Query 048751
Match_columns 1004
No_of_seqs 800 out of 4731
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 12:46:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.9E-80 6.4E-85 756.3 75.2 677 166-954 48-727 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 8.8E-76 1.9E-80 716.9 76.9 671 137-919 55-727 (857)
3 PLN03218 maturation of RBCL 1; 100.0 8.5E-66 1.8E-70 612.0 69.9 471 326-844 437-909 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 9.4E-65 2E-69 603.1 70.0 548 321-989 365-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 2.1E-60 4.5E-65 567.3 55.8 515 166-817 84-612 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.2E-58 4.8E-63 549.9 58.0 465 141-708 95-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-44 3.5E-49 454.8 100.1 795 143-980 100-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4E-43 8.7E-48 442.2 98.3 803 139-985 62-869 (899)
9 PRK11447 cellulose synthase su 100.0 1.3E-27 2.8E-32 299.5 81.1 674 172-981 31-739 (1157)
10 PRK11447 cellulose synthase su 100.0 1.7E-27 3.6E-32 298.5 76.5 628 145-843 40-739 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 7.5E-24 1.6E-28 252.0 73.8 679 183-967 58-758 (987)
12 PRK09782 bacteriophage N4 rece 100.0 9.5E-24 2.1E-28 251.2 72.1 659 217-980 57-738 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.6E-23 3.4E-28 218.3 38.6 453 503-971 51-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 1.2E-23 2.5E-28 219.2 37.2 451 434-934 51-506 (966)
15 KOG2002 TPR-containing nuclear 99.9 3.2E-20 6.9E-25 205.0 63.6 648 326-987 41-750 (1018)
16 KOG2002 TPR-containing nuclear 99.9 2.5E-19 5.4E-24 198.0 68.2 600 342-985 146-801 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-17 2.6E-22 197.0 54.6 433 327-808 128-570 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 1E-17 2.2E-22 197.6 53.5 433 362-847 128-574 (615)
19 PRK11788 tetratricopeptide rep 99.9 5.9E-19 1.3E-23 197.8 34.8 309 581-934 45-363 (389)
20 PRK11788 tetratricopeptide rep 99.9 1.1E-18 2.4E-23 195.6 36.7 304 506-816 41-354 (389)
21 PRK15174 Vi polysaccharide exp 99.8 3.2E-17 6.8E-22 192.3 46.0 331 435-773 46-380 (656)
22 PRK15174 Vi polysaccharide exp 99.8 3.8E-17 8.3E-22 191.5 46.5 355 399-774 45-403 (656)
23 PRK10049 pgaA outer membrane p 99.8 7.3E-17 1.6E-21 193.6 47.1 418 467-920 16-462 (765)
24 PRK10049 pgaA outer membrane p 99.8 2.1E-16 4.5E-21 189.7 50.8 398 365-773 19-455 (765)
25 KOG2076 RNA polymerase III tra 99.8 1.9E-14 4.1E-19 159.0 60.1 642 332-991 145-858 (895)
26 KOG0495 HAT repeat protein [RN 99.8 2.1E-13 4.6E-18 144.5 64.8 499 322-845 376-881 (913)
27 KOG2076 RNA polymerase III tra 99.8 6.1E-14 1.3E-18 155.0 63.1 629 217-911 152-848 (895)
28 PRK14574 hmsH outer membrane p 99.8 2.6E-15 5.7E-20 175.7 55.8 441 323-773 31-512 (822)
29 KOG0495 HAT repeat protein [RN 99.8 3.6E-13 7.7E-18 142.8 63.7 589 322-945 281-878 (913)
30 KOG2003 TPR repeat-containing 99.8 1.8E-16 3.8E-21 159.9 36.7 479 432-933 202-709 (840)
31 PRK14574 hmsH outer membrane p 99.8 1.4E-14 3.1E-19 169.7 54.1 445 502-960 36-524 (822)
32 KOG4422 Uncharacterized conser 99.8 1.4E-13 3.1E-18 138.7 45.1 133 322-458 203-340 (625)
33 KOG4318 Bicoid mRNA stability 99.7 2.4E-13 5.2E-18 149.1 48.5 683 162-897 18-828 (1088)
34 KOG2003 TPR repeat-containing 99.7 1.9E-14 4.1E-19 145.4 34.3 481 329-830 204-709 (840)
35 KOG4422 Uncharacterized conser 99.7 4.3E-13 9.3E-18 135.3 43.6 365 532-948 203-591 (625)
36 KOG4318 Bicoid mRNA stability 99.7 2.9E-13 6.3E-18 148.5 43.4 688 190-982 11-808 (1088)
37 KOG1915 Cell cycle control pro 99.7 3.7E-11 7.9E-16 123.1 48.6 459 490-960 63-547 (677)
38 KOG1915 Cell cycle control pro 99.6 2.1E-10 4.5E-15 117.8 50.7 444 329-787 76-547 (677)
39 KOG0547 Translocase of outer m 99.6 1.5E-12 3.3E-17 133.8 33.7 414 438-911 122-565 (606)
40 PRK10747 putative protoheme IX 99.6 1.2E-12 2.6E-17 144.9 32.8 284 654-945 97-388 (398)
41 KOG1173 Anaphase-promoting com 99.6 2E-11 4.4E-16 128.4 39.6 503 430-961 15-530 (611)
42 KOG4162 Predicted calmodulin-b 99.6 7.1E-09 1.5E-13 113.7 59.7 524 406-986 237-787 (799)
43 TIGR00540 hemY_coli hemY prote 99.6 1.6E-12 3.4E-17 144.8 33.1 291 652-979 95-396 (409)
44 KOG0547 Translocase of outer m 99.6 3E-11 6.4E-16 124.6 37.6 419 326-773 115-565 (606)
45 KOG1155 Anaphase-promoting com 99.6 7.2E-11 1.6E-15 121.1 40.1 253 583-842 239-493 (559)
46 KOG0985 Vesicle coat protein c 99.6 2.8E-08 6.1E-13 111.0 61.4 124 399-525 609-749 (1666)
47 KOG2047 mRNA splicing factor [ 99.6 2.4E-08 5.1E-13 106.9 58.5 531 397-941 103-717 (835)
48 KOG1173 Anaphase-promoting com 99.6 6.4E-11 1.4E-15 124.7 38.8 511 327-927 17-531 (611)
49 KOG1155 Anaphase-promoting com 99.6 8.6E-11 1.9E-15 120.5 38.3 355 470-840 168-532 (559)
50 PRK10747 putative protoheme IX 99.6 2E-11 4.4E-16 135.1 36.7 283 513-808 97-389 (398)
51 TIGR00540 hemY_coli hemY prote 99.6 3E-11 6.4E-16 134.6 38.2 291 511-806 95-396 (409)
52 KOG3616 Selective LIM binding 99.5 1.6E-08 3.5E-13 109.0 55.0 580 332-979 738-1388(1636)
53 PF13429 TPR_15: Tetratricopep 99.5 5.6E-14 1.2E-18 148.6 13.2 258 681-944 13-274 (280)
54 KOG1126 DNA-binding cell divis 99.5 2E-12 4.3E-17 139.1 24.5 283 656-953 334-624 (638)
55 PF13429 TPR_15: Tetratricopep 99.5 1.4E-13 3E-18 145.7 13.2 260 506-771 14-274 (280)
56 KOG0985 Vesicle coat protein c 99.5 9.4E-08 2E-12 107.0 57.8 247 173-456 485-749 (1666)
57 KOG1156 N-terminal acetyltrans 99.5 4.3E-08 9.4E-13 105.5 52.6 603 328-985 10-691 (700)
58 COG3071 HemY Uncharacterized e 99.5 4.7E-10 1E-14 113.9 35.9 291 513-813 97-394 (400)
59 KOG1126 DNA-binding cell divis 99.5 1.2E-11 2.6E-16 133.1 25.2 203 603-811 418-622 (638)
60 COG2956 Predicted N-acetylgluc 99.5 1.3E-10 2.8E-15 113.9 29.7 253 585-844 49-311 (389)
61 KOG2047 mRNA splicing factor [ 99.5 4.2E-07 9.1E-12 97.6 62.8 272 532-808 345-650 (835)
62 KOG1156 N-terminal acetyltrans 99.5 2E-09 4.4E-14 115.5 40.3 466 476-985 17-514 (700)
63 COG2956 Predicted N-acetylgluc 99.4 1.6E-10 3.4E-15 113.3 28.5 286 654-980 48-345 (389)
64 KOG1127 TPR repeat-containing 99.4 4.7E-08 1E-12 109.8 50.4 633 323-980 489-1173(1238)
65 KOG3785 Uncharacterized conser 99.4 1.3E-08 2.9E-13 100.8 40.7 448 333-809 29-490 (557)
66 COG3071 HemY Uncharacterized e 99.4 6.5E-10 1.4E-14 112.9 32.3 284 654-980 97-388 (400)
67 KOG3616 Selective LIM binding 99.4 2.6E-07 5.7E-12 99.9 53.0 375 405-839 715-1129(1636)
68 KOG1127 TPR repeat-containing 99.4 4E-09 8.6E-14 118.1 39.3 581 375-981 472-1103(1238)
69 KOG4162 Predicted calmodulin-b 99.4 1.6E-08 3.5E-13 111.0 42.9 438 324-807 321-781 (799)
70 KOG1174 Anaphase-promoting com 99.4 2.3E-08 5E-13 101.4 40.0 287 617-911 207-499 (564)
71 KOG3785 Uncharacterized conser 99.4 8.6E-08 1.9E-12 95.2 42.7 412 368-806 29-454 (557)
72 KOG3617 WD40 and TPR repeat-co 99.3 6.3E-07 1.4E-11 98.5 50.3 412 326-806 726-1171(1416)
73 KOG2376 Signal recognition par 99.3 3.6E-08 7.7E-13 105.0 39.2 449 332-804 18-515 (652)
74 KOG1174 Anaphase-promoting com 99.3 3.8E-08 8.2E-13 99.9 36.7 308 637-953 190-504 (564)
75 PRK12370 invasion protein regu 99.3 2.7E-09 5.9E-14 123.7 31.7 213 691-945 319-533 (553)
76 PRK12370 invasion protein regu 99.3 6.4E-10 1.4E-14 128.9 26.3 248 690-982 275-535 (553)
77 KOG3617 WD40 and TPR repeat-co 99.3 1.5E-06 3.2E-11 95.7 49.3 267 123-492 711-993 (1416)
78 KOG2376 Signal recognition par 99.3 1.4E-07 3.1E-12 100.5 40.6 423 323-771 43-517 (652)
79 TIGR02521 type_IV_pilW type IV 99.3 3.7E-09 8E-14 109.1 28.2 200 605-807 30-230 (234)
80 PF12569 NARP1: NMDA receptor- 99.3 1E-07 2.2E-12 106.2 40.8 264 326-598 38-332 (517)
81 KOG1129 TPR repeat-containing 99.3 4.5E-10 9.7E-15 109.9 18.7 231 540-775 227-459 (478)
82 TIGR02521 type_IV_pilW type IV 99.2 3.1E-09 6.7E-14 109.6 26.5 98 710-808 30-127 (234)
83 KOG1840 Kinesin light chain [C 99.2 7.7E-09 1.7E-13 113.5 30.2 243 712-980 200-477 (508)
84 KOG0624 dsRNA-activated protei 99.2 2.1E-07 4.5E-12 92.3 34.6 398 534-1001 36-440 (504)
85 PRK11189 lipoprotein NlpI; Pro 99.2 8E-09 1.7E-13 109.3 27.2 233 655-923 40-275 (296)
86 PF12569 NARP1: NMDA receptor- 99.2 2.8E-07 6E-12 102.9 40.0 181 554-740 129-334 (517)
87 KOG1129 TPR repeat-containing 99.2 4.1E-09 8.9E-14 103.3 22.1 235 645-917 227-461 (478)
88 KOG1840 Kinesin light chain [C 99.2 7.4E-09 1.6E-13 113.6 26.3 243 677-945 200-477 (508)
89 COG3063 PilF Tfp pilus assembl 99.2 2.3E-08 4.9E-13 94.2 24.7 207 714-958 38-245 (250)
90 PF13041 PPR_2: PPR repeat fam 99.2 5.5E-11 1.2E-15 87.1 6.1 50 202-251 1-50 (50)
91 KOG0548 Molecular co-chaperone 99.2 1.5E-07 3.2E-12 99.7 32.9 386 403-809 9-455 (539)
92 PF13041 PPR_2: PPR repeat fam 99.1 1.3E-10 2.8E-15 85.2 6.5 43 328-370 5-47 (50)
93 KOG4340 Uncharacterized conser 99.1 1.4E-07 3E-12 91.6 26.4 318 465-805 9-335 (459)
94 PRK11189 lipoprotein NlpI; Pro 99.1 5.6E-08 1.2E-12 102.9 26.7 223 616-846 36-267 (296)
95 KOG0548 Molecular co-chaperone 99.1 9.3E-07 2E-11 93.8 34.5 436 438-929 9-471 (539)
96 KOG4340 Uncharacterized conser 99.1 3.7E-07 8E-12 88.7 28.5 244 334-596 86-335 (459)
97 COG3063 PilF Tfp pilus assembl 99.1 1.6E-07 3.5E-12 88.6 25.0 206 608-818 37-243 (250)
98 cd05804 StaR_like StaR_like; a 99.0 2.6E-06 5.6E-11 94.1 36.2 306 606-945 6-334 (355)
99 KOG0624 dsRNA-activated protei 99.0 1.3E-06 2.8E-11 86.8 28.7 296 473-775 45-371 (504)
100 cd05804 StaR_like StaR_like; a 98.9 5.2E-06 1.1E-10 91.8 36.6 205 497-704 3-214 (355)
101 KOG2053 Mitochondrial inherita 98.9 0.00025 5.3E-09 80.3 48.2 221 146-426 22-256 (932)
102 KOG1125 TPR repeat-containing 98.9 1.3E-07 2.7E-12 101.0 20.7 258 687-977 296-566 (579)
103 KOG2053 Mitochondrial inherita 98.9 0.00029 6.3E-09 79.8 45.4 161 820-983 441-609 (932)
104 KOG1914 mRNA cleavage and poly 98.9 0.0003 6.4E-09 75.0 44.9 439 319-808 13-500 (656)
105 KOG1125 TPR repeat-containing 98.8 8.2E-07 1.8E-11 95.0 21.4 218 583-807 297-525 (579)
106 PRK04841 transcriptional regul 98.7 3.3E-05 7.2E-10 97.1 38.6 338 503-843 344-719 (903)
107 PRK04841 transcriptional regul 98.7 2.7E-05 5.9E-10 97.8 37.4 157 441-598 384-558 (903)
108 PLN02789 farnesyltranstransfer 98.7 7.4E-06 1.6E-10 86.4 26.8 225 689-945 50-300 (320)
109 PLN02789 farnesyltranstransfer 98.7 7.9E-06 1.7E-10 86.2 26.8 223 717-979 43-299 (320)
110 PF04733 Coatomer_E: Coatomer 98.7 8.2E-07 1.8E-11 92.4 18.1 223 538-774 37-265 (290)
111 KOG1128 Uncharacterized conser 98.7 1.3E-06 2.9E-11 95.8 19.0 222 603-845 395-617 (777)
112 PF04733 Coatomer_E: Coatomer 98.7 7.7E-07 1.7E-11 92.6 16.7 223 609-843 38-264 (290)
113 KOG1128 Uncharacterized conser 98.6 8E-06 1.7E-10 89.9 23.0 216 573-808 400-615 (777)
114 KOG1914 mRNA cleavage and poly 98.6 0.0023 4.9E-08 68.6 43.2 212 552-765 309-530 (656)
115 TIGR03302 OM_YfiO outer membra 98.6 8E-06 1.7E-10 84.0 20.9 100 710-809 32-144 (235)
116 PF12854 PPR_1: PPR repeat 98.5 9.2E-08 2E-12 62.5 3.9 32 199-230 2-33 (34)
117 COG4783 Putative Zn-dependent 98.5 9.2E-05 2E-09 78.4 27.9 157 674-836 272-429 (484)
118 KOG1070 rRNA processing protei 98.5 4.2E-05 9E-10 89.9 27.2 204 573-779 1460-1668(1710)
119 TIGR03302 OM_YfiO outer membra 98.5 2.1E-05 4.6E-10 80.9 22.0 185 604-808 31-231 (235)
120 COG5010 TadD Flp pilus assembl 98.5 2.7E-05 5.9E-10 75.7 20.3 159 645-806 70-228 (257)
121 PF12854 PPR_1: PPR repeat 98.5 1.9E-07 4.1E-12 61.1 4.0 32 356-387 2-33 (34)
122 KOG1070 rRNA processing protei 98.5 9E-05 2E-09 87.2 27.5 209 603-816 1455-1670(1710)
123 PRK10370 formate-dependent nit 98.4 4E-05 8.7E-10 75.3 21.1 150 613-776 23-175 (198)
124 PRK10370 formate-dependent nit 98.4 4.2E-05 9E-10 75.2 21.1 156 648-818 23-181 (198)
125 PRK14720 transcript cleavage f 98.4 9.1E-05 2E-09 87.0 27.0 238 604-894 29-268 (906)
126 PRK14720 transcript cleavage f 98.4 9.5E-05 2.1E-09 86.8 26.6 236 467-756 32-268 (906)
127 COG5010 TadD Flp pilus assembl 98.4 6.9E-05 1.5E-09 73.0 20.3 161 610-773 70-230 (257)
128 PRK15179 Vi polysaccharide bio 98.4 0.00015 3.3E-09 84.5 27.2 132 640-773 85-216 (694)
129 KOG3081 Vesicle coat complex C 98.4 0.00019 4.1E-09 69.8 22.9 171 593-773 95-270 (299)
130 COG3898 Uncharacterized membra 98.3 0.0012 2.6E-08 67.6 29.2 307 643-993 84-403 (531)
131 PRK15179 Vi polysaccharide bio 98.3 0.00015 3.2E-09 84.6 26.5 135 672-809 82-217 (694)
132 KOG3081 Vesicle coat complex C 98.3 0.00062 1.3E-08 66.3 25.9 150 679-838 111-264 (299)
133 PRK15359 type III secretion sy 98.3 3.7E-05 8E-10 71.3 17.6 95 679-774 27-121 (144)
134 COG4783 Putative Zn-dependent 98.3 0.00038 8.2E-09 73.9 24.9 111 689-801 319-429 (484)
135 PRK15359 type III secretion sy 98.3 5.6E-05 1.2E-09 70.1 16.8 124 627-756 14-137 (144)
136 KOG3060 Uncharacterized conser 98.2 0.001 2.3E-08 64.2 24.1 184 621-808 27-219 (289)
137 KOG3060 Uncharacterized conser 98.2 0.00085 1.9E-08 64.8 23.5 170 654-827 25-200 (289)
138 TIGR02552 LcrH_SycD type III s 98.2 8.5E-05 1.9E-09 68.6 15.7 94 679-773 20-113 (135)
139 TIGR02552 LcrH_SycD type III s 98.1 0.00011 2.4E-09 67.8 15.9 118 698-819 5-122 (135)
140 PF07079 DUF1347: Protein of u 98.0 0.032 7E-07 58.9 44.5 187 540-745 132-332 (549)
141 KOG0550 Molecular chaperone (D 98.0 0.0026 5.6E-08 65.9 23.1 156 615-775 178-351 (486)
142 PF09976 TPR_21: Tetratricopep 97.9 0.00048 1E-08 64.2 16.3 115 724-840 24-143 (145)
143 KOG2041 WD40 repeat protein [G 97.9 0.021 4.5E-07 63.1 29.6 206 393-633 689-905 (1189)
144 TIGR00756 PPR pentatricopeptid 97.9 2.1E-05 4.5E-10 52.5 4.5 33 206-238 2-34 (35)
145 KOG2041 WD40 repeat protein [G 97.9 0.032 7E-07 61.6 30.3 154 585-772 748-905 (1189)
146 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00062 1.3E-08 73.4 17.4 119 682-806 175-294 (395)
147 TIGR00756 PPR pentatricopeptid 97.9 2.1E-05 4.6E-10 52.4 4.1 33 328-360 2-34 (35)
148 KOG0550 Molecular chaperone (D 97.8 0.006 1.3E-07 63.4 22.8 290 581-931 59-370 (486)
149 COG3898 Uncharacterized membra 97.8 0.057 1.2E-06 55.9 31.8 298 608-951 84-396 (531)
150 PF09976 TPR_21: Tetratricopep 97.8 0.00097 2.1E-08 62.2 15.8 115 689-805 24-143 (145)
151 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00068 1.5E-08 73.1 16.4 126 643-773 171-296 (395)
152 COG4700 Uncharacterized protei 97.8 0.0027 5.8E-08 58.2 16.8 137 840-980 81-220 (251)
153 PF13812 PPR_3: Pentatricopept 97.8 4.7E-05 1E-09 50.3 4.5 33 205-237 2-34 (34)
154 PF14938 SNAP: Soluble NSF att 97.7 0.0055 1.2E-07 64.5 22.1 92 885-977 157-258 (282)
155 PRK15363 pathogenicity island 97.7 0.00092 2E-08 60.8 13.6 96 713-809 37-132 (157)
156 PF13812 PPR_3: Pentatricopept 97.7 5.8E-05 1.3E-09 49.9 4.4 33 327-359 2-34 (34)
157 PRK15363 pathogenicity island 97.7 0.0012 2.7E-08 60.0 13.2 96 678-774 37-132 (157)
158 cd00189 TPR Tetratricopeptide 97.6 0.00089 1.9E-08 56.9 12.2 92 715-807 4-95 (100)
159 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.13 2.7E-06 54.4 35.3 89 318-409 34-122 (660)
160 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0018 4E-08 58.0 14.2 95 715-809 6-105 (119)
161 PF12895 Apc3: Anaphase-promot 97.6 0.00016 3.4E-09 60.0 6.0 80 724-805 2-83 (84)
162 KOG0553 TPR repeat-containing 97.6 0.00085 1.8E-08 66.9 11.8 95 687-784 92-186 (304)
163 cd00189 TPR Tetratricopeptide 97.6 0.0013 2.7E-08 56.0 12.0 95 679-774 3-97 (100)
164 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0027 5.8E-08 56.9 14.5 94 681-774 7-105 (119)
165 PRK02603 photosystem I assembl 97.5 0.0038 8.3E-08 60.2 16.2 88 678-765 37-126 (172)
166 PLN03088 SGT1, suppressor of 97.5 0.0023 4.9E-08 69.6 15.8 92 683-775 9-100 (356)
167 PF01535 PPR: PPR repeat; Int 97.5 0.00012 2.7E-09 47.0 3.7 30 206-235 2-31 (31)
168 PRK10866 outer membrane biogen 97.5 0.012 2.7E-07 59.8 20.0 198 711-945 32-239 (243)
169 KOG0553 TPR repeat-containing 97.5 0.0015 3.1E-08 65.3 12.5 101 719-823 89-190 (304)
170 KOG1130 Predicted G-alpha GTPa 97.5 0.0011 2.3E-08 68.3 11.7 270 613-911 24-343 (639)
171 PF12688 TPR_5: Tetratrico pep 97.5 0.0061 1.3E-07 53.7 14.9 90 684-773 9-103 (120)
172 PLN03088 SGT1, suppressor of 97.5 0.0029 6.3E-08 68.8 15.6 103 717-822 8-110 (356)
173 PF12895 Apc3: Anaphase-promot 97.5 0.00035 7.6E-09 57.9 6.6 81 689-770 2-83 (84)
174 PF01535 PPR: PPR repeat; Int 97.4 0.00016 3.6E-09 46.4 3.5 30 328-357 2-31 (31)
175 PF08579 RPM2: Mitochondrial r 97.4 0.0019 4.1E-08 54.3 10.4 30 414-443 87-116 (120)
176 PRK10866 outer membrane biogen 97.4 0.03 6.6E-07 57.0 21.4 204 744-981 31-240 (243)
177 PF14938 SNAP: Soluble NSF att 97.4 0.011 2.4E-07 62.3 18.1 95 329-424 117-224 (282)
178 CHL00033 ycf3 photosystem I as 97.3 0.0043 9.4E-08 59.6 13.7 93 677-769 36-137 (168)
179 PRK10153 DNA-binding transcrip 97.3 0.012 2.6E-07 66.9 19.0 66 781-848 421-486 (517)
180 COG4700 Uncharacterized protei 97.3 0.054 1.2E-06 50.0 18.9 131 674-806 87-219 (251)
181 PF13432 TPR_16: Tetratricopep 97.3 0.0009 2E-08 52.2 7.0 59 717-775 3-61 (65)
182 PF13414 TPR_11: TPR repeat; P 97.3 0.0011 2.5E-08 52.4 7.7 65 710-774 2-67 (69)
183 PF10037 MRP-S27: Mitochondria 97.3 0.0039 8.5E-08 67.6 14.0 123 567-689 62-186 (429)
184 PF14559 TPR_19: Tetratricopep 97.3 0.0011 2.4E-08 52.3 7.5 63 722-786 2-64 (68)
185 PF10037 MRP-S27: Mitochondria 97.3 0.0042 9.2E-08 67.3 13.6 124 356-479 61-186 (429)
186 PF08579 RPM2: Mitochondrial r 97.2 0.0034 7.5E-08 52.8 9.9 82 327-408 26-116 (120)
187 KOG2796 Uncharacterized conser 97.2 0.2 4.4E-06 49.1 23.0 142 643-786 179-325 (366)
188 PRK02603 photosystem I assembl 97.2 0.0095 2.1E-07 57.4 14.8 94 322-416 31-126 (172)
189 PF05843 Suf: Suppressor of fo 97.2 0.0099 2.1E-07 62.2 15.6 130 677-809 2-136 (280)
190 CHL00033 ycf3 photosystem I as 97.2 0.0076 1.6E-07 57.9 13.6 94 711-806 35-139 (168)
191 PF05843 Suf: Suppressor of fo 97.2 0.006 1.3E-07 63.8 13.5 132 433-565 3-136 (280)
192 PRK10153 DNA-binding transcrip 97.1 0.029 6.3E-07 63.8 19.4 88 728-819 401-490 (517)
193 KOG1130 Predicted G-alpha GTPa 97.1 0.01 2.2E-07 61.4 13.9 133 572-704 196-343 (639)
194 COG4235 Cytochrome c biogenesi 97.1 0.029 6.3E-07 56.7 16.6 101 674-775 154-257 (287)
195 KOG2114 Vacuolar assembly/sort 97.1 0.18 4E-06 57.6 24.3 148 501-667 369-516 (933)
196 PF06239 ECSIT: Evolutionarily 97.1 0.0067 1.4E-07 58.0 11.2 36 341-376 118-153 (228)
197 PF12688 TPR_5: Tetratrico pep 97.1 0.023 5E-07 50.1 13.9 90 749-840 5-100 (120)
198 PF13525 YfiO: Outer membrane 97.1 0.03 6.4E-07 55.6 16.6 180 716-939 10-199 (203)
199 COG4235 Cytochrome c biogenesi 97.0 0.047 1E-06 55.3 17.3 100 709-809 154-256 (287)
200 PF14559 TPR_19: Tetratricopep 97.0 0.0038 8.3E-08 49.2 7.9 63 477-542 2-64 (68)
201 KOG1538 Uncharacterized conser 97.0 0.093 2E-06 57.7 20.0 53 713-773 749-801 (1081)
202 PF06239 ECSIT: Evolutionarily 97.0 0.0089 1.9E-07 57.2 11.0 102 326-446 47-153 (228)
203 PF13432 TPR_16: Tetratricopep 97.0 0.0042 9.2E-08 48.3 7.7 63 682-745 3-65 (65)
204 PF07079 DUF1347: Protein of u 96.9 0.77 1.7E-05 49.0 43.0 122 140-265 13-154 (549)
205 KOG1538 Uncharacterized conser 96.9 0.14 3.1E-06 56.4 20.5 100 640-773 746-845 (1081)
206 PF13371 TPR_9: Tetratricopept 96.8 0.0075 1.6E-07 48.3 8.2 57 719-775 3-59 (73)
207 PRK10803 tol-pal system protei 96.8 0.028 6.1E-07 57.7 14.2 95 713-809 145-246 (263)
208 PRK15331 chaperone protein Sic 96.7 0.081 1.8E-06 48.7 15.0 91 717-808 43-133 (165)
209 PRK10803 tol-pal system protei 96.7 0.034 7.3E-07 57.1 13.6 98 678-775 145-247 (263)
210 KOG2796 Uncharacterized conser 96.6 0.49 1.1E-05 46.5 19.7 156 656-821 164-325 (366)
211 COG5107 RNA14 Pre-mRNA 3'-end 96.6 1.4 2.9E-05 47.0 35.4 79 166-247 39-117 (660)
212 PF04840 Vps16_C: Vps16, C-ter 96.6 1.3 2.9E-05 46.9 27.9 106 610-735 181-286 (319)
213 PF13281 DUF4071: Domain of un 96.5 0.44 9.5E-06 50.9 21.1 25 887-911 309-333 (374)
214 KOG1941 Acetylcholine receptor 96.5 0.25 5.4E-06 50.8 18.2 221 724-944 19-272 (518)
215 PF13525 YfiO: Outer membrane 96.5 0.5 1.1E-05 46.9 20.7 57 614-670 13-71 (203)
216 PF13414 TPR_11: TPR repeat; P 96.5 0.012 2.6E-07 46.4 7.5 65 676-741 3-68 (69)
217 KOG2114 Vacuolar assembly/sort 96.5 1.6 3.5E-05 50.3 26.0 117 328-456 336-456 (933)
218 PRK15331 chaperone protein Sic 96.3 0.11 2.4E-06 47.8 13.1 89 684-773 45-133 (165)
219 PF13281 DUF4071: Domain of un 96.3 0.61 1.3E-05 49.9 20.5 176 746-947 142-334 (374)
220 COG4785 NlpI Lipoprotein NlpI, 96.3 0.32 6.9E-06 46.4 16.1 181 721-911 75-265 (297)
221 KOG1941 Acetylcholine receptor 96.3 0.17 3.6E-06 52.0 15.2 223 755-977 16-270 (518)
222 PRK11906 transcriptional regul 96.2 0.1 2.2E-06 56.4 14.4 111 862-978 318-432 (458)
223 KOG1258 mRNA processing protei 96.2 2.8 6.2E-05 46.8 35.4 336 481-835 60-420 (577)
224 PF03704 BTAD: Bacterial trans 96.2 0.12 2.6E-06 48.2 13.3 68 714-781 65-137 (146)
225 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.17 3.6E-06 54.7 15.1 66 709-774 73-141 (453)
226 PF13371 TPR_9: Tetratricopept 96.1 0.043 9.2E-07 43.8 8.5 64 684-748 3-66 (73)
227 PF04840 Vps16_C: Vps16, C-ter 95.9 3 6.5E-05 44.3 31.6 110 643-771 179-288 (319)
228 COG0457 NrfG FOG: TPR repeat [ 95.8 2.5 5.4E-05 42.8 30.8 130 678-807 61-194 (291)
229 PF03704 BTAD: Bacterial trans 95.8 0.29 6.4E-06 45.5 14.2 73 746-819 63-140 (146)
230 PF13424 TPR_12: Tetratricopep 95.8 0.029 6.2E-07 45.6 6.4 60 713-772 7-73 (78)
231 PF10300 DUF3808: Protein of u 95.7 2.1 4.5E-05 48.6 23.0 85 725-809 247-334 (468)
232 KOG1585 Protein required for f 95.7 1 2.3E-05 43.9 17.0 202 713-941 33-250 (308)
233 COG0457 NrfG FOG: TPR repeat [ 95.7 2.8 6.2E-05 42.3 30.9 200 606-808 59-264 (291)
234 PF13424 TPR_12: Tetratricopep 95.6 0.022 4.7E-07 46.3 5.0 64 326-389 5-74 (78)
235 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.16 3.5E-06 54.8 12.6 70 319-390 68-141 (453)
236 KOG0543 FKBP-type peptidyl-pro 95.5 0.25 5.5E-06 52.1 13.3 139 647-808 214-354 (397)
237 COG4105 ComL DNA uptake lipopr 95.5 2 4.3E-05 42.9 18.7 183 721-945 44-231 (254)
238 COG1729 Uncharacterized protei 95.4 0.21 4.6E-06 50.0 11.9 96 713-809 144-244 (262)
239 PF13428 TPR_14: Tetratricopep 95.4 0.043 9.4E-07 38.5 5.1 41 713-753 3-43 (44)
240 PF13512 TPR_18: Tetratricopep 95.2 0.53 1.1E-05 42.4 12.7 76 717-792 16-94 (142)
241 PRK11906 transcriptional regul 95.1 1.4 3.1E-05 47.9 17.8 80 693-773 321-400 (458)
242 KOG0543 FKBP-type peptidyl-pro 95.0 0.44 9.5E-06 50.4 13.1 140 612-773 214-354 (397)
243 KOG1585 Protein required for f 95.0 2.8 6E-05 41.1 17.2 202 677-903 32-247 (308)
244 KOG2610 Uncharacterized conser 95.0 0.52 1.1E-05 48.0 12.9 153 653-807 115-274 (491)
245 KOG1550 Extracellular protein 94.9 9 0.0002 44.7 25.4 146 621-775 227-394 (552)
246 PF08631 SPO22: Meiosis protei 94.9 5.7 0.00012 41.6 25.4 101 713-815 86-192 (278)
247 KOG2280 Vacuolar assembly/sort 94.9 9.5 0.00021 43.9 33.3 99 425-525 426-532 (829)
248 COG3118 Thioredoxin domain-con 94.8 3 6.4E-05 42.5 17.6 50 617-667 145-194 (304)
249 COG4105 ComL DNA uptake lipopr 94.6 5.7 0.00012 39.8 22.1 202 746-991 35-242 (254)
250 PF10300 DUF3808: Protein of u 94.6 1.7 3.6E-05 49.4 17.7 115 689-806 246-373 (468)
251 KOG4555 TPR repeat-containing 94.5 0.73 1.6E-05 40.1 11.0 89 719-807 51-142 (175)
252 PF04053 Coatomer_WDAD: Coatom 94.5 1.1 2.3E-05 50.0 15.7 156 616-805 271-427 (443)
253 COG3118 Thioredoxin domain-con 94.4 3.4 7.3E-05 42.1 17.2 50 722-771 145-194 (304)
254 KOG2610 Uncharacterized conser 94.4 2.3 5E-05 43.6 15.9 151 720-872 112-271 (491)
255 PF04053 Coatomer_WDAD: Coatom 94.4 0.92 2E-05 50.5 14.9 154 371-595 271-426 (443)
256 KOG1258 mRNA processing protei 94.3 11 0.00024 42.3 37.7 184 640-827 296-487 (577)
257 PF12921 ATP13: Mitochondrial 94.3 0.49 1.1E-05 42.3 10.2 83 168-250 1-99 (126)
258 PF04184 ST7: ST7 protein; In 94.3 3.3 7.1E-05 45.3 17.9 122 654-787 213-338 (539)
259 KOG1920 IkappaB kinase complex 94.3 13 0.00028 45.2 24.1 27 538-564 792-820 (1265)
260 PF13428 TPR_14: Tetratricopep 94.3 0.11 2.4E-06 36.3 4.9 40 884-925 2-42 (44)
261 COG1729 Uncharacterized protei 94.2 0.67 1.4E-05 46.6 11.9 57 717-773 184-243 (262)
262 PF13431 TPR_17: Tetratricopep 94.1 0.051 1.1E-06 35.4 2.7 32 871-903 2-33 (34)
263 PF13431 TPR_17: Tetratricopep 94.1 0.067 1.5E-06 34.9 3.1 32 734-765 2-33 (34)
264 KOG1586 Protein required for f 94.0 6.5 0.00014 38.4 18.6 14 724-737 27-40 (288)
265 KOG4555 TPR repeat-containing 93.9 0.77 1.7E-05 40.0 9.9 92 475-566 52-145 (175)
266 KOG3941 Intermediate in Toll s 93.8 0.46 9.9E-06 47.2 9.5 104 324-446 65-173 (406)
267 COG3629 DnrI DNA-binding trans 93.8 0.28 6.2E-06 50.0 8.6 95 153-248 135-236 (280)
268 COG4785 NlpI Lipoprotein NlpI, 93.7 3.6 7.7E-05 39.6 14.8 182 755-946 75-265 (297)
269 smart00299 CLH Clathrin heavy 93.5 4.6 0.0001 37.1 15.7 115 132-264 6-121 (140)
270 PF13512 TPR_18: Tetratricopep 93.5 2.4 5.2E-05 38.3 12.8 54 858-911 20-75 (142)
271 PF10345 Cohesin_load: Cohesin 93.3 22 0.00048 42.2 44.0 48 722-769 372-428 (608)
272 smart00299 CLH Clathrin heavy 93.3 5.7 0.00012 36.5 16.0 84 173-264 11-94 (140)
273 PF13170 DUF4003: Protein of u 93.1 10 0.00022 39.8 18.9 83 657-741 78-173 (297)
274 PF12921 ATP13: Mitochondrial 93.0 1.4 3E-05 39.3 10.7 48 706-753 47-96 (126)
275 PF09613 HrpB1_HrpK: Bacterial 92.9 5.1 0.00011 37.1 14.2 72 722-795 21-93 (160)
276 COG4649 Uncharacterized protei 92.9 7.5 0.00016 36.1 14.9 121 688-808 70-195 (221)
277 PF06552 TOM20_plant: Plant sp 92.7 0.94 2E-05 42.3 9.3 95 832-929 8-124 (186)
278 PF04184 ST7: ST7 protein; In 92.5 20 0.00043 39.6 21.1 59 645-703 263-322 (539)
279 PF13176 TPR_7: Tetratricopept 92.2 0.28 6E-06 32.5 4.0 27 885-911 1-27 (36)
280 COG3629 DnrI DNA-binding trans 92.1 1.5 3.2E-05 45.0 10.9 78 712-789 154-236 (280)
281 KOG3941 Intermediate in Toll s 91.9 1.2 2.7E-05 44.3 9.6 33 624-656 141-173 (406)
282 KOG2280 Vacuolar assembly/sort 91.8 30 0.00065 40.1 33.7 100 354-455 425-531 (829)
283 PF08631 SPO22: Meiosis protei 90.9 23 0.0005 37.1 27.9 62 573-635 86-150 (278)
284 KOG1550 Extracellular protein 90.8 39 0.00084 39.5 25.7 129 538-672 290-428 (552)
285 PF00515 TPR_1: Tetratricopept 90.4 0.46 1E-05 30.8 3.7 32 884-917 2-33 (34)
286 KOG2066 Vacuolar assembly/sort 90.3 42 0.00091 39.2 28.6 54 211-266 363-419 (846)
287 KOG1920 IkappaB kinase complex 90.2 55 0.0012 40.3 30.4 108 713-839 941-1050(1265)
288 TIGR02561 HrpB1_HrpK type III 90.2 10 0.00022 34.5 12.8 53 723-775 22-74 (153)
289 PF09613 HrpB1_HrpK: Bacterial 90.1 9.9 0.00021 35.2 13.1 46 481-526 25-70 (160)
290 PF04097 Nic96: Nup93/Nic96; 89.9 9.2 0.0002 45.2 16.3 87 334-425 266-356 (613)
291 PF09205 DUF1955: Domain of un 89.8 14 0.0003 32.7 14.3 60 716-775 91-150 (161)
292 PF07035 Mic1: Colon cancer-as 89.6 18 0.0004 34.0 14.9 24 633-656 21-44 (167)
293 COG4649 Uncharacterized protei 89.3 19 0.0004 33.6 16.2 124 617-740 69-196 (221)
294 PF10602 RPN7: 26S proteasome 89.3 2.8 6.1E-05 40.2 9.6 101 884-984 37-144 (177)
295 PF07719 TPR_2: Tetratricopept 89.1 0.66 1.4E-05 30.0 3.7 31 885-917 3-33 (34)
296 KOG2396 HAT (Half-A-TPR) repea 89.1 40 0.00087 37.2 36.6 98 709-808 457-558 (568)
297 KOG4234 TPR repeat-containing 88.8 5.3 0.00012 37.9 10.4 56 719-774 142-197 (271)
298 PF13176 TPR_7: Tetratricopept 88.8 0.94 2E-05 29.9 4.2 24 748-771 2-25 (36)
299 PF10345 Cohesin_load: Cohesin 88.7 59 0.0013 38.7 40.3 129 329-458 103-252 (608)
300 KOG4234 TPR repeat-containing 88.6 15 0.00033 35.0 13.1 102 649-751 103-208 (271)
301 COG2909 MalT ATP-dependent tra 88.5 62 0.0013 38.6 28.0 58 886-943 621-684 (894)
302 PF06552 TOM20_plant: Plant sp 88.4 4.4 9.4E-05 38.1 9.5 27 797-825 97-123 (186)
303 PF02259 FAT: FAT domain; Int 88.0 44 0.00096 36.4 23.4 65 395-459 145-212 (352)
304 PRK11619 lytic murein transgly 87.9 66 0.0014 38.2 41.5 253 654-919 254-512 (644)
305 COG2976 Uncharacterized protei 87.3 26 0.00056 33.6 13.9 22 751-772 132-153 (207)
306 COG2976 Uncharacterized protei 87.0 23 0.0005 33.9 13.4 56 889-946 132-187 (207)
307 KOG0403 Neoplastic transformat 86.9 50 0.0011 35.8 23.4 72 716-791 514-585 (645)
308 PF04097 Nic96: Nup93/Nic96; 86.9 74 0.0016 37.7 22.5 23 891-916 513-535 (613)
309 PF10602 RPN7: 26S proteasome 86.7 8.6 0.00019 36.9 11.1 61 608-668 38-100 (177)
310 KOG2062 26S proteasome regulat 86.4 72 0.0016 37.1 38.2 63 344-407 41-106 (929)
311 KOG2396 HAT (Half-A-TPR) repea 86.4 58 0.0013 36.0 38.7 101 778-911 457-558 (568)
312 PF07719 TPR_2: Tetratricopept 85.9 2.4 5.3E-05 27.2 5.0 26 748-773 4-29 (34)
313 KOG4642 Chaperone-dependent E3 85.9 13 0.00029 36.5 11.5 117 861-980 23-144 (284)
314 PF09205 DUF1955: Domain of un 85.3 26 0.00057 31.1 13.6 57 649-706 94-150 (161)
315 PF13170 DUF4003: Protein of u 85.0 55 0.0012 34.5 19.1 61 900-960 160-224 (297)
316 PF00515 TPR_1: Tetratricopept 84.8 2.2 4.9E-05 27.5 4.4 27 747-773 3-29 (34)
317 PF13929 mRNA_stabil: mRNA sta 84.7 23 0.00049 36.4 13.2 75 153-227 186-261 (292)
318 PF02259 FAT: FAT domain; Int 84.4 67 0.0014 35.0 25.3 65 640-704 145-212 (352)
319 TIGR02561 HrpB1_HrpK type III 84.0 27 0.00058 31.9 11.8 19 508-526 52-70 (153)
320 KOG1586 Protein required for f 83.6 48 0.001 32.7 19.9 21 790-810 164-184 (288)
321 KOG0276 Vesicle coat complex C 83.5 8.5 0.00018 43.0 10.2 95 409-527 599-693 (794)
322 PF07035 Mic1: Colon cancer-as 83.5 40 0.00087 31.8 15.4 36 346-381 14-49 (167)
323 KOG0276 Vesicle coat complex C 82.2 13 0.00027 41.7 10.9 81 326-421 666-746 (794)
324 PF13181 TPR_8: Tetratricopept 82.1 1.9 4.2E-05 27.8 3.2 27 885-911 3-29 (34)
325 KOG4648 Uncharacterized conser 81.5 9.3 0.0002 39.4 9.0 95 647-743 103-197 (536)
326 KOG1464 COP9 signalosome, subu 81.2 64 0.0014 32.4 17.0 68 391-458 21-92 (440)
327 KOG2471 TPR repeat-containing 81.2 26 0.00056 38.3 12.4 78 885-964 285-380 (696)
328 PF13374 TPR_10: Tetratricopep 80.7 3.1 6.6E-05 28.3 4.0 28 884-911 3-30 (42)
329 KOG2066 Vacuolar assembly/sort 80.2 1.3E+02 0.0028 35.4 29.1 22 647-668 511-532 (846)
330 KOG4648 Uncharacterized conser 79.6 9.2 0.0002 39.5 8.3 92 611-705 102-194 (536)
331 COG1747 Uncharacterized N-term 79.4 1.1E+02 0.0024 34.1 25.5 178 570-755 65-249 (711)
332 PF00637 Clathrin: Region in C 79.1 0.54 1.2E-05 43.6 -0.4 53 403-455 14-66 (143)
333 KOG1464 COP9 signalosome, subu 77.6 83 0.0018 31.7 19.7 258 725-988 41-338 (440)
334 PF13174 TPR_6: Tetratricopept 77.5 5.1 0.00011 25.4 4.1 23 751-773 6-28 (33)
335 KOG2471 TPR repeat-containing 77.3 74 0.0016 35.1 14.3 42 887-929 339-380 (696)
336 PF13374 TPR_10: Tetratricopep 76.7 6 0.00013 26.8 4.6 26 747-772 4-29 (42)
337 PF11207 DUF2989: Protein of u 76.7 27 0.00059 33.7 10.1 71 866-937 124-197 (203)
338 COG1747 Uncharacterized N-term 76.7 1.3E+02 0.0028 33.5 24.9 178 395-580 65-248 (711)
339 KOG4570 Uncharacterized conser 76.6 32 0.00069 35.4 10.9 48 656-703 115-162 (418)
340 PF13174 TPR_6: Tetratricopept 76.6 2.5 5.4E-05 26.9 2.4 26 886-911 3-28 (33)
341 KOG4570 Uncharacterized conser 76.4 8.3 0.00018 39.4 6.8 51 550-600 114-164 (418)
342 COG3947 Response regulator con 76.3 97 0.0021 31.8 16.3 60 713-772 281-340 (361)
343 cd00923 Cyt_c_Oxidase_Va Cytoc 75.4 25 0.00054 29.3 8.0 46 694-739 25-70 (103)
344 KOG0890 Protein kinase of the 75.0 3.2E+02 0.0069 37.1 32.2 61 817-878 1672-1732(2382)
345 COG4455 ImpE Protein of avirul 74.7 22 0.00047 34.6 8.7 75 715-789 5-81 (273)
346 PF08424 NRDE-2: NRDE-2, neces 74.5 1.3E+02 0.0028 32.3 18.5 118 693-811 48-185 (321)
347 COG4455 ImpE Protein of avirul 74.4 16 0.00035 35.5 7.8 67 858-927 11-81 (273)
348 PF08424 NRDE-2: NRDE-2, neces 74.2 1.3E+02 0.0028 32.3 20.1 80 727-807 47-129 (321)
349 KOG2063 Vacuolar assembly/sort 74.1 1.4E+02 0.0031 36.4 17.2 27 328-354 506-532 (877)
350 cd00923 Cyt_c_Oxidase_Va Cytoc 73.3 22 0.00047 29.6 7.2 63 185-248 23-85 (103)
351 KOG4507 Uncharacterized conser 73.2 19 0.00041 40.2 9.0 100 811-911 603-704 (886)
352 PRK09687 putative lyase; Provi 73.1 1.3E+02 0.0027 31.6 27.9 73 744-825 205-277 (280)
353 PRK09687 putative lyase; Provi 72.7 1.3E+02 0.0028 31.5 28.0 136 640-790 141-277 (280)
354 PF02284 COX5A: Cytochrome c o 72.2 23 0.0005 29.8 7.2 48 694-741 28-75 (108)
355 PF13181 TPR_8: Tetratricopept 72.2 8.4 0.00018 24.6 4.1 25 715-739 5-29 (34)
356 PF07721 TPR_4: Tetratricopept 72.0 5.7 0.00012 23.8 2.9 23 885-907 3-25 (26)
357 PF09986 DUF2225: Uncharacteri 71.9 71 0.0015 31.8 12.3 46 867-912 144-194 (214)
358 PF02284 COX5A: Cytochrome c o 71.8 25 0.00055 29.6 7.4 62 187-249 28-89 (108)
359 PF14561 TPR_20: Tetratricopep 71.8 44 0.00095 27.8 9.1 64 732-795 9-73 (90)
360 PRK15180 Vi polysaccharide bio 71.7 1.6E+02 0.0035 32.3 29.2 118 479-599 302-419 (831)
361 PF11207 DUF2989: Protein of u 71.3 36 0.00077 33.0 9.5 19 780-798 178-196 (203)
362 PF13929 mRNA_stabil: mRNA sta 70.4 1.2E+02 0.0026 31.4 13.4 126 139-264 134-263 (292)
363 COG5159 RPN6 26S proteasome re 69.0 66 0.0014 32.7 10.9 49 647-695 9-64 (421)
364 COG0790 FOG: TPR repeat, SEL1 68.2 1.6E+02 0.0035 30.9 22.6 46 729-776 173-222 (292)
365 COG2909 MalT ATP-dependent tra 67.8 2.8E+02 0.0061 33.5 33.5 221 618-841 427-685 (894)
366 PRK10941 hypothetical protein; 66.6 75 0.0016 32.9 11.5 61 715-775 185-245 (269)
367 KOG4642 Chaperone-dependent E3 66.2 87 0.0019 31.2 10.9 82 688-771 22-104 (284)
368 PRK11619 lytic murein transgly 65.4 3E+02 0.0064 32.9 41.6 137 336-482 43-179 (644)
369 smart00028 TPR Tetratricopepti 65.3 11 0.00024 22.9 3.7 27 885-911 3-29 (34)
370 PRK15180 Vi polysaccharide bio 65.3 2.2E+02 0.0048 31.4 29.9 86 407-494 334-419 (831)
371 PF04190 DUF410: Protein of un 64.7 1.8E+02 0.0038 30.1 18.4 28 497-524 87-114 (260)
372 PF14561 TPR_20: Tetratricopep 64.7 54 0.0012 27.2 8.3 65 487-551 9-73 (90)
373 PF07721 TPR_4: Tetratricopept 64.4 10 0.00022 22.7 3.0 21 208-228 5-25 (26)
374 KOG4507 Uncharacterized conser 64.1 41 0.0009 37.7 9.3 150 429-582 569-721 (886)
375 KOG2063 Vacuolar assembly/sort 62.1 3.8E+02 0.0081 32.9 20.9 39 685-723 600-638 (877)
376 TIGR02508 type_III_yscG type I 61.1 68 0.0015 27.0 7.8 52 752-809 46-97 (115)
377 TIGR03504 FimV_Cterm FimV C-te 60.2 22 0.00047 24.8 4.2 25 332-356 5-29 (44)
378 PF00637 Clathrin: Region in C 60.1 3.2 6.9E-05 38.3 0.3 84 175-265 13-96 (143)
379 COG3947 Response regulator con 60.0 2.2E+02 0.0047 29.5 15.4 59 503-563 282-340 (361)
380 TIGR03504 FimV_Cterm FimV C-te 59.8 23 0.00049 24.7 4.3 23 751-773 5-27 (44)
381 PF09477 Type_III_YscG: Bacter 58.9 1E+02 0.0022 26.3 8.6 74 727-806 22-95 (116)
382 PF09477 Type_III_YscG: Bacter 58.9 1.2E+02 0.0025 26.0 10.1 81 146-234 19-99 (116)
383 PF09670 Cas_Cas02710: CRISPR- 58.7 1.5E+02 0.0032 32.7 12.8 58 751-809 137-198 (379)
384 TIGR02508 type_III_yscG type I 58.2 66 0.0014 27.0 7.3 80 147-234 19-98 (115)
385 PF13762 MNE1: Mitochondrial s 57.5 1.6E+02 0.0034 27.1 10.7 90 163-252 31-128 (145)
386 PF07575 Nucleopor_Nup85: Nup8 56.7 3.7E+02 0.008 31.6 16.5 27 361-388 149-175 (566)
387 PF09986 DUF2225: Uncharacteri 56.0 85 0.0018 31.2 9.5 92 895-986 89-198 (214)
388 PF10579 Rapsyn_N: Rapsyn N-te 55.6 39 0.00084 27.0 5.4 47 895-941 18-66 (80)
389 COG4715 Uncharacterized conser 55.6 3.6E+02 0.0078 30.7 19.7 101 678-785 305-408 (587)
390 PF14853 Fis1_TPR_C: Fis1 C-te 54.8 49 0.0011 24.2 5.5 36 887-924 5-40 (53)
391 smart00386 HAT HAT (Half-A-TPR 54.8 29 0.00063 21.5 4.2 29 725-753 1-29 (33)
392 PF07575 Nucleopor_Nup85: Nup8 54.3 3.1E+02 0.0066 32.3 15.4 25 168-193 148-172 (566)
393 PRK10941 hypothetical protein; 54.1 1.1E+02 0.0024 31.6 10.2 71 473-543 188-258 (269)
394 smart00028 TPR Tetratricopepti 53.9 28 0.00061 20.9 4.1 23 750-772 6-28 (34)
395 PF10579 Rapsyn_N: Rapsyn N-te 53.5 38 0.00083 27.0 5.1 46 757-802 18-65 (80)
396 PF07163 Pex26: Pex26 protein; 52.5 1.6E+02 0.0034 30.3 10.3 19 686-704 128-146 (309)
397 PF07163 Pex26: Pex26 protein; 51.0 3E+02 0.0065 28.4 13.1 116 859-976 46-181 (309)
398 PF10366 Vps39_1: Vacuolar sor 50.4 1.6E+02 0.0035 25.5 9.1 27 328-354 41-67 (108)
399 KOG2034 Vacuolar sorting prote 50.3 5.4E+02 0.012 31.2 25.3 45 613-666 511-555 (911)
400 KOG0545 Aryl-hydrocarbon recep 47.6 2.1E+02 0.0046 28.7 10.1 118 781-917 179-296 (329)
401 COG5159 RPN6 26S proteasome re 47.2 3.4E+02 0.0073 27.9 16.9 94 680-773 129-234 (421)
402 KOG0376 Serine-threonine phosp 45.8 42 0.00091 36.9 5.8 104 683-790 11-115 (476)
403 cd08819 CARD_MDA5_2 Caspase ac 45.6 1.2E+02 0.0026 24.9 6.9 67 902-974 21-87 (88)
404 PF14853 Fis1_TPR_C: Fis1 C-te 45.3 50 0.0011 24.2 4.4 32 716-747 6-37 (53)
405 KOG4521 Nuclear pore complex, 45.1 5.9E+02 0.013 32.0 15.0 84 746-832 984-1071(1480)
406 KOG4279 Serine/threonine prote 44.9 2.5E+02 0.0053 33.0 11.5 23 757-781 299-321 (1226)
407 cd00280 TRFH Telomeric Repeat 44.5 2.9E+02 0.0064 26.4 11.6 67 185-254 85-158 (200)
408 KOG0890 Protein kinase of the 44.4 1E+03 0.022 32.8 41.1 117 331-457 1388-1509(2382)
409 PF12862 Apc5: Anaphase-promot 44.4 1.5E+02 0.0033 24.8 7.9 25 504-528 45-69 (94)
410 KOG0991 Replication factor C, 43.8 3.5E+02 0.0075 27.1 12.0 145 746-920 131-276 (333)
411 KOG3807 Predicted membrane pro 43.6 4.1E+02 0.0089 27.9 11.9 52 888-941 280-334 (556)
412 COG0790 FOG: TPR repeat, SEL1 43.5 4.1E+02 0.0089 27.8 25.2 46 694-742 173-222 (292)
413 KOG1114 Tripeptidyl peptidase 43.4 7.1E+02 0.015 30.5 16.5 66 869-934 1217-1283(1304)
414 KOG4279 Serine/threonine prote 43.3 2.4E+02 0.0052 33.1 11.1 175 745-924 201-405 (1226)
415 PHA02875 ankyrin repeat protei 43.2 5.1E+02 0.011 28.9 15.0 139 336-490 9-156 (413)
416 KOG4077 Cytochrome c oxidase, 42.6 1.6E+02 0.0035 26.1 7.5 43 698-740 71-113 (149)
417 PF12862 Apc5: Anaphase-promot 42.3 1.4E+02 0.003 25.0 7.4 22 751-772 47-68 (94)
418 PRK10564 maltose regulon perip 41.9 49 0.0011 34.3 5.3 43 201-243 253-296 (303)
419 PF14669 Asp_Glu_race_2: Putat 41.8 3.3E+02 0.0072 26.3 12.5 23 643-665 183-205 (233)
420 KOG2908 26S proteasome regulat 41.7 2.8E+02 0.0062 29.3 10.5 87 328-414 77-175 (380)
421 PF13762 MNE1: Mitochondrial s 41.6 2.8E+02 0.0062 25.5 10.4 94 350-443 26-127 (145)
422 PF04190 DUF410: Protein of un 41.2 4.2E+02 0.0091 27.3 19.0 26 604-629 88-113 (260)
423 KOG0376 Serine-threonine phosp 41.0 55 0.0012 36.1 5.8 99 647-748 10-109 (476)
424 KOG3364 Membrane protein invol 40.6 2.8E+02 0.0061 25.1 9.9 70 429-498 30-103 (149)
425 KOG1308 Hsp70-interacting prot 40.5 21 0.00045 37.3 2.4 90 829-919 128-218 (377)
426 KOG1308 Hsp70-interacting prot 40.5 30 0.00064 36.2 3.5 89 723-813 126-215 (377)
427 PHA02875 ankyrin repeat protei 39.9 4.9E+02 0.011 29.0 13.9 71 372-450 10-84 (413)
428 COG5187 RPN7 26S proteasome re 39.9 4.4E+02 0.0096 27.2 11.4 100 884-983 116-222 (412)
429 PF11846 DUF3366: Domain of un 39.5 83 0.0018 30.7 6.6 35 950-984 141-175 (193)
430 KOG2659 LisH motif-containing 39.1 2.1E+02 0.0046 28.4 8.9 95 882-979 25-129 (228)
431 KOG4077 Cytochrome c oxidase, 38.9 1E+02 0.0023 27.2 5.9 55 906-961 72-126 (149)
432 KOG0551 Hsp90 co-chaperone CNS 38.2 2.2E+02 0.0048 30.0 9.1 93 681-773 86-181 (390)
433 KOG0687 26S proteasome regulat 37.8 5.2E+02 0.011 27.3 14.2 39 885-923 106-148 (393)
434 PRK13800 putative oxidoreducta 37.4 9.4E+02 0.02 30.3 28.5 18 779-796 788-805 (897)
435 COG4259 Uncharacterized protei 37.2 1.9E+02 0.0042 24.3 6.8 54 869-924 58-111 (121)
436 PF10366 Vps39_1: Vacuolar sor 36.8 1.1E+02 0.0024 26.4 6.1 29 954-982 40-68 (108)
437 PF11848 DUF3368: Domain of un 36.3 1.1E+02 0.0025 21.7 5.0 33 215-247 13-45 (48)
438 KOG2297 Predicted translation 36.2 5.2E+02 0.011 27.0 20.3 21 641-661 321-341 (412)
439 KOG2422 Uncharacterized conser 35.3 7.5E+02 0.016 28.5 16.3 93 648-740 349-448 (665)
440 KOG3364 Membrane protein invol 35.2 3.5E+02 0.0075 24.6 11.3 68 742-809 29-100 (149)
441 PRK13342 recombination factor 35.0 6.9E+02 0.015 28.0 19.4 21 759-779 244-264 (413)
442 KOG0530 Protein farnesyltransf 34.7 5.2E+02 0.011 26.5 20.1 124 690-815 57-182 (318)
443 KOG2062 26S proteasome regulat 34.7 8.6E+02 0.019 29.0 42.4 262 581-850 367-641 (929)
444 PF04910 Tcf25: Transcriptiona 34.6 6.4E+02 0.014 27.5 18.8 53 858-910 113-166 (360)
445 KOG0686 COP9 signalosome, subu 33.8 6.7E+02 0.015 27.5 15.8 61 713-773 152-215 (466)
446 COG4941 Predicted RNA polymera 33.7 4.9E+02 0.011 27.6 10.7 116 862-981 270-393 (415)
447 PF14689 SPOB_a: Sensor_kinase 33.7 1E+02 0.0022 23.4 4.7 24 645-668 27-50 (62)
448 KOG1839 Uncharacterized protei 33.7 2.1E+02 0.0045 36.2 9.5 51 790-840 942-998 (1236)
449 PF04762 IKI3: IKI3 family; I 33.6 9.3E+02 0.02 30.4 15.5 28 782-809 814-843 (928)
450 TIGR02710 CRISPR-associated pr 33.5 6.7E+02 0.015 27.5 12.4 55 751-805 136-196 (380)
451 PF11817 Foie-gras_1: Foie gra 33.2 1.8E+02 0.0038 29.8 8.0 58 886-943 181-243 (247)
452 PF11846 DUF3366: Domain of un 32.8 90 0.0019 30.5 5.6 33 201-233 141-173 (193)
453 KOG0292 Vesicle coat complex C 32.5 1.4E+02 0.0029 35.8 7.3 75 820-910 625-699 (1202)
454 PF14689 SPOB_a: Sensor_kinase 32.4 95 0.002 23.6 4.4 31 166-196 20-50 (62)
455 PF11848 DUF3368: Domain of un 32.3 1.5E+02 0.0033 21.1 5.1 33 337-369 13-45 (48)
456 PF09670 Cas_Cas02710: CRISPR- 32.2 4.7E+02 0.01 28.8 11.5 51 617-668 142-196 (379)
457 PRK12798 chemotaxis protein; R 32.1 7.3E+02 0.016 27.4 21.8 89 883-983 257-348 (421)
458 PRK09857 putative transposase; 31.7 2.2E+02 0.0048 30.0 8.4 77 921-999 209-285 (292)
459 COG5187 RPN7 26S proteasome re 30.7 6.2E+02 0.014 26.2 13.8 64 713-776 117-186 (412)
460 PF04090 RNA_pol_I_TF: RNA pol 29.8 4.3E+02 0.0092 25.9 9.2 108 883-991 41-177 (199)
461 PHA02537 M terminase endonucle 29.6 5.6E+02 0.012 25.8 10.3 21 756-776 94-114 (230)
462 PF11663 Toxin_YhaV: Toxin wit 29.3 56 0.0012 29.2 2.9 31 338-370 107-137 (140)
463 KOG2908 26S proteasome regulat 29.1 5.5E+02 0.012 27.3 10.2 84 716-799 80-176 (380)
464 PRK10564 maltose regulon perip 28.7 1.3E+02 0.0028 31.4 5.8 43 322-364 253-295 (303)
465 PF08311 Mad3_BUB1_I: Mad3/BUB 28.6 4.3E+02 0.0093 23.6 9.3 42 729-770 81-124 (126)
466 KOG0686 COP9 signalosome, subu 27.4 8.5E+02 0.019 26.7 14.9 64 501-564 151-215 (466)
467 PF15297 CKAP2_C: Cytoskeleton 27.3 2.6E+02 0.0057 29.8 7.8 66 898-965 118-187 (353)
468 KOG0128 RNA-binding protein SA 26.8 1.2E+03 0.026 28.2 37.9 99 323-424 110-218 (881)
469 COG2178 Predicted RNA-binding 26.2 6.1E+02 0.013 24.6 10.4 18 723-740 133-150 (204)
470 KOG2300 Uncharacterized conser 26.1 9.8E+02 0.021 27.0 41.0 84 723-806 335-430 (629)
471 cd08819 CARD_MDA5_2 Caspase ac 25.6 3.9E+02 0.0084 22.1 7.6 36 689-729 49-84 (88)
472 KOG0551 Hsp90 co-chaperone CNS 25.4 4.7E+02 0.01 27.7 9.0 54 858-911 91-147 (390)
473 COG4976 Predicted methyltransf 25.3 1.4E+02 0.0029 29.7 5.0 53 722-774 6-58 (287)
474 PRK09857 putative transposase; 24.8 5.4E+02 0.012 27.1 9.9 61 716-776 211-271 (292)
475 COG0735 Fur Fe2+/Zn2+ uptake r 24.7 2.6E+02 0.0057 25.8 6.7 42 437-478 26-67 (145)
476 COG0735 Fur Fe2+/Zn2+ uptake r 24.2 3.7E+02 0.0079 24.8 7.6 29 683-711 27-55 (145)
477 PF02184 HAT: HAT (Half-A-TPR) 23.7 1.6E+02 0.0034 19.0 3.4 25 898-924 2-26 (32)
478 KOG2659 LisH motif-containing 23.5 7.5E+02 0.016 24.7 9.7 58 786-843 70-131 (228)
479 KOG0292 Vesicle coat complex C 23.3 1.4E+03 0.031 27.9 24.2 112 325-460 671-782 (1202)
480 PF04762 IKI3: IKI3 family; I 22.9 1E+03 0.022 30.1 13.2 111 573-701 814-926 (928)
481 KOG4814 Uncharacterized conser 22.8 5.8E+02 0.012 29.7 9.7 86 653-740 366-457 (872)
482 PF10255 Paf67: RNA polymerase 22.5 1.1E+03 0.023 26.2 15.0 56 471-526 127-190 (404)
483 PRK05414 urocanate hydratase; 22.3 3.8E+02 0.0081 30.2 8.1 68 339-419 216-288 (556)
484 COG2912 Uncharacterized conser 21.9 4.5E+02 0.0097 27.1 8.1 64 717-782 187-250 (269)
485 PF15297 CKAP2_C: Cytoskeleton 21.7 7.8E+02 0.017 26.4 10.0 64 728-791 120-186 (353)
486 KOG1839 Uncharacterized protei 21.6 7.8E+02 0.017 31.5 11.4 123 721-843 942-1085(1236)
487 KOG4814 Uncharacterized conser 21.6 6.4E+02 0.014 29.3 9.8 96 678-774 357-457 (872)
488 PF11817 Foie-gras_1: Foie gra 21.3 3.2E+02 0.007 27.9 7.4 23 504-526 182-204 (247)
489 PRK14956 DNA polymerase III su 21.1 7.7E+02 0.017 28.1 10.6 37 205-241 249-285 (484)
490 PF11663 Toxin_YhaV: Toxin wit 20.6 70 0.0015 28.6 1.9 34 891-926 103-136 (140)
491 cd00280 TRFH Telomeric Repeat 20.3 7.6E+02 0.016 23.8 8.5 22 718-739 118-139 (200)
492 KOG0128 RNA-binding protein SA 20.3 1.6E+03 0.035 27.3 34.0 67 532-599 109-178 (881)
493 COG2178 Predicted RNA-binding 20.2 8.1E+02 0.018 23.9 10.7 62 329-390 32-98 (204)
494 KOG4521 Nuclear pore complex, 20.2 1.8E+03 0.039 28.1 13.6 25 887-911 1374-1398(1480)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.9e-80 Score=756.30 Aligned_cols=677 Identities=21% Similarity=0.282 Sum_probs=641.7
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 048751 166 VPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTV 245 (1004)
Q Consensus 166 ~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 245 (1004)
.++..++|.++.+|++.|++++|..+|++|.+.|++|+..+|..++..|.+.+.++.|..++..+.+.|..++...++++
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCc
Q 048751 246 VRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRL 325 (1004)
Q Consensus 246 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 325 (1004)
+.+|++.|+++.|.++|++|. +++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~--------------------------------------------------------~~d 151 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP--------------------------------------------------------ERD 151 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC--------------------------------------------------------CCC
Confidence 999999999999999998762 234
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSL 405 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 405 (1004)
..+||.||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.+++..+.+++..|.+.|+.||..+||+||.+
T Consensus 152 ~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~ 231 (857)
T PLN03077 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231 (857)
T ss_pred eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHH
Q 048751 406 YADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQA 485 (1004)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 485 (1004)
|++.|++++|.++|++|.+ ||.++|+++|.+|++.|++++|+++|.+|.+.|+.||..+|..++.+|++.|+.+.|
T Consensus 232 y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 9999999999999999964 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048751 486 KIIFKKCQLDG-GLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKN 564 (1004)
Q Consensus 486 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 564 (1004)
.+++..+...+ .++..+++.++.+|++.|++++|.++|++| ..||+.+||.+|.+|++.|++++|+++|++|.+
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m-----~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM-----ETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC-----CCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999997655 678899999999999999999999999997 467899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH
Q 048751 565 LGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVY 644 (1004)
Q Consensus 565 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 644 (1004)
.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.||.+|++.|++++|.++|++|. .+|..+|
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~ 458 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISW 458 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 4788999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
+.+|.+|++.|+.++|+++|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|++.
T Consensus 459 ~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~ 537 (857)
T PLN03077 459 TSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC 537 (857)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHc
Confidence 9999999999999999999999986 589999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
|++++|.++|+.+ .+|..+|++|+.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+
T Consensus 538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 538 GRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred CCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 9999999999987 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-HCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCc
Q 048751 805 EML-TQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDS 883 (1004)
Q Consensus 805 ~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~ 883 (1004)
+|. +.|+.|+..+|..++++|.+.|+.++|.++++++. ..||.
T Consensus 614 ~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~------------------------------------~~pd~ 657 (857)
T PLN03077 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP------------------------------------ITPDP 657 (857)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC------------------------------------CCCCH
Confidence 998 67999999999999999999999999988887652 24678
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHH
Q 048751 884 FIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNEN 954 (1004)
Q Consensus 884 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 954 (1004)
.+|++|+.+|...|+.+.|....+++.+ ++| +...|..|.+.|...|++++|.++.+.|...|+.+++.
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 8899999999888999888888888877 677 46678888888999999999999999998888887764
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.8e-76 Score=716.89 Aligned_cols=671 Identities=17% Similarity=0.224 Sum_probs=627.6
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048751 137 KEQTVVLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGK 216 (1004)
Q Consensus 137 ~~~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 216 (1004)
......+-+.++++.|+.+|+.+.. .|..|+..+|..++..+.+.+.++.+..++..+.+.+..++..++|+|+.+|++
T Consensus 55 n~~i~~l~~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~ 133 (857)
T PLN03077 55 NSQLRALCSHGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR 133 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh
Confidence 3334455567899999999999985 578999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhH
