Query 048750
Match_columns 344
No_of_seqs 454 out of 2684
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 22:20:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048750.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048750hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1l_A PRE-mRNA-splicing facto 100.0 5.4E-31 1.9E-35 238.9 7.8 153 111-271 51-231 (240)
2 1sjq_A Polypyrimidine tract-bi 99.8 4.6E-19 1.6E-23 140.6 10.7 83 192-274 14-97 (105)
3 4fxv_A ELAV-like protein 1; RN 99.8 1.5E-18 5.1E-23 136.4 10.3 74 194-268 19-98 (99)
4 2cq1_A PTB-like protein L; RRM 99.8 7.7E-18 2.6E-22 132.9 14.2 83 191-273 12-95 (101)
5 2ytc_A PRE-mRNA-splicing facto 99.8 4E-18 1.4E-22 129.4 10.6 81 187-267 5-85 (85)
6 2lxi_A RNA-binding protein 10; 99.8 1.7E-18 5.7E-23 134.0 7.8 79 194-272 1-86 (91)
7 1wex_A Hypothetical protein (r 99.7 1.1E-17 3.7E-22 132.8 12.6 83 191-273 12-95 (104)
8 1x4d_A Matrin 3; structural ge 99.7 9.1E-18 3.1E-22 132.7 11.9 79 193-271 14-94 (102)
9 1why_A Hypothetical protein ri 99.7 1.2E-17 4.3E-22 130.1 12.0 81 190-271 13-95 (97)
10 3r27_A HnRNP L, heterogeneous 99.7 1.5E-17 5.1E-22 130.7 12.2 78 193-270 20-98 (100)
11 2ad9_A Polypyrimidine tract-bi 99.7 7.3E-18 2.5E-22 136.8 10.2 84 192-275 29-113 (119)
12 2cq3_A RNA-binding protein 9; 99.7 6.6E-17 2.3E-21 127.3 15.1 84 189-273 10-97 (103)
13 2cqi_A Nucleolysin TIAR; RNA r 99.7 6.4E-17 2.2E-21 127.4 14.9 84 189-273 10-97 (103)
14 2lkz_A RNA-binding protein 5; 99.7 1.2E-17 4E-22 130.4 9.5 80 189-268 4-94 (95)
15 4f25_A Polyadenylate-binding p 99.7 1.5E-17 5.2E-22 134.1 10.4 78 194-272 5-86 (115)
16 2cph_A RNA binding motif prote 99.7 3.3E-17 1.1E-21 129.8 12.1 85 188-273 9-101 (107)
17 1x4g_A Nucleolysin TIAR; struc 99.7 3.9E-17 1.3E-21 130.1 12.5 81 192-273 23-103 (109)
18 1x4c_A Splicing factor, argini 99.7 1.1E-16 3.7E-21 127.5 14.6 84 188-273 9-97 (108)
19 2cpj_A Non-POU domain-containi 99.7 4.4E-17 1.5E-21 127.5 12.1 82 191-273 12-93 (99)
20 2la4_A Nuclear and cytoplasmic 99.7 1.8E-17 6.1E-22 130.1 9.8 77 192-269 25-101 (101)
21 2dnq_A RNA-binding protein 4B; 99.7 5.3E-17 1.8E-21 124.8 11.8 80 191-273 5-84 (90)
22 2wbr_A GW182, gawky, LD47780P; 99.7 3.9E-17 1.3E-21 124.5 10.8 74 193-267 6-79 (89)
23 1x4a_A Splicing factor, argini 99.7 1.2E-16 3.9E-21 127.3 13.9 84 189-273 17-103 (109)
24 2do4_A Squamous cell carcinoma 99.7 7.6E-17 2.6E-21 126.3 12.6 83 189-272 12-99 (100)
25 2dgx_A KIAA0430 protein; RRM d 99.7 8E-17 2.8E-21 125.5 12.6 80 192-272 7-93 (96)
26 2dgo_A Cytotoxic granule-assoc 99.7 9.9E-17 3.4E-21 128.8 13.4 84 189-273 10-99 (115)
27 2dgt_A RNA-binding protein 30; 99.7 1.5E-16 5.1E-21 122.7 13.6 82 189-273 5-86 (92)
28 2dgs_A DAZ-associated protein 99.7 9.6E-17 3.3E-21 125.4 12.5 82 190-273 6-93 (99)
29 1x5u_A Splicing factor 3B subu 99.7 9.5E-17 3.3E-21 126.7 12.5 84 189-273 10-99 (105)
30 1whw_A Hypothetical protein ri 99.7 1.2E-16 4.2E-21 124.7 12.9 82 191-273 5-92 (99)
31 1x4h_A RNA-binding protein 28; 99.7 1.5E-16 5E-21 126.8 13.5 85 189-273 10-105 (111)
32 3md1_A Nuclear and cytoplasmic 99.7 6.5E-17 2.2E-21 122.0 10.7 75 195-270 2-82 (83)
33 2dgu_A Heterogeneous nuclear r 99.7 1.4E-16 4.7E-21 125.6 13.0 80 191-273 8-87 (103)
34 1x4f_A Matrin 3; structural ge 99.7 2.6E-17 9E-22 132.1 8.8 80 193-272 24-105 (112)
35 2e5h_A Zinc finger CCHC-type a 99.7 1.4E-16 4.8E-21 123.1 12.5 77 190-267 12-94 (94)
36 2cq0_A Eukaryotic translation 99.7 1.4E-16 4.8E-21 125.4 12.6 82 191-273 12-99 (103)
37 2dnm_A SRP46 splicing factor; 99.7 7.1E-17 2.4E-21 127.1 10.9 85 188-273 7-97 (103)
38 2d9p_A Polyadenylate-binding p 99.7 9.5E-17 3.2E-21 126.4 11.6 83 191-274 12-98 (103)
39 2cqh_A IGF-II mRNA-binding pro 99.7 4.2E-17 1.4E-21 126.0 9.3 82 191-273 5-87 (93)
40 2dnh_A Bruno-like 5, RNA bindi 99.7 1.2E-16 4.1E-21 126.2 11.9 81 192-273 13-101 (105)
41 3bs9_A Nucleolysin TIA-1 isofo 99.7 7E-17 2.4E-21 122.9 10.1 76 193-269 5-86 (87)
42 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.3E-16 4.5E-21 125.3 11.9 82 192-274 10-97 (102)
43 1x5t_A Splicing factor 3B subu 99.7 1E-16 3.4E-21 124.4 10.8 81 193-274 4-91 (96)
44 3s8s_A Histone-lysine N-methyl 99.7 1E-16 3.5E-21 128.4 11.1 76 193-269 5-86 (110)
45 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.2E-16 4E-21 121.2 10.8 75 192-267 5-85 (85)
46 2jvo_A Nucleolar protein 3; nu 99.7 1.1E-16 3.7E-21 127.7 11.1 80 190-272 27-106 (108)
47 2cpz_A CUG triplet repeat RNA- 99.7 1.7E-16 5.8E-21 127.5 12.3 82 191-273 22-109 (115)
48 2err_A Ataxin-2-binding protei 99.7 9E-17 3.1E-21 128.3 10.6 81 189-270 24-108 (109)
49 2dgv_A HnRNP M, heterogeneous 99.7 8.9E-17 3.1E-21 123.7 9.8 81 191-272 5-89 (92)
50 2x1f_A MRNA 3'-END-processing 99.7 1.7E-16 5.9E-21 123.4 11.5 76 194-270 2-83 (96)
51 2cqd_A RNA-binding region cont 99.7 3.1E-16 1.1E-20 126.1 13.3 82 187-270 10-97 (116)
52 2dnz_A Probable RNA-binding pr 99.7 2.1E-16 7.1E-21 122.4 11.8 80 193-273 4-89 (95)
53 4a8x_A RNA-binding protein wit 99.7 1.9E-16 6.5E-21 120.6 11.3 78 193-271 3-87 (88)
54 1oo0_B CG8781-PA, drosophila Y 99.7 1.5E-16 5.1E-21 126.7 11.2 83 189-272 21-109 (110)
55 2dnp_A RNA-binding protein 14; 99.7 2.6E-16 8.8E-21 120.9 12.1 80 191-273 6-85 (90)
56 1whx_A Hypothetical protein ri 99.7 5.4E-17 1.8E-21 130.1 8.4 81 191-272 7-87 (111)
57 2cqc_A Arginine/serine-rich sp 99.7 2.3E-16 7.9E-21 122.0 11.7 78 190-268 11-94 (95)
58 2cpf_A RNA binding motif prote 99.7 1.6E-16 5.4E-21 123.9 10.8 80 193-273 4-92 (98)
59 1x5p_A Negative elongation fac 99.7 7.5E-16 2.6E-20 120.0 14.5 79 192-273 13-91 (97)
60 1x5s_A Cold-inducible RNA-bind 99.7 1.7E-16 5.9E-21 124.6 10.8 82 191-273 9-96 (102)
61 2cpe_A RNA-binding protein EWS 99.7 3.7E-16 1.3E-20 125.1 12.7 84 189-273 10-107 (113)
62 2cpd_A Apobec-1 stimulating pr 99.7 8.8E-16 3E-20 120.0 14.5 78 192-272 13-92 (99)
63 2ywk_A Putative RNA-binding pr 99.7 1.5E-16 5.1E-21 123.2 9.9 79 189-268 11-94 (95)
64 2dgp_A Bruno-like 4, RNA bindi 99.7 2.6E-16 8.9E-21 124.4 11.3 83 190-273 9-100 (106)
65 2do0_A HnRNP M, heterogeneous 99.7 5.9E-16 2E-20 123.9 13.5 82 190-272 11-97 (114)
66 2xnq_A Nuclear polyadenylated 99.7 3.8E-16 1.3E-20 122.0 12.0 77 191-270 19-96 (97)
67 1nu4_A U1A RNA binding domain; 99.7 2.1E-16 7E-21 122.9 10.2 81 189-270 3-90 (97)
68 2a3j_A U1 small nuclear ribonu 99.7 1.5E-16 5.2E-21 130.7 9.9 80 190-270 25-111 (127)
69 2hvz_A Splicing factor, argini 99.7 8.1E-17 2.8E-21 126.3 7.9 77 195-272 1-78 (101)
70 2fy1_A RNA-binding motif prote 99.7 2.7E-16 9.3E-21 126.9 10.9 81 191-272 4-89 (116)
71 1p27_B RNA-binding protein 8A; 99.7 1.4E-16 4.7E-21 126.0 8.9 79 191-270 20-104 (106)
72 2dh8_A DAZ-associated protein 99.7 2.4E-16 8.3E-21 124.5 10.1 83 189-273 11-99 (105)
73 1u6f_A Tcubp1, RNA-binding pro 99.7 4.4E-16 1.5E-20 129.2 12.2 84 189-273 37-126 (139)
74 1wi8_A EIF-4B, eukaryotic tran 99.7 9E-16 3.1E-20 121.0 13.1 80 191-273 12-98 (104)
75 2khc_A Testis-specific RNP-typ 99.7 2.5E-16 8.5E-21 127.0 9.9 77 190-267 36-118 (118)
76 2dis_A Unnamed protein product 99.7 3.1E-16 1.1E-20 124.6 10.1 81 192-272 6-95 (109)
77 2rs2_A Musashi-1, RNA-binding 99.7 4.6E-16 1.6E-20 124.2 10.9 80 191-272 22-107 (109)
78 1p1t_A Cleavage stimulation fa 99.7 6E-17 2.1E-21 127.6 5.6 81 189-270 3-89 (104)
79 2dhg_A TRNA selenocysteine ass 99.7 2.2E-16 7.6E-21 124.4 8.5 83 190-273 5-94 (104)
80 2cq2_A Hypothetical protein LO 99.7 5.2E-16 1.8E-20 124.8 10.6 79 192-271 23-108 (114)
81 2kvi_A Nuclear polyadenylated 99.7 2.3E-16 7.7E-21 122.8 8.3 78 192-272 8-86 (96)
82 2dng_A Eukaryotic translation 99.7 1.2E-15 4E-20 120.1 12.5 80 191-273 12-97 (103)
83 2e5j_A Methenyltetrahydrofolat 99.7 4.1E-16 1.4E-20 121.5 9.7 78 192-271 17-96 (97)
84 2div_A TRNA selenocysteine ass 99.7 4.3E-16 1.5E-20 121.6 9.8 78 192-270 7-95 (99)
85 2cqg_A TDP-43, TAR DNA-binding 99.7 1.6E-15 5.3E-20 119.3 12.9 81 189-272 10-96 (103)
86 1wf1_A RNA-binding protein RAL 99.6 1.1E-15 3.8E-20 121.8 12.1 76 193-271 26-102 (110)
87 2jrs_A RNA-binding protein 39; 99.6 2.9E-16 9.9E-21 125.2 8.5 79 191-270 23-107 (108)
88 1s79_A Lupus LA protein; RRM, 99.6 2.9E-16 1E-20 124.2 8.5 77 190-268 7-88 (103)
89 3ex7_B RNA-binding protein 8A; 99.6 4.1E-16 1.4E-20 127.2 9.6 83 190-273 18-106 (126)
90 3ucg_A Polyadenylate-binding p 99.6 6E-16 2.1E-20 118.2 10.0 76 193-270 5-86 (89)
91 3ulh_A THO complex subunit 4; 99.6 7.7E-16 2.6E-20 121.9 10.9 77 190-267 25-106 (107)
92 2la6_A RNA-binding protein FUS 99.6 4.9E-16 1.7E-20 121.4 9.6 77 190-267 9-99 (99)
93 2jvr_A Nucleolar protein 3; RN 99.6 6E-16 2E-20 124.1 10.1 77 193-270 27-106 (111)
94 2kxn_B Transformer-2 protein h 99.6 4E-16 1.4E-20 128.4 9.3 80 191-271 43-128 (129)
95 2i2y_A Fusion protein consists 99.6 6.4E-16 2.2E-20 130.0 10.6 79 191-270 70-149 (150)
96 2bz2_A Negative elongation fac 99.6 5.7E-16 2E-20 126.1 9.6 101 156-272 14-114 (121)
97 2cpi_A CCR4-NOT transcription 99.6 1.7E-15 5.9E-20 121.1 12.2 78 192-270 13-102 (111)
98 2lea_A Serine/arginine-rich sp 99.6 2.7E-16 9.2E-21 130.5 7.6 86 187-273 40-131 (135)
99 2fc9_A NCL protein; structure 99.6 3.2E-15 1.1E-19 117.1 13.1 79 190-272 11-94 (101)
100 3p5t_L Cleavage and polyadenyl 99.6 9.7E-17 3.3E-21 123.4 4.3 76 195-271 2-85 (90)
101 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.7E-15 5.7E-20 128.3 12.1 81 192-273 37-123 (156)
102 3ns6_A Eukaryotic translation 99.6 2.2E-16 7.4E-21 124.1 6.0 77 192-269 4-93 (100)
103 3s7r_A Heterogeneous nuclear r 99.6 1.2E-15 4E-20 116.2 9.9 75 190-266 7-87 (87)
104 1x5o_A RNA binding motif, sing 99.6 1.4E-15 5E-20 121.8 10.9 80 189-269 20-112 (114)
105 1sjr_A Polypyrimidine tract-bi 99.6 1E-15 3.4E-20 130.5 10.4 87 185-272 37-127 (164)
106 2kt5_A RNA and export factor-b 99.6 4.3E-15 1.5E-19 121.0 13.5 80 191-271 32-116 (124)
107 2dgw_A Probable RNA-binding pr 99.6 2.8E-15 9.4E-20 115.2 11.6 77 191-270 7-88 (91)
108 3d2w_A TAR DNA-binding protein 99.6 1.8E-15 6.1E-20 116.3 10.5 77 191-271 8-86 (89)
109 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.2E-15 7.6E-20 124.7 11.8 75 191-266 60-140 (140)
110 2kn4_A Immunoglobulin G-bindin 99.6 3.1E-15 1.1E-19 126.7 12.9 82 191-273 67-154 (158)
111 1x4b_A Heterogeneous nuclear r 99.6 2.1E-15 7.1E-20 121.3 11.1 80 192-273 25-110 (116)
112 1wg1_A KIAA1579 protein, homol 99.6 1.4E-15 4.7E-20 116.4 9.4 76 193-270 4-79 (88)
113 2m2b_A RNA-binding protein 10; 99.6 5.3E-16 1.8E-20 127.8 7.6 82 189-272 18-111 (131)
114 2cqp_A RNA-binding protein 12; 99.6 1.2E-15 4E-20 118.9 9.1 79 191-270 12-96 (98)
115 2cq4_A RNA binding motif prote 99.6 8.2E-16 2.8E-20 123.3 8.0 79 190-270 21-105 (114)
116 3lqv_A PRE-mRNA branch site pr 99.6 1.5E-15 5.3E-20 121.8 9.6 79 193-272 7-88 (115)
117 2nlw_A Eukaryotic translation 99.6 1.8E-15 6.1E-20 119.8 9.6 79 191-270 12-101 (105)
118 2jwn_A Embryonic polyadenylate 99.6 2E-15 6.9E-20 122.7 10.0 78 193-272 35-118 (124)
119 1x4e_A RNA binding motif, sing 99.6 3.8E-16 1.3E-20 118.4 5.0 75 193-268 4-84 (85)
120 2j76_E EIF-4B, EIF4B, eukaryot 99.6 7.2E-16 2.4E-20 120.9 6.5 77 191-270 16-99 (100)
121 2e5g_A U6 snRNA-specific termi 99.6 5.1E-15 1.7E-19 114.6 11.3 79 192-272 6-85 (94)
122 3beg_B Splicing factor, argini 99.6 1.5E-15 5.1E-20 122.3 8.5 83 187-271 9-96 (115)
123 3n9u_C Cleavage and polyadenyl 99.6 1.8E-15 6.3E-20 128.6 9.4 76 193-269 54-137 (156)
124 1rk8_A CG8781-PA, CG8781-PA pr 99.6 2.9E-15 9.9E-20 128.2 10.4 82 191-273 69-156 (165)
125 2cpx_A Hypothetical protein FL 99.6 3.1E-15 1E-19 119.9 9.9 81 192-273 23-109 (115)
126 2e44_A Insulin-like growth fac 99.6 4.7E-15 1.6E-19 115.0 10.6 80 190-270 11-93 (96)
127 1fjc_A Nucleolin RBD2, protein 99.6 4.3E-15 1.5E-19 115.2 10.2 81 190-272 12-94 (96)
128 3pgw_A U1-A; protein-RNA compl 99.6 1.7E-14 5.9E-19 133.1 16.1 81 189-270 4-91 (282)
129 1wf0_A TDP-43, TAR DNA-binding 99.6 2E-15 6.9E-20 115.3 8.1 78 193-273 4-82 (88)
130 2e5i_A Heterogeneous nuclear r 99.6 5.3E-15 1.8E-19 120.8 11.0 78 193-271 24-104 (124)
131 3zzy_A Polypyrimidine tract-bi 99.6 7E-15 2.4E-19 120.8 11.7 80 192-272 26-109 (130)
132 2fc8_A NCL protein; structure 99.6 8.5E-15 2.9E-19 114.8 11.5 79 191-273 12-96 (102)
133 1wg5_A Heterogeneous nuclear r 99.6 6.8E-15 2.3E-19 116.2 10.9 80 190-271 11-96 (104)
134 1uaw_A Mouse-musashi-1; RNP-ty 99.6 7.4E-16 2.5E-20 114.4 4.9 70 195-266 1-76 (77)
135 1fj7_A Nucleolin RBD1, protein 99.6 1.1E-15 3.7E-20 119.8 6.1 78 192-272 15-98 (101)
136 2ki2_A SS-DNA binding protein 99.6 4.9E-16 1.7E-20 119.2 3.6 75 195-271 2-82 (90)
137 2mss_A Protein (musashi1); RNA 99.6 1.2E-15 4.2E-20 112.8 5.6 69 196-266 1-75 (75)
138 2ek1_A RNA-binding protein 12; 99.6 1.6E-15 5.6E-20 117.3 6.4 75 193-268 14-94 (95)
139 2db1_A Heterogeneous nuclear r 99.6 4.8E-15 1.7E-19 119.9 9.2 78 189-268 12-97 (118)
140 2hzc_A Splicing factor U2AF 65 99.6 6.4E-15 2.2E-19 111.9 9.2 72 192-265 4-86 (87)
141 2cpy_A RNA-binding protein 12; 99.6 6.4E-15 2.2E-19 118.3 9.3 75 192-268 13-93 (114)
142 3tyt_A Heterogeneous nuclear r 99.6 1.5E-14 5.2E-19 128.2 11.6 77 193-270 3-81 (205)
143 3q2s_C Cleavage and polyadenyl 99.6 3.9E-16 1.3E-20 140.9 0.7 76 193-269 67-150 (229)
144 3egn_A RNA-binding protein 40; 99.6 8.9E-15 3E-19 122.0 8.8 81 192-273 43-134 (143)
145 2krb_A Eukaryotic translation 99.6 3.4E-15 1.2E-19 112.3 5.5 68 195-263 2-80 (81)
146 2hgl_A HNRPF protein, heteroge 99.6 6.9E-15 2.4E-19 122.1 7.9 78 189-268 39-124 (136)
147 2xs2_A Deleted in azoospermia- 99.5 5E-15 1.7E-19 116.2 5.4 78 191-271 6-88 (102)
148 2dnn_A RNA-binding protein 12; 99.5 3.7E-14 1.3E-18 113.3 10.3 77 189-268 11-92 (109)
149 2diu_A KIAA0430 protein; struc 99.5 3.9E-14 1.3E-18 109.0 9.9 74 194-272 9-87 (96)
150 1wez_A HnRNP H', FTP-3, hetero 99.5 2.3E-14 7.8E-19 113.0 8.9 77 192-271 13-94 (102)
151 2lcw_A RNA-binding protein FUS 99.3 6.8E-16 2.3E-20 124.2 0.0 80 192-272 5-98 (116)
152 2lmi_A GRSF-1, G-rich sequence 99.5 7.1E-15 2.4E-19 116.7 5.4 76 191-268 8-91 (107)
153 1iqt_A AUF1, heterogeneous nuc 99.5 4.9E-15 1.7E-19 109.5 4.1 69 196-266 1-75 (75)
154 1fxl_A Paraneoplastic encephal 99.5 5.9E-14 2E-18 118.4 11.4 76 194-270 2-83 (167)
155 4f02_A Polyadenylate-binding p 99.5 2.6E-14 8.9E-19 127.0 9.5 75 194-269 103-181 (213)
156 4f02_A Polyadenylate-binding p 99.5 5.3E-14 1.8E-18 125.0 10.8 77 193-270 14-96 (213)
157 3md3_A Nuclear and cytoplasmic 99.5 8.1E-14 2.8E-18 117.5 11.3 77 191-268 84-166 (166)
158 1b7f_A Protein (SXL-lethal pro 99.5 7E-14 2.4E-18 118.4 10.8 78 193-271 2-85 (168)
159 2f3j_A RNA and export factor b 99.5 3.7E-14 1.3E-18 122.9 9.2 78 192-270 86-168 (177)
160 1wel_A RNA-binding protein 12; 99.5 1E-14 3.5E-19 118.8 5.0 76 191-268 22-103 (124)
161 3md3_A Nuclear and cytoplasmic 99.5 1.1E-13 3.8E-18 116.6 11.0 76 195-271 1-81 (166)
162 2yh0_A Splicing factor U2AF 65 99.5 1E-13 3.6E-18 120.6 11.0 79 192-271 112-196 (198)
163 2qfj_A FBP-interacting repress 99.5 1.1E-13 3.9E-18 122.0 10.1 77 193-270 124-206 (216)
164 3pgw_S U1-70K; protein-RNA com 99.5 1.6E-13 5.4E-18 135.1 11.5 78 193-271 101-184 (437)
165 2hgn_A Heterogeneous nuclear r 99.5 1.7E-14 5.9E-19 120.2 4.0 78 191-271 43-125 (139)
166 1l3k_A Heterogeneous nuclear r 99.5 1.4E-13 4.9E-18 119.5 10.0 80 189-270 8-93 (196)
167 3pgw_A U1-A; protein-RNA compl 99.5 1.8E-13 6.1E-18 126.3 11.0 76 191-267 204-281 (282)
168 2dnl_A Cytoplasmic polyadenyla 99.5 1.7E-13 5.7E-18 110.0 9.4 73 192-268 6-87 (114)
169 3sde_A Paraspeckle component 1 99.5 3.4E-13 1.2E-17 123.6 12.6 78 192-270 20-97 (261)
170 2cjk_A Nuclear polyadenylated 99.5 1E-13 3.4E-18 117.4 7.5 74 194-269 87-166 (167)
171 2adc_A Polypyrimidine tract-bi 99.4 2.4E-13 8.2E-18 122.1 10.1 78 192-270 32-111 (229)
172 3nmr_A Cugbp ELAV-like family 99.4 2E-13 6.8E-18 116.2 9.1 75 193-267 94-175 (175)
173 2g4b_A Splicing factor U2AF 65 99.4 1.8E-13 6.1E-18 116.4 8.7 74 193-267 93-172 (172)
174 1l3k_A Heterogeneous nuclear r 99.4 2.4E-13 8.2E-18 118.1 9.6 80 192-273 102-187 (196)
175 2hgm_A HNRPF protein, heteroge 99.4 1.6E-13 5.5E-18 112.3 7.2 74 192-268 40-120 (126)
176 2dit_A HIV TAT specific factor 99.4 2.2E-12 7.7E-17 103.0 13.7 79 192-271 13-104 (112)
177 2voo_A Lupus LA protein; RNA-b 99.4 3.3E-13 1.1E-17 118.5 9.6 76 193-270 108-188 (193)
178 1fje_B Nucleolin RBD12, protei 99.4 5.6E-13 1.9E-17 113.9 10.3 76 192-269 97-174 (175)
179 2adc_A Polypyrimidine tract-bi 99.4 4.4E-13 1.5E-17 120.4 10.0 76 193-269 150-228 (229)
180 2g4b_A Splicing factor U2AF 65 99.4 6.9E-13 2.4E-17 112.8 10.7 76 193-270 3-89 (172)
181 1qm9_A Polypyrimidine tract-bi 99.4 2.8E-13 9.7E-18 118.3 8.3 76 193-269 119-197 (198)
182 2dha_A FLJ20171 protein; RRM d 99.4 1.1E-13 3.8E-18 112.9 5.1 75 192-268 21-104 (123)
183 1qm9_A Polypyrimidine tract-bi 99.4 2.2E-13 7.4E-18 119.0 7.4 76 194-270 3-80 (198)
184 2pe8_A Splicing factor 45; RRM 99.4 1.2E-12 4.1E-17 103.7 10.7 75 193-268 7-93 (105)
185 2qfj_A FBP-interacting repress 99.4 5.7E-13 1.9E-17 117.5 9.7 77 193-270 27-109 (216)
186 1b7f_A Protein (SXL-lethal pro 99.4 9.2E-13 3.1E-17 111.4 9.9 74 192-266 87-168 (168)
187 2cjk_A Nuclear polyadenylated 99.4 5.1E-13 1.7E-17 113.0 7.9 74 193-269 2-81 (167)
188 2yh0_A Splicing factor U2AF 65 99.4 1.3E-12 4.4E-17 113.6 10.4 76 193-270 3-89 (198)
189 3smz_A Protein raver-1, ribonu 99.4 1.3E-12 4.6E-17 120.5 10.0 80 191-271 181-266 (284)
190 3nmr_A Cugbp ELAV-like family 99.4 9.8E-13 3.4E-17 111.9 8.2 79 193-271 2-90 (175)
191 1fxl_A Paraneoplastic encephal 99.4 1.4E-12 4.7E-17 110.0 8.6 73 193-266 87-167 (167)
192 2j8a_A Histone-lysine N-methyl 99.4 1E-12 3.5E-17 106.8 7.2 73 195-268 3-95 (136)
193 2d9o_A DNAJ (HSP40) homolog, s 99.4 7.5E-12 2.6E-16 98.2 11.6 67 204-273 27-94 (100)
194 2ghp_A U4/U6 snRNA-associated 99.3 2.9E-12 1E-16 118.6 10.4 76 192-269 208-291 (292)
195 3smz_A Protein raver-1, ribonu 99.3 5.1E-12 1.7E-16 116.6 11.8 75 193-269 21-95 (284)
196 3tht_A Alkylated DNA repair pr 99.3 3.5E-12 1.2E-16 121.3 10.4 77 191-267 15-97 (345)
197 1fje_B Nucleolin RBD12, protei 99.3 5.7E-12 1.9E-16 107.6 10.4 80 190-271 9-93 (175)
198 3tyt_A Heterogeneous nuclear r 99.3 5.6E-12 1.9E-16 111.6 8.1 72 194-266 123-204 (205)
199 3sde_A Paraspeckle component 1 99.3 5.9E-12 2E-16 115.2 8.3 77 194-270 96-180 (261)
200 2ghp_A U4/U6 snRNA-associated 99.3 1.4E-11 4.7E-16 114.1 10.4 79 193-272 116-200 (292)
201 3v4m_A Splicing factor U2AF 65 99.3 2.1E-11 7.3E-16 96.4 9.7 75 193-268 4-96 (105)
202 1jmt_A Splicing factor U2AF 35 99.3 3.2E-12 1.1E-16 101.0 4.7 67 199-266 20-103 (104)
203 3ue2_A Poly(U)-binding-splicin 99.2 6.4E-11 2.2E-15 95.7 9.4 74 194-268 20-108 (118)
204 3s6e_A RNA-binding protein 39; 99.2 8.4E-11 2.9E-15 94.4 8.1 74 194-268 7-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.1 5.6E-10 1.9E-14 85.1 9.8 72 194-269 7-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.0 8.3E-10 2.8E-14 89.2 9.1 74 193-266 17-93 (121)
207 1ufw_A Synaptojanin 2; RNP dom 98.8 9.6E-09 3.3E-13 78.6 8.2 76 185-268 10-94 (95)
208 3dxb_A Thioredoxin N-terminall 98.5 1.1E-07 3.6E-12 84.6 6.5 61 206-267 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.4 1.3E-06 4.4E-11 68.3 9.8 71 193-264 20-95 (117)
210 1wey_A Calcipressin 1; structu 97.7 0.00013 4.6E-09 56.6 7.8 75 194-269 5-84 (104)
211 2dhx_A Poly (ADP-ribose) polym 97.5 0.0013 4.3E-08 50.9 10.8 74 193-270 7-85 (104)
212 1wwh_A Nucleoporin 35, nucleop 97.3 0.00096 3.3E-08 53.1 8.8 74 191-267 21-95 (119)
213 2d9n_A Cleavage and polyadenyl 96.9 0.00037 1.3E-08 51.3 2.2 28 124-151 7-34 (77)
214 1uw4_A UPF3X; nonsense mediate 96.7 0.0066 2.3E-07 46.0 7.8 64 195-258 2-73 (91)
215 2rhk_C Cleavage and polyadenyl 96.7 0.0004 1.4E-08 50.5 0.9 27 125-151 14-40 (72)
216 1whv_A Poly(A)-specific ribonu 96.6 0.0097 3.3E-07 45.4 8.0 54 194-250 16-69 (100)
217 3p3d_A Nucleoporin 53; structu 96.5 0.0022 7.6E-08 51.8 4.0 73 193-268 6-98 (132)
218 3d2q_A Muscleblind-like protei 96.4 0.00069 2.4E-08 48.9 0.9 27 125-151 4-31 (70)
219 2cqe_A KIAA1064 protein; CCCH 96.3 0.0021 7.1E-08 49.6 2.7 24 126-149 12-35 (98)
220 3ctr_A Poly(A)-specific ribonu 96.0 0.0086 2.9E-07 45.9 5.1 53 195-250 7-59 (101)
221 3pq1_A Poly(A) RNA polymerase; 95.9 0.004 1.4E-07 61.0 3.6 54 194-248 53-107 (464)
222 3d2n_A Muscleblind-like protei 95.9 0.0034 1.2E-07 46.8 2.3 27 126-152 8-35 (83)
223 2e5s_A Otthump00000018578; ZF- 95.6 0.0013 4.4E-08 50.7 -1.2 28 124-151 17-45 (98)
224 3d2q_A Muscleblind-like protei 95.5 0.0029 1E-07 45.5 0.6 26 125-151 40-65 (70)
225 2l08_A Regulator of nonsense t 95.5 0.031 1.1E-06 42.7 6.2 73 194-266 9-93 (97)
226 2rpp_A Muscleblind-like protei 95.2 0.0044 1.5E-07 46.8 0.7 27 126-152 16-43 (89)
227 2rhk_C Cleavage and polyadenyl 95.0 0.0074 2.5E-07 43.7 1.5 26 126-152 43-69 (72)
228 2d9n_A Cleavage and polyadenyl 94.9 0.0086 2.9E-07 43.9 1.5 24 128-152 39-63 (77)
229 2e5s_A Otthump00000018578; ZF- 94.4 0.0077 2.6E-07 46.3 0.2 26 125-151 54-79 (98)
230 3d2n_A Muscleblind-like protei 94.2 0.012 4.1E-07 43.8 0.9 25 126-151 42-66 (83)
231 1m9o_A Tristetraproline; Cys3H 94.1 0.026 9E-07 41.0 2.7 26 126-151 11-37 (77)
232 2cqe_A KIAA1064 protein; CCCH 92.9 0.041 1.4E-06 42.2 2.0 25 127-151 36-61 (98)
233 2fc6_A Nuclear, target of EGR1 92.2 0.048 1.7E-06 35.9 1.2 26 126-151 19-45 (50)
234 2rpp_A Muscleblind-like protei 91.8 0.04 1.4E-06 41.5 0.6 26 125-151 49-74 (89)
235 1m9o_A Tristetraproline; Cys3H 91.6 0.034 1.1E-06 40.4 0.0 25 127-151 50-75 (77)
236 2kn4_A Immunoglobulin G-bindin 91.1 0.077 2.6E-06 43.5 1.7 23 230-252 13-35 (158)
237 2d9m_A Zinc finger CCCH-type d 90.4 0.071 2.4E-06 37.9 0.7 23 128-150 21-43 (69)
238 1z2q_A LM5-1; membrane protein 89.9 0.053 1.8E-06 40.3 -0.3 37 6-44 19-55 (84)
239 2yw8_A RUN and FYVE domain-con 89.9 0.075 2.6E-06 39.2 0.5 46 7-54 18-73 (82)
240 2i2y_A Fusion protein consists 89.3 0.086 2.9E-06 43.0 0.5 37 230-268 13-50 (150)
241 1y02_A CARP2, FYVE-ring finger 89.1 0.1 3.5E-06 41.5 0.8 58 7-69 18-79 (120)
242 1vfy_A Phosphatidylinositol-3- 88.0 0.076 2.6E-06 38.3 -0.6 33 8-42 11-43 (73)
243 3t7l_A Zinc finger FYVE domain 86.7 0.21 7.2E-06 37.5 1.2 37 6-44 18-54 (90)
244 1joc_A EEA1, early endosomal a 86.4 0.2 6.7E-06 40.1 0.9 37 6-44 67-103 (125)
245 1wfk_A Zinc finger, FYVE domai 85.5 0.15 5.1E-06 38.2 -0.2 35 7-43 8-42 (88)
246 3d45_A Poly(A)-specific ribonu 85.2 2.9 0.0001 41.2 9.0 54 194-250 440-493 (507)
247 1x4u_A Zinc finger, FYVE domai 83.2 0.24 8.1E-06 36.6 0.1 36 6-43 12-47 (84)
248 3zyq_A Hepatocyte growth facto 71.9 0.99 3.4E-05 39.7 0.6 33 8-42 164-196 (226)
249 3iot_A Maltose-binding protein 68.3 1 3.6E-05 43.1 0.0 7 241-247 274-280 (449)
250 2zet_C Melanophilin; complex, 63.5 2.2 7.6E-05 35.1 1.1 34 7-41 67-100 (153)
251 1zbd_B Rabphilin-3A; G protein 58.8 1.9 6.6E-05 34.7 -0.1 37 7-54 54-90 (134)
252 3u9g_A Zinc finger CCCH-type a 56.6 3.8 0.00013 35.8 1.4 26 127-152 89-118 (229)
253 3u9g_A Zinc finger CCCH-type a 51.4 4.9 0.00017 35.1 1.2 22 128-150 176-197 (229)
254 1dvp_A HRS, hepatocyte growth 51.3 4.5 0.00015 35.1 1.0 34 8-43 161-194 (220)
255 2g0c_A ATP-dependent RNA helic 41.9 52 0.0018 22.8 5.4 68 196-267 2-75 (76)
256 2m0e_A Zinc finger and BTB dom 41.1 9.5 0.00033 19.9 1.0 10 10-19 4-13 (29)
257 1znf_A 31ST zinc finger from X 40.6 9.2 0.00032 19.8 0.9 10 10-19 3-12 (27)
258 1klr_A Zinc finger Y-chromosom 39.7 10 0.00035 19.9 1.0 10 10-19 4-13 (30)
259 2csz_A Synaptotagmin-like prot 39.4 11 0.00037 27.1 1.3 37 6-53 23-59 (76)
260 1ard_A Yeast transcription fac 37.8 10 0.00035 19.8 0.8 10 10-19 4-13 (29)
261 2kvf_A Zinc finger and BTB dom 37.7 7.8 0.00027 20.4 0.2 10 10-19 5-14 (28)
262 2lvu_A Zinc finger and BTB dom 43.4 7.1 0.00024 20.2 0.0 11 10-20 4-14 (26)
263 1p7a_A BF3, BKLF, kruppel-like 35.6 12 0.00042 21.2 0.9 12 9-20 12-23 (37)
264 2elr_A Zinc finger protein 406 35.4 12 0.0004 21.1 0.8 11 9-19 10-20 (36)
265 3vk6_A E3 ubiquitin-protein li 33.8 15 0.00051 27.9 1.3 41 10-56 3-52 (101)
266 2ea5_A Cell growth regulator w 33.3 21 0.00073 24.5 2.0 47 5-56 12-58 (68)
267 3fry_A Probable copper-exporti 33.1 92 0.0031 20.7 5.5 56 194-250 6-61 (73)
268 2m0f_A Zinc finger and BTB dom 33.1 10 0.00034 19.8 0.2 10 10-19 4-13 (29)
269 2kvh_A Zinc finger and BTB dom 32.8 11 0.00036 19.7 0.3 10 10-19 5-14 (27)
270 1paa_A Yeast transcription fac 32.7 14 0.00048 19.5 0.8 10 10-19 4-13 (30)
271 1rim_A E6APC2 peptide; E6-bind 32.6 15 0.00052 20.5 1.0 10 10-19 4-13 (33)
272 1rik_A E6APC1 peptide; E6-bind 32.2 11 0.00038 19.8 0.3 10 10-19 4-13 (29)
273 1wil_A KIAA1045 protein; ring 31.8 15 0.00052 26.9 1.0 17 9-25 30-46 (89)
274 4a4j_A Pacszia, cation-transpo 31.4 83 0.0028 20.4 4.9 56 195-250 4-62 (69)
275 2lvt_A Zinc finger and BTB dom 37.3 10 0.00035 20.0 0.0 11 10-20 4-14 (29)
276 1srk_A Zinc finger protein ZFP 30.7 12 0.0004 20.9 0.2 12 9-20 8-19 (35)
277 3mpx_A FYVE, rhogef and PH dom 30.0 11 0.00038 35.8 0.0 33 7-51 374-406 (434)
278 2lvr_A Zinc finger and BTB dom 35.9 11 0.00038 19.9 0.0 11 10-20 5-15 (30)
279 2dip_A Zinc finger SWIM domain 29.5 18 0.00063 27.2 1.2 34 7-53 30-64 (98)
280 2elt_A Zinc finger protein 406 29.1 13 0.00045 20.8 0.3 11 9-19 10-20 (36)
281 2kfq_A FP1; protein, de novo p 28.9 15 0.00051 20.2 0.5 10 10-19 4-13 (32)
