLLDLEYGLPVQVRDTALSI 69 (344)
Q Consensus 43 ~kn~cq~c~~dl~~~~p~~~rd~~l~~ 69 (344)
+=|.=-+-.-||+| -+.+|..++.+
T Consensus 311 ~INal~t~p~dldf--RlhlR~E~mr~ 335 (1102)
T KOG1924|consen 311 FINALVTSPSDLDF--RLHLRSEFMRD 335 (1102)
T ss_pred HHHHhcCCHHHhhH--HHHHHHHHHHH
Confidence 44444444557776 56677777654
No 113
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.50 E-value=0.0077 Score=60.28 Aligned_cols=60 Identities=18% Similarity=0.349 Sum_probs=51.7
Q ss_pred HHHHHHhhcCCCeeEEEEeCC---------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 209 QDLRDNFYAHGEIESIKMHPQ---------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 209 ~~L~~~F~~fG~I~~v~i~~~---------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
|+++.-+++||.|.+|.+.+. -|..||+|.+.+++++|.++|.|. .++||.|...|....
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~Gr-KF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGR-KFANRTVVASYYDED 492 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCc-eeCCcEEEEEecCHH
Confidence 456677789999999999875 578999999999999999999775 999999998887543
No 114
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.49 E-value=0.0019 Score=60.74 Aligned_cols=77 Identities=27% Similarity=0.530 Sum_probs=66.5
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
.+.++|++|+..+++++|+.+|..+|.|..+++... +++|||.|.+...+..++.. +. ..+.++.+.+....
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QT-RSIGGRPLRLEEDE 262 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-cc-CcccCcccccccCC
Confidence 344459999999999999999999999999999875 78999999999999999875 44 48899999999988
Q ss_pred CCCCC
Q 048750 268 PQTQR 272 (344)
Q Consensus 268 ~~~~~ 272 (344)
+....
T Consensus 263 ~~~~~ 267 (285)
T KOG4210|consen 263 PRPKS 267 (285)
T ss_pred CCccc
Confidence 86544
No 115
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.45 E-value=0.015 Score=50.54 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=63.6
Q ss_pred CCCCCCCCCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCC
Q 048750 182 EMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNK 253 (344)
Q Consensus 182 ~~~~~~~p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~ 253 (344)
..+...+|+..+.-.+.|.+||.+-+++||+++..+-|.|....+.++ |.+.|+|...++.+-|+..|.+.
T Consensus 103 ~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~GvV~~~r~eDMkYAvr~ld~~ 173 (241)
T KOG0105|consen 103 GGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GVGVVEYLRKEDMKYAVRKLDDQ 173 (241)
T ss_pred CCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-cceeeeeeehhhHHHHHHhhccc
Confidence 345567788889999999999999999999999999999999888775 69999999999999999999765
No 116
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.24 E-value=0.0063 Score=61.08 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=63.8
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhc-CCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeE--ECCeEEEEEEcC
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYA-HGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV--IKGLRLKLMWGK 267 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~-fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~--i~g~~l~V~~ak 267 (344)
......|||.||-.-+|.-.|+.++.+ .|.|++..|-+=+..+||.|.+.++|.....+|+|-.+ -+.+.|.+.|+.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 455778999999999999999999995 56677663333388999999999999999999977422 256889999987
Q ss_pred CCC
Q 048750 268 PQT 270 (344)
Q Consensus 268 ~~~ 270 (344)
...
T Consensus 521 ~de 523 (718)
T KOG2416|consen 521 ADE 523 (718)
T ss_pred hhH
Confidence 543
No 117
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.18 E-value=0.036 Score=46.56 Aligned_cols=57 Identities=23% Similarity=0.355 Sum_probs=45.0
Q ss_pred HHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCC
Q 048750 210 DLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 210 ~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~ 270 (344)
+|.+.|..||++.-|+++. +.-.|+|.+-++|-+|+. +++ ..++|+.|+|+...|.=
T Consensus 52 ~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaals-~dg-~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAALS-LDG-IQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHHH-GCC-SEETTEEEEEEE-----
T ss_pred HHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHHc-cCC-cEECCEEEEEEeCCccH
Confidence 6778889999999999985 578999999999999997 645 69999999999877643
No 118
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.10 E-value=0.0031 Score=57.19 Aligned_cols=67 Identities=21% Similarity=0.406 Sum_probs=57.2
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCC------------------CEEEEEeCCHHHHHHHHHHhCCCe
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQK------------------AFAFVTYTTREGAEKAAEELSNKL 254 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~k------------------g~aFV~F~~~~~A~~A~~~l~~~~ 254 (344)
..-.||+++||+.+.-..|+++|+.||.|-.|.+-... .-|.|+|.+-..|...++.|+|.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~- 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT- 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC-
Confidence 34589999999999999999999999999999987641 13679999999999999999775
Q ss_pred EECCeE
Q 048750 255 VIKGLR 260 (344)
Q Consensus 255 ~i~g~~ 260 (344)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 787753
No 119
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.09 E-value=0.037 Score=52.85 Aligned_cols=77 Identities=22% Similarity=0.263 Sum_probs=67.0
Q ss_pred CCccEEEeccCCC-CCCHHHHHHHhhcCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 192 ESIKTLYVGGVDA-RITEQDLRDNFYAHGEIESIKMHPQ-KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 192 ~~~~tLfVgnL~~-~~te~~L~~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
.+...+-|.+|+. .++-+.|..+|-.||.|+.|++++. .|-|.|++.+..+.++|+..|+|. .+-|.+|.|..++..
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~-~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNI-PLFGGKLNVCVSKQN 363 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccC-ccccceEEEeecccc
Confidence 4467889999974 5678899999999999999999986 689999999999999999999775 668888999988753
No 120
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.04 E-value=0.032 Score=46.52 Aligned_cols=75 Identities=17% Similarity=0.308 Sum_probs=58.5
Q ss_pred CCCccEEEeccCCCCC-CHHH---HHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 191 DESIKTLYVGGVDARI-TEQD---LRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~-te~~---L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
+....||.|.=|...+ ..+| +...++.||+|.+|.+. .+.-|.|.|.+..+|=+|+.+++. ..-|..+.+.|-
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s--~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS--RAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC--CCCCceEEeecc
Confidence 4457888887666555 2344 45566899999999875 477899999999999999999955 567889999996
Q ss_pred CC
Q 048750 267 KP 268 (344)
Q Consensus 267 k~ 268 (344)
..
T Consensus 160 qr 161 (166)
T PF15023_consen 160 QR 161 (166)
T ss_pred cc
Confidence 53
No 121
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.93 E-value=0.0078 Score=57.10 Aligned_cols=80 Identities=28% Similarity=0.330 Sum_probs=66.4
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeE--------EEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIES--------IKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVI 256 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~--------v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i 256 (344)
.....++||-+|+..+++++|.++|.++|.|.. |.|-.+ |+-|.|+|.+...|+.|++-++++ .+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk-df 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK-DF 141 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc-cc
Confidence 345779999999999999999999999998754 222222 899999999999999999998665 88
Q ss_pred CCeEEEEEEcCCCCC
Q 048750 257 KGLRLKLMWGKPQTQ 271 (344)
Q Consensus 257 ~g~~l~V~~ak~~~~ 271 (344)
.+..|+|..+..+..
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 889999998876553
No 122
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.87 E-value=0.032 Score=55.94 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=59.7
Q ss_pred CccEEEeccCCCCCC------HHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEE
Q 048750 193 SIKTLYVGGVDARIT------EQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRL 261 (344)
Q Consensus 193 ~~~tLfVgnL~~~~t------e~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l 261 (344)
-.+.++|.|+|.--. ..-|..+|+++|+|..+.+..+ +||.|++|.+..+|+.|++.++|..+..++.+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 356888999885322 2346789999999999988864 89999999999999999999988766677888
Q ss_pred EEEEc
Q 048750 262 KLMWG 266 (344)
Q Consensus 262 ~V~~a 266 (344)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 87644
No 123
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.64 E-value=0.037 Score=54.90 Aligned_cols=57 Identities=18% Similarity=0.410 Sum_probs=46.9
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeC---------CCC---EEEEEeCCHHHHHHHHHHh
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHP---------QKA---FAFVTYTTREGAEKAAEEL 250 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~---------~kg---~aFV~F~~~~~A~~A~~~l 250 (344)
-.+.||||+||++++|+.|...|..||.+. |.... .+| |+|+.|+++.+...-+.+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 367899999999999999999999999864 22321 267 9999999999888877765
No 124
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.56 E-value=0.0084 Score=32.52 Aligned_cols=18 Identities=44% Similarity=1.161 Sum_probs=15.7
Q ss_pred ccccccCCcCCCCCCCCCCC
Q 048750 129 VCSFYVRGECTRGAECPYRH 148 (344)
Q Consensus 129 ~C~ff~~G~C~rG~~Cpy~H 148 (344)
.|.||.. |..|+.|+|.|
T Consensus 1 ~Ck~~~~--C~~~~~C~f~H 18 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSH 18 (19)
T ss_pred CCcCcCC--CCCCCcCccCC
Confidence 4888865 99999999999
No 125
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.48 E-value=0.034 Score=55.20 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=53.1
Q ss_pred CccEEEeccCCCCCCHHHHHHHhh-cCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHh
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFY-AHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEEL 250 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~-~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l 250 (344)
..+|||||+||.-++.++|-.+|. -||.|..+-|-.+ +|-|=|+|.+..+-.+||++-
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 478999999999999999999999 7999999988877 799999999999999999753
No 126
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.62 E-value=0.12 Score=48.08 Aligned_cols=70 Identities=19% Similarity=0.159 Sum_probs=53.3
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCe-EEEEEEc
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGL-RLKLMWG 266 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~-~l~V~~a 266 (344)
..-+-|.++++.-. ..|..+|+++|+|++.....+..+-+|.|.++.+|.+|+.. ++.+|+|. -|-|+-.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk--ng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK--NGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh--cCeeeccceEEeeeec
Confidence 44555567776544 46778999999999988877778999999999999999975 44577774 4555543
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.33 E-value=0.0088 Score=62.70 Aligned_cols=75 Identities=27% Similarity=0.492 Sum_probs=63.2
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
...++|||+|||+..+++.+|+..|..+|.|.+|.|-.. ..||||.|.+...+-.|...+.+..+..| .+++.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g-~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG-THRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccC-cccccc
Confidence 345789999999999999999999999999999988664 56999999999999999999977755555 445555
Q ss_pred c
Q 048750 266 G 266 (344)
Q Consensus 266 a 266 (344)
+
T Consensus 448 G 448 (975)
T KOG0112|consen 448 G 448 (975)
T ss_pred c
Confidence 5
No 128
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.08 E-value=0.16 Score=47.24 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=48.3
Q ss_pred HHHHHHhhcCCCeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 209 QDLRDNFYAHGEIESIKMHPQ-------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 209 ~~L~~~F~~fG~I~~v~i~~~-------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
+++.+..++||.|..|.|... .---||+|...++|.+|+-.|+|+ +++|+.++..|..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGR-yFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGR-YFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCc-eecceeeeheecc
Confidence 456677789999999887664 335799999999999999999776 9999998887765
No 129
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.90 E-value=0.15 Score=52.41 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=58.0
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCe-eEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEI-ESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I-~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
.+.|-+.|+|++++-+||-++|+.|-.+ .+|.+..+ .|-+-|.|+++++|..|...++++ .|.++.|.+..