Q 048751 217 AGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLST 296 (1004)
Q Consensus 217 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1004)
.|+++.|.++|++|. .||.++|+++|.+|++.|++++|.++|++|...++
T Consensus 134 ~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~-------------------------- 183 (857)
T PLN03077 134 FGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV-------------------------- 183 (857)
T ss_pred CCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------------------------
Confidence 999999999999997 47999999999999999999999999998743221
Q ss_pred HHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC
Q 048751 297 ELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGN 376 (1004)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 376 (1004)
.+|..||+.++++|++.++++.+.+++..|.+.|+.||..+||.|+.+|++.|+
T Consensus 184 --------------------------~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 184 --------------------------RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred --------------------------CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 345889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 377 LSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIE 456 (1004)
Q Consensus 377 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (1004)
+++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.++++.|+.+.|.+++..
T Consensus 238 ~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 313 (857)
T PLN03077 238 VVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313 (857)
T ss_pred HHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Confidence 999999999997 4789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCH
Q 048751 457 MEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSV 536 (1004)
Q Consensus 457 m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 536 (1004)
|.+.|+.||..+++.++.+|++.|++++|.++|+++.. .+..+|+.++.+|++.|++++|..+|.+|.+ .|..||.
T Consensus 314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~Pd~ 389 (857)
T PLN03077 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQ-DNVSPDE 389 (857)
T ss_pred HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCCCc
Confidence 99999999999999999999999999999999999864 4667899999999999999999999999977 5899999
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048751 537 VEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAY 616 (1004)
Q Consensus 537 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 616 (1004)
.+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~ 465 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGL 465 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999974 6889999999999
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 617 ARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAK 696 (1004)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 696 (1004)
++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.+.|+.++..+++.|+++|++.|++++|.
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 999999999999999986 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HC
Q 048751 697 QVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKG-QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK-LS 774 (1004)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 774 (1004)
++|+.+ .+|..+||+++.+|++.|+.++|.++|++|.+.+ .||..+|+.++.+|.+.|++++|.++|++|. +.
T Consensus 545 ~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 545 NQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 999987 5799999999999999999999999999999988 7899999999999999999999999999999 67
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHH
Q 048751 775 GLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAII 854 (1004)
Q Consensus 775 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 854 (1004)
|+.|+..+|+.++.+|++.|++++|.+++++| .+.||..+|..++.+|...|+.+.+....+
T Consensus 620 gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~--------------- 681 (857)
T PLN03077 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQ--------------- 681 (857)
T ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHH---------------
Confidence 99999999999999999999999999999998 478999999999999988887766654433
Q ss_pred HHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 048751 855 TSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIV 919 (1004)
Q Consensus 855 ~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 919 (1004)
++++.. |.+...|..|.+.|+..|+|++|.++.+.|.+.|+++++-
T Consensus 682 ------------------~l~~l~-p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 682 ------------------HIFELD-PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred ------------------HHHhhC-CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 334443 4578889999999999999999999999999999998753
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.5e-66 Score=612.02 Aligned_cols=471 Identities=19% Similarity=0.271 Sum_probs=235.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSL 405 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 405 (1004)
..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCCCCcHHHHHHHHHhcCCHH
Q 048751 406 YADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEK--CGLHIDEHSVPGVMKMYINEGLLH 483 (1004)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~~~~~~~~~l~~~~~~~g~~~ 483 (1004)
|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||..+|+.++.+|++.|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 444444444444444444444444444444444444444444444444444443 233333333333333333333333
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 048751 484 QAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMK 563 (1004)
Q Consensus 484 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 563 (1004)
+|.++|+.+.. .+..|+..+||.+|.+|++.|++++|.++|++|.
T Consensus 597 eA~elf~~M~e-----------------------------------~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 597 RAKEVYQMIHE-----------------------------------YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHHH-----------------------------------cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33333322221 2244455555556666666666666666666665
Q ss_pred HCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHH
Q 048751 564 NLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVV 643 (1004)
Q Consensus 564 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 643 (1004)
+.|+.||..||+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...|+.||..+
T Consensus 642 ~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt 721 (1060)
T PLN03218 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 55555665566666666666666666666666665555556666666666666666666666666666555555566666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048751 644 YGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE 723 (1004)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 723 (1004)
|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~ 801 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR 801 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 66666666666666666666666655555566666666666666666666666666666555555565555555544321
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048751 724 LGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELL 803 (1004)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 803 (1004)
++++|..+.+.+...+. +......+..++|+.+|++|++.|+.||..||+.++.+++..+..+.+..++
T Consensus 802 --~y~ka~~l~~~v~~f~~---------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~ 870 (1060)
T PLN03218 802 --RFEKACALGEPVVSFDS---------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLI 870 (1060)
T ss_pred --HHHHHhhhhhhhhhhhc---------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHH
Confidence 23333333222221110 0001111122345555555555555555555555554444444455554444
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhc
Q 048751 804 HEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQE 844 (1004)
Q Consensus 804 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 844 (1004)
+.|...+..|+..+|..+++++.+. .++|..+++++...
T Consensus 871 ~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 871 ENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred HHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 4444444444555555555544221 23455555555443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.4e-65 Score=603.11 Aligned_cols=548 Identities=18% Similarity=0.273 Sum_probs=464.5
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048751 321 RKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGV-AVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTY 399 (1004)
Q Consensus 321 ~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 399 (1004)
..+++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|.+++|..+|+.|.. ||..+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 3345567788889999999999999999999999885 56777888899999999999999999998874 899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhc
Q 048751 400 NILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINE 479 (1004)
Q Consensus 400 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 479 (1004)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------------------ 502 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------------------ 502 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------------------
Confidence 99999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 048751 480 GLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLF 559 (1004)
Q Consensus 480 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 559 (1004)
..||..+|+.||.+|++.|++++|+++|
T Consensus 503 ----------------------------------------------------v~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 503 ----------------------------------------------------VEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred ----------------------------------------------------CCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 5667888999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC
Q 048751 560 KVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQG--AGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGV 637 (1004)
Q Consensus 560 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 637 (1004)
++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999976 57889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048751 638 EPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTM 717 (1004)
Q Consensus 638 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 717 (1004)
.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.|
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048751 718 ISLYAELGMVTEAESMFNDIREKG-QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQL 796 (1004)
Q Consensus 718 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 796 (1004)
+.+|++.|++++|.++|++|.+.+ .+|..+|+.|+.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 999999999999999999998876 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHh
Q 048751 797 RQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIK 876 (1004)
Q Consensus 797 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~ 876 (1004)
++|.+++.+|.+.|+.||..+|..++..|.+ ..++|.+..+.. ..++
T Consensus 771 e~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v---------------------------~~f~---- 817 (1060)
T PLN03218 771 DVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPV---------------------------VSFD---- 817 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhh---------------------------hhhh----
Confidence 9999999999999999999999998865431 223332221111 0010
Q ss_pred hhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHH
Q 048751 877 AEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLF 956 (1004)
Q Consensus 877 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 956 (1004)
. +......+..++|+.+|++|++.|+.||..||..++.++++.+..+.+..+++.+...+..|+..+|
T Consensus 818 ~------------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y 885 (1060)
T PLN03218 818 S------------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNL 885 (1060)
T ss_pred c------------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhh
Confidence 0 0111112234567778888877788888778877777777777777777777777555666667777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCC
Q 048751 957 KAVIDAYRNANREDLADLACQEMRTAFESPEHD 989 (1004)
Q Consensus 957 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 989 (1004)
+++++++.+ ..++|..++++|...+-.|+..
T Consensus 886 ~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 886 STLVDGFGE--YDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHhhcc--ChHHHHHHHHHHHHcCCCCCcc
Confidence 777777632 1357788888877777666554
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-60 Score=567.35 Aligned_cols=515 Identities=19% Similarity=0.269 Sum_probs=467.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 048751 166 VPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNG-VLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNT 244 (1004)
Q Consensus 166 ~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 244 (1004)
..+...|+.+|.+|.+.|++++|..+|+.|...+ +.|+..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4456789999999999999999999999999864 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCC
Q 048751 245 VVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPR 324 (1004)
Q Consensus 245 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 324 (1004)
++++|++.|+++.|.++|++|.+ +
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~--------------------------------------------------------~ 187 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE--------------------------------------------------------R 187 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC--------------------------------------------------------C
Confidence 99999999999999999987521 2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 325 LTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLS 404 (1004)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 404 (1004)
+..+||.||.+|++.|++++|+++|++|.+.|+.||..||+.++.++++.|+.+.+.+++..+.+.|+.||..+||+||.
T Consensus 188 ~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~ 267 (697)
T PLN03081 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267 (697)
T ss_pred CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHH
Q 048751 405 LYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQ 484 (1004)
Q Consensus 405 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 484 (1004)
+|++.|++++|.++|++|.+ +|.++|+++|.+|++.|++++|.++|++|.+.|
T Consensus 268 ~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g----------------------- 320 (697)
T PLN03081 268 MYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG----------------------- 320 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----------------------
Confidence 99999999999999999964 799999999999999999999999999998876
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048751 485 AKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKN 564 (1004)
Q Consensus 485 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 564 (1004)
..||..+|+.++.+|++.|++++|.+++.+|.+
T Consensus 321 -----------------------------------------------~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 321 -----------------------------------------------VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred -----------------------------------------------CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 556677899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH
Q 048751 565 LGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVY 644 (1004)
Q Consensus 565 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 644 (1004)
.|+.||..+|+.|+.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++|+++|++|.+.|+.||..||
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999964 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRE-CGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE 723 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 723 (1004)
+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| +..|+..+|++|+.+|..
T Consensus 430 ~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 430 LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRI 506 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999975 699999999999999999999999999998765 678999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH---HHH--------
Q 048751 724 LGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMA---CFA-------- 791 (1004)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~---~~~-------- 791 (1004)
.|+++.|..+++++.+..|.+..+|..|+++|++.|++++|.+++++|.+.|+.+. ..+|..+.. .+.
T Consensus 507 ~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~ 586 (697)
T PLN03081 507 HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQ 586 (697)
T ss_pred cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCcc
Confidence 99999999999999988888899999999999999999999999999999997643 333322110 000
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChhh
Q 048751 792 TNGQLRQCGELLHEMLTQKLLPDNGT 817 (1004)
Q Consensus 792 ~~g~~~~A~~~~~~~~~~~~~p~~~~ 817 (1004)
...-++...++..+|.+.|..|+...
T Consensus 587 ~~~i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 587 SREIYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 01113445567778888899998543
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-58 Score=549.93 Aligned_cols=465 Identities=18% Similarity=0.280 Sum_probs=424.3
Q ss_pred HHHHhhhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 048751 141 VVLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLI 220 (1004)
Q Consensus 141 ~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 220 (1004)
..+...++++.|+++|+|+....++.|+..+|+.++.+|++.++++.+..++..|.+.|+.||..+|+.|+.+|++.|++
T Consensus 95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~ 174 (697)
T PLN03081 95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174 (697)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCH
Confidence 34556788999999999999877789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhHHHHh
Q 048751 221 KEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFR 300 (1004)
Q Consensus 221 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1004)
++|.++|++|. .||.++|++++.+|++.|++++|.++|++|.+.++
T Consensus 175 ~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~------------------------------ 220 (697)
T PLN03081 175 IDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS------------------------------ 220 (697)
T ss_pred HHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC------------------------------
Confidence 99999999996 48999999999999999999999999999753321
Q ss_pred cCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHH
Q 048751 301 TGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEA 380 (1004)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 380 (1004)
.++..+|+.++.++++.|+.+.+.+++..|.+.|+.||..+|++|+.+|++.|++++|
T Consensus 221 ----------------------~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 221 ----------------------DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred ----------------------CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 2347899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048751 381 EALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKC 460 (1004)
Q Consensus 381 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 460 (1004)
.++|++|. .+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.
T Consensus 279 ~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 279 RCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred HHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 99999996 46999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHH
Q 048751 461 GLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYN 540 (1004)
Q Consensus 461 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 540 (1004)
|+.+|..+++.++.+|++.|++++|.++|+++ ..+|+.+||
T Consensus 355 g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m---------------------------------------~~~d~~t~n 395 (697)
T PLN03081 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRM---------------------------------------PRKNLISWN 395 (697)
T ss_pred CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC---------------------------------------CCCCeeeHH
Confidence 99998888877777776666666666666554 557889999
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHc
Q 048751 541 VMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQG-AGFKPQCLTFSSVIAAYARL 619 (1004)
Q Consensus 541 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~ 619 (1004)
+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999976 58999999999999999999
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048751 620 GQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVY 699 (1004)
Q Consensus 620 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 699 (1004)
|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+.++ .+..+|..|++.|++.|++++|.+++
T Consensus 476 G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 476 GLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP-EKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred CCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-CCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 9999999998876 4689999999999999999999999999998876542 24678999999999999999999999
Q ss_pred HHHHhCCCC
Q 048751 700 EKMKEMEGG 708 (1004)
Q Consensus 700 ~~~~~~~~~ 708 (1004)
+.|.+.|+.
T Consensus 552 ~~m~~~g~~ 560 (697)
T PLN03081 552 ETLKRKGLS 560 (697)
T ss_pred HHHHHcCCc
Confidence 999988875
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-44 Score=454.84 Aligned_cols=795 Identities=12% Similarity=0.032 Sum_probs=608.1
Q ss_pred HHhhhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 048751 143 LKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKE 222 (1004)
Q Consensus 143 l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 222 (1004)
+...|+++.|+..|..... .........+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus 100 ~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~ 177 (899)
T TIGR02917 100 YLLQGKFQQVLDELPGKTL-LDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDE 177 (899)
T ss_pred HHHCCCHHHHHHhhccccc-CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHH
Confidence 3344555555555543221 1112233444555555555555555555555555433 2233445555555555555555
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhh--HHHhHHHHh
Q 048751 223 ALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFK--HFLSTELFR 300 (1004)
Q Consensus 223 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 300 (1004)
|..+++++.+.. .++...+..+...+...|++++|...|++..... |.... ..+...++.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-----------------p~~~~~~~~~~~~~~~ 239 (899)
T TIGR02917 178 ARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-----------------PNNPAVLLALATILIE 239 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----------------CCCHHHHHHHHHHHHH
Confidence 555555554431 2233445555555555555555555555432211 00000 000111111
Q ss_pred cCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHH
Q 048751 301 TGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEA 380 (1004)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 380 (1004)
.|........+. .. ....|.+...+......+...|++++|...|+++.+.+.. +...+..+...+...|++++|
T Consensus 240 ~g~~~~A~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A 314 (899)
T TIGR02917 240 AGEFEEAEKHAD--AL--LKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQA 314 (899)
T ss_pred cCCHHHHHHHHH--HH--HHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHH
Confidence 111000000000 00 0012333445555566677889999999999999876422 233444556677889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048751 381 EALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKC 460 (1004)
Q Consensus 381 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 460 (1004)
...|+.+.+.. +.+...+..+...+.+.|++++|...++++.+.. ..+...+..+...+.+.|++++|.+.|+++.+.
T Consensus 315 ~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 392 (899)
T TIGR02917 315 YQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATEL 392 (899)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999998764 3356778888899999999999999999998764 245778888999999999999999999999876
Q ss_pred CCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHH
Q 048751 461 GLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYN 540 (1004)
Q Consensus 461 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 540 (1004)
... +...+..+...+...|++++|...++.+....+........++..+.+.|++++|..++..+... .+.+...|+
T Consensus 393 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 469 (899)
T TIGR02917 393 DPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK--QPDNASLHN 469 (899)
T ss_pred CCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCcHHHH
Confidence 432 45567788888999999999999999998888888888888999999999999999999988764 566778899
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048751 541 VMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLG 620 (1004)
Q Consensus 541 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 620 (1004)
.+...+...|++++|...|+++.+... .+...+..+...+...|++++|.++++.+.+.. +.+..++..+...+.+.|
T Consensus 470 ~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 547 (899)
T TIGR02917 470 LLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTG 547 (899)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcC
Confidence 999999999999999999999988653 356677888899999999999999999998764 557788899999999999
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 621 QLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYE 700 (1004)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 700 (1004)
+.++|..+++++...+ +.+...+..++..|...|++++|.++++.+.+.. +.+...|..+...+...|++++|...++
T Consensus 548 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 625 (899)
T TIGR02917 548 NEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFK 625 (899)
T ss_pred CHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998764 4567788889999999999999999999998764 3677889999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048751 701 KMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV 780 (1004)
Q Consensus 701 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 780 (1004)
.+.+... .+...+..++.++.+.|++++|...|+++.+..|.+..++..++..+...|++++|..+++.+.+.+. .+.
T Consensus 626 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 703 (899)
T TIGR02917 626 KLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAA 703 (899)
T ss_pred HHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCh
Confidence 9987654 36778889999999999999999999999999999999999999999999999999999999998763 567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchh-hhHHHHHHH
Q 048751 781 ISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYAS-EAIITSVYS 859 (1004)
Q Consensus 781 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~~~l~~ 859 (1004)
..+..+...+...|++++|...++++... .|+..++..+..++.+.|+.++|.+.+++.++..+.... ...++.++.
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYL 781 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 78888999999999999999999999865 455577788889999999999999999999988877654 455567788
Q ss_pred HHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHH
Q 048751 860 VVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEGVK 938 (1004)
Q Consensus 860 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~A~ 938 (1004)
..|+.++|++.++++++.. |.++.+++.++..+...|+ ++|+.+++++.+ ..| ++.++..+..++...|++++|.
T Consensus 782 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~ 857 (899)
T TIGR02917 782 AQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRAL 857 (899)
T ss_pred HCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999999987 4588999999999999999 889999999987 456 5677888999999999999999
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 939 RIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADLACQEMR 980 (1004)
Q Consensus 939 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 980 (1004)
++++++...+- .++.++..++.+|.+.|+.++|.+++++|.
T Consensus 858 ~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 858 PLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999975432 268899999999999999999999999885
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4e-43 Score=442.19 Aligned_cols=803 Identities=13% Similarity=0.057 Sum_probs=662.8
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 048751 139 QTVVLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAG 218 (1004)
Q Consensus 139 ~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 218 (1004)
...++...|+++.|...|+.+.... +++......+..++.+.|++++|...+.+......+.....+..+..+|...|
T Consensus 62 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (899)
T TIGR02917 62 LGKIYLALGDYAAAEKELRKALSLG--YPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLG 139 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcC
Confidence 3456667899999999999988643 34556677789999999999999999987754444556677899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhH--HHhH
Q 048751 219 LIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKH--FLST 296 (1004)
Q Consensus 219 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 296 (1004)
++++|...|+++.+... .+..++..+...+...|++++|..+++++.... |..... .+..
T Consensus 140 ~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~~~~~ 201 (899)
T TIGR02917 140 QLELAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTAD-----------------PGNVDALLLKGD 201 (899)
T ss_pred CHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCChHHHHHHHH
Confidence 99999999999987642 345578889999999999999999999874422 111111 1111
Q ss_pred HHHhcCCCCccccchh-hcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccC
Q 048751 297 ELFRTGGRNPISRNMG-LLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHG 375 (1004)
Q Consensus 297 ~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 375 (1004)
-.+..|.. ..+.. +... ....|.+..++..++..+...|++++|...++.+.+.... +...+......+...|
T Consensus 202 ~~~~~g~~---~~A~~~~~~a--~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 275 (899)
T TIGR02917 202 LLLSLGNI---ELALAAYRKA--IALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKK 275 (899)
T ss_pred HHHhcCCH---HHHHHHHHHH--HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhc
Confidence 11222211 11111 1111 1234777888999999999999999999999999886432 3333334445566789
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 376 NLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVII 455 (1004)
Q Consensus 376 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 455 (1004)
++++|...|+.+.+.+.. +...+..+...+...|++++|...|+++.+.. ..+...+..+...+.+.|++++|...++
T Consensus 276 ~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 353 (899)
T TIGR02917 276 NYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLS 353 (899)
T ss_pred CHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999876422 23455566777889999999999999998753 2346677888889999999999999999
Q ss_pred HHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCC
Q 048751 456 EMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKS 535 (1004)
Q Consensus 456 ~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 535 (1004)
++..... .+...+..+...+...|++++|.+.|+++....+.....+..++..+...|++++|...|..+.+. .+..
T Consensus 354 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~ 430 (899)
T TIGR02917 354 PALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQL--DPEL 430 (899)
T ss_pred HHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh--CCcc
Confidence 9987653 356678888999999999999999999999888889999999999999999999999999998774 3334
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048751 536 VVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAA 615 (1004)
Q Consensus 536 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 615 (1004)
...+..++..+.+.|++++|..+++++..... ++..++..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 431 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 508 (899)
T TIGR02917 431 GRADLLLILSYLRSGQFDKALAAAKKLEKKQP-DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARI 508 (899)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHH
Confidence 45667788899999999999999999987643 467889999999999999999999999998754 4566778889999
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048751 616 YARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGA 695 (1004)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 695 (1004)
+...|++++|.+.|+++...+ +.+..++..+...+.+.|+.++|..+++++...+. .+...+..++..+...|++++|
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998764 55788999999999999999999999999988753 5667888899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 696 KQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
..+++.+.+.. +.+...|..++.++.+.|++++|...|+++.+..|.++..+..++.++...|++++|+..++++.+..
T Consensus 587 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 587 LAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999998754 44788999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHH
Q 048751 776 LLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIIT 855 (1004)
Q Consensus 776 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 855 (1004)
. .+..++..++..+...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.++.++...+.......++
T Consensus 666 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 743 (899)
T TIGR02917 666 P-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLH 743 (899)
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHH
Confidence 2 347899999999999999999999999998764 45666778888899999999999999999999887765555667
Q ss_pred HHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh
Q 048751 856 SVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLV 934 (1004)
Q Consensus 856 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~ 934 (1004)
..+...|+.++|.+.++++++.. |.+..+++.++..|...|++++|.+.|+++++. .| +..++..+.+.+...|+
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-
Confidence 78899999999999999999986 558899999999999999999999999999984 45 68899999999999999
Q ss_pred hHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCC
Q 048751 935 EGVKRIHSQLKYGKMEPN-ENLFKAVIDAYRNANREDLADLACQEMRTAFES 985 (1004)
Q Consensus 935 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 985 (1004)
++|..+++++.. ..|+ +..+..++.+|...|++++|...++++....+.
T Consensus 820 ~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 820 PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 889999998864 3555 667889999999999999999999999976644
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.3e-27 Score=299.50 Aligned_cols=674 Identities=12% Similarity=0.057 Sum_probs=346.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 048751 172 YNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKE 251 (1004)
Q Consensus 172 ~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 251 (1004)
.-..++.+...++.+.|.+.+.++.... +.++.++..++..+.+.|+.++|.+.++++.+. .|+...+..+-..+..
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHh
Confidence 3445666677788888888888877654 446677777888888888888888888888776 3443332111100000
Q ss_pred cCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCchhHHHH
Q 048751 252 VGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNT 331 (1004)
Q Consensus 252 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 331 (1004)
.+++......
T Consensus 108 ----------------------------------------------------------------------~~~~~~~~l~ 117 (1157)
T PRK11447 108 ----------------------------------------------------------------------STPEGRQALQ 117 (1157)
T ss_pred ----------------------------------------------------------------------cCCchhhHHH
Confidence 0011122333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048751 332 LIDLYGKAGRLQDAANVFAEMLKSGVAVDTI-TFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVG 410 (1004)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 410 (1004)
+...+.+.|++++|++.|+.+.+.+. |+.. ............|+.++|++.|+++.+.. +-+...+..+...+...|
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 44455555666666666665554321 1211 11111111123455666666666655542 113444555555555556
Q ss_pred CHHHHHHHHHHHHHcC------------------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHH
Q 048751 411 NINAALRYYWKIREVG------------------LFPDS-VTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPG 471 (1004)
Q Consensus 411 ~~~~A~~~~~~m~~~g------------------~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 471 (1004)
+.++|+..++++.... ..++. ..+...+..+-.....+.|...+.++......|... ...
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~ 274 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARA 274 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHH
Confidence 6666666665554421 00100 011111111111112223333333332221111110 012
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCC
Q 048751 472 VMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKL 551 (1004)
Q Consensus 472 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 551 (1004)
....+...|++++|...|++++...|.+..++..++.+|.+.|++++|+..|++..+.....+....|..++..
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~------ 348 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV------ 348 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh------
Confidence 23334444555555555555444444444444444444444444444444444443321111111111111100
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 048751 552 YDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHE 631 (1004)
Q Consensus 552 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 631 (1004)
............+.+.|++++|...|+++++.. +.+...+..+...+...|++++|++.|++
T Consensus 349 -----------------~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 349 -----------------NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred -----------------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 000001112334455666666666666666542 33444555566666666666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 632 MRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLW--------ANQIVLTSLIKAYSKIGCLEGAKQVYEKMK 703 (1004)
Q Consensus 632 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 703 (1004)
+.+.. +.+...+..+...|. .++.++|+.+++.+...... .....+..+...+...|++++|++.+++..
T Consensus 411 aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al 488 (1157)
T PRK11447 411 ALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL 488 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66542 223444555555543 34556666655543221000 001122233344444455555555555544
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048751 704 EMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISY 783 (1004)
Q Consensus 704 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 783 (1004)
+..+. +...+..+...|.+.|++++|...++++.+..|.++..+..++..+...|+.++|+..++++......++...+
T Consensus 489 ~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l 567 (1157)
T PRK11447 489 ALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQEL 567 (1157)
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHH
Confidence 43322 33344444444555555555555555554444444444444444444445555555444443221111110000
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCch-hhhHHHHHHHHHh
Q 048751 784 NQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYA-SEAIITSVYSVVG 862 (1004)
Q Consensus 784 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~~~~~~l~~~~~ 862 (1004)
.. ++ ....+......+...|+.++|++.++. .|..+ ....++.++...|
T Consensus 568 ~~-------------------~l-------~~~~~l~~a~~l~~~G~~~eA~~~l~~----~p~~~~~~~~La~~~~~~g 617 (1157)
T PRK11447 568 AQ-------------------RL-------QSDQVLETANRLRDSGKEAEAEALLRQ----QPPSTRIDLTLADWAQQRG 617 (1157)
T ss_pred HH-------------------HH-------hhhHHHHHHHHHHHCCCHHHHHHHHHh----CCCCchHHHHHHHHHHHcC
Confidence 00 00 001122344556677777777777662 22222 2445566778888
Q ss_pred hhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHH
Q 048751 863 LNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEGVKRIH 941 (1004)
Q Consensus 863 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~ 941 (1004)
++++|++.|+++++.. |.+..++..++.+|...|++++|++.++++.+ ..| +..++..+..++...|++++|.+++
T Consensus 618 ~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 618 DYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTF 694 (1157)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence 8888888888888876 45788999999999999999999999998876 456 4567777888888999999999999
Q ss_pred HHHHcCC-CCC----cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048751 942 SQLKYGK-MEP----NENLFKAVIDAYRNANREDLADLACQEMRT 981 (1004)
Q Consensus 942 ~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 981 (1004)
+.+.... -.| ++.++..++.++...|++++|...+++...
T Consensus 695 ~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 695 NRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9886432 112 234677788999999999999999988763
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.7e-27 Score=298.47 Aligned_cols=628 Identities=13% Similarity=0.069 Sum_probs=456.7
Q ss_pred hhhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH----------------H
Q 048751 145 EQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTY----------------G 208 (1004)
Q Consensus 145 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~----------------~ 208 (1004)
..++.+.|.+.++.+.... +-++.++..++..+.+.|+.++|...+++..+.. |.+.... .
T Consensus 40 ~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l 116 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQAL 116 (1157)
T ss_pred hhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHH
Confidence 4677888888888777432 3367788889999999999999999999998866 3333322 3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCc
Q 048751 209 MLVDVYGKAGLIKEALLWIKHMKLRGIFPDEV-TMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMP 287 (1004)
Q Consensus 209 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1004)
.+.+.+.+.|++++|+..|+++.+.+ .|+.. ....+.......|+.++|.+.|+++.+
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~-------------------- 175 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNA-------------------- 175 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHH--------------------
Confidence 34557889999999999999998763 22322 111112222345899999999987532
Q ss_pred chhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC--H----
Q 048751 288 VSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVD--T---- 361 (1004)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~---- 361 (1004)
..|.+...+..+...+...|+.++|+..|+++.+...... .
T Consensus 176 ---------------------------------~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~ 222 (1157)
T PRK11447 176 ---------------------------------DYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWY 222 (1157)
T ss_pred ---------------------------------hCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHH
Confidence 1366778899999999999999999999999876421100 0
Q ss_pred -------------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048751 362 -------------ITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLF 428 (1004)
Q Consensus 362 -------------~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 428 (1004)
..+...+..+-.......|...+..+......|+... ......+...|++++|+..|++..+...
T Consensus 223 ~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P- 300 (1157)
T PRK11447 223 GQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANP- 300 (1157)
T ss_pred HHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 0111112222222334556666666554433344322 2345677889999999999999998532
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC-Cc------------HHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 048751 429 PDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDE-HS------------VPGVMKMYINEGLLHQAKIIFKKCQLD 495 (1004)
Q Consensus 429 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~~ 495 (1004)
.+...+..+...+.+.|++++|+..|++..+....... .. .......+.+.|++++|...|++++..
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 25778889999999999999999999999876543221 11 122345678899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC-------
Q 048751 496 GGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTW------- 568 (1004)
Q Consensus 496 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~------- 568 (1004)
.|.+..++..++.++...|++++|++.|+++.+. .+.+...+..+...|. .++.++|..+++.+......
T Consensus 381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~ 457 (1157)
T PRK11447 381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIER 457 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999998874 4455666777777774 46789999888765432100
Q ss_pred -CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048751 569 -PDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSL 647 (1004)
Q Consensus 569 -p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 647 (1004)
.....+..+...+...|++++|.+.|++.++.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~ 535 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAY 535 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 012234556677888999999999999998764 4456677888889999999999999999988653 3345555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048751 648 INGFAATGKVEEALQYFRMMRECGLWANQI---------VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMI 718 (1004)
Q Consensus 648 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (1004)
...+...++.++|+..++.+......++.. .+..+...+...|+.++|..+++. .+.+...+..+.
T Consensus 536 al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La 610 (1157)
T PRK11447 536 GLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLA 610 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHH
Confidence 666778899999999988765432222211 223456677888999999988872 234556677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHH
Q 048751 719 SLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLR 797 (1004)
Q Consensus 719 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 797 (1004)
..+.+.|++++|+..|+++.+..|.++.++..++.+|...|++++|++.++.+.+.. |+ ..++..+..++...|+++
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA--NDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHhCCCHH
Confidence 889999999999999999999989999999999999999999999999999887643 44 566777888888999999
Q ss_pred HHHHHHHHHHHCCC--CC---ChhhHHHHHHHHHcCCCcHHHHHHHHhHhh
Q 048751 798 QCGELLHEMLTQKL--LP---DNGTFKVLFTILKKGGFPIEAVKQLQSSYQ 843 (1004)
Q Consensus 798 ~A~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 843 (1004)
+|.+++++++.... .| +...+..+...+...|++++|+..+++++.
T Consensus 689 eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 689 AAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999876422 12 123455567777888888888888887764
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=7.5e-24 Score=252.03 Aligned_cols=679 Identities=10% Similarity=-0.014 Sum_probs=393.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHH
Q 048751 183 QKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFY 262 (1004)
Q Consensus 183 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 262 (1004)
|++++|...|+...+.. |-+..++..|...|...|++++|+..+++..+. .|+...|..++..+ +++++|..+|
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHH
Confidence 67777777777776655 334556677777777777777777777777665 44444444333222 6777777777
Q ss_pred HHhcccccccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHH-------
Q 048751 263 KDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDL------- 335 (1004)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~------- 335 (1004)
+++.. ..|.+..++..+...
T Consensus 132 e~l~~-----------------------------------------------------~~P~n~~~~~~la~~~~~~~~l 158 (987)
T PRK09782 132 EELLA-----------------------------------------------------QQKACDAVPTLRCRSEVGQNAL 158 (987)
T ss_pred HHHHH-----------------------------------------------------hCCCChhHHHHHHHHhhccchh
Confidence 66521 124445555555554
Q ss_pred -HHhcCChHHHHHHHHHHHHCCCCcCHHHHHHH-HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCH
Q 048751 336 -YGKAGRLQDAANVFAEMLKSGVAVDTITFNTM-IYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYAD-VGNI 412 (1004)
Q Consensus 336 -~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~-~g~~ 412 (1004)
|.+. ++|.+.++ .......|+..+.... ...|.+.|++++|++++.++.+.+.. +..-...|..+|.. .++
T Consensus 159 ~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~- 232 (987)
T PRK09782 159 RLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD- 232 (987)
T ss_pred hhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-
Confidence 5444 44444444 3333334444444444 67777788888888888888776533 34445566666666 355
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCCCcHHHHHHHHHhcCCHH-HHHHHHH
Q 048751 413 NAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLH-IDEHSVPGVMKMYINEGLLH-QAKIIFK 490 (1004)
Q Consensus 413 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~~~-~A~~~~~ 490 (1004)
+++..+++. .++-+...+..+...+.+.|+.++|.++++++...-.. |+..++. ..+.+.+... .|..-|.