282 2kvg_A Zinc finger and BTB dom 28.9 8.8 0.0003 20.2 -0.6 10 10-19 5-14 (27)
283 2elx_A Zinc finger protein 406 27.9 14 0.00048 20.4 0.2 11 9-19 8-18 (35)
284 2elq_A Zinc finger protein 406 27.3 15 0.00051 20.7 0.3 10 10-19 11-20 (36)
285 2m0d_A Zinc finger and BTB dom 27.0 15 0.0005 19.3 0.2 10 10-19 5-14 (30)
286 2eos_A B-cell lymphoma 6 prote 24.3 26 0.00087 20.5 1.0 12 9-20 12-23 (42)
287 2elv_A Zinc finger protein 406 24.2 18 0.00062 20.3 0.2 10 10-19 11-20 (36)
288 2elm_A Zinc finger protein 406 24.2 20 0.0007 20.4 0.5 10 10-19 11-20 (37)
289 2yte_A Zinc finger protein 473 23.7 24 0.00084 20.5 0.8 12 9-20 11-22 (42)
290 2enf_A Zinc finger protein 347 23.7 25 0.00086 21.0 0.9 12 9-20 13-24 (46)
291 2en7_A Zinc finger protein 268 23.7 26 0.00087 20.6 0.9 12 9-20 13-24 (44)
292 2ecg_A Baculoviral IAP repeat- 23.6 43 0.0015 23.1 2.2 46 8-58 25-70 (75)
293 2elp_A Zinc finger protein 406 23.5 20 0.00068 20.2 0.3 11 9-19 10-20 (37)
294 2els_A Zinc finger protein 406 23.2 19 0.00064 20.2 0.2 10 10-19 11-20 (36)
295 1njq_A Superman protein; zinc- 22.9 19 0.00066 20.7 0.2 11 10-20 8-18 (39)
296 2fc7_A ZZZ3 protein; structure 22.4 41 0.0014 24.3 1.9 35 7-53 20-57 (82)
297 2yti_A Zinc finger protein 347 22.1 30 0.001 20.7 1.0 12 9-20 13-24 (46)
298 2elo_A Zinc finger protein 406 21.8 15 0.00053 20.7 -0.4 11 9-19 10-20 (37)
299 2eoh_A Zinc finger protein 28 21.5 31 0.0011 20.6 1.0 12 9-20 13-24 (46)
300 2eon_A ZFP-95, zinc finger pro 21.4 30 0.001 20.8 0.9 12 9-20 13-24 (46)
301 2xmw_A PACS-N, cation-transpor 21.3 1.6E+02 0.0055 18.5 5.7 56 195-250 5-63 (71)
302 2ep1_A Zinc finger protein 484 21.2 32 0.0011 20.5 1.0 12 9-20 13-24 (46)
303 2epc_A Zinc finger protein 32; 20.6 24 0.00081 20.5 0.2 12 9-20 12-23 (42)
304 2ytb_A Zinc finger protein 32; 20.3 33 0.0011 19.8 0.9 12 9-20 12-23 (42)
No 1
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.97 E-value=5.4e-31 Score=238.92 Aligned_cols=153 Identities=27% Similarity=0.508 Sum_probs=119.7
Q ss_pred HHHHhhhcCccc---ccCCccccccccCCcCCCCCCCCCCCCCCCCCccccc----cccccccCCCChHHHhhhhccCCC
Q 048750 111 TILKLQRTQPYY---KRNRAHVCSFYVRGECTRGAECPYRHEMPVTGELSQQ----NIKDRYYGVNDPVALKLLNKAGEM 183 (344)
Q Consensus 111 ~l~~lar~~py~---~~~~~~~C~ff~~G~C~rG~~Cpy~H~~p~~~~~~~~----~i~d~~~g~~~p~a~k~l~~~~~~ 183 (344)
..+.+.+++.|+ +++++++|+||+||+|.+|++|+|+|++|++.++..+ ++.|.| |+. +.+.....+
T Consensus 51 ~r~~~~~d~g~t~~~~~~~~~~C~ffakG~C~~G~~C~y~H~lPt~~d~~~~~~~~~~~D~f-Gr~-----k~~~~~d~~ 124 (240)
T 3u1l_A 51 FALQPQLHSGKTRGDNDGQLFFCLFFAKGMCCLGPKCEYLHHIPDEEDIGKLALRTEVLDCF-GRE-----KFADYREDM 124 (240)
T ss_dssp CCCCHHHHCBBCHHHHTTCCSBCHHHHTTCCSCGGGCSSBBSCCCHHHHHHHHHHCSSBCTT-SSB-----CGGGTC---
T ss_pred cccccccccccccCCcCCCCeEcCccccCCCCCCCCCCccCCCCCccchhhhcccccCcccc-cch-----hcccchhcc
Confidence 455666777776 4578899999999999999999999999998776543 344544 554 344444555
Q ss_pred CCCCCCCCCCccEEEeccCCCCC---------CHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCe
Q 048750 184 PSLEPPEDESIKTLYVGGVDARI---------TEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKL 254 (344)
Q Consensus 184 ~~~~~p~d~~~~tLfVgnL~~~~---------te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~ 254 (344)
+++++ .+...++||||||+..+ +|++|+++|++||+|.+|+|+.++|||||+|.++++|+.|+++|++.
T Consensus 125 ~g~gs-~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~- 202 (240)
T 3u1l_A 125 GGIGS-FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQ- 202 (240)
T ss_dssp -------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTC-
T ss_pred cCcCc-cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCC-
Confidence 55554 36789999999999988 79999999999999999999999999999999999999999999886
Q ss_pred EE------------CCeEEEEEEcCCCCC
Q 048750 255 VI------------KGLRLKLMWGKPQTQ 271 (344)
Q Consensus 255 ~i------------~g~~l~V~~ak~~~~ 271 (344)
.| +|+.|.|+||++...
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EEeccccccccccCCCCEEEEEEccCCCC
Confidence 55 899999999987543
No 2
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.6e-19 Score=140.61 Aligned_cols=83 Identities=14% Similarity=0.253 Sum_probs=76.2
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCC-CeEECCeEEEEEEcCCCC
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSN-KLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~-~~~i~g~~l~V~~ak~~~ 270 (344)
...++|||+|||++++|++|+++|++||+|.+|+|+.++|||||+|.+.++|+.|++.|++ +..++|+.|+|.|++++.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 4578999999999999999999999999999999999999999999999999999998864 468999999999999876
Q ss_pred CCCC
Q 048750 271 QRPE 274 (344)
Q Consensus 271 ~~~~ 274 (344)
.+..
T Consensus 94 ~~~~ 97 (105)
T 1sjq_A 94 LKTD 97 (105)
T ss_dssp CCCT
T ss_pred CCcc
Confidence 6553
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=136.42 Aligned_cols=74 Identities=30% Similarity=0.501 Sum_probs=69.6
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
.++|||+|||.++++++|+++|++||+|.+++|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+||+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng-~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG-LRLQSKTIKVSYAR 97 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCC-CEECCEEEEEEEee
Confidence 579999999999999999999999999999999875 57999999999999999999966 59999999999998
Q ss_pred C
Q 048750 268 P 268 (344)
Q Consensus 268 ~ 268 (344)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 7
No 4
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.7e-18 Score=132.93 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=75.8
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhC-CCeEECCeEEEEEEcCCC
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELS-NKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~-~~~~i~g~~l~V~~ak~~ 269 (344)
....++|||+|||.++++++|+++|++||.|.+|.|+.++|||||+|.+.++|+.|++.|+ ++..++|+.|+|.|++++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 3457899999999999999999999999999999999999999999999999999999874 356899999999999987
Q ss_pred CCCC
Q 048750 270 TQRP 273 (344)
Q Consensus 270 ~~~~ 273 (344)
..+.
T Consensus 92 ~~~~ 95 (101)
T 2cq1_A 92 ELKT 95 (101)
T ss_dssp SCCC
T ss_pred cCcC
Confidence 6654
No 5
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=129.39 Aligned_cols=81 Identities=47% Similarity=0.830 Sum_probs=74.8
Q ss_pred CCCCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 187 EPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 187 ~~p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
.++.+...++|||+|||.++++++|+++|++||.|.++++..++|||||+|.+.++|++|++.|+++..++|+.|+|+|+
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 34556778999999999999999999999999999999999999999999999999999999984557999999999998
Q ss_pred C
Q 048750 267 K 267 (344)
Q Consensus 267 k 267 (344)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 6
No 6
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=133.95 Aligned_cols=79 Identities=20% Similarity=0.419 Sum_probs=72.4
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCC-CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHG-EIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG-~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
+++|||+|||.+++|++|+++|++|| +|.+|+|+.+ +|||||+|.+.++|++|++.++++..++|+.|+|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999875 7999999999999999999887777899999999999
Q ss_pred CCCCCC
Q 048750 267 KPQTQR 272 (344)
Q Consensus 267 k~~~~~ 272 (344)
+++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 986543
No 7
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=132.81 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=75.0
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCC-CeEECCeEEEEEEcCCC
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSN-KLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~-~~~i~g~~l~V~~ak~~ 269 (344)
....++|||+|||.+++|++|+++|++||.|.+|.|+.++|||||+|.+.++|++|++.|++ ...++|+.|+|.|++++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 34578999999999999999999999999999999999999999999999999999998854 34699999999999986
Q ss_pred CCCC
Q 048750 270 TQRP 273 (344)
Q Consensus 270 ~~~~ 273 (344)
..+.
T Consensus 92 ~~~~ 95 (104)
T 1wex_A 92 RITR 95 (104)
T ss_dssp SCCC
T ss_pred cccC
Confidence 6543
No 8
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=9.1e-18 Score=132.70 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=72.8
Q ss_pred CccEEEeccCCC-CCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCC-CeEECCeEEEEEEcCCCC
Q 048750 193 SIKTLYVGGVDA-RITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSN-KLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 193 ~~~tLfVgnL~~-~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~-~~~i~g~~l~V~~ak~~~ 270 (344)
+.++|||+|||+ +++|++|+++|++||.|.+|.|+.+++||||+|.+.++|+.|++.|++ ...++|+.|+|.|++...
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 93 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCT
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCC
Confidence 478999999999 999999999999999999999999999999999999999999999864 357999999999999654
Q ss_pred C
Q 048750 271 Q 271 (344)
Q Consensus 271 ~ 271 (344)
.
T Consensus 94 ~ 94 (102)
T 1x4d_A 94 R 94 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 9
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=130.12 Aligned_cols=81 Identities=21% Similarity=0.426 Sum_probs=74.5
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEEC--CeEEEEEEcC
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIK--GLRLKLMWGK 267 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~--g~~l~V~~ak 267 (344)
.....++|||+|||.++++++|+++|++||.|.+|.+..+++||||+|.+.++|++|++.|++ ..++ |+.|+|+|++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRG-FPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTT-CBCSSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCC-CEeCCCCcEEEEEECC
Confidence 344578999999999999999999999999999999999999999999999999999999966 5888 9999999999
Q ss_pred CCCC
Q 048750 268 PQTQ 271 (344)
Q Consensus 268 ~~~~ 271 (344)
++..
T Consensus 92 ~~~~ 95 (97)
T 1why_A 92 SGPS 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 10
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=130.69 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=72.6
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCC-eEECCeEEEEEEcCCCC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNK-LVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~-~~i~g~~l~V~~ak~~~ 270 (344)
+.++|||+|||.++++++|+++|++||.|.++++++.||+|||+|.+.++|+.|++.|++. +.++|++|+|.|++++.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 4789999999999999999999999999999999999999999999999999999999654 35899999999998754
No 11
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.3e-18 Score=136.81 Aligned_cols=84 Identities=14% Similarity=0.252 Sum_probs=76.2
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCC-CeEECCeEEEEEEcCCCC
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSN-KLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~-~~~i~g~~l~V~~ak~~~ 270 (344)
.+.++|||+|||++++|++|+++|++||.|.+|+|+.++|||||+|.+.++|++|++.+++ +..++|+.|+|.|++++.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 3478999999999999999999999999999999999999999999999999999998864 358999999999999877
Q ss_pred CCCCC
Q 048750 271 QRPEG 275 (344)
Q Consensus 271 ~~~~~ 275 (344)
.+...
T Consensus 109 ~~~~~ 113 (119)
T 2ad9_A 109 LKTDS 113 (119)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 66543
No 12
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.6e-17 Score=127.29 Aligned_cols=84 Identities=25% Similarity=0.414 Sum_probs=76.4
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
..+...++|||+|||.++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.|++ ..++|+.|+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 88 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG-TVVEGRKIEVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCC-CEECCEEEEEE
Confidence 34566899999999999999999999999999999999987 78999999999999999999966 58999999999
Q ss_pred EcCCCCCCC
Q 048750 265 WGKPQTQRP 273 (344)
Q Consensus 265 ~ak~~~~~~ 273 (344)
|++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cq3_A 89 NATARVMTN 97 (103)
T ss_dssp ECCSSCCCC
T ss_pred EcccCCCCC
Confidence 999876554
No 13
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.4e-17 Score=127.37 Aligned_cols=84 Identities=25% Similarity=0.417 Sum_probs=76.1
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
..+...++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~ 88 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG-RKILGKEVKVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTT-EEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCC-CCcCCCeEEEE
Confidence 34566899999999999999999999999999999999985 78999999999999999999965 68999999999
Q ss_pred EcCCCCCCC
Q 048750 265 WGKPQTQRP 273 (344)
Q Consensus 265 ~ak~~~~~~ 273 (344)
|+++...+.
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqi_A 89 WATTPSSQK 97 (103)
T ss_dssp ECCCTTCCC
T ss_pred ECCCCcccc
Confidence 999866544
No 14
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=130.39 Aligned_cols=80 Identities=15% Similarity=0.293 Sum_probs=71.7
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCC--eeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCC---eEEC
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGE--IESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNK---LVIK 257 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~--I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~---~~i~ 257 (344)
.......||||+|||+++|+++|+++|++||. |.+|+++.+ +|||||+|.+.++|++|++.|++. +.++
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 34566889999999999999999999999995 678998875 789999999999999999999764 4799
Q ss_pred CeEEEEEEcCC
Q 048750 258 GLRLKLMWGKP 268 (344)
Q Consensus 258 g~~l~V~~ak~ 268 (344)
|+.|+|+||++
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999985
No 15
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.73 E-value=1.5e-17 Score=134.07 Aligned_cols=78 Identities=27% Similarity=0.459 Sum_probs=71.6
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
.++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.|++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~-~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG-MLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTT-CEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCC-CEECCEEEEEEECCCc
Confidence 578999999999999999999999999999999876 68999999999999999999966 5999999999999886
Q ss_pred CCC
Q 048750 270 TQR 272 (344)
Q Consensus 270 ~~~ 272 (344)
..+
T Consensus 84 ~~~ 86 (115)
T 4f25_A 84 KER 86 (115)
T ss_dssp CC-
T ss_pred ccc
Confidence 544
No 16
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.3e-17 Score=129.76 Aligned_cols=85 Identities=22% Similarity=0.515 Sum_probs=76.9
Q ss_pred CCCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHHh-CCCeEECCe
Q 048750 188 PPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-------KAFAFVTYTTREGAEKAAEEL-SNKLVIKGL 259 (344)
Q Consensus 188 ~p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-------kg~aFV~F~~~~~A~~A~~~l-~~~~~i~g~ 259 (344)
++.+...++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.| ++ ..++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~-~~~~g~ 87 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHS-THLYGR 87 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTC-CBSSSC
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccC-CeECCC
Confidence 345667899999999999999999999999999999999876 799999999999999999999 55 589999
Q ss_pred EEEEEEcCCCCCCC
Q 048750 260 RLKLMWGKPQTQRP 273 (344)
Q Consensus 260 ~l~V~~ak~~~~~~ 273 (344)
.|+|+|++++....
T Consensus 88 ~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 88 RLVLEWADSEVTVQ 101 (107)
T ss_dssp BCEEEECCCCCCCC
T ss_pred EEEEEeCCCCCCCC
Confidence 99999999876544
No 17
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.9e-17 Score=130.12 Aligned_cols=81 Identities=31% Similarity=0.593 Sum_probs=75.3
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCCC
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQ 271 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~~ 271 (344)
...++|||+|||.++++++|+++|++||.|.+|+|+.++|||||+|.+.++|++|++.|++ ..++|+.|+|.|++++..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG-TTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTT-CEETTEECEEECCCCCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCC-CEECCcEEEEEecCCCCC
Confidence 4578999999999999999999999999999999999999999999999999999999966 599999999999998765
Q ss_pred CC
Q 048750 272 RP 273 (344)
Q Consensus 272 ~~ 273 (344)
..
T Consensus 102 ~~ 103 (109)
T 1x4g_A 102 MT 103 (109)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 18
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-16 Score=127.46 Aligned_cols=84 Identities=19% Similarity=0.306 Sum_probs=76.0
Q ss_pred CCCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECC-----eEEE
Q 048750 188 PPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKG-----LRLK 262 (344)
Q Consensus 188 ~p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g-----~~l~ 262 (344)
+|.....++|||+|||.++++++|+++|++||+|.+|.|+.+ |||||+|.+.++|++|++.|++ ..++| +.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDN-TKFRSHEGETAYIR 86 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSS-EEEECTTSCEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCc-CCccCCcCcceEEE
Confidence 344567899999999999999999999999999999999988 9999999999999999999965 68999 9999
Q ss_pred EEEcCCCCCCC
Q 048750 263 LMWGKPQTQRP 273 (344)
Q Consensus 263 V~~ak~~~~~~ 273 (344)
|+|++++....
T Consensus 87 V~~a~~~~~~~ 97 (108)
T 1x4c_A 87 VKVDGPRSPSY 97 (108)
T ss_dssp EEESSCCSCCC
T ss_pred EEeCCCCCCCC
Confidence 99999866543
No 19
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.4e-17 Score=127.49 Aligned_cols=82 Identities=28% Similarity=0.440 Sum_probs=75.3
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCC
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~ 270 (344)
....++|||+|||.++++++|+++|++||.|.+|++..++|||||+|.+.++|++|++.|++ ..++|+.|+|.|++++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g-~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDN-MPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTT-CCBTTBCCEEEESSCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCC-CEeCCceEEEEEcCCCC
Confidence 34578999999999999999999999999999999999999999999999999999999966 58999999999999865
Q ss_pred CCC
Q 048750 271 QRP 273 (344)
Q Consensus 271 ~~~ 273 (344)
...
T Consensus 91 ~~~ 93 (99)
T 2cpj_A 91 SLT 93 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 20
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.8e-17 Score=130.13 Aligned_cols=77 Identities=32% Similarity=0.502 Sum_probs=72.5
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
...++|||+||+.++++++|+++|++||.|.++++...+|||||+|.+.++|++|++.|++ ..++|+.|+|.|++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALAN-FPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTT-CEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEEeccCC
Confidence 3478999999999999999999999999999999999999999999999999999999966 5999999999999874
No 21
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.3e-17 Score=124.77 Aligned_cols=80 Identities=21% Similarity=0.419 Sum_probs=73.5
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCC
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~ 270 (344)
+...++|||+|||.++++++|+++|++||.|.++.+. ++||||+|.+.++|++|++.|++ ..++|+.|+|+|++++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHH-YKLHGVNINVEASKNKS 81 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTT-CBCSSCBCEEECSSCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcC-CccCCcEEEEEECCCCC
Confidence 4568999999999999999999999999999999998 89999999999999999999966 58999999999999876
Q ss_pred CCC
Q 048750 271 QRP 273 (344)
Q Consensus 271 ~~~ 273 (344)
...
T Consensus 82 ~~~ 84 (90)
T 2dnq_A 82 KAS 84 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 22
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=3.9e-17 Score=124.54 Aligned_cols=74 Identities=27% Similarity=0.281 Sum_probs=70.4
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
....|||+||+..++|++|+++|.+||+|.++++..++|||||+|.++++|++|++.|++ ..+.|+.|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~-~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNN-CVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTT-EEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcC-CEECCcEEEEEECC
Confidence 367999999999999999999999999999999999999999999999999999999965 69999999999983
No 23
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-16 Score=127.28 Aligned_cols=84 Identities=26% Similarity=0.464 Sum_probs=75.8
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ---KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~---kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
+.+...++|||+|||.++++++|+++|++||.|.+|.|..+ ++||||+|.+.++|++|++.|++ ..++|+.|+|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V~~ 95 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG-YDYDGYRLRVEF 95 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTT-CEETTEECEEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCC-CEECCeEEEEEE
Confidence 44567899999999999999999999999999999999875 67999999999999999999966 599999999999
Q ss_pred cCCCCCCC
Q 048750 266 GKPQTQRP 273 (344)
Q Consensus 266 ak~~~~~~ 273 (344)
+++.....
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4a_A 96 PRSGRGTG 103 (109)
T ss_dssp CCCCCCCC
T ss_pred cccCCCCC
Confidence 99876543
No 24
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7.6e-17 Score=126.26 Aligned_cols=83 Identities=19% Similarity=0.376 Sum_probs=74.8
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
......++|||+|||.++++++|+++|++||.|.+|+|..+ +|||||+|.+.++|++|++.|++ ..++|+.|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDG-MTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT-EESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCC-CEECCEEEEE
Confidence 34456789999999999999999999999999999999886 48999999999999999999966 6999999999
Q ss_pred EEcCCCCCC
Q 048750 264 MWGKPQTQR 272 (344)
Q Consensus 264 ~~ak~~~~~ 272 (344)
.|++++..+
T Consensus 91 ~~a~~~~~~ 99 (100)
T 2do4_A 91 AISNSGPSS 99 (100)
T ss_dssp EECCCCSCC
T ss_pred EECCCCCCC
Confidence 999986643
No 25
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8e-17 Score=125.46 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=73.5
Q ss_pred CCccEEEeccCCCCCCHHHHH----HHhhcCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLR----DNFYAHGEIESIKMHPQ---KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~----~~F~~fG~I~~v~i~~~---kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
...++|||+|||.++++++|+ ++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.|++ ..++|+.|+|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g-~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHR-YKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTT-EEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEE
Confidence 346899999999999999999 99999999999999977 89999999999999999999965 69999999999
Q ss_pred EcCCCCCC
Q 048750 265 WGKPQTQR 272 (344)
Q Consensus 265 ~ak~~~~~ 272 (344)
|+++...+
T Consensus 86 ~a~~~~~~ 93 (96)
T 2dgx_A 86 LATGASGP 93 (96)
T ss_dssp ECCCSSCC
T ss_pred EcCCCCCC
Confidence 99886543
No 26
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.71 E-value=9.9e-17 Score=128.82 Aligned_cols=84 Identities=20% Similarity=0.476 Sum_probs=75.8
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
.+....++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~ 88 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG-QWLGGRQIR 88 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT-CEETTEECE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCEEEE
Confidence 34556899999999999999999999999999999999876 58999999999999999999966 589999999
Q ss_pred EEEcCCCCCCC
Q 048750 263 LMWGKPQTQRP 273 (344)
Q Consensus 263 V~~ak~~~~~~ 273 (344)
|.|++++....
T Consensus 89 V~~a~~~~~~~ 99 (115)
T 2dgo_A 89 TNWATRKPPAP 99 (115)
T ss_dssp EEESSCCCCCS
T ss_pred EEEccCCCCCC
Confidence 99999876543
No 27
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-16 Score=122.75 Aligned_cols=82 Identities=24% Similarity=0.375 Sum_probs=74.0
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCC
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKP 268 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~ 268 (344)
+.....++|||+|||.++++++|+++|++||.|.++.+. ++||||+|.+.++|++|++.|++ ..++|+.|+|+|+++
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDN-TEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTT-EEETTEEEEEEESSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCC-CeeCCcEEEEEEccC
Confidence 345668999999999999999999999999999999998 56999999999999999999965 699999999999998
Q ss_pred CCCCC
Q 048750 269 QTQRP 273 (344)
Q Consensus 269 ~~~~~ 273 (344)
+....
