BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048751
(1004 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 36/79 (45%)
Query: 554 KAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVI 613
+ F +FK M P+E T+ + ++ D A D++ +M+ G +P+ ++ +
Sbjct: 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPAL 147
Query: 614 AAYARLGQLSNAVDLFHEM 632
+ R G A ++ M
Sbjct: 148 FGFCRKGDADKAYEVDAHM 166
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 9/134 (6%)
Query: 333 IDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTC---------GSHGNLSEAEAL 383
+D+ K G + +A ++ E ++GV + +N ++Y C + LS +
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 384 FCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQ 443
F M ++ P+ T+ L + A +++ G+ P + L C+
Sbjct: 93 FKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR 152
Query: 444 RNMVQEAEAVIIEM 457
+ +A V M
Sbjct: 153 KGDADKAYEVDAHM 166
>pdb|2ISS|A Chain A, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|B Chain B, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|C Chain C, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
Length = 313
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 64/258 (24%), Positives = 100/258 (38%), Gaps = 47/258 (18%)
Query: 349 FAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYAD 408
FAEM K GV +D T ++E +M R+ D +
Sbjct: 34 FAEMFKGGVIMDV--------TSAEQAKIAEEAGAVAVMALERVPADIRKE--------- 76
Query: 409 VGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLH-IDEH 467
G + A + KIRE + + + ++ + + AEA I +E+ G+ IDE
Sbjct: 77 -GGV-ARMASIAKIRE-------IMEAVSIPVMAKVRIGHIAEAKI--LEELGVDFIDES 125
Query: 468 SV--PGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTL---AAIIDVYAEKGLWAEAETV 522
V P + +IN+ H+ K+ F D G + + + AA+I E G E V
Sbjct: 126 EVLTPADDRFHINK---HEFKVPFVCGARDLGEALRRIAEGAAMIRTKGEAGTGNVVEAV 182
Query: 523 FYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFA 582
+ +R + K+ + + AYGK L + +K LG P V FA
Sbjct: 183 KHMRRVMEQIKQVTKMEDEELVAYGKE--IGAPVELLREVKRLGRLP--------VVNFA 232
Query: 583 GGDLMGQAVDLLAEMQGA 600
G + A L M GA
Sbjct: 233 AGGVATPADAALMMMLGA 250
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 30/125 (24%)
Query: 333 IDLYGKAGRLQ----DAANVFAEMLKS--GVAVDTITFNTMIYTCGSHGNLSEAEALFCM 386
ID Y +A LQ DA A LK VA +NT + C +H +
Sbjct: 257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD---------- 306
Query: 387 MEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPD-SVTQRAILHILCQRN 445
+ N L ++ + GNI A+R Y K EV FP+ + + +L Q+
Sbjct: 307 -----------SLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQG 353
Query: 446 MVQEA 450
+QEA
Sbjct: 354 KLQEA 358
>pdb|3LRB|A Chain A, Structure Of E. Coli Adic
pdb|3LRB|B Chain B, Structure Of E. Coli Adic
pdb|3LRC|A Chain A, Structure Of E. Coli Adic (P1)
pdb|3LRC|B Chain B, Structure Of E. Coli Adic (P1)
pdb|3LRC|C Chain C, Structure Of E. Coli Adic (P1)
pdb|3LRC|D Chain D, Structure Of E. Coli Adic (P1)
Length = 445
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 76/190 (40%), Gaps = 39/190 (20%)
Query: 742 QVDAVSFAAMMYLYKT---MGMLDEA--------IDAAEEMKLSGLLRDVISYNQVMACF 790
+ V AA+ Y+ T MGM+ A A M L ++S+ C
Sbjct: 228 TIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCL 287
Query: 791 ATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEA---VKQLQSSYQ--EV 845
+ G G L T K D+G F +F + K G P+ V L + +Q +
Sbjct: 288 GSLG-----GWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSI 342
Query: 846 KPYASE--AIITSVYSVVGLNALALGTCETLI--------KA-EAYLD----SFIYNVAI 890
P A++ +++SV SV+ L TC L+ KA AYL +F+Y I
Sbjct: 343 SPNATKEFGLVSSV-SVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLY--CI 399
Query: 891 YAFKSSGKND 900
+A SG +
Sbjct: 400 WAVVGSGAKE 409
>pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic
Length = 445
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 76/190 (40%), Gaps = 39/190 (20%)
Query: 742 QVDAVSFAAMMYLYKT---MGMLDEA--------IDAAEEMKLSGLLRDVISYNQVMACF 790
+ V AA+ Y+ T MGM+ A A M L ++S+ C
Sbjct: 228 TIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCL 287
Query: 791 ATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEA---VKQLQSSYQ--EV 845
+ G G L T K D+G F +F + K G P+ V L + +Q +
Sbjct: 288 GSLG-----GWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSI 342
Query: 846 KPYASE--AIITSVYSVVGLNALALGTCETLI--------KA-EAYLD----SFIYNVAI 890
P A++ +++SV SV+ L TC L+ KA AYL +F+Y I
Sbjct: 343 SPNATKEFGLVSSV-SVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLY--CI 399
Query: 891 YAFKSSGKND 900
+A SG +
Sbjct: 400 WAVVGSGAKE 409
>pdb|3OB6|A Chain A, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound
Conformation
pdb|3OB6|B Chain B, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound
Conformation
Length = 445
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 78/190 (41%), Gaps = 39/190 (20%)
Query: 742 QVDAVSFAAMMYLYKT---MGMLDEA---IDA-----AEEMKLSGLLRDVISYNQVMACF 790
+ V AA+ Y+ T MGM+ A + A A M L ++S+ C
Sbjct: 228 TIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCL 287
Query: 791 ATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEA---VKQLQSSYQ--EV 845
+ G G L T K D+G F +F + K G P+ V L + +Q +
Sbjct: 288 GSLG-----GWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSI 342
Query: 846 KPYASE--AIITSVYSVVGLNALALGTCETLI--------KA-EAYLD----SFIYNVAI 890
P A++ +++SV SV+ L TC L+ KA AYL +F+Y I
Sbjct: 343 SPNATKEFGLVSSV-SVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLY--CI 399
Query: 891 YAFKSSGKND 900
+A SG +
Sbjct: 400 WAVVGSGAKE 409
>pdb|3E4B|A Chain A, Crystal Structure Of Algk From Pseudomonas Fluorescens
Wcs374r
pdb|3E4B|B Chain B, Crystal Structure Of Algk From Pseudomonas Fluorescens
Wcs374r
pdb|3E4B|C Chain C, Crystal Structure Of Algk From Pseudomonas Fluorescens
Wcs374r
pdb|3E4B|D Chain D, Crystal Structure Of Algk From Pseudomonas Fluorescens
Wcs374r
Length = 452
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 750 AMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEM 806
A + LY+T G D+ +D E + + L I Y ++ + Q Q ELL +M
Sbjct: 146 AQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQM 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,361,322
Number of Sequences: 62578
Number of extensions: 1156951
Number of successful extensions: 2442
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2434
Number of HSP's gapped (non-prelim): 15
length of query: 1004
length of database: 14,973,337
effective HSP length: 108
effective length of query: 896
effective length of database: 8,214,913
effective search space: 7360562048
effective search space used: 7360562048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)