T Consensus 233 ~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~---~~l~r~~~~~~~~~~~~~ 305 (987)
T PRK09782 233 DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL---YLLSKYSANPVQALANYT 305 (987)
T ss_pred HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH---HHHHhccCchhhhccchh
Confidence 666666543 23356777777788888888888888888776654332 3333322 2233333322 1111111
Q ss_pred HhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 048751 491 KCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPD 570 (1004)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 570 (1004)
+ ...+.-......++..+.+.+.++.++++.. ..|.....-.-..+....+...++...+..|.+.... +
T Consensus 306 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~ 375 (987)
T PRK09782 306 V--QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPA-N 375 (987)
T ss_pred h--hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCC-C
Confidence 1 1111122344455788888888887776632 2222222111111222346667777777777665321 4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048751 571 ECTYNSLVQMFAGGDLMGQAVDLLAEMQGA--GFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLI 648 (1004)
Q Consensus 571 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 648 (1004)
.....-+.-...+.|+.++|..+|...... +-..+....+.++..|.+.+.+....++..-.. +++...-..+
T Consensus 376 ~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~- 450 (987)
T PRK09782 376 LTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK----PLPLAEQRQW- 450 (987)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc----ccccchhHHH-
Confidence 444444444456778888888888887762 122344555677888888777443333322211 1111111111
Q ss_pred HHHHhcCCHH---HHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048751 649 NGFAATGKVE---EALQYFRMMRECGLWA--NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE 723 (1004)
Q Consensus 649 ~~~~~~g~~~---~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 723 (1004)
.|+.. .+...+....... ++ +...|..+..++.. ++.++|...+.+..... |+......+...+.+
T Consensus 451 -----~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~ 521 (987)
T PRK09782 451 -----QSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQ 521 (987)
T ss_pred -----HhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHH
Confidence 22222 2333333333321 23 55566666666655 67777777666665543 343333334444557
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 048751 724 LGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGEL 802 (1004)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 802 (1004)
.|++++|...|+++... +++...+..++.++.+.|++++|...+++.++.+ |+ ...+..+...+...|++++|...
T Consensus 522 ~Gr~eeAi~~~rka~~~-~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 522 VEDYATALAAWQKISLH-DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred CCCHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77788887777776554 3333445666777777778887887777777654 33 33333344444555788888877
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchh-hhHHHHHHHHHhhhHhhhhHHHHHHhhhccC
Q 048751 803 LHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYAS-EAIITSVYSVVGLNALALGTCETLIKAEAYL 881 (1004)
Q Consensus 803 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~ 881 (1004)
+++.++. .|+...+..+..++.+.|+.++|+..+++++...|.... ...++..+...|++++|++.++++++.. |.
T Consensus 599 ~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~ 675 (987)
T PRK09782 599 LTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PD 675 (987)
T ss_pred HHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 7777643 455666777777777777777777777777777666554 3445556667777777777777777775 34
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHHHHHH
Q 048751 882 DSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDI-VTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVI 960 (1004)
Q Consensus 882 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 960 (1004)
++.++..++.++...|++++|+..|++.++ +.|+. .+.....+...+..+++.|.+-+++.- .+.|+..+.-...
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~--~~~~~~~a~~~~g 751 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW--TFSFDSSIGLRSG 751 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh--hcCccchhccccc
Confidence 677788888888888888888888888876 56753 455556666666667777777666554 2344433333333
Q ss_pred HHHHhcC
Q 048751 961 DAYRNAN 967 (1004)
Q Consensus 961 ~~~~~~g 967 (1004)
+++...+
T Consensus 752 ~~~~~~~ 758 (987)
T PRK09782 752 AMSTANN 758 (987)
T ss_pred hHhhhcc
Confidence 4444333
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=9.5e-24 Score=251.18 Aligned_cols=659 Identities=13% Similarity=0.030 Sum_probs=388.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHh
Q 048751 217 AGLIKEALLWIKHMKLRGIFPD-EVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLS 295 (1004)
Q Consensus 217 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1004)
.|++++|+..|++..+. .|+ ..++..|..+|...|+.++|+..+++..+
T Consensus 57 ~Gd~~~A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~---------------------------- 106 (987)
T PRK09782 57 NNDEATAIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLK---------------------------- 106 (987)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----------------------------
Confidence 37777777777777666 333 44666666677777777777776665311
Q ss_pred HHHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH-----
Q 048751 296 TELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYT----- 370 (1004)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~----- 370 (1004)
..|.|...+..+... +++++|..+++++.+.... +..++..+...
T Consensus 107 -------------------------ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~ 156 (987)
T PRK09782 107 -------------------------RHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQN 156 (987)
T ss_pred -------------------------cCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccc
Confidence 124444444444221 6666777777777665321 23333333333
Q ss_pred ---HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cC
Q 048751 371 ---CGSHGNLSEAEALFCMMEESRISPDTKTYNIL-LSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQ-RN 445 (1004)
Q Consensus 371 ---~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g 445 (1004)
|.+. ++|.+.++ .......|+..+.... ...|.+.|++++|+.++.++.+.+.. +..-...|-.+|.+ .+
T Consensus 157 ~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~ 231 (987)
T PRK09782 157 ALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQL 231 (987)
T ss_pred hhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhC
Confidence 3333 44444444 2222223333333333 66677777777777777777765432 23334445555555 24
Q ss_pred CHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC--CHHHHHHHHHHHHhcCCHH-HHHHH
Q 048751 446 MVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGL--SSKTLAAIIDVYAEKGLWA-EAETV 522 (1004)
Q Consensus 446 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~-~A~~~ 522 (1004)
+ +++..+++. ...-+......++..+.+.|+.++|.++++++....+. ....+..+ +.+.+... .|..-
T Consensus 232 ~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~ 303 (987)
T PRK09782 232 D-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALAN 303 (987)
T ss_pred H-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH---HHhccCchhhhccc
Confidence 4 555555332 22235555566666666666666666666665433211 11222221 22222211 11111
Q ss_pred HhhhhhhcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 048751 523 FYGKRDLVGQKKS-VVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAG 601 (1004)
Q Consensus 523 ~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 601 (1004)
|.. . ..++ ....-.++..+.+.++++.+.++.. +.|.......-..+....+...++...+..|.+..
T Consensus 304 ~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~ 372 (987)
T PRK09782 304 YTV--Q---FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQE 372 (987)
T ss_pred hhh--h---hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC
Confidence 110 0 0000 0011222445556666664444311 22222221111111123355555555555555431
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048751 602 FKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRA--GVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVL 679 (1004)
Q Consensus 602 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 679 (1004)
+-+....--+.-...+.|+.++|..+|+..... +..++....+.++..|.+.+......++..... +++...-
T Consensus 373 -~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~----~~~~~~~ 447 (987)
T PRK09782 373 -PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK----PLPLAEQ 447 (987)
T ss_pred -CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc----ccccchh
Confidence 223344434444455666666677666666541 112233344456666666655322222211111 1111111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC-C-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 048751 680 TSLIKAYSKIGCLEGAKQVYEKMKEME-G-GP--DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLY 755 (1004)
Q Consensus 680 ~~li~~~~~~g~~~~A~~~~~~~~~~~-~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (1004)
+.-.|+..++...++.....- . ++ +...|..+..++.. ++.++|...+.+.....|.+. ....++..+
T Consensus 448 ------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al 519 (987)
T PRK09782 448 ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQA 519 (987)
T ss_pred ------HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHH
Confidence 111233333333333322211 1 23 56778888888877 899999999988888776543 345556666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHH
Q 048751 756 KTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAV 835 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 835 (1004)
...|++++|+..++++... .|+...+..+..++.+.|++++|..++++.++.. +++...+..+...+...|++++|+
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 7999999999999998664 3555567777888899999999999999998653 222333334444555679999999
Q ss_pred HHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 048751 836 KQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLE 915 (1004)
Q Consensus 836 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 915 (1004)
..++++++..|.......++.++...|++++|++.++++++.. |.+..+++.++.++...|+.++|++.|++.++ ..
T Consensus 597 ~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~ 673 (987)
T PRK09782 597 NDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK--GL 673 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC
Confidence 9999999888753334556777899999999999999999997 45888999999999999999999999999998 57
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 916 P-DIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPN-ENLFKAVIDAYRNANREDLADLACQEMR 980 (1004)
Q Consensus 916 p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 980 (1004)
| +...+..+..++...|++++|...++++. .+.|+ +.+....+.++.+..+++.|.+.+++.-
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al--~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVI--DDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 8 57789999999999999999999999887 45787 5678888899999999999988666544
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.6e-23 Score=218.31 Aligned_cols=453 Identities=16% Similarity=0.152 Sum_probs=312.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 503 LAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFA 582 (1004)
Q Consensus 503 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 582 (1004)
...|+.-..+.|++.+|++.-..+-.. .+.+....-.+-..+.+..++++...--....+... --..+|..+...+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHH
Confidence 455566666667777776655443321 122222222233345555555555444333333221 13456777777777
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHH
Q 048751 583 GGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVY-GSLINGFAATGKVEEAL 661 (1004)
Q Consensus 583 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~ 661 (1004)
..|++.+|+.+++.+++.. +.....|..+..++...|+.+.|...|.+..+. .|+.... +.+.+.+-..|++.+|.
T Consensus 128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 7777777777777777643 334566777777777777777777777777663 4554333 33444444567777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048751 662 QYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKG 741 (1004)
Q Consensus 662 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (1004)
..+.+.++... -=.+.|+.|...+-.+|+...|+..|++..+.++. -...|-.|...|...+.+++|...|.+.....
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 77777766432 22356777777777777777787777777765432 23466677777777778888888888777777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 048751 742 QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKV 820 (1004)
Q Consensus 742 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 820 (1004)
|....++..|+..|..+|.+|-|+..+++.++ +.|+ ...|+.|..++-..|++.+|.+.|++.+.. .+........
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~N 359 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNN 359 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHH
Confidence 77777788888888888888888888888777 3466 567778888887778888888888777653 2333456677
Q ss_pred HHHHHHcCCCcHHHHHHHHhHhhccCCchh-hhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCCh
Q 048751 821 LFTILKKGGFPIEAVKQLQSSYQEVKPYAS-EAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKN 899 (1004)
Q Consensus 821 l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 899 (1004)
+...+...|..++|..++..+++-.|.... ...++.+|-.+|++++|+..|++++... |.-.-+|+.++..|...|+.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcchHHHHhhhH
Confidence 777777788888888888887777776655 4566777888888888888888888775 23456788999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhH
Q 048751 900 DKALNTFMKMLDQGLEPD-IVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPN-ENLFKAVIDAYRNANREDL 971 (1004)
Q Consensus 900 ~~A~~~~~~m~~~g~~pd-~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 971 (1004)
+.|++.|.+++. +.|. ...+.+|..++..+|+..+|+.-++... .++|| +..|..++.++---.+|.+
T Consensus 439 ~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 439 SAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCCchhhhHHHHHHHHHhcccc
Confidence 999999998887 6775 5688889999999999999999888876 56888 5678877777655555554
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-23 Score=219.23 Aligned_cols=451 Identities=16% Similarity=0.167 Sum_probs=328.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhc
Q 048751 434 QRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEK 513 (1004)
Q Consensus 434 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 513 (1004)
...|..-..+.|++++|++--...-... ..+...+..+...+.+..+++...+.-...++..+.-.+++..+++.+...
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 5566677778889888887655443332 224445555666777777888777777777777788888888888888888
Q ss_pred CCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHcCCChHHHHH
Q 048751 514 GLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTY-NSLVQMFAGGDLMGQAVD 592 (1004)
Q Consensus 514 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~ 592 (1004)
|++++|...++.+.+. .+..+..|..+..++...|+.+.|.+.|.+.++. .|+.... ..+...+...|++.+|..
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 8888888888888774 5556778888888888888888888888888774 3554433 333444445688888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 593 LLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN-EVVYGSLINGFAATGKVEEALQYFRMMRECG 671 (1004)
Q Consensus 593 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 671 (1004)
.|.+.++.. +-=...|+.|...+...|+...|+..|++..+. .|+ ...|-.|.+.|-..+.++.|+..+.+.....
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 887777642 222456778888888888888888888887764 465 6778888888888888888888887777643
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 048751 672 LWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAM 751 (1004)
Q Consensus 672 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 751 (1004)
. -....+..+...|-.+|.++.|+..+++.++..+. =...|+.|..++-..|++.+|...|.+.....|....+.+.|
T Consensus 283 p-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 283 P-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred C-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 2 24556777777777888888888888888775432 345778888888888888888888888888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHcCC
Q 048751 752 MYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNG-TFKVLFTILKKGG 829 (1004)
Q Consensus 752 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g 829 (1004)
+.+|...|++++|..+|....+ +.|. ....+.|...|-++|++++|+..|++.++ +.|+.. .+..+..
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGn------ 430 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGN------ 430 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcch------
Confidence 8888888888888888888877 4466 55677788888888888888888887763 455422 2333333
Q ss_pred CcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 048751 830 FPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKM 909 (1004)
Q Consensus 830 ~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 909 (1004)
.|...|+.+.|++.+.+++...+ --..+.+.|+..|..+|+..+|++-|++.
T Consensus 431 ---------------------------t~ke~g~v~~A~q~y~rAI~~nP-t~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 431 ---------------------------TYKEMGDVSAAIQCYTRAIQINP-TFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred ---------------------------HHHHhhhHHHHHHHHHHHHhcCc-HHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 34455566666666666666542 23457899999999999999999999999
Q ss_pred HHCCCCCC-HHHHHHHHHHHHhcCCh
Q 048751 910 LDQGLEPD-IVTCINLVGCYGKAGLV 934 (1004)
Q Consensus 910 ~~~g~~pd-~~t~~~l~~~~~~~g~~ 934 (1004)
++ ++|| +..+.+++.++.-..++
T Consensus 483 Lk--lkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 483 LK--LKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred Hc--cCCCCchhhhHHHHHHHHHhcc
Confidence 97 7897 56788887776544333
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.2e-20 Score=204.95 Aligned_cols=648 Identities=13% Similarity=0.074 Sum_probs=456.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CcCHH---HHHHHHHHHHcc-----------CCHHHHHHHHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLKSGV----AVDTI---TFNTMIYTCGSH-----------GNLSEAEALFCMM 387 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~---t~~~ll~~~~~~-----------g~~~~A~~l~~~m 387 (1004)
..+|..+...|++.|..++.+.+++.-....- .++.. .++.+...+... .-+..|.-+|+..
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 46799999999999999999999987662110 11111 112222212111 1123344444443
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 048751 388 EESRISPDTKTYNILLSLYADVGN--INAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHID 465 (1004)
Q Consensus 388 ~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 465 (1004)
-+....-+. ++..-...|...|+ ++.|...|....+.. .+++...---.......|++..|+.+|..........-
T Consensus 121 ~ki~m~~~~-~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~ 198 (1018)
T KOG2002|consen 121 DKIDMYEDS-HLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK 198 (1018)
T ss_pred HHhhccCcc-hhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC
Confidence 322111111 11111122333444 589999999998853 23333333333344567899999999999776654444
Q ss_pred CCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC---HHHHHHHHhhhhhhcCCCCCHHHHHHH
Q 048751 466 EHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGL---WAEAETVFYGKRDLVGQKKSVVEYNVM 542 (1004)
Q Consensus 466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~l 542 (1004)
+.....+..++.+.|+.+.|+..|.+++.-+|.++.++..|+.+-....+ +..+...+...-.. .+.+++..+.|
T Consensus 199 aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~L 276 (1018)
T KOG2002|consen 199 ADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHL 276 (1018)
T ss_pred CCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHH
Confidence 44555667888899999999999999999999888888888777666554 45566666666554 55566778889
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHH
Q 048751 543 IKAYGKSKLYDKAFSLFKVMKNLGTW--PDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQC--LTFSSVIAAYAR 618 (1004)
Q Consensus 543 i~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~ 618 (1004)
...|.-.|++..+..+...+...... .-...|..+.++|...|++++|..+|.+..+.. ++. ..+..+...|.+
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHH
Confidence 99999999999999999988775421 123457789999999999999999998887643 443 445678899999
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 048751 619 LGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATG----KVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEG 694 (1004)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 694 (1004)
.|+++.+...|+...+.. +-+..+...|...|...+ ..+.|..++....+.- +.|...|..+...+-.. +...
T Consensus 355 ~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~ 431 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWA 431 (1018)
T ss_pred hchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHH
Confidence 999999999999998863 445778888888887765 5677888887777654 35677787777776554 4444
Q ss_pred HHHHHHHH----HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C------CCHHHHHHHHHHHHhcCC
Q 048751 695 AKQVYEKM----KEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKG----Q------VDAVSFAAMMYLYKTMGM 760 (1004)
Q Consensus 695 A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~------~~~~~~~~l~~~~~~~g~ 760 (1004)
++..+..+ ...+..+.+...|.+.......|++.+|...|......- . .+..+-..++.++-..++
T Consensus 432 sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~ 511 (1018)
T KOG2002|consen 432 SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHD 511 (1018)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhh
Confidence 46666544 345556888999999999999999999999999987761 1 233346678888889999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHH
Q 048751 761 LDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQ 839 (1004)
Q Consensus 761 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~ 839 (1004)
++.|.+.|..+.+.. |. +..|..++......+...+|...++..+.. ...++.....+...+.+...+..|.+-+.
T Consensus 512 ~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~ 588 (1018)
T KOG2002|consen 512 TEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFE 588 (1018)
T ss_pred hhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHH
Confidence 999999999999854 66 445555553334457888999999998653 23344445555556666666666766555
Q ss_pred hHhhccCCc---hhhhHHHHHH------------HHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHH
Q 048751 840 SSYQEVKPY---ASEAIITSVY------------SVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALN 904 (1004)
Q Consensus 840 ~~~~~~~~~---~~~~~~~~l~------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 904 (1004)
......... -+...++.++ ...+.+++|++.|.+++..+ |.|..+-|.++-.++..|++.+|.+
T Consensus 589 ~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~d 667 (1018)
T KOG2002|consen 589 TILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARD 667 (1018)
T ss_pred HHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHH
Confidence 555543222 1111222221 13445567999999999987 5599999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 048751 905 TFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQL-KYGKMEPNENLFKAVIDAYRNANREDLADLACQEMRTAF 983 (1004)
Q Consensus 905 ~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 983 (1004)
+|.+..+... -+..+|.++.++|...|++..|+++++.. .+..-.-+..+...|+.++.++|.+.+|.+.+.+.....
T Consensus 668 IFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 668 IFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 9999998533 35678999999999999999999999875 444444457899999999999999999988877766555
Q ss_pred CCCC
Q 048751 984 ESPE 987 (1004)
Q Consensus 984 ~~~~ 987 (1004)
++.+
T Consensus 747 p~~~ 750 (1018)
T KOG2002|consen 747 PSNT 750 (1018)
T ss_pred Cccc
Confidence 4443
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.5e-19 Score=197.98 Aligned_cols=600 Identities=11% Similarity=0.052 Sum_probs=346.3
Q ss_pred hHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048751 342 LQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESR--ISPDTKTYNILLSLYADVGNINAALRYY 419 (1004)
Q Consensus 342 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~ 419 (1004)
++.|...|....+.. ++|+-.+---.......|++..|+.+|...+... +.||+. -.+..++.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 488888888888763 2343333222233446778899999998876543 345543 23345667888888988888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 048751 420 WKIREVGLFPDSVTQRAILHILC-QRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGL 498 (1004)
Q Consensus 420 ~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 498 (1004)
.+..+. .|+.+.-...+..+- ...+ ...+..+..++...-..++.
T Consensus 223 ~ralqL--dp~~v~alv~L~~~~l~~~d--------------------------------~~s~~~~~~ll~~ay~~n~~ 268 (1018)
T KOG2002|consen 223 ERALQL--DPTCVSALVALGEVDLNFND--------------------------------SDSYKKGVQLLQRAYKENNE 268 (1018)
T ss_pred HHHHhc--ChhhHHHHHHHHHHHHHccc--------------------------------hHHHHHHHHHHHHHHhhcCC
Confidence 888873 443222111111111 1111 12233444444444445555
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 499 SSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQ-KKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSL 577 (1004)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 577 (1004)
+|.+.+.|++.|...|++..++.+...+....-. ..-..+|.-+.++|-..|++++|...|.+..+....--...+.-+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 5555566666666666666555555544331100 011223555566666666666666666555543221112233445
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048751 578 VQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLG----QLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAA 653 (1004)
Q Consensus 578 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 653 (1004)
.+.+.+.|+++.+...|+...+.. +.+..+...|...|...+ ..+.|..++.+..+.. +.|...|-.+...+..
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 556666666666666666665542 334445555555555443 3455555555555432 3445566555555554
Q ss_pred cCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHH
Q 048751 654 TGKVEEALQYFRMMR----ECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEM---EGGPDT------VASNTMISL 720 (1004)
Q Consensus 654 ~g~~~~A~~~~~~m~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~l~~~ 720 (1004)
..-+. ++.+|..+. ..+-.+.+...|.+.......|++..|...|...... ...++. .+-..+..+
T Consensus 427 ~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 33332 244444332 3333355566666666666667777776666665543 111222 222335555
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCG 800 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 800 (1004)
+-..++.+.|.+.|..+.+..|.-+..|..++.+....+...+|...+......+ ..++..+.-+...+.+...+..|.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccc
Confidence 6666677777777777777777777777777666666667777777777766532 244555555666666666666666
Q ss_pred HHHHHHHHCC-CCCChhhHHHHHHHHHc------------CCCcHHHHHHHHhHhhccCCchh-hhHHHHHHHHHhhhHh
Q 048751 801 ELLHEMLTQK-LLPDNGTFKVLFTILKK------------GGFPIEAVKQLQSSYQEVKPYAS-EAIITSVYSVVGLNAL 866 (1004)
Q Consensus 801 ~~~~~~~~~~-~~p~~~~~~~l~~~~~~------------~g~~~~A~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 866 (1004)
+-|....+.- ..+|......|...+.. .+..++|+..+.++++..|.... ..-++.+++..|++++
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchH
Confidence 6555554331 22444444444443321 12345666677777766654433 4455677888888888
Q ss_pred hhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 867 ALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ-GLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 867 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
|..+|.++.+... ....+|-.++++|...|++-.|+++|+...+. +..-++.....|..++.+.|.+.+|.+.+....
T Consensus 665 A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 665 ARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8888888877753 35667888888888888888888888887764 333467788888888888888888888876654
Q ss_pred cCCCCCc--HHHHHHHH------------------HHHHhcCChhHHHHHHHHHHhhcCC
Q 048751 946 YGKMEPN--ENLFKAVI------------------DAYRNANREDLADLACQEMRTAFES 985 (1004)
Q Consensus 946 ~~~~~p~--~~~~~~l~------------------~~~~~~g~~~~A~~~~~~m~~~~~~ 985 (1004)
. +.|. ...++..+ .+....+..++|.++|..|....+.
T Consensus 744 ~--~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 744 H--LAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred H--hCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2 2343 22233221 1222334578888999988876665
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.2e-17 Score=196.98 Aligned_cols=433 Identities=12% Similarity=0.038 Sum_probs=223.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 327 STYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLY 406 (1004)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 406 (1004)
..+..+...+.+.|++++|+..|++.++. .|+...|..+..++.+.|++++|++.++..++... .+..+|..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 45667788899999999999999998875 57778888899999999999999999999988642 2567888899999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHH
Q 048751 407 ADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAK 486 (1004)
Q Consensus 407 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 486 (1004)
...|++++|+..|..+...+...+. ....++..+.. ..+.....+..+... .+......+.. +........+.
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcch
Confidence 9999999999888776654221121 11122221111 122233333332211 12222222222 11111111111
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC
Q 048751 487 IIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLG 566 (1004)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 566 (1004)
.-+.......+.....+..+...+.. ....+++++|.+.|++..+.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~e---------------------------------~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 278 AGLEDSNELDEETGNGQLQLGLKSPE---------------------------------SKADESYEEAARAFEKALDLG 324 (615)
T ss_pred hhhhcccccccccccchHHHHHHHHH---------------------------------hhhhhhHHHHHHHHHHHHhcC
Confidence 11111111111100111111111000 012344555555555554432
Q ss_pred -CCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH
Q 048751 567 -TWP-DECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVY 644 (1004)
Q Consensus 567 -~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 644 (1004)
..| ....+..+...+...|++++|...++..++.. +.....|..+...+...|++++|+..|++..+.. +.+...|
T Consensus 325 ~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~ 402 (615)
T TIGR00990 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIY 402 (615)
T ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 112 22334444444555555555555555555431 1223344555555555555555555555554432 2234555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
..+...+...|++++|+..|++..+... .+...+..+...+.+.|++++|+..+++..+..+ .+...++.+..++...
T Consensus 403 ~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 403 YHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHc
Confidence 5555555555555555555555555432 2344455555555555566666665555554322 2344555555555556
Q ss_pred CCHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCH
Q 048751 725 GMVTEAESMFNDIREKGQVDAV-------SFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQL 796 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 796 (1004)
|++++|++.|++..+..|.+.. .++.....+...|++++|+.++++..+.. |+ ...+..+...+.+.|++
T Consensus 481 g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 481 NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCH
Confidence 6666666666655554432111 11111222333466666666666655533 32 34555566666666666
Q ss_pred HHHHHHHHHHHH
Q 048751 797 RQCGELLHEMLT 808 (1004)
Q Consensus 797 ~~A~~~~~~~~~ 808 (1004)
++|+.+|++..+
T Consensus 559 ~eAi~~~e~A~~ 570 (615)
T TIGR00990 559 DEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1e-17 Score=197.65 Aligned_cols=433 Identities=11% Similarity=0.023 Sum_probs=297.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 048751 362 ITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPD-SVTQRAILHI 440 (1004)
Q Consensus 362 ~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~ 440 (1004)
..+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|+..++..++. .|+ ...|..+..+
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a 203 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Confidence 34566778888999999999999998875 577788888889999999999999999998874 354 5677888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048751 441 LCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAE 520 (1004)
Q Consensus 441 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 520 (1004)
+...|++++|+..+..+...+...+ .....++..+.. ..+... +.
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~l~----~~a~~~------------------------------~~ 248 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRN-EQSAQAVERLLK----KFAESK------------------------------AK 248 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHH----HHHHHH------------------------------HH
Confidence 8888888888887766554321111 111111111111 111111 11
Q ss_pred HHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHH---HHcCCChHHHHHHHHH
Q 048751 521 TVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDE-CTYNSLVQM---FAGGDLMGQAVDLLAE 596 (1004)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~ 596 (1004)
..+.. .+.+...+..+.. |......+.+..-+.+..+ ..+.. ..+..+... ....+++++|.+.|+.
T Consensus 249 ~~l~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~ 319 (615)
T TIGR00990 249 EILET------KPENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEK 319 (615)
T ss_pred HHHhc------CCCCCCCHHHHHH-HHHHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 11111 1111111111111 1111111111111111111 01110 011111111 1235788999999999
Q ss_pred HHhCC-C-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048751 597 MQGAG-F-KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN-EVVYGSLINGFAATGKVEEALQYFRMMRECGLW 673 (1004)
Q Consensus 597 m~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 673 (1004)
..+.+ . +.....+..+...+...|++++|+..|++.... .|+ ...|..+...+...|++++|+..|+.+.+...
T Consensus 320 al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p- 396 (615)
T TIGR00990 320 ALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS- 396 (615)
T ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 98764 2 334567788888889999999999999998875 454 66888899999999999999999999988643
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 048751 674 ANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMY 753 (1004)
Q Consensus 674 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 753 (1004)
.+..+|..+...+...|++++|...|++..+..+. +...+..+..++.+.|++++|+..|++..+..|.++..|+.++.
T Consensus 397 ~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~ 475 (615)
T TIGR00990 397 EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGE 475 (615)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 46788889999999999999999999999886543 66778888999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 048751 754 LYKTMGMLDEAIDAAEEMKLSGLLRDVI------SYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKK 827 (1004)
Q Consensus 754 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 827 (1004)
++...|++++|++.|++..+.....+.. .++..+..+...|++++|..++++.+... +.+...+..+...+..
T Consensus 476 ~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~ 554 (615)
T TIGR00990 476 LLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQ 554 (615)
T ss_pred HHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 9999999999999999998754221111 12222233445699999999999987653 2233467778889999
Q ss_pred CCCcHHHHHHHHhHhhccCC
Q 048751 828 GGFPIEAVKQLQSSYQEVKP 847 (1004)
Q Consensus 828 ~g~~~~A~~~l~~~~~~~~~ 847 (1004)
.|+.++|+..++++.+..+.
T Consensus 555 ~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 555 QGDVDEALKLFERAAELART 574 (615)
T ss_pred ccCHHHHHHHHHHHHHHhcc
Confidence 99999999999988766543
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=5.9e-19 Score=197.81 Aligned_cols=309 Identities=15% Similarity=0.142 Sum_probs=188.4
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCH
Q 048751 581 FAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN---EVVYGSLINGFAATGKV 657 (1004)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~ 657 (1004)
+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344555555666666655542 23344555666666666666666666666655321111 23455666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHH
Q 048751 658 EEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDT----VASNTMISLYAELGMVTEAESM 733 (1004)
Q Consensus 658 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~ 733 (1004)
++|..+|+.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666666666542 234556666666666667777776666666654433221 1344566667777888888888
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 048751 734 FNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLP 813 (1004)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 813 (1004)
|+++.+..|.+...+..++..+.+.|++++|+++++++.+.+......+++.++.+|...|++++|...++++.+. .|
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 8887777777777777778888888888888888888776542222456677777788888888888888777654 34
Q ss_pred ChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHH
Q 048751 814 DNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAF 893 (1004)
Q Consensus 814 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 893 (1004)
+...+..+...+.+.|+.++|...+++++ +. .|+...++.++..+
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l---------------------------------~~--~P~~~~~~~l~~~~ 325 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQL---------------------------------RR--HPSLRGFHRLLDYH 325 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHH---------------------------------Hh--CcCHHHHHHHHHHh
Confidence 44444445555555555555544444433 32 22444555555554
Q ss_pred Hh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 048751 894 KS---SGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLV 934 (1004)
Q Consensus 894 ~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~ 934 (1004)
.. .|+.++|+.++++|.+++++|++. +.|.+.|.+
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 43 457788888888888777776655 335555554
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=1.1e-18 Score=195.58 Aligned_cols=304 Identities=13% Similarity=0.101 Sum_probs=222.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 048751 506 IIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPD---ECTYNSLVQMFA 582 (1004)
Q Consensus 506 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~ 582 (1004)
.+..+...|++++|...|.++.+. .+.+..++..+...+...|++++|..+++.+...+..++ ..++..+...+.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 344556667777777777777663 334455677777777777888888877777776532221 245667777777
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHH
Q 048751 583 GGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN----EVVYGSLINGFAATGKVE 658 (1004)
Q Consensus 583 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~ 658 (1004)
..|++++|..+|+.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|+++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 8888888888888877642 45566778888888888888888888888876542222 123556677778888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 659 EALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIR 738 (1004)
Q Consensus 659 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (1004)
+|..+|+++.+... .+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888877542 34556777788888888888888888888875443334567788888888899999999998888
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCh
Q 048751 739 EKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFAT---NGQLRQCGELLHEMLTQKLLPDN 815 (1004)
Q Consensus 739 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~ 815 (1004)
+..|.+ ..+..++..+.+.|++++|+.+++++.+. .|+..+++.++..+.. .|+.++++.++++|.+.++.|++
T Consensus 277 ~~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 277 EEYPGA-DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HhCCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 876654 44578888888999999999999888875 4888888887777664 45888899999988877777766
Q ss_pred h
Q 048751 816 G 816 (1004)
Q Consensus 816 ~ 816 (1004)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 5
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=3.2e-17 Score=192.25 Aligned_cols=331 Identities=10% Similarity=-0.008 Sum_probs=183.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcC
Q 048751 435 RAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKG 514 (1004)
Q Consensus 435 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 514 (1004)
..++..+.+.|++++|..+++........ +...+..++.+....|++++|...++++....|.+..++..++..+...|
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 33455555666666666666666655333 33445555555556666666666666666666666666666666666666
Q ss_pred CHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 048751 515 LWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLL 594 (1004)
Q Consensus 515 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 594 (1004)
++++|...+.++... .+.+...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...+
T Consensus 125 ~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 125 QYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHH
Confidence 666666666666553 33445555666666666666666666666555443221 2222222 2345556666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHC
Q 048751 595 AEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEE----ALQYFRMMREC 670 (1004)
Q Consensus 595 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~ 670 (1004)
+.+.+....++...+..+...+.+.|++++|+..++++.... +.+...+..+...|...|++++ |+..|+...+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 665544222233333344455556666666666666655542 2334555555666666666553 55556655554
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 048751 671 GLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAA 750 (1004)
Q Consensus 671 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 750 (1004)
.+ .+...+..+...+...|++++|...+++..+..+. +...+..+..++.+.|++++|+..|+++.+..|.+...+..
T Consensus 280 ~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 280 NS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 32 24445555555566666666666666655554332 33444455555666666666666666665555554444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 048751 751 MMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 751 l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
++.++...|++++|+..|+++.+
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555566666666666666555
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=3.8e-17 Score=191.54 Aligned_cols=355 Identities=10% Similarity=0.015 Sum_probs=269.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHh
Q 048751 399 YNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYIN 478 (1004)
Q Consensus 399 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 478 (1004)
...++..+.+.|++++|..+++........+ ...+..++.+....|++++|...++++...... +...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 3445667778899999999998888864433 344555556667789999999999998876433 45677888888899
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 048751 479 EGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSL 558 (1004)
Q Consensus 479 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 558 (1004)
.|++++|...+++++...|.+..++..++..+...|++++|...+..+... .+.+...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999998888888889999999999999999999988877653 23333444333 347788999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH----HHHHHHHHHH
Q 048751 559 FKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSN----AVDLFHEMRR 634 (1004)
Q Consensus 559 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~ 634 (1004)
++.+.+....++...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++ |...|++...
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9988776544455555666777888899999999999988764 4567778888888999999885 7888888887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048751 635 AGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVAS 714 (1004)
Q Consensus 635 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 714 (1004)
.. +.+...+..+...+...|++++|+..+++..+..+ .+...+..+...+.+.|++++|...++.+.+..+. +...+
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~ 355 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWN 355 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHH
Confidence 53 34577888888999999999999999998887653 35667777888888999999999999988875433 22334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
..+..++...|+.++|...|+++.+..|.+. ...+++|...+.+..+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHh
Confidence 4456778889999999999999888876543 23445566655555543
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=7.3e-17 Score=193.58 Aligned_cols=418 Identities=11% Similarity=0.052 Sum_probs=196.4
Q ss_pred CcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHH
Q 048751 467 HSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAY 546 (1004)
Q Consensus 467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 546 (1004)
.-+...+......|+.++|++++.++....+.+..++..++..+...|++++|..+|++.... .+.+...+..++..+
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l 93 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 334444445555555555555555555444455555555566666666666666666555542 333444455555556
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 048751 547 GKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAV 626 (1004)
Q Consensus 547 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 626 (1004)
...|++++|+..++++.+.... +.. +..+...+...|+.++|...++++.+.. +.+...+..+...+...|..+.|+
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHH
Confidence 6666666666666666554221 233 5555555556666666666666665542 233344444555555556666666
Q ss_pred HHHHHHHHcCCCCCH------HHHHHHHHHH-----HhcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHH
Q 048751 627 DLFHEMRRAGVEPNE------VVYGSLINGF-----AATGKV---EEALQYFRMMREC-GLWANQI-VL----TSLIKAY 686 (1004)
Q Consensus 627 ~~~~~m~~~g~~p~~------~~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~-g~~~~~~-~~----~~li~~~ 686 (1004)
..++.... .|+. .....++... ...+++ ++|++.++.+.+. ...|+.. .+ ...+.++
T Consensus 171 ~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 171 GAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 65554432 1221 0001111111 111122 4555555555532 1112111 10 0012233
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCCH
Q 048751 687 SKIGCLEGAKQVYEKMKEMEGG-PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVD----AVSFAAMMYLYKTMGML 761 (1004)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 761 (1004)
...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+++.+..|.+ ...+..+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 4445666666666665554321 221 11123455666666666666666655544322 23344455555566666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHcCCCcHHHHHHH
Q 048751 762 DEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDN---GTFKVLFTILKKGGFPIEAVKQL 838 (1004)
Q Consensus 762 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~l 838 (1004)
++|+.+++++.+... +....+. ...-.|+. ..+..+...+...|+.++|++.+
T Consensus 327 ~eA~~~l~~~~~~~P-~~~~~~~-----------------------~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 327 PGALTVTAHTINNSP-PFLRLYG-----------------------SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred HHHHHHHHHHhhcCC-ceEeecC-----------------------CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666665554321 0000000 00001121 12223333444455555555555
Q ss_pred HhHhhccCCchh-hhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048751 839 QSSYQEVKPYAS-EAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD 917 (1004)
Q Consensus 839 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 917 (1004)
+++....|.... ...++.++...|+.++|++.++++++.. |.+...+..++..+...|++++|..+++++++ ..|+
T Consensus 383 ~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd 459 (765)
T PRK10049 383 RELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQ 459 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCC
Confidence 555444333221 1122233334444444455555555544 33455666666666677777777777777766 4565
Q ss_pred HHH
Q 048751 918 IVT 920 (1004)
Q Consensus 918 ~~t 920 (1004)
...
T Consensus 460 ~~~ 462 (765)
T PRK10049 460 DPG 462 (765)
T ss_pred CHH
Confidence 443
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=2.1e-16 Score=189.69 Aligned_cols=398 Identities=12% Similarity=0.068 Sum_probs=202.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH
Q 048751 365 NTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPD-SVTQRAILHILCQ 443 (1004)
Q Consensus 365 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 443 (1004)
.-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|..+|++..+. .|+ ...+..+...+..
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 334444455666666666666665421 233445666666666666666666666666653 232 4445555566666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048751 444 RNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVF 523 (1004)
Q Consensus 444 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 523 (1004)
.|++++|+..++++.+.... +.. +..+..++...|+.++|...+++++...|.+..++..++.++...|..++|...+
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 66666666666666655222 333 5566666667777777777777777777777777777777777777777777777
Q ss_pred hhhhhhcCCCCCH------HHHHHHHHHHH-----cCCCh---hHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHc
Q 048751 524 YGKRDLVGQKKSV------VEYNVMIKAYG-----KSKLY---DKAFSLFKVMKNL-GTWPDEC-TY----NSLVQMFAG 583 (1004)
Q Consensus 524 ~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~l~~~m~~~-g~~p~~~-t~----~~ll~~~~~ 583 (1004)
+.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+ ...+..+..
T Consensus 174 ~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 174 DDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 65432 1110 01111222221 11223 5566666666543 1122211 11 111223345
Q ss_pred CCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHH
Q 048751 584 GDLMGQAVDLLAEMQGAGFK-PQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEP---NEVVYGSLINGFAATGKVEE 659 (1004)
Q Consensus 584 ~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~ 659 (1004)
.|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..|+++....... ....+..+..++...|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 56666677666666655421 221 11223556666666777776666665432100 12334445555666666666
Q ss_pred HHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048751 660 ALQYFRMMRECGL-----------WAN---QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELG 725 (1004)
Q Consensus 660 A~~~~~~m~~~g~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 725 (1004)
|.++++.+..... .|+ ...+..+...+...|+.++|+++++++....+. +...+..++..+...|
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 6666666655321 011 112223333344444444444444444433222 2334444444444444
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 726 MVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 726 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
++++|++.++++.+..|.+...+..++..+...|++++|..+++++++
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444
No 25
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=1.9e-14 Score=159.01 Aligned_cols=642 Identities=13% Similarity=0.110 Sum_probs=364.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048751 332 LIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGN 411 (1004)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 411 (1004)
....+...|++++|..++.+.++... -+...|.+|...|-..|+.+++...+-.+...+ +-|...|..+.....+.|+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 33444455888888888888888753 366778888888888888888887776665543 2356788888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCC----cHHHHHHHHHhcCCHHHHHH
Q 048751 412 INAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEH----SVPGVMKMYINEGLLHQAKI 487 (1004)
Q Consensus 412 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~l~~~~~~~g~~~~A~~ 487 (1004)
++.|.-+|.+.++... ++...+-.-...|-+.|+...|.+.+.++.......|.. ....+++.+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888887532 233344445566777888888888888887764422221 22233444555555566666
Q ss_pred HHHHhhh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH-
Q 048751 488 IFKKCQL--DGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKN- 564 (1004)
Q Consensus 488 ~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~- 564 (1004)
.++.... ....+...++.++.+|.+...++.|.......... ...+|..-|.+- ..++ .-+.-...
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r-~~e~d~~e~~~~-----~~~~-----~~~~~~~~~ 370 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNR-ESEKDDSEWDTD-----ERRR-----EEPNALCEV 370 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcc-ccCCChhhhhhh-----hhcc-----ccccccccC
Confidence 6655544 22233334445555555555555554444333220 011111111000 0000 00000000
Q ss_pred -CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH
Q 048751 565 -LGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAG--FKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNE 641 (1004)
Q Consensus 565 -~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 641 (1004)
.+..++... --+.-++.+.+..+....+.....+.. +.-+...|.-+..+|...|++..|+.+|..+......-+.
T Consensus 371 ~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 371 GKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 011122222 112233344444444445555555544 3334556777777777778888888887777765444456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------CCCCCCHHH
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKE--------MEGGPDTVA 713 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~ 713 (1004)
..|-.+..+|...|.+++|++.|+..+...+ -+...-.+|...+.+.|+.++|.+.+..+.. ....|+...
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri 528 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRI 528 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHH
Confidence 6777777777777788888888777776532 3445566666677777888877777777432 223444445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------CCCHHHHHHHHHHHHhcCCHHHHHHHH--
Q 048751 714 SNTMISLYAELGMVTEAESMFNDIREKG-----------------------QVDAVSFAAMMYLYKTMGMLDEAIDAA-- 768 (1004)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~-- 768 (1004)
.....+.+.+.|+.++-..+-..|.... +-.......++.+-.+.++.....+..
T Consensus 529 ~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d 608 (895)
T KOG2076|consen 529 LAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSD 608 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccc
Confidence 5555667777777666555444443321 011111222333333333322221111
Q ss_pred ----HHHHHCCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCChh---hHH-HHHHHHHcCCCcHHHHHH
Q 048751 769 ----EEMKLSGLLRD-V-ISYNQVMACFATNGQLRQCGELLHEMLTQKL-LPDNG---TFK-VLFTILKKGGFPIEAVKQ 837 (1004)
Q Consensus 769 ----~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~---~~~-~l~~~~~~~g~~~~A~~~ 837 (1004)
.-....|+.-+ . ..+.-++.++++.+++.+|+.+...++.... .-+.. .+. ..+.+....+++.+|...
T Consensus 609 ~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~ 688 (895)
T KOG2076|consen 609 GTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSY 688 (895)
T ss_pred hhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 11111222122 1 2345677789999999999999999976532 22333 233 334456688999999999
Q ss_pred HHhHhhccCCc--h-hhhHHH---HHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 838 LQSSYQEVKPY--A-SEAIIT---SVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 838 l~~~~~~~~~~--~-~~~~~~---~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
++.++....-. + -...|. ..+...++...-.+.+..+.......++..+...+.-+...+.+.-|+..|.++..
T Consensus 689 lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 689 LRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence 99988763211 1 122232 12223333322333344444443333355555566677788999999999988876
Q ss_pred CCCCCC-HHHHHHHHHHHHh--------cCC--hhHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 048751 912 QGLEPD-IVTCINLVGCYGK--------AGL--VEGVKRIHSQLKYGKMEPN-ENLFKAVIDAYRNANREDLADLACQEM 979 (1004)
Q Consensus 912 ~g~~pd-~~t~~~l~~~~~~--------~g~--~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 979 (1004)
..|| +.+-.+|.-++.. .++ .-.+..++++-.+.....+ -.++..++.+|--.|-...|..++++.
T Consensus 769 --~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekv 846 (895)
T KOG2076|consen 769 --QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKV 846 (895)
T ss_pred --hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4676 4333333333321 111 1245555544432211112 467778999999999999999999999
Q ss_pred HhhcCCCCCCch
Q 048751 980 RTAFESPEHDDS 991 (1004)
Q Consensus 980 ~~~~~~~~~~~~ 991 (1004)
...++...++..
T Consensus 847 L~~~p~~~~~~~ 858 (895)
T KOG2076|consen 847 LEVSPKDVTDPK 858 (895)
T ss_pred hCCCcccccccc
Confidence 988765555544
No 26
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=2.1e-13 Score=144.49 Aligned_cols=499 Identities=12% Similarity=0.064 Sum_probs=395.5
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 322 KPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNI 401 (1004)
Q Consensus 322 ~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 401 (1004)
.|++...|-.. ......+.|.-++.+..+. ++.+.. |.-++.+..-|+.|.++++...+. ++-+...|.+
T Consensus 376 iP~sv~LWKaA----VelE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWit 445 (913)
T KOG0495|consen 376 IPRSVRLWKAA----VELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWIT 445 (913)
T ss_pred CCchHHHHHHH----HhccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHH
Confidence 36767667544 3456677788888888874 232333 334556677899999999999875 5667788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--CCcHHHHHHH
Q 048751 402 LLSLYADVGNINAALRYYWKI----REVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHID--EHSVPGVMKM 475 (1004)
Q Consensus 402 li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~ 475 (1004)
-...--..|+.+...+++.+- ...|+.-+...|-.=...+-..|.+-.+..++...+.-|++-. ..++..-.+.
T Consensus 446 aa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~ 525 (913)
T KOG0495|consen 446 AAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQS 525 (913)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHH
Confidence 888888889999888887654 4568888888888888888888999999999998888887643 3578888889
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHH
Q 048751 476 YINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKA 555 (1004)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 555 (1004)
|.+.+.++-|..+|..++...+.....|...+..--..|..++-..+|+++... .+.....|-...+.+-..|++..|
T Consensus 526 ~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHH
Confidence 999999999999999999999999999999999989999999999999988875 556666787778888889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 048751 556 FSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRA 635 (1004)
Q Consensus 556 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 635 (1004)
..++.+..+.... +...|..-+.....+..++.|..+|.+.... .|+..+|..-+...--.++.++|++++++..+.
T Consensus 604 r~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 604 RVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999998886543 6677888888888999999999999888764 577778877777777788999999999888875
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048751 636 GVEPN-EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVAS 714 (1004)
Q Consensus 636 g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 714 (1004)
-|+ ...|..+...+.+.++++.|.+.|..=.+. ++-....|..|.+.--+.|..-.|..++++..-.++. +...|
T Consensus 681 --fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lw 756 (913)
T KOG0495|consen 681 --FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLW 756 (913)
T ss_pred --CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhH
Confidence 455 567888888888888888888887765543 3344556777777777888999999999988876655 77888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNG 794 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 794 (1004)
-..|.+-.+.|+.++|..+..+..+..|.+...|..-|.+..+.++-..++..+++. +-|+.....+...|....
T Consensus 757 le~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 757 LESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999888888888766666555543 367777888888888899
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhcc
Q 048751 795 QLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEV 845 (1004)
Q Consensus 795 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 845 (1004)
++++|.+.|.+.++.+ +-...++..++.-+...|..++-.+++.......
T Consensus 832 k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 9999999999987642 2234567777777778887777666666554433
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=6.1e-14 Score=155.03 Aligned_cols=629 Identities=12% Similarity=0.052 Sum_probs=312.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhH
Q 048751 217 AGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLST 296 (1004)
Q Consensus 217 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1004)
.|++++|.+++.+.++.. +.....|.+|...|-..|+.+++..++--.
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llA------------------------------- 199 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLA------------------------------- 199 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHH-------------------------------
Confidence 377777777777766652 234446777777777777776666554221
Q ss_pred HHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC
Q 048751 297 ELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGN 376 (1004)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 376 (1004)
.-..|.|...|-.+.....+.|+++.|.-.|.+.++... ++...+---...|-+.|+
T Consensus 200 ----------------------AHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~ 256 (895)
T KOG2076|consen 200 ----------------------AHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGD 256 (895)
T ss_pred ----------------------HhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhCh
Confidence 112355556677777777777777777777777776632 233333334455667777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 377 LSEAEALFCMMEESRISPDTKTY----NILLSLYADVGNINAALRYYWKIREVG-LFPDSVTQRAILHILCQRNMVQEAE 451 (1004)
Q Consensus 377 ~~~A~~l~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~ 451 (1004)
...|.+-|.++.....+-|..-. -..+..+...++.+.|++.++.....+ -..+...++.++..+.+...++.|.
T Consensus 257 ~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~ 336 (895)
T KOG2076|consen 257 LKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKAL 336 (895)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhh
Confidence 77777777777765322122212 223445556666677777776666521 2234456677777777777777777
Q ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHhcCCHHHHHHHHhhhhhhc
Q 048751 452 AVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKT-LAAIIDVYAEKGLWAEAETVFYGKRDLV 530 (1004)
Q Consensus 452 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 530 (1004)
..+..+.....++|..-+.+-- .++. -...+-....+-+.+..+ ...+.-.-.+.+...+++.-|..... .
T Consensus 337 ~~i~~~~~r~~e~d~~e~~~~~-----~~~~--~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n-~ 408 (895)
T KOG2076|consen 337 MKIVDDRNRESEKDDSEWDTDE-----RRRE--EPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN-V 408 (895)
T ss_pred HHHHHHhccccCCChhhhhhhh-----hccc--cccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc-C
Confidence 7777666532222221110000 0000 000000000000111111 11111122222223333322222111 0
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHH
Q 048751 531 GQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFS 610 (1004)
Q Consensus 531 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 610 (1004)
.+..++..|..+..+|...|++.+|+.+|..+......-+...|..+..+|...|.+++|.+.|+..+... +.+..+-.
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri 487 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARI 487 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhh
Confidence 12222333444555555555555555555555544333344445555555555555555555555554431 22233333
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------
Q 048751 611 SVIAAYARLGQLSNAVDLFHEMR--------RAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECG----------- 671 (1004)
Q Consensus 611 ~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----------- 671 (1004)
.|...+-+.|+.++|.+.+..+. ..+..|+..........+.+.|+.++-+.+...|+...
T Consensus 488 ~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~ 567 (895)
T KOG2076|consen 488 TLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNK 567 (895)
T ss_pred hHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 44444555555555555555432 11223333333334444555555554443333332210
Q ss_pred -----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH------HHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHH
Q 048751 672 -----------LWANQIVLTSLIKAYSKIGCLEGAKQVYE------KMKEMEGGPDT--VASNTMISLYAELGMVTEAES 732 (1004)
Q Consensus 672 -----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~ 732 (1004)
...........+.+-.+.++......-.. .....+...+. ..+.-++..+++.+++.+|+.