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~-~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQ-KIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccC-cccceeEEEEe
Confidence 3477889999999999999999999644 34444443 688999999999999999999776 88888887754
No 130
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.82 E-value=0.2 Score=44.11 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=48.6
Q ss_pred CHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhC-CCeEECCeEEEEEEcCCCC
Q 048750 207 TEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELS-NKLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 207 te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~-~~~~i~g~~l~V~~ak~~~ 270 (344)
..+.|+++|..|+.+..+..+.+-+-..|.|.+.++|..|...++ .+..+.|..++|.|+.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 347899999999999999999988889999999999999999986 1458999999999995543
No 131
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.39 E-value=0.49 Score=33.92 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=43.2
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcC---CCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHh
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAH---GEIESIKMHPQKAFAFVTYTTREGAEKAAEEL 250 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~f---G~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l 250 (344)
..+|+|.|++ +++.++|..+|..| .....|..+-+. -+-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-cEEEEECCHHHHHHHHHcC
Confidence 3589999985 47778999999998 235577777664 4678899999999998764
No 132
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.33 E-value=0.076 Score=48.42 Aligned_cols=57 Identities=23% Similarity=0.271 Sum_probs=51.1
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhC
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELS 251 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~ 251 (344)
..|||.||...++.+.|...|+.||+|....+..+ .+-++|.|...-.|.+|+....
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 78999999999999999999999999998766665 5678999999999999999874
No 133
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.63 E-value=0.63 Score=35.39 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=40.9
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHh
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEEL 250 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l 250 (344)
..-+||+ +|.++...||.++|+.||.|. |..+. -.-|||...+++.|..++..+
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~-dTSAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIN-DTSAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEEC-TTEEEEEECCCHHHHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEc-CCcEEEEeecHHHHHHHHHHh
Confidence 4455665 999999999999999999976 34433 468999999999999999887
No 134
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.38 E-value=0.069 Score=56.00 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=66.5
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCC
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKP 268 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~ 268 (344)
..++||.|.|+.-|.++|+.+++.+|.+.+++++.. +|.|||.|.+..+|.++...+.. ..++.+.+.|..+.|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~-~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDV-AGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchh-hhhhhcCccccccCC
Confidence 568999999999999999999999999999987775 78999999999999999877743 466677778888777
Q ss_pred CCCCC
Q 048750 269 QTQRP 273 (344)
Q Consensus 269 ~~~~~ 273 (344)
...+.
T Consensus 815 ~~~K~ 819 (881)
T KOG0128|consen 815 ERDKK 819 (881)
T ss_pred ccccc
Confidence 44443
No 135
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.80 E-value=0.01 Score=61.88 Aligned_cols=59 Identities=22% Similarity=0.427 Sum_probs=52.2
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHh
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEEL 250 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l 250 (344)
....++||.||+..+.+.+|...|+.+|.+..+++... +|.|||.|...+++.+|+...
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 55668899999999999999999999999888877632 899999999999999999855
No 136
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=91.28 E-value=0.1 Score=53.59 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=60.3
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeE-EEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIES-IKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~-v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
.....|||..||..+++.++-++|+..-.|++ |.|.+. ++.|||.|.+++++..|...- .++.++.+.|+|.-
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~-~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVK-TKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcc-cccccCceEEEeec
Confidence 34678999999999999999999998888877 555443 689999999999888887654 45677888999974
Q ss_pred c
Q 048750 266 G 266 (344)
Q Consensus 266 a 266 (344)
.
T Consensus 511 i 511 (944)
T KOG4307|consen 511 I 511 (944)
T ss_pred h
Confidence 3
No 137
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.10 E-value=0.08 Score=50.06 Aligned_cols=73 Identities=23% Similarity=0.441 Sum_probs=55.6
Q ss_pred cEEEeccCCCCCCHHH-H--HHHhhcCCCeeEEEEeCCC---------CEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 195 KTLYVGGVDARITEQD-L--RDNFYAHGEIESIKMHPQK---------AFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~-L--~~~F~~fG~I~~v~i~~~k---------g~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
.-+||-+|+..+..+. | .+.|.+||.|.+|.+..+. .-++|+|...++|..+|...+| ++++|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g-~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDG-FVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhh-HHhhhhhhH
Confidence 3456777776664443 3 3689999999999988742 2479999999999999999955 688888877
Q ss_pred EEEcCC
Q 048750 263 LMWGKP 268 (344)
Q Consensus 263 V~~ak~ 268 (344)
..++..
T Consensus 157 a~~gtt 162 (327)
T KOG2068|consen 157 ASLGTT 162 (327)
T ss_pred HhhCCC
Confidence 776653
No 138
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.81 E-value=0.57 Score=40.91 Aligned_cols=75 Identities=5% Similarity=0.113 Sum_probs=49.7
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhc-CCCe---eEEEEeCC--------CCEEEEEeCCHHHHHHHHHHhCCCeEECC--
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYA-HGEI---ESIKMHPQ--------KAFAFVTYTTREGAEKAAEELSNKLVIKG-- 258 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~-fG~I---~~v~i~~~--------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g-- 258 (344)
....|.|.+||+.+||+++.+.++. ++.- ..+.-... -.-|||.|.+.+++......++|...++.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3568999999999999999997776 6655 33331111 35799999999999999999977555554
Q ss_pred --eEEEEEEcC
Q 048750 259 --LRLKLMWGK 267 (344)
Q Consensus 259 --~~l~V~~ak 267 (344)
..-.|++|-
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 345677764
No 139
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=89.73 E-value=0.12 Score=49.34 Aligned_cols=25 Identities=36% Similarity=0.953 Sum_probs=22.6
Q ss_pred CccccccccCCcCCCCCCCCCCCCC
Q 048750 126 RAHVCSFYVRGECTRGAECPYRHEM 150 (344)
Q Consensus 126 ~~~~C~ff~~G~C~rG~~Cpy~H~~ 150 (344)
+..+|.||.+|.|+.|+.|.|+|+.
T Consensus 76 ~~~vcK~~l~glC~kgD~C~Flhe~ 100 (325)
T KOG1040|consen 76 GKVVCKHWLRGLCKKGDQCEFLHEY 100 (325)
T ss_pred CceeehhhhhhhhhccCcCcchhhh
Confidence 4579999999999999999999975
No 140
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=89.61 E-value=1.6 Score=42.18 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=44.0
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcC----CCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHH
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAH----GEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEE 249 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~f----G~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~ 249 (344)
..-.|...+||++.++.++.++|..- |..+.|-+++. .|=|||.|..+++|+.|+.+
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 34566678999999999999999632 34445544443 68999999999999999865
No 141
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.57 E-value=0.24 Score=52.10 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=64.0
Q ss_pred EEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCe-EECCeEEEEEEcCCCCC
Q 048750 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKL-VIKGLRLKLMWGKPQTQ 271 (344)
Q Consensus 196 tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~-~i~g~~l~V~~ak~~~~ 271 (344)
+.++.|..-..+-..|..+|+.||.|.+.+.+++-..|.|.|.+.+.|-.|.++++|+- ...|-+.+|.+++.-.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 34455666667788899999999999999999999999999999999999999998862 34677899999986543
No 142
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.96 E-value=2.3 Score=31.40 Aligned_cols=67 Identities=25% Similarity=0.433 Sum_probs=39.6
Q ss_pred EEEec-cCCCCCCHHHHHHHhhcCC-----CeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 196 TLYVG-GVDARITEQDLRDNFYAHG-----EIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 196 tLfVg-nL~~~~te~~L~~~F~~fG-----~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
+|||. +--..++..+|..++..-+ .|-.|.|. ..|+||+-... .|+.+++.|++ ..+.|++|+|+.|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~~~-~a~~v~~~l~~-~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVPEE-VAEKVLEALNG-KKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-TT--HHHHHHHHTT---SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEECHH-HHHHHHHHhcC-CCCCCeeEEEEEC
Confidence 56663 2346678888888887664 56677776 56999998754 78889999955 5999999999864
No 143
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=88.58 E-value=6.1 Score=40.14 Aligned_cols=70 Identities=10% Similarity=0.148 Sum_probs=54.4
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhc--CCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCC-eEECCeEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYA--HGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNK-LVIKGLRLK 262 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~--fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~-~~i~g~~l~ 262 (344)
...+.+.+.-|++.+.+|+++.+|.. +-.+.++.+-.+.+ -||+|++..+|+.|...|... ..|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 44566777899999999999999964 67888888877644 699999999999999888432 145566543
No 144
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=87.09 E-value=5.2 Score=32.11 Aligned_cols=62 Identities=15% Similarity=0.121 Sum_probs=44.6
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcC-CCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeEEC
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAH-GEIESIKMHPQ----KAFAFVTYTTREGAEKAAEELSNKLVIK 257 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~f-G~I~~v~i~~~----kg~aFV~F~~~~~A~~A~~~l~~~~~i~ 257 (344)
..+.+...+..++-++|..+.+.+ ..|..++|+++ +--+.+.|.+.++|......+||+ .++
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk-~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGK-PFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCC-ccC
Confidence 344444455555666776665555 46788899887 447889999999999999999775 544
No 145
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=86.90 E-value=0.2 Score=47.21 Aligned_cols=24 Identities=33% Similarity=0.899 Sum_probs=21.1
Q ss_pred ccccccccCCcCCCCCC-CCCCCCC
Q 048750 127 AHVCSFYVRGECTRGAE-CPYRHEM 150 (344)
Q Consensus 127 ~~~C~ff~~G~C~rG~~-Cpy~H~~ 150 (344)
=.+|+.|.||-|.||+. |.|.|--
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP~ 61 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHPP 61 (331)
T ss_pred HHHHHHHHhccccCCCccccccCCC
Confidence 46899999999999998 9999943
No 146
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=86.61 E-value=0.12 Score=37.54 Aligned_cols=36 Identities=31% Similarity=0.698 Sum_probs=16.4
Q ss_pred cccccccccCCCCceeeeecCCCCCCccceeeehhccc
Q 048750 5 ADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSK 42 (344)
Q Consensus 5 ~~~g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~ 42 (344)
+.....|.+|.++|++|+.+- .=|.=-.++|..|+.