T Consensus 82 ~~~~~ 86 (92)
T 2dgt_A 82 RLRTA 86 (92)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 76543
No 28
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=9.6e-17 Score=125.43 Aligned_cols=82 Identities=20% Similarity=0.459 Sum_probs=74.2
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
.+...++|||+|||.++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++ |++ ..++|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~-~~~~g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHF-HDIMGKKVEV 83 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCC-CBSSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCC-CEECCeEEEE
Confidence 4456899999999999999999999999999999999875 7899999999999999998 855 6999999999
Q ss_pred EEcCCCCCCC
Q 048750 264 MWGKPQTQRP 273 (344)
Q Consensus 264 ~~ak~~~~~~ 273 (344)
.|++++..+.
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2dgs_A 84 KRAEPRDSKS 93 (99)
T ss_dssp EECCCCCCCC
T ss_pred EECCCCcccC
Confidence 9999876554
No 29
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.5e-17 Score=126.73 Aligned_cols=84 Identities=21% Similarity=0.410 Sum_probs=75.8
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
++....++|||+|||.++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~ 88 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDM-IKLYGKPIR 88 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSS-CBCSSCBCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCC-CeECCeEEE
Confidence 34566899999999999999999999999999999999885 58999999999999999999966 589999999
Q ss_pred EEEcCCCCCCC
Q 048750 263 LMWGKPQTQRP 273 (344)
Q Consensus 263 V~~ak~~~~~~ 273 (344)
|.|++++....
T Consensus 89 v~~a~~~~~~~ 99 (105)
T 1x5u_A 89 VNKASAHNKNL 99 (105)
T ss_dssp EEETTTTSCCC
T ss_pred EEECCCCCcCC
Confidence 99999876543
No 30
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=124.70 Aligned_cols=82 Identities=27% Similarity=0.361 Sum_probs=74.4
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
....++|||+|||.++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG-QVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTT-EESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCC-CEECCcEEEEE
Confidence 345789999999999999999999999999999999876 59999999999999999999965 69999999999
Q ss_pred EcCCCCCCC
Q 048750 265 WGKPQTQRP 273 (344)
Q Consensus 265 ~ak~~~~~~ 273 (344)
|++++....
T Consensus 84 ~a~~~~~~~ 92 (99)
T 1whw_A 84 PSTIKKEAS 92 (99)
T ss_dssp ECCCCSTTC
T ss_pred EcCCCcccc
Confidence 999876543
No 31
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-16 Score=126.82 Aligned_cols=85 Identities=20% Similarity=0.315 Sum_probs=75.8
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCC-----CeEEC
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSN-----KLVIK 257 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~-----~~~i~ 257 (344)
+.....++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|+. +..++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34456889999999999999999999999999999999864 78999999999999999999961 57999
Q ss_pred CeEEEEEEcCCCCCCC
Q 048750 258 GLRLKLMWGKPQTQRP 273 (344)
Q Consensus 258 g~~l~V~~ak~~~~~~ 273 (344)
|+.|+|.|++++....
T Consensus 90 g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SCEEEEECCCCCCCCC
T ss_pred CEEEEEEECCCCccCC
Confidence 9999999999876544
No 32
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=6.5e-17 Score=121.99 Aligned_cols=75 Identities=20% Similarity=0.454 Sum_probs=70.2
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCC
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKP 268 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~ 268 (344)
.+|||+|||.++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g-~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG-QDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT-CEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcC-CeeCCcEEEEEecCc
Confidence 58999999999999999999999999999999876 78999999999999999999966 589999999999998
Q ss_pred CC
Q 048750 269 QT 270 (344)
Q Consensus 269 ~~ 270 (344)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 33
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.71 E-value=1.4e-16 Score=125.60 Aligned_cols=80 Identities=30% Similarity=0.569 Sum_probs=73.2
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCC
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~ 270 (344)
....++|||+|||.++++++|+++|++||.|.+|.++ ++||||+|.+.++|++|++.|++ ..++|+.|+|.|++++.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNG-KDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTT-EEETTEEEEEEECCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCC-CccCCCEEEEEEcCCCc
Confidence 4557899999999999999999999999999999998 67999999999999999999966 69999999999999876
Q ss_pred CCC
Q 048750 271 QRP 273 (344)
Q Consensus 271 ~~~ 273 (344)
.+.
T Consensus 85 ~~~ 87 (103)
T 2dgu_A 85 QKR 87 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 554
No 34
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.6e-17 Score=132.08 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=72.9
Q ss_pred CccEEEeccCCCC-CCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCC-CeEECCeEEEEEEcCCCC
Q 048750 193 SIKTLYVGGVDAR-ITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSN-KLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 193 ~~~tLfVgnL~~~-~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~-~~~i~g~~l~V~~ak~~~ 270 (344)
..++|||+|||++ +++++|+++|++||.|.+|.|+..+|||||+|.+.++|+.|++.|++ ...++|+.|+|.|++.+.
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYK 103 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCS
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccc
Confidence 4789999999998 99999999999999999999999999999999999999999998853 357899999999998755
Q ss_pred CC
Q 048750 271 QR 272 (344)
Q Consensus 271 ~~ 272 (344)
..
T Consensus 104 ~~ 105 (112)
T 1x4f_A 104 KL 105 (112)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 35
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-16 Score=123.10 Aligned_cols=77 Identities=21% Similarity=0.327 Sum_probs=71.0
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
.....++|||+|||.++++++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++.|++ ..++|+.|+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v 90 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN-KQLFGRVIKA 90 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTT-EEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCC-CeeCCcEEEE
Confidence 3456789999999999999999999999999999999875 68999999999999999999965 6999999999
Q ss_pred EEcC
Q 048750 264 MWGK 267 (344)
Q Consensus 264 ~~ak 267 (344)
+|++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9986
No 36
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-16 Score=125.39 Aligned_cols=82 Identities=29% Similarity=0.486 Sum_probs=74.6
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
....++|||+|||.++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG-FGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTT-CEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCC-CeeCCcEEEEE
Confidence 456799999999999999999999999999999999876 57999999999999999999966 58999999999
Q ss_pred EcCCCCCCC
Q 048750 265 WGKPQTQRP 273 (344)
Q Consensus 265 ~ak~~~~~~ 273 (344)
|++++..+.
T Consensus 91 ~a~~~~~~~ 99 (103)
T 2cq0_A 91 WAKPSTNSG 99 (103)
T ss_dssp ESSCCCCSC
T ss_pred ECCCCCCCC
Confidence 999876543
No 37
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.1e-17 Score=127.09 Aligned_cols=85 Identities=21% Similarity=0.377 Sum_probs=76.1
Q ss_pred CCCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEE
Q 048750 188 PPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRL 261 (344)
Q Consensus 188 ~p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l 261 (344)
++.....++|||+|||.++++++|+++|++||.|.+|.|..+ +|||||+|.+.++|++|++.|++ ..++|+.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l 85 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG-AELDGREL 85 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSS-CCBTTBCC
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCC-CEECCcEE
Confidence 345566899999999999999999999999999999999875 68999999999999999999966 58999999
Q ss_pred EEEEcCCCCCCC
Q 048750 262 KLMWGKPQTQRP 273 (344)
Q Consensus 262 ~V~~ak~~~~~~ 273 (344)
+|.|+++.....
T Consensus 86 ~V~~a~~~~~~~ 97 (103)
T 2dnm_A 86 RVQVARYGRRDL 97 (103)
T ss_dssp EEEECSSCCSCC
T ss_pred EEEECCcCCCCC
Confidence 999999865543
No 38
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.5e-17 Score=126.38 Aligned_cols=83 Identities=28% Similarity=0.455 Sum_probs=75.4
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
+...++|||+|||.++++++|+++|++||.|.+|.|+.+ ++||||+|.+.++|++|++.|++ ..++|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG-RIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTT-CBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCC-CEeCCcEEEEEEe
Confidence 456889999999999999999999999999999999965 78999999999999999999966 5899999999999
Q ss_pred CCCCCCCC
Q 048750 267 KPQTQRPE 274 (344)
Q Consensus 267 k~~~~~~~ 274 (344)
+++..+..
T Consensus 91 ~~~~~~~~ 98 (103)
T 2d9p_A 91 QRKEERQS 98 (103)
T ss_dssp SSCCCCCC
T ss_pred cccccCCC
Confidence 98765543
No 39
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.2e-17 Score=126.04 Aligned_cols=82 Identities=24% Similarity=0.431 Sum_probs=71.7
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCC-eeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGE-IESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~-I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
+...++|||+|||.++++++|+++|++||. |..+.+ ..+|||||+|.+.++|++|++.|++...++|+.|+|+|++++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 345789999999999999999999999999 555555 568999999999999999999996636999999999999987
Q ss_pred CCCC
Q 048750 270 TQRP 273 (344)
Q Consensus 270 ~~~~ 273 (344)
..+.
T Consensus 84 ~~~~ 87 (93)
T 2cqh_A 84 KLRS 87 (93)
T ss_dssp CCCC
T ss_pred cccC
Confidence 6543
No 40
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.70 E-value=1.2e-16 Score=126.18 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=73.7
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECC---eEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKG---LRLKL 263 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g---~~l~V 263 (344)
...++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++. .+.| +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS-QTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSC-CCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCC-ccCCCCCccEEE
Confidence 45789999999999999999999999999999999987 789999999999999999999775 6666 99999
Q ss_pred EEcCCCCCCC
Q 048750 264 MWGKPQTQRP 273 (344)
Q Consensus 264 ~~ak~~~~~~ 273 (344)
.|++++..+.
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999876654
No 41
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.70 E-value=7e-17 Score=122.92 Aligned_cols=76 Identities=21% Similarity=0.447 Sum_probs=69.3
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
+.++|||+|||.++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG-QWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC-CEECCeEEEEEec
Confidence 4689999999999999999999999999999999876 58999999999999999999966 5999999999999
Q ss_pred CCC
Q 048750 267 KPQ 269 (344)
Q Consensus 267 k~~ 269 (344)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 42
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=125.27 Aligned_cols=82 Identities=24% Similarity=0.499 Sum_probs=74.8
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
.+.++|||+|||.++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V~~ 88 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE-SELFGRTIRVNL 88 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTT-EEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCcEEEEEe
Confidence 45789999999999999999999999999999999775 78999999999999999999965 699999999999
Q ss_pred cCCCCCCCC
Q 048750 266 GKPQTQRPE 274 (344)
Q Consensus 266 ak~~~~~~~ 274 (344)
++++..+..
T Consensus 89 a~~~~~~~~ 97 (102)
T 2cqb_A 89 AKPMRIKES 97 (102)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 998766543
No 43
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=124.42 Aligned_cols=81 Identities=20% Similarity=0.396 Sum_probs=74.0
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEE-EEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESI-KMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v-~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
..++|||+|||.++++++|+++|++||.|.++ +|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG-QYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTT-CEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCC-CEECCEEEEEEE
Confidence 47899999999999999999999999999999 88875 78999999999999999999966 589999999999
Q ss_pred cCCCCCCCC
Q 048750 266 GKPQTQRPE 274 (344)
Q Consensus 266 ak~~~~~~~ 274 (344)
++++..+..
T Consensus 83 a~~~~~~~~ 91 (96)
T 1x5t_A 83 AFKKDSKGS 91 (96)
T ss_dssp SCCCCCCCC
T ss_pred ecccCCCCC
Confidence 998776543
No 44
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=128.36 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=70.2
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
+.++|||+||+.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.|+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng-~~~~gr~i~V~~a 83 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHL-TSVMGNIIHAQLD 83 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEEEC
Confidence 4689999999999999999999999999999999875 68999999999999999999966 5999999999998
Q ss_pred CCC
Q 048750 267 KPQ 269 (344)
Q Consensus 267 k~~ 269 (344)
+..
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 753
No 45
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.69 E-value=1.2e-16 Score=121.15 Aligned_cols=75 Identities=25% Similarity=0.515 Sum_probs=69.7
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
.+.++|||+|||.++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE-SELFGRTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCC-CEECCcEEEEEE
Confidence 45789999999999999999999999999999999764 89999999999999999999966 599999999999
Q ss_pred cC
Q 048750 266 GK 267 (344)
Q Consensus 266 ak 267 (344)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 46
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=1.1e-16 Score=127.73 Aligned_cols=80 Identities=26% Similarity=0.425 Sum_probs=72.4
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
.+...++|||+||+.++++++|+++|++||.|.++.+. +|||||+|.+.++|++|++.|++ ..++|+.|+|.|++++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHG-KSFANQPLEVVYSKLP 103 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTT-CEETTEECEEESCSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCC-CEECCeEEEEEEecCC
Confidence 34567999999999999999999999999999999999 89999999999999999999966 5899999999999987
Q ss_pred CCC
Q 048750 270 TQR 272 (344)
Q Consensus 270 ~~~ 272 (344)
..+
T Consensus 104 ~~r 106 (108)
T 2jvo_A 104 AKR 106 (108)
T ss_dssp C--
T ss_pred CCC
Confidence 654
No 47
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.69 E-value=1.7e-16 Score=127.52 Aligned_cols=82 Identities=23% Similarity=0.360 Sum_probs=74.3
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
+...++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~ 100 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG-FQIGMKRLKVQ 100 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCC-CEECCEEEEEE
Confidence 445789999999999999999999999999999999876 47999999999999999999966 59999999999
Q ss_pred EcCCCCCCC
Q 048750 265 WGKPQTQRP 273 (344)
Q Consensus 265 ~ak~~~~~~ 273 (344)
|++++....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpz_A 101 LKRSKNDSK 109 (115)
T ss_dssp CCCCSCCCC
T ss_pred EcCCCCcCC
Confidence 999876543
No 48
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9e-17 Score=128.25 Aligned_cols=81 Identities=26% Similarity=0.436 Sum_probs=74.2
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
..+...++|||+||+.++++++|+++|++||.|.++++..+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~ 102 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG-TVVEGRKIEVN 102 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTT-CEETTEECEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCC-CEECCEEEEEE
Confidence 34566899999999999999999999999999999999876 79999999999999999999966 58999999999
Q ss_pred EcCCCC
Q 048750 265 WGKPQT 270 (344)
Q Consensus 265 ~ak~~~ 270 (344)
|++++.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998753
No 49
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=8.9e-17 Score=123.72 Aligned_cols=81 Identities=16% Similarity=0.278 Sum_probs=73.8
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
+...++|||+|||.++++++|+++|++||.|.++.|..+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g-~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG-MKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTT-CCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCcEEEEEEc
Confidence 456789999999999999999999999999999999874 68999999999999999999966 5899999999999
Q ss_pred CCCCCC
Q 048750 267 KPQTQR 272 (344)
Q Consensus 267 k~~~~~ 272 (344)
++....
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 986543
No 50
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.69 E-value=1.7e-16 Score=123.35 Aligned_cols=76 Identities=21% Similarity=0.336 Sum_probs=71.2
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
.++|||+|||.++++++|+++|++||.|.+++|..+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+|++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNG-YQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEEEcC
Confidence 579999999999999999999999999999999876 78999999999999999999966 59999999999999
Q ss_pred CCC
Q 048750 268 PQT 270 (344)
Q Consensus 268 ~~~ 270 (344)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 854
No 51
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-16 Score=126.14 Aligned_cols=82 Identities=24% Similarity=0.464 Sum_probs=74.0
Q ss_pred CCCCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeE
Q 048750 187 EPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLR 260 (344)
Q Consensus 187 ~~p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~ 260 (344)
.+..+...++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.++ + .++|+.
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~-~-~~~g~~ 87 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-P-IIDGRK 87 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS-C-EETTEE
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC-C-cCCCEE
Confidence 3445677899999999999999999999999999999999885 6899999999999999999885 4 899999
Q ss_pred EEEEEcCCCC
Q 048750 261 LKLMWGKPQT 270 (344)
Q Consensus 261 l~V~~ak~~~ 270 (344)
|+|+|+++..
T Consensus 88 l~V~~a~~~~ 97 (116)
T 2cqd_A 88 ANVNLAYLGA 97 (116)
T ss_dssp CEEEESTTTC
T ss_pred EEEEEcccCC
Confidence 9999998654
No 52
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.1e-16 Score=122.38 Aligned_cols=80 Identities=28% Similarity=0.455 Sum_probs=73.5
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
..++|||+|||.++++++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG-FELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTT-CCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCC-CeeCCcEEEEEEc
Confidence 4789999999999999999999999999999999886 67999999999999999999966 5899999999999
Q ss_pred CCCCCCC
Q 048750 267 KPQTQRP 273 (344)
Q Consensus 267 k~~~~~~ 273 (344)
+++....
T Consensus 83 ~~~~~~~ 89 (95)
T 2dnz_A 83 TERLDGG 89 (95)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 9876544
No 53
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=120.63 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=71.3
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeC-------CCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHP-------QKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~-------~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
..++|||+|||.++++++|+++|++||.|.++.+.. .+|||||+|.+.++|++|++.|++ ..++|+.|+|+|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDG-GQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCC-CeECCeEEEEEE
Confidence 367999999999999999999999999999999865 478999999999999999999966 599999999999
Q ss_pred cCCCCC
Q 048750 266 GKPQTQ 271 (344)
Q Consensus 266 ak~~~~ 271 (344)
+++...
T Consensus 82 a~~~~~ 87 (88)
T 4a8x_A 82 VLAPWP 87 (88)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 987653
No 54
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.69 E-value=1.5e-16 Score=126.74 Aligned_cols=83 Identities=24% Similarity=0.414 Sum_probs=74.8
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
+.....++|||+|||.++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~ 99 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG-AEIMGQTIQ 99 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTT-CEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC-CEECCcEEE
Confidence 34456789999999999999999999999999999999875 69999999999999999999966 599999999
Q ss_pred EEEcCCCCCC
Q 048750 263 LMWGKPQTQR 272 (344)
Q Consensus 263 V~~ak~~~~~ 272 (344)
|.|++++..+
T Consensus 100 V~~a~~~~~~ 109 (110)
T 1oo0_B 100 VDWCFVKGPK 109 (110)
T ss_dssp EEESEESSCC
T ss_pred EEEcccCCCC
Confidence 9999886543
No 55
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.6e-16 Score=120.89 Aligned_cols=80 Identities=25% Similarity=0.397 Sum_probs=72.9
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCC
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~ 270 (344)
+...++|||+|||.++++++|+++|++||.|.++.+. ++||||+|.+.++|++|++.|++ ..++|+.|+|.|+++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNG-KEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTT-CEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCC-CEECCcEEEEEECCCCC
Confidence 3457899999999999999999999999999999998 56999999999999999999966 59999999999999876
Q ss_pred CCC
Q 048750 271 QRP 273 (344)
Q Consensus 271 ~~~ 273 (344)
.+.
T Consensus 83 ~~~ 85 (90)
T 2dnp_A 83 KKS 85 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 56
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.4e-17 Score=130.07 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=74.5
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCC
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~ 270 (344)
+.+.++|||+|||.++++++|+++|++||.|.+|.|...++||||+|.+.++|++|++.|++ ..++|+.|+|.|++...
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAY-SKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTT-CBSSSSBCEEEEEETTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCC-CEECCeEEEEEECCCCc
Confidence 44578999999999999999999999999999999999999999999999999999999966 58999999999998755
Q ss_pred CC
Q 048750 271 QR 272 (344)
Q Consensus 271 ~~ 272 (344)
..
T Consensus 86 ~~ 87 (111)
T 1whx_A 86 FG 87 (111)
T ss_dssp TC
T ss_pred cC
Confidence 43
No 57
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.3e-16 Score=122.02 Aligned_cols=78 Identities=26% Similarity=0.382 Sum_probs=71.5
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
.....++|||+|||.++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v 89 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG-MELDGRRIRV 89 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTT-EEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCC-CEECCEEEEE
Confidence 3456899999999999999999999999999999999865 57999999999999999999965 6999999999
Q ss_pred EEcCC
Q 048750 264 MWGKP 268 (344)
Q Consensus 264 ~~ak~ 268 (344)
+|+++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99975
No 58
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=123.85 Aligned_cols=80 Identities=25% Similarity=0.419 Sum_probs=72.4
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC---------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ---------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~---------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
..++|||+|||.++++++|+++|++||.|.+|.|..+ +|||||+|.+.++|++|++.|++ ..++|+.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG-HTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT-CEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCC-CeeCCeEEEE
Confidence 4689999999999999999999999999999999853 57999999999999999999966 5999999999
Q ss_pred EEcCCCCCCC
Q 048750 264 MWGKPQTQRP 273 (344)
Q Consensus 264 ~~ak~~~~~~ 273 (344)
+|+++.....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9999866543
No 59
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.5e-16 Score=120.02 Aligned_cols=79 Identities=33% Similarity=0.466 Sum_probs=72.3
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCCC
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQ 271 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~~ 271 (344)
...++|||+|| ++++++|+++|++||.|.+|.|...+|||||+|.+.++|++|++.|++ ..++|+.|+|.|++++..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNG-TQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTT-EEETTEEEEEECCSSCCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEEECCCCCC
Confidence 45789999996 899999999999999999999998899999999999999999999965 699999999999998765
Q ss_pred CC
Q 048750 272 RP 273 (344)
Q Consensus 272 ~~ 273 (344)
..
T Consensus 90 ~~ 91 (97)
T 1x5p_A 90 LD 91 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 60
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=124.58 Aligned_cols=82 Identities=21% Similarity=0.386 Sum_probs=74.3
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
....++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~ 87 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG-KSVDGRQIRVD 87 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTT-CCTTSCCCEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEE
Confidence 345789999999999999999999999999999999875 68999999999999999999966 58999999999
Q ss_pred EcCCCCCCC
Q 048750 265 WGKPQTQRP 273 (344)
Q Consensus 265 ~ak~~~~~~ 273 (344)
|+++.....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 1x5s_A 88 QAGKSSDNR 96 (102)
T ss_dssp EEECCCCCC
T ss_pred ECCCCCCCC
Confidence 999876543
No 61
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.7e-16 Score=125.07 Aligned_cols=84 Identities=26% Similarity=0.349 Sum_probs=75.3
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCee--------EEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCe
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIE--------SIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKL 254 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~--------~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~ 254 (344)
.++...++|||+|||.++++++|+++|++||.|. .|+|..+ +|||||+|.+.++|++|++.|++ .
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~ 88 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG-K 88 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT-C
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC-C
Confidence 3456789999999999999999999999999999 6888875 68999999999999999999966 5
Q ss_pred EECCeEEEEEEcCCCCCCC
Q 048750 255 VIKGLRLKLMWGKPQTQRP 273 (344)
Q Consensus 255 ~i~g~~l~V~~ak~~~~~~ 273 (344)
.++|+.|+|.|++++....
T Consensus 89 ~~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp EETTEECEEECSSCCCCST
T ss_pred ccCCCEEEEEECCCCCCCC
Confidence 9999999999999876543
No 62
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.8e-16 Score=119.99 Aligned_cols=78 Identities=28% Similarity=0.496 Sum_probs=71.6
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcC--CCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAH--GEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~f--G~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
...++|||+|||.++++++|+++|++| |.|.++.+. ++||||+|.+.++|++|++.|++ ..++|+.|+|.|++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNG-KVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSS-EEETTEEEEEECCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCC-CEeCCcEEEEEECCCC
Confidence 457899999999999999999999999 999999886 78999999999999999999965 6999999999999987
Q ss_pred CCC
Q 048750 270 TQR 272 (344)
Q Consensus 270 ~~~ 272 (344)
...
T Consensus 90 ~~~ 92 (99)
T 2cpd_A 90 DKD 92 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 63
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=123.21 Aligned_cols=79 Identities=23% Similarity=0.429 Sum_probs=72.1
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
..+...++|||+|||.++++++|+++|++||.|.+|+|..+ +|||||+|.+.++|++|++.|++ ..++|+.|+|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNG-IRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTT-CEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCC-CEECCCEEEE
Confidence 34566899999999999999999999999999999999886 68999999999999999999966 5899999999
Q ss_pred EEcCC
Q 048750 264 MWGKP 268 (344)
Q Consensus 264 ~~ak~ 268 (344)
+|++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99874
No 64
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.68 E-value=2.6e-16 Score=124.40 Aligned_cols=83 Identities=24% Similarity=0.389 Sum_probs=74.3
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEE---CCeE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVI---KGLR 260 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i---~g~~ 260 (344)
.+...++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++. .+ +|+.
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~~~~g~~ 87 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQ-KTLPGMNRP 87 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTT-CCCTTCSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCC-cccCCCCce
Confidence 3456889999999999999999999999999999999884 689999999999999999999775 55 7899
Q ss_pred EEEEEcCCCCCCC
Q 048750 261 LKLMWGKPQTQRP 273 (344)
Q Consensus 261 l~V~~ak~~~~~~ 273 (344)
|+|+|++++..+.
T Consensus 88 l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 88 IQVKPADSESRGG 100 (106)
T ss_dssp CEEEECCCCSCCC
T ss_pred EEEEECCcccccC
Confidence 9999999876544
No 65
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=5.9e-16 Score=123.95 Aligned_cols=82 Identities=12% Similarity=0.194 Sum_probs=74.0
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
.....++|||+||+.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNG-QLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC-CEeCCCEEEEE
Confidence 3456789999999999999999999999999999999886 68999999999999999999966 59999999999
Q ss_pred EcCCCCCC
Q 048750 265 WGKPQTQR 272 (344)
Q Consensus 265 ~ak~~~~~ 272 (344)
|++....+
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 99875443
No 66
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=3.8e-16 Score=122.02 Aligned_cols=77 Identities=22% Similarity=0.368 Sum_probs=70.9
Q ss_pred CCCccEEEeccCCC-CCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 191 DESIKTLYVGGVDA-RITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 191 d~~~~tLfVgnL~~-~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
....++|||+||+. ++++++|+++|++||.|.++++. +|||||+|.+.++|++|++.|++ ..++|+.|+|+|++++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQ-EMNFGKKLILEVSSSN 95 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTT-SEETTEECEEEECCCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCC-CEECCEEEEEEecCCC
Confidence 34588999999998 99999999999999999999985 89999999999999999999966 5999999999999875
Q ss_pred C
Q 048750 270 T 270 (344)
Q Consensus 270 ~ 270 (344)
.
T Consensus 96 ~ 96 (97)
T 2xnq_A 96 A 96 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 67
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=2.1e-16 Score=122.89 Aligned_cols=81 Identities=20% Similarity=0.414 Sum_probs=72.1
Q ss_pred CCCCCccEEEeccCCCCCCHHHHH----HHhhcCCCeeEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLR----DNFYAHGEIESIKMHP---QKAFAFVTYTTREGAEKAAEELSNKLVIKGLRL 261 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~----~~F~~fG~I~~v~i~~---~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l 261 (344)
|+..+.++|||+|||.++++++|+ ++|++||.|.+|.+.. .+|||||+|.+.++|+.|++.|++ ..++|+.|
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l 81 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG-FPFYDKPM 81 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTT-CEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCC-CEECCcEE
Confidence 345568999999999999999999 9999999999999984 489999999999999999999966 58999999
Q ss_pred EEEEcCCCC
Q 048750 262 KLMWGKPQT 270 (344)
Q Consensus 262 ~V~~ak~~~ 270 (344)
+|.|++++.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999999854
No 68
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=130.69 Aligned_cols=80 Identities=15% Similarity=0.323 Sum_probs=71.1
Q ss_pred CCCCccEEEeccCCCCCCHHHHH----HHhhcCCCeeEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLR----DNFYAHGEIESIKMHP---QKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~----~~F~~fG~I~~v~i~~---~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
.....++|||+||+..+++++|+ ++|++||.|.+|.+.. .+|||||+|.+.++|+.|++.|+| ..+.|+.|+
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng-~~l~gr~l~ 103 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQG-YPFQGNPLV 103 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTT-CCCTTSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCC-CEeCCCEEE
Confidence 34557899999999999999876 7999999999999865 389999999999999999999966 589999999
Q ss_pred EEEcCCCC
Q 048750 263 LMWGKPQT 270 (344)
Q Consensus 263 V~~ak~~~ 270 (344)
|.|++++.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998754
No 69
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=8.1e-17 Score=126.33 Aligned_cols=77 Identities=25% Similarity=0.412 Sum_probs=71.9
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCCCC
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQR 272 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~~~ 272 (344)
++|||+|||.++++++|+++|++||+|.+|.+..+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+|+++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDG-KVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHH-SCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCC-CeECCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999997 99999999999999999999966 4899999999999986643
No 70
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=126.94 Aligned_cols=81 Identities=23% Similarity=0.465 Sum_probs=73.5
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
....++|||+|||.++++++|+++|++||.|.+|.|..+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g-~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNG-KSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSS-CBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCC-CEECCEEEEEEE
Confidence 345789999999999999999999999999999999986 49999999999999999999966 589999999999
Q ss_pred cCCCCCC
Q 048750 266 GKPQTQR 272 (344)
Q Consensus 266 ak~~~~~ 272 (344)
+++....
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9876543
No 71
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=126.04 Aligned_cols=79 Identities=29% Similarity=0.450 Sum_probs=72.6
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
....++|||+|||.++++++|+++|++||.|.+|.|..+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG-QDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTT-CBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcC-CEECCcEEEEE
Confidence 455789999999999999999999999999999999865 68999999999999999999966 59999999999
Q ss_pred EcCCCC
Q 048750 265 WGKPQT 270 (344)
Q Consensus 265 ~ak~~~ 270 (344)
|++++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998754
No 72
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=124.45 Aligned_cols=83 Identities=22% Similarity=0.393 Sum_probs=74.8
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
..+...++|||+|||.++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++. ++..++|+.|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~--~~~~~~g~~l~ 88 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS--RPHTLDGRNID 88 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH--CSEEETTEEEB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh--CCCeECCEEEE
Confidence 44567899999999999999999999999999999999886 47999999999999999997 45799999999
Q ss_pred EEEcCCCCCCC
Q 048750 263 LMWGKPQTQRP 273 (344)
Q Consensus 263 V~~ak~~~~~~ 273 (344)
|.|++++....
T Consensus 89 V~~a~~~~~~~ 99 (105)
T 2dh8_A 89 PKPCTPRGMQP 99 (105)
T ss_dssp CCCSCCSSCCT
T ss_pred EEEccCCCCCC
Confidence 99999876544
No 73
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.67 E-value=4.4e-16 Score=129.19 Aligned_cols=84 Identities=30% Similarity=0.489 Sum_probs=76.0
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
+++...++|||+||+.++++++|+++|++||+|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~ 115 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNG-FNILNKRLK 115 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTT-EECSSCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCeEEE
Confidence 34566899999999999999999999999999999999865 67999999999999999999965 699999999
Q ss_pred EEEcCCCCCCC
Q 048750 263 LMWGKPQTQRP 273 (344)
Q Consensus 263 V~~ak~~~~~~ 273 (344)
|.|+++...+.
T Consensus 116 v~~a~~~~~~~ 126 (139)
T 1u6f_A 116 VALAASGHQRP 126 (139)
T ss_dssp EEESSCCCCCC
T ss_pred EEECCCCCCCC
Confidence 99999876554
No 74
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9e-16 Score=121.04 Aligned_cols=80 Identities=14% Similarity=0.319 Sum_probs=72.3
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
+...++|||+|||.++++++|+++|++|| |.+|.|+.+ +|||||+|.+.++|++|+ .|++ ..++|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g-~~~~g~~l~V 88 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE-ESLGNKRIRV 88 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGT-CEETTEECEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCC-CEeCCcEEEE
Confidence 34578999999999999999999999999 999999865 689999999999999999 8966 5999999999
Q ss_pred EEcCCCCCCC
Q 048750 264 MWGKPQTQRP 273 (344)
Q Consensus 264 ~~ak~~~~~~ 273 (344)
.|++++..+.