T Consensus 568 k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~ 647 (895)
T KOG2076|consen 568 KKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALS 647 (895)
T ss_pred HHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 11111222223333333333211111111 11111221111 134556778889999999999
Q ss_pred HHHHHHHcC--CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC--CC-HHHHHHHHHHHHHcCCHHHHHHH
Q 048751 733 MFNDIREKG--QVDA----VSFAAMMYLYKTMGMLDEAIDAAEEMKLS-GLL--RD-VISYNQVMACFATNGQLRQCGEL 802 (1004)
Q Consensus 733 ~~~~~~~~~--~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~ 802 (1004)
+...+.+.. -.+. ..-..++.+.+..+++..|...++.|... +.. |. ...|+...+.+.+.++-.--.++
T Consensus 648 vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~ 727 (895)
T KOG2076|consen 648 VVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRL 727 (895)
T ss_pred HHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887765 1222 23445666777888999999998888865 111 22 34566555666665554333333
Q ss_pred HHHHHHCCCCCChhh--HHHHHHHHHcCCCcHHHHHHHHhHhhccCCchh-hhHHHHHH---HHHhhhH-------hhhh
Q 048751 803 LHEMLTQKLLPDNGT--FKVLFTILKKGGFPIEAVKQLQSSYQEVKPYAS-EAIITSVY---SVVGLNA-------LALG 869 (1004)
Q Consensus 803 ~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~~~l~---~~~~~~~-------~A~~ 869 (1004)
+..+... .|+... .......+..++.+..|+..+-.+....|..|. +.+++..+ +.+++.. .++.
T Consensus 728 ~~~~~~~--~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~a 805 (895)
T KOG2076|consen 728 IMRLLVK--NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFA 805 (895)
T ss_pred HHHHhcc--CccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333222 222211 122222345677788888888888888877655 34444332 2222221 2444
Q ss_pred HHHHHHhhhcc-CCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 870 TCETLIKAEAY-LDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 870 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
++++..+...+ .-..++..++++|...|-..-|..+|++.++
T Consensus 806 fL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 806 FLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 45444444221 1345666788888888888888888888875
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=2.6e-15 Score=175.74 Aligned_cols=441 Identities=10% Similarity=0.036 Sum_probs=285.2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048751 323 PRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDT--ITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYN 400 (1004)
Q Consensus 323 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 400 (1004)
|..+.+.-.-+-...+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++..... ........
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~ll 106 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLA 106 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHH
Confidence 4334444444556779999999999999999874 443 234 78888888899999999999998321 12233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcC
Q 048751 401 ILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEG 480 (1004)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 480 (1004)
.+...|...|++++|+++|+++.+.... +...+..++..+.+.++.++|++.++++.+.. |+...+..++..+...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcc
Confidence 4466888999999999999999986432 35666777888899999999999999998764 33444444555555567
Q ss_pred CHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHH--HHHHHHHH---------cC
Q 048751 481 LLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEY--NVMIKAYG---------KS 549 (1004)
Q Consensus 481 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~li~~~~---------~~ 549 (1004)
+..+|.+.++++....|.+...+..+...+.+.|-...|.++..+-.+. ..+....+ ...+.-.+ ..
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~--f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL--VSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc--cCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 7767999999999999999999999999999999999999887653321 11111111 00011111 11
Q ss_pred CC---hhHHHHHHHHHHHC-CCCCCHH-----HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048751 550 KL---YDKAFSLFKVMKNL-GTWPDEC-----TYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLG 620 (1004)
Q Consensus 550 g~---~~~A~~l~~~m~~~-g~~p~~~-----t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 620 (1004)
.+ .+.|+.-++.+... +..|... +..-.+-++...+++.++++.|+.+...+.+....+-..+.++|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 12 23444455554432 2223211 222344556677777777777777777665544456667777777777
Q ss_pred CHhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCH---HHHHH
Q 048751 621 QLSNAVDLFHEMRRAG-----VEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGL-----------WANQ---IVLTS 681 (1004)
Q Consensus 621 ~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~~~~---~~~~~ 681 (1004)
++++|..+|+++.... .+++......|..+|...+++++|..+++.+.+.-+ .|++ ..+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 7888877777775532 122344456677777777777777777777765311 0111 12233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML 761 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 761 (1004)
++..+...|++.+|.+.++++....+. |......+.+.+...|.+.+|++.++.+....|.+..+....+..+...|++
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEW 500 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhH
Confidence 444555666666666666666554332 5555566666666666666666666555555566666666666666666666
Q ss_pred HHHHHHHHHHHH
Q 048751 762 DEAIDAAEEMKL 773 (1004)
Q Consensus 762 ~~A~~~~~~~~~ 773 (1004)
++|..+.+.+.+
T Consensus 501 ~~A~~~~~~l~~ 512 (822)
T PRK14574 501 HQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHh
Confidence 666666666655
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=3.6e-13 Score=142.84 Aligned_cols=589 Identities=12% Similarity=0.027 Sum_probs=420.0
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHH
Q 048751 322 KPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDT-KTYN 400 (1004)
Q Consensus 322 ~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~ 400 (1004)
.|.++..|.+-.+.--..|++..|..+..+=-+. ++-+...| +.+ ++....+.|..+.....+. -|+. ..|-
T Consensus 281 nP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvW---Lea-iRLhp~d~aK~vvA~Avr~--~P~Sv~lW~ 353 (913)
T KOG0495|consen 281 NPKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVW---LEA-IRLHPPDVAKTVVANAVRF--LPTSVRLWL 353 (913)
T ss_pred CCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHH---HHH-HhcCChHHHHHHHHHHHHh--CCCChhhhh
Confidence 3666778877777777888888888876544433 22233344 332 2556777788888888775 3443 3332
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhc
Q 048751 401 ILLSLYADVGNINAALRYYWKIREVGLFPD-SVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINE 479 (1004)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 479 (1004)
-.+. -..+...=.+++++.++. .|+ +..|... ......++|.-++.+..+.-. +-..+..++.+.
T Consensus 354 kA~d---LE~~~~~K~RVlRKALe~--iP~sv~LWKaA----VelE~~~darilL~rAveccp-----~s~dLwlAlarL 419 (913)
T KOG0495|consen 354 KAAD---LESDTKNKKRVLRKALEH--IPRSVRLWKAA----VELEEPEDARILLERAVECCP-----QSMDLWLALARL 419 (913)
T ss_pred hHHh---hhhHHHHHHHHHHHHHHh--CCchHHHHHHH----HhccChHHHHHHHHHHHHhcc-----chHHHHHHHHHH
Confidence 2222 223444555677777764 344 4455543 345666778888888877532 123456678888
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh---hcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 048751 480 GLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRD---LVGQKKSVVEYNVMIKAYGKSKLYDKAF 556 (1004)
Q Consensus 480 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~ 556 (1004)
.-++.|..++.+..+.-|.++.+|..-+..--..|..+...++..+... ..|...+...|-.=...+-..|-.-.+.
T Consensus 420 etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQ 499 (913)
T KOG0495|consen 420 ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQ 499 (913)
T ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHH
Confidence 8999999999999999999999999999999999999888888776432 2456666777777777777888888888
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 048751 557 SLFKVMKNLGTWPD--ECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRR 634 (1004)
Q Consensus 557 ~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 634 (1004)
.+....+..|+.-. ..||+.-...|.+.+.++-|..+|...++- ++-+...|...+..--..|..+.-..+|++...
T Consensus 500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~ 578 (913)
T KOG0495|consen 500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE 578 (913)
T ss_pred HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 88888877776432 357888888899999999999999988874 355666777777666678889999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048751 635 AGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVAS 714 (1004)
Q Consensus 635 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 714 (1004)
. ++-....|......+-..|++..|..++....+... -+...|...+.......+++.|..+|.+... ..|+..+|
T Consensus 579 ~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~ 654 (913)
T KOG0495|consen 579 Q-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVW 654 (913)
T ss_pred h-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhh
Confidence 6 344566777778888888999999999999988754 3677888888888899999999999998876 45677778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATN 793 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 793 (1004)
.--+....-.++.++|.++++...+..|.-...|..++..+-+.++++.|...|..-.+.. |+ ...|..|...=.+.
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c--P~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC--PNSIPLWLLLAKLEEKD 732 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC--CCCchHHHHHHHHHHHh
Confidence 7777777788999999999999999988888999999999999999999999888877643 65 55777777777888
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHH
Q 048751 794 GQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCET 873 (1004)
Q Consensus 794 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~ 873 (1004)
|.+-+|..++++..-++ +-+...|...+..=.+.|..++|...+-+++++.|.. ..+|..-....+...+--.. ..
T Consensus 733 ~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s--g~LWaEaI~le~~~~rkTks-~D 808 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS--GLLWAEAIWLEPRPQRKTKS-ID 808 (913)
T ss_pred cchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc--chhHHHHHHhccCcccchHH-HH
Confidence 89999999999886553 3455567778888888999999998888888887763 23343222222221111111 11
Q ss_pred HHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 874 LIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD-IVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 874 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
++++. ..|+...-.++..+....++++|.+.|.+.++ ..|| ..+|..+..-..+.|.-++-.+++....
T Consensus 809 ALkkc-e~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 809 ALKKC-EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHhc-cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 11211 23555666666666666677777777777665 3443 4456656666666666666666666554
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.8e-16 Score=159.94 Aligned_cols=479 Identities=14% Similarity=0.101 Sum_probs=286.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcH-HHHHHHHHhcCCHHHHHHHHHHhhhcCCC-----CHHHHHH
Q 048751 432 VTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSV-PGVMKMYINEGLLHQAKIIFKKCQLDGGL-----SSKTLAA 505 (1004)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~ 505 (1004)
.+...|.+-|..+....+|+..++-+++....|+...+ ..+...+.+...+.+|+++++-.+..-|. ...+.+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 34445566677777888899999888888888887655 45667788888899999998877654432 2346677
Q ss_pred HHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHH--------HHH
Q 048751 506 IIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTY--------NSL 577 (1004)
Q Consensus 506 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--------~~l 577 (1004)
++-.+.+.|+++.|+..|+...+ ..|+..+--.|+-++..-|+.++..+.|.+|......||..-| ..|
T Consensus 282 igvtfiq~gqy~dainsfdh~m~---~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCME---EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHH---hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 77788888999999988888766 5666665444555666678888888888888765443433322 112
Q ss_pred HHHHHcCCC--------hHHHHHHH---HHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 048751 578 VQMFAGGDL--------MGQAVDLL---AEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGS 646 (1004)
Q Consensus 578 l~~~~~~~~--------~~~a~~~~---~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 646 (1004)
+.--.+... -..|.+.. .+++.--+.|+.. . -.+..++.++.-....+..+.. ..
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~-g~dwcle~lk~s~~~~la~dle--i~ 424 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------A-GCDWCLESLKASQHAELAIDLE--IN 424 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------c-ccHHHHHHHHHhhhhhhhhhhh--hh
Confidence 211111110 01111111 1111111111110 1 1233344443332211111111 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 647 LINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSK--IGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
-...|.++|+++.|+++++-+...+-+.-...-+.|...+.- -.++..|.+..+....... -+......-.+.-...
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFAN 503 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeec
Confidence 234577899999999999888765443333333333333322 3467777777766654322 1333333333445567
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
|++++|.+.|.+....+.....+...+...+...|++++|++.|-++... +..+..+...+...|....+..+|++++.
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 89999999999998877666777777788888999999999999887652 22456777888888999999999999998
Q ss_pred HHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHH-HHHHHHHhhhHhhhhHHHHHHhhhccCCc
Q 048751 805 EMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAII-TSVYSVVGLNALALGTCETLIKAEAYLDS 883 (1004)
Q Consensus 805 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~~~A~~~~~~~~~~~~~~~~ 883 (1004)
+.... ++.|+..+..+...|-+.|+..+|....-..++-.|......-| +..|....-.++|+..|+++.-. .|+.
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~ 659 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQ 659 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccH
Confidence 77543 55677788889999999999888887777666655544333222 23333334444455555544333 2344
Q ss_pred hhHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048751 884 FIYNVAIY-AFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGL 933 (1004)
Q Consensus 884 ~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~ 933 (1004)
.-|..++. ++.+.|++++|+++|+...++ +.-|..++..|++.|...|.
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 44544443 223445555555555554432 21144455555555444443
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=1.4e-14 Score=169.69 Aligned_cols=445 Identities=10% Similarity=0.005 Sum_probs=254.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 502 TLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSV-VEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQM 580 (1004)
Q Consensus 502 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 580 (1004)
+...-+-...+.|+++.|+..|.++.+ ..|+. .....++..+...|+.++|+..+++..... .........+...
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~---~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~l 111 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESK---AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARA 111 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh---hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHH
Confidence 333344444555555555555555544 22221 111144455555555555555555554210 1112222222334
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 581 FAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEA 660 (1004)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 660 (1004)
+...|++++|.++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence 455555555555555555542 233444445555555555555555555555543 34433333333333333444445
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHH---------HcC---C
Q 048751 661 LQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVAS--NTMISLYA---------ELG---M 726 (1004)
Q Consensus 661 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~---------~~g---~ 726 (1004)
++.++++.+..+ .+...+..+..++.+.|-...|.++..+-... +.+....+ ...+.-.+ ... -
T Consensus 189 L~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 189 LQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 555555555432 23444455555555555555555444331100 01010000 00000000 011 2
Q ss_pred HHHHHHHHHHHHHcC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048751 727 VTEAESMFNDIREKG---QVD----AVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQC 799 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 799 (1004)
.+.|+.-++.+.... |+. ..+..-.+-++...|++.++++.|+.+...+......+-..+.++|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 455666666666533 322 1233455667788888888888888888777543455667788888888888888
Q ss_pred HHHHHHHHHCCC-----CCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCC------------chh----hhHHHHHH
Q 048751 800 GELLHEMLTQKL-----LPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKP------------YAS----EAIITSVY 858 (1004)
Q Consensus 800 ~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~------------~~~----~~~~~~l~ 858 (1004)
..+|+++..... .++......|+-++...++.++|..+++++.+..|. .+. ....+..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 888888855421 222333466788888888888888888888774441 111 11234456
Q ss_pred HHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHH
Q 048751 859 SVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEGV 937 (1004)
Q Consensus 859 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~A 937 (1004)
...|++.+|.+.+++++... |-|......++..+...|+..+|.+.++.+.. +.| |..+....+.++...|++++|
T Consensus 427 ~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHH
Confidence 78889999999999998776 55889999999999999999999999977765 578 466778888888899999999
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHH
Q 048751 938 KRIHSQLKYGKMEPNENLFKAVI 960 (1004)
Q Consensus 938 ~~~~~~~~~~~~~p~~~~~~~l~ 960 (1004)
..+.+.+. ...|+......|-
T Consensus 504 ~~~~~~l~--~~~Pe~~~~~~l~ 524 (822)
T PRK14574 504 ELLTDDVI--SRSPEDIPSQELD 524 (822)
T ss_pred HHHHHHHH--hhCCCchhHHHHH
Confidence 99988775 3466654444433
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.4e-13 Score=138.67 Aligned_cols=133 Identities=23% Similarity=0.301 Sum_probs=113.2
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 322 KPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNI 401 (1004)
Q Consensus 322 ~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 401 (1004)
.|....+|..||.++||-...+.|.+++++-.....+.+..+||.+|.+-. +....+++.+|....+.||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHH
Confidence 366778999999999999999999999999988877899999999997643 3333899999999999999999999
Q ss_pred HHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHH
Q 048751 402 LLSLYADVGNINA----ALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQE-AEAVIIEME 458 (1004)
Q Consensus 402 li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~ 458 (1004)
++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 9999999998765 56778999999999999999999999998887644 445555554
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.75 E-value=2.4e-13 Score=149.15 Aligned_cols=683 Identities=12% Similarity=0.072 Sum_probs=370.4
Q ss_pred CCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh
Q 048751 162 QKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVT 241 (1004)
Q Consensus 162 ~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 241 (1004)
..|..||..+|..+|.-||..|+.+.|- +|.-|.-...+.+...|+.++.+...+++.+.+. .|...|
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 4688999999999999999999999998 8888888888888899999999999999887775 788899
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhccccccccccc--------ccccccC-CCCcchhhHH-------HhHHHHhcCCCC
Q 048751 242 MNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLE--------LDSTDDL-GSMPVSFKHF-------LSTELFRTGGRN 305 (1004)
Q Consensus 242 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~ 305 (1004)
|..|..+|...|+...-..+=+.+........+.. +-.+.+. +..|...... +...+.+.+...
T Consensus 86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999987663333222322111111110 0010011 1111111110 111112222111
Q ss_pred ccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHccCCHHHHHHHH
Q 048751 306 PISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGV-AVDTITFNTMIYTCGSHGNLSEAEALF 384 (1004)
Q Consensus 306 ~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~A~~l~ 384 (1004)
|.... ..| ....++-+... ..-..++.+..++ +. .|+..+|..++.+-...|+.+.|..++
T Consensus 166 Pvsa~----------~~p-----~~vfLrqnv~~--ntpvekLl~~cks-l~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 166 PVSAW----------NAP-----FQVFLRQNVVD--NTPVEKLLNMCKS-LVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred Ccccc----------cch-----HHHHHHHhccC--CchHHHHHHHHHH-hhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 11000 001 00012221111 1122222222222 22 489999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 048751 385 CMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHI 464 (1004)
Q Consensus 385 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 464 (1004)
.+|+++|++.+..-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+-.+..+|....+.+. ..
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~--------sq- 295 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG--------SQ- 295 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc--------cc-
Confidence 999999988777656566555 788888999999999999999999988777666665543222111 11
Q ss_pred CCCcHHHHHHHHHhcC-----CHH-----HHHHHHHHh-hhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhh--cC
Q 048751 465 DEHSVPGVMKMYINEG-----LLH-----QAKIIFKKC-QLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDL--VG 531 (1004)
Q Consensus 465 ~~~~~~~l~~~~~~~g-----~~~-----~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 531 (1004)
....++.-+..-.-.| +++ -....+++. +........+|..... ...+|+-++.+++-..+..- .-
T Consensus 296 ~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~ 374 (1088)
T KOG4318|consen 296 LAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRD 374 (1088)
T ss_pred hhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCcccc
Confidence 1111111111111111 000 011111111 1111111122211111 11133322222222111100 00
Q ss_pred CCCCHHHHHHHHHHHHc----------------------CCChhHHHHHHHHHHH----------------CCCCC----
Q 048751 532 QKKSVVEYNVMIKAYGK----------------------SKLYDKAFSLFKVMKN----------------LGTWP---- 569 (1004)
Q Consensus 532 ~~~~~~~~~~li~~~~~----------------------~g~~~~A~~l~~~m~~----------------~g~~p---- 569 (1004)
...++..|..++.-|.+ .....+..+++..... +...|
T Consensus 375 s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~ 454 (1088)
T KOG4318|consen 375 SGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLI 454 (1088)
T ss_pred CcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhh
Confidence 01111112111111111 1111111111111100 00000
Q ss_pred ---CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC--CCCCHHHH
Q 048751 570 ---DECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAG--VEPNEVVY 644 (1004)
Q Consensus 570 ---~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~ 644 (1004)
-...-+.++..++..-+..+++..-+.....-+ + ..|..||+-++.....+.|..+.++..... +.-|..-+
T Consensus 455 ~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m 531 (1088)
T KOG4318|consen 455 AHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLM 531 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhH
Confidence 111224445555555555555544333333211 1 468889999999999999999988876422 23345567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGLWAN--QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYA 722 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (1004)
..+.+.+.+.+....+..++.++.+.-...+ ..++--+++.....|+.+...++++-+...|..-+ .-++....
T Consensus 532 ~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhL 607 (1088)
T KOG4318|consen 532 TSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHL 607 (1088)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEe
Confidence 8888888999999999999988876422222 34555667777888888888888888776665331 11222233
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHH---HHHHH------------------HHHHHhcCCHHHHHHHHHHH----------
Q 048751 723 ELGMVTEAESMFNDIREKGQVDAV---SFAAM------------------MYLYKTMGMLDEAIDAAEEM---------- 771 (1004)
Q Consensus 723 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l------------------~~~~~~~g~~~~A~~~~~~~---------- 771 (1004)
+.++...|.++++...+...+.+. .+..+ +..|.+.|++.+|.++.+--
T Consensus 608 rkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr 687 (1088)
T KOG4318|consen 608 RKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDR 687 (1088)
T ss_pred eccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCcc
Confidence 344444455444444433322221 11111 12355666666655443210
Q ss_pred -HHCC-CCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCC---cHHHHHH
Q 048751 772 -KLSG-LLR---------DVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGF---PIEAVKQ 837 (1004)
Q Consensus 772 -~~~~-~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~ 837 (1004)
...| +.| +......|+..|.+.|+++.|..+|.++. +.|...+...+...+.+... ..++...
T Consensus 688 ~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e 764 (1088)
T KOG4318|consen 688 DTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAE 764 (1088)
T ss_pred ccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHH
Confidence 0000 000 11223457888999999999999999986 78888888888888776543 3444444
Q ss_pred HHhHhhccCCchh--hhHHH-HHHHHHhhhH-hhhhHHHHHHhhhccCCchhHHHHHHHHHhcC
Q 048751 838 LQSSYQEVKPYAS--EAIIT-SVYSVVGLNA-LALGTCETLIKAEAYLDSFIYNVAIYAFKSSG 897 (1004)
Q Consensus 838 l~~~~~~~~~~~~--~~~~~-~l~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 897 (1004)
.+.+....+.++. ..... ..+..+++.. .|.+.+++..++..+.+...+...++++....
T Consensus 765 ~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~nd 828 (1088)
T KOG4318|consen 765 TEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKND 828 (1088)
T ss_pred HHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhcC
Confidence 4454444433333 22222 2444455554 68888888888876767777777777776654
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=1.9e-14 Score=145.44 Aligned_cols=481 Identities=14% Similarity=0.151 Sum_probs=325.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHH-HHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 048751 329 YNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFN-TMIYTCGSHGNLSEAEALFCMMEESRISPD----TKTYNILL 403 (1004)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li 403 (1004)
...|..-|..+..+.+|+..++-+.+...-|+.-... .+.+.+.+...+.+|++.|+..+..-+..+ +...+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 3445666777788999999999999887778766543 345678889999999999998887532222 23566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcH--------HHHHHH
Q 048751 404 SLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSV--------PGVMKM 475 (1004)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--------~~l~~~ 475 (1004)
-.+.+.|++++|+..|+...+. .|+..+--.|+-++...|+.++..+.|..|+.....+|..-| ..++.-
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 7788999999999999998884 588877666777777889999999999999876555544322 122222
Q ss_pred HHhcCCH--------HHHHHHHHHh-hhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHH
Q 048751 476 YINEGLL--------HQAKIIFKKC-QLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAY 546 (1004)
Q Consensus 476 ~~~~g~~--------~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 546 (1004)
..+...+ ..|.+..-.. ....|.-...+. .| .+...+.+..... .+.-...--.-...+
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa--------~g-~dwcle~lk~s~~---~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA--------AG-CDWCLESLKASQH---AELAIDLEINKAGEL 429 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh--------cc-cHHHHHHHHHhhh---hhhhhhhhhhHHHHH
Confidence 2211111 1111111000 000000000000 00 0111111111000 000000001112347
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 048751 547 GKSKLYDKAFSLFKVMKNLGTWPDECTYNSL--VQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSN 624 (1004)
Q Consensus 547 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l--l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 624 (1004)
.+.|+++.|+++++-+.+..-+..+..-+.| +..+....++..|.++-+..+... .-+....+.-.+.-...|++++
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHH
Confidence 8999999999999988776433233333322 233333456778887777766532 2233333333333445799999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048751 625 AVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKE 704 (1004)
Q Consensus 625 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 704 (1004)
|.+.|++....+.......|| +.-.+...|+.++|++.|-.+..- +.-+..++..+.+.|--..+...|++++.+...
T Consensus 509 a~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 999999998654322233333 333567789999999999887643 234667788888889999999999999988776
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048751 705 MEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYN 784 (1004)
Q Consensus 705 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 784 (1004)
. ++.|+.+...|.+.|-+.|+-.+|.+.+-..-.-.|.+..+...|..-|....-+++|+.+|++..- +.|+..-|.
T Consensus 587 l-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwq 663 (840)
T KOG2003|consen 587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQ 663 (840)
T ss_pred c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHH
Confidence 4 4558889999999999999999999998888888899999999999999999999999999999876 569999998
Q ss_pred HHHHH-HHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCC
Q 048751 785 QVMAC-FATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGF 830 (1004)
Q Consensus 785 ~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 830 (1004)
.++.. +.+.|++.+|+++|+.... .++.|..++..+++.+...|.
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 77664 5678999999999999854 478889999999998887774
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=4.3e-13 Score=135.28 Aligned_cols=365 Identities=15% Similarity=0.156 Sum_probs=218.0
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 048751 532 QKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSS 611 (1004)
Q Consensus 532 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 611 (1004)
.+.+..+|..||.+.|+--..+.|.+++++......+.+..+||.+|.+-+- ....+++.+|....+.||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHH
Confidence 4555667778888888877788888888877776666777777777765432 223667777777777777777777
Q ss_pred HHHHHHHcCCHhHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 612 VIAAYARLGQLSNA----VDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEE-ALQYFRMMRECGLWANQIVLTSLIKAY 686 (1004)
Q Consensus 612 li~~~~~~g~~~~A----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~~~~~~~~~li~~~ 686 (1004)
++.+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ |..++.++...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~---------------- 342 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS---------------- 342 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh----------------
Confidence 77777777766544 3455666666777777777666666666655433 22233332211
Q ss_pred HHcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC---HHHHHHHHHH
Q 048751 687 SKIGCLEGAKQVYEKMKEMEG----GPDTVASNTMISLYAELGMVTEAESMFNDIREKG-----QVD---AVSFAAMMYL 754 (1004)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~---~~~~~~l~~~ 754 (1004)
+.-+.+ +-+...+..-++.|.+..+.+-|.++..-+.... +++ ...|..+..+
T Consensus 343 ---------------ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~l 407 (625)
T KOG4422|consen 343 ---------------LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDL 407 (625)
T ss_pred ---------------hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHH
Confidence 000001 1122233333444444444444444443332221 111 2235566667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCC-Cc-H
Q 048751 755 YKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGG-FP-I 832 (1004)
Q Consensus 755 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~-~ 832 (1004)
.|+....+.-...|+.|.-.-+.|+..+...++++..-.|+++-.-++|..++..|..-+......++..+++.. .+ .
T Consensus 408 icq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~t 487 (625)
T KOG4422|consen 408 ICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLT 487 (625)
T ss_pred HHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCC
Confidence 777778888888888888776668888888888888888888888888888877765544444444444444333 11 0
Q ss_pred HHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHH-HHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 833 EAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTC-ETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 833 ~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
-+.+.+..... -..-+..++.+.. +++.+ ...++...+..+-.+.+.|+.++|.+++.-+.+
T Consensus 488 p~r~Ql~~~~a---------------k~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~ 550 (625)
T KOG4422|consen 488 PEREQLQVAFA---------------KCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLR 550 (625)
T ss_pred hHHHHHHHHHH---------------HHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHh
Confidence 11222221111 0111122222222 22222 244666788888899999999999999999976
Q ss_pred CCC-CC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 048751 912 QGL-EP---DIVTCINLVGCYGKAGLVEGVKRIHSQLKYGK 948 (1004)
Q Consensus 912 ~g~-~p---d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 948 (1004)
.|- -| -..+..-+++.-........|...++.+...+
T Consensus 551 ~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 551 KHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred cCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 543 23 33334456666667777788888887775443
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.72 E-value=2.9e-13 Score=148.55 Aligned_cols=688 Identities=13% Similarity=0.084 Sum_probs=370.8
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhcccc
Q 048751 190 LRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGR 269 (1004)
Q Consensus 190 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 269 (1004)
.+|-.+...|+.|+-+||..||.-||..|+.+.|- +|.-|.......+...++.++.+...+++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35666778899999999999999999999999888 8998888877778888888888777666654432
Q ss_pred cccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHH---HH
Q 048751 270 LELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQD---AA 346 (1004)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~---A~ 346 (1004)
.+.+.+|+.|..+|...||+.. +.
T Consensus 80 -----------------------------------------------------ep~aDtyt~Ll~ayr~hGDli~fe~ve 106 (1088)
T KOG4318|consen 80 -----------------------------------------------------EPLADTYTNLLKAYRIHGDLILFEVVE 106 (1088)
T ss_pred -----------------------------------------------------CCchhHHHHHHHHHHhccchHHHHHHH
Confidence 1226789999999999998654 33
Q ss_pred HHHHHHH----HCCC-----------------CcCHHHHHHHHHHHHccCCHHHHHHHH----------------HHHH-
Q 048751 347 NVFAEML----KSGV-----------------AVDTITFNTMIYTCGSHGNLSEAEALF----------------CMME- 388 (1004)
Q Consensus 347 ~~~~~m~----~~g~-----------------~p~~~t~~~ll~~~~~~g~~~~A~~l~----------------~~m~- 388 (1004)
+.+..+. ..|+ -||..+. +....-.|-++.+++++ +++.
T Consensus 107 qdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~ 183 (1088)
T KOG4318|consen 107 QDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVV 183 (1088)
T ss_pred HHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhcc
Confidence 3222211 1121 1232221 11111223333333332 2221
Q ss_pred ------------HCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 389 ------------ESRI-SPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVII 455 (1004)
Q Consensus 389 ------------~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 455 (1004)
+.+. .|+..+|.+++..-..+|+++.|..++.+|++.|+.-+..-|-.|+-+ .++..-+..++.
T Consensus 184 ~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlr 260 (1088)
T KOG4318|consen 184 DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLR 260 (1088)
T ss_pred CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHH
Confidence 1111 488889999999999999999999999999999988777655555544 788888899999
Q ss_pred HHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHH-----HHHHhhhhhhc
Q 048751 456 EMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEA-----ETVFYGKRDLV 530 (1004)
Q Consensus 456 ~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-----~~~~~~~~~~~ 530 (1004)
-|.+.|+.|+..|+...+..+...|....+.+...- ........+..+.+......+.+.- ...+.+.. ..
T Consensus 261 gmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~---~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~f-Ll 336 (1088)
T KOG4318|consen 261 GMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQL---AHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLF-LL 336 (1088)
T ss_pred HHHHhcCCCCcchhHHHHHhhhcchhhhhcccccch---hhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHH-Hh
Confidence 999999999999998888877775553222221110 0111122223332221111111111 11111110 01
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC--CCC-CHHHHHHHHHHHHcCCChHHHHHHHH--HHHhCCCCCC
Q 048751 531 GQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLG--TWP-DECTYNSLVQMFAGGDLMGQAVDLLA--EMQGAGFKPQ 605 (1004)
Q Consensus 531 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~--~m~~~g~~~~ 605 (1004)
|.......|...+.. ...|+-++..++-..|..-. ..+ ++..|..++.-|.+.-..-....++. ..+.. ..+
T Consensus 337 g~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~--~l~ 413 (1088)
T KOG4318|consen 337 GTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSL--NLN 413 (1088)
T ss_pred ccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--hhc
Confidence 222233445443333 23677777777766664321 111 23344444433332111111111111 00000 000
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHH----cCC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRR----AGV-------EPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWA 674 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 674 (1004)
....-.++....+. +...+.+-+..+.. .-. .+-...-+.++..++..-+..+++..-+.....-+ +
T Consensus 414 se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~ 491 (1088)
T KOG4318|consen 414 SEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A 491 (1088)
T ss_pred hhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h
Confidence 00001111111111 11112111111110 000 11123445666667766666666655444433211 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHH
Q 048751 675 NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEG--GPDTVASNTMISLYAELGMVTEAESMFNDIREKG---QVDAVSFA 749 (1004)
Q Consensus 675 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~ 749 (1004)
..|..||+-++...+.+.|..+.++...... ..+..-+..+.+.+.+.+....+.+++..+.+.- +....+..
T Consensus 492 --g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f 569 (1088)
T KOG4318|consen 492 --GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILF 569 (1088)
T ss_pred --hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHH
Confidence 5688888888888888888888888765332 3455567778888888888888888888887643 22234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-----
Q 048751 750 AMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTI----- 824 (1004)
Q Consensus 750 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~----- 824 (1004)
.+.+.....|+.+.-.++++-+...|+... --++....+.++...|.+..+..... ..|.+.....+.+.
T Consensus 570 ~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~ke~ 644 (1088)
T KOG4318|consen 570 PLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQK-YKPYPKDLEGLCRLVYKET 644 (1088)
T ss_pred HHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHH-hcCChHHHHHHHHHHHhhc
Confidence 666777778888877777777776655332 12223334455555555554443221 23333333322222
Q ss_pred ----------------HHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhh---hHh-hhhHHHHHHhhhccCCch
Q 048751 825 ----------------LKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGL---NAL-ALGTCETLIKAEAYLDSF 884 (1004)
Q Consensus 825 ----------------~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-A~~~~~~~~~~~~~~~~~ 884 (1004)
+.++|+..+|.+..+..-- .++.++ .++ -+...+..++.. .+..
T Consensus 645 td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~--------------r~r~~RDr~~de~e~~~lEll~elt--~~lg 708 (1088)
T KOG4318|consen 645 TDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGV--------------RCRNGRDRDTDEGEIVPLELLLELT--HELG 708 (1088)
T ss_pred cccHHHHHhhcchhHHHHhcccccchhhccccCcc--------------cccCCCccccccCccccHHHHHHHH--hHhH
Confidence 2333333333332221110 010000 000 011122222221 1223
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHH-cCCCCCcHHH-HHHH
Q 048751 885 IYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAG---LVEGVKRIHSQLK-YGKMEPNENL-FKAV 959 (1004)
Q Consensus 885 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g---~~~~A~~~~~~~~-~~~~~p~~~~-~~~l 959 (1004)
...-|+..|..+|+++.|..+|.++. +.|+..+...|+..+.+.. ++.++..-.+++. .....|.++. |.-.
T Consensus 709 ~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~ 785 (1088)
T KOG4318|consen 709 KNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGY 785 (1088)
T ss_pred HHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhh
Confidence 33448889999999999999999997 7899999999988887543 3344544444442 2233344333 2333
Q ss_pred HHHHHhcCChhHHHHHHHHHHhh
Q 048751 960 IDAYRNANREDLADLACQEMRTA 982 (1004)
Q Consensus 960 ~~~~~~~g~~~~A~~~~~~m~~~ 982 (1004)
+-....-...+-|.+++++...+
T Consensus 786 a~~a~q~~qkkaAkk~f~r~eeq 808 (1088)
T KOG4318|consen 786 AFFATQTEQKKAAKKCFERLEEQ 808 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHc
Confidence 33333333445678888877765
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=3.7e-11 Score=123.13 Aligned_cols=459 Identities=11% Similarity=0.042 Sum_probs=279.2
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 048751 490 KKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWP 569 (1004)
Q Consensus 490 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 569 (1004)
+..+..+..+...|...+..-..++++..|..+|+++++. ...++..|-..+.+-.++..+..|..+++.....=+..
T Consensus 63 Ed~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 63 EDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 3333344444555666666666677777777777777663 56666677777777777777778888877776643222
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048751 570 DECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLIN 649 (1004)
Q Consensus 570 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 649 (1004)
|. .|-..+.+--..|++..|.++|+.-.+ ..|+...|.+.|+.-.+-..++.|..++++..-. .|++.+|--...
T Consensus 141 dq-lWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyar 215 (677)
T KOG1915|consen 141 DQ-LWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYAR 215 (677)
T ss_pred HH-HHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHH
Confidence 22 233334444456778888888877765 3678888888888878888888888888877653 578888777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC
Q 048751 650 GFAATGKVEEALQYFRMMRECGL--WANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPD-TVASNTMISLYAELGM 726 (1004)
Q Consensus 650 ~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 726 (1004)
-=.+.|+...|..+|...++.-- ..+...+.++..--.++..++.|.-+|+-.+..-+... ...|..+...--+-|+
T Consensus 216 FE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 216 FEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD 295 (677)
T ss_pred HHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence 77777888888888777665310 01122333444333456677777777777766433211 2344444444444455
Q ss_pred H---HHHHH-----HHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-----HH-
Q 048751 727 V---TEAES-----MFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV--ISYNQVMA-----CF- 790 (1004)
Q Consensus 727 ~---~~A~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~-----~~- 790 (1004)
. ++++- -|+.+...+|.|..+|...+......|+.+...++|++++.. ++|-. ..|...|. +|
T Consensus 296 ~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 296 KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHH
Confidence 3 33322 255666777778888888888888888888888888888764 33321 12222111 11
Q ss_pred --HHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH----HcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhh
Q 048751 791 --ATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTIL----KKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLN 864 (1004)
Q Consensus 791 --~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 864 (1004)
....+.+.+.++|+..++. ++....|+..+--.| .++.++..|.+.+..++-..|..-.---+..+=...+++
T Consensus 375 eEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ef 453 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREF 453 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhH
Confidence 3456777788888887762 333344554433333 255667777777777766665544333334445566777
Q ss_pred HhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 048751 865 ALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGL-EPDIVTCINLVGCYGKAGLVEGVKRIHSQ 943 (1004)
Q Consensus 865 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~l~~~~~~~g~~~~A~~~~~~ 943 (1004)
+....+|++.++-+ |.+..+|...+..=...|++|.|..+|+-++.+.. .--...|-.-|+--...|.++.|..++++
T Consensus 454 DRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYer 532 (677)
T KOG1915|consen 454 DRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYER 532 (677)
T ss_pred HHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHH
Confidence 77777777777765 34667777777666777777777777777765311 11122344444444466777777777776
Q ss_pred HHcCCCCCcHHHHHHHH
Q 048751 944 LKYGKMEPNENLFKAVI 960 (1004)
Q Consensus 944 ~~~~~~~p~~~~~~~l~ 960 (1004)
+... .+-..+|-.++
T Consensus 533 lL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 533 LLDR--TQHVKVWISFA 547 (677)
T ss_pred HHHh--cccchHHHhHH
Confidence 6432 23333444443
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2.1e-10 Score=117.75 Aligned_cols=444 Identities=10% Similarity=0.072 Sum_probs=286.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 048751 329 YNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDT-KTYNILLSLYA 407 (1004)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~ 407 (1004)
|.--..--..++++..|..+|++.+... .-+...|..-+..-.+...+..|..+++..... -|-+ ..|--.+..--
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHH
Confidence 4444444455778889999999998765 346667777788888999999999999999875 3443 45666666777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHH
Q 048751 408 DVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKI 487 (1004)
Q Consensus 408 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 487 (1004)
..|++..|.++|++-.+ ..|+.-.|.+.|..-.+-+..+.|..++++.+-. .|+..++...+.--.+.|....|..
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHH
Confidence 78999999999999887 6799999999999999999999999999998864 4788888888888888999999999
Q ss_pred HHHHhhhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCC---hhHHHH----
Q 048751 488 IFKKCQLDGGLS---SKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKL---YDKAFS---- 557 (1004)
Q Consensus 488 ~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~---- 557 (1004)
+++.+......+ ...+.+.+..-.++..++.|..+|.-..+..........|..+...--+-|+ +++++-
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 999887644333 3466667777777888888888888877743222224445554444334444 333332
Q ss_pred -HHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHH--------HHcCCHhHHH
Q 048751 558 -LFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCL--TFSSVIAAY--------ARLGQLSNAV 626 (1004)
Q Consensus 558 -l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~--------~~~g~~~~A~ 626 (1004)
-++++...+. -|-.+|-..+......|+.+...++|+.++.. ++|-.. .|...|-.. ....+.+.+.
T Consensus 309 ~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 309 FQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 2334444443 36667777777777778888888888887764 344211 122222111 2345666666
Q ss_pred HHHHHHHHcCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 627 DLFHEMRRAGVEPNEVVYGS----LINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKM 702 (1004)
Q Consensus 627 ~~~~~m~~~g~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 702 (1004)
++|+...+. ++....||.- ...--.++.++..|.+++-..+. .-|...+|...|..-.+.++++.+..++++.
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666552 2223333332 22333345556666666655543 2355556666666666666666666666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048751 703 KEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQ--VDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV 780 (1004)
Q Consensus 703 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 780 (1004)
++.++. +..+|......-...|+.+.|..+|+-+..... .....|-+.|.--...|.++.|..+++++++.. +..
T Consensus 464 le~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~ 540 (677)
T KOG1915|consen 464 LEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHV 540 (677)
T ss_pred HhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccc
Confidence 665443 455555555555566666666666666655542 233455555666666666666666666666533 333
Q ss_pred HHHHHHH
Q 048751 781 ISYNQVM 787 (1004)
Q Consensus 781 ~~~~~l~ 787 (1004)
.+|.+..
T Consensus 541 kvWisFA 547 (677)
T KOG1915|consen 541 KVWISFA 547 (677)
T ss_pred hHHHhHH
Confidence 3444443
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.5e-12 Score=133.85 Aligned_cols=414 Identities=13% Similarity=-0.007 Sum_probs=229.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC-CCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCH
Q 048751 438 LHILCQRNMVQEAEAVIIEMEKCGLHID-EHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLW 516 (1004)
Q Consensus 438 i~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 516 (1004)
.+-+.++|.+++|++.+.+.++.. |+ +.-|.....+|...|++++..+.-.+.++-+|.-+.++..-+.++-..|++
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccH
Confidence 344666777777777777776643 34 566677777778888888888888888888888888888888889999998
Q ss_pred HHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHH--------HHHHH-CC--CCCCHHHHHHHHHHHHcCC
Q 048751 517 AEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLF--------KVMKN-LG--TWPDECTYNSLVQMFAGGD 585 (1004)
Q Consensus 517 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~--------~~m~~-~g--~~p~~~t~~~ll~~~~~~~ 585 (1004)
++|..-.. -.++...+....-.-.+.+++ ++-.+ .+ +.|......+....+...-
T Consensus 200 ~eal~D~t--------------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 200 DEALFDVT--------------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred HHHHHhhh--------------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 88865322 122222222222222222222 22222 22 3355544444444332110
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cC---CHhHHHHHHHHHHHc-CCC-----CCH------HHHHHHH
Q 048751 586 LMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYAR--LG---QLSNAVDLFHEMRRA-GVE-----PNE------VVYGSLI 648 (1004)
Q Consensus 586 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~-g~~-----p~~------~~~~~li 648 (1004)
......+.......+..++.. .+ .+..|...+.+-... -.. .|. .+.....
T Consensus 266 ------------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 266 ------------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred ------------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 000000000111111111110 01 122232222221110 000 011 1111111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 048751 649 NGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVT 728 (1004)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 728 (1004)
.-+.-.|+...|.+-|+..+.....++. .|..+...|....+.++....|+...+.++. ++.+|..-..++.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 1122346666777777777765543332 2555666677777777777777777666554 4555656666666667777
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 729 EAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 729 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
+|..-|++.....|.++..|..+..+..+.++++++...|++.+++- |+ +..|+.....+..++++++|.+.|+..+
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777642 44 5667777777777777777777777765
Q ss_pred HCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHH
Q 048751 808 TQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYN 887 (1004)
Q Consensus 808 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 887 (1004)
+. .|+......=+.-+. .+|+ .++.-.+++.+|++++.++++.++. .-.+|.
T Consensus 490 ~L--E~~~~~~~v~~~plV-----~Ka~--------------------l~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~ 541 (606)
T KOG0547|consen 490 EL--EPREHLIIVNAAPLV-----HKAL--------------------LVLQWKEDINQAENLLRKAIELDPK-CEQAYE 541 (606)
T ss_pred hh--ccccccccccchhhh-----hhhH--------------------hhhchhhhHHHHHHHHHHHHccCch-HHHHHH
Confidence 42 332110000000000 0010 0111236777788888888887643 557888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 048751 888 VAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 888 ~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
.|+..-.+.|+.++|+++|++...
T Consensus 542 tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 542 TLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888888888888888888887764
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=1.2e-12 Score=144.88 Aligned_cols=284 Identities=10% Similarity=-0.004 Sum_probs=184.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048751 654 TGKVEEALQYFRMMRECGLWANQI-VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAES 732 (1004)
Q Consensus 654 ~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 732 (1004)
.|+++.|.+.+....+.. +++. .|.....+..+.|+++.|.+.+.++.+....+...........+...|++++|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 577777776666654432 1222 2333344446778888888888777664333222222233567777888888888
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 733 MFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV-------ISYNQVMACFATNGQLRQCGELLHE 805 (1004)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 805 (1004)
.++++.+..|.++.++..+...|.+.|++++|++++..+.+.+..++. .+|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 888888888888888888888888888888888888888776553222 1223333333334444555555555
Q ss_pred HHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchh
Q 048751 806 MLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFI 885 (1004)
Q Consensus 806 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 885 (1004)
+.+. .+.+......+...+...|+.++|.+.+++.++..+.......++. ...++.+++++.+++.++.. |.|+..
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~-P~~~~l 330 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPR--LKTNNPEQLEKVLRQQIKQH-GDTPLL 330 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCChHHHHHHHHHHHhhC-CCCHHH
Confidence 4222 3445666677777788888888888888777763322111111111 22366667777777777665 457777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 886 YNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 886 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
+..++..+.+.|++++|.+.|+++.+ ..|+..++..+..++.+.|+.++|...+++..
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 78888888888888888888888877 57888887888888888888888888777653
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2e-11 Score=128.41 Aligned_cols=503 Identities=12% Similarity=-0.006 Sum_probs=280.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 048751 430 DSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDV 509 (1004)
Q Consensus 430 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 509 (1004)
+..-+..+++-+....++.-|.-+-++....+ -|+.....+++++.-.|+++.|..+...- .....+..+....+.+
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKC 91 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHH
Confidence 34445555555555666666666666665544 45555666777777777777777666554 2223445556666666
Q ss_pred HHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHH
Q 048751 510 YAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQ 589 (1004)
Q Consensus 510 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 589 (1004)
+.+..++++|..++.... +..+...|..--. ...-..+.+. ++.. .......+-.-...|....+.++
T Consensus 92 l~~lk~~~~al~vl~~~~----~~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGH----VETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHhcccc----hhhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHH
Confidence 777777777776665320 1111111100000 0000000000 0000 00000011111122334455666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048751 590 AVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAG----VEPNEVVYGSLINGFAATGKVEEALQYFR 665 (1004)
Q Consensus 590 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 665 (1004)
|...|.+.+.. |...+.++...-.. .+-.+.+.|+.+.... ..-+......+.........-++....-.
T Consensus 160 ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~ 233 (611)
T KOG1173|consen 160 ARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNE 233 (611)
T ss_pred HHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCc
Confidence 66666665542 33333222211110 1111111121111100 01111111111111100000000000001
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 048751 666 MMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDA 745 (1004)
Q Consensus 666 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (1004)
+..-.+..-+......-.+-+...+++.+..++.+.+.+..+ ++...+-.-|.++...|+-.+-..+=.++.+..|..+
T Consensus 234 ~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a 312 (611)
T KOG1173|consen 234 DESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA 312 (611)
T ss_pred hhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC
Confidence 011112334555556666667777888888888888777543 3444455555677788887777777778888888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 048751 746 VSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTI 824 (1004)
Q Consensus 746 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 824 (1004)
.+|.+++.-|.-.|++++|.+.|.+... +.|. ...|......|+..|..++|+..+...-+. ++....-+..+.--
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgme 389 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGME 389 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHH
Confidence 8888888888888888888888888765 3344 567888888888888888888888777432 11111122333344
Q ss_pred HHcCCCcHHHHHHHHhHhhccCCchh-hhHHHHHHHHHhhhHhhhhHHHHHHhhhccCC------chhHHHHHHHHHhcC
Q 048751 825 LKKGGFPIEAVKQLQSSYQEVKPYAS-EAIITSVYSVVGLNALALGTCETLIKAEAYLD------SFIYNVAIYAFKSSG 897 (1004)
Q Consensus 825 ~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g 897 (1004)
|.+.+...-|.+++.+++...|.++. ...++-+....+.+.+|...|++.+......+ ..+++.|+.+|.+.+
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 66677888888888888888777665 23344455667777888888877763321111 234788888888888
Q ss_pred ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 048751 898 KNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVID 961 (1004)
Q Consensus 898 ~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 961 (1004)
++++|+..|++.+. ..| |..|+..+.-++...|+++.|...+.+.. .+.|+...-..++.
T Consensus 470 ~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 470 KYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred hHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 88888888888887 455 77788888888888888888888887765 56787654444444
No 42
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.60 E-value=7.1e-09 Score=113.66 Aligned_cols=524 Identities=13% Similarity=0.088 Sum_probs=279.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCH
Q 048751 406 YADVGNINAALRYYWKIREVGLFPDSVTQRAILHI---LCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLL 482 (1004)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 482 (1004)
+-+.+..++++.-+......+..-+..++..+-.+ |+..++.+++ ++-.......-|.. +.
T Consensus 237 w~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re--------------~~ 300 (799)
T KOG4162|consen 237 WKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRE--------------NI 300 (799)
T ss_pred hcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccc--------------cH
Confidence 33456666777777777666665555555554332 3345555555 33333322222221 11
Q ss_pred HHHHHHH----HHhh-hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 048751 483 HQAKIIF----KKCQ-LDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFS 557 (1004)
Q Consensus 483 ~~A~~~~----~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 557 (1004)
+++.-.. +++. .....++.++..+.-.+...|+++.+.+.|++.... .-.....|+.+...|...|.-..|+.
T Consensus 301 ~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ 378 (799)
T KOG4162|consen 301 EDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVN 378 (799)
T ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHH
Confidence 2221111 1111 111234455556666667777777777777665432 33344557777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHH-HHHH-cCCChHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 048751 558 LFKVMKNLGTWPDECTYNSLV-QMFA-GGDLMGQAVDLLAEMQGA--GF--KPQCLTFSSVIAAYARLGQLSNAVDLFHE 631 (1004)
Q Consensus 558 l~~~m~~~g~~p~~~t~~~ll-~~~~-~~~~~~~a~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 631 (1004)
++++-......|+..+--.++ ..|. +.+.++++..+-.++++. +. ......|-.+.-+|...
T Consensus 379 ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~------------ 446 (799)
T KOG4162|consen 379 LLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQ------------ 446 (799)
T ss_pred HHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhH------------
Confidence 776655543333333222222 2222 334555555554444431 00 01111222222222110
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 048751 632 MRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDT 711 (1004)
Q Consensus 632 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 711 (1004)
... ++..+ .+.....++++.+++..+.+. .|+.+.-.+.--|...++++.|.+..++..+.+..-+.
T Consensus 447 A~~----a~~~s--------eR~~~h~kslqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~ 513 (799)
T KOG4162|consen 447 ARQ----ANLKS--------ERDALHKKSLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSA 513 (799)
T ss_pred hhc----CCChH--------HHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccH
Confidence 000 00000 001123456677777766554 23333333444566677778888888777777666677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFA 791 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 791 (1004)
..|..++-.+...+++.+|+.+.+...+..+.|......-+..-..-++.++|+.....++.. -.+.....
T Consensus 514 ~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q------- 584 (799)
T KOG4162|consen 514 KAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQ------- 584 (799)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHh-------
Confidence 777777777777788888888888777776666555555555555566777776665555431 00000000
Q ss_pred HcCCHHHHHHHHHHHHH-CC-CCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchh----h---hHHHHHHHHHh
Q 048751 792 TNGQLRQCGELLHEMLT-QK-LLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYAS----E---AIITSVYSVVG 862 (1004)
Q Consensus 792 ~~g~~~~A~~~~~~~~~-~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~----~---~~~~~l~~~~~ 862 (1004)
..++-....+....+.- .. ..-...++..+.......+....-...+........+... . ...+.++...+
T Consensus 585 ~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~ 664 (799)
T KOG4162|consen 585 QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSG 664 (799)
T ss_pred hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcC
Confidence 00111111111111100 00 0011112322222221111100000001111111111110 1 12233456666
Q ss_pred hhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHH--
Q 048751 863 LNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD-IVTCINLVGCYGKAGLVEGVKR-- 939 (1004)
Q Consensus 863 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l~~~~~~~g~~~~A~~-- 939 (1004)
..++|...+.++-+.. +..+..|+..+..+...|.+.+|.+.|...+. +.|| +.....+..++.+.|+..-|..