T Consensus 6 d~~~~~C~~C~~~F~~~~rrh--hCr~CG~~vC~~Cs~ 41 (69)
T PF01363_consen 6 DSEASNCMICGKKFSLFRRRH--HCRNCGRVVCSSCSS 41 (69)
T ss_dssp GGG-SB-TTT--B-BSSS-EE--E-TTT--EEECCCS-
T ss_pred CCCCCcCcCcCCcCCCceeeE--ccCCCCCEECCchhC
Confidence 456789999999999876543 222223355555554
No 147
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.36 E-value=0.45 Score=31.11 Aligned_cols=12 Identities=58% Similarity=1.309 Sum_probs=10.8
Q ss_pred ccccccCCCCce
Q 048750 8 DKECKICTRPFT 19 (344)
Q Consensus 8 g~eckic~rpft 19 (344)
-+.|.+|.||||
T Consensus 8 ~K~C~~C~rpf~ 19 (42)
T PF10013_consen 8 SKICPVCGRPFT 19 (42)
T ss_pred CCcCcccCCcch
Confidence 478999999998
No 148
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=83.65 E-value=0.6 Score=44.65 Aligned_cols=28 Identities=43% Similarity=1.069 Sum_probs=24.3
Q ss_pred CCccccccc-cCCcCCCCCCCCCCCCCCC
Q 048750 125 NRAHVCSFY-VRGECTRGAECPYRHEMPV 152 (344)
Q Consensus 125 ~~~~~C~ff-~~G~C~rG~~Cpy~H~~p~ 152 (344)
.+.+.|.|| ..|.|.+|.+|+|.|.-|.
T Consensus 103 ~k~rec~ff~~~g~c~~~~~c~y~h~dpq 131 (325)
T KOG1040|consen 103 TKMRECKFFSLFGECTNGKDCPYLHGDPQ 131 (325)
T ss_pred cccccccccccccccccccCCcccCCChh
Confidence 566789888 8899999999999999873
No 149
>PF09963 DUF2197: Uncharacterized protein conserved in bacteria (DUF2197); InterPro: IPR019241 This family represents various hypothetical bacterial proteins with no known function.
Probab=83.18 E-value=0.34 Score=33.87 Aligned_cols=32 Identities=22% Similarity=0.499 Sum_probs=28.4
Q ss_pred ccccCCCCceeeeecCCC---CCCccceeeehhcc
Q 048750 10 ECKICTRPFTVFRWRPGR---DARFKKTEICQTCS 41 (344)
Q Consensus 10 eckic~rpft~f~w~~~~---~~~~~~t~ic~~ca 41 (344)
.|=||.+.+++-.|.+.. ++|-.+|.+|..|.
T Consensus 4 kC~lCdk~~~Id~~~~~aKrLrnrPi~tYmC~eC~ 38 (56)
T PF09963_consen 4 KCILCDKKEEIDEDTPEAKRLRNRPIHTYMCDECK 38 (56)
T ss_pred EEEecCCEEEeccCCHHHHHhhcCCCcceeChhHH
Confidence 589999999999999833 78999999999995
No 150
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=82.45 E-value=0.84 Score=25.93 Aligned_cols=20 Identities=25% Similarity=0.946 Sum_probs=16.6
Q ss_pred ccccccCC-cCCCCCCCCCCCC
Q 048750 129 VCSFYVRG-ECTRGAECPYRHE 149 (344)
Q Consensus 129 ~C~ff~~G-~C~rG~~Cpy~H~ 149 (344)
+|.|...| .|+. ++|.|.|-
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QHf 22 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQHF 22 (23)
T ss_pred CCccccCCCeeCC-CCCCcccc
Confidence 69999888 8976 67999984
No 151
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.95 E-value=5.2 Score=39.59 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=55.7
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcC-CCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeEEC
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAH-GEIESIKMHPQ----KAFAFVTYTTREGAEKAAEELSNKLVIK 257 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~f-G~I~~v~i~~~----kg~aFV~F~~~~~A~~A~~~l~~~~~i~ 257 (344)
+.+.+.|+|-.+|..++-.||-.+...| -.|.+++|+++ +-...|.|.+.++|....+.++|+ .++
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk-~Fn 141 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGK-QFN 141 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCC-cCC
Confidence 3448899999999999999999888766 57899999986 446789999999999999999775 443
No 153
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=77.95 E-value=1.2 Score=30.88 Aligned_cols=17 Identities=41% Similarity=0.831 Sum_probs=14.3
Q ss_pred cccccCCCCceeeeecC
Q 048750 9 KECKICTRPFTVFRWRP 25 (344)
Q Consensus 9 ~eckic~rpft~f~w~~ 25 (344)
..|.+|.+.|++|.++.
T Consensus 3 ~~C~~C~~~F~~~~rk~ 19 (57)
T cd00065 3 SSCMGCGKPFTLTRRRH 19 (57)
T ss_pred CcCcccCccccCCcccc
Confidence 57999999999987663
No 154
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=77.15 E-value=3.9 Score=41.33 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=38.9
Q ss_pred CCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeE--EC-CeEEEEEEcCCCCC
Q 048750 218 HGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLV--IK-GLRLKLMWGKPQTQ 271 (344)
Q Consensus 218 fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~--i~-g~~l~V~~ak~~~~ 271 (344)
.|.-..+.+.-+ .|||||.|.+.+++..+.++.+|+.+ ++ .+...+.||+-+..
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk 475 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGK 475 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhch
Confidence 355445544443 69999999999999999999988643 23 35668888876543
No 155
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=77.03 E-value=1.5 Score=44.26 Aligned_cols=22 Identities=36% Similarity=0.976 Sum_probs=20.6
Q ss_pred cccccccCCcCCCCCCCCCCCC
Q 048750 128 HVCSFYVRGECTRGAECPYRHE 149 (344)
Q Consensus 128 ~~C~ff~~G~C~rG~~Cpy~H~ 149 (344)
..|.-|.+|.|.+|+.|.|-|.
T Consensus 237 tpCPefrkG~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 237 TPCPEFRKGSCERGDSCEYAHG 258 (528)
T ss_pred ccCcccccCCCCCCCccccccc
Confidence 6899999999999999999994
No 156
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=75.43 E-value=0.97 Score=42.12 Aligned_cols=26 Identities=35% Similarity=1.127 Sum_probs=23.7
Q ss_pred CccccccccCCcCCCCCCCCCCCCCC
Q 048750 126 RAHVCSFYVRGECTRGAECPYRHEMP 151 (344)
Q Consensus 126 ~~~~C~ff~~G~C~rG~~Cpy~H~~p 151 (344)
...+|.||.-|.|..|+.|.|.|.+.
T Consensus 91 KSvvCafFk~g~C~KG~kCKFsHdl~ 116 (343)
T KOG1763|consen 91 KSVVCAFFKQGTCTKGDKCKFSHDLA 116 (343)
T ss_pred hHHHHHHHhccCCCCCCcccccchHH
Confidence 56899999999999999999999764
No 157
>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.
Probab=74.54 E-value=3.1 Score=28.05 Aligned_cols=41 Identities=22% Similarity=0.559 Sum_probs=31.1
Q ss_pred cccccccccccCC--CCceeeeecCCC-CCCccceeeehhcccc
Q 048750 3 TKADYDKECKICT--RPFTVFRWRPGR-DARFKKTEICQTCSKL 43 (344)
Q Consensus 3 ~k~~~g~eckic~--rpft~f~w~~~~-~~~~~~t~ic~~ca~~ 43 (344)
++++.|..|-.|+ -+++||.--|.. ..-=.--.||.||..+
T Consensus 2 L~~Rs~~kCELC~a~~~L~vy~Vpp~~~~~~d~~iliC~tC~~Q 45 (47)
T smart00782 2 LLARCESKCELCGSDSPLVVYAVPPSSDVTADNSVMLCDTCHSQ 45 (47)
T ss_pred hhHHcCCcccCcCCCCCceEEecCCCCCCCccceeeechHHHHh
Confidence 4667888899998 789999987744 3334456899999864
No 158
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=74.49 E-value=1.4 Score=42.95 Aligned_cols=23 Identities=30% Similarity=1.025 Sum_probs=21.3
Q ss_pred cccccccCCcCCCCCCCCCCCCC
Q 048750 128 HVCSFYVRGECTRGAECPYRHEM 150 (344)
Q Consensus 128 ~~C~ff~~G~C~rG~~Cpy~H~~ 150 (344)
..|.||..|.|+-++.|.|.|-.