T Consensus 89 ~~a~~~~~~~ 98 (104)
T 1wi8_A 89 DVADQAQDKD 98 (104)
T ss_dssp EECCCCCCCC
T ss_pred EEccCCCCCC
Confidence 9999876554
No 75
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.66 E-value=2.5e-16 Score=127.05 Aligned_cols=77 Identities=25% Similarity=0.404 Sum_probs=70.6
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
++...++|||+||+.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V 114 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNG-FQVGTKRLKV 114 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCC-CEETTEECCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCC-CEECCEEEEE
Confidence 4556799999999999999999999999999999999875 78999999999999999999966 5999999999
Q ss_pred EEcC
Q 048750 264 MWGK 267 (344)
Q Consensus 264 ~~ak 267 (344)
+|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9985
No 76
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.1e-16 Score=124.62 Aligned_cols=81 Identities=19% Similarity=0.425 Sum_probs=72.8
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCC-eeEEEEe-------CCCCEEEEEeCCHHHHHHHHHHhC-CCeEECCeEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGE-IESIKMH-------PQKAFAFVTYTTREGAEKAAEELS-NKLVIKGLRLK 262 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~-I~~v~i~-------~~kg~aFV~F~~~~~A~~A~~~l~-~~~~i~g~~l~ 262 (344)
...++|||+|||.++++++|+++|++||. |.++.++ ..+|||||+|.+.++|+.|++.|+ ++..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34789999999999999999999999998 9999998 348999999999999999999995 34799999999
Q ss_pred EEEcCCCCCC
Q 048750 263 LMWGKPQTQR 272 (344)
Q Consensus 263 V~~ak~~~~~ 272 (344)
|.|++++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999986543
No 77
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.66 E-value=4.6e-16 Score=124.17 Aligned_cols=80 Identities=20% Similarity=0.387 Sum_probs=70.8
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
+...++|||+||+.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.+ + ..++|+.|+|.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~-~~l~g~~l~V~ 99 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-R-HELDSKTIDPK 99 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-C-EEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-C-CcCCCEEEEEE
Confidence 455789999999999999999999999999999999875 689999999999999999976 5 79999999999
Q ss_pred EcCCCCCC
Q 048750 265 WGKPQTQR 272 (344)
Q Consensus 265 ~ak~~~~~ 272 (344)
|+.++..+
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99987654
No 78
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6e-17 Score=127.57 Aligned_cols=81 Identities=25% Similarity=0.425 Sum_probs=73.8
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
+.+...++|||+|||.++++++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.|++ ..++|+.|+
T Consensus 3 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~ 81 (104)
T 1p1t_A 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG-REFSGRALR 81 (104)
T ss_dssp CSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSS-BSCSSSCBE
T ss_pred CcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC-CeeCCcEEE
Confidence 44566899999999999999999999999999999999865 68999999999999999999966 589999999
Q ss_pred EEEcCCCC
Q 048750 263 LMWGKPQT 270 (344)
Q Consensus 263 V~~ak~~~ 270 (344)
|.|+++..
T Consensus 82 v~~a~~~~ 89 (104)
T 1p1t_A 82 VDNAASEK 89 (104)
T ss_dssp EEETTCTT
T ss_pred EEeCCCcc
Confidence 99998754
No 79
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=124.36 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=74.8
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhc-CCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeE-ECCeEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYA-HGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLV-IKGLRLK 262 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~-fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~-i~g~~l~ 262 (344)
+....++|||+|||.++++++|+++|++ ||.|.+|+|+.+ +|||||+|.+.++|++|++.|++. . ++|+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGA-VGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTC-CSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCC-cccCCEeEE
Confidence 3456789999999999999999999999 999999999876 789999999999999999999764 6 9999999
Q ss_pred EEEcCCCCCCC
Q 048750 263 LMWGKPQTQRP 273 (344)
Q Consensus 263 V~~ak~~~~~~ 273 (344)
|.|++++..+.
T Consensus 84 v~~a~~~~~~~ 94 (104)
T 2dhg_A 84 LSVAIPKASRV 94 (104)
T ss_dssp CCBCCCCCSCC
T ss_pred EEEccCCCcCC
Confidence 99998866544
No 80
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.2e-16 Score=124.76 Aligned_cols=79 Identities=23% Similarity=0.392 Sum_probs=71.5
Q ss_pred CCccEEEe--ccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEE-----CCeEEEEE
Q 048750 192 ESIKTLYV--GGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVI-----KGLRLKLM 264 (344)
Q Consensus 192 ~~~~tLfV--gnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i-----~g~~l~V~ 264 (344)
.+.++||| |||+.++++++|+++|++||+|.+|.|..++|||||+|.+.++|++|++.|+|. .+ .|+.|.|.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~-~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGK-EVVDDLGQKITLYLN 101 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTC-EEECTTSCEEECEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC-EEccccCCCcEEEEE
Confidence 34688999 889999999999999999999999999999999999999999999999999775 66 68999999
Q ss_pred EcCCCCC
Q 048750 265 WGKPQTQ 271 (344)
Q Consensus 265 ~ak~~~~ 271 (344)
|++....
T Consensus 102 ~a~~~p~ 108 (114)
T 2cq2_A 102 FVEKVQW 108 (114)
T ss_dssp EESCCCC
T ss_pred ecccCcc
Confidence 9986443
No 81
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.3e-16 Score=122.83 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=70.7
Q ss_pred CCccEEEeccCCC-CCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCC
Q 048750 192 ESIKTLYVGGVDA-RITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 192 ~~~~tLfVgnL~~-~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~ 270 (344)
...++|||+|||. ++++++|+++|++||.|.++.+. +|||||+|.+.++|++|++.|++ ..++|+.|+|.|+++..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQ-EMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTC-SSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCC-CeeCCcEEEEEEcCcCC
Confidence 4578999999998 99999999999999999999996 89999999999999999999966 58999999999998765
Q ss_pred CC
Q 048750 271 QR 272 (344)
Q Consensus 271 ~~ 272 (344)
..
T Consensus 85 ~~ 86 (96)
T 2kvi_A 85 RP 86 (96)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 82
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=1.2e-15 Score=120.13 Aligned_cols=80 Identities=19% Similarity=0.312 Sum_probs=71.9
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
+...++|||+|||.++++++|+++|++|| |.+|+|+.+ +|||||+|.+.++|++|+ .|++ ..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g-~~~~g~~l~V~ 88 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDG-ALLGDRSLRVD 88 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTT-CEETTEECEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCC-CeECCeEEEEE
Confidence 45578999999999999999999999997 999999876 579999999999999999 7865 69999999999
Q ss_pred EcCCCCCCC
Q 048750 265 WGKPQTQRP 273 (344)
Q Consensus 265 ~ak~~~~~~ 273 (344)
|++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dng_A 89 IAEGRKQDK 97 (103)
T ss_dssp ECCCCCCCC
T ss_pred EecCCCCCC
Confidence 999876543
No 83
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.1e-16 Score=121.51 Aligned_cols=78 Identities=19% Similarity=0.321 Sum_probs=69.4
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHP--QKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~--~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
...++|||+|||.++++++|+++|++||.|. +.++. .+|||||+|.+.++|++|++.|++ ..++|+.|+|+|++++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQG-LRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTT-CCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCC-CEECCcEEEEEEcCCC
Confidence 4478999999999999999999999999996 55554 489999999999999999999966 5899999999999986
Q ss_pred CC
Q 048750 270 TQ 271 (344)
Q Consensus 270 ~~ 271 (344)
..
T Consensus 95 ~~ 96 (97)
T 2e5j_A 95 RD 96 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 84
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.3e-16 Score=121.59 Aligned_cols=78 Identities=21% Similarity=0.369 Sum_probs=71.7
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCee-EEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeE----
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIE-SIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLR---- 260 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~-~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~---- 260 (344)
...++|||+|||.++++++|+++|++||.|. +++|+.+ +|||||+|.+.++|++|++.|++ ..++|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~~~~~ 85 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING-KPLPGATPAKR 85 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTT-SEESSCSSCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcC-CccCCCCccee
Confidence 4578999999999999999999999999999 9999876 38999999999999999999966 5899998
Q ss_pred EEEEEcCCCC
Q 048750 261 LKLMWGKPQT 270 (344)
Q Consensus 261 l~V~~ak~~~ 270 (344)
|+|.|+++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998764
No 85
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.6e-15 Score=119.35 Aligned_cols=81 Identities=25% Similarity=0.368 Sum_probs=72.5
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
..+...++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++. ...++|+.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~---~~~~~g~~l~ 86 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ---RHMIDGRWCD 86 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS---CEEETTEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc---CCeeCCeEEE
Confidence 44566889999999999999999999999999999999876 57999999999999999983 3699999999
Q ss_pred EEEcCCCCCC
Q 048750 263 LMWGKPQTQR 272 (344)
Q Consensus 263 V~~ak~~~~~ 272 (344)
|.|++++...
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999986544
No 86
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=1.1e-15 Score=121.84 Aligned_cols=76 Identities=18% Similarity=0.359 Sum_probs=70.1
Q ss_pred CccEEEeccCCCC-CCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCCC
Q 048750 193 SIKTLYVGGVDAR-ITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQ 271 (344)
Q Consensus 193 ~~~tLfVgnL~~~-~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~~ 271 (344)
..++|||+||+.+ +++++|+++|++||.|.+|.| .++||||+|.+.++|++|++.|++ ..++|+.|+|.|+++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENG-RVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTT-CEETTEECCEEESCCCCS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCC-CEECCeEEEEEECCCCCC
Confidence 4689999999999 999999999999999999999 589999999999999999999966 599999999999986543
No 87
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.65 E-value=2.9e-16 Score=125.18 Aligned_cols=79 Identities=34% Similarity=0.500 Sum_probs=72.3
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
+...++|||+|||.++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g-~~i~g~~l~V~ 101 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPMKVG 101 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTT-CCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCC-CEECCEEEEEE
Confidence 445789999999999999999999999999999999865 58999999999999999999966 58999999999
Q ss_pred EcCCCC
Q 048750 265 WGKPQT 270 (344)
Q Consensus 265 ~ak~~~ 270 (344)
|++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998753
No 88
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.9e-16 Score=124.24 Aligned_cols=77 Identities=22% Similarity=0.358 Sum_probs=70.2
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
.+...++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++ ++ +..++|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~-~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TP-GQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SS-CCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cC-CCEECCEEEEEE
Confidence 3456789999999999999999999999999999999874 7999999999999999998 74 469999999999
Q ss_pred EcCC
Q 048750 265 WGKP 268 (344)
Q Consensus 265 ~ak~ 268 (344)
|++.
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 9865
No 89
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.65 E-value=4.1e-16 Score=127.21 Aligned_cols=83 Identities=28% Similarity=0.423 Sum_probs=75.0
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
.....++|||+|||.++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.|++ ..|+|+.|+|
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v 96 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG-QDLMGQPISV 96 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTT-CBSSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC-CeeCCeEEEE
Confidence 3455789999999999999999999999999999999876 78999999999999999999966 5899999999
Q ss_pred EEcCCCCCCC
Q 048750 264 MWGKPQTQRP 273 (344)
Q Consensus 264 ~~ak~~~~~~ 273 (344)
.|++++....
T Consensus 97 ~~a~~~~~~~ 106 (126)
T 3ex7_B 97 DWCFVRGPPK 106 (126)
T ss_dssp EESEESSSCC
T ss_pred EEecCCCCCC
Confidence 9998766543
No 90
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=6e-16 Score=118.19 Aligned_cols=76 Identities=21% Similarity=0.503 Sum_probs=69.9
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
..++|||+|||.++++++|+++|++||.|.++++..+ +|||||+|.+.++|++|+ .|++ ..++|+.|+|.|+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g-~~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDE-SLFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTT-CEETTEECEEEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCC-CEECCcEEEEEEc
Confidence 4689999999999999999999999999999999875 789999999999999999 8866 5899999999999
Q ss_pred CCCC
Q 048750 267 KPQT 270 (344)
Q Consensus 267 k~~~ 270 (344)
++..
T Consensus 83 ~~~~ 86 (89)
T 3ucg_A 83 RTNR 86 (89)
T ss_dssp TTTS
T ss_pred cCCC
Confidence 8743
No 91
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.65 E-value=7.7e-16 Score=121.89 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=71.0
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
.....++|||+|||..+++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNG-VPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCC-CEeCCcEEEEE
Confidence 3456899999999999999999999999999999999965 78999999999999999999966 59999999999
Q ss_pred EcC
Q 048750 265 WGK 267 (344)
Q Consensus 265 ~ak 267 (344)
|++
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 92
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.65 E-value=4.9e-16 Score=121.45 Aligned_cols=77 Identities=21% Similarity=0.328 Sum_probs=70.4
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeE--------EEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIES--------IKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLV 255 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~--------v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~ 255 (344)
.....++|||+||+.++++++|+++|++||.|.+ ++++.+ +|||||+|.+.++|++|++.|++ ..
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g-~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG-KE 87 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT-CB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC-CE
Confidence 3456899999999999999999999999999999 988875 57999999999999999999966 58
Q ss_pred ECCeEEEEEEcC
Q 048750 256 IKGLRLKLMWGK 267 (344)
Q Consensus 256 i~g~~l~V~~ak 267 (344)
++|+.|+|+||+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999985
No 93
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.64 E-value=6e-16 Score=124.11 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=69.6
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCC-CeeEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHG-EIESIKMHP--QKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG-~I~~v~i~~--~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
...+|||+|||.++++++|+++|++|| +|..+.|.. .+|||||+|.+.++|++|++.|++ ..++|+.|+|+|++..
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng-~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNN-IEFRGSVITVERDDNP 105 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTT-EEETTEEEEEEESCC-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCC-CEECCeEEEEEECCCC
Confidence 468999999999999999999999999 999999964 489999999999999999999955 6999999999999764
Q ss_pred C
Q 048750 270 T 270 (344)
Q Consensus 270 ~ 270 (344)
.
T Consensus 106 p 106 (111)
T 2jvr_A 106 P 106 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 94
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.64 E-value=4e-16 Score=128.44 Aligned_cols=80 Identities=25% Similarity=0.397 Sum_probs=73.2
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
....++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..|+|+.|+|+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng-~~i~g~~l~V~ 121 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG-MELDGRRIRVD 121 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTT-CCSSSSCCEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC-CEECCEEEEEE
Confidence 455789999999999999999999999999999999864 78999999999999999999966 58999999999
Q ss_pred EcCCCCC
Q 048750 265 WGKPQTQ 271 (344)
Q Consensus 265 ~ak~~~~ 271 (344)
|++++..
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9988653
No 95
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.64 E-value=6.4e-16 Score=130.04 Aligned_cols=79 Identities=22% Similarity=0.317 Sum_probs=73.6
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
....++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+|++++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDG-RTLCGCRVRVELSNGE 148 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSS-SCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCC-CEECCeEEEEEEcCCC
Confidence 445789999999999999999999999999999999988 99999999999999999999966 5899999999999886
Q ss_pred C
Q 048750 270 T 270 (344)
Q Consensus 270 ~ 270 (344)
.
T Consensus 149 ~ 149 (150)
T 2i2y_A 149 K 149 (150)
T ss_dssp C
T ss_pred C
Confidence 4
No 96
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.64 E-value=5.7e-16 Score=126.09 Aligned_cols=101 Identities=28% Similarity=0.366 Sum_probs=71.5
Q ss_pred cccccccccccCCCChHHHhhhhccCCCCCCCCCCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEE
Q 048750 156 LSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFV 235 (344)
Q Consensus 156 ~~~~~i~d~~~g~~~p~a~k~l~~~~~~~~~~~p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV 235 (344)
+..+.++|++.++.++... .. .....++|||+|+ ++++++|+++|++||.|.+|.|...+|||||
T Consensus 14 ~~~~~~~d~~~~r~~~~~~-----------~~--~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV 78 (121)
T 2bz2_A 14 LVPRGSHMGPFRRSDSFPE-----------RR--APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV 78 (121)
T ss_dssp ----------------------------------CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEE
T ss_pred ccCCCCCCCCCCCCCCCCC-----------CC--CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEE
Confidence 4455666777665543221 11 1235789999996 6999999999999999999999989999999
Q ss_pred EeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCCCC
Q 048750 236 TYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQR 272 (344)
Q Consensus 236 ~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~~~ 272 (344)
+|.+.++|++|++.|++ ..++|+.|+|.|++++...
T Consensus 79 ~f~~~~~A~~Ai~~lng-~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 79 TYEKMESADQAVAELNG-TQVESVQLKVNIARKQPML 114 (121)
T ss_dssp ECSSHHHHHHHHHHHTT-CBCSSCBCEEEECCSSCC-
T ss_pred EECCHHHHHHHHHHhCC-CEECCeEEEEEEeCCCCCC
Confidence 99999999999999966 5899999999999986543
No 97
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.7e-15 Score=121.09 Aligned_cols=78 Identities=26% Similarity=0.432 Sum_probs=71.6
Q ss_pred CCccEEEeccCCCCCCHHHHH---HHhhcCCCeeEEEEeCCC---------CEEEEEeCCHHHHHHHHHHhCCCeEECCe
Q 048750 192 ESIKTLYVGGVDARITEQDLR---DNFYAHGEIESIKMHPQK---------AFAFVTYTTREGAEKAAEELSNKLVIKGL 259 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~---~~F~~fG~I~~v~i~~~k---------g~aFV~F~~~~~A~~A~~~l~~~~~i~g~ 259 (344)
...++|||+|||.++++++|+ ++|++||+|.+|.|+.++ |||||+|.+.++|++|++.|++ ..++|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng-~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN-VVVDGR 91 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT-EEETTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCC-CEECCE
Confidence 346799999999999999999 999999999999998753 6999999999999999999966 699999
Q ss_pred EEEEEEcCCCC
Q 048750 260 RLKLMWGKPQT 270 (344)
Q Consensus 260 ~l~V~~ak~~~ 270 (344)
.|+|.|++++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999999865
No 98
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.64 E-value=2.7e-16 Score=130.45 Aligned_cols=86 Identities=23% Similarity=0.441 Sum_probs=76.6
Q ss_pred CCCCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeE
Q 048750 187 EPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLR 260 (344)
Q Consensus 187 ~~p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~ 260 (344)
.++.+...++|||+|||.++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.|++ ..++|+.
T Consensus 40 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g-~~i~g~~ 118 (135)
T 2lea_A 40 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG-AVLDGRE 118 (135)
T ss_dssp SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTT-CCSSSSC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC-CEECCEE
Confidence 3455667889999999999999999999999999999999865 68999999999999999999966 5899999
Q ss_pred EEEEEcCCCCCCC
Q 048750 261 LKLMWGKPQTQRP 273 (344)
Q Consensus 261 l~V~~ak~~~~~~ 273 (344)
|+|+|+++.....
T Consensus 119 l~V~~a~~~~~~~ 131 (135)
T 2lea_A 119 LRVQMARYGRPPD 131 (135)
T ss_dssp CEEEECCCCCCCT
T ss_pred EEEEECCCCCCCc
Confidence 9999999866543
No 99
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.2e-15 Score=117.14 Aligned_cols=79 Identities=24% Similarity=0.328 Sum_probs=69.3
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
.+...++|||+|||.++++++|+++|++||.| +++.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNK-REIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSS-EEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCC-CEeCCeEEEEE
Confidence 34568999999999999999999999999988 34332 79999999999999999999965 69999999999
Q ss_pred EcCCCCCC
Q 048750 265 WGKPQTQR 272 (344)
Q Consensus 265 ~ak~~~~~ 272 (344)
|++++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2fc9_A 87 LQGPRGSP 94 (101)
T ss_dssp ECSSCCCC
T ss_pred EcCCCCCC
Confidence 99986543
No 100
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=9.7e-17 Score=123.41 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=64.5
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCC--CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHG--EIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG--~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
.+|||+||+.++++++|+++|++|| .|.+++++.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g-~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK-RELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGG-SCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCC-CeeCCEEEEEEEC
Confidence 4799999999999999999999999 9999999875 57999999999999999999966 5899999999999
Q ss_pred CCCCC
Q 048750 267 KPQTQ 271 (344)
Q Consensus 267 k~~~~ 271 (344)
++...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87543
No 101
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.63 E-value=1.7e-15 Score=128.34 Aligned_cols=81 Identities=26% Similarity=0.393 Sum_probs=73.4
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
...++|||+|||.++++++|+++|++||.|.+|.|+.+ ++||||+|.+.++|++|++.|++ ..|+|+.|+|+|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING-TRLDDRIIRTDW 115 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT-SEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEEE
Confidence 35789999999999999999999999999999999875 57999999999999999999966 599999999999
Q ss_pred cCCCCCCC
Q 048750 266 GKPQTQRP 273 (344)
Q Consensus 266 ak~~~~~~ 273 (344)
+++.....
T Consensus 116 a~~~~~~~ 123 (156)
T 1h2v_Z 116 DAGFKEGR 123 (156)
T ss_dssp ESCCCTTC
T ss_pred CCCCCCcC
Confidence 99865443
No 102
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.63 E-value=2.2e-16 Score=124.06 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=70.3
Q ss_pred CCccEEEeccCCC------CCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECC-
Q 048750 192 ESIKTLYVGGVDA------RITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKG- 258 (344)
Q Consensus 192 ~~~~tLfVgnL~~------~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g- 258 (344)
...++|||+|||. ++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..++|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng-~~~~g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG-KRLDLK 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT-CBSSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC-cccCCC
Confidence 3468999999999 9999999999999999999999864 69999999999999999999966 58898
Q ss_pred eEEEEEEcCCC
Q 048750 259 LRLKLMWGKPQ 269 (344)
Q Consensus 259 ~~l~V~~ak~~ 269 (344)
+.|+|.|+++.
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999999763
No 103
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=1.2e-15 Score=116.23 Aligned_cols=75 Identities=20% Similarity=0.438 Sum_probs=67.8
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
.+...++|||+|||.++++++|+++|++||.|.+++++.+ +|||||+|.+.++|++|++. ++ ..++|+.|+|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~-~~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KE-HRLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SC-EEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CC-CEECCEEEEE
Confidence 3456889999999999999999999999999999999875 67999999999999999964 45 5899999999
Q ss_pred EEc
Q 048750 264 MWG 266 (344)
Q Consensus 264 ~~a 266 (344)
+||
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 104
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=121.76 Aligned_cols=80 Identities=18% Similarity=0.339 Sum_probs=72.0
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEE-------
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVI------- 256 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i------- 256 (344)
..+...++|||+|||.++++++|+++|++||.|.+++|+.+ +|||||+|.+.++|++|++.|++. .+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK-FIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTC-CCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCC-EEcCCcccc
Confidence 34556789999999999999999999999999999999876 689999999999999999999775 66
Q ss_pred -CCeEEEEEEcCCC
Q 048750 257 -KGLRLKLMWGKPQ 269 (344)
Q Consensus 257 -~g~~l~V~~ak~~ 269 (344)
.+++|.|+|+++.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5788999999875
No 105
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.63 E-value=1e-15 Score=130.53 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=73.6
Q ss_pred CCCCCCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC--CCEEEEEeCCHHHHHHHHHHhCCCeEECC--eE
Q 048750 185 SLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ--KAFAFVTYTTREGAEKAAEELSNKLVIKG--LR 260 (344)
Q Consensus 185 ~~~~p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~--kg~aFV~F~~~~~A~~A~~~l~~~~~i~g--~~ 260 (344)
++..+......+|||+||+..+++++|+++|++||+|.+|.|..+ ++||||+|.+.++|++|++.|+|. .|.| +.
T Consensus 37 g~~~~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~-~i~g~g~~ 115 (164)
T 1sjr_A 37 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQ-NIYNACCT 115 (164)
T ss_dssp ---CCCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTB-CSSSSCSC
T ss_pred CCCCCCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCC-EecCCCcE
Confidence 344455566889999999999999999999999999999999754 579999999999999999999775 6744 99
Q ss_pred EEEEEcCCCCCC
Q 048750 261 LKLMWGKPQTQR 272 (344)
Q Consensus 261 l~V~~ak~~~~~ 272 (344)
|+|+|++++...
T Consensus 116 L~V~~Ak~~~l~ 127 (164)
T 1sjr_A 116 LRIDFSKLTSLN 127 (164)
T ss_dssp EEEEECSSSSCC
T ss_pred EEEEEecCCccc
Confidence 999999987543
No 106
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.63 E-value=4.3e-15 Score=120.96 Aligned_cols=80 Identities=19% Similarity=0.269 Sum_probs=73.2
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
....++|||+||+.++++++|+++|++||.|.+|+|..+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKG-VPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTT-EESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCC-CEECCcEEEEEE
Confidence 456789999999999999999999999999999999874 79999999999999999999965 699999999999
Q ss_pred cCCCCC
Q 048750 266 GKPQTQ 271 (344)
Q Consensus 266 ak~~~~ 271 (344)
+.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 987543
No 107
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.8e-15 Score=115.22 Aligned_cols=77 Identities=14% Similarity=0.270 Sum_probs=70.7
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
....++|||+|||.++++++|+++|+.| .|.+|+|+.+ +|||||+|.+.++|++|++ |++ ..++|+.|+|.|
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g-~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNR-EYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCS-EEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCC-ceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999876 6799999999999999999 855 699999999999
Q ss_pred cCCCC
Q 048750 266 GKPQT 270 (344)
Q Consensus 266 ak~~~ 270 (344)
++++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98864
No 108
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=1.8e-15 Score=116.35 Aligned_cols=77 Identities=26% Similarity=0.502 Sum_probs=63.2
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCC-CeEECCeEEEEEEcCC
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-KAFAFVTYTTREGAEKAAEELSN-KLVIKGLRLKLMWGKP 268 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~A~~A~~~l~~-~~~i~g~~l~V~~ak~ 268 (344)
....++|||+|||.+++|++|+++|++||.|.+++|+.+ +|||||+|.+.++|++ +++ .+.++|+.|.|.|+++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 345789999999999999999999999999999999976 8999999999999984 333 3456799999999998
Q ss_pred CCC
Q 048750 269 QTQ 271 (344)
Q Consensus 269 ~~~ 271 (344)
+..
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 109
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=124.71 Aligned_cols=75 Identities=24% Similarity=0.500 Sum_probs=69.0
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
+...++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 138 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE-SELFGRTIRVN 138 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTE-EEETTEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCC-CEECCEEEEEE
Confidence 456899999999999999999999999999999999875 79999999999999999999955 69999999999
Q ss_pred Ec
Q 048750 265 WG 266 (344)
Q Consensus 265 ~a 266 (344)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 110
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.62 E-value=3.1e-15 Score=126.69 Aligned_cols=82 Identities=22% Similarity=0.391 Sum_probs=74.3
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
....++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 145 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG-AVLDGRELRVQ 145 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTT-EESSSSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEE
Confidence 345789999999999999999999999999999999875 68999999999999999999966 68999999999
Q ss_pred EcCCCCCCC
Q 048750 265 WGKPQTQRP 273 (344)
Q Consensus 265 ~ak~~~~~~ 273 (344)
|+++...+.
T Consensus 146 ~a~~~~~~~ 154 (158)
T 2kn4_A 146 MARYGRPPD 154 (158)
T ss_dssp EECCSSCCC
T ss_pred ECCCCCCCC
Confidence 999865543
No 111
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=121.32 Aligned_cols=80 Identities=20% Similarity=0.400 Sum_probs=72.7
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
...++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++. ++..++|+.|+|.|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~--~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA--RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS--CSEEETTEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh--CCcEECCEEEEEEE
Confidence 44689999999999999999999999999999999886 68999999999999999986 45799999999999
Q ss_pred cCCCCCCC
Q 048750 266 GKPQTQRP 273 (344)
Q Consensus 266 ak~~~~~~ 273 (344)
++++....
T Consensus 103 a~~~~~~~ 110 (116)
T 1x4b_A 103 AVAREESG 110 (116)
T ss_dssp CSSCCCCC
T ss_pred CCCCccCC
Confidence 99876544
No 112
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=1.4e-15 Score=116.41 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=70.7
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~ 270 (344)
..++|||+|||.++++++|+++|++| .|.++++...+|||||+|.+.++|++|++.|++ ..++|+.|+|+|+....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQ-YSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTT-EEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCC-CeECCcEEEEEEcCCCc
Confidence 46899999999999999999999999 999999988899999999999999999999965 69999999999997654
No 113
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.62 E-value=5.3e-16 Score=127.79 Aligned_cols=82 Identities=16% Similarity=0.297 Sum_probs=72.9
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeE--EEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCe----EE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIES--IKMHPQ------KAFAFVTYTTREGAEKAAEELSNKL----VI 256 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~--v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~----~i 256 (344)
..+...++|||+||+.++++++|+++|++||.|.. |+|+.+ +|||||+|.+. +|++|++.|++ . .+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g-~~~~~~~ 95 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQA-LHPPLTI 95 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTT-CCCSCCG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcC-CCCCccC
Confidence 34556789999999999999999999999999977 898876 69999999999 99999999965 5 89
Q ss_pred CCeEEEEEEcCCCCCC
Q 048750 257 KGLRLKLMWGKPQTQR 272 (344)
Q Consensus 257 ~g~~l~V~~ak~~~~~ 272 (344)
+|+.|+|+|+++....
T Consensus 96 ~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGCCCCCEECCCSCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999986543
No 114
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=118.88 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=70.0
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
+...++|||+|||.++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND-RPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTT-CEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC-CeeCCeEEEEE
Confidence 345789999999999999999999999999987766643 68999999999999999999966 59999999999
Q ss_pred EcCCCC
Q 048750 265 WGKPQT 270 (344)
Q Consensus 265 ~ak~~~ 270 (344)
|++...
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 998643
No 115
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.2e-16 Score=123.30 Aligned_cols=79 Identities=22% Similarity=0.394 Sum_probs=71.2
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
++...++|||+||+.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|+ .|++ ..++|+.|+|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g-~~~~g~~l~V 98 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTG-QRLLGVPIIV 98 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTT-EEETTEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCC-CEeCCeEEEE
Confidence 3455789999999999999999999999999999999864 689999999999999999 8955 6999999999
Q ss_pred EEcCCCC
Q 048750 264 MWGKPQT 270 (344)
Q Consensus 264 ~~ak~~~ 270 (344)
.|++++.
T Consensus 99 ~~a~~~~ 105 (114)
T 2cq4_A 99 QASQAEK 105 (114)
T ss_dssp EEHHHHH
T ss_pred EecCCCc
Confidence 9998643
No 116
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.62 E-value=1.5e-15 Score=121.78 Aligned_cols=79 Identities=22% Similarity=0.338 Sum_probs=72.3
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ---KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~---kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
..++|||+|||.++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.|+++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSG-FNVSNRYLVVLYYNAN 85 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTT-CBSSSCBCEEEECCHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCC-CEECCeEEEEEEecCC
Confidence 4689999999999999999999999999999999875 78999999999999999999966 5899999999999875
Q ss_pred CCC
Q 048750 270 TQR 272 (344)
Q Consensus 270 ~~~ 272 (344)
...
T Consensus 86 ~~~ 88 (115)
T 3lqv_A 86 RAF 88 (115)
T ss_dssp HHT
T ss_pred hhh
Confidence 544
No 117
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=119.78 Aligned_cols=79 Identities=14% Similarity=0.131 Sum_probs=70.6
Q ss_pred CCCccEEEeccCCCCC------CHHHHHHHhhcCCCeeEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCeEECCe-
Q 048750 191 DESIKTLYVGGVDARI------TEQDLRDNFYAHGEIESIKMHP----QKAFAFVTYTTREGAEKAAEELSNKLVIKGL- 259 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~------te~~L~~~F~~fG~I~~v~i~~----~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~- 259 (344)
+...++|||+|||..+ ++++|+++|++||.|.+|.|.. .+|||||+|.+.++|++|++.|++ ..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g-~~~~g~~ 90 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADG-YKLDKQH 90 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSS-EECSTTC
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCC-cccCCCc
Confidence 3446899999999999 7899999999999999999984 279999999999999999999966 699998
Q ss_pred EEEEEEcCCCC
Q 048750 260 RLKLMWGKPQT 270 (344)
Q Consensus 260 ~l~V~~ak~~~ 270 (344)
.|+|.|+....
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999998643
No 118
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.61 E-value=2e-15 Score=122.72 Aligned_cols=78 Identities=26% Similarity=0.497 Sum_probs=70.9
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
..++|||+||+.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|+ .|++ ..++|+.|+|.|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g-~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDE-TVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTT-CEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCC-CeECCeEEEEEEC
Confidence 4689999999999999999999999999999999864 689999999999999999 7865 5999999999999
Q ss_pred CCCCCC
Q 048750 267 KPQTQR 272 (344)
Q Consensus 267 k~~~~~ 272 (344)
++....