T Consensus 665 ~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~ 741 (799)
T KOG4162|consen 665 NDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRS 741 (799)
T ss_pred CchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHH
Confidence 7777777777776664 55778899999999999999999999999887 7896 5577888889999998876666
Q ss_pred HHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCC
Q 048751 940 IHSQLKYGKMEPN-ENLFKAVIDAYRNANREDLADLACQEMRTAFESP 986 (1004)
Q Consensus 940 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 986 (1004)
++..+.. +.|+ ...|..++.++.+.|+.+.|.+.++......++.
T Consensus 742 ~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 742 LLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 8777763 4676 7899999999999999999999998776555443
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=1.6e-12 Score=144.84 Aligned_cols=291 Identities=13% Similarity=0.031 Sum_probs=171.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048751 652 AATGKVEEALQYFRMMRECGLWAN-QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEA 730 (1004)
Q Consensus 652 ~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 730 (1004)
...|+++.|.+.+....+.. |+ ...+-....+..+.|+.+.|.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 34678888888887766643 33 2334445566777788888888888876654333333444457777788888888
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHH
Q 048751 731 ESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYN----QVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
...++.+.+..|.++.++..++.++...|++++|.+.+.++.+.+.. +...+. .........+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888888888888888888888888888888888888888877653 332221 1111123333333334455555
Q ss_pred HHCCC---CCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCc
Q 048751 807 LTQKL---LPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDS 883 (1004)
Q Consensus 807 ~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~ 883 (1004)
.+... ..+...+..+...+...|+.++|.+.+++.+++.++.....
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~------------------------------- 300 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS------------------------------- 300 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch-------------------------------
Confidence 43311 12556666666777777777777777777766555432110
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H--HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHHHHHH
Q 048751 884 FIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD-I--VTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVI 960 (1004)
Q Consensus 884 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~--~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 960 (1004)
............++.+++++.+++..+ ..|+ + ....++.+.+.+.|++++|.++++........|+...+.+++
T Consensus 301 -~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 301 -LPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred -hHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 001111111223444555555555554 2442 3 344455666666666666666666433334455555555666
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 048751 961 DAYRNANREDLADLACQEM 979 (1004)
Q Consensus 961 ~~~~~~g~~~~A~~~~~~m 979 (1004)
.++.+.|+.++|.+++++-
T Consensus 378 ~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 6666666666666666553
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=3e-11 Score=124.60 Aligned_cols=419 Identities=13% Similarity=0.049 Sum_probs=255.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVD-TITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDT-KTYNILL 403 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~li 403 (1004)
...+-....-+.++|++++|+++|.+.++. .|| .+-|.....+|...|+|+++.+--...++. .|+. ..+.--.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA 190 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRA 190 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHH
Confidence 445666777888899999999999988875 577 677788888888889999888877777765 5553 4566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------HHh-CC--CCCCCCcHHHH
Q 048751 404 SLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIE--------MEK-CG--LHIDEHSVPGV 472 (1004)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~-~g--~~~~~~~~~~l 472 (1004)
+++-..|++++|+.= +|-.+++.++-...-.--+.++++. -.+ .+ +.|......+.
T Consensus 191 ~A~E~lg~~~eal~D-------------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~sy 257 (606)
T KOG0547|consen 191 SAHEQLGKFDEALFD-------------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASY 257 (606)
T ss_pred HHHHhhccHHHHHHh-------------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 777777887777541 2222233333222222233333332 222 11 12222222222
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHh-cCCHHHHHHHHhhhhhhcCCCC-----C------HHHHH
Q 048751 473 MKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAE-KGLWAEAETVFYGKRDLVGQKK-----S------VVEYN 540 (1004)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~-----~------~~~~~ 540 (1004)
...+...-.. .-.......+...-..+-..+.. ...+..|...+.+.....-..+ | ..+..
T Consensus 258 f~sF~~~~~~-------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~ 330 (606)
T KOG0547|consen 258 FGSFHADPKP-------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL 330 (606)
T ss_pred Hhhccccccc-------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence 2211110000 00000000000011111111111 1123444444333221111111 1 11222
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048751 541 VMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLG 620 (1004)
Q Consensus 541 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 620 (1004)
.....+.-.|+.-.|...|+..+.....++.. |--+..+|...++.++....|+...+.+ +-++.+|.--...+.-.+
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHH
Confidence 22233455678888888888888876554432 6667777888888888888888888764 455666777777777778
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 621 QLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYE 700 (1004)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 700 (1004)
++++|..-|++....+ +.++..|-.+.-+..+.+++++++..|++.++. .+.-+.+|+.....+...++++.|.+.|+
T Consensus 409 q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 8888888888887753 334677777777777888888888888888876 44556788888888888888888888888
Q ss_pred HHHhCCCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 701 KMKEMEGG-------PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 701 ~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
..++.... +.+.+-.+++..-.+ +++..|..++++..+.+|....+|..|+....++|+.++|+++|++...
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 87765432 111122222222222 7888888888888888888888888888888888888888888887654
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=7.2e-11 Score=121.07 Aligned_cols=253 Identities=12% Similarity=0.053 Sum_probs=132.5
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHH
Q 048751 583 GGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVE--PNEVVYGSLINGFAATGKVEEA 660 (1004)
Q Consensus 583 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A 660 (1004)
...+.+++..-.......|++-+...-+....+.....++++|+.+|+++.+.+.- .|..+|..++-. ++.+...+
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~skLs 316 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhHHHH
Confidence 33345555555555555555444444444444455555666666666666654200 134555544422 22211111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048751 661 LQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREK 740 (1004)
Q Consensus 661 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (1004)
.-.-.-..-... -+.|...+.+-|.-.++.++|...|++..+.++. ...+|+.+..-|....+...|++-++.+.+.
T Consensus 317 ~LA~~v~~idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 317 YLAQNVSNIDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHhccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 000000000111 2234455555556666666666666666655443 4455666666666666666666666666666
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 048751 741 GQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKV 820 (1004)
Q Consensus 741 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 820 (1004)
+|.|-.+|..|+++|.-.+...-|+-.|++..+..+ -|...|.+|..+|.+.++.++|+..|.+....|-. +...+..
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~ 471 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVR 471 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHH
Confidence 666666666666666666666666666666665221 23556666666666666666666666666544322 3345555
Q ss_pred HHHHHHcCCCcHHHHHHHHhHh
Q 048751 821 LFTILKKGGFPIEAVKQLQSSY 842 (1004)
Q Consensus 821 l~~~~~~~g~~~~A~~~l~~~~ 842 (1004)
+.+.+.+.++..+|..+++..+
T Consensus 472 LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 5555665566666555555443
No 46
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2.8e-08 Score=110.99 Aligned_cols=124 Identities=14% Similarity=0.104 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHH
Q 048751 399 YNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAI-----LHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVM 473 (1004)
Q Consensus 399 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 473 (1004)
+-.+...|.++|-...|++.|.++..- +. .++...+ +-.+.-.-.++++.++++.|....+..+..+...+.
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DI--KR-~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDI--KR-VVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHH--HH-HHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344556677778777787777665431 11 1111111 223444556788888888888888877777777777
Q ss_pred HHHHhcCCHHHHHHHHHHhhh------------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048751 474 KMYINEGLLHQAKIIFKKCQL------------DGGLSSKTLAAIIDVYAEKGLWAEAETVFYG 525 (1004)
Q Consensus 474 ~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 525 (1004)
.-|+..=..+.-.++|+.... ....++.+....+.+.++.|++.+.+++.++
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 777776666666666665432 3356778888899999999999888887644
No 47
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.57 E-value=2.4e-08 Score=106.91 Aligned_cols=531 Identities=11% Similarity=0.101 Sum_probs=305.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHH
Q 048751 397 KTYNILLSLYADVGNINAALRYYWKIREV-GLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKM 475 (1004)
Q Consensus 397 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 475 (1004)
..|...+....++|++-.-...|++.+.. -+.--...|...+.-....|-++-+..++++.++. ++......+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 45666666667777777777777766543 11122345666666666777777777777777654 33445666677
Q ss_pred HHhcCCHHHHHHHHHHhhh-------cCCCCHHHHHHHHHHHHhcCCHHHH---HHHHhhhhhhcCCCCCH--HHHHHHH
Q 048751 476 YINEGLLHQAKIIFKKCQL-------DGGLSSKTLAAIIDVYAEKGLWAEA---ETVFYGKRDLVGQKKSV--VEYNVMI 543 (1004)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~~~~~~~--~~~~~li 543 (1004)
++..+++++|.+.+..++. .++.+-..|..+.+...+.-+.-.. ..+++... +.-+|. ..|..|.
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi---~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI---RRFTDQLGFLWCSLA 255 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc---ccCcHHHHHHHHHHH
Confidence 7777777777777766543 2234445666666666655443322 22232222 233333 3577777
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----------------CC------ChHHHHHHHHHHHhCC
Q 048751 544 KAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAG----------------GD------LMGQAVDLLAEMQGAG 601 (1004)
Q Consensus 544 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----------------~~------~~~~a~~~~~~m~~~g 601 (1004)
+.|.+.|.+++|..+|++....-. ...-|..+.+.|.. .+ +++-...-|+.+....
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 778888888888888777665422 22223333333321 11 1222333333333321
Q ss_pred -----------CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 048751 602 -----------FKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN------EVVYGSLINGFAATGKVEEALQYF 664 (1004)
Q Consensus 602 -----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~ 664 (1004)
-+-++..|..-+.. ..|+..+-...|.+..+. +.|. ...|..+...|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 02223333333322 246677777777777653 3332 245788888888999999999999
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----------------CHHHHHHHHHHHHHc
Q 048751 665 RMMRECGLWAN---QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGP-----------------DTVASNTMISLYAEL 724 (1004)
Q Consensus 665 ~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~ 724 (1004)
++..+...+.- ..+|..-...-.+..+++.|.++++........| +..+|...++..-..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 98877544221 2355555566667788888888888765432211 334566667777778
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHH---cCCHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV-ISYNQVMACFAT---NGQLRQCG 800 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~A~ 800 (1004)
|-++....+|+++.+..-..+......+..+-...-++++.+++++-+..-..|+. ..|+..+..+.+ ..+.+.|.
T Consensus 491 gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 88888999999998887777777777777777888888999999888776555663 467777666543 34788899
Q ss_pred HHHHHHHHCCCCCChhhHHHHH-HHH-HcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHh-hh--HhhhhHHHHHH
Q 048751 801 ELLHEMLTQKLLPDNGTFKVLF-TIL-KKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVG-LN--ALALGTCETLI 875 (1004)
Q Consensus 801 ~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~--~~A~~~~~~~~ 875 (1004)
.+|++.++ |++|...-+..++ ..+ .+-|.-..|+..++++-...++......+.....+.. .+ ..-.++|++++
T Consensus 571 dLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaI 649 (835)
T KOG2047|consen 571 DLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAI 649 (835)
T ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 99999887 6776544222222 111 2346666677777766555444333333332222111 11 12345566666
Q ss_pred hhhccCCch-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHH
Q 048751 876 KAEAYLDSF-IYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP--DIVTCINLVGCYGKAGLVEGVKRIH 941 (1004)
Q Consensus 876 ~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~l~~~~~~~g~~~~A~~~~ 941 (1004)
+.-+..+.. ..--....=++.|..+.|..+|.--.+. +.| +..-|...=.==.+.|+-+-.++++
T Consensus 650 e~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 650 ESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 553221111 1122223335566666666666544332 334 3444544444444666644444444
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=6.4e-11 Score=124.75 Aligned_cols=511 Identities=11% Similarity=0.021 Sum_probs=298.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 327 STYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLY 406 (1004)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 406 (1004)
.-+..+++-+..+.++..|.-+-++....+..|+. --.+.+++.-.|++..|..++..-.-. .-|..+.......+
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCL 92 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHH
Confidence 44666777777788889998888888766544444 445778888888999888877654322 34777888888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHH
Q 048751 407 ADVGNINAALRYYWKIREVGLFPDSVTQRAI--LHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQ 484 (1004)
Q Consensus 407 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 484 (1004)
.+..++++|+.++..-.. .-+...|-.- ...+ ..+.+. ++ .+..........-...|......++
T Consensus 93 ~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~~~~l----~~n~~~----~~--~~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHV---ETNPFSYYEKDAANTL----ELNSAG----ED--LMINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHhcccch---hhcchhhcchhhhcee----ccCccc----cc--ccccchhceeeeeeehhhhhccHHH
Confidence 888899999888763310 0011111000 0000 000000 00 0011111111222233444555666
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048751 485 AKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKN 564 (1004)
Q Consensus 485 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 564 (1004)
|...+.+.+..+.....++..++....-.. ++-..+|... |... -.+
T Consensus 160 ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~--~Ee~~ll~~l--------~~a~---------~~~-------------- 206 (611)
T KOG1173|consen 160 ARDKYKEALLADAKCFEAFEKLVSAHMLTA--QEEFELLESL--------DLAM---------LTK-------------- 206 (611)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHhcch--hHHHHHHhcc--------cHHh---------hhh--------------
Confidence 666666654443333332222222111000 0001111000 0000 000
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH
Q 048751 565 LGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVY 644 (1004)
Q Consensus 565 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 644 (1004)
-+......+.........-+.....-....-.+..-+......-.+-+...+++.+..++++...+.. +++...+
T Consensus 207 ----ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~ 281 (611)
T KOG1173|consen 207 ----EDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCL 281 (611)
T ss_pred ----hHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchH
Confidence 01111111111110000000000000001111234455555666667777888888888888887764 5666677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
..-|.++...|+..+-..+=..+.+.- +..+.+|-++.--|...|+..+|.+.|.+....+.. -...|-.++..|.-.
T Consensus 282 ~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e 359 (611)
T KOG1173|consen 282 PLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGE 359 (611)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhc
Confidence 777778888888777777777777653 345677888887777788888888888887765443 334677788888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
|..|+|...+..+.+..+.....+.-++.-|.+.++++-|.+.|.+.....+ .|+..++-+.-.....+.+.+|..+|+
T Consensus 360 ~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred chHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHH
Confidence 8888888888888777766655566666777788888888888888776432 356777777777777788888888887
Q ss_pred HHHHC--CCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCC
Q 048751 805 EMLTQ--KLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLD 882 (1004)
Q Consensus 805 ~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~ 882 (1004)
..+.. .+.+...++. +....++-.+.+++++++|+..+++.+... |.|
T Consensus 439 ~~l~~ik~~~~e~~~w~-----------------------------p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~ 488 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWE-----------------------------PTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKD 488 (611)
T ss_pred HHHHHhhhccccccchh-----------------------------HHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCc
Confidence 76421 0111110111 112233444566667777777777777775 458
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 883 SFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGC 927 (1004)
Q Consensus 883 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~ 927 (1004)
..++.+++..|...|+.+.|++.|.+.+. +.||..+...++..
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 89999999999999999999999999886 78987666666643
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=8.6e-11 Score=120.52 Aligned_cols=355 Identities=14% Similarity=0.061 Sum_probs=241.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCC--CHHHHHHHHHHHH
Q 048751 470 PGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKK--SVVEYNVMIKAYG 547 (1004)
Q Consensus 470 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~ 547 (1004)
......+.+.|....|...|.......|-...+|..|...... .+.+..+-. +.+. ....---+..++-
T Consensus 168 YL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~---~e~~~~l~~------~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 168 YLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD---IEILSILVV------GLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch---HHHHHHHHh------cCcccchHHHHHHHHHHHH
Confidence 3333444555666666666666666666666666665554432 111111110 0111 1111112344555
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHhHH
Q 048751 548 KSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGF--KPQCLTFSSVIAAYARLGQLSNA 625 (1004)
Q Consensus 548 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A 625 (1004)
...+.++++.-.+.....|..-+...-+....+.....++++|+.+|+++.+... -.|..+|+.++ |.+..+- .
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s--k 314 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS--K 314 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH--H
Confidence 5567788888888888877754444444445555677899999999999988631 13566777665 4433321 1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048751 626 VDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEM 705 (1004)
Q Consensus 626 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 705 (1004)
+.++.+-.-.--+-...|..++.+-|.-.++.++|..+|++..+.+. .....|+.+..-|....+...|++-++.+++.
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 22222211110123456777788888888999999999999988653 34567888888899999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 706 EGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQ 785 (1004)
Q Consensus 706 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 785 (1004)
.+. |-..|-.|.++|.-.+...-|+-+|++..+..|.|...|.+|+.+|.+.++.++|++.|.+....|- .+...+..
T Consensus 394 ~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~ 471 (559)
T KOG1155|consen 394 NPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVR 471 (559)
T ss_pred Cch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHH
Confidence 554 7789999999999999999999999999999999999999999999999999999999999988654 45688999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCCCChh--hHHHHHHHHHcCCCcHHHHHHHHh
Q 048751 786 VMACFATNGQLRQCGELLHEMLTQ----KLLPDNG--TFKVLFTILKKGGFPIEAVKQLQS 840 (1004)
Q Consensus 786 l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~--~~~~l~~~~~~~g~~~~A~~~l~~ 840 (1004)
|...|-+.++..+|...|.+.++. |...+.. ....|..-+.+.++.++|..+...
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 999999999999999999887552 3332222 223344445667777776555444
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=2e-11 Score=135.05 Aligned_cols=283 Identities=13% Similarity=0.091 Sum_probs=198.5
Q ss_pred cCCHHHHHHHHhhhhhhcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHcCCChHH
Q 048751 513 KGLWAEAETVFYGKRDLVGQKKS-VVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYN--SLVQMFAGGDLMGQ 589 (1004)
Q Consensus 513 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~ 589 (1004)
.|+++.|++......+ ..+. ...|-....+..+.|+++.|...+.++.+.. |+...+. .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~---~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNAD---HAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHH
Confidence 5777777766665433 1112 2223333444477888888888888887643 4443222 33566778888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 048751 590 AVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNE-------VVYGSLINGFAATGKVEEALQ 662 (1004)
Q Consensus 590 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~ 662 (1004)
|...++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..+.. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888888887765 556677788888888888888888888888876544322 123333443344445566666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048751 663 YFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQ 742 (1004)
Q Consensus 663 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (1004)
+++.+.+. .+.++.....+...+...|+.++|.+++++..+.. ++.... ++.+....++.+++.+..+...+..|
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 66665433 23567777888888888899999988888887743 344322 23333455888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 743 VDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 743 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
.|+..+..++..+...|++++|.+.|+++.+. .|+..++..+...+.+.|+.++|.+++++...
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888888888999999999888888874 48888888888888888888888888887643
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=3e-11 Score=134.63 Aligned_cols=291 Identities=12% Similarity=0.064 Sum_probs=161.0
Q ss_pred HhcCCHHHHHHHHhhhhhhcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHH
Q 048751 511 AEKGLWAEAETVFYGKRDLVGQKKS-VVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQ 589 (1004)
Q Consensus 511 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 589 (1004)
...|+++.|.+.+....+ ..|+ ...+-....++.+.|+++.|...+.+..+....+...........+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 445666666666655443 2222 223333445556666677777766666553322222223333555566677777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHH-HHHH---HHHhcCCHHHHHHHHH
Q 048751 590 AVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYG-SLIN---GFAATGKVEEALQYFR 665 (1004)
Q Consensus 590 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~---~~~~~g~~~~A~~~~~ 665 (1004)
|...++.+.+.. +-+..++..+...+.+.|++++|.++++.+.+.++. +...+. .-.. ++...+..+.+.+.+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777777666653 345556666666777777777777777777666532 222221 1111 1122222222333444
Q ss_pred HHHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048751 666 MMRECGL---WANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVAS-NTMISLYAELGMVTEAESMFNDIREKG 741 (1004)
Q Consensus 666 ~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (1004)
.+.+... +.+...+..+...+...|+.++|.+++++..+..++.....+ ..........++.+.+.+.+++..+..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 4433221 125566666667777777777777777776665433221111 111112223456667777777777777
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 742 QVDA--VSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 742 ~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
|.|+ ....+++..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7776 6666777777777777777777774333223467666667777777777777777777765
No 52
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.54 E-value=1.6e-08 Score=108.99 Aligned_cols=580 Identities=17% Similarity=0.176 Sum_probs=314.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048751 332 LIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGN 411 (1004)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 411 (1004)
-|.+-..+..+.+|+.+++.+..+. .-..-|..+..-|...|+++.|.++|-+.- .++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 3455666788999999999888763 233446777788999999999999997642 35567889999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHH
Q 048751 412 INAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKK 491 (1004)
Q Consensus 412 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 491 (1004)
+++|.++-++.. |.......|-+-..-+-+.|++.+|.+++-.+.. | ...+.+|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p-----~~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----P-----DKAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----c-----hHHHHHHHhhCcchHHHHHHHH
Confidence 999998876653 3444566777777778889999999888754322 1 2457788888888888877766
Q ss_pred hhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH---------
Q 048751 492 CQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVM--------- 562 (1004)
Q Consensus 492 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m--------- 562 (1004)
... ..-..+...++.-|...|++..|+..|-+..+ |..-+.+|-..+.|++|.++-+.-
T Consensus 876 ~h~--d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v 943 (1636)
T KOG3616|consen 876 HHG--DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHV 943 (1636)
T ss_pred hCh--hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHH
Confidence 532 22345677788888889999999988876544 666677777777777777664321
Q ss_pred -----HHCCCCCCHHH------HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 048751 563 -----KNLGTWPDECT------YNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHE 631 (1004)
Q Consensus 563 -----~~~g~~p~~~t------~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 631 (1004)
...|-..-... ...-+...+..+.++-|..+-+...+.. .|.+ ...+...+-..|++++|-+.|-+
T Consensus 944 ~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~v--hlk~a~~ledegk~edaskhyve 1020 (1636)
T KOG3616|consen 944 AFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEV--HLKLAMFLEDEGKFEDASKHYVE 1020 (1636)
T ss_pred HHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccc--hhHHhhhhhhccchhhhhHhhHH
Confidence 01110000000 1112233345556666666555544432 1222 22233345667888888877777
Q ss_pred HHHcCCCCCHHHHHHHH-----HHHHhcC-CHHHHHHHHHH---------HHHCCCCCC--HHHHHHHHHHHHHcCCHHH
Q 048751 632 MRRAGVEPNEVVYGSLI-----NGFAATG-KVEEALQYFRM---------MRECGLWAN--QIVLTSLIKAYSKIGCLEG 694 (1004)
Q Consensus 632 m~~~g~~p~~~~~~~li-----~~~~~~g-~~~~A~~~~~~---------m~~~g~~~~--~~~~~~li~~~~~~g~~~~ 694 (1004)
..+.+ .-..||..-+ .-+.+.| ++++|.++|-. ..+... |+ +.++.--.......|++.+
T Consensus 1021 aikln--tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~-~~~l~dv~tgqar~aiee~d~~k 1097 (1636)
T KOG3616|consen 1021 AIKLN--TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHC-EDLLADVLTGQARGAIEEGDFLK 1097 (1636)
T ss_pred Hhhcc--cccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhC-hhhhHHHHhhhhhccccccchhh
Confidence 66532 1112222111 1123333 45555544411 111111 12 1233333444455677777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------HHcCCCCHHHHHHHHHHHHhc
Q 048751 695 AKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDI----------------REKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 695 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
|..++-+.. +|+. .++.|...+.|..|+++.+.. .++|.--+..+..-+.-+-+.
T Consensus 1098 ae~fllran----kp~i-----~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gargvd~fvaqak~weq~ 1168 (1636)
T KOG3616|consen 1098 AEGFLLRAN----KPDI-----ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGARGVDGFVAQAKEWEQA 1168 (1636)
T ss_pred hhhheeecC----CCch-----HHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhc
Confidence 766654433 3443 344556666777766665432 222333455566667777888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHcCCCcHHHHH
Q 048751 759 GMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDN--GTFKVLFTILKKGGFPIEAVK 836 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~ 836 (1004)
|+|.+|...+-+..+..- --..|+..| +++|-++.-+. +.|+. ........++...|..+.|.+
T Consensus 1169 gd~rkav~~~lkinrdst-----~nd~l~e~~-----~~kaadl~ikf----l~~d~nme~i~aa~~al~~~~~~e~aae 1234 (1636)
T KOG3616|consen 1169 GDWRKAVDALLKINRDST-----DNDALAEHC-----TEKAADLSIKF----LMGDENMEVIGAAGGALDEAGCHEAAAE 1234 (1636)
T ss_pred ccHHHHHHHHhhhccCCC-----CcHHHHHHH-----HHHHHhhhhhh----cCCccchhhHHhcchhhhcccccHHHHH
Confidence 888888877766533211 111222221 11222222111 12222 122222223333333333333
Q ss_pred HHHhHhhccCCchhhhHHHHHHHHH---------hhhHhhhhHHHHHHhhhccCCch---hHHHHHHHHHhcCChHHHHH
Q 048751 837 QLQSSYQEVKPYASEAIITSVYSVV---------GLNALALGTCETLIKAEAYLDSF---IYNVAIYAFKSSGKNDKALN 904 (1004)
Q Consensus 837 ~l~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~ 904 (1004)
++-..-. .+.-....+-+.-+.+. ...++..+.|++.++.....+.. -.-..+..+...++||+|++
T Consensus 1235 l~l~f~~-~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vdviaaidl~ien~qwdk~id 1313 (1636)
T KOG3616|consen 1235 LLLLFDL-SKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIENDQWDKAID 1313 (1636)
T ss_pred HHHHhhh-HHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchhHHHHHHHHHhcccHHHHHH
Confidence 3211000 00000000000000111 11223455666666654443332 24456788899999999987
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHcCCCCCc-HHHHHHH-HHHHHhcC-ChhHHHHHHHHH
Q 048751 905 TFMKMLDQGLEPDIVTCINLVGC-YGKAGLVEGVKRIHSQLKYGKMEPN-ENLFKAV-IDAYRNAN-REDLADLACQEM 979 (1004)
Q Consensus 905 ~~~~m~~~g~~pd~~t~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l-~~~~~~~g-~~~~A~~~~~~m 979 (1004)
... +++++|=..-|..+-.+ +.+.|+...|..++.+-- .+-+|. -.+|..+ -+.+.+-| +.++|..-+.++
T Consensus 1314 tak---~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~g-a~anpanfniyk~i~ed~lakpgt~~~eay~e~a~l 1388 (1636)
T KOG3616|consen 1314 TAK---KQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHG-APANPANFNIYKLIFEDMLAKPGTNCAEAYHEIADL 1388 (1636)
T ss_pred HHH---hcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhC-CCCCcccccHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 654 45678855555555433 568889888888877641 122332 3455533 34555554 445554433333
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=5.6e-14 Score=148.63 Aligned_cols=258 Identities=18% Similarity=0.177 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 048751 681 SLIKAYSKIGCLEGAKQVYEKMKEME-GGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG 759 (1004)
Q Consensus 681 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 759 (1004)
.+...+.+.|++++|.++++...... ...+...|..+.......++++.|+..++++...++.++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44566667777777777775443333 233445555566666677777777777777777766666666666666 5777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHcCCCcHHHHHHH
Q 048751 760 MLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQK-LLPDNGTFKVLFTILKKGGFPIEAVKQL 838 (1004)
Q Consensus 760 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~l 838 (1004)
++++|.+++++..+.. ++...+..++..+...++++++.++++++.... ..++...+......+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777665543 455556667777777777777777777765432 2344555556666666666666666666
Q ss_pred HhHhhccCCchh-hhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-
Q 048751 839 QSSYQEVKPYAS-EAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP- 916 (1004)
Q Consensus 839 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p- 916 (1004)
+++++..|.... ...++.++...|+.+++.+.++...+.. +.|+..|..++.+|...|+.++|+..|++..+ ..|
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~ 246 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPD 246 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc--cccc
Confidence 666665554332 2233334444455555445554444443 33555556666666666666666666666554 234
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 048751 917 DIVTCINLVGCYGKAGLVEGVKRIHSQL 944 (1004)
Q Consensus 917 d~~t~~~l~~~~~~~g~~~~A~~~~~~~ 944 (1004)
|+.....+.+++...|+.++|.++.+++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4555555666666666666666555443
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=2e-12 Score=139.08 Aligned_cols=283 Identities=15% Similarity=0.094 Sum_probs=209.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048751 656 KVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEG--GPDTVASNTMISLYAELGMVTEAESM 733 (1004)
Q Consensus 656 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 733 (1004)
+..+|+..|..+... +.-+..+...+..+|...+++++|.++|+.+.+..+ --+..+|.+.+.-+-+ .-+---+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHH
Confidence 356788888775544 323446777788888888888888888888876543 2255667666654432 2222334
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 048751 734 FNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR-DVISYNQVMACFATNGQLRQCGELLHEMLTQKLL 812 (1004)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 812 (1004)
-+.+.+..|..+.+|.+++++|.-+++.+.|++.|++.++. .| ...+|+-+..=+.....+|.|...|+..+ .
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~ 483 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----G 483 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh----c
Confidence 45566777888999999999999999999999999998873 46 47788888777888888999999998875 3
Q ss_pred CChhhHHH---HHHHHHcCCCcHHHHHHHHhHhhccCCchh-hhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHH
Q 048751 813 PDNGTFKV---LFTILKKGGFPIEAVKQLQSSYQEVKPYAS-EAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNV 888 (1004)
Q Consensus 813 p~~~~~~~---l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 888 (1004)
.|+..|++ +...|.+.++.+.|.-.++.+++..|.... ...++..+.+.|+.++|+.++++++..++ .|+-.-..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~ 562 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYH 562 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHH
Confidence 44444444 445678888888888888888887766544 34456778888888888888888888874 46666667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcH
Q 048751 889 AIYAFKSSGKNDKALNTFMKMLDQGLEPD-IVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNE 953 (1004)
Q Consensus 889 l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 953 (1004)
.+..+...+++++|+..++++.+ +.|+ ...|..++..|.+.|+.+.|..-|..+. +++|-.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~--~ldpkg 624 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWAL--DLDPKG 624 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHh--cCCCcc
Confidence 78888888899999999998887 6784 5677778888888899988888887775 445543
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=1.4e-13 Score=145.65 Aligned_cols=260 Identities=15% Similarity=0.180 Sum_probs=65.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 048751 506 IIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGD 585 (1004)
Q Consensus 506 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 585 (1004)
++.++.+.|++++|.+++.........+.+...|..+.......++++.|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 344445555555555555332211101223333334444444455555555555555544322 23333344433 3455
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048751 586 LMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAG-VEPNEVVYGSLINGFAATGKVEEALQYF 664 (1004)
Q Consensus 586 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~ 664 (1004)
++++|.+++....+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555444332 1333444444555555555555555555544321 1234444555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 048751 665 RMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVD 744 (1004)
Q Consensus 665 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 744 (1004)
++..+..+ .|......++..+...|+.+++.+++....+.. +.+...+..+..+|...|+.++|..+|++.....|.|
T Consensus 170 ~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 170 RKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 55555421 134444455555555555555555554444432 1233344455555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 745 AVSFAAMMYLYKTMGMLDEAIDAAEEM 771 (1004)
Q Consensus 745 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 771 (1004)
+.....++.++...|+.++|..+.+++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 555555555555555555555554443
No 56
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=9.4e-08 Score=106.96 Aligned_cols=247 Identities=13% Similarity=0.169 Sum_probs=155.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 048751 173 NIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEV 252 (1004)
Q Consensus 173 ~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 252 (1004)
+.++.+++..|+++++.-+.. +.|..|| |-.+++...+ -..+.|.+....|.+. .|.....+.+++.+...
T Consensus 485 ~KVi~cfAE~Gqf~KiilY~k---KvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~--~~~~~die~I~DlFme~ 555 (1666)
T KOG0985|consen 485 AKVIQCFAETGQFKKIILYAK---KVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQD--EEPLADIEQIVDLFMEL 555 (1666)
T ss_pred HHHHHHHHHhcchhHHHHHHH---HcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhcc--CCCcccHHHHHHHHHHH
Confidence 346666777777777665533 3466665 4456666666 6788888888777765 44556677888888888
Q ss_pred CChhHHHHHHHHhcccccccccccccccc--cCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCchhHHH
Q 048751 253 GEFDSADRFYKDWCLGRLELDDLELDSTD--DLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYN 330 (1004)
Q Consensus 253 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 330 (1004)
.....+..++-+.+...-...+.....+. .+-..|......+.+.||-. .-+-
T Consensus 556 N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtH-------------------------yDra 610 (1666)
T KOG0985|consen 556 NLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTH-------------------------YDRA 610 (1666)
T ss_pred HhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhcccccc-------------------------ccHH
Confidence 88888888776654332111100000000 01112222222222222211 1267
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHH-----HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 331 TLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTM-----IYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSL 405 (1004)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-----l~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 405 (1004)
.+...|.++|-++.|++.+.++.+. + ..+..+.+ +..+...-.++.+.+.++.|+..++..|..+...+..-
T Consensus 611 ~IAqLCEKAGL~qraLehytDl~DI--K-R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 611 EIAQLCEKAGLLQRALEHYTDLYDI--K-RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHhcchHHHHHHhcccHHHH--H-HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 7888999999999999988887542 1 11111111 22334455789999999999998888888877777777
Q ss_pred HHhcCCHHHHHHHHHHHHHc-----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 406 YADVGNINAALRYYWKIREV-----------GLFPDSVTQRAILHILCQRNMVQEAEAVIIE 456 (1004)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~~~-----------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (1004)
|+..=-.+.-+++|+..+.. ++.-|..+.-..|++-|+.|.+.+..++.++
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 77766667777777766542 2445666666788999999999988887654
No 57
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.48 E-value=4.3e-08 Score=105.50 Aligned_cols=603 Identities=12% Similarity=0.071 Sum_probs=304.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYA 407 (1004)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 407 (1004)
.|..++..| ..+++...++..+.+++. ..-...|.....-.+...|+-++|....+......+. +.++|..+.-.+-
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHh
Confidence 344444443 455666666666666653 1112233333333344566777777766666654333 4566666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHH
Q 048751 408 DVGNINAALRYYWKIREVGLFPD-SVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAK 486 (1004)
Q Consensus 408 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 486 (1004)
...++++|+++|+..... .|| ...|.-+.-.-.+.++++.. .
T Consensus 87 ~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~-----------------------------------~ 129 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGY-----------------------------------L 129 (700)
T ss_pred hhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhH-----------------------------------H
Confidence 666677777777666653 233 23344333333344444444 4
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHH------HHHHcCCChhHHHHHHH
Q 048751 487 IIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMI------KAYGKSKLYDKAFSLFK 560 (1004)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li------~~~~~~g~~~~A~~l~~ 560 (1004)
....+.+...+.....|..++..+.-.|....|..+.+.........++...|.... ....+.|..++|++.+.
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 444444444444444555555555555666666655555444322234444433222 22445677777777665
Q ss_pred HHHHCCCCCCHHHH-HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCCHhHHH-HHHHHHHHcCC
Q 048751 561 VMKNLGTWPDECTY-NSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVI-AAYARLGQLSNAV-DLFHEMRRAGV 637 (1004)
Q Consensus 561 ~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g~ 637 (1004)
.-... + .|...+ ..-...+.+.+++++|..++..++.. .||...|.... .++.+-.+.-+++ .+|....+.
T Consensus 210 ~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-- 283 (700)
T KOG1156|consen 210 DNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-- 283 (700)
T ss_pred hhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--
Confidence 54432 1 122222 23344556777788888888777765 35555554433 3333333333333 555555442
Q ss_pred CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCC------
Q 048751 638 EPNEVVYGSL-INGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMK----EME------ 706 (1004)
Q Consensus 638 ~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~------ 706 (1004)
.|....-..+ ++.+....-.+..-+++..+.+.|+++- +..+...|-.....+-..++.-.+. ..+
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 1211111111 1111112223344456666677776432 3333333322211111111111111 110
Q ss_pred ----CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048751 707 ----GGPDTVAS--NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV 780 (1004)
Q Consensus 707 ----~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 780 (1004)
-+|....| ..++..+-..|+++.|..+++......|.-+..|..-+.++...|++++|..++++..+.+. +|.
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR 439 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADR 439 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhH
Confidence 13444444 34566677888888888888888887777777888888888888888888888888877554 555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CChhh----HHH--HHHHHHcCCCcHHHHHHHHhHhhccCCchhhh
Q 048751 781 ISYNQVMACFATNGQLRQCGELLHEMLTQKLL--PDNGT----FKV--LFTILKKGGFPIEAVKQLQSSYQEVKPYASEA 852 (1004)
Q Consensus 781 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~----~~~--l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 852 (1004)
..-...+.-..++++.++|.++.....+.|.. .+..- |-. -..+|.+.|++.+|++-+..+..-...+....
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dq 519 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQ 519 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh
Confidence 54445666667788888888888887666541 11111 111 12356677777777766655544332222111
Q ss_pred H--------------HHHHHHHHhh----------hHhhhhHHHHHHhhhccCC---chhHHHH----HHHHHhc-CChH
Q 048751 853 I--------------ITSVYSVVGL----------NALALGTCETLIKAEAYLD---SFIYNVA----IYAFKSS-GKND 900 (1004)
Q Consensus 853 ~--------------~~~l~~~~~~----------~~~A~~~~~~~~~~~~~~~---~~~~~~l----~~~~~~~-g~~~ 900 (1004)
. +..++...+. ...|+++|-++.+.- ... ..-...+ -....+. ....
T Consensus 520 fDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p-~~~~~~~~~~~~ms~e~kk~~~k~rk~~k 598 (700)
T KOG1156|consen 520 FDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSP-NMYTNKADEIEKMSDEEKKIKKKQRKAKK 598 (700)
T ss_pred hhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCc-ccccccchhhhhccHHHHHHHHHHHHHHH
Confidence 0 0001100000 012555555555441 000 0001111 1111111 1122
Q ss_pred HHHHHHHHHHH---------CC--CCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC
Q 048751 901 KALNTFMKMLD---------QG--LEPDIVTCINLVGCYGKAGL-VEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNANR 968 (1004)
Q Consensus 901 ~A~~~~~~m~~---------~g--~~pd~~t~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 968 (1004)
+|...-..+.+ .| ++||.. .+...+.+..+ .++|.+++..+... ..-...+|-.-...|.+.|.
T Consensus 599 k~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~-~~~~~~~~iL~~ely~rk~k 674 (700)
T KOG1156|consen 599 KAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHK-GKEKGETYILSFELYYRKGK 674 (700)
T ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHh-cccchhhhhhhHHHHHHHHH
Confidence 22222222221 12 234444 33344444444 47888888777533 23335556555678899999
Q ss_pred hhHHHHHHHHHHhhcCC
Q 048751 969 EDLADLACQEMRTAFES 985 (1004)
Q Consensus 969 ~~~A~~~~~~m~~~~~~ 985 (1004)
...|....++......+
T Consensus 675 ~~l~~~~~~~~~~~~~~ 691 (700)
T KOG1156|consen 675 FLLALACLNNAEGIHGT 691 (700)
T ss_pred HHHHHHHHHhhhhhcCC
Confidence 99999998888765544
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=4.7e-10 Score=113.88 Aligned_cols=291 Identities=13% Similarity=0.132 Sum_probs=233.4
Q ss_pred cCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 048751 513 KGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVD 592 (1004)
Q Consensus 513 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 592 (1004)
.|++..|++...+..+. .+.....|-.-..+..+.|+.+.+-.++.+.-+.-..++...+-+........|++..|..
T Consensus 97 eG~~~qAEkl~~rnae~--~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH--GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhc--CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 68888888888776552 3333555666677788889999999999998886445666677777888889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 048751 593 LLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNE-------VVYGSLINGFAATGKVEEALQYFR 665 (1004)
Q Consensus 593 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~ 665 (1004)
-+..+.+.+ +-..........+|.+.|++.....++..+.+.|+-.+. .+|+.++.-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999988875 556777888899999999999999999999998876654 356777776666666666666777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 048751 666 MMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDA 745 (1004)
Q Consensus 666 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (1004)
..... .+.++..-..++.-+.+.|+.++|.++..+..+.+.+|... ..-.+.+-++...-++..++.....|.++
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 66543 44567777888889999999999999999999888776622 22235567888888888888888889999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 048751 746 VSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLP 813 (1004)
Q Consensus 746 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 813 (1004)
..+.+|+..|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+..++....-..|
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999988884 4999999999999999999999999998876443333
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.2e-11 Score=133.15 Aligned_cols=203 Identities=15% Similarity=0.109 Sum_probs=161.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 603 KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEP-NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTS 681 (1004)
Q Consensus 603 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 681 (1004)
+-.+.+|.++.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+.... -+-..|.-
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~-rhYnAwYG 494 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP-RHYNAWYG 494 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc-hhhHHHHh
Confidence 456778888888888888888888888888875 45 577888888888888888888888888876422 23335556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML 761 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 761 (1004)
+...|.+.++++.|.-.|+++.+.++. +.+....+...+.+.|+.|+|+.+++++...+|.|+..-...+..+...+++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 677788888888898888888876654 5556667778888889999999999998888888888888888888899999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048751 762 DEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKL 811 (1004)
Q Consensus 762 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 811 (1004)
++|+..++++++ +.|+ ...+..+...|-+.|+.+.|+.-|.-+.+...
T Consensus 574 ~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 574 VEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 999999999888 4465 66778888888889999988888888765433
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=1.3e-10 Score=113.89 Aligned_cols=253 Identities=15% Similarity=0.141 Sum_probs=176.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHH
Q 048751 585 DLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNE------VVYGSLINGFAATGKVE 658 (1004)
Q Consensus 585 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~ 658 (1004)
++.++|.++|-+|.+.. +.+..+--+|.+.|.+.|..+.|+++.+.+.+. ||. .....|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 45556666666665532 333444456667777777777777777776652 432 23445666777788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHH
Q 048751 659 EALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTV----ASNTMISLYAELGMVTEAESMF 734 (1004)
Q Consensus 659 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~ 734 (1004)
.|+++|..+.+.+. --......|+..|-...+|++|+++-+++.+.+..+... .|.-|...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 88888888877543 344567778888888888888888888887776654432 3445556666678899999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 048751 735 NDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPD 814 (1004)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 814 (1004)
.+..+.+|.++.+-..++..+...|+++.|++.++...+.+..--..+...|..+|.+.|+.++...++.++++... .
T Consensus 204 ~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g 281 (389)
T COG2956 204 KKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--G 281 (389)
T ss_pred HHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--C
Confidence 99999999999888999999999999999999999999876333366788899999999999999999999876533 3
Q ss_pred hhhHHHHHHHHHcCCCcHHHHHHHHhHhhc
Q 048751 815 NGTFKVLFTILKKGGFPIEAVKQLQSSYQE 844 (1004)
Q Consensus 815 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 844 (1004)
...-..+........-.+.|..++.+.+..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r 311 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR 311 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence 333333333333333345555555444443
No 61
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.46 E-value=4.2e-07 Score=97.63 Aligned_cols=272 Identities=10% Similarity=0.124 Sum_probs=145.6
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 048751 532 QKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWP------DECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQ 605 (1004)
Q Consensus 532 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 605 (1004)
.+.++..|..-+.. ..|+..+-+..|.+..+. +.| -...|..+.+.|-..|+++.|..+|++..+...+--
T Consensus 345 n~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 345 NPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred CCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 44455556554443 345566666666666543 112 123456666777777788888888877776432211
Q ss_pred ---HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-----------------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048751 606 ---CLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVE-----------------PNEVVYGSLINGFAATGKVEEALQYFR 665 (1004)
Q Consensus 606 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----------------p~~~~~~~li~~~~~~g~~~~A~~~~~ 665 (1004)
..+|..-...-.+..+++.|+++++.....--. .+...|..+++.....|-++....+++
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 234444444455566777777777665432100 122345555665566667777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHc---CCHHHHHHHHHHHHHcC
Q 048751 666 MMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTV-ASNTMISLYAEL---GMVTEAESMFNDIREKG 741 (1004)
Q Consensus 666 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 741 (1004)
.+++..+ .++.........+-....++++.+++++-+..-..|++. .|+..+.-+.+. ...+.|+.+|++..+..
T Consensus 502 riidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C 580 (835)
T KOG2047|consen 502 RIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC 580 (835)
T ss_pred HHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 7777655 344333333344445556677777777655543344443 555555544432 24677777777777754
Q ss_pred CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 742 QVDAV--SFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD--VISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 742 ~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
||... .|...+..--+.|-...|+.+++++-.. +.+. ...||..|.--+..=-+.....+|++.++
T Consensus 581 pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 581 PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 43222 2333333344456667777777775442 2232 34556555433322222233444444443
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.46 E-value=2e-09 Score=115.48 Aligned_cols=466 Identities=13% Similarity=0.065 Sum_probs=260.3
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHH
Q 048751 476 YINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKA 555 (1004)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 555 (1004)
+...+++..++++.+.++...+....+....+-.+...|+.++|......... +...+.+.|..+.-.+....++++|
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHH
Confidence 34566777777777777777777777777777777777777777776655443 2555566677766666666777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 048751 556 FSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRA 635 (1004)
Q Consensus 556 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 635 (1004)
++.|......+.. |...+.-+.-.-++.++ ++.......+..+.
T Consensus 95 iKcy~nAl~~~~d-N~qilrDlslLQ~QmRd-----------------------------------~~~~~~tr~~LLql 138 (700)
T KOG1156|consen 95 IKCYRNALKIEKD-NLQILRDLSLLQIQMRD-----------------------------------YEGYLETRNQLLQL 138 (700)
T ss_pred HHHHHHHHhcCCC-cHHHHHHHHHHHHHHHh-----------------------------------hhhHHHHHHHHHHh
Confidence 7777776664422 33333333322233333 33333333333322
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHhCCCC
Q 048751 636 GVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECG-LWANQIVLTSLI------KAYSKIGCLEGAKQVYEKMKEMEGG 708 (1004)
Q Consensus 636 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~ 708 (1004)
. +.....|..++.++.-.|+...|..+++...+.. -.|+...+.... ....+.|..++|.+.+..-... +.
T Consensus 139 ~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~ 216 (700)
T KOG1156|consen 139 R-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IV 216 (700)
T ss_pred h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HH
Confidence 1 1223444445555555555555555555544332 123333322211 2234556666666655543321 11
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHH
Q 048751 709 PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAI-DAAEEMKLSGLLRDVISYNQVM 787 (1004)
Q Consensus 709 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~l~ 787 (1004)
-....-..-.+.+.+.+++++|..++..+...+|.+...|..+..++.+-.+.-+++ .+|....+.- |-...-..+-
T Consensus 217 Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlp 294 (700)
T KOG1156|consen 217 DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLP 294 (700)
T ss_pred HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhcc
Confidence 122222344566777888888888888888888888777777777776333333444 5555554421 2111111111
Q ss_pred HHHHH-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhcc----------CCchhhhHHHH
Q 048751 788 ACFAT-NGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEV----------KPYASEAIITS 856 (1004)
Q Consensus 788 ~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----------~~~~~~~~~~~ 856 (1004)
-.... ..-.+..-.++..+++.|+++-...+..+..-=.+..-.++-+.-+...+... .+++...+|..
T Consensus 295 lsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 295 LSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred HHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHH
Confidence 11111 12222334455666777776654444444322111111111111222222111 12344455544
Q ss_pred H-----HHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048751 857 V-----YSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKA 931 (1004)
Q Consensus 857 l-----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~ 931 (1004)
. +...|+++.|.+..+.++...|. -+.-|..-++.+.+.|..++|...+++..+.. .||...-..-+.-..++
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHc
Confidence 3 46788888899999888877421 23345666789999999999999999988732 24655555666667789
Q ss_pred CChhHHHHHHHHHHcCCCCC--c----HHHHHHH--HHHHHhcCChhHHHHHHHHHHhhcCC
Q 048751 932 GLVEGVKRIHSQLKYGKMEP--N----ENLFKAV--IDAYRNANREDLADLACQEMRTAFES 985 (1004)
Q Consensus 932 g~~~~A~~~~~~~~~~~~~p--~----~~~~~~l--~~~~~~~g~~~~A~~~~~~m~~~~~~ 985 (1004)
.+.++|.+++......+... + .-+|-.+ +.+|.+.|++-+|.+=+..+...+..
T Consensus 453 n~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~ 514 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKT 514 (700)
T ss_pred cccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999998887655311 1 1234333 56888999998888887777766643
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=1.6e-10 Score=113.35 Aligned_cols=286 Identities=16% Similarity=0.182 Sum_probs=194.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHH
Q 048751 654 TGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPD---TVASNTMISLYAELGMVTEA 730 (1004)
Q Consensus 654 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 730 (1004)
.++.++|..+|-+|.+... .+..+--+|.+.|.+.|..+.|+++.+.+.+..--+. ..+...|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4677889999998887532 3444566788888889999999999888876422111 12344566777888888888
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 731 ESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVI----SYNQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
+.+|..+.+.+..-..+...|+..|....+|++|++..+++.+.+..+..+ -|.-|...+....+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~---------- 196 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV---------- 196 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH----------
Confidence 888888887766677778888888888888888888888888766444322 223333333333344
Q ss_pred HHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchh-hhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchh
Q 048751 807 LTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYAS-EAIITSVYSVVGLNALALGTCETLIKAEAYLDSFI 885 (1004)
Q Consensus 807 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 885 (1004)
+.|...+.++++..|.-.. ..+++.+....|++..|++.++.+++.++.--+.+
T Consensus 197 -------------------------d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 197 -------------------------DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred -------------------------HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 4455555555555544433 34556777788888888888888888876656677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q 048751 886 YNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYG-KAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYR 964 (1004)
Q Consensus 886 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 964 (1004)
...|..+|.+.|+.++.+..+.++.+. .++......+..... ..|.-+....+.+++. -.|+...+..|++.-.
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhh
Confidence 889999999999999999999999874 444444444444433 3444444444456664 3699988888887654
Q ss_pred h---cCChhHHHHHHHHHH
Q 048751 965 N---ANREDLADLACQEMR 980 (1004)
Q Consensus 965 ~---~g~~~~A~~~~~~m~ 980 (1004)
. .|+..+-..++++|.
T Consensus 327 ~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 327 ADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred ccccccchhhhHHHHHHHH
Confidence 3 345566666666665
No 64
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.44 E-value=4.7e-08 Score=109.80 Aligned_cols=633 Identities=12% Similarity=0.030 Sum_probs=368.7
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 048751 323 PRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRIS-PDTKTYNI 401 (1004)
Q Consensus 323 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~ 401 (1004)
|.-...|..|...|+...+...|.+.|+..-+.+. .|..........|+...+++.|..+.-..-+.... .-...|.-
T Consensus 489 ~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~ 567 (1238)
T KOG1127|consen 489 VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQ 567 (1238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhh
Confidence 34456788899999888888899999988877642 25556777888899999999998884333222100 01123444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCC
Q 048751 402 LLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGL 481 (1004)
Q Consensus 402 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 481 (1004)
..-.|.+.++..+|+.-|+...+..+ .|...|..+..+|...|++..|.++|.+....... +.........+.+..|.