T Consensus 141 kpC~ffLeg~CRF~enCRfSHG~ 163 (486)
T KOG2185|consen 141 KPCKFFLEGRCRFGENCRFSHGL 163 (486)
T ss_pred ccchHhhccccccCcccccccCc
Confidence 58999999999999999999954
No 159
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=74.42 E-value=1.8 Score=44.67 Aligned_cols=69 Identities=20% Similarity=0.281 Sum_probs=58.7
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
..-++||||+...++++-++.+....|-|.+...+. |||..|.......+|+..+ ....++|..+.+.-
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~-t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLL-TELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHh-cccCCCcchhhccc
Confidence 366899999999999999999999999998876654 9999999999999999888 44578887766554
No 160
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=74.32 E-value=2.1 Score=41.02 Aligned_cols=27 Identities=26% Similarity=0.796 Sum_probs=23.4
Q ss_pred CccccccccC-CcCCCCCCCCCCCCCCC
Q 048750 126 RAHVCSFYVR-GECTRGAECPYRHEMPV 152 (344)
Q Consensus 126 ~~~~C~ff~~-G~C~rG~~Cpy~H~~p~ 152 (344)
+..+|..|.+ |.|..|..|.|.|..+.
T Consensus 176 kt~lC~~f~~tG~C~yG~rC~F~H~~~~ 203 (332)
T KOG1677|consen 176 KTKLCPKFQKTGLCKYGSRCRFIHGEPE 203 (332)
T ss_pred CCcCCCccccCCCCCCCCcCeecCCCcc
Confidence 4579999965 99999999999998763
No 161
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.01 E-value=1.3 Score=42.72 Aligned_cols=25 Identities=32% Similarity=0.959 Sum_probs=23.7
Q ss_pred cccccccCCcCCCCCCCCCCCCCCC
Q 048750 128 HVCSFYVRGECTRGAECPYRHEMPV 152 (344)
Q Consensus 128 ~~C~ff~~G~C~rG~~Cpy~H~~p~ 152 (344)
.||.||.+|.|..|+.|.|.|..|.
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhcccccccccceeeeeccCch
Confidence 7999999999999999999999984
No 162
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=70.42 E-value=2.1 Score=39.23 Aligned_cols=26 Identities=31% Similarity=0.825 Sum_probs=23.2
Q ss_pred ccccccccCCcCCCCCCCCCCCCCCC
Q 048750 127 AHVCSFYVRGECTRGAECPYRHEMPV 152 (344)
Q Consensus 127 ~~~C~ff~~G~C~rG~~Cpy~H~~p~ 152 (344)
-.+|.+|.++.|.+|..|-|.|....
T Consensus 152 ea~C~~~e~~~C~rG~~CnFmH~k~~ 177 (260)
T KOG2202|consen 152 EAICGQFERTECSRGGACNFMHVKRL 177 (260)
T ss_pred hhhhcccccccCCCCCcCcchhhhhh
Confidence 47999999999999999999997643
No 163
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=70.26 E-value=1.9 Score=38.01 Aligned_cols=25 Identities=32% Similarity=0.761 Sum_probs=22.8
Q ss_pred ccccccc-cCCcCCCCCCCCCCCCCC
Q 048750 127 AHVCSFY-VRGECTRGAECPYRHEMP 151 (344)
Q Consensus 127 ~~~C~ff-~~G~C~rG~~Cpy~H~~p 151 (344)
+-+|-.| ..|+|-.|++|.|+|...
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~ 166 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRS 166 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhh
Confidence 6799999 899999999999999764
No 164
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=69.13 E-value=16 Score=34.14 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=40.9
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCC-eeEEEEeCCCCEEEEEeCCHHHH
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGE-IESIKMHPQKAFAFVTYTTREGA 243 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~-I~~v~i~~~kg~aFV~F~~~~~A 243 (344)
.+.|||+||+.++.-.||+..+.+.|. -.++...-..+-+|+.|.++..+
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRKGV 380 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCccCC
Confidence 456999999999999999999988874 45666666788999999886543
No 165
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.18 E-value=1.8 Score=29.11 Aligned_cols=12 Identities=58% Similarity=1.428 Sum_probs=10.6
Q ss_pred ccccccCCCCce
Q 048750 8 DKECKICTRPFT 19 (344)
Q Consensus 8 g~eckic~rpft 19 (344)
.+.|.+|.|||+
T Consensus 12 ~KICpvCqRPFs 23 (54)
T COG4338 12 DKICPVCQRPFS 23 (54)
T ss_pred hhhhhhhcCchH
Confidence 578999999997
No 166
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=61.28 E-value=6.1 Score=37.22 Aligned_cols=75 Identities=19% Similarity=0.128 Sum_probs=57.6
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHP------QKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~------~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
...+++|++++...+.+.+...++.+.|.+....+.. .+++++|.|...+.+..++... ....+.++.+....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s-~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEES-GSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhh-hccccccccccCcc
Confidence 4688999999999998888889999999777665544 2899999999999999999865 43355555544444
Q ss_pred cC
Q 048750 266 GK 267 (344)
Q Consensus 266 ak 267 (344)
..
T Consensus 165 ~~ 166 (285)
T KOG4210|consen 165 NT 166 (285)
T ss_pred cc
Confidence 33
No 167
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=60.75 E-value=17 Score=34.22 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=56.4
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCC-------------CEEEEEeCCHHHHHHHHHHhCC-----CeE
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQK-------------AFAFVTYTTREGAEKAAEELSN-----KLV 255 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~k-------------g~aFV~F~~~~~A~~A~~~l~~-----~~~ 255 (344)
.++|.+.|+..+++-..+-..|.+||.|++|.++.+. ....+.|-+++.+-.....+-. +..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5678889999999988899999999999999999865 6778999999887665443311 123
Q ss_pred ECCeEEEEEEcC
Q 048750 256 IKGLRLKLMWGK 267 (344)
Q Consensus 256 i~g~~l~V~~ak 267 (344)
++...|.|.|..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 566677777654
No 168
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=60.42 E-value=58 Score=23.58 Aligned_cols=54 Identities=9% Similarity=0.180 Sum_probs=39.4
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 205 RITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 205 ~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
.++-++++..+.+|+-. + |..++.-=||.|.+..+|++.....++. .+.+..|.
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~--I~~d~tGfYIvF~~~~Ea~rC~~~~~~~-~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-R--IRDDRTGFYIVFNDSKEAERCFRAEDGT-LFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCcc-e--EEecCCEEEEEECChHHHHHHHHhcCCC-EEEEEEEE
Confidence 45678999999999742 2 3344445589999999999999988665 55555444
No 169
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=60.03 E-value=3.2 Score=33.68 Aligned_cols=35 Identities=29% Similarity=0.707 Sum_probs=18.5
Q ss_pred cccccccCCCCceeeeecCCCCCCccceeeehhccc
Q 048750 7 YDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSK 42 (344)
Q Consensus 7 ~g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~ 42 (344)
....|-+|.+||+ |-+..|..-..=+..||..|.-
T Consensus 53 ~~~~C~~C~~~fg-~l~~~~~~C~~C~~~VC~~C~~ 87 (118)
T PF02318_consen 53 GERHCARCGKPFG-FLFNRGRVCVDCKHRVCKKCGV 87 (118)
T ss_dssp CCSB-TTTS-BCS-CTSTTCEEETTTTEEEETTSEE
T ss_pred CCcchhhhCCccc-ccCCCCCcCCcCCccccCccCC
Confidence 4568999999998 4455553323333444444433
No 170
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.23 E-value=43 Score=34.40 Aligned_cols=75 Identities=28% Similarity=0.325 Sum_probs=59.1
Q ss_pred CCCCccEEEeccCCCC-CCHHHHHHHhhcC----CCeeEEEEeCC-----------------------------------
Q 048750 190 EDESIKTLYVGGVDAR-ITEQDLRDNFYAH----GEIESIKMHPQ----------------------------------- 229 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~-~te~~L~~~F~~f----G~I~~v~i~~~----------------------------------- 229 (344)
-....++|-|-|+.++ +.-.+|.-+|+.| |.|.+|.|...
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 3456789999999865 6889999999887 79999998652
Q ss_pred ------------------CCEEEEEeCCHHHHHHHHHHhCCCeEECC--eEEEEEE
Q 048750 230 ------------------KAFAFVTYTTREGAEKAAEELSNKLVIKG--LRLKLMW 265 (344)
Q Consensus 230 ------------------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g--~~l~V~~ 265 (344)
--||.|+|.+.+.|....+...| +.+.. ..|.++|
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG-~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDG-IEFESSANKLDLRF 304 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCc-ceeccccceeeeee
Confidence 13899999999999999999855 56654 4555555
No 171
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=57.90 E-value=4.7 Score=36.15 Aligned_cols=25 Identities=40% Similarity=0.941 Sum_probs=22.7
Q ss_pred Cccccccc-cCCcCCCCCCCCCCCCC
Q 048750 126 RAHVCSFY-VRGECTRGAECPYRHEM 150 (344)
Q Consensus 126 ~~~~C~ff-~~G~C~rG~~Cpy~H~~ 150 (344)
.+..|++| +.|.|-.|+.|.|.|+-
T Consensus 205 savycryynangicgkgaacrfvhep 230 (377)
T KOG1492|consen 205 SAVYCRYYNANGICGKGAACRFVHEP 230 (377)
T ss_pred ceeEEEEecCCCcccCCceeeeeccc
Confidence 56889999 99999999999999974
No 172
>PHA00732 hypothetical protein
Probab=56.15 E-value=9.5 Score=28.68 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=16.0
Q ss_pred cccccCCCCCcHHHHHhhh
Q 048750 49 VCLLDLEYGLPVQVRDTAL 67 (344)
Q Consensus 49 ~c~~dl~~~~p~~~rd~~l 67 (344)
.|.|.-+|.||..||-++-
T Consensus 55 ~~~~~~~~~~~~~~~~~~~ 73 (79)
T PHA00732 55 YCYLFSTYKLPYHVRLAIK 73 (79)
T ss_pred EeEeeecCcchHHHHHHHH
Confidence 6788889999999997763
No 173
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=55.33 E-value=7.7 Score=36.44 Aligned_cols=28 Identities=36% Similarity=0.922 Sum_probs=24.9
Q ss_pred CCccccccccCCcCCCCCCCCCCCCCCC
Q 048750 125 NRAHVCSFYVRGECTRGAECPYRHEMPV 152 (344)
Q Consensus 125 ~~~~~C~ff~~G~C~rG~~Cpy~H~~p~ 152 (344)
.+..+|.||.+|.|..|..|.|+|+...