T Consensus 113 ~~~~~~ 118 (124)
T 2jwn_A 113 RTNMPG 118 (124)
T ss_dssp SCCCSS
T ss_pred CCCCCC
Confidence 876543
No 119
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.8e-16 Score=118.44 Aligned_cols=75 Identities=25% Similarity=0.302 Sum_probs=69.0
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
..++|||+|||.++++++|+++|++||.|.++.|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA-SGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH-HTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC-CeEeeEEEeecCC
Confidence 4789999999999999999999999999999999876 78999999999999999999966 5899999998886
Q ss_pred CC
Q 048750 267 KP 268 (344)
Q Consensus 267 k~ 268 (344)
++
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 120
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.61 E-value=7.2e-16 Score=120.94 Aligned_cols=77 Identities=14% Similarity=0.318 Sum_probs=67.9
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
....++|||+||+.++++++|+++|++|| |.+|+|+.+ +|||||+|.+.++|++|+ .|++ ..++|+.|+|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g-~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE-ESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTT-CCBTTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCC-CEECCeEEEE
Confidence 45679999999999999999999999999 999999875 589999999999999999 8966 5899999999
Q ss_pred EEcCCCC
Q 048750 264 MWGKPQT 270 (344)
Q Consensus 264 ~~ak~~~ 270 (344)
+|++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998754
No 121
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.1e-15 Score=114.57 Aligned_cols=79 Identities=22% Similarity=0.364 Sum_probs=67.7
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCC-EEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCC
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKA-FAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg-~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~ 270 (344)
...++|||+|||.++++++|+++|++||.|.+|.+....+ ||||+|.+.++|++|++ |++ ..++|+.|+|+|+.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g-~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQ-HSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSC-CEETTEECCCBCSCCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCC-eEECCEEEEEEECCcCC
Confidence 3468999999999999999999999999999983333222 99999999999999999 855 69999999999987655
Q ss_pred CC
Q 048750 271 QR 272 (344)
Q Consensus 271 ~~ 272 (344)
..
T Consensus 84 ~~ 85 (94)
T 2e5g_A 84 FQ 85 (94)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 122
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=1.5e-15 Score=122.33 Aligned_cols=83 Identities=19% Similarity=0.326 Sum_probs=67.0
Q ss_pred CCCCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeE-----E
Q 048750 187 EPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLR-----L 261 (344)
Q Consensus 187 ~~p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~-----l 261 (344)
.+|......+|||+|||.++++++|+++|++||+|.+|.|+.+ |||||+|.+.++|++|++.|++ ..|+|+. |
T Consensus 9 gpp~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g-~~~~gr~~~~~~i 86 (115)
T 3beg_B 9 GPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDN-TKFRSHEGETAYI 86 (115)
T ss_dssp --------CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTT-CBCCCTTSCCCBC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCC-CEECCcEeeeEEE
Confidence 3444566889999999999999999999999999999999987 9999999999999999999966 5899988 8
Q ss_pred EEEEcCCCCC
Q 048750 262 KLMWGKPQTQ 271 (344)
Q Consensus 262 ~V~~ak~~~~ 271 (344)
+|..+++...
T Consensus 87 ~v~~~~~~~~ 96 (115)
T 3beg_B 87 RVKVDGPRSP 96 (115)
T ss_dssp EEEECC----
T ss_pred EeccCCCCCC
Confidence 8888776543
No 123
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=128.57 Aligned_cols=76 Identities=22% Similarity=0.303 Sum_probs=69.4
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCC--CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHG--EIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG--~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
..++|||+||+.++++++|+++|++|| .|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..|+|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng-~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPG-KVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTT-CEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC-CEECCeEeEEE
Confidence 468999999999999999999999999 9999999875 68999999999999999999966 59999999999
Q ss_pred EcCCC
Q 048750 265 WGKPQ 269 (344)
Q Consensus 265 ~ak~~ 269 (344)
|++++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99863
No 124
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.60 E-value=2.9e-15 Score=128.22 Aligned_cols=82 Identities=24% Similarity=0.415 Sum_probs=72.5
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
....++|||+|||..+++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.|++ ..|+|+.|.|.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~ 147 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG-AEIMGQTIQVD 147 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCC-CEECCEEEEEE
Confidence 445789999999999999999999999999999999876 68999999999999999999966 59999999999
Q ss_pred EcCCCCCCC
Q 048750 265 WGKPQTQRP 273 (344)
Q Consensus 265 ~ak~~~~~~ 273 (344)
|++++..+.
T Consensus 148 ~a~~~~~~~ 156 (165)
T 1rk8_A 148 WCFVKGPKR 156 (165)
T ss_dssp ESEECC---
T ss_pred EecCCCCCC
Confidence 998866543
No 125
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.1e-15 Score=119.94 Aligned_cols=81 Identities=30% Similarity=0.405 Sum_probs=71.5
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCe----eEEEEeCC--CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEI----ESIKMHPQ--KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I----~~v~i~~~--kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
...++|||+|||.++++++|+++|++||.| ..+++... +|||||+|.+.++|++|++.|++ ..++|+.|+|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNG-YKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTT-CBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCC-CEeCCcEEEEEE
Confidence 346899999999999999999999999998 56666643 79999999999999999999966 588999999999
Q ss_pred cCCCCCCC
Q 048750 266 GKPQTQRP 273 (344)
Q Consensus 266 ak~~~~~~ 273 (344)
++++..+.
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 99876554
No 126
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4.7e-15 Score=114.96 Aligned_cols=80 Identities=19% Similarity=0.341 Sum_probs=71.1
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEE-EeCC--CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIK-MHPQ--KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~-i~~~--kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
.....++|||+|||.++++++|+++|++||.|.+++ |+.+ .+.|||+|.+.++|++|++.|++ ..++|+.|+|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~V~~a 89 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNG-FQLENFTLKVAYI 89 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTT-CBCSSCBCEEEEC
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCC-CEECCcEEEEEEc
Confidence 344578999999999999999999999999999994 7765 34599999999999999999966 5999999999999
Q ss_pred CCCC
Q 048750 267 KPQT 270 (344)
Q Consensus 267 k~~~ 270 (344)
+++.
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9863
No 127
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=4.3e-15 Score=115.19 Aligned_cols=81 Identities=23% Similarity=0.345 Sum_probs=70.7
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHP--QKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~--~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
.+...++|||+|||.++++++|+++|++||.|..+ ... .+|||||+|.+.++|++|++.|++ ..++|+.|+|.|++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQG-AEIDGRSVSLYYTG 89 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTE-EEETTEEEEEEECS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEEEcC
Confidence 34568999999999999999999999999999877 222 278999999999999999999965 69999999999998
Q ss_pred CCCCC
Q 048750 268 PQTQR 272 (344)
Q Consensus 268 ~~~~~ 272 (344)
++...
T Consensus 90 ~~~~~ 94 (96)
T 1fjc_A 90 EKGGT 94 (96)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 86543
No 128
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=1.7e-14 Score=133.12 Aligned_cols=81 Identities=20% Similarity=0.421 Sum_probs=73.4
Q ss_pred CCCCCccEEEeccCCCCCCHHHHH----HHhhcCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLR----DNFYAHGEIESIKMHPQ---KAFAFVTYTTREGAEKAAEELSNKLVIKGLRL 261 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~----~~F~~fG~I~~v~i~~~---kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l 261 (344)
++....++|||+||+.++++++|+ ++|++||.|.+|++... +|||||+|.+.++|++|++.|++ ..+.|+.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l 82 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG-FPFYDKPM 82 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcC-CeeCCcEE
Confidence 455678999999999999999977 89999999999998873 79999999999999999999966 59999999
Q ss_pred EEEEcCCCC
Q 048750 262 KLMWGKPQT 270 (344)
Q Consensus 262 ~V~~ak~~~ 270 (344)
+|.|++...
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999998755
No 129
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2e-15 Score=115.33 Aligned_cols=78 Identities=26% Similarity=0.497 Sum_probs=68.2
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCCC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQ 271 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~~ 271 (344)
..++|||+|||.++++++|+++|++||.|.+++|+.+ +|||||+|.+.++|++|.. ..+.++|+.|+|.|++++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~---~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG---EDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT---CEEEETTEEEEEECCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc---CCceeCCEEEEEEecCCCCC
Confidence 4689999999999999999999999999999999876 8999999999999986532 23567999999999998765
Q ss_pred CC
Q 048750 272 RP 273 (344)
Q Consensus 272 ~~ 273 (344)
..
T Consensus 81 ~~ 82 (88)
T 1wf0_A 81 SN 82 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 130
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=5.3e-15 Score=120.80 Aligned_cols=78 Identities=21% Similarity=0.235 Sum_probs=69.9
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCE-EEEEeCCHHHHHHHHHHhCCCeEECC--eEEEEEEcCCC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAF-AFVTYTTREGAEKAAEELSNKLVIKG--LRLKLMWGKPQ 269 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~-aFV~F~~~~~A~~A~~~l~~~~~i~g--~~l~V~~ak~~ 269 (344)
....|||+||+..+++++|+++|++||.|.+|+|....|| |||+|.+.++|+.|++.|+|. .|.| +.|+|.|++++
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~-~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGA-DIYAGCCTLKIEYARPT 102 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTC-CCBTTBSEEEEECCSCS
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC-EecCCCeEEEEEEecCC
Confidence 3556889999999999999999999999999999877796 999999999999999999775 6766 69999999987
Q ss_pred CC
Q 048750 270 TQ 271 (344)
Q Consensus 270 ~~ 271 (344)
..
T Consensus 103 ~l 104 (124)
T 2e5i_A 103 RL 104 (124)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 131
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.59 E-value=7e-15 Score=120.80 Aligned_cols=80 Identities=19% Similarity=0.247 Sum_probs=71.5
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-CCE-EEEEeCCHHHHHHHHHHhCCCeEECC--eEEEEEEcC
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-KAF-AFVTYTTREGAEKAAEELSNKLVIKG--LRLKLMWGK 267 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-kg~-aFV~F~~~~~A~~A~~~l~~~~~i~g--~~l~V~~ak 267 (344)
.....|||+||+..+++++|+++|++||+|.+|+|..+ +|+ |||+|.+.++|++|++.|+|. .|.| +.|+|.|++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~-~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQ-NIYNACCTLRIDFSK 104 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTC-EEETTEEEEEEEECS
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCC-eecCCCcEEEEEecC
Confidence 45788999999999999999999999999999988765 677 999999999999999999775 6666 899999999
Q ss_pred CCCCC
Q 048750 268 PQTQR 272 (344)
Q Consensus 268 ~~~~~ 272 (344)
+....
T Consensus 105 ~~~l~ 109 (130)
T 3zzy_A 105 LTSLN 109 (130)
T ss_dssp CSSCC
T ss_pred CCcee
Confidence 87543
No 132
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=8.5e-15 Score=114.81 Aligned_cols=79 Identities=29% Similarity=0.542 Sum_probs=68.0
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
+...++|||+|||.++++++|+++|+.|+. +.++.+ +|||||+|.+.++|++|++.|++ ..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V~ 87 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED-GEIDGNKVTLD 87 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSE---EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeE---EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEE
Confidence 456799999999999999999999998864 444443 58999999999999999999966 59999999999
Q ss_pred EcCCCCCCC
Q 048750 265 WGKPQTQRP 273 (344)
Q Consensus 265 ~ak~~~~~~ 273 (344)
|++++....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2fc8_A 88 WAKPKGEGG 96 (102)
T ss_dssp ECCCCCSSS
T ss_pred EecCCCCCC
Confidence 999876543
No 133
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.8e-15 Score=116.21 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=70.5
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeE-EEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIES-IKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~-v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
.....++|||+|||.++++++|+++|++||.|.+ |+|+.+ +|||||+|.+.++|++|++. ++ ..++|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~-~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HK-ERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TT-CCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Cc-chhCCcEEEE
Confidence 3456789999999999999999999999999997 888754 79999999999999999986 54 6999999999
Q ss_pred EEcCCCCC
Q 048750 264 MWGKPQTQ 271 (344)
Q Consensus 264 ~~ak~~~~ 271 (344)
.++.++..
T Consensus 89 ~~~~~~~~ 96 (104)
T 1wg5_A 89 FKSSRAEV 96 (104)
T ss_dssp EEECTTTS
T ss_pred EECCHHHH
Confidence 99876543
No 134
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=7.4e-16 Score=114.44 Aligned_cols=70 Identities=20% Similarity=0.416 Sum_probs=65.8
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
++|||+|||.++++++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.++ ..++|+.|+|+||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~--~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR--HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT--CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC--CccCCEEEEEEec
Confidence 47999999999999999999999999999999875 6899999999999999999884 6999999999997
No 135
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-15 Score=119.81 Aligned_cols=78 Identities=21% Similarity=0.274 Sum_probs=68.0
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHP------QKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~------~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
...++|||+|||.++++++|+++|++||.|.+ .++. .+|||||+|.+.++|++|++ |++ ..++|+.|+|.|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g-~~~~g~~l~V~~ 91 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTG-LKVFGNEIKLEK 91 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGG-CCBTTBCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCC-cEECCcEEEEEE
Confidence 45789999999999999999999999998776 3333 38999999999999999998 865 589999999999
Q ss_pred cCCCCCC
Q 048750 266 GKPQTQR 272 (344)
Q Consensus 266 ak~~~~~ 272 (344)
++++..+
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9986544
No 136
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=4.9e-16 Score=119.15 Aligned_cols=75 Identities=21% Similarity=0.418 Sum_probs=66.0
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCC
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKP 268 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~ 268 (344)
++|||+|||.++++++|+++|++||.|.++.+..+ +|||||+|.+.+ |++|+..|++ ..++|+.|+|+||.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g-~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDN-TDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCS-SCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCC-CEECCeEEEEEEcCC
Confidence 68999999999999999999999999999999875 689999999999 9999999966 589999999999987
Q ss_pred CCC
Q 048750 269 QTQ 271 (344)
Q Consensus 269 ~~~ 271 (344)
...
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 137
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=1.2e-15 Score=112.82 Aligned_cols=69 Identities=22% Similarity=0.415 Sum_probs=63.9
Q ss_pred EEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 196 tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
+|||+|||.++++++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++ +++ ..++|+.|+|+||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~-~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHF-HEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSC-CCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCC-CEECCEEEEEEeC
Confidence 5899999999999999999999999999999875 5899999999999999998 755 6999999999986
No 138
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=1.6e-15 Score=117.28 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=67.1
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
..++|||+|||.++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g-~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND-RPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCC-CeECCcEEEEEec
Confidence 4689999999999999999999999999988777652 68999999999999999999966 5999999999998
Q ss_pred CC
Q 048750 267 KP 268 (344)
Q Consensus 267 k~ 268 (344)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 139
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.58 E-value=4.8e-15 Score=119.92 Aligned_cols=78 Identities=10% Similarity=0.104 Sum_probs=70.3
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCC---eeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGE---IESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLR 260 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~---I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~ 260 (344)
+.....++|||+|||.++++++|+++|+.||. |.+|+|+.+ +|||||+|.+.++|++|++ +++ ..|+|+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g-~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDR-ESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTT-EEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCC-CeECCeE
Confidence 34556789999999999999999999999999 899999875 6899999999999999999 855 6999999
Q ss_pred EEEEEcCC
Q 048750 261 LKLMWGKP 268 (344)
Q Consensus 261 l~V~~ak~ 268 (344)
|+|.++..
T Consensus 90 i~V~~a~~ 97 (118)
T 2db1_A 90 IEVFKSHR 97 (118)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99999864
No 140
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=6.4e-15 Score=111.93 Aligned_cols=72 Identities=28% Similarity=0.547 Sum_probs=67.4
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcC----C-------CeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAH----G-------EIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLR 260 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~f----G-------~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~ 260 (344)
...++|||+|||.++++++|+++|++| | .|.++++..++|||||+|.+.++|++|+ .|++ ..++|+.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g-~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDG-IIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTT-CEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCC-CEECCeE
Confidence 457899999999999999999999999 8 9999999999999999999999999999 8965 5999999
Q ss_pred EEEEE
Q 048750 261 LKLMW 265 (344)
Q Consensus 261 l~V~~ 265 (344)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99974
No 141
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.4e-15 Score=118.30 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=68.6
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCe-eEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEI-ESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I-~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
...++|||+|||.++++++|+++|+.||.| .+|+|+.+ +|||||+|.+.++|++|++. ++..|+|+.|+|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~--~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL--HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG--CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh--CCCccCCeEEEEEE
Confidence 457899999999999999999999999999 88999864 79999999999999999985 55799999999999
Q ss_pred cCC
Q 048750 266 GKP 268 (344)
Q Consensus 266 ak~ 268 (344)
+.+
T Consensus 91 a~~ 93 (114)
T 2cpy_A 91 VTL 93 (114)
T ss_dssp ECH
T ss_pred CCH
Confidence 975
No 142
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.56 E-value=1.5e-14 Score=128.24 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=71.4
Q ss_pred CccEEEeccCC-CCCCHHHHHHHhhcCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCC
Q 048750 193 SIKTLYVGGVD-ARITEQDLRDNFYAHGEIESIKMHPQ-KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 193 ~~~tLfVgnL~-~~~te~~L~~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~ 270 (344)
..++|||+||+ ..+++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|+.|++.|++ ..+.|+.|+|.|++...
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng-~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNN-NFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTT-CEETTEECEEEECSCSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCC-CEECCceEEEEEccCCc
Confidence 36899999999 89999999999999999999999986 79999999999999999999966 59999999999998654
No 143
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.55 E-value=3.9e-16 Score=140.95 Aligned_cols=76 Identities=24% Similarity=0.314 Sum_probs=69.1
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCC--CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHG--EIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG--~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
..++|||+||+.++++++|+++|++|| .|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..|+|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng-~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK-RELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTT-SCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC-CeECCEEeEEE
Confidence 467999999999999999999999999 9999999876 58999999999999999999966 59999999999
Q ss_pred EcCCC
Q 048750 265 WGKPQ 269 (344)
Q Consensus 265 ~ak~~ 269 (344)
|+++.
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 99753
No 144
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.55 E-value=8.9e-15 Score=122.03 Aligned_cols=81 Identities=22% Similarity=0.334 Sum_probs=69.2
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeE--------EEEe---CCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIES--------IKMH---PQKAFAFVTYTTREGAEKAAEELSNKLVIKGLR 260 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~--------v~i~---~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~ 260 (344)
...++|||+|||.++++++|+++|++||.|.+ +++. ..+|||||+|.+.++|++|++.|++ ..++|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng-~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANG-YVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTT-BEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCC-CEeCCcE
Confidence 34689999999999999999999999999876 3333 2378999999999999999999966 5999999
Q ss_pred EEEEEcCCCCCCC
Q 048750 261 LKLMWGKPQTQRP 273 (344)
Q Consensus 261 l~V~~ak~~~~~~ 273 (344)
|+|.|+++...+.
T Consensus 122 l~V~~a~~~~~~~ 134 (143)
T 3egn_A 122 MVVQFARSARPKQ 134 (143)
T ss_dssp CEEEECCCSCC--
T ss_pred EEEEECCCCCCcc
Confidence 9999998866554
No 145
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.55 E-value=3.4e-15 Score=112.34 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=62.2
Q ss_pred cEEEeccCCCCC------CHHHHHHHhhcCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeEECCe-EEEE
Q 048750 195 KTLYVGGVDARI------TEQDLRDNFYAHGEIESIKMHPQ----KAFAFVTYTTREGAEKAAEELSNKLVIKGL-RLKL 263 (344)
Q Consensus 195 ~tLfVgnL~~~~------te~~L~~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~-~l~V 263 (344)
++|||+|||..+ ++++|+++|++||.|.++.+... +|||||+|.+.++|++|++.|++ ..++|+ .|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng-~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADG-YKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSS-CCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcC-cccCCceeEEe
Confidence 689999999999 77999999999999999998843 79999999999999999999966 589998 8876
No 146
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.55 E-value=6.9e-15 Score=122.15 Aligned_cols=78 Identities=10% Similarity=0.084 Sum_probs=70.6
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCC---eeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGE---IESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLR 260 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~---I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~ 260 (344)
+.....++|||+|||.++++++|+++|++||. |.+|+|+.+ +|||||+|.+.++|++|++ +++ ..++|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g-~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDR-ESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTE-EESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCC-CEECCEE
Confidence 44567899999999999999999999999999 899999875 6899999999999999999 855 6999999
Q ss_pred EEEEEcCC
Q 048750 261 LKLMWGKP 268 (344)
Q Consensus 261 l~V~~ak~ 268 (344)
|+|.++.+
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99999864
No 147
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.53 E-value=5e-15 Score=116.20 Aligned_cols=78 Identities=26% Similarity=0.483 Sum_probs=70.1
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
+...++|||+|||.++++++|+++|++||.|.+++|+.+ +|||||+|.+.++|++|++ ++..++|+.|.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~---~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE---SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT---CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh---CCCeECCEEEEEEE
Confidence 445789999999999999999999999999999999885 6899999999999999997 45699999999999
Q ss_pred cCCCCC
Q 048750 266 GKPQTQ 271 (344)
Q Consensus 266 ak~~~~ 271 (344)
+.++..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 987543
No 148
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.7e-14 Score=113.26 Aligned_cols=77 Identities=13% Similarity=0.210 Sum_probs=68.4
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
|......+|||+|||.++++++|+++|+.| .|.+|+|+.+ +|||||+|.+.++|++|+ .++ +..++|+.|.|
T Consensus 11 ~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~-~~~~~gr~i~V 87 (109)
T 2dnn_A 11 PINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRN-RMLMIQRYVEV 87 (109)
T ss_dssp CCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTT-TEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcC-CCeECCeEEEE
Confidence 344557899999999999999999999999 8999999875 799999999999999999 575 46999999999
Q ss_pred EEcCC
Q 048750 264 MWGKP 268 (344)
Q Consensus 264 ~~ak~ 268 (344)
..+.+
T Consensus 88 ~~a~~ 92 (109)
T 2dnn_A 88 SPATE 92 (109)
T ss_dssp EECCH
T ss_pred EECCc
Confidence 98753
No 149
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.9e-14 Score=109.00 Aligned_cols=74 Identities=22% Similarity=0.267 Sum_probs=65.3
Q ss_pred ccEEEeccCCCCCCHHH----HHHHhhcC-CCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCC
Q 048750 194 IKTLYVGGVDARITEQD----LRDNFYAH-GEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKP 268 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~----L~~~F~~f-G~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~ 268 (344)
.+.|||+|||+.+++++ |+++|++| |+|.+|. .|+|||+|.+.++|++|++.|+| ..+.||+|+|.||+.
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G-~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMEN-EDVFGNRIIVSFTPK 83 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTT-CCSSSSCCEEESSCC
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcC-CccCCceEEEEecCC
Confidence 44499999999999987 56899999 5999983 49999999999999999999976 599999999999998
Q ss_pred CCCC
Q 048750 269 QTQR 272 (344)
Q Consensus 269 ~~~~ 272 (344)
+..-
T Consensus 84 ~sd~ 87 (96)
T 2diu_A 84 NREL 87 (96)
T ss_dssp SCCC
T ss_pred Ccce
Confidence 6543
No 150
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.3e-14 Score=112.98 Aligned_cols=77 Identities=18% Similarity=0.169 Sum_probs=68.1
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
...++|||+|||.++++++|+++|++||. .+|+|+.+ +|||||+|.+.++|++|++ ++ +..++|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~-~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KD-KANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TS-SCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hC-CCeECCcEEEEEEC
Confidence 45789999999999999999999999994 59999875 6899999999999999995 64 46999999999998
Q ss_pred CCCCC
Q 048750 267 KPQTQ 271 (344)
Q Consensus 267 k~~~~ 271 (344)
.+...
T Consensus 90 ~~~~~ 94 (102)
T 1wez_A 90 STAGT 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87553
No 151
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=6.8e-16 Score=124.24 Aligned_cols=80 Identities=20% Similarity=0.309 Sum_probs=72.4
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeE--------EEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEEC
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIES--------IKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIK 257 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~--------v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~ 257 (344)
...++|||+|||.++++++|+++|++||.|.+ |+|+.+ +|||||+|.+.++|++|++.|++ ..++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG-KEFS 83 (116)
Confidence 45789999999999999999999999999998 888765 68999999999999999999966 5899
Q ss_pred CeEEEEEEcCCCCCC
Q 048750 258 GLRLKLMWGKPQTQR 272 (344)
Q Consensus 258 g~~l~V~~ak~~~~~ 272 (344)
|+.|+|+|++++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999986544
No 152
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.52 E-value=7.1e-15 Score=116.71 Aligned_cols=76 Identities=12% Similarity=0.088 Sum_probs=69.2
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCC---eeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGE---IESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~---I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
.....+|||+|||.++++++|+++|+.||. |.+|+|+.+ +|||||+|.+.++|++|++ +++ ..++|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~-~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHR-MYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTT-CCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCc-ceeCCeEEE
Confidence 456789999999999999999999999998 899999875 7899999999999999999 855 689999999
Q ss_pred EEEcCC
Q 048750 263 LMWGKP 268 (344)
Q Consensus 263 V~~ak~ 268 (344)
|.++.+
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 999875
No 153
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.52 E-value=4.9e-15 Score=109.46 Aligned_cols=69 Identities=25% Similarity=0.481 Sum_probs=63.4
Q ss_pred EEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 196 TLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 196 tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
+|||+|||.++++++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++. ++ ..++|+.|+|+||
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~-~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KY-HNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SS-CCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CC-CeECCEEEEEEEC
Confidence 5899999999999999999999999999999764 78999999999999999984 44 6899999999986
No 154
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.52 E-value=5.9e-14 Score=118.42 Aligned_cols=76 Identities=30% Similarity=0.499 Sum_probs=71.0
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCC------CEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQK------AFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~k------g~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
.++|||+|||.++++++|+++|++||.|.++.++.++ |||||+|.+.++|++|++.|++ ..++|+.|+|.|++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~-~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG-LRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCC-CccCCceEEEEecC
Confidence 5899999999999999999999999999999998874 8999999999999999999966 59999999999998
Q ss_pred CCC
Q 048750 268 PQT 270 (344)
Q Consensus 268 ~~~ 270 (344)
+..
T Consensus 81 ~~~ 83 (167)
T 1fxl_A 81 PSS 83 (167)
T ss_dssp CCC
T ss_pred CCc
Confidence 754
No 155
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.52 E-value=2.6e-14 Score=127.04 Aligned_cols=75 Identities=27% Similarity=0.470 Sum_probs=70.0
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
..+|||+||+.++++++|+++|++||.|.+++|+.+ +|||||+|.+.++|++|++.|++ ..|+|+.|+|.|++++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng-~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG-MLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEECCCH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCC-CEECCEEEEEEEcCCC
Confidence 568999999999999999999999999999999875 78999999999999999999966 5999999999999874
No 156
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.51 E-value=5.3e-14 Score=125.01 Aligned_cols=77 Identities=30% Similarity=0.569 Sum_probs=70.2
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
+.++|||+|||.+++|++|+++|++||+|.+|+|+.+ +|||||+|.+.++|++|++.+++ ..+.|+.|+|.|+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~-~~~~g~~i~~~~~ 92 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF-DVIKGKPVRIMWS 92 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhh-hhcCCcccccccc
Confidence 4689999999999999999999999999999999875 57999999999999999999966 5999999999998
Q ss_pred CCCC
Q 048750 267 KPQT 270 (344)
Q Consensus 267 k~~~ 270 (344)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7643
No 157
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.51 E-value=8.1e-14 Score=117.46 Aligned_cols=77 Identities=19% Similarity=0.463 Sum_probs=70.6
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
....++|||+|||.++++++|+++|++||.|.++.+..+ +|+|||+|.+.++|++|++.|++ ..++|+.|+|.
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~i~v~ 162 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG-QDLNGRPLRIN 162 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-CccCCcEEEEE
Confidence 345789999999999999999999999999999999865 67999999999999999999966 58999999999
Q ss_pred EcCC
Q 048750 265 WGKP 268 (344)
Q Consensus 265 ~ak~ 268 (344)
|+++
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9874
No 158
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.51 E-value=7e-14 Score=118.37 Aligned_cols=78 Identities=24% Similarity=0.448 Sum_probs=71.4
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
+.++|||+|||.++++++|+++|++||.|.+++++.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~-~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNG-ITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCC-CEeCCcEEEEEec
Confidence 3689999999999999999999999999999999875 58999999999999999999966 5999999999999
Q ss_pred CCCCC
Q 048750 267 KPQTQ 271 (344)
Q Consensus 267 k~~~~ 271 (344)
++...
T Consensus 81 ~~~~~ 85 (168)
T 1b7f_A 81 RPGGE 85 (168)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87653
No 159
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.51 E-value=3.7e-14 Score=122.94 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=71.6
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
...++|||+||+.++++++|+++|++||.|.+|.|..+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.|+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng-~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKG-VPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTT-CBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCC-CEECCEEEEEEEe
Confidence 45789999999999999999999999999999999875 69999999999999999999966 5999999999999
Q ss_pred CCCC
Q 048750 267 KPQT 270 (344)
Q Consensus 267 k~~~ 270 (344)
.+..
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 8643
No 160
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1e-14 Score=118.79 Aligned_cols=76 Identities=12% Similarity=0.060 Sum_probs=66.4
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeC-C-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHP-Q-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~-~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
....++|||+|||.++++++|+++|+.||.|.++.++. + +|||||+|.+.++|++|++ |++ ..|+|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g-~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHK-QYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCS-BCSTTSCBEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCC-CeECCcEEEEE
Confidence 34568999999999999999999999999998743332 1 7899999999999999999 855 69999999999
Q ss_pred EcCC
Q 048750 265 WGKP 268 (344)
Q Consensus 265 ~ak~ 268 (344)
|+.+
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9975
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.1e-13 Score=116.62 Aligned_cols=76 Identities=33% Similarity=0.504 Sum_probs=70.1
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
++|||+|||.++++++|+++|++||.|.+|+++.+ +|||||+|.+.++|++|++.+++ ..+.|+.|+|.|+.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNG-KQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCC-CccCCCeeEEEEcCCC
Confidence 58999999999999999999999999999999876 48999999999999999999966 5999999999999876
Q ss_pred CC
Q 048750 270 TQ 271 (344)
Q Consensus 270 ~~ 271 (344)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 162
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.49 E-value=1e-13 Score=120.58 Aligned_cols=79 Identities=15% Similarity=0.394 Sum_probs=73.2
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
...++|||+|||.++++++|+++|++||.|.++++..+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG-MQLGDKKLLVQR 190 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTT-CEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCC-CEECCEEEEEEE
Confidence 45789999999999999999999999999999999876 68999999999999999999966 599999999999
Q ss_pred cCCCCC
Q 048750 266 GKPQTQ 271 (344)
Q Consensus 266 ak~~~~ 271 (344)
++++..
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 998654
No 163
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.48 E-value=1.1e-13 Score=122.04 Aligned_cols=77 Identities=19% Similarity=0.435 Sum_probs=71.4
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
..++|||+||+.++++++|+++|++||.|.+++|..+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.|+
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g-~~~~g~~i~V~~a 202 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNL-FDLGGQYLRVGKA 202 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CBCSSSBCEEEEC
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccC-CEeCCcEEEEEEe
Confidence 4689999999999999999999999999999999876 68999999999999999999976 5899999999999
Q ss_pred CCCC
Q 048750 267 KPQT 270 (344)
Q Consensus 267 k~~~ 270 (344)
++..
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8753
No 164
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.47 E-value=1.6e-13 Score=135.08 Aligned_cols=78 Identities=28% Similarity=0.405 Sum_probs=72.2
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
..++|||+||+..+++++|.++|++||.|..|.|+.+ +|||||+|.+.++|++|++.|++ ..|+|+.|.|.|+
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng-~~i~gr~i~V~~a 179 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADG-KKIDGRRVLVDVE 179 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCC-CEECCEEEEEEEe
Confidence 4689999999999999999999999999999999875 79999999999999999999966 5999999999999
Q ss_pred CCCCC
Q 048750 267 KPQTQ 271 (344)
Q Consensus 267 k~~~~ 271 (344)
++...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 97654
No 165
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.47 E-value=1.7e-14 Score=120.15 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=68.5
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
....++|||+|||.+++|++|+++|++|| |++|+|+.+ +|||||+|.+.++|++|+ .+++ ..++|+.|+|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g-~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDR-ANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCS-CSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCC-CEECCEEEEEEE
Confidence 34578999999999999999999999999 779999875 789999999999999999 6754 699999999999
Q ss_pred cCCCCC
Q 048750 266 GKPQTQ 271 (344)
Q Consensus 266 ak~~~~ 271 (344)
+.+...