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGK 645 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhh
Confidence 55567788889999998888887543 36778889999999999999999999887654321 22223344456678899
Q ss_pred HHHHHHHHHHhhhcCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCC----
Q 048751 482 LHQAKIIFKKCQLDGGLS-------SKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSK---- 550 (1004)
Q Consensus 482 ~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 550 (1004)
+.+|...+.........- ..++..++..+...|-...|...|+...+. ..+.++...+...
T Consensus 646 Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~--------f~~~l~h~~~~~~~~Wi 717 (1238)
T KOG1127|consen 646 YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES--------FIVSLIHSLQSDRLQWI 717 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH--------HHHHHHHhhhhhHHHHH
Confidence 999988888776544332 334445555555556556666666554331 0111111111000
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh---H---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c-
Q 048751 551 LYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLM---G---QAVDLLAEMQGAGFKPQCLTFSSVIAAYAR----L- 619 (1004)
Q Consensus 551 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~- 619 (1004)
-...|..+|-+.. .. .|+.....++..-.-..+.. + -+.+.+-.-++ +..+..+|..++..|.+ .
T Consensus 718 ~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~ 793 (1238)
T KOG1127|consen 718 VASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLG 793 (1238)
T ss_pred HHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcC
Confidence 0123444444433 11 24443333333323333322 1 12222222221 12334556666555554 1
Q ss_pred ---CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 620 ---GQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAK 696 (1004)
Q Consensus 620 ---g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 696 (1004)
.+...|+..++...+.. ..+..+|+.|.-. ...|++.-|...|-....... ....+|..+.-.+.+..+++.|.
T Consensus 794 et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~~~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 794 ETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TCHCQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred CcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cchhheeccceeEEecccHHHhh
Confidence 22346777777776642 4467788877655 666888888888877766533 46678888888889999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 697 QVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIRE--KG---QVDAVSFAAMMYLYKTMGMLDEAIDAAEEM 771 (1004)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 771 (1004)
..|...+...+. +...|-.........|+.-++..+|..-.+ .+ -+....|.+........|++++-+...+++
T Consensus 871 ~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 871 PAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 999998876543 556666666666678888899998887332 22 345556666666677777777666554443
Q ss_pred HH---------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCChhhHH----HHHHHHHcCCCcHHHHHH
Q 048751 772 KL---------SGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQ-KLLPDNGTFK----VLFTILKKGGFPIEAVKQ 837 (1004)
Q Consensus 772 ~~---------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g~~~~A~~~ 837 (1004)
-. .+.+.+...|...+....+.+.+.+|..+..+.+.- -..-+..+|+ .+.+.+...|..+.|...
T Consensus 950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 21 123234678888888888889998888888876321 0112222333 333344555666655433
Q ss_pred HHhHhhccCCchhhhHHHHHH--HHHhhhHhhhhHHHHHHhhhc-cCC-chhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048751 838 LQSSYQEVKPYASEAIITSVY--SVVGLNALALGTCETLIKAEA-YLD-SFIYNVAIYAFKSSGKNDKALNTFMKMLDQG 913 (1004)
Q Consensus 838 l~~~~~~~~~~~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 913 (1004)
......+ ....+.+.-+ ...++++++++.|++++...- ..| ++....++.+...++..+.|...+-+....
T Consensus 1030 ~~~~~~e----vdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l- 1104 (1238)
T KOG1127|consen 1030 SWKEWME----VDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL- 1104 (1238)
T ss_pred hcccchh----HHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-
Confidence 3221111 1112222222 347888999999999987632 222 244566677777888888998877666653
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHHH---HHHHHHHhcCChhHHHHHHHHHH
Q 048751 914 LEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFK---AVIDAYRNANREDLADLACQEMR 980 (1004)
Q Consensus 914 ~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~ 980 (1004)
-.|+......|...+.-..+-..-..+.+.+.+.. ......|. ..-.+|.+.||-......+++..
T Consensus 1105 s~~~~~sll~L~A~~ild~da~~ssaileel~kl~-k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~ 1173 (1238)
T KOG1127|consen 1105 SKVQASSLLPLPAVYILDADAHGSSAILEELEKLL-KLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAV 1173 (1238)
T ss_pred CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhh-hhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 23343333333322222222121122222222110 01111221 11235677888888888877754
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=1.3e-08 Score=100.81 Aligned_cols=448 Identities=11% Similarity=0.055 Sum_probs=265.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048751 333 IDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNI 412 (1004)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 412 (1004)
+.-+....++..|+.+++--...+-+-...+-..+..++.+.|++++|...+..+.+.. .|+...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 45566678999999988776644333223344456678889999999999999887643 56667777777777778999
Q ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHH
Q 048751 413 NAALRYYWKIREVGLFPDSV-TQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKK 491 (1004)
Q Consensus 413 ~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 491 (1004)
.+|..+-... |+.. .-..|...--+.|+-++-..+.+.+...- .--.++.......-.+.+|+.++++
T Consensus 108 ~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9998876554 3433 34445555557777777776666655321 1122344444455578888888888
Q ss_pred hhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 048751 492 CQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDE 571 (1004)
Q Consensus 492 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 571 (1004)
++.+++.-...-..++-+|.+..-++-+.+++.--... .+.+....|.......+.=.-..|..-.+++.+.+-..
T Consensus 177 vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 177 VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 88877766666667777888888888777777665552 33344455544444333222223333344444432211
Q ss_pred HHHHHHHHHHHcC-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 048751 572 CTYNSLVQMFAGG-----DLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGS 646 (1004)
Q Consensus 572 ~t~~~ll~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 646 (1004)
| ..+.-+++. .+-+.|++++-.+.+. .|. .--.|+--|.+.+++++|..+.+++.-. .|-......
T Consensus 253 --~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKg 323 (557)
T KOG3785|consen 253 --Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKG 323 (557)
T ss_pred --c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHH
Confidence 1 112222222 3445666666655542 232 2334555677888888888887766421 232222222
Q ss_pred HHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048751 647 LING-----FAATGKVEEALQYFRMMRECGLWANQI-VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL 720 (1004)
Q Consensus 647 li~~-----~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (1004)
+..+ ........-|.+.|+..-+.+..-|.. .-.++...+.-..++++.+..+..+..--...|...+ .+..+
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQA 402 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQA 402 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHH
Confidence 2221 111122455666666554444333322 2334455555566777877777776654333344444 46778
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHH
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSF-AAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYN-QVMACFATNGQLRQ 798 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~ 798 (1004)
++..|.+.+|+++|-++....-.|..+| ..|+.+|...++.+-|+.++-++.. ..+..+.. .+..-|.+.+++--
T Consensus 403 k~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877765553344444 5567788888888888776655432 12333333 34456777787777
Q ss_pred HHHHHHHHHHC
Q 048751 799 CGELLHEMLTQ 809 (1004)
Q Consensus 799 A~~~~~~~~~~ 809 (1004)
|.+.|+.+...
T Consensus 480 aaKAFd~lE~l 490 (557)
T KOG3785|consen 480 AAKAFDELEIL 490 (557)
T ss_pred HHHhhhHHHcc
Confidence 77777776543
No 66
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=6.5e-10 Score=112.87 Aligned_cols=284 Identities=15% Similarity=0.108 Sum_probs=163.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048751 654 TGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESM 733 (1004)
Q Consensus 654 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 733 (1004)
.|++..|+++..+..+.+-.| ...|..-+.+--+.|+.+.+-..+.++.+...+++....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577888888887777665432 3345556666777888888888888887765566666777777778888888888888
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 734 FNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVI-------SYNQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
.+++.+..|.++........+|.+.|++.+...++.++.+.|...|.. +|..+++-....+..+.-...|++.
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 888888888888888888888888888888888888888877655532 3444444333333333333344433
Q ss_pred HHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhH
Q 048751 807 LTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIY 886 (1004)
Q Consensus 807 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 886 (1004)
... ...++.....++.-+..+|..++|.+.+++ .++...++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~---------------------------------~Lk~~~D~~---- 297 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIED---------------------------------ALKRQWDPR---- 297 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHH---------------------------------HHHhccChh----
Confidence 211 222333333333334444444444444444 444432222
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh
Q 048751 887 NVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRN 965 (1004)
Q Consensus 887 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 965 (1004)
-.....+.+-++...=++..+.-.+. .| ++-.+.+|...|.+.+.+.+|..+++... ...|+...|..+.+++.+
T Consensus 298 L~~~~~~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~ 373 (400)
T COG3071 298 LCRLIPRLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQ 373 (400)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHH
Confidence 11111223334444444444433331 22 23445555555555555555555555443 334555555555555555
Q ss_pred cCChhHHHHHHHHHH
Q 048751 966 ANREDLADLACQEMR 980 (1004)
Q Consensus 966 ~g~~~~A~~~~~~m~ 980 (1004)
.|+.++|.++.++..
T Consensus 374 ~g~~~~A~~~r~e~L 388 (400)
T COG3071 374 LGEPEEAEQVRREAL 388 (400)
T ss_pred cCChHHHHHHHHHHH
Confidence 555555555555444
No 67
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.42 E-value=2.6e-07 Score=99.90 Aligned_cols=375 Identities=13% Similarity=0.154 Sum_probs=197.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHH
Q 048751 405 LYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQ 484 (1004)
Q Consensus 405 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 484 (1004)
.+...|+++.|+.-|-+... .-..|.+-.....+.+|+.+++.+..... ...-|..+.+.|...|+++.
T Consensus 715 hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHH
Confidence 34455666666555533321 12234445566778888888887776543 23456677788888888888
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048751 485 AKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKN 564 (1004)
Q Consensus 485 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 564 (1004)
|.++|.+. ..++..+.+|.+.|+|++|.++-.+. .|+...+..|-+-..-+-+.|++.+|.++|-....
T Consensus 784 ae~lf~e~--------~~~~dai~my~k~~kw~da~kla~e~---~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~ 852 (1636)
T KOG3616|consen 784 AEELFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE 852 (1636)
T ss_pred HHHHHHhc--------chhHHHHHHHhccccHHHHHHHHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC
Confidence 88888664 23566778888888888888776654 23555556666666667777777777777644332
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH
Q 048751 565 LGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVY 644 (1004)
Q Consensus 565 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 644 (1004)
|+ ..|.+|-+.|..+..+++.++--.. .-..|...+..-|-..|++..|...|-+..+ |
T Consensus 853 ----p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~ 911 (1636)
T KOG3616|consen 853 ----PD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------F 911 (1636)
T ss_pred ----ch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------H
Confidence 33 2456666677776666665543211 1112334445555666666666665544332 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH------------HHCCCCCCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048751 645 GSLINGFAATGKVEEALQYFRMM------------RECGLWANQI--------VLTSLIKAYSKIGCLEGAKQVYEKMKE 704 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m------------~~~g~~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~~~~ 704 (1004)
..-++.|-..+-+++|..+-+.- -...+.-+.. .+..-++..+..+.++-|.++-+...+
T Consensus 912 kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k 991 (1636)
T KOG3616|consen 912 KAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK 991 (1636)
T ss_pred HHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh
Confidence 33344444444444444332210 0000000100 111222333445555666655554443
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH------------------HHHHHHHhcCCHHHHHH
Q 048751 705 MEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFA------------------AMMYLYKTMGMLDEAID 766 (1004)
Q Consensus 705 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------------~l~~~~~~~g~~~~A~~ 766 (1004)
.. .+.+. ..+...+-..|++++|.+.|-...+.+..++.-.. ..+.++...++|..|.+
T Consensus 992 ~k-~~~vh--lk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aer 1068 (1636)
T KOG3616|consen 992 DK-MGEVH--LKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAER 1068 (1636)
T ss_pred cc-Cccch--hHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHH
Confidence 22 12222 23444566778888888888777776532221100 11223444444444444
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHH
Q 048751 767 AAEEMKLSGLLRD--VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQ 839 (1004)
Q Consensus 767 ~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~ 839 (1004)
+.+.- .|| +..|..-.+.....|++.+|..++-+.. .|+. .+.-+..++.+.+|++..+
T Consensus 1069 vae~h-----~~~~l~dv~tgqar~aiee~d~~kae~fllran----kp~i-----~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1069 VAEAH-----CEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN----KPDI-----ALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred HHHhh-----ChhhhHHHHhhhhhccccccchhhhhhheeecC----CCch-----HHHHHHHhccChHHHHHHH
Confidence 33321 133 2344455555566677777666554432 3432 2333445555666555444
No 68
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.40 E-value=4e-09 Score=118.12 Aligned_cols=581 Identities=14% Similarity=0.012 Sum_probs=339.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048751 375 GNLSEAEALFCMMEESRISPD-TKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAV 453 (1004)
Q Consensus 375 g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 453 (1004)
.+...|...|-+..+. .|+ ...|..|...|+..-+...|.++|+...+... -|...+......|....+++.|..+
T Consensus 472 K~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHH
Confidence 3466677776666654 333 36789999999998899999999999988432 2466788899999999999999988
Q ss_pred HHHHHhCC-CCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCC
Q 048751 454 IIEMEKCG-LHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQ 532 (1004)
Q Consensus 454 ~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 532 (1004)
.-..-+.. ...-...+....-.|.+.++..+|...|+..+...|.+...|..++.+|.++|++..|.++|.++... .
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 44332221 11112233345556788899999999999999999999999999999999999999999999887663 2
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh-------
Q 048751 533 KKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLG------TWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQG------- 599 (1004)
Q Consensus 533 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~------- 599 (1004)
+.+...-.-.....+..|++.+|+..+....... ..--..++..+...+...|-...+..+++.-++
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 2222222223344678899999999988775431 111122333333333344444445444444332
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---H---HHHHHHHHHHHCCCC
Q 048751 600 AGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKV---E---EALQYFRMMRECGLW 673 (1004)
Q Consensus 600 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~---~A~~~~~~m~~~g~~ 673 (1004)
.....+...|-.+ .+|..+|-... .. .|+......+..-+...+.. + -+.+.+-.-.. ..
T Consensus 707 h~~~~~~~~Wi~a----------sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~ 772 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVA----------SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LA 772 (1238)
T ss_pred HhhhhhHHHHHHH----------hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hh
Confidence 1111222222222 22333333333 11 23333333333322222222 1 11111111111 11
Q ss_pred CCHHHHHHHHHHHHH-------cC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 048751 674 ANQIVLTSLIKAYSK-------IG-CLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDA 745 (1004)
Q Consensus 674 ~~~~~~~~li~~~~~-------~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (1004)
.+..+|..++..|.+ .+ +...|+..+...++..- .+...|++|.-. ...|++.-|.-.|-+.....|.+.
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~ 850 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCH 850 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccch
Confidence 224445555544433 12 22467777777766443 366777777655 666788888888888887778888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHCCCCCChhhHHHH
Q 048751 746 VSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEM----LTQKLLPDNGTFKVL 821 (1004)
Q Consensus 746 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~p~~~~~~~l 821 (1004)
.+|..+.-.+.+..+++-|...|.......+ .|...|..........|+.-++..+|..- ...|-.|+..-+...
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 8999999999999999999999988887442 34667776666667788888888888762 223444554444444
Q ss_pred HHHHHcCCCcHHHHHHHH----------hHhhccCCchh-hhHHHHHHHHHhhhHhhhhHHHHHHhh-hccCCchhHH--
Q 048751 822 FTILKKGGFPIEAVKQLQ----------SSYQEVKPYAS-EAIITSVYSVVGLNALALGTCETLIKA-EAYLDSFIYN-- 887 (1004)
Q Consensus 822 ~~~~~~~g~~~~A~~~l~----------~~~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~-- 887 (1004)
......+|+.++-+...+ ..+.+.|.... ....+.+....+.+.+|.+.+.+++.. ....+...||
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva 1009 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA 1009 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 444455565544433222 22223333322 233345566677777777777665432 1123444455
Q ss_pred --HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcC-CCCCc-HHHHHHHHHHH
Q 048751 888 --VAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYG-KMEPN-ENLFKAVIDAY 963 (1004)
Q Consensus 888 --~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~ 963 (1004)
.+++.++..|+++.|...+...-. +-|...-..-+.. .-.++++++.+.|+++... +-+.+ +.....++.+.
T Consensus 1010 k~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~ 1085 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCM 1085 (1238)
T ss_pred hhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHH
Confidence 344556666777655444432211 1122222222222 2356777788888776532 11222 23445555566
Q ss_pred HhcCChhHHHHHHHHHHh
Q 048751 964 RNANREDLADLACQEMRT 981 (1004)
Q Consensus 964 ~~~g~~~~A~~~~~~m~~ 981 (1004)
...|..+.|...+-+...
T Consensus 1086 g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1086 GLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hhcccchHHHHHHHHHHH
Confidence 666777777665554443
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.40 E-value=1.6e-08 Score=110.96 Aligned_cols=438 Identities=14% Similarity=0.046 Sum_probs=199.8
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048751 324 RLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILL 403 (1004)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 403 (1004)
+++..|..|.-++...|+++.+.+.|++....- .-....|+.+...+...|.-..|..+++.-.....+|+..+--.++
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 346677777777888888888888888776532 2245567777777777777778888887766543334433322222
Q ss_pred -HHHH-hcCCHHHHHHHHHHHHHc--CCC--CCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhCCCCCCC
Q 048751 404 -SLYA-DVGNINAALRYYWKIREV--GLF--PDSVTQRAILHILCQR-----------NMVQEAEAVIIEMEKCGLHIDE 466 (1004)
Q Consensus 404 -~~~~-~~g~~~~A~~~~~~m~~~--g~~--p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~ 466 (1004)
..|. +.|.+++++++..++... +.. .....|..+.-+|... ....++++.+++..+.+.. |+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 2222 346677777766666552 111 1122233222222211 1122344444444443322 33
Q ss_pred CcHHHHHHHHHhcCCHHHHHHHHHHhhhc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHH
Q 048751 467 HSVPGVMKMYINEGLLHQAKIIFKKCQLD-GGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKA 545 (1004)
Q Consensus 467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 545 (1004)
.....+.--|...++++.|....++.+.. ...+..+|.-++-++...+++.+|+.+.+...+..|. |-.....-+..
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHI 556 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhh
Confidence 34444444445555555555555555444 3444445555555555555555555554444332111 11111111111
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHh
Q 048751 546 YGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGA--GFKPQCLTFSSVIAAYARLGQLS 623 (1004)
Q Consensus 546 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~ 623 (1004)
-...++.++|+.....+... .-+.... ...++-....+....+.-. .......++..+.......+...
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~--we~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLAL--WEAEYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhhcccHHHHHHHHHHHHHH--HHhhhhH-------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 22234444444433333221 0000000 0000001111111111000 00001111111111110000000
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 624 NAVDLFHEMRRAGVEPNE-VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKM 702 (1004)
Q Consensus 624 ~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 702 (1004)
.-... +...-+.|.. .+|..+ ...|......+.+.+..++|...+.+.
T Consensus 628 ~se~~---Lp~s~~~~~~~~~~~~~----------------------------~~lwllaa~~~~~~~~~~~a~~CL~Ea 676 (799)
T KOG4162|consen 628 GSELK---LPSSTVLPGPDSLWYLL----------------------------QKLWLLAADLFLLSGNDDEARSCLLEA 676 (799)
T ss_pred ccccc---cCcccccCCCCchHHHH----------------------------HHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 00000 0000001110 000000 223444555556666666666665555
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCH
Q 048751 703 KEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAID--AAEEMKLSGLLRDV 780 (1004)
Q Consensus 703 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~ 780 (1004)
....+ .....|......+...|.+++|.+.|......+|.++.+..+++.++.+.|+..-|.. ++..+.+.++ .+.
T Consensus 677 ~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~ 754 (799)
T KOG4162|consen 677 SKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNH 754 (799)
T ss_pred Hhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCH
Confidence 54332 2444555555666666666666666666666666666666666666666666555555 6666666442 345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 781 ISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 781 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
..|..+...+-+.|+.++|.+.|....
T Consensus 755 eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 755 EAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 666666666666666666666666654
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.3e-08 Score=101.36 Aligned_cols=287 Identities=12% Similarity=0.069 Sum_probs=183.1
Q ss_pred HHcCCHhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHH
Q 048751 617 ARLGQLSNAVDLFHEMRRA-GVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQI-VLTSLIKAYSKIGCLEG 694 (1004)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~ 694 (1004)
+-.++...|...+-.+... -++.|+.....+..++...|+.++|+..|+...-.+ |+.. ......-.+.+.|+++.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhh
Confidence 3345555565555444432 345678888999999999999999999999887643 3322 22233334567888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 695 AKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 695 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
...+...+.... +-....|-.-+..+....+++.|+.+-++.++.++.+...|..-+.++...|+.++|.-.|+....
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~- 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM- 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh-
Confidence 888877776532 123344444455666778899999999999999899999999999999999999999999999887
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHH-cCCCcHHHHHHHHhHhhccCCchhh
Q 048751 775 GLLR-DVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLF-TILK-KGGFPIEAVKQLQSSYQEVKPYASE 851 (1004)
Q Consensus 775 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~ 851 (1004)
+.| +...|..|+.+|...|++.+|...-+..... +..+..++..+. ..+. ...--++|.+++++.+...|.....
T Consensus 363 -Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A 440 (564)
T KOG1174|consen 363 -LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA 440 (564)
T ss_pred -cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHH
Confidence 344 5789999999999999999998888776543 333344444331 2222 1122355666666665555543332
Q ss_pred -hHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 852 -AIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 852 -~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
..+..+....|.+++++..+++.+.. .+|....+.|+..+...+.+++|++.|..++.
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 22334444444555555555544444 22444444455555555555555555544443
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=8.6e-08 Score=95.22 Aligned_cols=412 Identities=14% Similarity=0.071 Sum_probs=255.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 048751 368 IYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMV 447 (1004)
Q Consensus 368 l~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 447 (1004)
+.-+....++..|+.+++.-...+-+-...+-.-+..++.+.|++++|+..|..+... -.|+...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 6666778899999999987765432222233344566778899999999999888774 456777777787777788999
Q ss_pred HHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 048751 448 QEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKR 527 (1004)
Q Consensus 448 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 527 (1004)
.+|..+.....+ ++-....+.....+.++-.+-..+...+.. ..+-...|+.+......+.+|++++.++.
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887655432 233345556666677777777666665533 22445666777677778889999998886
Q ss_pred hhcCCCCCHHHHHHHHH-HHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 048751 528 DLVGQKKSVVEYNVMIK-AYGKSKLYDKAFSLFKVMKNLGTWPD-ECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQ 605 (1004)
Q Consensus 528 ~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 605 (1004)
. ..|.-...|..+. +|.+..-++-+.++++-..+.- || ....|.......+.=+-..|..-...+.+.+-..
T Consensus 179 ~---dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 179 Q---DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred h---cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 5 5666666665443 4667777888888887776642 44 3444544444444333334444444444432111
Q ss_pred HHHHHHHHHHHHHc-----CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048751 606 CLTFSSVIAAYARL-----GQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLT 680 (1004)
Q Consensus 606 ~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 680 (1004)
-..+.-+++. .+-+.|++++-.+.+. .|. .--.|+--|.+++++.+|..+.+++.- ..|-.....
T Consensus 253 ----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilK 322 (557)
T KOG3785|consen 253 ----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILK 322 (557)
T ss_pred ----chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHH
Confidence 1223334443 3457788877766653 333 233455567888888888887766532 122222222
Q ss_pred HHHHHH-----HHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 048751 681 SLIKAY-----SKIGCLEGAKQVYEKMKEMEGGPDTV-ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL 754 (1004)
Q Consensus 681 ~li~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 754 (1004)
.+..+- .......-|.+.|+..-..+...|.. --..+...+.-.-++++.+.+++.+..-...|...-..++.+
T Consensus 323 gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQA 402 (557)
T KOG3785|consen 323 GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQA 402 (557)
T ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHH
Confidence 222221 11123445666666555544443332 234566666667778888888888877776666666678888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHH
Q 048751 755 YKTMGMLDEAIDAAEEMKLSGLLRDVISY-NQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 755 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
++..|++.+|.++|-++....+ .|..+| ..|.++|.+.++++-|++++-++
T Consensus 403 k~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 8888888888888877655333 344455 44566778888888877766544
No 72
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=6.3e-07 Score=98.49 Aligned_cols=412 Identities=15% Similarity=0.176 Sum_probs=194.2
Q ss_pred hhHHHHHHH--HHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-C-------C-CC
Q 048751 326 TSTYNTLID--LYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEES-R-------I-SP 394 (1004)
Q Consensus 326 ~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~-g-------~-~p 394 (1004)
..|-..+++ .|...|+.+.|.+-.+-++ +...|..|...|.+..++|-|.-.+-.|... | . .|
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 345555554 3556677777777665554 3355777777777777777776666655432 1 0 12
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHH
Q 048751 395 DTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMK 474 (1004)
Q Consensus 395 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 474 (1004)
+ .+-.-..-.....|.+++|..+|++-++. ..|=..|-..|++++|.++-+.=.+-. -..||.....
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAK 866 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHH
Confidence 1 12222223344567777777777776652 223333445677777777655322211 1245555555
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhH
Q 048751 475 MYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDK 554 (1004)
Q Consensus 475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 554 (1004)
-+-..++.+.|++.|++..... ..+...| .....+++.|-+ ...|...|.-....+-..|+.+.
T Consensus 867 ~Lear~Di~~AleyyEK~~~ha---fev~rmL-------~e~p~~~e~Yv~------~~~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHA---FEVFRML-------KEYPKQIEQYVR------RKRDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChH---HHHHHHH-------HhChHHHHHHHH------hccchHHHHHHHHHHhcccchHH
Confidence 5666677777777776542100 0000000 000011111100 11122222223333344555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 048751 555 AFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRR 634 (1004)
Q Consensus 555 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 634 (1004)
|+.+|..... |.++++..|-.|+.++|-++-++ .-|.....-|.+.|-..|++.+|..+|-+...
T Consensus 931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 6555554433 34455555556666666555443 12444444556666666666666666655432
Q ss_pred cC--C----CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----
Q 048751 635 AG--V----EPNEVVYGSLINGFAATG--KVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEK----- 701 (1004)
Q Consensus 635 ~g--~----~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----- 701 (1004)
.. + ..| .-..|.+.....| +.-.|-.+|++. |.. +...+..|-++|.+.+|+++.=+
T Consensus 996 fsnAIRlcKEnd--~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~ 1065 (1416)
T KOG3617|consen 996 FSNAIRLCKEND--MKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFS 1065 (1416)
T ss_pred HHHHHHHHHhcC--HHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccH
Confidence 10 0 000 0001111111111 122223333322 111 12233345566666665554211
Q ss_pred ---HH--hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCC
Q 048751 702 ---MK--EMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK-LSG 775 (1004)
Q Consensus 702 ---~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 775 (1004)
++ ......|+...+.-.+.++...++++|..++-...+. ..-+. +|+..+..-..++-+.|- .++
T Consensus 1066 aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~--------~~Alq-lC~~~nv~vtee~aE~mTp~Kd 1136 (1416)
T KOG3617|consen 1066 ALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF--------SGALQ-LCKNRNVRVTEEFAELMTPTKD 1136 (1416)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------HHHHH-HHhcCCCchhHHHHHhcCcCcC
Confidence 11 1233446666777777777777777777776655442 11122 222222222223333332 111
Q ss_pred CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 776 LLRD----VISYNQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 776 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
-.|+ ......+...|.++|.+..|-+-|.+.
T Consensus 1137 ~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1137 DMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred CCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 1233 234566677788888887777666554
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=3.6e-08 Score=104.96 Aligned_cols=449 Identities=12% Similarity=0.076 Sum_probs=241.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048751 332 LIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGN 411 (1004)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 411 (1004)
=++.+.+.|++++|.+..++++..+ +-|...+..-+-++.+.++|++|+.+.+.-.... .-+...|. -..+..+.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~fE-KAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFFE-KAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhHH-HHHHHHHccc
Confidence 3577888999999999999998876 3355667777778889999999996665432110 01111111 2333447899
Q ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHH-HHhcCCHHHHHHHH
Q 048751 412 INAALRYYWKIREVGLFPDS-VTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKM-YINEGLLHQAKIIF 489 (1004)
Q Consensus 412 ~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~-~~~~g~~~~A~~~~ 489 (1004)
.++|+..++ |+.++. .+...-.+.+.+.|++++|+.+|+.+.+++..- +..-+.+ +...+....+. +.
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd----~d~~~r~nl~a~~a~l~~~-~~ 164 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD----QDEERRANLLAVAAALQVQ-LL 164 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHhhhHH-HH
Confidence 999999888 344443 466677788889999999999999998875431 1111111 11111111111 23
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhc-----CCCCC---HH-----HHHHHHHHHHcCCChhHHH
Q 048751 490 KKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLV-----GQKKS---VV-----EYNVMIKAYGKSKLYDKAF 556 (1004)
Q Consensus 490 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~---~~-----~~~~li~~~~~~g~~~~A~ 556 (1004)
+........+-..+...+-.+...|++.+|++++....+.. ....+ .. .--.|.-.+...|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 33333333455666777888889999999999998873211 01111 11 1122334466789999999
Q ss_pred HHHHHHHHCCCCCCHHHH----HHHHHHHHcCCChHH--HHHHHHHHHh-----------CCCCCCHHHHHHHHHHHHHc
Q 048751 557 SLFKVMKNLGTWPDECTY----NSLVQMFAGGDLMGQ--AVDLLAEMQG-----------AGFKPQCLTFSSVIAAYARL 619 (1004)
Q Consensus 557 ~l~~~m~~~g~~p~~~t~----~~ll~~~~~~~~~~~--a~~~~~~m~~-----------~g~~~~~~~~~~li~~~~~~ 619 (1004)
.++...++..+ +|.... |.|+.. ..-.++-. ++..++.... ..-......-+.++..|.
T Consensus 245 ~iy~~~i~~~~-~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t-- 320 (652)
T KOG2376|consen 245 SIYVDIIKRNP-ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT-- 320 (652)
T ss_pred HHHHHHHHhcC-CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 99999888765 344222 223222 21111111 1111111110 000000001112222222
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHH-HHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048751 620 GQLSNAVDLFHEMRRAGVEPNEVVYGSLIN-GFA-ATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQ 697 (1004)
Q Consensus 620 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~-~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 697 (1004)
+..+.+.++...... ..|... +.+++. +.- +......|.+++...-+....-...+.-.++......|+++.|.+
T Consensus 321 nk~~q~r~~~a~lp~--~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 NKMDQVRELSASLPG--MSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred hhHHHHHHHHHhCCc--cCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 233334333333221 123322 222322 222 222456666666666554332234455556666677777877777
Q ss_pred HHH--------HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHH----HHHHHHHHHHhcCCHH
Q 048751 698 VYE--------KMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKG---QVDAV----SFAAMMYLYKTMGMLD 762 (1004)
Q Consensus 698 ~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~----~~~~l~~~~~~~g~~~ 762 (1004)
++. .+.+.+..|. +..++...+.+.++.+.|..++....... ..... .+..++..-.+.|+.+
T Consensus 398 il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 777 4444444333 33456666667666666666666654432 11111 2223333344557777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 763 EAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 763 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
+|..+++++.+.+. +|..+...++.+|++. +++.|..+-.
T Consensus 476 ea~s~leel~k~n~-~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 476 EASSLLEELVKFNP-NDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHHhCC-chHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 77777777776442 5566666666666653 4455554433
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.8e-08 Score=99.86 Aligned_cols=308 Identities=13% Similarity=0.041 Sum_probs=232.9
Q ss_pred CCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048751 637 VEPNEVVYGSLING--FAATGKVEEALQYFRMMREC-GLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVA 713 (1004)
Q Consensus 637 ~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 713 (1004)
++|+..+....+.+ .+..++...|...+-.+... -++-|......+.+.+...|+.++|+..|+.....++. +...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhh
Confidence 34444444444443 34456656666655544433 25567788899999999999999999999998764432 2222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048751 714 SNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATN 793 (1004)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 793 (1004)
.....-.+.+.|++++-..+...+..........|..-+..+...++++.|+.+-++.++.+. .+...|..-...+...
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhc
Confidence 333345567889999999999888877666666777777788889999999999999998542 3466777777888999
Q ss_pred CCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhh-HHHHH--HHHHhhhHhhhh
Q 048751 794 GQLRQCGELLHEMLTQKLL-PDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEA-IITSV--YSVVGLNALALG 869 (1004)
Q Consensus 794 g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~A~~ 869 (1004)
|++++|.-.|+..+. +. -+...|.-++..|...|+..||.-.-+..++..+...... ++++. +..-..-++|..
T Consensus 348 ~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHH
Confidence 999999999999864 45 4677999999999999999999998888888776655433 23222 223344567899
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCC
Q 048751 870 TCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKM 949 (1004)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 949 (1004)
++++.+... |.-..+.+.++..+...|+.++++.++++.+. ..||....+.|.+.+.....+++|...+..+. .+
T Consensus 426 f~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL--r~ 500 (564)
T KOG1174|consen 426 FAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL--RQ 500 (564)
T ss_pred HHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH--hc
Confidence 999998885 33556788899999999999999999999887 68999999999999999999999999888775 34
Q ss_pred CCcH
Q 048751 950 EPNE 953 (1004)
Q Consensus 950 ~p~~ 953 (1004)
+|..
T Consensus 501 dP~~ 504 (564)
T KOG1174|consen 501 DPKS 504 (564)
T ss_pred Cccc
Confidence 5654
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=2.7e-09 Score=123.69 Aligned_cols=213 Identities=14% Similarity=0.033 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048751 691 CLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEE 770 (1004)
Q Consensus 691 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 770 (1004)
++++|...++++.+.++. +..++..+..++...|++++|...|+++.+.+|.+..++..++.++...|++++|+..+++
T Consensus 319 ~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 319 AMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 356666666666665433 4555666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCch
Q 048751 771 MKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYA 849 (1004)
Q Consensus 771 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~ 849 (1004)
+.+.. |+ ...+..++..+...|++++|...++++.....+-+...+..+..++...|+.++|...+++.
T Consensus 398 Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~-------- 467 (553)
T PRK12370 398 CLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI-------- 467 (553)
T ss_pred HHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh--------
Confidence 66644 33 22222333345556666666666666554321112223344444444555555555444432
Q ss_pred hhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 048751 850 SEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ-GLEPDIVTCINLVGCY 928 (1004)
Q Consensus 850 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~l~~~~ 928 (1004)
... .+.+....+.+...|...| ++|...++++.+. +..|+...+..++ +
T Consensus 468 -------------------------~~~-~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~ 517 (553)
T PRK12370 468 -------------------------STQ-EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--L 517 (553)
T ss_pred -------------------------hhc-cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--H
Confidence 222 1223445555556666666 4666666666542 2334333333333 3
Q ss_pred HhcCChhHHHHHHHHHH
Q 048751 929 GKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 929 ~~~g~~~~A~~~~~~~~ 945 (1004)
.-.|+.+.+..+ +++.
T Consensus 518 ~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 518 VAHGEAIAEKMW-NKFK 533 (553)
T ss_pred HHHhhhHHHHHH-HHhh
Confidence 344555555555 5553
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=6.4e-10 Score=128.89 Aligned_cols=248 Identities=10% Similarity=-0.021 Sum_probs=164.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 048751 690 GCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL---------GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM 760 (1004)
Q Consensus 690 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 760 (1004)
+.+++|...+++..+..+. +...|..+..++... +++++|...++++.+.+|.+..++..++.++...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4567888888888776543 445566665554422 347788888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHcCCCcHHHHHHH
Q 048751 761 LDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNG-TFKVLFTILKKGGFPIEAVKQL 838 (1004)
Q Consensus 761 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~l 838 (1004)
+++|+..++++++.+ |+ ...+..+...+...|++++|...+++.++. .|+.. .+..+...+.
T Consensus 354 ~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~------------ 417 (553)
T PRK12370 354 YIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITY------------ 417 (553)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHH------------
Confidence 888888888888755 44 566777778888888888888888887654 33322 1112222222
Q ss_pred HhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 048751 839 QSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDI 918 (1004)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 918 (1004)
..|++++|++.++++++..+|.++..+..++.+|...|+.++|.+.+.++.. ..|+.
T Consensus 418 ---------------------~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~ 474 (553)
T PRK12370 418 ---------------------YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITG 474 (553)
T ss_pred ---------------------hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchh
Confidence 3345555666666666654455667788899999999999999999999865 35654
Q ss_pred H-HHHHHHHHHHhcCChhHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 048751 919 V-TCINLVGCYGKAGLVEGVKRIHSQLKY-GKMEPNENLFKAVIDAYRNANREDLADLACQEMRTA 982 (1004)
Q Consensus 919 ~-t~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 982 (1004)
. ....+...+...| +.|...++.+.. ....|....+ +-.+|.-.|+.+.+..+ +++...
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 4 4445555666767 477777766642 1222222222 33455556777777666 666654
No 77
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=1.5e-06 Score=95.69 Aligned_cols=267 Identities=17% Similarity=0.246 Sum_probs=150.9
Q ss_pred HHHHHhhhc--cCCChHHHHHHHH-----hhhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 123 IDNTLNSFC--ENLSPKEQTVVLK-----EQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEM 195 (1004)
Q Consensus 123 ~~~~l~~~~--~~~~~~~~~~~l~-----~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m 195 (1004)
+.+.|+.|. ..+++.....+|. ..|+-+.|.+..+.+++ -.+|..|.+++.+.++++-|.-++-.|
T Consensus 711 ~~~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm 783 (1416)
T KOG3617|consen 711 VAKPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHM 783 (1416)
T ss_pred hhhhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhh
Confidence 345566664 4466666666666 35788888877777664 457999999999999999988888777
Q ss_pred HhC-CC--------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhc
Q 048751 196 AKN-GV--------LPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWC 266 (1004)
Q Consensus 196 ~~~-~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 266 (1004)
... |. .|+ .+=-.........|..++|+.+|++-+.. ..|=..|...|.|++|.++-+.-
T Consensus 784 ~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~- 852 (1416)
T KOG3617|consen 784 KNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETK- 852 (1416)
T ss_pred hhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhc-
Confidence 642 11 121 22112222334678999999999988765 23445677889999999886531
Q ss_pred ccccccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHHH
Q 048751 267 LGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAA 346 (1004)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~ 346 (1004)
| . -.-..||..-..-+-..++.+.|+
T Consensus 853 ------D------------------------------------R------------iHLr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 853 ------D------------------------------------R------------IHLRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred ------c------------------------------------c------------eehhhhHHHHHHHHHhhccHHHHH
Confidence 0 0 011346766677777778888888
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048751 347 NVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVG 426 (1004)
Q Consensus 347 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 426 (1004)
+.|++.-- |--..+. |+. .+........+.+. |...|.-.....-..|+.+.|+.+|...++
T Consensus 879 eyyEK~~~----hafev~r-mL~-----e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 879 EYYEKAGV----HAFEVFR-MLK-----EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHHhcCC----hHHHHHH-HHH-----hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 88865321 1111111 111 11112222222222 223333333334445566666655554433
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHh
Q 048751 427 LFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKC 492 (1004)
Q Consensus 427 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 492 (1004)
|-++++..|-.|+.++|.++-++-- |..+-..+.+.|-..|++.+|..+|.++
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3445555555555555555544321 3333445555555555555555555444
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.4e-07 Score=100.49 Aligned_cols=423 Identities=15% Similarity=0.100 Sum_probs=250.2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 048751 323 PRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPD-TKTYNI 401 (1004)
Q Consensus 323 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ 401 (1004)
|++..++..-+-++.+.+++++|+.+.+.-... ..+.+-+---..+..+.+..++|+..++ |+.++ ..+...
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L 115 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLEL 115 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHH
Confidence 666777888888999999999999554322110 1111111122445568999999999998 33333 335666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCCCcH---HHHHHHHH
Q 048751 402 LLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILC-QRNMVQEAEAVIIEMEKCGLHIDEHSV---PGVMKMYI 477 (1004)
Q Consensus 402 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~l~~~~~ 477 (1004)
-...+.+.|++++|+++|+.+.+.+.. | +...+.+=+ ..+..-.+ ..+......| ..+| ......+.
T Consensus 116 ~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~----~~~q~v~~v~-e~syel~yN~Ac~~i 186 (652)
T KOG2376|consen 116 RAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQV----QLLQSVPEVP-EDSYELLYNTACILI 186 (652)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhH----HHHHhccCCC-cchHHHHHHHHHHHH
Confidence 667788999999999999999886542 2 222221111 11111111 1222222222 3344 34455667
Q ss_pred hcCCHHHHHHHHHHhhh--------cCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHH----H
Q 048751 478 NEGLLHQAKIIFKKCQL--------DGGLS-------SKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVV----E 538 (1004)
Q Consensus 478 ~~g~~~~A~~~~~~~~~--------~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~ 538 (1004)
..|++.+|+++++.... ++..+ ..+...++-++...|+.++|..++...... .++|.. .
T Consensus 187 ~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~--~~~D~~~~Av~ 264 (652)
T KOG2376|consen 187 ENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR--NPADEPSLAVA 264 (652)
T ss_pred hcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--cCCCchHHHHH
Confidence 78999999999988822 11111 125567788889999999999999888764 455542 3
Q ss_pred HHHHHHHHHcCCChh-HHHHHHHHHHHCC-----------CCCCHHHH-HHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 048751 539 YNVMIKAYGKSKLYD-KAFSLFKVMKNLG-----------TWPDECTY-NSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQ 605 (1004)
Q Consensus 539 ~~~li~~~~~~g~~~-~A~~l~~~m~~~g-----------~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 605 (1004)
-|.++..-....-.+ .++..++...... .+ ..+.. +.++..+ .+..+.+.++...... ..|.
T Consensus 265 ~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk-~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~ 339 (652)
T KOG2376|consen 265 VNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQK-QAIYRNNALLALF--TNKMDQVRELSASLPG--MSPE 339 (652)
T ss_pred hcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCch
Confidence 444443322222122 1222222221110 00 11111 2222222 3444555554443322 2344
Q ss_pred HHHHHHHHHHHH-HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCH
Q 048751 606 CLTFSSVIAAYA-RLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFR--------MMRECGLWANQ 676 (1004)
Q Consensus 606 ~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~~~~ 676 (1004)
...-+.+..++. +...+..|..++....+....-.....-.++......|+++.|++++. .+.+.+..|.
T Consensus 340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~- 418 (652)
T KOG2376|consen 340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG- 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh-
Confidence 333333333332 233577788888877765322224566667778889999999999999 5555554444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEG--GPD----TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAA 750 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 750 (1004)
+..++...+.+.++-+.|..++...+..-. .+. ..++..++..-.+.|+-++|..+++++.+.+|+|..+...
T Consensus 419 -~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~ 497 (652)
T KOG2376|consen 419 -TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQ 497 (652)
T ss_pred -HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHH
Confidence 455666677777777777777776543210 111 1233334444557799999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 048751 751 MMYLYKTMGMLDEAIDAAEEM 771 (1004)
Q Consensus 751 l~~~~~~~g~~~~A~~~~~~~ 771 (1004)
++.+|+.. +.+.|..+-..+
T Consensus 498 lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 498 LVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHhc-CHHHHHHHhhcC
Confidence 99999988 677777665544
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=3.7e-09 Score=109.07 Aligned_cols=200 Identities=16% Similarity=0.068 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 605 QCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIK 684 (1004)
Q Consensus 605 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 684 (1004)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+... .+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 34556667777777888888888888776653 33466777777778888888888888887776543 35566777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHH
Q 048751 685 AYSKIGCLEGAKQVYEKMKEMEG-GPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDE 763 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 763 (1004)
.+...|++++|.+.++....... ......+..+..++...|++++|...+++..+..|.+...+..++..+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 77888888888888888776432 22344566677788888888888888888888887778888888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 764 AIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 764 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
|...+++..+.. ..+...+..++..+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888888887752 2345666677777778888888888777664
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.27 E-value=1e-07 Score=106.24 Aligned_cols=264 Identities=12% Similarity=0.067 Sum_probs=159.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHH-HHHHHHHcc-----CCHHHHHHHHHHHHHCCCCCCHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFN-TMIYTCGSH-----GNLSEAEALFCMMEESRISPDTKTY 399 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~~~ 399 (1004)
..........+.+.|+.++|..+|..+++++ |+...|- .+..+.... .+.+...++++++...- |...+.
T Consensus 38 ~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~ 113 (517)
T PF12569_consen 38 LAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAP 113 (517)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccch
Confidence 4567778888999999999999999999885 5555554 444444222 25677788888887653 433333
Q ss_pred HHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC----------CC
Q 048751 400 NILLSLYADVGNIN-AALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKC----GL----------HI 464 (1004)
Q Consensus 400 ~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~----------~~ 464 (1004)
..+.-.+..-..+. .+..++..+...|++ .+++.|-..|......+-..+++...... +. .|
T Consensus 114 ~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p 190 (517)
T PF12569_consen 114 RRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPP 190 (517)
T ss_pred hHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCc
Confidence 22222222212232 344556666777753 34455555555444555555555555432 11 11
Q ss_pred CC--CcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHH
Q 048751 465 DE--HSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVM 542 (1004)
Q Consensus 465 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 542 (1004)
.. +++.-+.+.|...|++++|.+++++++...|..+..+..-+..|-..|++.+|...++..+.+ ...|-..=+..
T Consensus 191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--D~~DRyiNsK~ 268 (517)
T PF12569_consen 191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--DLADRYINSKC 268 (517)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--ChhhHHHHHHH
Confidence 11 244555666777788888888888877777777777777777777788887777777777664 55555555666
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHcCCChHHHHHHHHHHH
Q 048751 543 IKAYGKSKLYDKAFSLFKVMKNLGTWPDECT--------YNSLVQMFAGGDLMGQAVDLLAEMQ 598 (1004)
Q Consensus 543 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--------~~~ll~~~~~~~~~~~a~~~~~~m~ 598 (1004)
+..+.++|++++|.+++....+.+..|-... ..-...+|.+.|++..|++.|..+.
T Consensus 269 aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 269 AKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6777777777777777777766553222111 1223344555566555555544443
No 81
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=4.5e-10 Score=109.90 Aligned_cols=231 Identities=13% Similarity=0.081 Sum_probs=185.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 540 NVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARL 619 (1004)
Q Consensus 540 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 619 (1004)
+.|.++|.+.|.+.+|.+-|+.-.... |-+.||..|-+.|.+..+...|+.++.+-++. ++-++.....+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 567777788888888887777776643 55567777778888888888888888777764 344444445677778888
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048751 620 GQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVY 699 (1004)
Q Consensus 620 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 699 (1004)
++.++|.++|+...+.. +.++.....+...|.-.++++.|+.+++++.+.|+ -++..|+.+.-+|.-.++++.++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988763 45677777788888888999999999999999988 57788888888888899999999999
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 700 EKMKEMEGGPDT--VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 700 ~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
++....-..|+. .+|..+.......|++..|.+.|+-....++.+..+++.|+-.-.+.|++++|..++.......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 888765544443 4677788888888999999999999998888899999999999999999999999998887743
No 82
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=3.1e-09 Score=109.64 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMAC 789 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 789 (1004)
....+..+...+...|++++|...++++.+..|.+...+..++..+...|++++|++.+++..+... .+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 3456667777788888888888888888777777777888888888888888888888888877543 345667777777
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 048751 790 FATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~ 808 (1004)
+...|++++|...+++..+
T Consensus 109 ~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHcccHHHHHHHHHHHHh
Confidence 7888888888888887764
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=7.7e-09 Score=113.46 Aligned_cols=243 Identities=17% Similarity=0.185 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-C
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREK-------GQVDA-VSFAAMMYLYKTMGMLDEAIDAAEEMKLS-----GL-L 777 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~ 777 (1004)
.+...+...|...|+++.|+.+++...+. ..+.. ...+.++..|...+++++|+.+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555777888888888888888877665 12222 23445777888888888888888887642 21 1
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCChh-hHHHHHHHHHcCCCcHHHHHHHHhHhhccCCch
Q 048751 778 RD-VISYNQVMACFATNGQLRQCGELLHEMLTQ-----KL-LPDNG-TFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYA 849 (1004)
Q Consensus 778 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~~-~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~ 849 (1004)
|. ..+++.|..+|.+.|++++|..++++.++- +. .|... .+..+...+...++.++|..+++..+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al------- 352 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL------- 352 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH-------
Confidence 22 456777888888888888888888877431 11 11111 23344445556666666666665432
Q ss_pred hhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-HHHHH
Q 048751 850 SEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ-----G-LEPD-IVTCI 922 (1004)
Q Consensus 850 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~pd-~~t~~ 922 (1004)
+.+.+......+.-..+++.|+..|...|++++|.++|++++.. | ..+. ...++
T Consensus 353 -------------------~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 353 -------------------KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN 413 (508)
T ss_pred -------------------HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence 22222222211123457899999999999999999999998852 1 2332 45778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH----cC-CCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 923 NLVGCYGKAGLVEGVKRIHSQLK----YG-KMEPN-ENLFKAVIDAYRNANREDLADLACQEMR 980 (1004)
Q Consensus 923 ~l~~~~~~~g~~~~A~~~~~~~~----~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 980 (1004)
.|...|.+.+++++|.++|.+.. .. +..|+ ..+|..|+..|.+.|++|+|.++.+++.
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 88888989999988888886542 22 23345 4578999999999999999999988776
No 84
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.21 E-value=2.1e-07 Score=92.28 Aligned_cols=398 Identities=14% Similarity=0.112 Sum_probs=233.8
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHH-HHH
Q 048751 534 KSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTF-SSV 612 (1004)
Q Consensus 534 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~-~~l 612 (1004)
.++.-.--+.+.+...|++..|+..|....+.++. +..++..-...|...|+...|+.-+...++. +||-..- ..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 34444556788888888888888888888774321 2334444455677778888888878777764 5664332 223
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048751 613 IAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCL 692 (1004)
Q Consensus 613 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 692 (1004)
...+.+.|.++.|..-|+...+.. |+..+ ..+|.+-+....+ .......+..+...|+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~-------------~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGL-------------VLEAQSKLALIQE------HWVLVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcch-------------hHHHHHHHHhHHH------HHHHHHHHHHHhcCCch
Confidence 445677888888888888887753 43211 1111111111111 11223344455677899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
..|+.....+++..+ -|...+..-..+|...|++..|+.-+....+....+......+...+...|+.+.++...++.+
T Consensus 172 ~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999998888544 3777777888999999999999999988888888888898999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhh-
Q 048751 773 LSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASE- 851 (1004)
Q Consensus 773 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~- 851 (1004)
+. .||...+... |-+. .+..+.+..|.+ ....+++.++++..+..++..|.....