T Consensus 102 ~s~V~c~~~~~g~c~s~~~c~~lh~~d~ 129 (285)
T COG5084 102 SSSVVCKFFLRGLCKSGFSCEFLHEYDL 129 (285)
T ss_pred cCCcccchhccccCcCCCccccccCCCc
Confidence 4568999999999999999999998763
No 174
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=52.53 E-value=8.3 Score=36.24 Aligned_cols=27 Identities=30% Similarity=0.819 Sum_probs=24.3
Q ss_pred ccccccc-cCCcCCCCCCCCCCCCCCCC
Q 048750 127 AHVCSFY-VRGECTRGAECPYRHEMPVT 153 (344)
Q Consensus 127 ~~~C~ff-~~G~C~rG~~Cpy~H~~p~~ 153 (344)
..-|.+| ..|.|..|..|+|.|..|..
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp~~ 161 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHIDPDS 161 (285)
T ss_pred CCCcccccccceeccCCCCCccccCccc
Confidence 5679999 99999999999999998754
No 175
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=52.40 E-value=24 Score=25.26 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=16.4
Q ss_pred HHHHHHhhcCCCeeEEEEeC
Q 048750 209 QDLRDNFYAHGEIESIKMHP 228 (344)
Q Consensus 209 ~~L~~~F~~fG~I~~v~i~~ 228 (344)
.+||++|+..|+|.-+-+..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57999999999998776543
No 176
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=51.75 E-value=11 Score=35.77 Aligned_cols=42 Identities=24% Similarity=0.615 Sum_probs=31.7
Q ss_pred cccccCCCCceeeeecCCCCCCccceeeehhcc-ccccccccccccCC
Q 048750 9 KECKICTRPFTVFRWRPGRDARFKKTEICQTCS-KLKNVCQVCLLDLE 55 (344)
Q Consensus 9 ~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca-~~kn~cq~c~~dl~ 55 (344)
-||-||.-+.+.==+ .+-.=+.+|-+|. ++.|.|++|-+-+.
T Consensus 49 leCPvC~~~l~~Pi~-----QC~nGHlaCssC~~~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 49 LDCPVCFNPLSPPIF-----QCDNGHLACSSCRTKVSNKCPTCRLPIG 91 (299)
T ss_pred ccCchhhccCcccce-----ecCCCcEehhhhhhhhcccCCccccccc
Confidence 589999888764333 3344478999988 99999999976654
No 177
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=51.44 E-value=16 Score=31.93 Aligned_cols=77 Identities=14% Similarity=0.205 Sum_probs=55.8
Q ss_pred CccEEEeccCCCCCC-H----HHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCe-EEEEEEc
Q 048750 193 SIKTLYVGGVDARIT-E----QDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGL-RLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~t-e----~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~-~l~V~~a 266 (344)
-.+++++.+|+..+. + .....+|..|-+..-..+++..+..-|.|.+.+.|..|...++.. .+.|+ .++.-++
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~-~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHST-SFNGKNELKLYFA 87 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhc-ccCCCceEEEEEc
Confidence 345677888876542 2 234566667777666677766777788999999999999988665 77776 8888887
Q ss_pred CCCC
Q 048750 267 KPQT 270 (344)
Q Consensus 267 k~~~ 270 (344)
.+.-
T Consensus 88 Q~~~ 91 (193)
T KOG4019|consen 88 QPGH 91 (193)
T ss_pred cCCC
Confidence 7643
No 178
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=50.14 E-value=7 Score=30.18 Aligned_cols=38 Identities=34% Similarity=0.825 Sum_probs=26.2
Q ss_pred ccccccCCCCceeeeecCCCCCCccceeeehhccccccccccc---cccCCC
Q 048750 8 DKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVC---LLDLEY 56 (344)
Q Consensus 8 g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~~kn~cq~c---~~dl~~ 56 (344)
...|+||-.--. ..----||+||=.|++|--| |+|...
T Consensus 44 ~~~C~~CK~~v~-----------q~g~~YCq~CAYkkGiCamCGKki~dtk~ 84 (90)
T PF10235_consen 44 SSKCKICKTKVH-----------QPGAKYCQTCAYKKGICAMCGKKILDTKN 84 (90)
T ss_pred Cccccccccccc-----------cCCCccChhhhcccCcccccCCeeccccc
Confidence 458999864211 11123699999999999999 777653
No 179
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=49.77 E-value=7.8 Score=36.85 Aligned_cols=26 Identities=31% Similarity=0.662 Sum_probs=21.4
Q ss_pred CCccccccccCCcCCCCCCCCCCCCCC
Q 048750 125 NRAHVCSFYVRGECTRGAECPYRHEMP 151 (344)
Q Consensus 125 ~~~~~C~ff~~G~C~rG~~Cpy~H~~p 151 (344)
++=..|.+|.+|.|.| +.|.|.|--+
T Consensus 69 g~v~aC~Ds~kgrCsR-~nCkylHpp~ 94 (331)
T KOG2494|consen 69 GRVIACFDSQKGRCSR-ENCKYLHPPQ 94 (331)
T ss_pred CeEEEEeccccCccCc-ccceecCCCh
Confidence 4457899999999999 5599999654
No 180
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=49.22 E-value=84 Score=21.52 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=43.8
Q ss_pred EEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCH----HHHHHHHHHh
Q 048750 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTR----EGAEKAAEEL 250 (344)
Q Consensus 196 tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~----~~A~~A~~~l 250 (344)
||.|.|+.-.--...|.+.+.+.-.|.++.+....+-+-|.|... +...++++.+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHh
Confidence 567778877777788999999999999999999999999999854 4555555543
No 181
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.58 E-value=33 Score=33.62 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=44.1
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCC-eeEEEEeCCCCEEEEEeCCHHHHHHHHHH
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGE-IESIKMHPQKAFAFVTYTTREGAEKAAEE 249 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~-I~~v~i~~~kg~aFV~F~~~~~A~~A~~~ 249 (344)
-..|-|.++|...-.+||...|+.|+. --+|.++. ...||-.|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD-dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD-DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEee-cceeEEeecchHHHHHHhhc
Confidence 467888999999988999999999974 34455544 57899999999999988753
No 182
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=45.37 E-value=15 Score=24.08 Aligned_cols=37 Identities=24% Similarity=0.716 Sum_probs=25.1
Q ss_pred cccccccCCCCceeeeecCCCCCCccceeeehhccccccccccccccCCC
Q 048750 7 YDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEY 56 (344)
Q Consensus 7 ~g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~~kn~cq~c~~dl~~ 56 (344)
.+..|.+|.++++=.||+ |..|.. -.+|+.|..+-.+
T Consensus 3 ~~~~C~~C~~~i~g~ry~------------C~~C~d-~dlC~~Cf~~~~~ 39 (44)
T smart00291 3 HSYSCDTCGKPIVGVRYH------------CLVCPD-YDLCQSCFAKGSA 39 (44)
T ss_pred CCcCCCCCCCCCcCCEEE------------CCCCCC-ccchHHHHhCcCc
Confidence 466899999988655553 555643 6778888765433
No 183
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=44.16 E-value=10 Score=21.84 Aligned_cols=14 Identities=43% Similarity=0.788 Sum_probs=10.8
Q ss_pred cccccCCCCceeee
Q 048750 9 KECKICTRPFTVFR 22 (344)
Q Consensus 9 ~eckic~rpft~f~ 22 (344)
.+|.+|+|-|..-+
T Consensus 3 ~~C~~CgR~F~~~~ 16 (25)
T PF13913_consen 3 VPCPICGRKFNPDR 16 (25)
T ss_pred CcCCCCCCEECHHH
Confidence 47999999996543
No 184
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=43.58 E-value=23 Score=21.00 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=17.8
Q ss_pred ccccccCCCCceeeeecCCCCCCccceeeehhccc
Q 048750 8 DKECKICTRPFTVFRWRPGRDARFKKTEICQTCSK 42 (344)
Q Consensus 8 g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~ 42 (344)
|+.|..|..+++-..- .-+.|.+|.+|.+
T Consensus 1 G~~C~rC~~~~~~~~~------~~r~~~~C~rCq~ 29 (30)
T PF06827_consen 1 GEKCPRCWNYIEDIGI------NGRSTYLCPRCQK 29 (30)
T ss_dssp TSB-TTT--BBEEEEE------TTEEEEE-TTTCC
T ss_pred CCcCccCCCcceEeEe------cCCCCeECcCCcC
Confidence 6778888777655443 2467999999976
No 185
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=43.37 E-value=68 Score=24.41 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=41.9
Q ss_pred EEEeccCCCCCCHHHHHHHhhc-CC-CeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHh
Q 048750 196 TLYVGGVDARITEQDLRDNFYA-HG-EIESIKMHPQ---KAFAFVTYTTREGAEKAAEEL 250 (344)
Q Consensus 196 tLfVgnL~~~~te~~L~~~F~~-fG-~I~~v~i~~~---kg~aFV~F~~~~~A~~A~~~l 250 (344)
.-|+-.++...+..+|++.+++ || .|.+|+.+.. ..=|||++.....|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 3455567888999999999987 56 5777765443 357999999999999887766
No 186
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=42.05 E-value=19 Score=32.75 Aligned_cols=25 Identities=24% Similarity=0.874 Sum_probs=22.8
Q ss_pred CccccccccCCcCCCCCCCCCCCCC
Q 048750 126 RAHVCSFYVRGECTRGAECPYRHEM 150 (344)
Q Consensus 126 ~~~~C~ff~~G~C~rG~~Cpy~H~~ 150 (344)
...+|-.|.-+.|..|+.|.|.|..
T Consensus 84 K~~vcalF~~~~c~kg~~ckF~h~~ 108 (299)
T COG5252 84 KTVVCALFLNKTCAKGDACKFAHGK 108 (299)
T ss_pred hhHHHHHhccCccccCchhhhhcch
Confidence 4589999999999999999999974
No 187
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=41.80 E-value=48 Score=35.24 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=7.6
Q ss_pred CCCcHHHHHhhhcc
Q 048750 56 YGLPVQVRDTALSI 69 (344)
Q Consensus 56 ~~~p~~~rd~~l~~ 69 (344)
||-+..+++++-.+
T Consensus 11 ~~~v~s~p~A~~~i 24 (830)
T KOG1923|consen 11 FGQVGSVPPAIACI 24 (830)
T ss_pred cCCCCCCchHHHHh
Confidence 45555566665444
No 188
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=41.27 E-value=23 Score=24.15 Aligned_cols=34 Identities=18% Similarity=0.412 Sum_probs=26.4
Q ss_pred ccccCCCCceeeeecCCCCCCccceeeehhccccccccc
Q 048750 10 ECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQ 48 (344)
Q Consensus 10 eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~~kn~cq 48 (344)
-|..|++++++..|+ +. +.-..|.++.+.++-|.