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 887554
No 166
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.47 E-value=1.4e-13 Score=119.51 Aligned_cols=80 Identities=24% Similarity=0.439 Sum_probs=70.6
Q ss_pred CCCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 189 PEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 189 p~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
++....++|||+|||.++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++. ++ ..++|+.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~-~~~~g~~l~ 85 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RP-HKVDGRVVE 85 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CS-CEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CC-CEECCEEee
Confidence 34566899999999999999999999999999999999875 57999999999999999975 34 699999999
Q ss_pred EEEcCCCC
Q 048750 263 LMWGKPQT 270 (344)
Q Consensus 263 V~~ak~~~ 270 (344)
|.|+.+..
T Consensus 86 v~~~~~~~ 93 (196)
T 1l3k_A 86 PKRAVSRE 93 (196)
T ss_dssp EEECCC--
T ss_pred eecccCcc
Confidence 99998754
No 167
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.47 E-value=1.8e-13 Score=126.27 Aligned_cols=76 Identities=18% Similarity=0.315 Sum_probs=70.7
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCC-CEEEEEeCCHHHHHHHHHHhCCCeEEC-CeEEEEEEcC
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQK-AFAFVTYTTREGAEKAAEELSNKLVIK-GLRLKLMWGK 267 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~k-g~aFV~F~~~~~A~~A~~~l~~~~~i~-g~~l~V~~ak 267 (344)
....++|||+||+.++++++|+++|++||.|.+|+|+.++ |||||+|.+.++|++|++.|++ ..++ |+.|+|.|++
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQG-FKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCC-cEeCCCCEEEEEEec
Confidence 4457899999999999999999999999999999999886 9999999999999999999977 4777 9999999987
No 168
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=109.95 Aligned_cols=73 Identities=16% Similarity=0.349 Sum_probs=64.1
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC---------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ---------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~---------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
...++|||+|||.++++++|+++|++||.|. +.++.+ +|||||+|.+.++|++|++.| ..++|+.|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~---~~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC---LEEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS---EEETTEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh---hhcCCcEEE
Confidence 4578999999999999999999999999999 777642 789999999999999999988 258999998
Q ss_pred EEEcCC
Q 048750 263 LMWGKP 268 (344)
Q Consensus 263 V~~ak~ 268 (344)
|..+.+
T Consensus 82 ~~~~~~ 87 (114)
T 2dnl_A 82 CVSSPT 87 (114)
T ss_dssp EECCSS
T ss_pred eccCCC
Confidence 886554
No 169
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.46 E-value=3.4e-13 Score=123.56 Aligned_cols=78 Identities=26% Similarity=0.423 Sum_probs=72.7
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCC
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~ 270 (344)
...++|||+|||.++++++|+++|++||.|.+|.+..++|||||+|.+.++|++|+..+++ ..++|+.|+|.|+.+..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g-~~i~g~~l~v~~a~~~~ 97 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDG-TILKSRPLRIRFATHGA 97 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTT-CEETTEECEEEECCCSS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCC-cEECCceeEeeecccCC
Confidence 4578999999999999999999999999999999999999999999999999999999966 59999999999998643
No 170
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.45 E-value=1e-13 Score=117.42 Aligned_cols=74 Identities=18% Similarity=0.474 Sum_probs=68.7
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
.++|||+|||.++++++|+++|++||.|.++++..+ +|||||+|.+.++|++|++ + ++..++|+.|+|.|++
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~-~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-N-KFIDFKDRKIEIKRAE 164 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-C-SEECSSSSCEEEEECC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-C-CCEEeCCeEEEEeecC
Confidence 569999999999999999999999999999999875 5799999999999999998 6 5579999999999998
Q ss_pred CC
Q 048750 268 PQ 269 (344)
Q Consensus 268 ~~ 269 (344)
|+
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 171
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.45 E-value=2.4e-13 Score=122.10 Aligned_cols=78 Identities=23% Similarity=0.295 Sum_probs=72.5
Q ss_pred CCccEEEeccCCC-CCCHHHHHHHhhcCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 192 ESIKTLYVGGVDA-RITEQDLRDNFYAHGEIESIKMHPQ-KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 192 ~~~~tLfVgnL~~-~~te~~L~~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
...++|||+|||. ++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.|+++.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g-~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNG-HKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTT-CBCSSSBCEEECCSCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEEEecCc
Confidence 4578999999999 9999999999999999999999988 59999999999999999999966 5899999999999876
Q ss_pred C
Q 048750 270 T 270 (344)
Q Consensus 270 ~ 270 (344)
.
T Consensus 111 ~ 111 (229)
T 2adc_A 111 N 111 (229)
T ss_dssp C
T ss_pred c
Confidence 4
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.45 E-value=2e-13 Score=116.21 Aligned_cols=75 Identities=25% Similarity=0.446 Sum_probs=68.5
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEEC--CeEEEEEE
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIK--GLRLKLMW 265 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~--g~~l~V~~ 265 (344)
..++|||+|||.++++++|+++|++||.|.++++..+ +|||||+|.+.++|++|++.|++..+.+ |++|+|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 5789999999999999999999999999999999886 7899999999999999999998765555 49999999
Q ss_pred cC
Q 048750 266 GK 267 (344)
Q Consensus 266 ak 267 (344)
|.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 173
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.45 E-value=1.8e-13 Score=116.44 Aligned_cols=74 Identities=15% Similarity=0.403 Sum_probs=69.0
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
..++|||+|||.++++++|+++|++||.|.++.+..+ +|+|||+|.+.++|++|++.|++ ..++|+.|+|+||
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG-MQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTT-CEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCC-CEECCeEEEEEeC
Confidence 3689999999999999999999999999999999886 58999999999999999999966 5999999999997
Q ss_pred C
Q 048750 267 K 267 (344)
Q Consensus 267 k 267 (344)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 174
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.44 E-value=2.4e-13 Score=118.10 Aligned_cols=80 Identities=25% Similarity=0.477 Sum_probs=67.8
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
...++|||+|||.++++++|+++|++||.|.+++|+.+ +|||||+|.+.++|++|++. ++ ..++|+.|.|.|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~-~~~~G~~i~v~~ 179 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KY-HTVNGHNCEVRK 179 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SC-CEETTEECEEEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CC-cEECCEEEEEEe
Confidence 34689999999999999999999999999999999875 68999999999999999985 44 699999999999
Q ss_pred cCCCCCCC
Q 048750 266 GKPQTQRP 273 (344)
Q Consensus 266 ak~~~~~~ 273 (344)
+.++....
T Consensus 180 a~~k~~~~ 187 (196)
T 1l3k_A 180 ALSKQEMA 187 (196)
T ss_dssp CC------
T ss_pred cCChhHhc
Confidence 99876543
No 175
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.43 E-value=1.6e-13 Score=112.33 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=66.2
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCee--EEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIE--SIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~--~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
...++|||+|||+++++++|+++|+.| .|. +|+|+.+ +|||||+|.+.++|++|++. ++ ..|+|+.|+|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~-~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HK-ERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TT-CCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CC-CEECCEEEEEE
Confidence 456889999999999999999999999 677 8999875 79999999999999999985 45 69999999999
Q ss_pred EcCC
Q 048750 265 WGKP 268 (344)
Q Consensus 265 ~ak~ 268 (344)
++.+
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8864
No 176
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.2e-12 Score=103.04 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=67.3
Q ss_pred CCccEEEeccCCCCC-----------CHHHHHHHhhcCCCeeEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCeEECC
Q 048750 192 ESIKTLYVGGVDARI-----------TEQDLRDNFYAHGEIESIKMHP--QKAFAFVTYTTREGAEKAAEELSNKLVIKG 258 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~-----------te~~L~~~F~~fG~I~~v~i~~--~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g 258 (344)
...++|+|.||.... .+++|+++|++||.|.+|.|.. .+|||||+|.+.++|++|++.|++ ..++|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng-~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDG-RWFGG 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTT-CEETT
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCC-CEECC
Confidence 357899999994332 2589999999999999997753 289999999999999999999966 58999
Q ss_pred eEEEEEEcCCCCC
Q 048750 259 LRLKLMWGKPQTQ 271 (344)
Q Consensus 259 ~~l~V~~ak~~~~ 271 (344)
+.|+|.|+.+...
T Consensus 92 r~l~v~~a~~~~~ 104 (112)
T 2dit_A 92 RQITAQAWDGTTD 104 (112)
T ss_dssp EECEEEECCSCCC
T ss_pred cEEEEEEeCCCCC
Confidence 9999999988654
No 177
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.43 E-value=3.3e-13 Score=118.52 Aligned_cols=76 Identities=21% Similarity=0.343 Sum_probs=68.7
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
..++|||+|||.++++++|+++|++||.|.+|+|..+ +|||||+|.+.++|++|++.+ +. .++|+.|.|.|++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~-~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQ-KYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TC-EETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CC-eECCEEEEEEEhH
Confidence 3689999999999999999999999999999999864 799999999999999999866 54 8999999999987
Q ss_pred CCC
Q 048750 268 PQT 270 (344)
Q Consensus 268 ~~~ 270 (344)
.-.
T Consensus 186 ~y~ 188 (193)
T 2voo_A 186 DYF 188 (193)
T ss_dssp TC-
T ss_pred HHH
Confidence 643
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.42 E-value=5.6e-13 Score=113.90 Aligned_cols=76 Identities=25% Similarity=0.386 Sum_probs=68.2
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEe--CCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMH--PQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~--~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
...++|||+|||.++++++|+++|++||.|..+ .. ..+|||||+|.+.++|++|++.|++ ..++|+.|+|+|++++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQG-AEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTE-EEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEEecCCC
Confidence 457899999999999999999999999999887 21 1389999999999999999999966 6999999999999875
No 179
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.42 E-value=4.4e-13 Score=120.37 Aligned_cols=76 Identities=21% Similarity=0.364 Sum_probs=70.6
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCC-CeeEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCeEEC-CeEEEEEEcCCC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHG-EIESIKMHP-QKAFAFVTYTTREGAEKAAEELSNKLVIK-GLRLKLMWGKPQ 269 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG-~I~~v~i~~-~kg~aFV~F~~~~~A~~A~~~l~~~~~i~-g~~l~V~~ak~~ 269 (344)
..++|||+||+.++++++|+++|++|| .|.+|+++. ++|+|||+|.+.++|++|++.|++. .++ |+.|+|.|++++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNH-DLGENHHLRVSFSKST 228 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTC-BSSSSCBCEEEECSSC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCC-ccCCCCeEEEEEecCC
Confidence 468999999999999999999999999 999999966 6999999999999999999999775 778 999999999874
No 180
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.42 E-value=6.9e-13 Score=112.76 Aligned_cols=76 Identities=26% Similarity=0.507 Sum_probs=70.2
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcC----C-------CeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEE
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAH----G-------EIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRL 261 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~f----G-------~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l 261 (344)
..++|||+|||.++++++|+++|++| | .|.++.+..++|||||+|.+.++|++|+ .+++ ..++|+.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~-~~~~g~~i 80 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDG-IIFQGQSL 80 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTT-CEETTEEC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCC-cEecCcee
Confidence 46899999999999999999999999 7 8999999999999999999999999999 7855 69999999
Q ss_pred EEEEcCCCC
Q 048750 262 KLMWGKPQT 270 (344)
Q Consensus 262 ~V~~ak~~~ 270 (344)
+|.|+++..
T Consensus 81 ~v~~~~~~~ 89 (172)
T 2g4b_A 81 KIRRPHDYQ 89 (172)
T ss_dssp EEECCSSCC
T ss_pred eecCCcccC
Confidence 999987654
No 181
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.42 E-value=2.8e-13 Score=118.28 Aligned_cols=76 Identities=21% Similarity=0.364 Sum_probs=70.7
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCC-CeeEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCeEEC-CeEEEEEEcCCC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHG-EIESIKMHP-QKAFAFVTYTTREGAEKAAEELSNKLVIK-GLRLKLMWGKPQ 269 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG-~I~~v~i~~-~kg~aFV~F~~~~~A~~A~~~l~~~~~i~-g~~l~V~~ak~~ 269 (344)
+.++|||+|||.++++++|+++|++|| .|.+++++. ++|+|||+|.+.++|++|++.|++. .++ |+.|+|.|++++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNH-DLGENHHLRVSFSKST 197 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSS-CCSSCCSCCEEEECCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCC-ccCCCCeEEEEeeccc
Confidence 478999999999999999999999999 999999966 6899999999999999999999775 778 999999999874
No 182
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.1e-13 Score=112.86 Aligned_cols=75 Identities=20% Similarity=0.211 Sum_probs=66.1
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCe----eEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEI----ESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLK 262 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I----~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~ 262 (344)
....+|||+|||+++++++|+++|++||.| .+|+|+.+ +|||||+|.+.++|++|++. ++ ..++|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~-~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HK-DLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TT-EESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CC-CeeCCeEEE
Confidence 346899999999999999999999999975 68888864 68999999999999999985 44 699999999
Q ss_pred EEEcCC
Q 048750 263 LMWGKP 268 (344)
Q Consensus 263 V~~ak~ 268 (344)
|..+.+
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998754
No 183
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.42 E-value=2.2e-13 Score=119.04 Aligned_cols=76 Identities=24% Similarity=0.301 Sum_probs=71.2
Q ss_pred ccEEEeccCCC-CCCHHHHHHHhhcCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCC
Q 048750 194 IKTLYVGGVDA-RITEQDLRDNFYAHGEIESIKMHPQ-KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQT 270 (344)
Q Consensus 194 ~~tLfVgnL~~-~~te~~L~~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~ 270 (344)
.++|||+|||. ++++++|+++|++||.|.+|+++.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.|+++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNG-HKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTT-CCCSSCCCEEEECCCCS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCC-CeecCeEEEEEEecCCC
Confidence 58999999999 9999999999999999999999988 69999999999999999999966 58999999999998764
No 184
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.41 E-value=1.2e-12 Score=103.72 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=65.9
Q ss_pred CccEEEeccCCC--C---CCHHHHHHHhhcCCCeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeE
Q 048750 193 SIKTLYVGGVDA--R---ITEQDLRDNFYAHGEIESIKMHPQ-------KAFAFVTYTTREGAEKAAEELSNKLVIKGLR 260 (344)
Q Consensus 193 ~~~tLfVgnL~~--~---~te~~L~~~F~~fG~I~~v~i~~~-------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~ 260 (344)
..++|+|.|+.. + -++++|+++|++||.|.+|.|..+ +|||||+|.+.++|++|++.|+|. .++||.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~-~~~Gr~ 85 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR-YFGGRV 85 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC-EETTEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC-EECCcE
Confidence 468999999952 2 368999999999999999999853 689999999999999999999775 999999
Q ss_pred EEEEEcCC
Q 048750 261 LKLMWGKP 268 (344)
Q Consensus 261 l~V~~ak~ 268 (344)
|.|.|+.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 185
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.41 E-value=5.7e-13 Score=117.49 Aligned_cols=77 Identities=30% Similarity=0.481 Sum_probs=69.6
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
..++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++ ..++|+.|+|.|+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~-~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNS-VMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSS-CCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccC-CeeCCeeEEEecC
Confidence 4689999999999999999999999999999999764 79999999999999999999966 5899999999998
Q ss_pred CCCC
Q 048750 267 KPQT 270 (344)
Q Consensus 267 k~~~ 270 (344)
....
T Consensus 106 ~~~~ 109 (216)
T 2qfj_A 106 SNIG 109 (216)
T ss_dssp SCCG
T ss_pred CCcc
Confidence 7643
No 186
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.40 E-value=9.2e-13 Score=111.41 Aligned_cols=74 Identities=28% Similarity=0.386 Sum_probs=68.0
Q ss_pred CCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECC--eEEEE
Q 048750 192 ESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKG--LRLKL 263 (344)
Q Consensus 192 ~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g--~~l~V 263 (344)
...++|||+|||..+++++|+++|++||.|.++.+..+ +|+|||+|.+.++|++|++.|++. .++| ++|+|
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~~~l~V 165 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV-IPEGGSQPLSV 165 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-CCTTCSSCCEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC-EecCCCeEEEE
Confidence 34689999999999999999999999999999999876 389999999999999999999774 8877 99999
Q ss_pred EEc
Q 048750 264 MWG 266 (344)
Q Consensus 264 ~~a 266 (344)
+||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 996
No 187
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.39 E-value=5.1e-13 Score=113.04 Aligned_cols=74 Identities=18% Similarity=0.459 Sum_probs=67.5
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
+.++|||+|||.++++++|+++|++||.|.+|+++.+ +|||||+|.+.++|++|++. ...++|+.|.|.|+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~---~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT---QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS---CCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc---ccccCCeEcccccc
Confidence 4689999999999999999999999999999999875 58999999999999999984 35899999999998
Q ss_pred CCC
Q 048750 267 KPQ 269 (344)
Q Consensus 267 k~~ 269 (344)
.+.
T Consensus 79 ~~~ 81 (167)
T 2cjk_A 79 IPR 81 (167)
T ss_dssp CCH
T ss_pred cch
Confidence 753
No 188
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.39 E-value=1.3e-12 Score=113.64 Aligned_cols=76 Identities=25% Similarity=0.492 Sum_probs=69.6
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcC----C-------CeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEE
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAH----G-------EIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRL 261 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~f----G-------~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l 261 (344)
..++|||+|||.++++++|+++|++| | .|.++.+..++|||||+|.+.++|++|+ .|++ ..++|+.|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g-~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDG-IIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTT-EEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcC-CEEcCceE
Confidence 36899999999999999999999999 6 8899999999999999999999999999 7855 69999999
Q ss_pred EEEEcCCCC
Q 048750 262 KLMWGKPQT 270 (344)
Q Consensus 262 ~V~~ak~~~ 270 (344)
+|.|+++..
T Consensus 81 ~v~~~~~~~ 89 (198)
T 2yh0_A 81 KIRRPHDYQ 89 (198)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999988754
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.37 E-value=1.3e-12 Score=120.49 Aligned_cols=80 Identities=21% Similarity=0.229 Sum_probs=73.2
Q ss_pred CCCccEEEeccCCCCC-CHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 191 DESIKTLYVGGVDARI-TEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~-te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
....++|||+|||.++ ++++|+++|+.||.|.+++|..+ +|+|||+|.+.++|.+|++.|++ ..++|+.|+|.
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADG-LSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCC-CccCCeEEEEE
Confidence 3557899999999996 99999999999999999999886 78999999999999999999966 58999999999
Q ss_pred EcCCCCC
Q 048750 265 WGKPQTQ 271 (344)
Q Consensus 265 ~ak~~~~ 271 (344)
|++++..
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9988654
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.37 E-value=9.8e-13 Score=111.86 Aligned_cols=79 Identities=27% Similarity=0.383 Sum_probs=68.3
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC--------CCEEEEEeCCHHHHHHHHHHhCCCeEEC--CeEEE
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ--------KAFAFVTYTTREGAEKAAEELSNKLVIK--GLRLK 262 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~--------kg~aFV~F~~~~~A~~A~~~l~~~~~i~--g~~l~ 262 (344)
+.++|||+|||.++++++|+++|++||.|.+++++.+ +|||||+|.+.++|++|++.|++...+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 3689999999999999999999999999999999853 6799999999999999999997764444 47888
Q ss_pred EEEcCCCCC
Q 048750 263 LMWGKPQTQ 271 (344)
Q Consensus 263 V~~ak~~~~ 271 (344)
|.++++...
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888876543
No 191
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.36 E-value=1.4e-12 Score=109.96 Aligned_cols=73 Identities=22% Similarity=0.407 Sum_probs=66.7
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeEECCe--EEEEE
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTTREGAEKAAEELSNKLVIKGL--RLKLM 264 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~--~l~V~ 264 (344)
..++|||+|||..+++++|+++|++||.|.++++..+ +|+|||+|.+.++|++|++.|++. .++|+ +|+|+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~~~i~v~ 165 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVK 165 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-CCTTCSSCCEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC-ccCCCccceEEE
Confidence 4679999999999999999999999999999999875 589999999999999999999775 88886 49999
Q ss_pred Ec
Q 048750 265 WG 266 (344)
Q Consensus 265 ~a 266 (344)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 192
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1e-12 Score=106.82 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=63.2
Q ss_pred cEEEeccC----CCCCCHHHHHHHhhcCCCeeEEEEeCC------CCEEEEEeCC----HHH----HHHHHH--HhCCCe
Q 048750 195 KTLYVGGV----DARITEQDLRDNFYAHGEIESIKMHPQ------KAFAFVTYTT----REG----AEKAAE--ELSNKL 254 (344)
Q Consensus 195 ~tLfVgnL----~~~~te~~L~~~F~~fG~I~~v~i~~~------kg~aFV~F~~----~~~----A~~A~~--~l~~~~ 254 (344)
+.|||+|| ++.++|.+|+++|++||+|.++.++.+ +|||||+|.+ .++ |.+|+. .+ ++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~l-ng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHES-SGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTT-TCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhh-cCC
Confidence 68999999 999999999999999999999999987 7999999996 323 788877 56 457
Q ss_pred EECCeEEEEEEcCC
Q 048750 255 VIKGLRLKLMWGKP 268 (344)
Q Consensus 255 ~i~g~~l~V~~ak~ 268 (344)
.|+|+.|+|.+-+.
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998664
No 193
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=7.5e-12 Score=98.22 Aligned_cols=67 Identities=21% Similarity=0.235 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCCCCCC
Q 048750 204 ARITEQDLRDNFYAHGEIESIKMHP-QKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRP 273 (344)
Q Consensus 204 ~~~te~~L~~~F~~fG~I~~v~i~~-~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~~~~~ 273 (344)
..+++++|+++|++||+|.+|.|+. .+|||||+|.+.++|+.|++.++ .+.|+.|+|.|++++....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~---~~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV---GLVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC---BCSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC---CCCCCeEEEEEccCCCCCC
Confidence 4689999999999999999999984 48999999999999999998753 3579999999999876443
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.34 E-value=2.9e-12 Score=118.63 Aligned_cols=76 Identities=17% Similarity=0.382 Sum_probs=70.1
Q ss_pred CCccEEEeccCCCC-CCHHHHHHHhhcCCCeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEE
Q 048750 192 ESIKTLYVGGVDAR-ITEQDLRDNFYAHGEIESIKMHPQ-------KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKL 263 (344)
Q Consensus 192 ~~~~tLfVgnL~~~-~te~~L~~~F~~fG~I~~v~i~~~-------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V 263 (344)
...++|||+|||.+ +++++|+++|++||.|.+|+|..+ +|||||+|.+.++|++|+ .|++ ..++|+.|.|
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g-~~~~g~~i~V 285 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNR-SLLGNREISV 285 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTT-EEETTEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcC-CEECCcEEEE
Confidence 45789999999999 999999999999999999999764 579999999999999999 9966 6999999999
Q ss_pred EEcCCC
Q 048750 264 MWGKPQ 269 (344)
Q Consensus 264 ~~ak~~ 269 (344)
.|++++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999985
No 195
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.34 E-value=5.1e-12 Score=116.56 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=69.8
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCCC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQ 269 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~~ 269 (344)
..++|||+|||.++++++|+++|+.|| |.++.+...+|||||+|.+.++|++|++.|++ ..++|+.|.|.|+.+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~-~~~~g~~i~v~~~~~~ 95 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQ-SRLRERELSVQLQPTD 95 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEECCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCC-CeeCCeEEEEEecCCC
Confidence 368999999999999999999999999 99999988899999999999999999999966 5899999999997654
No 196
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.33 E-value=3.5e-12 Score=121.27 Aligned_cols=77 Identities=23% Similarity=0.381 Sum_probs=67.2
Q ss_pred CCCccEEEecc--CCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEE--CCe--EEEEE
Q 048750 191 DESIKTLYVGG--VDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVI--KGL--RLKLM 264 (344)
Q Consensus 191 d~~~~tLfVgn--L~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i--~g~--~l~V~ 264 (344)
+...++||||| |+..++|++|+++|++||+|.+|.+..+||||||+|.+.++|++|++.|+|..++ .|+ .|.|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 34578999998 5789999999999999999999999989999999999999999999999887554 234 67888
Q ss_pred EcC
Q 048750 265 WGK 267 (344)
Q Consensus 265 ~ak 267 (344)
+..
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 874
No 197
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.32 E-value=5.7e-12 Score=107.55 Aligned_cols=80 Identities=21% Similarity=0.334 Sum_probs=67.8
Q ss_pred CCCCccEEEeccCCCCCCHHHHHHHhhcCCCeeE-----EEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 190 EDESIKTLYVGGVDARITEQDLRDNFYAHGEIES-----IKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 190 ~d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~-----v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
+....++|||+|||.++++++|+++|++||.|.. ......+|||||+|.+.++|++|++ |++ ..+.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g-~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTG-LKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGG-EEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCC-CEeCCeEEEEe
Confidence 3456899999999999999999999999985443 4444458999999999999999995 855 69999999999
Q ss_pred EcCCCCC
Q 048750 265 WGKPQTQ 271 (344)
Q Consensus 265 ~ak~~~~ 271 (344)
|+++...
T Consensus 87 ~~~~~~~ 93 (175)
T 1fje_B 87 KPKGRDS 93 (175)
T ss_dssp CCCCSSC
T ss_pred cCCCccc
Confidence 9987543
No 198
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.28 E-value=5.6e-12 Score=111.63 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=64.9
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCe--eEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeEECCe----EEEE
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEI--ESIKMHPQ----KAFAFVTYTTREGAEKAAEELSNKLVIKGL----RLKL 263 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I--~~v~i~~~----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~----~l~V 263 (344)
.++|||+|||.++++++|+++|++||.| .++++..+ +|+|||+|.+.++|.+|+..|++ ..++|+ ++.|
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng-~~~~g~~~~~p~~v 201 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNH-YQMKNPNGPYPYTL 201 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTT-CEECCSSSSSCEEC
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCC-CCccCCCCCcceEE
Confidence 6799999999999999999999999999 89999876 48999999999999999999966 588875 6777
Q ss_pred EEc
Q 048750 264 MWG 266 (344)
Q Consensus 264 ~~a 266 (344)
+|+
T Consensus 202 k~~ 204 (205)
T 3tyt_A 202 KLC 204 (205)
T ss_dssp EEE
T ss_pred Eec
Confidence 775
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.28 E-value=5.9e-12 Score=115.23 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=70.6
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEEC---CeEEEEEE
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIK---GLRLKLMW 265 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~---g~~l~V~~ 265 (344)
.++|||+||+..+++++|+++|+.||.|.+|.|+.+ +|||||+|.+.++|.+|+..|+++..+. +++|.|.|
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~ 175 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEP 175 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEee
Confidence 679999999999999999999999999999999876 7899999999999999999997666665 89999999
Q ss_pred cCCCC
Q 048750 266 GKPQT 270 (344)
Q Consensus 266 ak~~~ 270 (344)
+.+..
T Consensus 176 ~~~~~ 180 (261)
T 3sde_A 176 MEQFD 180 (261)
T ss_dssp CCCEE
T ss_pred ccccC
Confidence 98754
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.27 E-value=1.4e-11 Score=114.08 Aligned_cols=79 Identities=24% Similarity=0.361 Sum_probs=69.9
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCC-CeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHG-EIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG-~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~a 266 (344)
..++|||+|||.++++++|+++|+.|| .|.+|.++.+ +|||||+|.+.++|++|++.|++ ..++|+.|.|.|+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNG-LKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTT-CEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEeCCcEEEEEEC
Confidence 478999999999999999999999999 9999999873 79999999999999999999966 5899999999999
Q ss_pred CCCCCC
Q 048750 267 KPQTQR 272 (344)
Q Consensus 267 k~~~~~ 272 (344)
.+....
T Consensus 195 ~~~~~~ 200 (292)
T 2ghp_A 195 NPLEKS 200 (292)
T ss_dssp CCC---
T ss_pred CCCccc
Confidence 876543
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.26 E-value=2.1e-11 Score=96.43 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=64.5
Q ss_pred CccEEEeccC--CCCCC--------HHHHHHHhhcCCCeeEEEEeCC--------CCEEEEEeCCHHHHHHHHHHhCCCe
Q 048750 193 SIKTLYVGGV--DARIT--------EQDLRDNFYAHGEIESIKMHPQ--------KAFAFVTYTTREGAEKAAEELSNKL 254 (344)
Q Consensus 193 ~~~tLfVgnL--~~~~t--------e~~L~~~F~~fG~I~~v~i~~~--------kg~aFV~F~~~~~A~~A~~~l~~~~ 254 (344)
+.+.|.+.|+ +.++. +++|++.|++||.|.+|.|..+ +|+|||+|.+.++|++|++.|+|.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~- 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR- 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC-
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC-
Confidence 3678899998 33332 3689999999999999999864 699999999999999999999775
Q ss_pred EECCeEEEEEEcCC
Q 048750 255 VIKGLRLKLMWGKP 268 (344)
Q Consensus 255 ~i~g~~l~V~~ak~ 268 (344)
.++||.|+|.|+..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999764
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.26 E-value=3.2e-12 Score=101.03 Aligned_cols=67 Identities=19% Similarity=0.427 Sum_probs=58.5
Q ss_pred eccCCCCCCHHHHHHHh------------hcCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEE
Q 048750 199 VGGVDARITEQDLRDNF------------YAHGEIESIKMHPQ-----KAFAFVTYTTREGAEKAAEELSNKLVIKGLRL 261 (344)
Q Consensus 199 VgnL~~~~te~~L~~~F------------~~fG~I~~v~i~~~-----kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l 261 (344)
+.||+..+++++|+++| ++||.|.+|.|..+ +|||||+|.+.++|++|++.|+|. .++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~-~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR-WFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTC-EETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCC-EECCEEE
Confidence 56777777777777666 99999999999875 799999999999999999999775 9999999
Q ss_pred EEEEc
Q 048750 262 KLMWG 266 (344)
Q Consensus 262 ~V~~a 266 (344)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.19 E-value=6.4e-11 Score=95.70 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=64.4
Q ss_pred ccEEEeccCC--CCC---CHHHHHHHhhcCCCeeEEEEeCC----------CCEEEEEeCCHHHHHHHHHHhCCCeEECC
Q 048750 194 IKTLYVGGVD--ARI---TEQDLRDNFYAHGEIESIKMHPQ----------KAFAFVTYTTREGAEKAAEELSNKLVIKG 258 (344)
Q Consensus 194 ~~tLfVgnL~--~~~---te~~L~~~F~~fG~I~~v~i~~~----------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g 258 (344)
.++|+|.|+- .++ .+++|++.|++||.|.+|.|..+ +|++||+|.+.++|++|++.|+|. .++|
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr-~f~G 98 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-WFAG 98 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC-EETT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC-EECC
Confidence 6899999983 222 46899999999999999999864 379999999999999999999775 9999
Q ss_pred eEEEEEEcCC
Q 048750 259 LRLKLMWGKP 268 (344)
Q Consensus 259 ~~l~V~~ak~ 268 (344)
|.|+|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999753
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.15 E-value=8.4e-11 Score=94.40 Aligned_cols=74 Identities=12% Similarity=0.164 Sum_probs=62.9
Q ss_pred ccEEEeccCC--CCC--------CHHHHHHHhhcCCCeeEEEEeCC--CCEEEEEeCCHHHHHHHHHHhCCCeEECCeEE
Q 048750 194 IKTLYVGGVD--ARI--------TEQDLRDNFYAHGEIESIKMHPQ--KAFAFVTYTTREGAEKAAEELSNKLVIKGLRL 261 (344)
Q Consensus 194 ~~tLfVgnL~--~~~--------te~~L~~~F~~fG~I~~v~i~~~--kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l 261 (344)
.+.|.+.|+- .+. .+++|++.|++||.|.+|.|..+ +|++||+|.+.++|++|++.|+|. .++||.|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~-~f~GR~i 85 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGR-WFAGKMI 85 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTC-EETTEEC
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCC-EECCEEE
Confidence 5678888872 221 24689999999999999999876 799999999999999999999775 9999999
Q ss_pred EEEEcCC
Q 048750 262 KLMWGKP 268 (344)
Q Consensus 262 ~V~~ak~ 268 (344)
+|.|+..