T Consensus 251 Kl--dpdHK~Cf~~---YKkl---kKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir 306 (504)
T KOG0624|consen 251 KL--DPDHKLCFPF---YKKL---KKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIR 306 (504)
T ss_pred cc--CcchhhHHHH---HHHH---HHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCccccee
Confidence 84 4775432111 1111 111111111110 111233333333444444433332111
Q ss_pred ----hHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 048751 852 ----AIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDI-VTCINLVG 926 (1004)
Q Consensus 852 ----~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~l~~ 926 (1004)
-++...+...+...+|++.+.+++... |.|+.++.--+.+|.-...+|+|+.-|+++.+ +.++. ..-..+
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e--~n~sn~~~reGl-- 381 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE--LNESNTRAREGL-- 381 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcccHHHHHHH--
Confidence 112223445556666777777777765 33677777777788888888888888888877 44432 222222
Q ss_pred HHHhcCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCchhhhhcccccc
Q 048751 927 CYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADLACQEMRTAFESPEHDDSEFEENSEESY 1001 (1004)
Q Consensus 927 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 1001 (1004)
+.|+++.++.-+. .-|..|+ -.+.-...+-.+.+++|..+--.-.|.+.+..--+|+++
T Consensus 382 --------e~Akrlkkqs~kR------DYYKILG--VkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKF 440 (504)
T KOG0624|consen 382 --------ERAKRLKKQSGKR------DYYKILG--VKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKF 440 (504)
T ss_pred --------HHHHHHHHHhccc------hHHHHhh--hcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhh
Confidence 3444443333111 1222221 123333455556666666555555555555555555544
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=8e-09 Score=109.31 Aligned_cols=233 Identities=12% Similarity=-0.041 Sum_probs=120.6
Q ss_pred CCHHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 655 GKVEEALQYFRMMRECGL-WAN--QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAE 731 (1004)
Q Consensus 655 g~~~~A~~~~~~m~~~g~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 731 (1004)
+..+.++.-+.+++.... .|+ ...|..+...+...|++++|...|++..+..+. +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 445556666665554321 111 233555555566666666666666666654432 4556666666666666666666
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048751 732 SMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKL 811 (1004)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 811 (1004)
..|++..+..|.+..+|..++.++...|++++|++.+++..+.. |+..........+...+++++|...+.+.... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~ 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-L 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-C
Confidence 66666666666666666666666666666666666666666543 33221111111223345566666666554322 1
Q ss_pred CCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHH
Q 048751 812 LPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIY 891 (1004)
Q Consensus 812 ~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 891 (1004)
.|+... .. ......|+..++ +.++.+.+. ++...+.. +....+|..++.
T Consensus 196 ~~~~~~-~~--~~~~~lg~~~~~-~~~~~~~~~--------------------------~~~~~~l~-~~~~ea~~~Lg~ 244 (296)
T PRK11189 196 DKEQWG-WN--IVEFYLGKISEE-TLMERLKAG--------------------------ATDNTELA-ERLCETYFYLAK 244 (296)
T ss_pred CccccH-HH--HHHHHccCCCHH-HHHHHHHhc--------------------------CCCcHHHH-HHHHHHHHHHHH
Confidence 121111 11 111122333222 111111110 01111111 224567999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 892 AFKSSGKNDKALNTFMKMLDQGLEPDIVTCIN 923 (1004)
Q Consensus 892 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 923 (1004)
.+.+.|++++|+..|++.++.+ .||.+-+..
T Consensus 245 ~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 245 YYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 9999999999999999998732 235544443
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.20 E-value=2.8e-07 Score=102.88 Aligned_cols=181 Identities=17% Similarity=0.202 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHH
Q 048751 554 KAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGA----G----------FKPQCL--TFSSVIAAYA 617 (1004)
Q Consensus 554 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g----------~~~~~~--~~~~li~~~~ 617 (1004)
.+...+..+...|++ .+++.+-..|.......-...++...... + -+|+.. ++.-+...|.
T Consensus 129 ~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 344555666677753 23445555555455555555555554321 1 134443 3355567777
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 618 RLGQLSNAVDLFHEMRRAGVEPN-EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAK 696 (1004)
Q Consensus 618 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 696 (1004)
..|++++|++++++..++ .|+ +..|..-.+.|-+.|++.+|.+.++.....+. .|...-+-.+..+.+.|++++|.
T Consensus 206 ~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~ 282 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAE 282 (517)
T ss_pred HhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHH
Confidence 888888888888888876 455 67788888888888888888888888888765 57777777888888888888888
Q ss_pred HHHHHHHhCCCCCCHH------HH--HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048751 697 QVYEKMKEMEGGPDTV------AS--NTMISLYAELGMVTEAESMFNDIREK 740 (1004)
Q Consensus 697 ~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (1004)
+++....+.+..|... .| ...+.+|.+.|++..|++.|..+.+.
T Consensus 283 ~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 283 KTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888887765433221 22 33456777888888888888777654
No 87
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=4.1e-09 Score=103.34 Aligned_cols=235 Identities=13% Similarity=0.032 Sum_probs=154.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
+.+..+|.+.|.+.+|.+.|+...+.. |-+.||..|.++|.+..+...|+.++.+-.+.- +.++.....+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 556677777777777777777666543 555566677777777777777777777666532 22443444556667777
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
++.++|.++|+...+..+.++.+..+++..|.-.++.+-|+.+++++++.|. -++..|+.+.-+|...++++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 7777777777777777777777777777777777777777777777777776 566677777777777777777766666
Q ss_pred HHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCch
Q 048751 805 EMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSF 884 (1004)
Q Consensus 805 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~ 884 (1004)
+.+...-.|+ +|.++|-. ++.+....|++..|.+.|+-.+..+ +.+..
T Consensus 383 RAlstat~~~------------------~aaDvWYN-------------lg~vaV~iGD~nlA~rcfrlaL~~d-~~h~e 430 (478)
T KOG1129|consen 383 RALSTATQPG------------------QAADVWYN-------------LGFVAVTIGDFNLAKRCFRLALTSD-AQHGE 430 (478)
T ss_pred HHHhhccCcc------------------hhhhhhhc-------------cceeEEeccchHHHHHHHHHHhccC-cchHH
Confidence 6654322222 12111110 1122345566666777777666665 34667
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048751 885 IYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD 917 (1004)
Q Consensus 885 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 917 (1004)
++|.|+..-.+.|+.++|..++..... +.|+
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKS--VMPD 461 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhh--hCcc
Confidence 888888888888888888888887765 4554
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=7.4e-09 Score=113.60 Aligned_cols=243 Identities=21% Similarity=0.230 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC-
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEM-----EG-GPDTV-ASNTMISLYAELGMVTEAESMFNDIREK-----GQV- 743 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~- 743 (1004)
.+...+...|...|+++.|..+++...+. |. .|... ..+.+...|...+++++|..+|+++... |+.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555777777777777777777766543 11 22332 2344667888888888888888887543 233
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC
Q 048751 744 --DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS-----GL-LRDV-ISYNQVMACFATNGQLRQCGELLHEMLTQ---KL 811 (1004)
Q Consensus 744 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 811 (1004)
-..+++.|..+|.+.|++++|...+++..+- |. .|+. ..++.++..+...+++++|..++++..+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 3346777888889999988888777766531 21 1332 34677778889999999999999877432 12
Q ss_pred CCC----hhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHH
Q 048751 812 LPD----NGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYN 887 (1004)
Q Consensus 812 ~p~----~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 887 (1004)
.++ ..++..+...|.+.|+..+|.+++++++.. .++.......-...++|
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~--------------------------~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI--------------------------LRELLGKKDYGVGKPLN 413 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH--------------------------HHhcccCcChhhhHHHH
Confidence 222 234555666666666666666655554332 11111111122345789
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH----CCC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 888 VAIYAFKSSGKNDKALNTFMKMLD----QGL-EPD-IVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 888 ~l~~~~~~~g~~~~A~~~~~~m~~----~g~-~pd-~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
.|+..|.+.+++++|.++|.+... .|. .|+ ..+|.+|...|.+.|+++.|+++.+.+.
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999999999999999988764 222 344 3489999999999999999999988764
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.17 E-value=2.3e-08 Score=94.19 Aligned_cols=207 Identities=13% Similarity=0.036 Sum_probs=154.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048751 714 SNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATN 793 (1004)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 793 (1004)
...|.-.|.+.|+...|.+-+++.++.+|.+..+|..++..|.+.|..+.|.+.|++.+.... .+..+.|.....+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhC
Confidence 445677888999999999999999999999999999999999999999999999999988542 3467888899999999
Q ss_pred CCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHH
Q 048751 794 GQLRQCGELLHEMLTQKL-LPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCE 872 (1004)
Q Consensus 794 g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~ 872 (1004)
|++++|...|++.+..-. ..-..++..+.-+..+.|+.+.|.+.+++.++..+.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~------------------------- 171 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ------------------------- 171 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-------------------------
Confidence 999999999999876522 223446666666666777777777666666554433
Q ss_pred HHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCc
Q 048751 873 TLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPN 952 (1004)
Q Consensus 873 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 952 (1004)
.+.+.-.+.......|++-.|..++++....|. ++...+-..+..-...|+.+.+.++-.++.. .-|.
T Consensus 172 ---------~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~ 239 (250)
T COG3063 172 ---------FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPY 239 (250)
T ss_pred ---------CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCC
Confidence 334455556666777888888888888776544 7777777777777778888888777766652 2455
Q ss_pred HHHHHH
Q 048751 953 ENLFKA 958 (1004)
Q Consensus 953 ~~~~~~ 958 (1004)
+.-|.+
T Consensus 240 s~e~q~ 245 (250)
T COG3063 240 SEEYQT 245 (250)
T ss_pred cHHHHh
Confidence 544443
No 90
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=5.5e-11 Score=87.14 Aligned_cols=50 Identities=44% Similarity=0.575 Sum_probs=39.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 048751 202 PTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKE 251 (1004)
Q Consensus 202 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 251 (1004)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777888888888888888888888888888888888888888877764
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.5e-07 Score=99.67 Aligned_cols=386 Identities=14% Similarity=0.098 Sum_probs=225.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-CCcHHHHHHHHHhcCC
Q 048751 403 LSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHID-EHSVPGVMKMYINEGL 481 (1004)
Q Consensus 403 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~ 481 (1004)
..+.+..|+++.|+.+|-+.+.... ++.+.|..-..+|...|++++|++=-.+-.+. .|+ +..|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 3556778999999999988887644 37788999999999999999988766665554 333 3567778888888899
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhh---hhhcCCCC-----CHHHHHHHHHHHHc-----
Q 048751 482 LHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGK---RDLVGQKK-----SVVEYNVMIKAYGK----- 548 (1004)
Q Consensus 482 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~-----~~~~~~~li~~~~~----- 548 (1004)
+++|+..|.+-+...+.+......+.+++..... +.+.|..- ....+.+. ....|..++..+-+
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~---~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYA---ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHH---hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 9999999999999999998888888888822111 11111100 00000000 00112222222211
Q ss_pred -----CCChhHHHHHHHHH-----HHCC-------CCC---------C-------------HHHHHHHHHHHHcCCChHH
Q 048751 549 -----SKLYDKAFSLFKVM-----KNLG-------TWP---------D-------------ECTYNSLVQMFAGGDLMGQ 589 (1004)
Q Consensus 549 -----~g~~~~A~~l~~~m-----~~~g-------~~p---------~-------------~~t~~~ll~~~~~~~~~~~ 589 (1004)
..++..|...+... ...| ..| . ..-...+..+..+..++..
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 11111111111100 0000 001 0 0112344455555566666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCCHHHHHH
Q 048751 590 AVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGS-------LINGFAATGKVEEALQ 662 (1004)
Q Consensus 590 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-------li~~~~~~g~~~~A~~ 662 (1004)
|.+-+....+.. .+..-++....+|...|.+......-....+.|- -...-|+. +..+|.+.++++.|+.
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 666666665543 3444455555666666666655555555444331 11122222 2234444556666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048751 663 YFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQ 742 (1004)
Q Consensus 663 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (1004)
.|.+....-..|+. ..+....+++....+...-.++.. ..-...-...+.+.|++..|...|.+++...|
T Consensus 320 ~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P 389 (539)
T KOG0548|consen 320 YYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP 389 (539)
T ss_pred HHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 66665443222221 112223334444333332222211 11122235677888999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 743 VDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 743 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
.|...|...+.+|.+.|.+..|++-.+..++.. |+ ...|..-..++....+++.|++.|++.++.
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999988888888753 55 556777777777888888888888888755
No 92
>PF13041 PPR_2: PPR repeat family
Probab=99.13 E-value=1.3e-10 Score=85.18 Aligned_cols=43 Identities=47% Similarity=0.737 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 048751 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYT 370 (1004)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 370 (1004)
+||+||++|++.|++++|.++|++|.+.|+.||..||+.||++
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=1.4e-07 Score=91.61 Aligned_cols=318 Identities=13% Similarity=0.094 Sum_probs=175.8
Q ss_pred CCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHH-HH
Q 048751 465 DEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNV-MI 543 (1004)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-li 543 (1004)
...-+..++..+.+..++.+|++++....+..+.+......|+.+|....++..|...++++.. ..|...-|.. -.
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~A 85 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQA 85 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHH
Confidence 3334555666666677777777777776666676777777777888888888888877777654 3333333321 23
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048751 544 KAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQM--FAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQ 621 (1004)
Q Consensus 544 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 621 (1004)
..+.+.+.+.+|+.+...|... |+...-..-+.+ ....+++..+..++++.... -+..+.+.......+.|+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeecccc
Confidence 4566777888888888777653 222222222222 23567777777777665532 233444445555667888
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHHcCCHHHHHH
Q 048751 622 LSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTS----LIKAYSKIGCLEGAKQ 697 (1004)
Q Consensus 622 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~ 697 (1004)
++.|++-|+...+.+--.....|+.-+. ..+.|+++.|+++..+++++|++-.+..-.- .+++-. .|+ -..
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgN---t~~ 234 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGN---TLV 234 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccc---hHH
Confidence 8888888888777543334556665444 3456788888888888887775432211000 000000 000 000
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 698 VYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKG--QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
+... --+..+|.-...+.+.|+++.|.+.+..|.-+. ..|+.+...++-.-. .+++-+..+-+.-++..+
T Consensus 235 lh~S-------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 235 LHQS-------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN 306 (459)
T ss_pred HHHH-------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC
Confidence 0000 011233444445566677777776666665443 235555544433222 223333333344444433
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 776 LLRDVISYNQVMACFATNGQLRQCGELLHE 805 (1004)
Q Consensus 776 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 805 (1004)
+ -...|+..++-.||+..-++-|-+++.+
T Consensus 307 P-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 307 P-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred C-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 3 2245666666667777666666666654
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=5.6e-08 Score=102.90 Aligned_cols=223 Identities=10% Similarity=-0.053 Sum_probs=156.2
Q ss_pred HHHcCCHhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048751 616 YARLGQLSNAVDLFHEMRRAG-VEPN--EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCL 692 (1004)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 692 (1004)
....+..+.++.-+.++.... ..|+ ...|..+...|...|+.++|...|+...+..+ .+...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCH
Confidence 334567788888888887532 1222 46688888899999999999999999998754 4678999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
++|...++...+..+. +..+|..++.++...|++++|.+.|++..+..|.++.. ......+...++.++|+..+++..
T Consensus 115 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR-ALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999999986654 56778889999999999999999999999999888731 122223456778999999997766
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CC----C-ChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccC
Q 048751 773 LSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQK-LL----P-DNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVK 846 (1004)
Q Consensus 773 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~----p-~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 846 (1004)
... .|+...+ .......|+..++ +.+..+.+.. .. | ....|..+...+.+.|+.++|+..++.++...+
T Consensus 193 ~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 EKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 432 2332222 2233345665544 3455554321 11 1 123455566666666666666666666655443
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=9.3e-07 Score=93.75 Aligned_cols=436 Identities=17% Similarity=0.084 Sum_probs=257.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHH
Q 048751 438 LHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWA 517 (1004)
Q Consensus 438 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 517 (1004)
-++.+..|+++.|+..|.+.+..... |...|..-..+|...|++++|.+=-.+.....|..+..|...+..+.-.|+++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 34567789999999999998877655 77778888888999999999998888888888888899999999999999999
Q ss_pred HHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHcCCChHHHHH
Q 048751 518 EAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLV-----QMFAGGDLMGQAVD 592 (1004)
Q Consensus 518 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-----~~~~~~~~~~~a~~ 592 (1004)
+|+..|.+-++. .+.+...++.+..++ ..+.+. +... -++..+..+. +.+.....+. .
T Consensus 88 eA~~ay~~GL~~--d~~n~~L~~gl~~a~----~~~~~~-----~~~~---~~p~~~~~l~~~p~t~~~~~~~~~~---~ 150 (539)
T KOG0548|consen 88 EAILAYSEGLEK--DPSNKQLKTGLAQAY----LEDYAA-----DQLF---TKPYFHEKLANLPLTNYSLSDPAYV---K 150 (539)
T ss_pred HHHHHHHHHhhc--CCchHHHHHhHHHhh----hHHHHh-----hhhc---cCcHHHHHhhcChhhhhhhccHHHH---H
Confidence 999998887763 455566666666666 111111 1110 1111121111 1111111111 1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH-----HHHc-------CCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 593 LLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHE-----MRRA-------GVEPNEVVYGSLINGFAATGKVEEA 660 (1004)
Q Consensus 593 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A 660 (1004)
++..... .|+. +..|..-..+..|.-.+.. +... +..|. .......-..++..+-
T Consensus 151 ~l~~~~~---~p~~------l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~d~~ee 217 (539)
T KOG0548|consen 151 ILEIIQK---NPTS------LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC----KQEHNGFPIIEDNTEE 217 (539)
T ss_pred HHHHhhc---CcHh------hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc----cccCCCCCccchhHHH
Confidence 1111111 1111 1111110011111111110 0000 11111 0000000000000000
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048751 661 LQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREK 740 (1004)
Q Consensus 661 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (1004)
.+ ...-..-...+.++.-+..+++.|++-+....+.. -+..-++....+|...|.+.+.........+.
T Consensus 218 ~~---------~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~ 286 (539)
T KOG0548|consen 218 RR---------VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV 286 (539)
T ss_pred HH---------HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH
Confidence 00 00011224456667777778888888888877755 35556677777888888888888888777777
Q ss_pred CCCCHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 048751 741 GQVDAVSF-------AAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLP 813 (1004)
Q Consensus 741 ~~~~~~~~-------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 813 (1004)
+.....-| ..++.+|.+.++++.|+..|.+.+.....|+..+ +....+++........- +.|
T Consensus 287 gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~--~~p 355 (539)
T KOG0548|consen 287 GRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAY--INP 355 (539)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh--hCh
Confidence 64333323 2345567778889999999988776544333221 22334444444443321 233
Q ss_pred Chh-hHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhh-hHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHH
Q 048751 814 DNG-TFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASE-AIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIY 891 (1004)
Q Consensus 814 ~~~-~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~-~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 891 (1004)
... -...-...+.+.|++..|+..|.+++...|.+... ...+..|.+++.+..|++.+++.++.+ |.....|.-=+.
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGA 434 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHH
Confidence 322 22333556778899999999999988888776653 334556888999999999999999886 345667777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHH
Q 048751 892 AFKSSGKNDKALNTFMKMLDQGLEPDIVTCI-NLVGCYG 929 (1004)
Q Consensus 892 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-~l~~~~~ 929 (1004)
++....+|++|++.|++.++ ..|+..-+. .+.++..
T Consensus 435 al~~mk~ydkAleay~eale--~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALE--LDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHH
Confidence 88888899999999999887 467544333 3444433
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=3.7e-07 Score=88.74 Aligned_cols=244 Identities=13% Similarity=0.093 Sum_probs=127.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHH--HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048751 334 DLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIY--TCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGN 411 (1004)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 411 (1004)
..+.+++.+.+|+.+...|... |+...-..-+. .....+++..+..+.++....| +..+.+.......+.|+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc
Confidence 3445556666666666555432 22211111111 1234566666666666654322 33344444455556677
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCc----HHHHHHHHHhcCCHHHHHH
Q 048751 412 INAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHS----VPGVMKMYINEGLLHQAKI 487 (1004)
Q Consensus 412 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~----~~~l~~~~~~~g~~~~A~~ 487 (1004)
++.|++-|+...+.+--.....|+..+ +..+.|+++.|++...++++.|++-.+.. ....+.. ..+..-..
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv----rsvgNt~~ 234 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV----RSVGNTLV 234 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch----hcccchHH
Confidence 777777776666543333344555433 33456666777777777766665432211 0101100 00000001
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 048751 488 IFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGT 567 (1004)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 567 (1004)
+.... -..+++.-...+.+.|+++.|.+.+..|.-......|+++...+.-. --.+++.+..+-+.-+...++
T Consensus 235 lh~Sa------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 235 LHQSA------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred HHHHH------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC
Confidence 11100 12345556667778888888888877765444445566665554322 123445555555555555554
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 048751 568 WPDECTYNSLVQMFAGGDLMGQAVDLLAE 596 (1004)
Q Consensus 568 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 596 (1004)
. ...||..++-.||++.-++.|..++.+
T Consensus 308 f-P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 308 F-PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred C-ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 3 456788888888888888888887765
No 97
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.06 E-value=1.6e-07 Score=88.61 Aligned_cols=206 Identities=13% Similarity=0.017 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 608 TFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYS 687 (1004)
Q Consensus 608 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 687 (1004)
+...|.-+|...|+...|..-+++.++.+ +-+..+|..+...|.+.|..+.|.+.|+....... -+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 34456677888999999999999888864 34477888888899999999999999998887653 35567888888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 688 KIGCLEGAKQVYEKMKEMEGGP-DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAID 766 (1004)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 766 (1004)
..|++++|...|++......-+ ...+|..+.-+..+.|+.+.|...|++..+..|..+.+...+.....+.|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 9999999999999888754432 334777788888888999999999999999998888888999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhH
Q 048751 767 AAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTF 818 (1004)
Q Consensus 767 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 818 (1004)
.++.....+. ++..+....|+.--..|+.+.+.++=.++... .|...-+
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 9988887766 78888777788888888888877766666542 4544433
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=2.6e-06 Score=94.13 Aligned_cols=306 Identities=12% Similarity=-0.013 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRRAGV-EPNE-VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLI 683 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 683 (1004)
...|..+...+...|+.+.+...+....+... .++. .........+...|++++|.++++...+..+ .+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-h
Confidence 34555666666667777777666666544321 1121 2222234455677888899888888877532 33334332 2
Q ss_pred HHHH----HcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048751 684 KAYS----KIGCLEGAKQVYEKMKEMEGGPD-TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 684 ~~~~----~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
..+. ..+..+.+.+.+... ....|+ ......+...+...|++++|...+++..+..|.+...+..++.++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 2222 234555555555441 122233 344456677888999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCC-CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCChhhH-H--HHHHHHHcCCCc
Q 048751 759 GMLDEAIDAAEEMKLSGLL-RD--VISYNQVMACFATNGQLRQCGELLHEMLTQKL-LPDNGTF-K--VLFTILKKGGFP 831 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~~~~~-p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~ 831 (1004)
|++++|+..+++....... |+ ...|..+...+...|++++|..++++...... .+..... . .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 9999999999998875321 23 23566788889999999999999999853321 1111111 1 111122222222
Q ss_pred HHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhc-cCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048751 832 IEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEA-YLDSFIYNVAIYAFKSSGKNDKALNTFMKML 910 (1004)
Q Consensus 832 ~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 910 (1004)
..+..+ +.... ......+ ........+.+.++...|+.++|..+++.+.
T Consensus 242 ~~~~~w-~~~~~-----------------------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 242 DVGDRW-EDLAD-----------------------------YAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALK 291 (355)
T ss_pred ChHHHH-HHHHH-----------------------------HHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 111111 11000 0000000 0111222356778888999999999999887
Q ss_pred HCCCC-------C-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 911 DQGLE-------P-DIVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 911 ~~g~~-------p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
..... . ..........++...|+.++|.+.+....
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 292 GRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 63211 1 22333444556678899998888887654
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.97 E-value=1.3e-06 Score=86.78 Aligned_cols=296 Identities=13% Similarity=0.041 Sum_probs=169.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHH-HHHHHHHHcCCC
Q 048751 473 MKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEY-NVMIKAYGKSKL 551 (1004)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~ 551 (1004)
...+...|.+.+|+..|..++..+|.+-.++..-+..|...|+...|+.-+.++.+ .+||-..- -.-...+.+.|.
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhhccc
Confidence 33444445555555555555555555555555555555555555555555554444 34443221 111223445555
Q ss_pred hhHHHHHHHHHHHCCCCCCH--------------HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048751 552 YDKAFSLFKVMKNLGTWPDE--------------CTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYA 617 (1004)
Q Consensus 552 ~~~A~~l~~~m~~~g~~p~~--------------~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 617 (1004)
+++|..-|+..++....-+. ......+..+...|+...|+.....+++.. +.|...|..-..+|.
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHH
Confidence 55555555555544321000 111233444556677777777777777753 567777777777888
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHH---------HH
Q 048751 618 RLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIV----LTSL---------IK 684 (1004)
Q Consensus 618 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~----~~~l---------i~ 684 (1004)
..|++..|+.-++...+.. ..+..++-.+-..+...|+.+.++...++..+.+ ||... |..| +.
T Consensus 201 ~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred hcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHH
Confidence 8888888877776665542 3345555556666777777777777777777643 44321 1111 11
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH
Q 048751 685 AYSKIGCLEGAKQVYEKMKEMEGGPDTV---ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML 761 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 761 (1004)
.....++|.++++..+...+..+..... .+..+-.++...|++.+|++...++.+..|.|..++..-+.+|.-...|
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 2244566666666666666554432222 2334455666667777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHCC
Q 048751 762 DEAIDAAEEMKLSG 775 (1004)
Q Consensus 762 ~~A~~~~~~~~~~~ 775 (1004)
++|+.-|+...+.+
T Consensus 358 D~AI~dye~A~e~n 371 (504)
T KOG0624|consen 358 DDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHhcC
Confidence 77777777776643
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=5.2e-06 Score=91.75 Aligned_cols=205 Identities=11% Similarity=-0.003 Sum_probs=114.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHH-HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 048751 497 GLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVV-EYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYN 575 (1004)
Q Consensus 497 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 575 (1004)
|.....+..++..+...|+.+++...+...........+.. ........+...|++++|..++++..+..+. +...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHH
Confidence 34455566666666666766666666555444322222221 1222233455677788888877777665322 222333
Q ss_pred H---HHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048751 576 S---LVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFA 652 (1004)
Q Consensus 576 ~---ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 652 (1004)
. ........+....+.+.+.. .....+........+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 82 LHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred HhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 1 11111123444444444443 111112223344455566777778888888887777653 334566677777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048751 653 ATGKVEEALQYFRMMRECGLW-ANQ--IVLTSLIKAYSKIGCLEGAKQVYEKMKE 704 (1004)
Q Consensus 653 ~~g~~~~A~~~~~~m~~~g~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~ 704 (1004)
..|++++|+.+++........ ++. ..|..+...+...|++++|..++++...
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 778888888777777654321 222 2344566677777777777777777654
No 101
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.94 E-value=0.00025 Score=80.34 Aligned_cols=221 Identities=16% Similarity=0.162 Sum_probs=141.2
Q ss_pred hhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 048751 146 QKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRAL--GRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEA 223 (1004)
Q Consensus 146 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 223 (1004)
.+++..|+.-.+.+.++.+-.+ |..++.+| .|.|+.++|..+++.....+.. |..|..++..+|...|+.++|
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 3567778777777766533232 34444444 5789999999888887766533 888999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhHHHHhcCC
Q 048751 224 LLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGG 303 (1004)
Q Consensus 224 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1004)
..+|++..+. .|+..-...+..+|++.+.+.+-.+.-- +++|.-
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~---------------------------------~LyK~~- 140 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAAL---------------------------------QLYKNF- 140 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHhC-
Confidence 9999999876 7787778888889998876654333221 112211
Q ss_pred CCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcC----------ChHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHH
Q 048751 304 RNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAG----------RLQDAANVFAEMLKSG-VAVDTITFNTMIYTCG 372 (1004)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~ 372 (1004)
|.++..+-+++..+.+.- -..-|.+.++.+.+.+ -.-+..-...-+..+.
T Consensus 141 -------------------pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~ 201 (932)
T KOG2053|consen 141 -------------------PKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILE 201 (932)
T ss_pred -------------------CcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHH
Confidence 222222222333322211 1234556666666653 1112222222233445
Q ss_pred ccCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048751 373 SHGNLSEAEALFC-MMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVG 426 (1004)
Q Consensus 373 ~~g~~~~A~~l~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 426 (1004)
..|++++|.+++. ...+.-..-+...-+--+..+...+++.+-.++-.++...|
T Consensus 202 ~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 202 LQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred hcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 6788999999984 44443333344555667788888899999999888888876
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=1.3e-07 Score=101.04 Aligned_cols=258 Identities=16% Similarity=0.174 Sum_probs=156.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 687 SKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAID 766 (1004)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 766 (1004)
.+.|++.+|.-.|+..++.++. +..+|..|.......++-..|+..+++..+..|.+..+...|+-.|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 4455555555555555554433 445555555555555555555555555555555555555555555665555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccC
Q 048751 767 AAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVK 846 (1004)
Q Consensus 767 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 846 (1004)
+++.-+...+ | |..+..+ ...+++.. .+-.++...+..+. ++|-++....+
T Consensus 375 ~L~~Wi~~~p-~----y~~l~~a-~~~~~~~~----------~~s~~~~~~l~~i~-------------~~fLeaa~~~~ 425 (579)
T KOG1125|consen 375 MLDKWIRNKP-K----YVHLVSA-GENEDFEN----------TKSFLDSSHLAHIQ-------------ELFLEAARQLP 425 (579)
T ss_pred HHHHHHHhCc-c----chhcccc-CccccccC----------CcCCCCHHHHHHHH-------------HHHHHHHHhCC
Confidence 5555544221 0 0000000 00000000 00112222222222 22222222222
Q ss_pred --Cchh-hhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHH
Q 048751 847 --PYAS-EAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD-IVTCI 922 (1004)
Q Consensus 847 --~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~ 922 (1004)
.++. ...++-+|...|.+++|+.+|+.++... |.|...||-|+..++...+.++|+..|.++++ +.|+ +...-
T Consensus 426 ~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~Ry 502 (579)
T KOG1125|consen 426 TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRY 502 (579)
T ss_pred CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeeh
Confidence 2222 4567778888899999999999998886 55899999999999999999999999999998 7997 44777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH---cC----CCC--CcHHHHHHHHHHHHhcCChhHHHHHHH
Q 048751 923 NLVGCYGKAGLVEGVKRIHSQLK---YG----KME--PNENLFKAVIDAYRNANREDLADLACQ 977 (1004)
Q Consensus 923 ~l~~~~~~~g~~~~A~~~~~~~~---~~----~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~ 977 (1004)
.|.-+|...|.+++|.+.+-.+. .. .-. ++..+|.+|-.++.-.++.|.+..+..
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 88889999999998888875443 21 111 234699999989988898886655543
No 103
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.86 E-value=0.00029 Score=79.77 Aligned_cols=161 Identities=16% Similarity=0.080 Sum_probs=93.9
Q ss_pred HHHHHHHcCCCc---HHHHHHHHhHhhccCCchhh-hHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHh
Q 048751 820 VLFTILKKGGFP---IEAVKQLQSSYQEVKPYASE-AIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKS 895 (1004)
Q Consensus 820 ~l~~~~~~~g~~---~~A~~~l~~~~~~~~~~~~~-~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 895 (1004)
.+++.+.+.++. -+|+-+++..+...+...-. ..+..+|...|-...|.+.|+.+--+....|...|. +..-+..
T Consensus 441 ~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t 519 (932)
T KOG2053|consen 441 HLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAET 519 (932)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHh
Confidence 444555555543 35666666666665554443 333456777788888888888776665555555443 2345566
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHH---HHHHcCCCCCcHHHHHHHHHHHHhcCChhH
Q 048751 896 SGKNDKALNTFMKMLDQGLEPD-IVTCINLVGCYGKAGLVEGVKRIH---SQLKYGKMEPNENLFKAVIDAYRNANREDL 971 (1004)
Q Consensus 896 ~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l~~~~~~~g~~~~A~~~~---~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 971 (1004)
.|++..|...++..... +.-+ ..+-..+.- ..+.|.+.+..++. +++..........+-+..++.+...++.++
T Consensus 520 ~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~-AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q 597 (932)
T KOG2053|consen 520 SGRSSFASNTFNEHLKF-YDSSLKETPEYIAL-AYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQ 597 (932)
T ss_pred cccchhHHHHHHHHHHH-HhhhhhhhHHHHHH-HHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 78888888877776652 1111 122233332 34667776665554 333221111223556677888888898888
Q ss_pred HHHHHHHHHhhc
Q 048751 972 ADLACQEMRTAF 983 (1004)
Q Consensus 972 A~~~~~~m~~~~ 983 (1004)
=...+..|...|
T Consensus 598 ~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 598 LLKLLESMKLPP 609 (932)
T ss_pred HHHHHhccccCc
Confidence 888888887433
No 104
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.85 E-value=0.0003 Score=75.04 Aligned_cols=439 Identities=12% Similarity=0.127 Sum_probs=244.3
Q ss_pred CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 048751 319 SVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKT 398 (1004)
Q Consensus 319 ~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 398 (1004)
....|.|..+|+.||+-+... .++++.+.++++... ++-....|..-|....+..+++..+++|.+.+..- .+...
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDL 88 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDL 88 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhH
Confidence 455689999999999988777 999999999999864 22345677888888889999999999999988763 35666
Q ss_pred HHHHHHHHHhc-CCHHH----HHHHHHHHH-HcCCCCCH-HHHHHHHHHHH---HcC------CHHHHHHHHHHHHhCCC
Q 048751 399 YNILLSLYADV-GNINA----ALRYYWKIR-EVGLFPDS-VTQRAILHILC---QRN------MVQEAEAVIIEMEKCGL 462 (1004)
Q Consensus 399 ~~~li~~~~~~-g~~~~----A~~~~~~m~-~~g~~p~~-~~~~~li~~~~---~~g------~~~~A~~~~~~m~~~g~ 462 (1004)
|...++.--+. |+... -.+.|+-.. +.|+.+-. ..|+..+.-+- ..| +.+...++++++.....
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 66666543322 23222 223333333 33433322 23444443221 122 23333344444432211
Q ss_pred CCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHH
Q 048751 463 HIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVM 542 (1004)
Q Consensus 463 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 542 (1004)
. .+..+=+-| ..++..+... +...+ .--+...+..|.++++++ ..+
T Consensus 169 ~----nlEkLW~DY---~~fE~~IN~~------------tarK~--i~e~s~~Ym~AR~~~qel-------------~~l 214 (656)
T KOG1914|consen 169 H----NLEKLWKDY---EAFEQEINII------------TARKF--IGERSPEYMNARRVYQEL-------------QNL 214 (656)
T ss_pred c----cHHHHHHHH---HHHHHHHHHH------------HHHHH--HHhhCHHHHHHHHHHHHH-------------HHH
Confidence 0 000000000 0011110000 00000 000112233344444332 223
Q ss_pred HHHHHcC-------CChhH--HHHHHHHHHH---C-CCC-CCHHHHHHHHHHHHcCCChHHHHHHHHH-HHhCCCCCCHH
Q 048751 543 IKAYGKS-------KLYDK--AFSLFKVMKN---L-GTW-PDECTYNSLVQMFAGGDLMGQAVDLLAE-MQGAGFKPQCL 607 (1004)
Q Consensus 543 i~~~~~~-------g~~~~--A~~l~~~m~~---~-g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~-m~~~g~~~~~~ 607 (1004)
+.++.+. |--++ +++++....+ . ++. -+..... ....-.++. |+-.+..|+..
T Consensus 215 t~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~------------~Rv~yayeQ~ll~l~~~peiW 282 (656)
T KOG1914|consen 215 TRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLT------------RRVMYAYEQCLLYLGYHPEIW 282 (656)
T ss_pred HhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHH------------HHHHHHHHHHHHHHhcCHHHH
Confidence 3333221 11111 1122211111 1 111 0000000 000011111 11112222221
Q ss_pred HH-----HHHHHHHHHcCC-------HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCC
Q 048751 608 TF-----SSVIAAYARLGQ-------LSNAVDLFHEMRRAGVEPNEVVYGSLINGFAAT---GKVEEALQYFRMMRECGL 672 (1004)
Q Consensus 608 ~~-----~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~ 672 (1004)
.. ...-+.+.+.|+ .+++..+++.....-..-+..+|..+..-=... .+.+...++++++...-.
T Consensus 283 y~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~ 362 (656)
T KOG1914|consen 283 YDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIED 362 (656)
T ss_pred HHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhc
Confidence 11 011123334444 344555555544322222334444333221111 135566667776654322
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 048751 673 WANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGP-DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAM 751 (1004)
Q Consensus 673 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 751 (1004)
.--..+|..+++.-.+..-++.|..+|.++.+.+..+ ++.++++++.-||. ++.+-|.++|+.-.+..+.++......
T Consensus 363 ~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~Y 441 (656)
T KOG1914|consen 363 IDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKY 441 (656)
T ss_pred cCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHH
Confidence 2233578888888888899999999999999988877 77788888887765 789999999999999989999988999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 752 MYLYKTMGMLDEAIDAAEEMKLSGLLRD--VISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 752 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+.-+...++-..|..+|++.+..++.+| ...|..++..=..-|+..-++++-+++..
T Consensus 442 ldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 442 LDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999999999866666 57899999988999999999998888754
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=8.2e-07 Score=94.99 Aligned_cols=218 Identities=13% Similarity=0.065 Sum_probs=138.9
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 583 GGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQ 662 (1004)
Q Consensus 583 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 662 (1004)
+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+.+ +-|......|.-.|...|.-..|+.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHH
Confidence 3344444444444444432 3344455555555555555555555555555542 2234555555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHH---------HHHHHcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048751 663 YFRMMRECGLWANQIVLTSLI---------KAYSKIGCLEGAKQVYEKM-KEMEGGPDTVASNTMISLYAELGMVTEAES 732 (1004)
Q Consensus 663 ~~~~m~~~g~~~~~~~~~~li---------~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 732 (1004)
+++..+...++ . .|.... ..+.....+....++|-++ ...+..+|..+...|.-.|.-.|++++|..
T Consensus 375 ~L~~Wi~~~p~--y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 375 MLDKWIRNKPK--Y-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHhCcc--c-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 55555432210 0 000000 0111111233344444444 344445788888899999999999999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 733 MFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
.|+.++...|.|...||.|+..+....+.++|+..|.++++ ++|+ +.+...|.-.|...|.+++|...|-+.+
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 5687 4566667788999999999999888764
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.74 E-value=3.3e-05 Score=97.09 Aligned_cols=338 Identities=12% Similarity=-0.048 Sum_probs=176.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 503 LAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFA 582 (1004)
Q Consensus 503 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 582 (1004)
....+..+...|++.+|........+. ..-..............|+++.+..++..+.......+..........+.
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 344456677778888777665543220 00001111222334556777777776665421111111112223334445
Q ss_pred cCCChHHHHHHHHHHHhCC--C----CCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 048751 583 GGDLMGQAVDLLAEMQGAG--F----KPQC--LTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNE----VVYGSLING 650 (1004)
Q Consensus 583 ~~~~~~~a~~~~~~m~~~g--~----~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~ 650 (1004)
..|+++++..++....+.- . .+.. .....+...+...|++++|...+++....-...+. ...+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 6788888888887765421 0 1111 11222334455678888888888877653111121 234555666
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHH
Q 048751 651 FAATGKVEEALQYFRMMREC----GL-WANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEM----EGG--P-DTVASNTMI 718 (1004)
Q Consensus 651 ~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~ 718 (1004)
+...|++++|...+++.... |. .....++..+...+...|++++|...+++.... +.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 77788888888888776532 11 011234455566677788888888877765442 111 1 122344555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHH
Q 048751 719 SLYAELGMVTEAESMFNDIREKG----QV-DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL-RDVISY-----NQVM 787 (1004)
Q Consensus 719 ~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~-----~~l~ 787 (1004)
..+...|++++|...+++..... +. ....+..+...+...|++++|...++++...... .....+ ...+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 66667788888888877765532 11 2334555666777788888888777776542100 111111 1112
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCChh---hHHHHHHHHHcCCCcHHHHHHHHhHhh
Q 048751 788 ACFATNGQLRQCGELLHEMLTQKLLPDNG---TFKVLFTILKKGGFPIEAVKQLQSSYQ 843 (1004)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~l~~~~~ 843 (1004)
..+...|+.+.|..++............. ....+..++...|+.++|...++++..
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33445677777777766543211111100 122344445555666666655555443
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.73 E-value=2.7e-05 Score=97.83 Aligned_cols=157 Identities=9% Similarity=-0.030 Sum_probs=70.4
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-----C----HHHHHHHHHHHH
Q 048751 441 LCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGL-----S----SKTLAAIIDVYA 511 (1004)
Q Consensus 441 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~----~~~~~~l~~~~~ 511 (1004)
+...|+++.+...+..+.......++.........+...|+++++...+......... + ......++..+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3345666665555554421111122333334444555666777776666655321110 1 112223344455
Q ss_pred hcCCHHHHHHHHhhhhhhcCCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC---C--CHHHHHHHHHHHH
Q 048751 512 EKGLWAEAETVFYGKRDLVGQKKS----VVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTW---P--DECTYNSLVQMFA 582 (1004)
Q Consensus 512 ~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p--~~~t~~~ll~~~~ 582 (1004)
..|++++|...+++..... ...+ ...++.+...+...|++++|...+.+....... + ...++..+...+.
T Consensus 464 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 5666666666665554321 1111 122344444455566666666665555432100 0 1122333344445
Q ss_pred cCCChHHHHHHHHHHH
Q 048751 583 GGDLMGQAVDLLAEMQ 598 (1004)
Q Consensus 583 ~~~~~~~a~~~~~~m~ 598 (1004)
..|+++.|...+++..
T Consensus 543 ~~G~~~~A~~~~~~al 558 (903)
T PRK04841 543 AQGFLQAAYETQEKAF 558 (903)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555555443
No 108
>PLN02789 farnesyltranstransferase
Probab=98.73 E-value=7.4e-06 Score=86.43 Aligned_cols=225 Identities=10% Similarity=0.085 Sum_probs=126.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH--HHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELG-MVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML--DEAI 765 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~ 765 (1004)
.++.++|+.+..++++..+. +..+|+.-..++...| .+++++..++++.+.+|.+..+|+....++.+.|+. ++++
T Consensus 50 ~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 34556666666666654332 3334555555555555 456777777777777777766776666666666652 5566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhcc
Q 048751 766 DAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEV 845 (1004)
Q Consensus 766 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 845 (1004)
.+++++++... .|..+|+....++...|+++++++.+.++++.+... ...+.....++.+.|....
T Consensus 129 ~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N-~sAW~~R~~vl~~~~~l~~------------ 194 (320)
T PLN02789 129 EFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN-NSAWNQRYFVITRSPLLGG------------ 194 (320)
T ss_pred HHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc-hhHHHHHHHHHHhcccccc------------
Confidence 66666666442 346666666666666677777777777776554332 2222222222222211000
Q ss_pred CCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCC-CHHH
Q 048751 846 KPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSS----GKNDKALNTFMKMLDQGLEP-DIVT 920 (1004)
Q Consensus 846 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~g~~p-d~~t 920 (1004)
.....++.++...+++... |.|..+|+.+...+... ++..+|.+.+.+..+ ..| ++..
T Consensus 195 --------------~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~a 257 (320)
T PLN02789 195 --------------LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFA 257 (320)
T ss_pred --------------ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHH
Confidence 0000123444555555554 44677777777777663 344567777777655 344 4556
Q ss_pred HHHHHHHHHhcC------------------ChhHHHHHHHHHH
Q 048751 921 CINLVGCYGKAG------------------LVEGVKRIHSQLK 945 (1004)
Q Consensus 921 ~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 945 (1004)
+..|++.++... ..++|.++++.+.
T Consensus 258 l~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 258 LSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 777777776532 2367888888773
No 109
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=7.9e-06 Score=86.21 Aligned_cols=223 Identities=14% Similarity=0.150 Sum_probs=155.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG-MLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQ 795 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 795 (1004)
+-..+...++.++|+.+.+++++..|.+..+|+....++...| ++++++..++++.+.+. .+..+|+.-...+.+.|+
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCc
Confidence 3344556678889999999999999999999998888888888 57899999999888653 345567766555555554
Q ss_pred H--HHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHH
Q 048751 796 L--RQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCET 873 (1004)
Q Consensus 796 ~--~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~ 873 (1004)
. ++++.+++++++... -+...+. ..+.++...|+++++++.+++
T Consensus 122 ~~~~~el~~~~kal~~dp-kNy~AW~---------------------------------~R~w~l~~l~~~~eeL~~~~~ 167 (320)
T PLN02789 122 DAANKELEFTRKILSLDA-KNYHAWS---------------------------------HRQWVLRTLGGWEDELEYCHQ 167 (320)
T ss_pred hhhHHHHHHHHHHHHhCc-ccHHHHH---------------------------------HHHHHHHHhhhHHHHHHHHHH
Confidence 2 455555555543311 1111222 223445556677788888888
Q ss_pred HHhhhccCCchhHHHHHHHHHhc---CCh----HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc----CChhHHHHHH
Q 048751 874 LIKAEAYLDSFIYNVAIYAFKSS---GKN----DKALNTFMKMLDQGLEP-DIVTCINLVGCYGKA----GLVEGVKRIH 941 (1004)
Q Consensus 874 ~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~----g~~~~A~~~~ 941 (1004)
+++.++ .|..+|+....++.+. |.. ++++++..+++. ..| |...|..+...+... ++..+|.+++
T Consensus 168 ~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 168 LLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 888874 4788999998887765 323 578888878877 577 678899888888873 3456788888
Q ss_pred HHHHcCCCCCc-HHHHHHHHHHHHhcC------------------ChhHHHHHHHHH
Q 048751 942 SQLKYGKMEPN-ENLFKAVIDAYRNAN------------------REDLADLACQEM 979 (1004)
Q Consensus 942 ~~~~~~~~~p~-~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m 979 (1004)
..+.. ..|+ +.....|+++|.... ..++|.++++.|
T Consensus 245 ~~~~~--~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 245 LEVLS--KDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHhhc--ccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 87654 4565 557788999997642 236788888877
No 110
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.69 E-value=8.2e-07 Score=92.40 Aligned_cols=223 Identities=16% Similarity=0.165 Sum_probs=134.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 048751 538 EYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKP-QCLTFSSVIAAY 616 (1004)
Q Consensus 538 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~ 616 (1004)
...-+.+++...|+++.++ .++.... .|.......+...+...++-+.+..-+.......... +..........+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3444556666677665433 2332222 4555555555444444344444444444433332222 222222223445
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCH
Q 048751 617 ARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSK----IGCL 692 (1004)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~ 692 (1004)
...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++.. .+++
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhH
Confidence 5678888887777542 356666677788888888888888888887643 33 344455555432 2357
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML-DEAIDAAEEM 771 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 771 (1004)
.+|..+|+++.+ ...+++.+.+.++.+....|++++|.+++.+..+.+|.++.+...++.+....|+. +.+.+++.++
T Consensus 184 ~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 184 QDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 888888888765 34567778888888888888888888888888877788888888888888888877 5666777777
Q ss_pred HHC
Q 048751 772 KLS 774 (1004)
Q Consensus 772 ~~~ 774 (1004)
...
T Consensus 263 ~~~ 265 (290)
T PF04733_consen 263 KQS 265 (290)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=1.3e-06 Score=95.75 Aligned_cols=222 Identities=13% Similarity=0.073 Sum_probs=138.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 603 KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSL 682 (1004)
Q Consensus 603 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 682 (1004)
+|--..-..+...+...|-...|..+|++.. .|...+.+|+..|+..+|..+..+..+. +|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3444444455666666677777777776554 3555666677777777777666666652 3666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHH
Q 048751 683 IKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLD 762 (1004)
Q Consensus 683 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 762 (1004)
.+......-+++|.++.+.... .+-..+.....+.++++++.+.|+...+.+|....+|..+..+..+.++++
T Consensus 464 GDv~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 6666555556666666654322 122223333334567777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhH
Q 048751 763 EAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSS 841 (1004)
Q Consensus 763 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 841 (1004)
.|.+.|..... ..|| ...||.+-.+|.+.|+..+|...+.+..+.+ .-+...+........+-|..++|.+.+++.
T Consensus 537 ~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 537 AAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 77777777665 3355 4567777777777777777777777776665 444444444555556667777777766666
Q ss_pred hhcc
Q 048751 842 YQEV 845 (1004)
Q Consensus 842 ~~~~ 845 (1004)
....
T Consensus 614 l~~~ 617 (777)
T KOG1128|consen 614 LDLR 617 (777)
T ss_pred HHhh
Confidence 6543
No 112
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.66 E-value=7.7e-07 Score=92.62 Aligned_cols=223 Identities=17% Similarity=0.151 Sum_probs=116.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 048751 609 FSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWA-NQIVLTSLIKAYS 687 (1004)
Q Consensus 609 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~ 687 (1004)
...+.+++...|+++.++ .++.... .|.......+...+...++-+.++.-+++.......+ +..........+.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 344555666666655433 2332222 4554444444433333234444444443333222221 2222222223445
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc--CCHHHHH
Q 048751 688 KIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM--GMLDEAI 765 (1004)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~ 765 (1004)
..|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.+..++.+..+-.+..... +.+.+|.
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHH
Confidence 567777777666532 24555556667777777777777777777766544444433333322223 3577788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcH-HHHHHHHhHhh
Q 048751 766 DAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPI-EAVKQLQSSYQ 843 (1004)
Q Consensus 766 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~l~~~~~ 843 (1004)
.+|+++.+. +.+++.+.+.+..++...|++++|.+++.+....+ +-+..++..++.+....|+.. .+.+++.+...
T Consensus 188 y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 188 YIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 888886654 34667777777777888888888888877765432 334556666666666677663 34444444433
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=8e-06 Score=89.87 Aligned_cols=216 Identities=14% Similarity=0.112 Sum_probs=179.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048751 573 TYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFA 652 (1004)
Q Consensus 573 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 652 (1004)
.-..+...+...|-...|..++++... |..+|.+|+..|+..+|..+..+..++ +|+...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 335566777888999999999988653 677899999999999999999888874 789999999998888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048751 653 ATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAES 732 (1004)
Q Consensus 653 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 732 (1004)
...-+++|.++.+..... .-..+.......++++++.+.++.-.+... ....+|-.+..+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHH
Confidence 777789999988876442 112222223447899999999998777554 366788888888999999999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 733 MFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
.|.......|.+..+|+++..+|.+.|+-.+|...+.+..+.+ ..+...|...+-.....|.+++|++.++++.+
T Consensus 541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999977 46666777777778899999999999999954
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.56 E-value=0.0023 Score=68.60 Aligned_cols=212 Identities=12% Similarity=0.099 Sum_probs=145.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 048751 552 YDKAFSLFKVMKNLGTWPDECTYNSLVQMFA---GGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDL 628 (1004)
Q Consensus 552 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 628 (1004)
.+++..+++.....-..-+..+|..+...-- +.+..+....++++++..-...-..+|..+++.-.+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3556666665544322234445554443222 2224666777777776643333335677888888888889999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 048751 629 FHEMRRAGVEP-NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEG 707 (1004)
Q Consensus 629 ~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 707 (1004)
|.+..+.+..+ ++..+++++.-||. ++..-|.++|+.=... ..-++.--...++-+...++-..|..+|++....+.
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999887777 78888999988875 6778899999865443 213344445667778888999999999999998755
Q ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 048751 708 GPD--TVASNTMISLYAELGMVTEAESMFNDIREKGQVDA----VSFAAMMYLYKTMGMLDEAI 765 (1004)
Q Consensus 708 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~ 765 (1004)
.++ ..+|..+++--..-|+...+.++-++.....+.+. ..-..+++.|.-.+.+.--.