T Consensus 7 ~C~~CG~~m~~~~~~-~~----~~yy~C~~~~~~~~~C~ 40 (58)
T PF13408_consen 7 RCGHCGSKMTRRKRK-GK----YRYYRCSNRRRKGKGCP 40 (58)
T ss_pred EcccCCcEeEEEECC-CC----ceEEEcCCCcCCCCCCC
Confidence 499999999998887 22 15689999998886343
No 189
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=40.46 E-value=6.8 Score=21.44 Aligned_cols=10 Identities=40% Similarity=1.268 Sum_probs=7.6
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
+|.+|++.|+
T Consensus 2 ~C~~C~~~f~ 11 (23)
T PF00096_consen 2 KCPICGKSFS 11 (23)
T ss_dssp EETTTTEEES
T ss_pred CCCCCCCccC
Confidence 4888888775
No 190
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.31 E-value=11 Score=35.41 Aligned_cols=26 Identities=27% Similarity=0.747 Sum_probs=23.0
Q ss_pred Cccccccc-cCCcCCCCCCCCCCCCCC
Q 048750 126 RAHVCSFY-VRGECTRGAECPYRHEMP 151 (344)
Q Consensus 126 ~~~~C~ff-~~G~C~rG~~Cpy~H~~p 151 (344)
.+-+|-.| ..|+|..|++|.|+|..-
T Consensus 185 qpDicKdykeTgycg~gdSckFlh~r~ 211 (313)
T KOG1813|consen 185 QPDICKDYKETGYCGYGDSCKFLHDRS 211 (313)
T ss_pred CchhhhhhHhhCcccccchhhhhhhhh
Confidence 36799999 899999999999999753
No 191
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=37.84 E-value=71 Score=32.35 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=30.6
Q ss_pred cccccccccCCC-CceeeeecCCCCCCccceeeehhccccccccccc----cccCCCCC
Q 048750 5 ADYDKECKICTR-PFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVC----LLDLEYGL 58 (344)
Q Consensus 5 ~~~g~eckic~r-pft~f~w~~~~~~~~~~t~ic~~ca~~kn~cq~c----~~dl~~~~ 58 (344)
.-.|++|||=+- ---+|.=.++. ..++||..|---+.+|-.-|-| |+||.=|-
T Consensus 31 ~~lgk~~~~l~aAVVqLY~a~p~~-~~W~~~~~~Gal~lVkD~~~rsyFlrl~di~~~r 88 (569)
T KOG3671|consen 31 KLLGKKCKTLAAAVVQLYKAYPDP-NHWNKTGLCGALCLVKDNAQRSYFLRLVDIVNNR 88 (569)
T ss_pred HHhccchhhHHHHHHHHHhhcCCh-hhhccccCceeEEEeeccccceeeeEEeeecCce
Confidence 346788886442 11122222222 5788898888766677666666 44665544
No 192
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=37.35 E-value=9.7 Score=26.16 Aligned_cols=10 Identities=40% Similarity=1.178 Sum_probs=4.7
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
-|-+|.|||+
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 7888888876
No 193
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=36.31 E-value=45 Score=29.03 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=13.5
Q ss_pred CCchhHHHHhhhcCccc
Q 048750 106 ARPSDTILKLQRTQPYY 122 (344)
Q Consensus 106 ~~~~~~l~~lar~~py~ 122 (344)
....+++.+|+|.+.|.
T Consensus 138 Es~eeI~aRL~R~a~~~ 154 (192)
T COG3709 138 ESREEILARLARAARYT 154 (192)
T ss_pred CCHHHHHHHHHhhcccc
Confidence 44678999999988864
No 194
>PF13790 DUF4182: Domain of unknown function (DUF4182)
Probab=36.22 E-value=15 Score=23.51 Aligned_cols=8 Identities=50% Similarity=1.215 Sum_probs=4.3
Q ss_pred eeeehhcc
Q 048750 34 TEICQTCS 41 (344)
Q Consensus 34 t~ic~~ca 41 (344)
|+|||+|-
T Consensus 3 tIvCq~C~ 10 (38)
T PF13790_consen 3 TIVCQHCN 10 (38)
T ss_pred EEEecccc
Confidence 45555553
No 195
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=36.12 E-value=1.6e+02 Score=21.26 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=33.8
Q ss_pred HHHHHHhhcCCCeeEEEEeCC--CCEEEEEeCCHHHHHHHHHHh
Q 048750 209 QDLRDNFYAHGEIESIKMHPQ--KAFAFVTYTTREGAEKAAEEL 250 (344)
Q Consensus 209 ~~L~~~F~~fG~I~~v~i~~~--kg~aFV~F~~~~~A~~A~~~l 250 (344)
.++.+.+.++| +....+.-. .++.|+-+.+.+.++++++.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 45777778899 677777777 789999999999999998877
No 196
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=35.75 E-value=19 Score=32.33 Aligned_cols=26 Identities=27% Similarity=0.896 Sum_probs=23.4
Q ss_pred CccccccccCCcCCCCCCCCCCCCCC
Q 048750 126 RAHVCSFYVRGECTRGAECPYRHEMP 151 (344)
Q Consensus 126 ~~~~C~ff~~G~C~rG~~Cpy~H~~p 151 (344)
|..+|.-|..|.|...+.|...|++.
T Consensus 232 rkticpkflngrcnkaedcnlsheld 257 (377)
T KOG1492|consen 232 RKTICPKFLNGRCNKAEDCNLSHELD 257 (377)
T ss_pred ccccChHHhcCccCchhcCCcccccC
Confidence 45799999999999999999999874
No 197
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=35.68 E-value=15 Score=26.72 Aligned_cols=18 Identities=44% Similarity=1.091 Sum_probs=14.7
Q ss_pred eeeehhccccccccccccccCCC
Q 048750 34 TEICQTCSKLKNVCQVCLLDLEY 56 (344)
Q Consensus 34 t~ic~~ca~~kn~cq~c~~dl~~ 56 (344)
|.+|.||. ||+||+|-..
T Consensus 3 ~~vCPtC~-----~~~~~~d~~~ 20 (69)
T PF13746_consen 3 TYVCPTCR-----CQSCMFDDDT 20 (69)
T ss_pred eEECCCCe-----EEEEEEcCCC
Confidence 67899999 9988887653
No 198
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=34.95 E-value=23 Score=23.52 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=13.3
Q ss_pred cccccccCCC-Cceeeeec
Q 048750 7 YDKECKICTR-PFTVFRWR 24 (344)
Q Consensus 7 ~g~eckic~r-pft~f~w~ 24 (344)
.+-.|..|.. |++-+||+
T Consensus 3 ~~~~C~~C~~~~i~g~Ry~ 21 (46)
T PF00569_consen 3 HGYTCDGCGTDPIIGVRYH 21 (46)
T ss_dssp SSCE-SSS-SSSEESSEEE
T ss_pred CCeECcCCCCCcCcCCeEE
Confidence 4678999998 99988886
No 199
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=34.44 E-value=14 Score=39.43 Aligned_cols=11 Identities=64% Similarity=1.355 Sum_probs=10.0
Q ss_pred ccccCCCCcee
Q 048750 10 ECKICTRPFTV 20 (344)
Q Consensus 10 eckic~rpft~ 20 (344)
.||||.|-||.