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 9999864
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=5.6e-10 Score=85.05 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=60.8
Q ss_pred ccEEEeccCC----CCCCH----HHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEE
Q 048750 194 IKTLYVGGVD----ARITE----QDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 265 (344)
Q Consensus 194 ~~tLfVgnL~----~~~te----~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ 265 (344)
..||+|.-.+ ..+.. .+|.+.|++||+|..++++.++ +||+|.+.++|.+|++ |++ ..++||.|+|++
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG-~~v~Gr~LkV~l 82 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNG-KELLNRTITIAL 82 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTT-CEETTEEEEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCC-eEeCCeEEEEEe
Confidence 4688887665 22323 5789999999999999999876 8999999999999998 966 599999999999
Q ss_pred cCCC
Q 048750 266 GKPQ 269 (344)
Q Consensus 266 ak~~ 269 (344)
+++.
T Consensus 83 kt~d 86 (91)
T 2dnr_A 83 KSPS 86 (91)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9874
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=8.3e-10 Score=89.20 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=67.2
Q ss_pred CccEEEeccCCCC-CCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCC-HHHHHHHHHHhC-CCeEECCeEEEEEEc
Q 048750 193 SIKTLYVGGVDAR-ITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTT-REGAEKAAEELS-NKLVIKGLRLKLMWG 266 (344)
Q Consensus 193 ~~~tLfVgnL~~~-~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~-~~~A~~A~~~l~-~~~~i~g~~l~V~~a 266 (344)
....|||+||+.+ +++++|+++|++||+|..|.+..+...|||+|.+ ..+|+.|+..++ +++.|+|..++++..
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 4789999999999 9999999999999999999999999999999999 899999999985 467889988777654
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=9.6e-09 Score=78.64 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=62.7
Q ss_pred CCCCCCCCCccEEEeccCCCC------CCH---HHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeE
Q 048750 185 SLEPPEDESIKTLYVGGVDAR------ITE---QDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLV 255 (344)
Q Consensus 185 ~~~~p~d~~~~tLfVgnL~~~------~te---~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~ 255 (344)
..+|| .-||+|.-++.. ..+ .+|.+.|+.||+|..++++.++ +||+|.+.++|.+|++ |++ ..
T Consensus 10 ~~GPp----D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG-~~ 81 (95)
T 1ufw_A 10 FQGPL----DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDG-MK 81 (95)
T ss_dssp CCCCT----TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGG-SE
T ss_pred ecCCC----CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCC-ee
Confidence 45555 568999887633 232 4689999999999999999887 9999999999999998 966 59
Q ss_pred ECCeEEEEEEcCC
Q 048750 256 IKGLRLKLMWGKP 268 (344)
Q Consensus 256 i~g~~l~V~~ak~ 268 (344)
++||.|+|++..+
T Consensus 82 v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 82 VKGRAVKISGPSS 94 (95)
T ss_dssp ETTEEEEEECCCC
T ss_pred eCCeEEEEeccCC
Confidence 9999999998654
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.52 E-value=1.1e-07 Score=84.59 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=55.0
Q ss_pred CCHHHHHHHhhcCCCeeEEEEeC----------CCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 206 ITEQDLRDNFYAHGEIESIKMHP----------QKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 206 ~te~~L~~~F~~fG~I~~v~i~~----------~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
-.+++|++.|++||.|.++.|.. .+|++||+|.+.++|++|++.|+|+ .++||.|.|.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr-~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-WFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC-BSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc-eECCeEEEEEEcC
Confidence 45688999999999999999973 3689999999999999999999776 9999999999975
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.3e-06 Score=68.29 Aligned_cols=71 Identities=10% Similarity=0.044 Sum_probs=66.7
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcC-----CCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEE
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAH-----GEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLM 264 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~f-----G~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~ 264 (344)
..++|-+-|||+.+++..|+.+.+.+ |.|+.|.+..+.+-|+|+|.+...|-+|.-+|+| ..|+|+.|+|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G-~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNG-SQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSS-EEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCC-eeecCeEEEec
Confidence 46788899999999999999999999 9999999999999999999999999999999965 69999999986
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.69 E-value=0.00013 Score=56.55 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=65.3
Q ss_pred ccEEEeccCCCCC-C----HHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcCC
Q 048750 194 IKTLYVGGVDARI-T----EQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKP 268 (344)
Q Consensus 194 ~~tLfVgnL~~~~-t----e~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak~ 268 (344)
.++|+|.||+.++ . .+.++++|..|+++......++-.-..|.|.+.++|.+|-..|++ ..++|+.|+|-++.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~-~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHK-TEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTT-SEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhcc-ceecCceeEEEecCC
Confidence 4689999998766 2 256899999999999999998867789999999999999999966 599999999999985
Q ss_pred C
Q 048750 269 Q 269 (344)
Q Consensus 269 ~ 269 (344)
.
T Consensus 84 ~ 84 (104)
T 1wey_A 84 L 84 (104)
T ss_dssp S
T ss_pred C
Confidence 3
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=0.0013 Score=50.91 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=62.9
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcC-----CCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAH-----GEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~f-----G~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
..++|.|.|||++++++.|.-+|++- |+|.++.... +-|+|+|.+.+.|++.++. ..+.+++..|.|.-.-
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k--~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ--ADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC--SCCBSSSSBCEEEECC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC--CcceecCeEEEEEcCC
Confidence 36799999999999999999999872 7999999886 8899999999999999863 2578999999998655
Q ss_pred CCC
Q 048750 268 PQT 270 (344)
Q Consensus 268 ~~~ 270 (344)
+..
T Consensus 83 ~~~ 85 (104)
T 2dhx_A 83 PRA 85 (104)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.34 E-value=0.00096 Score=53.10 Aligned_cols=74 Identities=14% Similarity=0.065 Sum_probs=60.6
Q ss_pred CCCccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECC-eEEEEEEcC
Q 048750 191 DESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKG-LRLKLMWGK 267 (344)
Q Consensus 191 d~~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g-~~l~V~~ak 267 (344)
....+.|-|.+.+... -..|.++|++||+|.+.......++-.|+|.++.+|++|+.. |+.+++| ..|-|.+..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k--NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK--DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT--TTCEETTTEECEEEECC
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh--CCeEecCCEEEEEEECC
Confidence 3457788899998885 467888999999999998866789999999999999999974 5567874 777888753
No 213
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.89 E-value=0.00037 Score=51.32 Aligned_cols=28 Identities=32% Similarity=0.897 Sum_probs=23.8
Q ss_pred cCCccccccccCCcCCCCCCCCCCCCCC
Q 048750 124 RNRAHVCSFYVRGECTRGAECPYRHEMP 151 (344)
Q Consensus 124 ~~~~~~C~ff~~G~C~rG~~Cpy~H~~p 151 (344)
..+..+|.||++|.|.+|+.|+|.|...
T Consensus 7 ~~k~~~C~~fl~G~C~~G~~C~fsH~~~ 34 (77)
T 2d9n_A 7 GEKTVVCKHWLRGLCKKGDQCEFLHEYD 34 (77)
T ss_dssp CCTTSBCHHHHTTCCSCTTSSSSBCSCC
T ss_pred CCcceeCHhHccCcCCCCCCCCCccccc
Confidence 4456789999999999999999999864
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.69 E-value=0.0066 Score=46.03 Aligned_cols=64 Identities=9% Similarity=0.244 Sum_probs=55.1
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC--------CCEEEEEeCCHHHHHHHHHHhCCCeEECC
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ--------KAFAFVTYTTREGAEKAAEELSNKLVIKG 258 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~--------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g 258 (344)
++|.|.+||+.+||+++.+.++...++.....+.. -.-|||.|.+.+++....+.++|...++.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 57899999999999999999999988877776654 35799999999999999999988766655
No 215
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=96.69 E-value=0.0004 Score=50.50 Aligned_cols=27 Identities=33% Similarity=0.942 Sum_probs=23.4
Q ss_pred CCccccccccCCcCCCCCCCCCCCCCC
Q 048750 125 NRAHVCSFYVRGECTRGAECPYRHEMP 151 (344)
Q Consensus 125 ~~~~~C~ff~~G~C~rG~~Cpy~H~~p 151 (344)
.+..+|.||.+|.|.+|+.|+|.|...
T Consensus 14 ~k~~vCk~fl~G~C~~G~~C~fsH~~~ 40 (72)
T 2rhk_C 14 EKTVVCKHWLRGLCKKGDQCEFLHEYD 40 (72)
T ss_dssp CCCSBCHHHHTTCCCCGGGSSSBCSCC
T ss_pred CcCeeCHHHhcCCCCCCCCCCCccccc
Confidence 345789999999999999999999863
No 216
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.58 E-value=0.0097 Score=45.45 Aligned_cols=54 Identities=26% Similarity=0.246 Sum_probs=44.9
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHh
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEEL 250 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l 250 (344)
..-++| ++|.++...||.++|+.||.| .|+.+. -..|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~Wid-DTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID-DTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEE-TTEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEc-CCeEEEEecCHHHHHHHHHhc
Confidence 455666 999999999999999999943 455444 468999999999999999876
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.45 E-value=0.0022 Score=51.75 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=55.3
Q ss_pred CccEEEeccCCCCCCHHHHHHHhhcCCCeeE-EEEe-------------------CCCCEEEEEeCCHHHHHHHHHHhCC
Q 048750 193 SIKTLYVGGVDARITEQDLRDNFYAHGEIES-IKMH-------------------PQKAFAFVTYTTREGAEKAAEELSN 252 (344)
Q Consensus 193 ~~~tLfVgnL~~~~te~~L~~~F~~fG~I~~-v~i~-------------------~~kg~aFV~F~~~~~A~~A~~~l~~ 252 (344)
..+.|.|-+.|++.+ ..+-++|++||.|.+ +.+. ...++..|+|+++.+|.+|+.. |
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~--N 82 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE--N 82 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT--T
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh--C
Confidence 356777888877655 567889999999987 2111 1367889999999999999974 5
Q ss_pred CeEECCeEEEEEEcCC
Q 048750 253 KLVIKGLRLKLMWGKP 268 (344)
Q Consensus 253 ~~~i~g~~l~V~~ak~ 268 (344)
+.+++|.-|-|.+.++
T Consensus 83 G~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYTK 98 (132)
T ss_dssp TCEETTEECEEEECCH
T ss_pred CeEeCcEEEEEEECCH
Confidence 5689999889988764
No 218
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=96.45 E-value=0.00069 Score=48.92 Aligned_cols=27 Identities=41% Similarity=0.994 Sum_probs=23.3
Q ss_pred CCccccccccCCcCCCCC-CCCCCCCCC
Q 048750 125 NRAHVCSFYVRGECTRGA-ECPYRHEMP 151 (344)
Q Consensus 125 ~~~~~C~ff~~G~C~rG~-~Cpy~H~~p 151 (344)
++-.+|.+|.+|.|.+|+ .|+|.|...
T Consensus 4 ~k~~vC~~f~~G~C~rg~~~C~f~H~~~ 31 (70)
T 3d2q_A 4 DRLEVCREYQRGNCNRGENDCRFAHPAD 31 (70)
T ss_dssp CEEEBCHHHHTTCCSSCTTTCSSBCCCT
T ss_pred ccchhCHHHhcCCCCCCCCCCCCccCcc
Confidence 455799999999999999 599999764
No 219
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=96.26 E-value=0.0021 Score=49.55 Aligned_cols=24 Identities=42% Similarity=1.178 Sum_probs=17.9
Q ss_pred CccccccccCCcCCCCCCCCCCCC
Q 048750 126 RAHVCSFYVRGECTRGAECPYRHE 149 (344)
Q Consensus 126 ~~~~C~ff~~G~C~rG~~Cpy~H~ 149 (344)
+..+|.||..|.|.+|+.|+|.|.
T Consensus 12 k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 12 KRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CCccCcccccCcCCCCCCCCCCCC
Confidence 445777777777777777777776
No 220
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.04 E-value=0.0086 Score=45.88 Aligned_cols=53 Identities=25% Similarity=0.206 Sum_probs=44.6
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHh
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEEL 250 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l 250 (344)
.-++| ++|.++...||.++|+.|| -..|+.+. -..|||.|.+++.|..|+..+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~Wid-DTsAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWID-DTSAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEE-TTEEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEc-CCeEEEEecCHHHHHHHHHhc
Confidence 34555 9999999999999999999 44565554 468999999999999999977
No 221
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.94 E-value=0.004 Score=60.98 Aligned_cols=54 Identities=15% Similarity=0.253 Sum_probs=42.8
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCC-EEEEEeCCHHHHHHHHH
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKA-FAFVTYTTREGAEKAAE 248 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg-~aFV~F~~~~~A~~A~~ 248 (344)
.++|||. .+..+++.+|.++|++||.|.++.+-.++| ||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 6799997 799999999999999999999999988765 99999999999887754
No 222
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=95.92 E-value=0.0034 Score=46.82 Aligned_cols=27 Identities=33% Similarity=0.764 Sum_probs=23.5
Q ss_pred CccccccccCCcCCCCC-CCCCCCCCCC
Q 048750 126 RAHVCSFYVRGECTRGA-ECPYRHEMPV 152 (344)
Q Consensus 126 ~~~~C~ff~~G~C~rG~-~Cpy~H~~p~ 152 (344)
+-.+|.+|.+|.|.||+ +|+|.|....
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~~ 35 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSKS 35 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCTT
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCcc
Confidence 34699999999999997 9999998753
No 223
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.59 E-value=0.0013 Score=50.74 Aligned_cols=28 Identities=32% Similarity=0.902 Sum_probs=24.2
Q ss_pred cCCccccccccCCcCCCCC-CCCCCCCCC
Q 048750 124 RNRAHVCSFYVRGECTRGA-ECPYRHEMP 151 (344)
Q Consensus 124 ~~~~~~C~ff~~G~C~rG~-~Cpy~H~~p 151 (344)
.++-.+|.+|.+|.|.||+ .|+|.|...
T Consensus 17 ~~k~~VCr~FlrG~C~rgd~~C~FsH~~~ 45 (98)
T 2e5s_A 17 TDKLEVCREFQRGNCARGETDCRFAHPAD 45 (98)
T ss_dssp SSEEEBCSHHHHTCCSSHHHHCSSBCCSS
T ss_pred hhhhhhhHHHhcCcCCCCCCCCCCcCCch
Confidence 3456799999999999999 799999864
No 224
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.51 E-value=0.0029 Score=45.55 Aligned_cols=26 Identities=38% Similarity=0.897 Sum_probs=22.8
Q ss_pred CCccccccccCCcCCCCCCCCCCCCCC
Q 048750 125 NRAHVCSFYVRGECTRGAECPYRHEMP 151 (344)
Q Consensus 125 ~~~~~C~ff~~G~C~rG~~Cpy~H~~p 151 (344)
.+..+|.+|.+|.|.+| .|+|.|..+
T Consensus 40 ~~~~vC~~flkG~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 40 NTVTVCMDYIKGRCSRE-KCKYFHPPA 65 (70)
T ss_dssp TEEEBCHHHHTTCCCCT-TCCSBCCCH
T ss_pred CcceeccccCcCCCCCC-CcCeeCCHH
Confidence 35679999999999999 999999754
No 225
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.46 E-value=0.031 Score=42.70 Aligned_cols=73 Identities=4% Similarity=0.143 Sum_probs=54.1
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCC--------CCEEEEEeCCHHHHHHHHHHhCCCeEECCe----EE
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQ--------KAFAFVTYTTREGAEKAAEELSNKLVIKGL----RL 261 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~--------kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~----~l 261 (344)
.-+|.|..||+.+||+++.+.++.+-++.....+.. -.-|||.|.+.++.....+.++|...++.+ +-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 457899999999999999888876655443333322 357899999999999999999876666543 34
Q ss_pred EEEEc
Q 048750 262 KLMWG 266 (344)
Q Consensus 262 ~V~~a 266 (344)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 45554
No 226
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=95.20 E-value=0.0044 Score=46.77 Aligned_cols=27 Identities=33% Similarity=0.792 Sum_probs=23.9
Q ss_pred CccccccccCCcCCCCC-CCCCCCCCCC
Q 048750 126 RAHVCSFYVRGECTRGA-ECPYRHEMPV 152 (344)
Q Consensus 126 ~~~~C~ff~~G~C~rG~-~Cpy~H~~p~ 152 (344)
+-.+|.+|.+|.|.||+ +|+|.|....
T Consensus 16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 16 TLEVCRQFQRGTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp EECBCHHHHHTCCCCCTTTSSSBCCCSS
T ss_pred hhhhchHHhcCCCCCCCCCCCCcCCCcc
Confidence 45799999999999998 9999998754
No 227
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=95.04 E-value=0.0074 Score=43.68 Aligned_cols=26 Identities=42% Similarity=1.033 Sum_probs=23.0
Q ss_pred CccccccccC-CcCCCCCCCCCCCCCCC
Q 048750 126 RAHVCSFYVR-GECTRGAECPYRHEMPV 152 (344)
Q Consensus 126 ~~~~C~ff~~-G~C~rG~~Cpy~H~~p~ 152 (344)
+..+|.||.+ |.|.+ +.|+|.|..|.
T Consensus 43 ~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 43 KMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 3458999999 99999 99999999874
No 228
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.90 E-value=0.0086 Score=43.89 Aligned_cols=24 Identities=46% Similarity=1.081 Sum_probs=21.8
Q ss_pred cccccccC-CcCCCCCCCCCCCCCCC
Q 048750 128 HVCSFYVR-GECTRGAECPYRHEMPV 152 (344)
Q Consensus 128 ~~C~ff~~-G~C~rG~~Cpy~H~~p~ 152 (344)
.+|.||.+ |.|. |+.|+|+|..|.
T Consensus 39 ~~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 39 PECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp CBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred CCCcccCCCCccC-CCCeeccCCCcc
Confidence 48999998 9999 899999999874
No 229
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.40 E-value=0.0077 Score=46.32 Aligned_cols=26 Identities=38% Similarity=0.870 Sum_probs=23.0
Q ss_pred CCccccccccCCcCCCCCCCCCCCCCC
Q 048750 125 NRAHVCSFYVRGECTRGAECPYRHEMP 151 (344)
Q Consensus 125 ~~~~~C~ff~~G~C~rG~~Cpy~H~~p 151 (344)
.+..+|.+|.+|.|.|| .|+|.|..+
T Consensus 54 ~~~~vC~~flkG~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 54 NTVTVCMDYIKGRCMRE-KCKYFHPPA 79 (98)
T ss_dssp CEEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred CccccchhhccCCCCCC-CcCccCChH
Confidence 35679999999999999 999999765
No 230
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=94.24 E-value=0.012 Score=43.81 Aligned_cols=25 Identities=36% Similarity=0.820 Sum_probs=22.2
Q ss_pred CccccccccCCcCCCCCCCCCCCCCC
Q 048750 126 RAHVCSFYVRGECTRGAECPYRHEMP 151 (344)
Q Consensus 126 ~~~~C~ff~~G~C~rG~~Cpy~H~~p 151 (344)
+-.+|.+|.+|.|.|+ .|+|.|..+
T Consensus 42 ~~~vC~dflkG~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 42 RVIACFDSLKGRCSRE-NCKYLHPPP 66 (83)
T ss_dssp EEECCHHHHTTCCCCS-SCSSCCCCH
T ss_pred ceeehhHhhhccccCC-CcceeCChH
Confidence 4579999999999998 899999854
No 231
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=94.15 E-value=0.026 Score=40.96 Aligned_cols=26 Identities=31% Similarity=0.887 Sum_probs=22.6
Q ss_pred Cccccccc-cCCcCCCCCCCCCCCCCC
Q 048750 126 RAHVCSFY-VRGECTRGAECPYRHEMP 151 (344)
Q Consensus 126 ~~~~C~ff-~~G~C~rG~~Cpy~H~~p 151 (344)
+..+|.+| ..|.|..|+.|.|.|...
T Consensus 11 kt~~C~~f~~~G~C~~G~~C~f~H~~~ 37 (77)
T 1m9o_A 11 KTELCRTYSESGRCRYGAKCQFAHGLG 37 (77)
T ss_dssp CSCCCSGGGGTSCCTTTTTCSSCSSSC
T ss_pred cchhCHHhhhCCCcCCCCCccCCCCCh
Confidence 35789999 589999999999999864
No 232
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=92.94 E-value=0.041 Score=42.19 Aligned_cols=25 Identities=28% Similarity=0.862 Sum_probs=22.1
Q ss_pred ccccccc-cCCcCCCCCCCCCCCCCC
Q 048750 127 AHVCSFY-VRGECTRGAECPYRHEMP 151 (344)
Q Consensus 127 ~~~C~ff-~~G~C~rG~~Cpy~H~~p 151 (344)
..+|.|| ..|.|.+|+.|.|.|...
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 4679999 699999999999999853
No 233
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=92.15 E-value=0.048 Score=35.91 Aligned_cols=26 Identities=27% Similarity=0.820 Sum_probs=23.1
Q ss_pred Cccccccc-cCCcCCCCCCCCCCCCCC
Q 048750 126 RAHVCSFY-VRGECTRGAECPYRHEMP 151 (344)
Q Consensus 126 ~~~~C~ff-~~G~C~rG~~Cpy~H~~p 151 (344)
...+|.-| +-|.|.+|..||+.|.+-
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCC
Confidence 45799999 899999999999999864
No 234
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=91.77 E-value=0.04 Score=41.48 Aligned_cols=26 Identities=31% Similarity=0.697 Sum_probs=22.8
Q ss_pred CCccccccccCCcCCCCCCCCCCCCCC
Q 048750 125 NRAHVCSFYVRGECTRGAECPYRHEMP 151 (344)
Q Consensus 125 ~~~~~C~ff~~G~C~rG~~Cpy~H~~p 151 (344)
.+-.+|.+|.+|.|.|+ .|+|.|..+
T Consensus 49 ~~~~vC~dflkG~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 49 GRVIACFDSLKGRCSRE-NCKYLHPPT 74 (89)
T ss_dssp TBEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred CceeeehhhhhCcCCCC-CcceecCHH
Confidence 35689999999999998 899999864
No 235
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=91.59 E-value=0.034 Score=40.39 Aligned_cols=25 Identities=24% Similarity=0.824 Sum_probs=0.0
Q ss_pred ccccccc-cCCcCCCCCCCCCCCCCC
Q 048750 127 AHVCSFY-VRGECTRGAECPYRHEMP 151 (344)
Q Consensus 127 ~~~C~ff-~~G~C~rG~~Cpy~H~~p 151 (344)
..+|.+| ..|.|.+|+.|.|.|...
T Consensus 50 ~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 50 TELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp --------------------------
T ss_pred CCcccchhhCcCCCCcCcCCCCCCCC
Confidence 3689755 799999999999999764
No 236
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=91.07 E-value=0.077 Score=43.51 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=21.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHhCC
Q 048750 230 KAFAFVTYTTREGAEKAAEELSN 252 (344)
Q Consensus 230 kg~aFV~F~~~~~A~~A~~~l~~ 252 (344)
+|||||+|.+.++|++|++.+++
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhhcc
Confidence 79999999999999999988754
No 237
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.36 E-value=0.071 Score=37.93 Aligned_cols=23 Identities=30% Similarity=0.938 Sum_probs=21.5
Q ss_pred cccccccCCcCCCCCCCCCCCCC
Q 048750 128 HVCSFYVRGECTRGAECPYRHEM 150 (344)
Q Consensus 128 ~~C~ff~~G~C~rG~~Cpy~H~~ 150 (344)
.+|..|..|.|..|+.|.|-|..
T Consensus 21 ~LC~~~~~G~C~~G~~C~FAHG~ 43 (69)
T 2d9m_A 21 SICDRYMNGTCPEGNSCKFAHGN 43 (69)
T ss_dssp SBCHHHHHSCCSSCSSCSSBSSH
T ss_pred ccCcccCcCCCCCCCccCCcCCH
Confidence 79999999999999999999964
No 238
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=89.89 E-value=0.053 Score=40.27 Aligned_cols=37 Identities=24% Similarity=0.414 Sum_probs=27.2
Q ss_pred ccccccccCCCCceeeeecCCCCCCccceeeehhccccc
Q 048750 6 DYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLK 44 (344)
Q Consensus 6 ~~g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~~k 44 (344)
....+|.+|.++||+|+++= .-|.=--++|..|+..+
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrH--HCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRH--HCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCE--ECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcc--cccCCCcEEChHHhCCe
Confidence 34678999999999997643 34455568888887664
No 239
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=89.88 E-value=0.075 Score=39.25 Aligned_cols=46 Identities=28% Similarity=0.606 Sum_probs=32.0
Q ss_pred cccccccCCCCceeeeecCCCCCCccceeeehhccccc----------cccccccccC
Q 048750 7 YDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLK----------NVCQVCLLDL 54 (344)
Q Consensus 7 ~g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~~k----------n~cq~c~~dl 54 (344)
....|.+|.++||+|+++= .-|.=--++|..|+..+ -||..|...|
T Consensus 18 ~~~~C~~C~~~Fs~~~RrH--HCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 73 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKH--HCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLL 73 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCE--ECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHT
T ss_pred cCCcccCcCCcccCccccc--cCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHH
Confidence 4568999999999987654 33444557888887765 3666665443
No 240
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=89.26 E-value=0.086 Score=42.96 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=33.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHh-CCCeEECCeEEEEEEcCC
Q 048750 230 KAFAFVTYTTREGAEKAAEEL-SNKLVIKGLRLKLMWGKP 268 (344)
Q Consensus 230 kg~aFV~F~~~~~A~~A~~~l-~~~~~i~g~~l~V~~ak~ 268 (344)
+|+++|+|.+.++|++|++.+ ++ ..++| .++|.++..
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng-~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYAND-NGVDG-EWTYDDATK 50 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHH-HTCCC-EEEEETTTT
T ss_pred cccceeeecCHHHHHHHHHHHhcC-CCCCC-ceecccccC
Confidence 799999999999999999999 55 58999 999998875
No 241
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=89.09 E-value=0.1 Score=41.49 Aligned_cols=58 Identities=21% Similarity=0.406 Sum_probs=39.3
Q ss_pred cccccccCCCCceeeeecCCCCCCccceeeehhccccc----cccccccccCCCCCcHHHHHhhhcc
Q 048750 7 YDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLK----NVCQVCLLDLEYGLPVQVRDTALSI 69 (344)
Q Consensus 7 ~g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~~k----n~cq~c~~dl~~~~p~~~rd~~l~~ 69 (344)
....|.+|..+||+|+++- .-|.=--++|.+|+..+ .||..|..-+.- |. -|+.++++
T Consensus 18 ~~~~C~~C~~~Fs~~~RkH--HCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~~~--~~-~~~~l~~l 79 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQ--TCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRAT--AF-QREELMKM 79 (120)
T ss_dssp --CCCTTTCCCCSSGGGCE--ECTTTCCEECGGGEEC----CCEEHHHHHHHHT--TT-CHHHHHTS
T ss_pred ccCcccCcCCccccccccc--cCCCCCCeeCHHHhCCCCCCceECHHHHHHHhc--cc-cHHHHhcc
Confidence 3468999999999987664 44555668999998765 699999654432 22 35666554
No 242
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=88.01 E-value=0.076 Score=38.29 Aligned_cols=33 Identities=24% Similarity=0.554 Sum_probs=23.1
Q ss_pred ccccccCCCCceeeeecCCCCCCccceeeehhccc
Q 048750 8 DKECKICTRPFTVFRWRPGRDARFKKTEICQTCSK 42 (344)
Q Consensus 8 g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~ 42 (344)
+.+|.+|.++||+|+.+= .-|.=--++|..|+.
T Consensus 11 ~~~C~~C~~~F~~~~RrH--HCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKH--HCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCE--ECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccc--cCCCCCEEEcccccC
Confidence 368999999999986543 334444567777764
No 243
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=86.68 E-value=0.21 Score=37.49 Aligned_cols=37 Identities=24% Similarity=0.439 Sum_probs=26.2
Q ss_pred ccccccccCCCCceeeeecCCCCCCccceeeehhccccc
Q 048750 6 DYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLK 44 (344)
Q Consensus 6 ~~g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~~k 44 (344)
....+|.+|.++||+|+.+- .-|.=--++|..|+..+
T Consensus 18 ~~~~~C~~C~~~F~~~~Rrh--hCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRH--HCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCE--ECTTTCCEECGGGSCEE
T ss_pred ccCCcCcCCCCcccchhhCc--cccCCCCEECCcccCCe
Confidence 45678999999999886542 34455567777777653
No 244
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=86.39 E-value=0.2 Score=40.11 Aligned_cols=37 Identities=24% Similarity=0.457 Sum_probs=25.3
Q ss_pred ccccccccCCCCceeeeecCCCCCCccceeeehhccccc
Q 048750 6 DYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLK 44 (344)
Q Consensus 6 ~~g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~~k 44 (344)
.....|.+|.++||+|+.+= .-|.=--++|..|+..+
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrH--HCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRH--HCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCE--ECTTTCCEECGGGSCEE
T ss_pred CCCCCCcCcCCccccccccc--cCCCCCeEEChHHhCCc
Confidence 34568999999999986543 33444457777777654
No 245
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=85.47 E-value=0.15 Score=38.21 Aligned_cols=35 Identities=20% Similarity=0.495 Sum_probs=23.8
Q ss_pred cccccccCCCCceeeeecCCCCCCccceeeehhcccc
Q 048750 7 YDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKL 43 (344)
Q Consensus 7 ~g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~~ 43 (344)
...+|.+|..+||+|+.+= .-|.=--++|..|+..
T Consensus 8 ~~~~C~~C~~~F~~~~RrH--HCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEY--GCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEE--ECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccc--cCCCCCCEEChhHcCC
Confidence 4568999999999986543 2333444677777654
No 246
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.18 E-value=2.9 Score=41.23 Aligned_cols=54 Identities=24% Similarity=0.214 Sum_probs=45.0
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHh
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEEL 250 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l 250 (344)
...++|+ ++..+...+|.+.|+.||. .+|+.+ +...|||.|.+.+.|..++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~wi-ddt~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWI-DDTSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEEC-SSSEEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEE-cCCeEEEEECCHHHHHHHHHHH
Confidence 4566776 8889999999999999995 455544 4678999999999999999988
No 247
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.21 E-value=0.24 Score=36.65 Aligned_cols=36 Identities=19% Similarity=0.494 Sum_probs=24.8
Q ss_pred ccccccccCCCCceeeeecCCCCCCccceeeehhcccc
Q 048750 6 DYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKL 43 (344)
Q Consensus 6 ~~g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~~ 43 (344)
....+|-+|.++||+|+.+= .-|.=--++|..|+..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrH--HCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRR--SCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCE--ECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhh--hhcCCCcEEChhhcCC
Confidence 45578999999999985442 3344445777777654
No 248
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=71.86 E-value=0.99 Score=39.69 Aligned_cols=33 Identities=27% Similarity=0.567 Sum_probs=22.3
Q ss_pred ccccccCCCCceeeeecCCCCCCccceeeehhccc
Q 048750 8 DKECKICTRPFTVFRWRPGRDARFKKTEICQTCSK 42 (344)
Q Consensus 8 g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~ 42 (344)
+.+|-+|..+||+|+.+- +-|.=--++|..|+.
T Consensus 164 ~~~C~~C~~~F~~~~Rrh--HCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKH--HCRACGQIFCGKCSS 196 (226)
T ss_dssp CSBCTTTCCBCBTTBCCE--ECTTTCCEECTTTCC
T ss_pred CCCCcCcCCCCCcccccc--ccCCCcCEeChhhcC
Confidence 468999999999886542 334444556666654
No 249
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=68.32 E-value=1 Score=43.08 Aligned_cols=7 Identities=29% Similarity=0.026 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 048750 241 EGAEKAA 247 (344)
Q Consensus 241 ~~A~~A~ 247 (344)
+.|.+.+
T Consensus 274 e~A~~fl 280 (449)
T 3iot_A 274 ELAKEFL 280 (449)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 250
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=63.51 E-value=2.2 Score=35.14 Aligned_cols=34 Identities=21% Similarity=0.598 Sum_probs=23.0
Q ss_pred cccccccCCCCceeeeecCCCCCCccceeeehhcc
Q 048750 7 YDKECKICTRPFTVFRWRPGRDARFKKTEICQTCS 41 (344)
Q Consensus 7 ~g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca 41 (344)
....|-+|..||+.+ +..|+.-..=++.||..|.
T Consensus 67 ~~~~C~~C~~~fg~l-~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLL-LNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGC-SSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccc-cCCCCcCCCCCchhhcccc
Confidence 467899999999954 5555544455555555555
No 251
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=58.79 E-value=1.9 Score=34.70 Aligned_cols=37 Identities=24% Similarity=0.634 Sum_probs=23.4
Q ss_pred cccccccCCCCceeeeecCCCCCCccceeeehhccccccccccccccC
Q 048750 7 YDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDL 54 (344)
Q Consensus 7 ~g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~~kn~cq~c~~dl 54 (344)
....|-+|..+|+ |-+..|+ +|..|. ++||+-|-...
T Consensus 54 ~~~~C~~C~~~~g-~l~~~g~--------~C~~C~--~~VC~~C~~~~ 90 (134)
T 1zbd_B 54 GVNRCILCGEQLG-MLGSASV--------VCEDCK--KNVCTKCGVET 90 (134)
T ss_dssp SSSBCSSSCCBCS-TTSCCEE--------ECTTTC--CEEETTSEEEC
T ss_pred CCccccccCCCcc-cccCCCC--------CCCCCC--cccccccCCcc
Confidence 3467999999997 6555554 555553 35555554444
No 252
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=56.60 E-value=3.8 Score=35.79 Aligned_cols=26 Identities=27% Similarity=0.786 Sum_probs=22.1
Q ss_pred ccccccccCCcC----CCCCCCCCCCCCCC
Q 048750 127 AHVCSFYVRGEC----TRGAECPYRHEMPV 152 (344)
Q Consensus 127 ~~~C~ff~~G~C----~rG~~Cpy~H~~p~ 152 (344)
=|+|.||+-|.| .++..|.|.|++-+
T Consensus 89 LHLCK~~l~G~C~~~~~~~~~Ck~SHdi~s 118 (229)
T 3u9g_A 89 LHLCKLNLLGRCHYAQSQRNLCKYSHDVLS 118 (229)
T ss_dssp BCCCHHHHTTCCGGGTCCSSCCSSCSCTTC
T ss_pred eeechhhhcCcCCcccCCCCCcccccccCc
Confidence 489999999999 35688999999864
No 253
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=51.42 E-value=4.9 Score=35.12 Aligned_cols=22 Identities=32% Similarity=0.996 Sum_probs=11.6
Q ss_pred cccccccCCcCCCCCCCCCCCCC
Q 048750 128 HVCSFYVRGECTRGAECPYRHEM 150 (344)
Q Consensus 128 ~~C~ff~~G~C~rG~~Cpy~H~~ 150 (344)
|||.+|.+|.|+. ..|...|..
T Consensus 176 HIC~~Fl~G~C~f-~~CkRsH~~ 197 (229)
T 3u9g_A 176 HICEHFTRGNCSY-LNCLRSHNL 197 (229)
T ss_dssp CSCHHHHTTCCCC-SSCSSCCCT
T ss_pred eccchhhcCCcCC-CCccCccCc
Confidence 5555555555555 455555543
No 254
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=51.28 E-value=4.5 Score=35.11 Aligned_cols=34 Identities=21% Similarity=0.450 Sum_probs=21.1
Q ss_pred ccccccCCCCceeeeecCCCCCCccceeeehhcccc
Q 048750 8 DKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKL 43 (344)
Q Consensus 8 g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~~ 43 (344)
+.+|-+|.++||+|+++= +-|.=--++|..|+..
T Consensus 161 ~~~C~~C~~~F~~~~rrh--hCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKH--HCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCE--ECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCccccc--ccCCcCCEEChHHhCC
Confidence 579999999999886542 2222233445554443
No 255
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=41.87 E-value=52 Score=22.78 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=40.6
Q ss_pred EEEecc-CCCCCCHHHHHHHhhcCC-----CeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeEECCeEEEEEEcC
Q 048750 196 TLYVGG-VDARITEQDLRDNFYAHG-----EIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK 267 (344)
Q Consensus 196 tLfVgn-L~~~~te~~L~~~F~~fG-----~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l~~~~~i~g~~l~V~~ak 267 (344)
+|||.. --..+...+|..++..-+ .|-.|.|. ..|.||+-... .|+.+++.|.+ ..+.|+.++|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~~-~~~~~~~~l~~-~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--DNASYVEILNG-KGPHVLKVMKN-TTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECTT-CHHHHHHHHTT-CCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--CCcEEEEECHH-HHHHHHHHhcc-ccCcCceEEEEECC
Confidence 566632 234556667777776443 46667775 46888888754 47778888855 48899999988654
No 256
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=41.09 E-value=9.5 Score=19.88 Aligned_cols=10 Identities=30% Similarity=1.032 Sum_probs=8.0
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
+|.+|.+.|+
T Consensus 4 ~C~~C~~~f~ 13 (29)
T 2m0e_A 4 KCPHCDKKFN 13 (29)
T ss_dssp CCSSCCCCCC
T ss_pred cCCCCCcccC
Confidence 6888888875
No 257
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=40.58 E-value=9.2 Score=19.76 Aligned_cols=10 Identities=40% Similarity=1.262 Sum_probs=7.9
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
+|.+|.+.|.
T Consensus 3 ~C~~C~k~f~ 12 (27)
T 1znf_A 3 KCGLCERSFV 12 (27)
T ss_dssp BCSSSCCBCS
T ss_pred cCCCCCCcCC
Confidence 5888888775
No 258
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=39.71 E-value=10 Score=19.95 Aligned_cols=10 Identities=20% Similarity=0.637 Sum_probs=8.2
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
+|.+|.+.|.
T Consensus 4 ~C~~C~k~f~ 13 (30)
T 1klr_A 4 QCQYCEFRSA 13 (30)
T ss_dssp CCSSSSCCCS
T ss_pred cCCCCCCccC
Confidence 6888988885
No 259
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.40 E-value=11 Score=27.11 Aligned_cols=37 Identities=27% Similarity=0.680 Sum_probs=27.0
Q ss_pred ccccccccCCCCceeeeecCCCCCCccceeeehhcccccccccccccc
Q 048750 6 DYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLD 53 (344)
Q Consensus 6 ~~g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~~kn~cq~c~~d 53 (344)
.-.+.|-.|.++|..+ +.+..+|+.|. ++||+-|-..
T Consensus 23 ~~~r~CarC~~~LG~l---------~~~g~~C~~Ck--~rVC~~Crv~ 59 (76)
T 2csz_A 23 YSDRTCARCQESLGRL---------SPKTNTCRGCN--HLVCRDCRIQ 59 (76)
T ss_dssp CCCCBCSSSCCBCSSS---------CTTTSEETTTT--EECCTTSEEE
T ss_pred CCccchhhhCcccccc---------ccCCCcCcccC--hhhccccccc
Confidence 3456899999999843 34566898886 5888888543
No 260
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=37.83 E-value=10 Score=19.84 Aligned_cols=10 Identities=50% Similarity=1.348 Sum_probs=8.0
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
+|.+|.+.|+
T Consensus 4 ~C~~C~~~f~ 13 (29)
T 1ard_A 4 VCEVCTRAFA 13 (29)
T ss_dssp BCTTTCCBCS
T ss_pred ECCCCCcccC
Confidence 6888888875
No 261
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=37.65 E-value=7.8 Score=20.35 Aligned_cols=10 Identities=30% Similarity=1.185 Sum_probs=8.2
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
+|.+|.+.|+
T Consensus 5 ~C~~C~k~f~ 14 (28)
T 2kvf_A 5 SCSVCGKRFS 14 (28)
T ss_dssp ECSSSCCEES
T ss_pred cCCCCCcccC
Confidence 6889998875
No 262
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=43.37 E-value=7.1 Score=20.20 Aligned_cols=11 Identities=27% Similarity=0.791 Sum_probs=8.5
Q ss_pred ccccCCCCcee
Q 048750 10 ECKICTRPFTV 20 (344)
Q Consensus 10 eckic~rpft~ 20 (344)
+|.+|.+.|+-
T Consensus 4 ~C~~C~k~f~~ 14 (26)
T 2lvu_A 4 VCERCGKRFVQ 14 (26)
Confidence 68889888763
No 263
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=35.61 E-value=12 Score=21.19 Aligned_cols=12 Identities=33% Similarity=0.794 Sum_probs=9.6
Q ss_pred cccccCCCCcee
Q 048750 9 KECKICTRPFTV 20 (344)
Q Consensus 9 ~eckic~rpft~ 20 (344)
-+|.+|.+.|+-
T Consensus 12 ~~C~~C~k~f~~ 23 (37)
T 1p7a_A 12 FQCPDCDRSFSR 23 (37)
T ss_dssp BCCTTTCCCBSS
T ss_pred ccCCCCCcccCc
Confidence 379999998863
No 264
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.39 E-value=12 Score=21.05 Aligned_cols=11 Identities=27% Similarity=0.966 Sum_probs=9.1
Q ss_pred cccccCCCCce
Q 048750 9 KECKICTRPFT 19 (344)
Q Consensus 9 ~eckic~rpft 19 (344)
-+|.+|.+.|+
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elr_A 10 HLCDMCGKKFK 20 (36)
T ss_dssp CBCTTTCCBCS
T ss_pred eecCcCCCCcC
Confidence 37999999886
No 265
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=33.81 E-value=15 Score=27.88 Aligned_cols=41 Identities=29% Similarity=0.692 Sum_probs=30.0
Q ss_pred ccccCCCCceeee-ecCCCCCCccceeeehhcccc-----ccccccc---cccCCC
Q 048750 10 ECKICTRPFTVFR-WRPGRDARFKKTEICQTCSKL-----KNVCQVC---LLDLEY 56 (344)
Q Consensus 10 eckic~rpft~f~-w~~~~~~~~~~t~ic~~ca~~-----kn~cq~c---~~dl~~ 56 (344)
-|-+|..||.+|- --| =|-..|..||.. -+.|--| +.+++.
T Consensus 3 fC~~C~~Pi~iygRmIP------CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIP------CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSEEEEEET------TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEEEeeecc------ccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 3889999999984 333 234899999954 4688888 556665
No 266
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.29 E-value=21 Score=24.54 Aligned_cols=47 Identities=21% Similarity=0.526 Sum_probs=33.9
Q ss_pred cccccccccCCCCceeeeecCCCCCCccceeeehhccccccccccccccCCC
Q 048750 5 ADYDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEY 56 (344)
Q Consensus 5 ~~~g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~~kn~cq~c~~dl~~ 56 (344)
+....+|.||---+..--+-|= ....+|..|+..-..|-.|-..++-
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pC-----gH~~~C~~C~~~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPC-----RHTCLCDGCVKYFQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTT-----TBCCSCTTHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECC-----CChhhhHHHHhcCCCCCCCCcchhc
Confidence 3457899999776655444451 1345899999988899999877764
No 267
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=33.11 E-value=92 Score=20.72 Aligned_cols=56 Identities=13% Similarity=0.047 Sum_probs=44.9
Q ss_pred ccEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHh
Q 048750 194 IKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEEL 250 (344)
Q Consensus 194 ~~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~A~~A~~~l 250 (344)
..++.|.++.-.-=...|.+.+.+ ..|..+.+....+-+.|.|.+.+....+++.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHHc
Confidence 457888888877777889999999 88999999887788889998666666677655
No 268
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=33.07 E-value=10 Score=19.85 Aligned_cols=10 Identities=40% Similarity=1.168 Sum_probs=7.7
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
+|.+|.+.|+
T Consensus 4 ~C~~C~k~f~ 13 (29)
T 2m0f_A 4 KCRECGKQFT 13 (29)
T ss_dssp ECTTTSCEES
T ss_pred cCCCCCCccC
Confidence 5888888775
No 269
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.82 E-value=11 Score=19.67 Aligned_cols=10 Identities=20% Similarity=0.793 Sum_probs=8.0
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
+|.+|.+.|.
T Consensus 5 ~C~~C~k~f~ 14 (27)
T 2kvh_A 5 SCSLCPQRSR 14 (27)
T ss_dssp ECSSSSCEES
T ss_pred cCCCcChhhC
Confidence 6889988775
No 270
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=32.70 E-value=14 Score=19.51 Aligned_cols=10 Identities=50% Similarity=1.321 Sum_probs=8.0
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
+|.+|.+.|.
T Consensus 4 ~C~~C~k~f~ 13 (30)
T 1paa_A 4 ACGLCNRAFT 13 (30)
T ss_dssp BCTTTCCBCS
T ss_pred CCcccCcccC
Confidence 6888888875
No 271
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=32.63 E-value=15 Score=20.46 Aligned_cols=10 Identities=30% Similarity=0.932 Sum_probs=7.8
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
+|.+|.+.|+
T Consensus 4 ~C~~C~k~F~ 13 (33)
T 1rim_A 4 ACPECPKRFM 13 (33)
T ss_dssp CCSSSCCCCS
T ss_pred cCCCCCchhC
Confidence 6888888775
No 272
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=32.15 E-value=11 Score=19.79 Aligned_cols=10 Identities=30% Similarity=0.932 Sum_probs=7.7
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
+|.+|.+.|+
T Consensus 4 ~C~~C~k~f~ 13 (29)
T 1rik_A 4 ACPECPKRFM 13 (29)
T ss_dssp ECSSSSCEES
T ss_pred cCCCCCchhC
Confidence 5888888775
No 273
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=31.76 E-value=15 Score=26.91 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=12.4
Q ss_pred cccccCCCCceeeeecC
Q 048750 9 KECKICTRPFTVFRWRP 25 (344)
Q Consensus 9 ~eckic~rpft~f~w~~ 25 (344)
-.|+||+|-|-.-..++
T Consensus 30 ~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 30 FPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp SSCSSSSSCCCHHHHHH
T ss_pred eccccccccccHhhccc
Confidence 36999999887655554
No 274
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=31.37 E-value=83 Score=20.39 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=41.8
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCC---HHHHHHHHHHh
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTT---REGAEKAAEEL 250 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~---~~~A~~A~~~l 250 (344)
.++.|.++.-.--...+...+.+...|.++.+....+-+.|.|.. .+....+++.+
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~ 62 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERA 62 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHT
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHc
Confidence 467778877666667889999999889999998888889999853 34445555543
No 275
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=37.33 E-value=10 Score=20.04 Aligned_cols=11 Identities=36% Similarity=1.072 Sum_probs=8.4
Q ss_pred ccccCCCCcee
Q 048750 10 ECKICTRPFTV 20 (344)
Q Consensus 10 eckic~rpft~ 20 (344)
+|.+|.+.|+-
T Consensus 4 ~C~~C~k~f~~ 14 (29)
T 2lvt_A 4 QCVMCGKAFTQ 14 (29)
Confidence 68888888753
No 276
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=30.67 E-value=12 Score=20.92 Aligned_cols=12 Identities=42% Similarity=0.910 Sum_probs=9.2
Q ss_pred cccccCCCCcee
Q 048750 9 KECKICTRPFTV 20 (344)
Q Consensus 9 ~eckic~rpft~ 20 (344)
-+|.+|.+.|+-
T Consensus 8 ~~C~~C~k~f~~ 19 (35)
T 1srk_A 8 FVCRICLSAFTT 19 (35)
T ss_dssp EECSSSCCEESS
T ss_pred eeCCCCCcccCC
Confidence 369999998863
No 277
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=29.97 E-value=11 Score=35.79 Aligned_cols=33 Identities=30% Similarity=0.634 Sum_probs=0.0
Q ss_pred cccccccCCCCceeeeecCCCCCCccceeeehhcccccccccccc
Q 048750 7 YDKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCL 51 (344)
Q Consensus 7 ~g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~~kn~cq~c~ 51 (344)
...+|-+|..+||+++.+ --|..|.+ -+|..|.
T Consensus 374 ~~~~c~~c~~~f~~~~r~----------h~Cr~Cg~--~~C~~Cs 406 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRR----------HHCHACGK--IVCRNCS 406 (434)
T ss_dssp ---------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchh----------hhcccCcC--EeehhhC
Confidence 356899999999987543 45666654 4666664
No 278
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=35.88 E-value=11 Score=19.90 Aligned_cols=11 Identities=36% Similarity=0.788 Sum_probs=8.6
Q ss_pred ccccCCCCcee
Q 048750 10 ECKICTRPFTV 20 (344)
Q Consensus 10 eckic~rpft~ 20 (344)
+|.+|.+.|+-
T Consensus 5 ~C~~C~k~f~~ 15 (30)
T 2lvr_A 5 VCIHCQRQFAD 15 (30)
Confidence 68899988763
No 279
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=29.53 E-value=18 Score=27.22 Aligned_cols=34 Identities=24% Similarity=0.727 Sum_probs=24.2
Q ss_pred cccccccCCC-CceeeeecCCCCCCccceeeehhcccccccccccccc
Q 048750 7 YDKECKICTR-PFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLD 53 (344)
Q Consensus 7 ~g~eckic~r-pft~f~w~~~~~~~~~~t~ic~~ca~~kn~cq~c~~d 53 (344)
.|..|..|.. |++=+||+ |..|... ..|+.|...
T Consensus 30 ~gv~Cd~C~~~pI~G~Ryk------------C~~C~d~-DLC~~C~~~ 64 (98)
T 2dip_A 30 LGIPCNNCKQFPIEGKCYK------------CTECIEY-HLCQECFDS 64 (98)
T ss_dssp CCCCCSSSCCSSCCSCEEE------------ESSSSSC-EEEHHHHHT
T ss_pred CCCCCcCCCCCCcccCeEE------------CCCCCCc-cHHHHHHcc
Confidence 4578999986 77777775 6677653 678888544
No 280
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.08 E-value=13 Score=20.80 Aligned_cols=11 Identities=18% Similarity=0.528 Sum_probs=8.8
Q ss_pred cccccCCCCce
Q 048750 9 KECKICTRPFT 19 (344)
Q Consensus 9 ~eckic~rpft 19 (344)
-+|.+|.+.|+
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elt_A 10 YKCPQCSYASA 20 (36)
T ss_dssp EECSSSSCEES
T ss_pred CCCCCCCcccC
Confidence 37999998875
No 281
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=28.86 E-value=15 Score=20.24 Aligned_cols=10 Identities=30% Similarity=0.996 Sum_probs=8.2
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
+|.+|.+.|+
T Consensus 4 ~C~~C~k~f~ 13 (32)
T 2kfq_A 4 ACPACPKRFM 13 (32)
T ss_dssp SSSSSCTTHH
T ss_pred CCCCCCcccC
Confidence 6888988876
No 282
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.86 E-value=8.8 Score=20.20 Aligned_cols=10 Identities=20% Similarity=0.750 Sum_probs=7.8
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
+|.+|++.|+
T Consensus 5 ~C~~C~k~f~ 14 (27)
T 2kvg_A 5 RCPLCRAGCP 14 (27)
T ss_dssp EETTTTEEES
T ss_pred CCCCCCcccC
Confidence 6888888775
No 283
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.89 E-value=14 Score=20.45 Aligned_cols=11 Identities=27% Similarity=0.884 Sum_probs=8.7
Q ss_pred cccccCCCCce
Q 048750 9 KECKICTRPFT 19 (344)
Q Consensus 9 ~eckic~rpft 19 (344)
-+|.+|.+.|+
T Consensus 8 ~~C~~C~k~f~ 18 (35)
T 2elx_A 8 YVCALCLKKFV 18 (35)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCcchhC
Confidence 36899998876
No 284
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.28 E-value=15 Score=20.68 Aligned_cols=10 Identities=20% Similarity=0.770 Sum_probs=8.4
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
+|.+|.+.|+
T Consensus 11 ~C~~C~k~f~ 20 (36)
T 2elq_A 11 KCSLCEYATR 20 (36)
T ss_dssp ECSSSSCEES
T ss_pred cCCCCCchhC
Confidence 6999998875
No 285
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.99 E-value=15 Score=19.26 Aligned_cols=10 Identities=40% Similarity=1.232 Sum_probs=7.7
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
.|.+|.+.|.
T Consensus 5 ~C~~C~~~f~ 14 (30)
T 2m0d_A 5 QCDYCGRSFS 14 (30)
T ss_dssp ECTTTCCEES
T ss_pred cCCCCCcccC
Confidence 5888888775
No 286
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.35 E-value=26 Score=20.48 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=9.6
Q ss_pred cccccCCCCcee
Q 048750 9 KECKICTRPFTV 20 (344)
Q Consensus 9 ~eckic~rpft~ 20 (344)
-+|.+|.+.|+-
T Consensus 12 ~~C~~C~k~f~~ 23 (42)
T 2eos_A 12 YPCEICGTRFRH 23 (42)
T ss_dssp BCCSSSCCCBSS
T ss_pred EECCCCCCccCC
Confidence 379999998864
No 287
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.25 E-value=18 Score=20.28 Aligned_cols=10 Identities=50% Similarity=1.378 Sum_probs=8.2
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
+|.+|.+.|+
T Consensus 11 ~C~~C~k~f~ 20 (36)
T 2elv_A 11 DCHICERKFK 20 (36)
T ss_dssp ECSSSCCEES
T ss_pred ECCCCCCccC
Confidence 6999998775
No 288
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.15 E-value=20 Score=20.40 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=8.4
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
+|.+|.+.|+
T Consensus 11 ~C~~C~k~f~ 20 (37)
T 2elm_A 11 YCSQCHYSSI 20 (37)
T ss_dssp ECSSSSCEEE
T ss_pred ECCCCCcccC
Confidence 6999999875
No 289
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.71 E-value=24 Score=20.46 Aligned_cols=12 Identities=25% Similarity=0.672 Sum_probs=9.3
Q ss_pred cccccCCCCcee
Q 048750 9 KECKICTRPFTV 20 (344)
Q Consensus 9 ~eckic~rpft~ 20 (344)
-+|.+|.+.|+-
T Consensus 11 ~~C~~C~k~f~~ 22 (42)
T 2yte_A 11 YSCAECKETFSD 22 (42)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCCccCC
Confidence 479999998863
No 290
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.69 E-value=25 Score=21.02 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=9.7
Q ss_pred cccccCCCCcee
Q 048750 9 KECKICTRPFTV 20 (344)
Q Consensus 9 ~eckic~rpft~ 20 (344)
-+|.+|.+.|+-
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2enf_A 13 YKCNECGKVFTQ 24 (46)
T ss_dssp CBCSSSCCBCSS
T ss_pred eECCCCCcccCC
Confidence 379999998874
No 291
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.66 E-value=26 Score=20.63 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=9.6
Q ss_pred cccccCCCCcee
Q 048750 9 KECKICTRPFTV 20 (344)
Q Consensus 9 ~eckic~rpft~ 20 (344)
-+|.+|.+.|+-
T Consensus 13 ~~C~~C~k~f~~ 24 (44)
T 2en7_A 13 YVCNECGKAFRS 24 (44)
T ss_dssp SCCTTTCCCCSS
T ss_pred eECCCCCCccCC
Confidence 479999998864
No 292
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.59 E-value=43 Score=23.14 Aligned_cols=46 Identities=22% Similarity=0.585 Sum_probs=31.6
Q ss_pred ccccccCCCCceeeeecCCCCCCccceeeehhccccccccccccccCCCCC
Q 048750 8 DKECKICTRPFTVFRWRPGRDARFKKTEICQTCSKLKNVCQVCLLDLEYGL 58 (344)
Q Consensus 8 g~eckic~rpft~f~w~~~~~~~~~~t~ic~~ca~~kn~cq~c~~dl~~~~ 58 (344)
..+|.||--.|.---.-| =..+..|..|++....|-.|-..++.-+
T Consensus 25 ~~~C~IC~~~~~~~~~~p-----CgH~~~C~~C~~~~~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVP-----CGHLVTCKQCAEAVDKCPMCYTVITFKQ 70 (75)
T ss_dssp HHSCSSSCSSCCCBCCSS-----SCCCCBCHHHHHHCSBCTTTCCBCCCCC
T ss_pred CCCCCcCCCCCCCEEEec-----CCCHHHHHHHhhCCCCCccCCceecCcE
Confidence 458999976664333333 2334579999998889999987776543
No 293
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.47 E-value=20 Score=20.25 Aligned_cols=11 Identities=27% Similarity=0.654 Sum_probs=8.7
Q ss_pred cccccCCCCce
Q 048750 9 KECKICTRPFT 19 (344)
Q Consensus 9 ~eckic~rpft 19 (344)
-+|.+|.+.|+
T Consensus 10 ~~C~~C~k~f~ 20 (37)
T 2elp_A 10 MKCPYCDFYFM 20 (37)
T ss_dssp EECSSSSCEEC
T ss_pred eECCCCChhhc
Confidence 36999998875
No 294
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.19 E-value=19 Score=20.20 Aligned_cols=10 Identities=30% Similarity=1.062 Sum_probs=8.2
Q ss_pred ccccCCCCce
Q 048750 10 ECKICTRPFT 19 (344)
Q Consensus 10 eckic~rpft 19 (344)
+|.+|.+.|+
T Consensus 11 ~C~~C~k~f~ 20 (36)
T 2els_A 11 TCEYCNKVFK 20 (36)
T ss_dssp ECTTTCCEES
T ss_pred ECCCCCceeC
Confidence 6899988775
No 295
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=22.91 E-value=19 Score=20.72 Aligned_cols=11 Identities=36% Similarity=1.032 Sum_probs=8.6
Q ss_pred ccccCCCCcee
Q 048750 10 ECKICTRPFTV 20 (344)
Q Consensus 10 eckic~rpft~ 20 (344)
+|.+|.+.|+-
T Consensus 8 ~C~~C~k~f~~ 18 (39)
T 1njq_A 8 TCSFCKREFRS 18 (39)
T ss_dssp ECTTTCCEESS
T ss_pred ECCCCCcccCC
Confidence 68889888753
No 296
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=22.41 E-value=41 Score=24.30 Aligned_cols=35 Identities=29% Similarity=0.719 Sum_probs=25.7
Q ss_pred cccccccCCC-CceeeeecCCCCCCccceeeehhcccc--cccccccccc
Q 048750 7 YDKECKICTR-PFTVFRWRPGRDARFKKTEICQTCSKL--KNVCQVCLLD 53 (344)
Q Consensus 7 ~g~eckic~r-pft~f~w~~~~~~~~~~t~ic~~ca~~--kn~cq~c~~d 53 (344)
.+-.|..|.+ |+.=+||+ |..|... =..|+.|..-
T Consensus 20 ~~~~Cd~C~~~pI~G~Ryk------------C~~C~d~~~yDLC~~C~~~ 57 (82)
T 2fc7_A 20 VGFKCDNCGIEPIQGVRWH------------CQDCPPEMSLDFCDSCSDC 57 (82)
T ss_dssp SSCCCSSSCCSSEESCEEE------------ESSSCSSSCCEEEGGGTTC
T ss_pred CcCCCCCCCCCcceeceEE------------CCcCCCCcceecHHHHHhC
Confidence 4778999996 88888886 6666552 3578888653
No 297
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.07 E-value=30 Score=20.67 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=9.7
Q ss_pred cccccCCCCcee
Q 048750 9 KECKICTRPFTV 20 (344)
Q Consensus 9 ~eckic~rpft~ 20 (344)
-+|.+|.+.|+-
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2yti_A 13 YKCNECGKVFTQ 24 (46)
T ss_dssp TCCSSSCCCCSS
T ss_pred eECCCCCcccCC
Confidence 479999998864
No 298
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.82 E-value=15 Score=20.70 Aligned_cols=11 Identities=27% Similarity=1.062 Sum_probs=8.5
Q ss_pred cccccCCCCce
Q 048750 9 KECKICTRPFT 19 (344)
Q Consensus 9 ~eckic~rpft 19 (344)
-+|.+|.+.|+
T Consensus 10 ~~C~~C~k~f~ 20 (37)
T 2elo_A 10 YSCPVCEKSFS 20 (37)
T ss_dssp CEETTTTEECS
T ss_pred cCCCCCCCccC
Confidence 36888988875
No 299
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.47 E-value=31 Score=20.62 Aligned_cols=12 Identities=42% Similarity=0.902 Sum_probs=9.7
Q ss_pred cccccCCCCcee
Q 048750 9 KECKICTRPFTV 20 (344)
Q Consensus 9 ~eckic~rpft~ 20 (344)
-+|.+|.+.|+.
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eoh_A 13 YECKECRKTFIQ 24 (46)
T ss_dssp CCCSSSCCCCSS
T ss_pred cCCCCcCchhCC
Confidence 479999998874
No 300
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.36 E-value=30 Score=20.75 Aligned_cols=12 Identities=33% Similarity=1.077 Sum_probs=9.7
Q ss_pred cccccCCCCcee
Q 048750 9 KECKICTRPFTV 20 (344)
Q Consensus 9 ~eckic~rpft~ 20 (344)
-+|.+|.+.|+.
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eon_A 13 YKCQVCGKAFRV 24 (46)
T ss_dssp CBCSSSCCBCSS
T ss_pred cCCCCCCcccCc
Confidence 369999998875
No 301
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=21.29 E-value=1.6e+02 Score=18.48 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=40.2
Q ss_pred cEEEeccCCCCCCHHHHHHHhhcCCCeeEEEEeCCCCEEEEEeCCH---HHHHHHHHHh
Q 048750 195 KTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTR---EGAEKAAEEL 250 (344)
Q Consensus 195 ~tLfVgnL~~~~te~~L~~~F~~fG~I~~v~i~~~kg~aFV~F~~~---~~A~~A~~~l 250 (344)
.++.|.++.-..-...+...+.....|.++.+....+.+.|.|... +....+++.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHc
Confidence 3567777766555667889999988899999998889999999743 3334455544
No 302
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.22 E-value=32 Score=20.48 Aligned_cols=12 Identities=33% Similarity=0.764 Sum_probs=9.5
Q ss_pred cccccCCCCcee
Q 048750 9 KECKICTRPFTV 20 (344)
Q Consensus 9 ~eckic~rpft~ 20 (344)
-+|.+|.+.|+-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ep1_A 13 YECSDCGKSFIK 24 (46)
T ss_dssp SCCSSSCCCCSS
T ss_pred cCCCCCCchhCC
Confidence 479999998863
No 303
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=20.57 E-value=24 Score=20.54 Aligned_cols=12 Identities=33% Similarity=0.697 Sum_probs=9.2
Q ss_pred cccccCCCCcee
Q 048750 9 KECKICTRPFTV 20 (344)
Q Consensus 9 ~eckic~rpft~ 20 (344)
-+|.+|.+.|+.
T Consensus 12 ~~C~~C~k~f~~ 23 (42)
T 2epc_A 12 YLCGQCGKSFTQ 23 (42)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCcccCC
Confidence 369999988763
No 304
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.27 E-value=33 Score=19.80 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=9.5
Q ss_pred cccccCCCCcee
Q 048750 9 KECKICTRPFTV 20 (344)
Q Consensus 9 ~eckic~rpft~ 20 (344)
-+|.+|++-|+-
T Consensus 12 ~~C~~C~k~f~~ 23 (42)
T 2ytb_A 12 YRCDQCGKAFSQ 23 (42)
T ss_dssp BCCTTTTCCBSS
T ss_pred eeCCCccchhCC
Confidence 479999998864
Done!