T Consensus 635 kCKiCgRAFtT 645 (958)
T KOG1074|consen 635 KCKICGRAFTT 645 (958)
T ss_pred ccccccchhcc
Confidence 59999999995
No 200
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=33.57 E-value=38 Score=33.64 Aligned_cols=8 Identities=25% Similarity=0.260 Sum_probs=4.0
Q ss_pred CCCCCCCC
Q 048750 336 MDPQRMGA 343 (344)
Q Consensus 336 ~~P~~mga 343 (344)
-..+.|||
T Consensus 259 ~~k~~~~A 266 (480)
T KOG2675|consen 259 ANKGGRGA 266 (480)
T ss_pred cccccHHH
Confidence 34555555
No 201
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=33.06 E-value=10 Score=37.01 Aligned_cols=74 Identities=12% Similarity=0.105 Sum_probs=55.0
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC--CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ--KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~--kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
.++++|++|...+...++-+.|..+|+|...++... ..++-|.|....+...|+... |. .+.-....+..-+|.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~~-gr-e~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRSH-GR-ERKRQHSRRAIIKPH 226 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHhc-ch-hhhhhhhhhhhcCcc
Confidence 478999999999999999999999999988776554 456669999999988888765 53 443333333333443
No 202
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=32.27 E-value=22 Score=37.83 Aligned_cols=63 Identities=17% Similarity=0.386 Sum_probs=43.7
Q ss_pred cccccCCCCceeeeecC---CCCCCccceeeehhccccc--------------------cccccccccCCCCCcHHHHHh
Q 048750 9 KECKICTRPFTVFRWRP---GRDARFKKTEICQTCSKLK--------------------NVCQVCLLDLEYGLPVQVRDT 65 (344)
Q Consensus 9 ~eckic~rpft~f~w~~---~~~~~~~~t~ic~~ca~~k--------------------n~cq~c~~dl~~~~p~~~rd~ 65 (344)
..|.+|.++|+.+.=.. .++-|.=--.+|..|+.-+ -||..|.-|++-.+=...-++
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq~EnLlQm~LLca 540 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKEYETVSQLHYLGA 540 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHHHHhHHhhHHHHH
Confidence 56999999998661101 1134444567899998533 399999988887777777777
Q ss_pred hhccCC
Q 048750 66 ALSINS 71 (344)
Q Consensus 66 ~l~~~~ 71 (344)
.+.+.+
T Consensus 541 lf~laG 546 (1374)
T PTZ00303 541 LFAFAG 546 (1374)
T ss_pred HHHHcc
Confidence 776654
No 203
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=32.01 E-value=1.2e+02 Score=22.65 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=42.1
Q ss_pred EEEeccCCCCCCHHHHHHHhhc-CC-CeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHh
Q 048750 196 TLYVGGVDARITEQDLRDNFYA-HG-EIESIKMHPQ---KAFAFVTYTTREGAEKAAEEL 250 (344)
Q Consensus 196 tLfVgnL~~~~te~~L~~~F~~-fG-~I~~v~i~~~---kg~aFV~F~~~~~A~~A~~~l 250 (344)
.-|+..++...+..+|++.++. || .|.+|+.+.- ..=|||++..-..|......+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 3566678889999999999986 55 5666655442 357999999999998887766
No 204
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=31.54 E-value=64 Score=24.80 Aligned_cols=33 Identities=9% Similarity=0.201 Sum_probs=25.1
Q ss_pred EEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 233 AFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 233 aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
|.|+|.+..-|++.+..-.-.+.+++..+.|.-
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 689999999999998754444567777776654
No 205
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=29.58 E-value=14 Score=21.29 Aligned_cols=11 Identities=27% Similarity=0.948 Sum_probs=9.0
Q ss_pred cccccCCCCce
Q 048750 9 KECKICTRPFT 19 (344)
Q Consensus 9 ~eckic~rpft 19 (344)
=+|.+|.+-|+
T Consensus 15 ~~C~~C~k~F~ 25 (26)
T PF13465_consen 15 YKCPYCGKSFS 25 (26)
T ss_dssp EEESSSSEEES
T ss_pred CCCCCCcCeeC
Confidence 37999999885
No 206
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=29.33 E-value=47 Score=29.92 Aligned_cols=42 Identities=26% Similarity=0.513 Sum_probs=25.5
Q ss_pred CCceeeeecCCCCCCccceeeehhccccccccccccccCCCCCcHHHHHhhhccCC
Q 048750 16 RPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINS 71 (344)
Q Consensus 16 rpft~f~w~~~~~~~~~~t~ic~~ca~~kn~cq~c~~dl~~~~p~~~rd~~l~~~~ 71 (344)
+-|.+|||+|+.-.---+ =|+=-.||+--=|+ |-|+++++.+
T Consensus 47 KtFeIYRwnPd~pg~kP~-------------~Q~y~vDL~~CGpM-vLDALiKIKn 88 (288)
T KOG3049|consen 47 KTFEIYRWNPDNPGDKPH-------------LQTYEVDLNDCGPM-VLDALIKIKN 88 (288)
T ss_pred ceEEEEecCCCCCCCCcc-------------ceeeeecHHhcchH-HHHHHHHhhc
Confidence 469999999955321111 13334455544465 7888888764
No 207
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=29.28 E-value=51 Score=31.15 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=23.5
Q ss_pred EEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 233 AFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 233 aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
|||+|++..+|..|++.+.. .+++.++|+.|-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~---~~~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS---KRPNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc---CCCCCceEeeCC
Confidence 79999999999999997633 234555666553
No 208
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=28.96 E-value=13 Score=28.37 Aligned_cols=15 Identities=47% Similarity=1.232 Sum_probs=14.0
Q ss_pred eehhccccccccccc
Q 048750 36 ICQTCSKLKNVCQVC 50 (344)
Q Consensus 36 ic~~ca~~kn~cq~c 50 (344)
-|+|||=.|.+|--|
T Consensus 71 YC~tCAY~KgiCAMC 85 (100)
T KOG3476|consen 71 YCQTCAYKKGICAMC 85 (100)
T ss_pred hHhHhhhhhhHHHHh
Confidence 599999999999998
No 209
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=28.88 E-value=29 Score=28.11 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=24.5
Q ss_pred CCHHHHHHHhhcCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHh
Q 048750 206 ITEQDLRDNFYAHGEIESIKMHPQ----KAFAFVTYTTREGAEKAAEEL 250 (344)
Q Consensus 206 ~te~~L~~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~A~~A~~~l 250 (344)
++.+.|.+.|+.|..++ ++.+.+ .|++.|.|..--+.-.-+.+|
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHHH
Confidence 35578999999998875 444443 579999999655444433344
No 210
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=28.80 E-value=24 Score=22.98 Aligned_cols=31 Identities=26% Similarity=0.649 Sum_probs=17.2
Q ss_pred ccccCCCCceeeeecCCCCCCcc--ceeeehhcccccc
Q 048750 10 ECKICTRPFTVFRWRPGRDARFK--KTEICQTCSKLKN 45 (344)
Q Consensus 10 eckic~rpft~f~w~~~~~~~~~--~t~ic~~ca~~kn 45 (344)
+|.||-+.| .+.+..+.. --.+|..|.+...
T Consensus 1 ~C~~C~~~~-----~~~~~~~l~~CgH~~C~~C~~~~~ 33 (44)
T PF14634_consen 1 HCNICFEKY-----SEERRPRLTSCGHIFCEKCLKKLK 33 (44)
T ss_pred CCcCcCccc-----cCCCCeEEcccCCHHHHHHHHhhc
Confidence 689999998 222111111 1247777776555
No 211
>PF09293 RNaseH_C: T4 RNase H, C terminal; InterPro: IPR020045 This entry represents the C-terminal domain of 5' to 3' exonucleases. The 5'-3' exonucleases are conserved in organisms as diverse as bacteriophage and mammals. It adopts a SAM fold consisting of 4-5 helices packed into a bundle of two orthogonally packed alpha-hairpins. This domain is involved in interactions with DNA and proteins. 5' to 3' exonucleases that contain this domain include: Bacteriophage T4 RNase H, which has sequence similarity to the RAD2 family of eukaryotic proteins []. 5' to 3' exonuclease domain of DNA polymerase Taq, which is homologous to Escherichia coli DNA polymerase I (pol I) [, ]. Bacteriophage T5 5'-exonuclease, which are structure-specific endonucleases []. Flap endonuclease-1 (Fen-1 nuclease), a structure specific nuclease that is an essential enzyme for eukaryotic DNA replication and repair []. ; GO: 0003677 DNA binding, 0003824 catalytic activity; PDB: 1TFR_A 3H8S_A 2IHN_A 3H7I_A 3H8W_A 3H8J_A.
Probab=28.78 E-value=26 Score=28.63 Aligned_cols=37 Identities=27% Similarity=0.566 Sum_probs=22.2
Q ss_pred cccCCCCCcHHHHHhhhccCCCCCCCcchhhHHHHHHH
Q 048750 51 LLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAEE 88 (344)
Q Consensus 51 ~~dl~~~~p~~~rd~~l~~~~~~~~~~~~~n~~~~~~~ 88 (344)
|+|++| ||-.++|++|..=+....|--...-.||..+
T Consensus 74 LIDFd~-IPd~I~~~Iie~yn~~k~~~rgk~y~YFvk~ 110 (122)
T PF09293_consen 74 LIDFDY-IPDDIRDSIIEEYNNYKPPPRGKMYKYFVKN 110 (122)
T ss_dssp HH-GGG-S-HHHHHHHHHHHHT-----TTHHHHHHHHT
T ss_pred hhcHhh-chHHHHHHHHHHHhcCCCCCccchHHHHHHh
Confidence 679997 9999999999765433344344555788653
No 212
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=28.52 E-value=2e+02 Score=20.71 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=41.4
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCC-HHHHHHHHHH
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTT-REGAEKAAEE 249 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~-~~~A~~A~~~ 249 (344)
.+|.|.++.-.-=...+.+....-..+.++.+....+-++|.|.+ ....+..+++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~a 59 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEA 59 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHH
Confidence 467777776555567788889888889999999999999999998 3444444333
No 213
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=27.56 E-value=35 Score=26.24 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=22.0
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhh
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFY 216 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~ 216 (344)
..+.++|-|.|||..++|++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 34578999999999999999998764
No 214
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=27.26 E-value=40 Score=22.86 Aligned_cols=31 Identities=42% Similarity=1.164 Sum_probs=23.3
Q ss_pred ccccCCC-CceeeeecCCCCCCccceeeehhcccccccccccccc
Q 048750 10 ECKICTR-PFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLD 53 (344)
Q Consensus 10 eckic~r-pft~f~w~~~~~~~~~~t~ic~~ca~~kn~cq~c~~d 53 (344)
.|-.|.. |++-+||+ |..|.. =+.||.|...
T Consensus 2 ~Cd~C~~~pi~g~Ryk------------C~~C~d-~DLC~~Cf~~ 33 (49)
T cd02334 2 KCNICKEFPITGFRYR------------CLKCFN-YDLCQSCFFS 33 (49)
T ss_pred CCCCCCCCCceeeeEE------------CCCCCC-cCchHHHHhC
Confidence 5888985 88888886 677764 5788888653
No 215
>PF07711 RabGGT_insert: Rab geranylgeranyl transferase alpha-subunit, insert domain ; InterPro: IPR009087 Rab geranylgeranyltransferase (RabGGT) catalyses the transfer of geranylgeranyl groups to the C-terminal cysteine residues of Rab proteins, Ras-related small GTPases that function in intracellular vesicular transport []. RabGGT is only able to prenylate Rab when it is complexed to the Rab escort protein (REP), after which REP remains bound to the prenylated Rab and delivers it to its target membrane. RabGGT is a member of the protein prenyltransferase family (IPR008940 from INTERPRO), all of which are heterodimers consisting of alpha and beta subunits. RabGGT is distinct from other members of the prenyltransferase family because of the presence of an Ig-like insert domain in the alpha subunit that is folded into an eight-stranded sandwich between two helices in the helical domain.; GO: 0004663 Rab geranylgeranyltransferase activity, 0008270 zinc ion binding; PDB: 1DCE_C 1LTX_A.
Probab=26.59 E-value=31 Score=27.03 Aligned_cols=48 Identities=21% Similarity=0.428 Sum_probs=29.4
Q ss_pred eeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCCCC
Q 048750 221 IESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQR 272 (344)
Q Consensus 221 I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~~~ 272 (344)
|.-+.+.++-++--|.|+.+-.| ..+.| .++++|++|.|+|-.|....
T Consensus 3 irCl~VSr~e~~l~V~FSrPv~v--~~~~L--lL~~D~~Pl~VeWRtp~gr~ 50 (102)
T PF07711_consen 3 IRCLHVSRDEACLTVAFSRPVNV--GSETL--LLFVDGSPLTVEWRTPDGRN 50 (102)
T ss_dssp EEEEEEETTTTEEEEEEEEEE-S--TTB-E--EEEESSSEE----B-TTSS-
T ss_pred EEEEEEecccCeEEEEecceeee--eeeeE--EEEEcCCceEEEeeCCCCCC
Confidence 45566777788999999988777 23333 25789999999999886543
No 216
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.25 E-value=1.2e+02 Score=29.24 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=5.5
Q ss_pred CCEEEEEeCC
Q 048750 230 KAFAFVTYTT 239 (344)
Q Consensus 230 kg~aFV~F~~ 239 (344)
.-++||.=.+
T Consensus 84 pP~c~VnPT~ 93 (365)
T KOG2391|consen 84 PPICYVNPTS 93 (365)
T ss_pred CCeEEecCCc
Confidence 3466666544
No 217
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=25.13 E-value=1.7e+02 Score=26.87 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=0.0
Q ss_pred hccCCCCCcccccccccCCCCCCCCCCCCCCCCCCCC-----------CCCCCCCCCCCCCCCCCC
Q 048750 287 IAHSGMLPRSLISQQQNQYQQPGAQDQAAPTPYFNIP-----------PPPQQDRAYYPSMDPQRM 341 (344)
Q Consensus 287 ~~~~g~~p~~~~~~~~~~~ppp~~~p~~p~~~~~~~P-----------Pp~~~~~~~yP~~~P~~m 341 (344)
+-++++.++. +..+..++|.+.++.+++..+|+++ |.+.+.++..|.-.+++|
T Consensus 144 p~p~~~~~p~--gmp~~~ppp~g~pp~~~pgv~mp~~g~pg~~~pp~mpi~~g~p~~~p~pg~p~~ 207 (341)
T KOG2893|consen 144 PMPSGMMPPR--GMPGAYPPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGHGPPGGPPMPGPPQR 207 (341)
T ss_pred CCCCCCCCCC--CCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCcCcCCCCCCCCCCCCCCCcc
No 218
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=24.95 E-value=71 Score=29.89 Aligned_cols=34 Identities=29% Similarity=0.536 Sum_probs=26.6
Q ss_pred cEEEeccCCCC------------CCHHHHHHHhhcCCCeeEEEEeC
Q 048750 195 KTLYVGGVDAR------------ITEQDLRDNFYAHGEIESIKMHP 228 (344)
Q Consensus 195 ~tLfVgnL~~~------------~te~~L~~~F~~fG~I~~v~i~~ 228 (344)
.|||+.+||-. -+|+-|+..|..||+|..|.|.-
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 47888888632 35778999999999999988754
No 219
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=24.33 E-value=1.3e+02 Score=30.46 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=8.9
Q ss_pred HHHHHHHhhcCC
Q 048750 208 EQDLRDNFYAHG 219 (344)
Q Consensus 208 e~~L~~~F~~fG 219 (344)
+..+..+|++-|
T Consensus 266 dp~~nn~~s~ag 277 (569)
T KOG3671|consen 266 DPPLNNLFSSAG 277 (569)
T ss_pred ChhhhcccccCC
Confidence 456888888875
No 220
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=22.55 E-value=1.8e+02 Score=28.83 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=9.9
Q ss_pred HHHHhhhcCcccccCCccccccc
Q 048750 111 TILKLQRTQPYYKRNRAHVCSFY 133 (344)
Q Consensus 111 ~l~~lar~~py~~~~~~~~C~ff 133 (344)
+...|.|.+=-|+..|+..-.||
T Consensus 104 ~~~~L~r~eveye~kr~~~sqYy 126 (487)
T KOG4672|consen 104 MFSHLQRREVEYEDKRPEDSQYY 126 (487)
T ss_pred HHHHHHHHhhhhhhhchhhhhhh
Confidence 33334433334444444444444
No 221
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=22.10 E-value=42 Score=31.74 Aligned_cols=25 Identities=24% Similarity=0.603 Sum_probs=21.2
Q ss_pred ccccccc-cCCcCCCCCCCCCCCCCC
Q 048750 127 AHVCSFY-VRGECTRGAECPYRHEMP 151 (344)
Q Consensus 127 ~~~C~ff-~~G~C~rG~~Cpy~H~~p 151 (344)
...|.-| .-|.|..|..|+|.|..-
T Consensus 274 TePcinwe~sGyc~yg~Rc~F~hgd~ 299 (351)
T COG5063 274 TEPCINWEKSGYCPYGLRCCFKHGDD 299 (351)
T ss_pred cCCccchhhcccCccccccccccCCh
Confidence 3569999 679999999999999654
No 222
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=22.09 E-value=22 Score=32.11 Aligned_cols=67 Identities=31% Similarity=0.451 Sum_probs=53.9
Q ss_pred CCCCCCCCCCccEEEecc----CCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHh
Q 048750 184 PSLEPPEDESIKTLYVGG----VDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEEL 250 (344)
Q Consensus 184 ~~~~~p~d~~~~tLfVgn----L~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l 250 (344)
.++...++....+++-|+ |...++++.+...|+.-|.+..+++... +.++|+++....+.-.++...
T Consensus 70 ng~~l~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y 145 (267)
T KOG4454|consen 70 NGDDLEEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLY 145 (267)
T ss_pred ccchhccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhh
Confidence 344445666778889998 8888999999999999999999988764 679999988777777776654
No 223
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=21.67 E-value=24 Score=19.58 Aligned_cols=10 Identities=40% Similarity=1.228 Sum_probs=6.4
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
.|+||.+-|+
T Consensus 2 ~C~~C~~~f~ 11 (25)
T PF12874_consen 2 YCDICNKSFS 11 (25)
T ss_dssp EETTTTEEES
T ss_pred CCCCCCCCcC
Confidence 3777776664
No 224
>KOG4537 consensus Zn-ribbon-containing protein implicated in mitosis [Cell cycle control, cell division, chromosome partitioning; Defense mechanisms]
Probab=21.47 E-value=36 Score=28.89 Aligned_cols=22 Identities=41% Similarity=0.995 Sum_probs=17.7
Q ss_pred eeeehhcccc-------ccccccccccCC
Q 048750 34 TEICQTCSKL-------KNVCQVCLLDLE 55 (344)
Q Consensus 34 t~ic~~ca~~-------kn~cq~c~~dl~ 55 (344)
-+||-+|.++ +--|-+|.+|++
T Consensus 40 de~Cp~C~~Ilm~dr~~~~~CVsC~~~~d 68 (178)
T KOG4537|consen 40 DEICPKCEKILMRDRDNPMFCVSCINDLD 68 (178)
T ss_pred hhhcchHHHHHHhhccCceEEEeeecccc
Confidence 3789999875 567999999884
No 225
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=20.96 E-value=45 Score=30.52 Aligned_cols=36 Identities=36% Similarity=0.790 Sum_probs=26.0
Q ss_pred ceeeehhcccccc-----ccccccccCCCC---------CcHHHHHhhhcc
Q 048750 33 KTEICQTCSKLKN-----VCQVCLLDLEYG---------LPVQVRDTALSI 69 (344)
Q Consensus 33 ~t~ic~~ca~~kn-----~cq~c~~dl~~~---------~p~~~rd~~l~~ 69 (344)
+-.||-+||-.=| .|.+=|.|+.-| +|| +||-+..+
T Consensus 54 R~gICGSCam~ING~prLAC~t~~~~~~~~~i~iePL~~fpV-IkDLVVD~ 103 (234)
T COG0479 54 REGICGSCAMNINGKPRLACKTLMKDLEEGVITIEPLPNFPV-IRDLVVDM 103 (234)
T ss_pred cCCcCCcceeEECCccccchhchhhhccCCceEEEECCCCCc-eeeeeecc
Confidence 4578999986544 688888898776 666 66666544
No 226
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=20.64 E-value=1.3e+02 Score=29.33 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=44.9
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCC-eeEEEEeCC--------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeE
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGE-IESIKMHPQ--------KAFAFVTYTTREGAEKAAEELSNKLVIKGLR 260 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~-I~~v~i~~~--------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~ 260 (344)
...+.|.+||+.+++++|.+....|-. +....+... .+.|||.|...++.......+++-++|+.+.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 456778899999999888877766532 222222211 5689999999999877777775544454443
No 227
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.51 E-value=53 Score=31.81 Aligned_cols=34 Identities=29% Similarity=0.720 Sum_probs=28.1
Q ss_pred ccccCCccccccc--cCCcCCCCCCCCCCCCCCCCC
Q 048750 121 YYKRNRAHVCSFY--VRGECTRGAECPYRHEMPVTG 154 (344)
Q Consensus 121 y~~~~~~~~C~ff--~~G~C~rG~~Cpy~H~~p~~~ 154 (344)
|.+......|.+| -.|.|..|..|.|+|..|...
T Consensus 243 ~~~~~s~~~c~yf~~~~g~cPf~s~~~y~h~~~~~~ 278 (344)
T KOG1039|consen 243 YEAEMSAKDCKYFSQGLGSCPFGSKCFYKHLLPSGA 278 (344)
T ss_pred HHHHhhccchhhhcCCCCCCCCCCcccccccccccc
Confidence 5566778899999 466899999999999998543
No 228
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=20.04 E-value=88 Score=21.03 Aligned_cols=30 Identities=27% Similarity=0.836 Sum_probs=21.7
Q ss_pred ccccCCC-CceeeeecCCCCCCccceeeehhccccccccccccc
Q 048750 10 ECKICTR-PFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLL 52 (344)
Q Consensus 10 eckic~r-pft~f~w~~~~~~~~~~t~ic~~ca~~kn~cq~c~~ 52 (344)
.|..|.+ |++=+||+ |..|.. =++|+.|..
T Consensus 2 ~C~~C~~~~i~g~R~~------------C~~C~d-ydLC~~Cf~ 32 (49)
T cd02345 2 SCSACRKQDISGIRFP------------CQVCRD-YSLCLGCYT 32 (49)
T ss_pred cCCCCCCCCceEeeEE------------CCCCCC-cCchHHHHh
Confidence 4889998 99888775 666643 467777755
Done!