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccH
Confidence 444 46899999999999999999999888877665221 23344556666666554333
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.55 E-value=8e-06 Score=84.01 Aligned_cols=100 Identities=17% Similarity=0.101 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDA---VSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV--ISYN 784 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~ 784 (1004)
....+..++..+.+.|++++|...|+++....|.++ .++..++.++...|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344555566666667777777777777666665543 35566666777777777777777777664321111 1344
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHC
Q 048751 785 QVMACFATN--------GQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 785 ~l~~~~~~~--------g~~~~A~~~~~~~~~~ 809 (1004)
.+..++... |++++|...++++.+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 444444433 5566666666666543
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.55 E-value=9.2e-08 Score=62.55 Aligned_cols=32 Identities=41% Similarity=0.581 Sum_probs=21.5
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 199 GVLPTNNTYGMLVDVYGKAGLIKEALLWIKHM 230 (1004)
Q Consensus 199 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 230 (1004)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666666
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=9.2e-05 Score=78.37 Aligned_cols=157 Identities=12% Similarity=0.028 Sum_probs=116.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 048751 674 ANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMY 753 (1004)
Q Consensus 674 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 753 (1004)
|+...+...+.+......-..+..++.+..+ .-....+....-.+...|.+++|+..++.+....|.|+..+.....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~ 348 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGD 348 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4555555555544433333333333333222 1223334445556678899999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcH
Q 048751 754 LYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPI 832 (1004)
Q Consensus 754 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 832 (1004)
.+.+.++.++|.+.++++.... |+ ...+..+..++.+.|++.+|+.+++..... .+.|+..|..|..+|...|+..
T Consensus 349 i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 349 ILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchH
Confidence 9999999999999999999854 66 667788889999999999999999998654 5677888999999999888777
Q ss_pred HHHH
Q 048751 833 EAVK 836 (1004)
Q Consensus 833 ~A~~ 836 (1004)
+|..
T Consensus 426 ~a~~ 429 (484)
T COG4783 426 EALL 429 (484)
T ss_pred HHHH
Confidence 7654
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.53 E-value=4.2e-05 Score=89.91 Aligned_cols=204 Identities=10% Similarity=0.050 Sum_probs=124.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhC-CC---CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048751 573 TYNSLVQMFAGGDLMGQAVDLLAEMQGA-GF---KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLI 648 (1004)
Q Consensus 573 t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 648 (1004)
.|-..+......++.+.|+++.++++.. ++ .--...|.++++.-..-|.-+...++|+++.+. .--...|..|.
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLL 1537 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHH
Confidence 4444555555555666666666555532 11 011234556666656666666666777776653 11234566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCH
Q 048751 649 NGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGG-PDTVASNTMISLYAELGMV 727 (1004)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 727 (1004)
..|.+.+++++|.++++.|.+. ..-...+|..++..+.+..+-+.|..++.++.+.-++ .........+..-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 7777777777777777777654 2245566777777777777777777777766553322 1233444555566667777
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048751 728 TEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD 779 (1004)
Q Consensus 728 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 779 (1004)
+.++.+|+......|.-...|+..+..-.++|+.+.+..+|+++...++.|.
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 7777777777777676777777777777777777777777777776665443
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=2.1e-05 Score=80.85 Aligned_cols=185 Identities=9% Similarity=-0.017 Sum_probs=96.2
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--H
Q 048751 604 PQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN-E---VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQ--I 677 (1004)
Q Consensus 604 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~ 677 (1004)
.....+..+...+...|+++.|...|+++.... |+ . ..+..+..++...|++++|+..++.+.+....... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 344556666666777777777777777766542 32 1 35566666777777777777777777654321111 1
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 048751 678 VLTSLIKAYSKI--------GCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFA 749 (1004)
Q Consensus 678 ~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 749 (1004)
++..+..++... |+.++|.+.++.+.+..+. +...+..+..... ..... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~~-------------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNRL-------------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHHH-------------HHHHH
Confidence 333333444332 4455555555555543322 1111111111000 00000 00112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 750 AMMYLYKTMGMLDEAIDAAEEMKLSGL-LR-DVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 750 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
.++..|.+.|++++|+..+++..+... .| ....+..++.++...|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445566667777777777777665431 12 135666667777777777777776666643
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.47 E-value=2.7e-05 Score=75.73 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=126.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
..+-..+...|+-+....+....... ...|......++....+.|++..|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 56667777778877777777765543 22455666678888888999999999998888754 45888899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
|+.++|..-|.+..+..+.++..++.|+..|.-.|+++.|..++......+. -|..+-..+.......|++++|.++..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9999999999999998888888899999999999999999999888887553 366667777778888889888887765
Q ss_pred HH
Q 048751 805 EM 806 (1004)
Q Consensus 805 ~~ 806 (1004)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 54
No 121
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=1.9e-07 Score=61.08 Aligned_cols=32 Identities=38% Similarity=0.497 Sum_probs=14.9
Q ss_pred CCCcCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 048751 356 GVAVDTITFNTMIYTCGSHGNLSEAEALFCMM 387 (1004)
Q Consensus 356 g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m 387 (1004)
|+.||..|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 122
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.46 E-value=9e-05 Score=87.22 Aligned_cols=209 Identities=11% Similarity=0.055 Sum_probs=175.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048751 603 KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN-----EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQI 677 (1004)
Q Consensus 603 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 677 (1004)
+-+...|-..|.-....++.+.|.++.++.... +.+. ...|.++++.-..-|.-+...++|+++.+.. -...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 445667888888899999999999999998764 2222 3567888887777788888999999998852 2345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQV--DAVSFAAMMYLY 755 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~ 755 (1004)
+|..|...|.+.+++++|.++++.|.+. +.....+|..+++.+.+.++-+.|..++.++.+.-|. ......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 7889999999999999999999999984 3467889999999999999999999999999988765 666777888899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh
Q 048751 756 KTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNG 816 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 816 (1004)
.+.|+.+.+..+|+..+...+ .-...|+.+++.=.++|+.+.+..+|++.+..++.|...
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 999999999999999998542 346789999999999999999999999999988877543
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.43 E-value=4e-05 Score=75.29 Aligned_cols=150 Identities=11% Similarity=0.091 Sum_probs=104.1
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048751 613 IAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCL 692 (1004)
Q Consensus 613 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 692 (1004)
+..|...|+++.+....+.+.. |. ..+...++.++++..++...+... .+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCH
Confidence 3456777777765444322221 11 012235566777777777766543 5677788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLY-AELGM--VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAE 769 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 769 (1004)
++|...+++..+..+. +...+..+..++ ...|+ .++|.+++++..+.+|.+..++..++..+...|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888776654 666677777653 56666 4888888888888888888888888888888888888888888
Q ss_pred HHHHCCC
Q 048751 770 EMKLSGL 776 (1004)
Q Consensus 770 ~~~~~~~ 776 (1004)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 8877543
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.43 E-value=4.2e-05 Score=75.18 Aligned_cols=156 Identities=10% Similarity=0.047 Sum_probs=110.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 048751 648 INGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMV 727 (1004)
Q Consensus 648 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 727 (1004)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+..+. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3467778887776444322221 10 0112255667777777777765543 777888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 728 TEAESMFNDIREKGQVDAVSFAAMMYLY-KTMGM--LDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 728 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
++|...|++..+..|.+...+..++.++ ...|+ .++|..++++..+.+. .+..++..+...+...|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888888888888888888864 66676 4888888888888653 346778888888888888888888888
Q ss_pred HHHHCCCCCChhhH
Q 048751 805 EMLTQKLLPDNGTF 818 (1004)
Q Consensus 805 ~~~~~~~~p~~~~~ 818 (1004)
++++. .+|+...+
T Consensus 169 ~aL~l-~~~~~~r~ 181 (198)
T PRK10370 169 KVLDL-NSPRVNRT 181 (198)
T ss_pred HHHhh-CCCCccHH
Confidence 88764 34444333
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.43 E-value=9.1e-05 Score=86.97 Aligned_cols=238 Identities=12% Similarity=0.083 Sum_probs=133.9
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 604 PQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNE-VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSL 682 (1004)
Q Consensus 604 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 682 (1004)
.+...+..|+..|...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+++..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 34456677777777777777777777765554 4543 3333333355555554444333 22
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHH
Q 048751 683 IKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLD 762 (1004)
Q Consensus 683 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 762 (1004)
+.......++.-+..++..+...+ -+..++..++.+|-+.|+.++|..+++++.+.+|.|+.+.+.++..|... +++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 233333334433333444444322 23346667778888888888888888888888888888888888888887 888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHcCCCcHHHHHHHHhH
Q 048751 763 EAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPD-NGTFKVLFTILKKGGFPIEAVKQLQSS 841 (1004)
Q Consensus 763 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~l~~~ 841 (1004)
+|+.++.++... +...+++.++.++|.++... .|+ ...+..+.......-....+..++...
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 888877777652 45556777777777777654 222 222222222222221122222222221
Q ss_pred hhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHH
Q 048751 842 YQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFK 894 (1004)
Q Consensus 842 ~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 894 (1004)
. .-|...+++++++.+++.+++..+. |..+..-++.+|.
T Consensus 230 ~-------------~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 Y-------------EPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred H-------------HHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 1 1234445566666666666666533 5555555665554
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.41 E-value=9.5e-05 Score=86.82 Aligned_cols=236 Identities=11% Similarity=0.089 Sum_probs=145.7
Q ss_pred CcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHH
Q 048751 467 HSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAY 546 (1004)
Q Consensus 467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 546 (1004)
..+..++..+...+++++|.++.+......|.....+..++..+.+.++..++..+ .++...
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------~~l~~~ 93 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL------------------NLIDSF 93 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh------------------hhhhhc
Confidence 34455555666666666666666666666666666666666677776665555443 233334
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 048751 547 GKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAV 626 (1004)
Q Consensus 547 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 626 (1004)
....++.-...+...|...+ -+...+..+..+|-+.|+.+++..+|+++++.. +-++.+.|.+...|... ++++|+
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 44444433333444444432 244567777788888888888888888888766 56677778888888777 888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Q 048751 627 DLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEM- 705 (1004)
Q Consensus 627 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 705 (1004)
.++.+.... |...+++..+.++|.++....+ -+...+..+. +.+...
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~----------------~ki~~~~ 217 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIE----------------RKVLGHR 217 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHH----------------HHHHhhh
Confidence 887776643 5556677777777777776532 1222222221 222111
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048751 706 EGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYK 756 (1004)
Q Consensus 706 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 756 (1004)
+..--..++.-+-..|....+|+++..+++.+.+..+.|..+...++.+|.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 112233344455566777777888888888888877777777777777766
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.37 E-value=6.9e-05 Score=72.97 Aligned_cols=161 Identities=15% Similarity=0.142 Sum_probs=131.5
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048751 610 SSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKI 689 (1004)
Q Consensus 610 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 689 (1004)
..+-..+...|+-+....+....... .+-|......++....+.|++..|+..+++...... +|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 55666777788888887777775543 234556666788888999999999999999987643 7888999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048751 690 GCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAE 769 (1004)
Q Consensus 690 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 769 (1004)
|++++|..-|.+..+..+. ++...+.+.-.|.-.|+.+.|..++.......+.|..+-..+.......|++++|.++..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9999999999998886654 666777788888888999999999999998888899999999999999999999988776
Q ss_pred HHHH
Q 048751 770 EMKL 773 (1004)
Q Consensus 770 ~~~~ 773 (1004)
.-..
T Consensus 227 ~e~~ 230 (257)
T COG5010 227 QELL 230 (257)
T ss_pred cccc
Confidence 6543
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.37 E-value=0.00015 Score=84.53 Aligned_cols=132 Identities=11% Similarity=0.083 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048751 640 NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMIS 719 (1004)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (1004)
+...+..|.....+.|.+++|..+++...+..+ -+......++..+.+.+++++|...+++.....+. +......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 344445555555555555555555555554321 12333444444555555555555555555443332 3344444445
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 720 LYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
++.+.|++++|..+|+++...+|.+..++..++.++...|+.++|...|++..+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555554444555555555555555555555555555544
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00019 Score=69.75 Aligned_cols=171 Identities=19% Similarity=0.212 Sum_probs=102.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048751 593 LLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGL 672 (1004)
Q Consensus 593 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 672 (1004)
+.+.+.......+......-...|+..|++++|++..+... +......=+..+.+..+++.|.+.++.|.+-
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 33444443333333333333455777777887777766521 3333333344556667777777777777764
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 048751 673 WANQIVLTSLIKAYSK----IGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSF 748 (1004)
Q Consensus 673 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 748 (1004)
.+..|.+.|..++.+ .+++.+|.-+|++|.+ ...|+..+.+..+.++...|++++|..+++....+.+.++.+.
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 355666666666643 3456777777777765 3456777777777777777777777777777777777777766
Q ss_pred HHHHHHHHhcCCHHHH-HHHHHHHHH
Q 048751 749 AAMMYLYKTMGMLDEA-IDAAEEMKL 773 (1004)
Q Consensus 749 ~~l~~~~~~~g~~~~A-~~~~~~~~~ 773 (1004)
..++-+-...|.-.++ .+.+.+++.
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 6666655555554333 344444444
No 130
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.35 E-value=0.0012 Score=67.56 Aligned_cols=307 Identities=18% Similarity=0.144 Sum_probs=171.7
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhCCCCCCHHH--HHH
Q 048751 643 VYGSLINGFAA--TGKVEEALQYFRMMRECGLWANQIVLTSLIKAY--SKIGCLEGAKQVYEKMKEMEGGPDTVA--SNT 716 (1004)
Q Consensus 643 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~ 716 (1004)
.|..|-.++.. .|+-..|.++-.+..+. +..|..-+..++.+- .-.|+++.|.+-|+.|.. .|.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHH
Confidence 35555555543 35555565555544322 233444444444332 345666777777766665 122211 112
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHHc
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG-LLRDVI--SYNQVMACFATN 793 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~--~~~~l~~~~~~~ 793 (1004)
|.-.-.+.|..+.|..+-+...+.-|.-.-.+...+...+..|+|+.|+++.+.-++.. +.++.. .-..|+.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~- 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM- 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH-
Confidence 22222345666666666666666655555666666666666666666666665544321 222221 11111111100
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHH-HHHHHHHhhhHhhhhHHH
Q 048751 794 GQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAII-TSVYSVVGLNALALGTCE 872 (1004)
Q Consensus 794 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~~~A~~~~~ 872 (1004)
-.-.-++..|.+.-.+..+..+......+. ...+...|+..++-.+++
T Consensus 239 -------------------------------s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 239 -------------------------------SLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred -------------------------------HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 000122344444444555445554443333 345666667777777777
Q ss_pred HHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCC
Q 048751 873 TLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ-GLEPD-IVTCINLVGCYGKAGLVEGVKRIHSQLKYGKME 950 (1004)
Q Consensus 873 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~pd-~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 950 (1004)
.+.+..+-|+ . ...|....-.|.+++-+++..+. .++|| ......+..+-...|++..|..-.+.+. ...
T Consensus 288 ~aWK~ePHP~--i----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~--r~~ 359 (531)
T COG3898 288 TAWKAEPHPD--I----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA--REA 359 (531)
T ss_pred HHHhcCCChH--H----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh--hhC
Confidence 7777643332 2 23444444444555555555542 46774 6677788888888899988877776664 457
Q ss_pred CcHHHHHHHHHHHHhc-CChhHHHHHHHHHHhhcCCCCCCchhh
Q 048751 951 PNENLFKAVIDAYRNA-NREDLADLACQEMRTAFESPEHDDSEF 993 (1004)
Q Consensus 951 p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~ 993 (1004)
|....|..|.++=... |+..+++..+.+-...|.+|.-..|..
T Consensus 360 pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~adg~ 403 (531)
T COG3898 360 PRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWTADGV 403 (531)
T ss_pred chhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcccccCc
Confidence 8889998888887665 999999998888888888877766643
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.35 E-value=0.00015 Score=84.64 Aligned_cols=135 Identities=10% Similarity=0.055 Sum_probs=122.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 048751 672 LWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAM 751 (1004)
Q Consensus 672 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 751 (1004)
...+...+..|.....+.|.+++|..+++.+.+..+. +......++.++.+.+++++|+..+++.....|.+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 4456888999999999999999999999999986544 556777889999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 752 MYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 752 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
+.++.+.|++++|+.+|+++...+ |+ ..++..+..++-..|+.++|...|++..+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999844 55 789999999999999999999999999765
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00062 Score=66.30 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=89.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT- 757 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 757 (1004)
...-...|+..|++++|.+...... +......=+..+.+..+++-|++.+++|.+.. +..+.+.|+.++.+
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~l 182 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKL 182 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHH
Confidence 3333445666777777776665411 22222233445556666777777777776542 33444444444433
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHH
Q 048751 758 ---MGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEA 834 (1004)
Q Consensus 758 ---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 834 (1004)
.+.+.+|.-+|++|-++- .|+..+.+....++...|++++|..++++.+.+ -..++.++..++..-...|...++
T Consensus 183 a~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-d~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-DAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCChHH
Confidence 345777777777776643 377777777777777777777777777777655 234566666666666666766665
Q ss_pred HHHH
Q 048751 835 VKQL 838 (1004)
Q Consensus 835 ~~~l 838 (1004)
..-+
T Consensus 261 ~~r~ 264 (299)
T KOG3081|consen 261 TERN 264 (299)
T ss_pred HHHH
Confidence 4433
No 133
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.35 E-value=3.7e-05 Score=71.34 Aligned_cols=95 Identities=13% Similarity=-0.076 Sum_probs=57.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
+..+...+...|++++|...|+.+....+. +...|..+..++.+.|++++|...|+++.+..|.++.++..++.++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 334455555666666666666665554432 4555556666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHC
Q 048751 759 GMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~~ 774 (1004)
|++++|+..|++.++.
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666653
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=0.00038 Score=73.87 Aligned_cols=111 Identities=11% Similarity=0.045 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAA 768 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 768 (1004)
.|++++|+..++.+++..+ -|+..+....+.+.+.++.++|.+.++++....|.....+..++.+|.+.|++.+|+.++
T Consensus 319 ~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L 397 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRIL 397 (484)
T ss_pred hcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHH
Confidence 3444444444444444222 233344444444444455555555555554444444444444445555555555555444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048751 769 EEMKLSGLLRDVISYNQVMACFATNGQLRQCGE 801 (1004)
Q Consensus 769 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 801 (1004)
++...... .|+..|..|..+|...|+..+|..
T Consensus 398 ~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 398 NRYLFNDP-EDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHhhcCC-CCchHHHHHHHHHHHhCchHHHHH
Confidence 44444321 334445555555555544444443
No 135
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.27 E-value=5.6e-05 Score=70.14 Aligned_cols=124 Identities=10% Similarity=0.001 Sum_probs=94.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048751 627 DLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEME 706 (1004)
Q Consensus 627 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 706 (1004)
.+|++..+. .|+ .+..+...+...|++++|...|+......+ .+...+..+..++...|++++|...|+...+..
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 455555543 343 345567777888888888888888887653 467788888888888888889998888888765
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048751 707 GGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYK 756 (1004)
Q Consensus 707 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 756 (1004)
+. +...+..+..++.+.|++++|+..|+...+..|.++..|.....+..
T Consensus 89 p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 89 AS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 43 77778888888888899999999999988888888888766655543
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.001 Score=64.25 Aligned_cols=184 Identities=18% Similarity=0.190 Sum_probs=106.5
Q ss_pred CHhHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048751 621 QLSNAVDLFHEMRR---AG-VEPNEV-VYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGA 695 (1004)
Q Consensus 621 ~~~~A~~~~~~m~~---~g-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 695 (1004)
+.++.++++.++.. .| ..++.. .|..++-+....|+.+.|...++.+...- +-+..+-..-...+-..|.+++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 34455555544432 22 334432 34444455556666777777777766542 11222222222223445677777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 696 KQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
.++++.+.+.++ .|..++..-+.+.-..|+.-+|++-+....+..+.|..+|..+...|...|++++|.-.++++.-..
T Consensus 106 ~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 106 IEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 777777776553 3555666556666666777777777777777777777777777777777777777777777777643
Q ss_pred CCCC-HHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 048751 776 LLRD-VISYNQVMACFATNG---QLRQCGELLHEMLT 808 (1004)
Q Consensus 776 ~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 808 (1004)
|- +..+..+...+.-.| +..-|.++|.+.++
T Consensus 185 --P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 185 --PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred --CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 43 334445555444333 34456666666654
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.00085 Score=64.83 Aligned_cols=170 Identities=18% Similarity=0.187 Sum_probs=132.3
Q ss_pred cCCHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 048751 654 TGKVEEALQYFRMMRE---CG-LWANQI-VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVT 728 (1004)
Q Consensus 654 ~g~~~~A~~~~~~m~~---~g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 728 (1004)
..+.++..+++..+.. .| ..++.. .|..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 4567888888887753 33 445554 45666677788999999999999988754 334444444445567789999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 729 EAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 729 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+|+++++.+.+.+|.|..++-.-+.+...+|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988886 447899999999999999999999999999974
Q ss_pred CCCCC-ChhhHHHHHHHHHc
Q 048751 809 QKLLP-DNGTFKVLFTILKK 827 (1004)
Q Consensus 809 ~~~~p-~~~~~~~l~~~~~~ 827 (1004)
. .| ++..+..+...+..
T Consensus 183 ~--~P~n~l~f~rlae~~Yt 200 (289)
T KOG3060|consen 183 I--QPFNPLYFQRLAEVLYT 200 (289)
T ss_pred c--CCCcHHHHHHHHHHHHH
Confidence 3 34 34445555555443
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.16 E-value=8.5e-05 Score=68.61 Aligned_cols=94 Identities=11% Similarity=0.038 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
...+...+...|++++|.+.++.+...+.. +...+..+...+.+.|++++|...++...+.+|.+...+..++.+|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 333444444445555555555544443321 3444444445555555555555555555444444555555555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 048751 759 GMLDEAIDAAEEMKL 773 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~ 773 (1004)
|++++|+..|++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555444
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.13 E-value=0.00011 Score=67.85 Aligned_cols=118 Identities=13% Similarity=0.130 Sum_probs=93.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048751 698 VYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL 777 (1004)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 777 (1004)
.++.+...... +......++..+.+.|++++|...|+.+...+|.+...|..++.++...|++++|...+++..+.+.
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p- 82 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP- 82 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 34455544332 3455667778888999999999999999998899999999999999999999999999999887652
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 048751 778 RDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFK 819 (1004)
Q Consensus 778 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 819 (1004)
.+...+..+...+...|++++|...|++.++. .|+...+.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 45677888888999999999999999988764 45544433
No 140
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.00 E-value=0.032 Score=58.89 Aligned_cols=187 Identities=10% Similarity=0.111 Sum_probs=84.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC---CCCCCHHHHHHH
Q 048751 540 NVMIKAYGKSKLYDKAFSLFKVMKNLG----TWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGA---GFKPQCLTFSSV 612 (1004)
Q Consensus 540 ~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~l 612 (1004)
+..+.++...|++.++..++++|...= ..-+..+|+.++-.+++ .+|-++.+. .+-|+ |.-+
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pd---yYem 200 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR--------SYFLELKESMSSDLYPD---YYEM 200 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH--------HHHHHHHHhcccccChH---HHHH
Confidence 445566667777777777776665432 23566667665555443 233333221 22222 3333
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHc
Q 048751 613 IAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATG--KVEEALQYFRMMRECGLWANQI-VLTSLIKAYSKI 689 (1004)
Q Consensus 613 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~ 689 (1004)
+-.|.+.=. .++.-.=..+.|......+++....-.. +..--+++++.....-+.|+.. +...|+..+..
T Consensus 201 ilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~- 273 (549)
T PF07079_consen 201 ILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS- 273 (549)
T ss_pred HHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc-
Confidence 444433211 1111000112344444444444333221 1122223333333333445432 33344444433
Q ss_pred CCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 048751 690 GCLEGAKQVYEKMKEMEGG----PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDA 745 (1004)
Q Consensus 690 g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (1004)
+.+++..+.+.+....+. --..++..++....+.++...|-+.+..+.-.+|...
T Consensus 274 -~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~s 332 (549)
T PF07079_consen 274 -DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRIS 332 (549)
T ss_pred -ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcch
Confidence 445555555544332211 1223455666666777777777777776666555433
No 141
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.0026 Score=65.93 Aligned_cols=156 Identities=13% Similarity=0.069 Sum_probs=89.0
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH------------
Q 048751 615 AYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLIN--GFAATGKVEEALQYFRMMRECGLWANQIVLT------------ 680 (1004)
Q Consensus 615 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~------------ 680 (1004)
++.-.|++++|...--...+.+ ..+. +..+++ ++--.++.+.|+..|++.+..+ |+.....
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-ATNA--EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cchh--HHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHH
Confidence 3344566666655554444422 1111 222222 2233455666666666665543 3322111
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048751 681 -SLIKAYSKIGCLEGAKQVYEKMKEMEG---GPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYK 756 (1004)
Q Consensus 681 -~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 756 (1004)
.=.+-..+.|++..|.+.|.+.+...+ .++...|.....+..+.|+.++|+.-.+...+.++.-+..|..-+.++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 111233566777777777777765433 3444455555566667777777777777777776666666666777777
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 048751 757 TMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 757 ~~g~~~~A~~~~~~~~~~~ 775 (1004)
..++|++|++-+++..+..
T Consensus 333 ~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 7777777777777776643
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.94 E-value=0.00048 Score=64.24 Aligned_cols=115 Identities=17% Similarity=0.061 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHH
Q 048751 724 LGMVTEAESMFNDIREKGQVD---AVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD--VISYNQVMACFATNGQLRQ 798 (1004)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 798 (1004)
.++...+...++.+.+..|.+ ..+...++..+...|++++|...|+.+......|+ ......+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 566666666666666665554 33444555666666666666666666666542222 2234445566666666666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHh
Q 048751 799 CGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQS 840 (1004)
Q Consensus 799 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~ 840 (1004)
|+..++..... ...........+++.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666543211 12222344455555555655555555544
No 143
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.92 E-value=0.021 Score=63.06 Aligned_cols=206 Identities=17% Similarity=0.208 Sum_probs=128.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 048751 393 SPDTKTYNILLSLYADVGNINAALRYYWKIREV-GLF--------PDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLH 463 (1004)
Q Consensus 393 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 463 (1004)
.|....|..|.......-.++-|...|-+.... |++ .+...-.+=|.+ --|++++|.+++-+|.+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 355566666665555555555555555443321 110 000111111222 2488999999998887653
Q ss_pred CCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHH
Q 048751 464 IDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDG--GLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNV 541 (1004)
Q Consensus 464 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 541 (1004)
..+..+.+.|++-...++++.-..+. .....++..++..+.....|++|.+.|..... -..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~----------~e~ 827 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD----------TEN 827 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------hHh
Confidence 34667788888888888776543222 22245889999999999999999998876433 133
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048751 542 MIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQ 621 (1004)
Q Consensus 542 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 621 (1004)
.+.++.+...+++-..+...+. -+....-.+..++...|.-++|.+.|-+-.. | .+.+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHH
Confidence 5566666666665555544433 3555667788889999999988887644321 2 244667788888
Q ss_pred HhHHHHHHHHHH
Q 048751 622 LSNAVDLFHEMR 633 (1004)
Q Consensus 622 ~~~A~~~~~~m~ 633 (1004)
|.+|.++-++..
T Consensus 894 W~~avelaq~~~ 905 (1189)
T KOG2041|consen 894 WGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHHhcc
Confidence 988888876654
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.89 E-value=2.1e-05 Score=52.47 Aligned_cols=33 Identities=52% Similarity=0.658 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 048751 206 TYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPD 238 (1004)
Q Consensus 206 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 238 (1004)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677777788888888888888888877777776
No 145
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.88 E-value=0.032 Score=61.64 Aligned_cols=154 Identities=16% Similarity=0.234 Sum_probs=91.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 048751 585 DLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN----EVVYGSLINGFAATGKVEEA 660 (1004)
Q Consensus 585 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A 660 (1004)
|.+++|+++|-+|-+.+ ..|..+.+.|+|-...++++.- |-..| ...|+.+...+.....+++|
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888877766542 2356667777776666655431 11111 35677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048751 661 LQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREK 740 (1004)
Q Consensus 661 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (1004)
.++|..-... ...+.++.+..++++-..+...+-+ +....-.+.+++.+.|.-++|.+.|-+-..
T Consensus 816 ~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~- 880 (1189)
T KOG2041|consen 816 AKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL- 880 (1189)
T ss_pred HHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC-
Confidence 7777654321 2345555555555555554443322 444555677777888887777776643221
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 741 GQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 741 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
| ...+..|...++|.+|.++.++..
T Consensus 881 --p-----kaAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 881 --P-----KAAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred --c-----HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 123455666677777777666543
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.86 E-value=0.00062 Score=73.40 Aligned_cols=119 Identities=16% Similarity=0.223 Sum_probs=66.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML 761 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 761 (1004)
|+..+...++++.|..+++++.+.. |+. ...++..+...++-.+|.+++++.....|.+...+...+..+.+.+++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3344444555555555555555533 222 223455555555555666666666655555555555555666666666
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 762 DEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 762 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
+.|+.+.+++.+.. |+ ..+|..|..+|...|++++|+..++.+
T Consensus 251 ~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 66666666666532 44 346666666666666666666666554
No 147
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.86 E-value=2.1e-05 Score=52.42 Aligned_cols=33 Identities=55% Similarity=0.828 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC
Q 048751 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVD 360 (1004)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 360 (1004)
+||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 148
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.006 Score=63.35 Aligned_cols=290 Identities=16% Similarity=0.050 Sum_probs=141.1
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 048751 581 FAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN-EVVYGSLINGFAATGKVEE 659 (1004)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 659 (1004)
+.+..++..|+..+...++.. +.+...|..-...+...|++++|.--.+.-.+. .|. .......-.++...++..+
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHHH
Confidence 334455566666666666653 333444555555555666666665555444332 222 2233333344444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHH-HHHHHHcCCHHHHHHHHHHH
Q 048751 660 ALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEG-GPDTVASNTM-ISLYAELGMVTEAESMFNDI 737 (1004)
Q Consensus 660 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~ 737 (1004)
|.+.++ +...+ ....++..++....... +|.-..|..+ ..++.-.|++++|.+.--.+
T Consensus 136 A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 136 AEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 444444 11111 11122222222222222 1333333333 24556667777777777777
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------------HHHHHHHHcCCHHHHHHHHH
Q 048751 738 REKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYN-------------QVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 738 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-------------~l~~~~~~~g~~~~A~~~~~ 804 (1004)
.+.++.+......-..++.-.++.+.|+..|++.+..+ |+...-. .=..-..+.|++.+|.+.|.
T Consensus 196 lkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 196 LKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYT 273 (486)
T ss_pred HhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHH
Confidence 77776666666555666667777777777777777644 5432211 11223345666666666666
Q ss_pred HHHHCCCCCC-----hhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhc
Q 048751 805 EMLTQKLLPD-----NGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEA 879 (1004)
Q Consensus 805 ~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~ 879 (1004)
+.+. +.|+ ...|.....+ ....|+..+|+..++.+++.++
T Consensus 274 eal~--idP~n~~~naklY~nra~v---------------------------------~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 274 EALN--IDPSNKKTNAKLYGNRALV---------------------------------NIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred Hhhc--CCccccchhHHHHHHhHhh---------------------------------hcccCCchhhhhhhhhhhhcCH
Confidence 6642 2232 2223222223 3344555555555555555531
Q ss_pred cCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 048751 880 YLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKA 931 (1004)
Q Consensus 880 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~ 931 (1004)
. -..+|..-+.++...++|++|.+-|++..+....+ +..++.-..-++-++
T Consensus 319 s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 319 S-YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKS 370 (486)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 1 12233333445555566666666666665532223 233444444444433
No 149
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.82 E-value=0.057 Score=55.86 Aligned_cols=298 Identities=16% Similarity=0.111 Sum_probs=185.9
Q ss_pred HHHHHHHHHHH--cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHH
Q 048751 608 TFSSVIAAYAR--LGQLSNAVDLFHEMRRAGVEPNEVVYGSLING--FAATGKVEEALQYFRMMRECGLWANQI--VLTS 681 (1004)
Q Consensus 608 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~ 681 (1004)
.|..|-.++.. .|+-..|.++-.+..+. +..|....-.|+.+ -.-.|+++.|.+-|+.|... |... -+..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 47777777654 57888888877765432 23444444444443 33479999999999999873 3322 2333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHH--HHHHHHH--HH
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQ--VDAV--SFAAMMY--LY 755 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~--~~~~l~~--~~ 755 (1004)
|.-.-.+.|..+.|...-+.....-.. -...+...+...+..|+|+.|+++++.-..... ++.. .-..|+. +.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 333446789999999998887765443 456778899999999999999999998776542 2221 1111111 11
Q ss_pred H-hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHH
Q 048751 756 K-TMGMLDEAIDAAEEMKLSGLLRDV-ISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIE 833 (1004)
Q Consensus 756 ~-~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 833 (1004)
. -.-+...|...-.+..+ +.||. ..-..-..++.+.|+..++-.+++.+-+....|+ ... +....+.|+.
T Consensus 239 s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gdt-- 310 (531)
T COG3898 239 SLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGDT-- 310 (531)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCCc--
Confidence 1 12244455555555544 44663 2334455677778888888888877765533333 221 1122334432
Q ss_pred HHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048751 834 AVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQG 913 (1004)
Q Consensus 834 A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 913 (1004)
+++-+++ .+++.++ .+.+......+..+-...|++..|..--+...+
T Consensus 311 a~dRlkR------------------------------a~~L~sl-k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-- 357 (531)
T COG3898 311 ALDRLKR------------------------------AKKLESL-KPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-- 357 (531)
T ss_pred HHHHHHH------------------------------HHHHHhc-CccchHHHHHHHHHHHhccchHHHHHHHHHHhh--
Confidence 2222222 1222222 244666777777888888999888888777766
Q ss_pred CCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHcCCCCC
Q 048751 914 LEPDIVTCINLVGCYGKA-GLVEGVKRIHSQLKYGKMEP 951 (1004)
Q Consensus 914 ~~pd~~t~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p 951 (1004)
..|-...|..|.+.-... |+-.++..++-+..+.+-+|
T Consensus 358 ~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 358 EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 688888899998887655 99999999988776554444
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.80 E-value=0.00097 Score=62.18 Aligned_cols=115 Identities=11% Similarity=0.118 Sum_probs=63.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEGGPD--TVASNTMISLYAELGMVTEAESMFNDIREKGQVD---AVSFAAMMYLYKTMGMLDE 763 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~ 763 (1004)
.++...+...++.+.+....-. ....-.+...+...|++++|...|+.+....+.+ ..+...++.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5556666666666555432210 1122234455666666666666666666655322 2244556666666677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 764 AIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHE 805 (1004)
Q Consensus 764 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 805 (1004)
|+..++...... .....+......+.+.|++++|...|++
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 766665532211 2234555566666777777777766654
No 151
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.80 E-value=0.00068 Score=73.10 Aligned_cols=126 Identities=14% Similarity=0.149 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048751 643 VYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYA 722 (1004)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (1004)
....|+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++.+..+... .+......-+..|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34556677777899999999999999875 44 445578888888899999999999887543 36667777778899
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 723 ELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 723 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
+.++++.|+++.+++.+..|.+..+|..|+.+|...|+++.|+..++.+..
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999999999999999999999999999999999998887754
No 152
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.76 E-value=0.0027 Score=58.23 Aligned_cols=137 Identities=8% Similarity=-0.035 Sum_probs=101.8
Q ss_pred hHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---
Q 048751 840 SSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP--- 916 (1004)
Q Consensus 840 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--- 916 (1004)
+.++..|...+...++.-+...|++.+|...|++.+.--...|....-.+..+....++...|...++.+-+. .|
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r 158 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFR 158 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccC
Confidence 3333334444455556667778888888888888877666678888888999999999999999999998874 24
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 917 DIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADLACQEMR 980 (1004)
Q Consensus 917 d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 980 (1004)
.+.+...+.+.+...|..++|+..|+.+.++ .|+...-..+...+.++|+.++|..-+..+.
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3445667778899999999999999988754 5776655556778889998888866555443
No 153
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.76 E-value=4.7e-05 Score=50.29 Aligned_cols=33 Identities=36% Similarity=0.497 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048751 205 NTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFP 237 (1004)
Q Consensus 205 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 237 (1004)
.+|+.++.+|++.|+++.|.++|++|++.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.74 E-value=0.0055 Score=64.52 Aligned_cols=92 Identities=11% Similarity=0.151 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhcCChhHHHHHHHHHHcC--CCCCc--HH
Q 048751 885 IYNVAIYAFKSSGKNDKALNTFMKMLDQGLE-----PDIV-TCINLVGCYGKAGLVEGVKRIHSQLKYG--KMEPN--EN 954 (1004)
Q Consensus 885 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-----pd~~-t~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~ 954 (1004)
.+..++..+...|++++|+++|+++...-.. .+.. .+...+-++...|+...|.+.++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4566778889999999999999998864322 1221 3344444666788999999999887522 22222 23
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 048751 955 LFKAVIDAYRNANREDLADLACQ 977 (1004)
Q Consensus 955 ~~~~l~~~~~~~g~~~~A~~~~~ 977 (1004)
....|++++ +.|+.+...+.+.
T Consensus 237 ~~~~l~~A~-~~~D~e~f~~av~ 258 (282)
T PF14938_consen 237 FLEDLLEAY-EEGDVEAFTEAVA 258 (282)
T ss_dssp HHHHHHHHH-HTT-CCCHHHHCH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHH
Confidence 556667776 4466555544443
No 155
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.73 E-value=0.00092 Score=60.83 Aligned_cols=96 Identities=9% Similarity=-0.021 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFAT 792 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 792 (1004)
....+...+...|++++|.++|+.+...+|.+...|..|+.++...|++++|+..|.......+ .|+..+-.+..++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3445666777889999999999998888888899999999999999999999999998888663 457788888888899
Q ss_pred cCCHHHHHHHHHHHHHC
Q 048751 793 NGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 793 ~g~~~~A~~~~~~~~~~ 809 (1004)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999888887543
No 156
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.71 E-value=5.8e-05 Score=49.85 Aligned_cols=33 Identities=39% Similarity=0.560 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 048751 327 STYNTLIDLYGKAGRLQDAANVFAEMLKSGVAV 359 (1004)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 359 (1004)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 357777777777777777777777777776665
No 157
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.65 E-value=0.0012 Score=60.04 Aligned_cols=96 Identities=10% Similarity=-0.057 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT 757 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (1004)
..-.+...+...|++++|..+|+.+....+. +..-|..|.-++-..|++++|+..|.......|.|+..+..++.++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3445556677889999999999988876654 556677788888899999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHC
Q 048751 758 MGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 758 ~g~~~~A~~~~~~~~~~ 774 (1004)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999988764
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.64 E-value=0.00089 Score=56.95 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNG 794 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 794 (1004)
..++..+...|++++|...++.+.+..|.+...+..++.++...|++++|++.+++...... .+..++..+...+...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHH
Confidence 34445555566666666666666655555555556666666666666666666666555432 22345555555666666
Q ss_pred CHHHHHHHHHHHH
Q 048751 795 QLRQCGELLHEML 807 (1004)
Q Consensus 795 ~~~~A~~~~~~~~ 807 (1004)
++++|...+.+..
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666665554
No 159
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.63 E-value=0.13 Score=54.37 Aligned_cols=89 Identities=10% Similarity=0.177 Sum_probs=68.4
Q ss_pred CCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 048751 318 NSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTK 397 (1004)
Q Consensus 318 ~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 397 (1004)
+....|.|..+|-.||.-|...|.+++..+++++|..- ++-=...|..-+++-....++...+.+|.+.+...+ +..
T Consensus 34 rIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ld 110 (660)
T COG5107 34 RIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLD 110 (660)
T ss_pred HhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHh
Confidence 34567999999999999999999999999999999753 222334677777777778899999999999988744 456
Q ss_pred HHHHHHHHHHhc
Q 048751 398 TYNILLSLYADV 409 (1004)
Q Consensus 398 ~~~~li~~~~~~ 409 (1004)
.|...+..-.+.
T Consensus 111 LW~lYl~YIRr~ 122 (660)
T COG5107 111 LWMLYLEYIRRV 122 (660)
T ss_pred HHHHHHHHHHhh
Confidence 666666544443
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.61 E-value=0.0018 Score=57.99 Aligned_cols=95 Identities=12% Similarity=0.022 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVD---AVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR--DVISYNQVMAC 789 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~ 789 (1004)
..++..+.+.|++++|.+.|+.+....|.+ ..++..++.++.+.|++++|+..++++....... ...++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 344445555555555555555555544332 2344455555555555555555555555432111 12344455555
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 048751 790 FATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~~ 809 (1004)
+.+.|++++|...++++++.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555443
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.57 E-value=0.00016 Score=60.02 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=43.9
Q ss_pred cCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048751 724 LGMVTEAESMFNDIREKGQV--DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGE 801 (1004)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 801 (1004)
.|+++.|+.+++++.+..|. +...+..++.+|.+.|++++|+.++++ .+.+. .+......+..++.+.|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35666666666666666553 334455566666666666666666666 22111 122333344566666666666666
Q ss_pred HHHH
Q 048751 802 LLHE 805 (1004)
Q Consensus 802 ~~~~ 805 (1004)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.00085 Score=66.90 Aligned_cols=95 Identities=20% Similarity=0.194 Sum_probs=51.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 687 SKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAID 766 (1004)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 766 (1004)
.+.+++.+|+..|.+.++..+. |.+.|..-..+|.+.|.++.|++-.+..+..+|....+|..|..+|...|++++|++
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3445555555555555554332 444444445555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHH
Q 048751 767 AAEEMKLSGLLRDVISYN 784 (1004)
Q Consensus 767 ~~~~~~~~~~~p~~~~~~ 784 (1004)
.|++.++ +.|+..+|.
T Consensus 171 aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 171 AYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHhhhc--cCCCcHHHH
Confidence 5555555 335544443
No 163
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.56 E-value=0.0013 Score=55.99 Aligned_cols=95 Identities=25% Similarity=0.313 Sum_probs=69.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
+..+...+...|++++|...++.+.+.... +...+..+..++...|++++|.+.++......+.+..++..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 445556666777777777777777664432 3456666777777778888888888888877777777788888888888
Q ss_pred CCHHHHHHHHHHHHHC
Q 048751 759 GMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~~ 774 (1004)
|++++|...+.+..+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 8888888888777653
No 164
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.56 E-value=0.0027 Score=56.93 Aligned_cols=94 Identities=13% Similarity=0.048 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHH
Q 048751 681 SLIKAYSKIGCLEGAKQVYEKMKEMEGG--PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVD---AVSFAAMMYLY 755 (1004)
Q Consensus 681 ~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~ 755 (1004)
.++..+.+.|++++|.+.+..+...... .....+..+..++.+.|++++|...|+.+....|.+ ..++..++.++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444444555555544444432211 012233344445555555555555555554443321 33444455555
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 048751 756 KTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~ 774 (1004)
.+.|++++|...++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 5555555555555555543
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.54 E-value=0.0038 Score=60.22 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPD--TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLY 755 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (1004)
.+..+...+...|++++|...+++..+....+. ...+..+..++.+.|++++|...+++.....|.+...+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 445555556666666666666666655433222 245566666777777777777777777776666666676677777
Q ss_pred HhcCCHHHHH
Q 048751 756 KTMGMLDEAI 765 (1004)
Q Consensus 756 ~~~g~~~~A~ 765 (1004)
...|+...+.
T Consensus 117 ~~~g~~~~a~ 126 (172)
T PRK02603 117 HKRGEKAEEA 126 (172)
T ss_pred HHcCChHhHh
Confidence 6666644433
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.52 E-value=0.0023 Score=69.61 Aligned_cols=92 Identities=15% Similarity=-0.001 Sum_probs=66.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHH
Q 048751 683 IKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLD 762 (1004)
Q Consensus 683 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 762 (1004)
...+...|++++|++.|+++++.... +...|..+..+|.+.|++++|+..++++.+..|.+..+|..++.+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 34455667777777777777765543 55666677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHCC
Q 048751 763 EAIDAAEEMKLSG 775 (1004)
Q Consensus 763 ~A~~~~~~~~~~~ 775 (1004)
+|+..|++.++.+
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 7777777777643
No 167
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.51 E-value=0.00012 Score=47.00 Aligned_cols=30 Identities=43% Similarity=0.613 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048751 206 TYGMLVDVYGKAGLIKEALLWIKHMKLRGI 235 (1004)
Q Consensus 206 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 235 (1004)
||++++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 566777777777777777777777766653
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.51 E-value=0.012 Score=59.79 Aligned_cols=198 Identities=10% Similarity=0.027 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048751 711 TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSF---AAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVM 787 (1004)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 787 (1004)
...+-.....+.+.|++++|.+.|+.+....|.+.... ..++.++.+.+++++|+..+++..+..+.-...-|....
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 33333445556677888888888888888777665544 566778888888888888888888754322222333333
Q ss_pred HHHHH--cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhH
Q 048751 788 ACFAT--NGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNA 865 (1004)
Q Consensus 788 ~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 865 (1004)
.+.+. .++ ..+.... .+.+. -.......+|++.+++.++..|...-. .
T Consensus 112 ~g~~~~~~~~-----~~~~~~~--~~~~~----------~rD~~~~~~A~~~~~~li~~yP~S~ya-------------~ 161 (243)
T PRK10866 112 RGLTNMALDD-----SALQGFF--GVDRS----------DRDPQHARAAFRDFSKLVRGYPNSQYT-------------T 161 (243)
T ss_pred HHHhhhhcch-----hhhhhcc--CCCcc----------ccCHHHHHHHHHHHHHHHHHCcCChhH-------------H
Confidence 33221 110 0000000 00000 000000123334444444444332110 0
Q ss_pred hhhh---HHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 048751 866 LALG---TCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ--GLEPDIVTCINLVGCYGKAGLVEGVKRI 940 (1004)
Q Consensus 866 ~A~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~l~~~~~~~g~~~~A~~~ 940 (1004)
+|.. .++..+.. --..++.-|.+.|++.-|+.-++.+++. +.......+..++.+|.+.|..++|..+
T Consensus 162 ~A~~rl~~l~~~la~-------~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~ 234 (243)
T PRK10866 162 DATKRLVFLKDRLAK-------YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV 234 (243)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence 1111 11111111 1124567788888888899988888874 2222466778888889899999988888
Q ss_pred HHHHH
Q 048751 941 HSQLK 945 (1004)
Q Consensus 941 ~~~~~ 945 (1004)
...+.
T Consensus 235 ~~~l~ 239 (243)
T PRK10866 235 AKIIA 239 (243)
T ss_pred HHHHh
Confidence 77663
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.50 E-value=0.0015 Score=65.29 Aligned_cols=101 Identities=18% Similarity=0.231 Sum_probs=89.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHH
Q 048751 719 SLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLR 797 (1004)
Q Consensus 719 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 797 (1004)
+-+.+.+++.+|+..|.++++..|.|++.|..-+.+|.+.|.++.|++-.+..+.. .|. ..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 34668899999999999999999999999999999999999999999999999884 366 679999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHH
Q 048751 798 QCGELLHEMLTQKLLPDNGTFKVLFT 823 (1004)
Q Consensus 798 ~A~~~~~~~~~~~~~p~~~~~~~l~~ 823 (1004)
+|.+.|++.++ +.|+..+|..-+.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 99999999874 6888887765443
No 170
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.49 E-value=0.0011 Score=68.26 Aligned_cols=270 Identities=17% Similarity=0.150 Sum_probs=143.7
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH--HHC--CC-CCCHHHHHHHH
Q 048751 613 IAAYARLGQLSNAVDLFHEMRRAGVEPNE----VVYGSLINGFAATGKVEEALQYFRMM--REC--GL-WANQIVLTSLI 683 (1004)
Q Consensus 613 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m--~~~--g~-~~~~~~~~~li 683 (1004)
..-+|+.|+....+.+|+...+.| ..|. .+|..|.++|.-.+++++|+++...= ... |- .-....-..|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 345788999999999999998877 3343 45777888888888888888764321 111 10 01233445566
Q ss_pred HHHHHcCCHHHHHHHHHHH----HhCCCC-CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH
Q 048751 684 KAYSKIGCLEGAKQVYEKM----KEMEGG-PDTVASNTMISLYAELGM--------------------VTEAESMFNDIR 738 (1004)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~ 738 (1004)
+.+-..|.+++|.-...+- .+.|-. ....++..+...|...|+ ++.|.++|..=.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 6666777888877655432 222211 122344456666665542 122222222211
Q ss_pred Hc----C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 739 EK----G--QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK----LSGLLR-DVISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 739 ~~----~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
+. + -....+|..|.+.|.-.|+++.|+...+.=+ +.|-+. ....+..+..++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 11 0 0122234455555555566666655443322 112111 12344555555555566666665555432
Q ss_pred HCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhcc-----CC
Q 048751 808 TQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAY-----LD 882 (1004)
Q Consensus 808 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~-----~~ 882 (1004)
...+.. ..+..+| .+...++..|.....+.+|+.++.+-++.... -.
T Consensus 263 ~LAiel--------------g~r~vEA--------------QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe 314 (639)
T KOG1130|consen 263 NLAIEL--------------GNRTVEA--------------QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE 314 (639)
T ss_pred HHHHHh--------------cchhHHH--------------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 110000 0000111 11223344455666666777766655443221 13
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 883 SFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 883 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
..++.+|+.+|...|..++|+.+.+.-++
T Consensus 315 ~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 315 LRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45789999999999999999988877765
No 171
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.48 E-value=0.0061 Score=53.66 Aligned_cols=90 Identities=19% Similarity=0.097 Sum_probs=48.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhc
Q 048751 684 KAYSKIGCLEGAKQVYEKMKEMEGGPD--TVASNTMISLYAELGMVTEAESMFNDIREKGQV---DAVSFAAMMYLYKTM 758 (1004)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 758 (1004)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++......|. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344455666666666666655554332 223444555566666666666666666655443 333444444555666
Q ss_pred CCHHHHHHHHHHHHH
Q 048751 759 GMLDEAIDAAEEMKL 773 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~ 773 (1004)
|+.++|+..+-....
T Consensus 89 gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 89 GRPKEALEWLLEALA 103 (120)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666555443
No 172
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.46 E-value=0.0029 Score=68.81 Aligned_cols=103 Identities=12% Similarity=0.034 Sum_probs=88.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQL 796 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 796 (1004)
-+..+...|++++|+..|+++.+..|.+...|..++.+|...|++++|+..++++++... .+...|..+..+|...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 356677889999999999999999999999999999999999999999999999998652 3477889999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHH
Q 048751 797 RQCGELLHEMLTQKLLPDNGTFKVLF 822 (1004)
Q Consensus 797 ~~A~~~~~~~~~~~~~p~~~~~~~l~ 822 (1004)
++|+..|++.+.. .|+.......+
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 9999999999864 55555444443
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.45 E-value=0.00035 Score=57.91 Aligned_cols=81 Identities=22% Similarity=0.287 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEGG-PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDA 767 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 767 (1004)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+.++.+......++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777888888877765542 2344455577778888888888888877 444444555555667778888888888877
Q ss_pred HHH
Q 048751 768 AEE 770 (1004)
Q Consensus 768 ~~~ 770 (1004)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 174
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.44 E-value=0.00016 Score=46.42 Aligned_cols=30 Identities=47% Similarity=0.790 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048751 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGV 357 (1004)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 357 (1004)
+||.|+++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
No 175
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.44 E-value=0.0019 Score=54.29 Aligned_cols=30 Identities=27% Similarity=0.255 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 048751 414 AALRYYWKIREVGLFPDSVTQRAILHILCQ 443 (1004)
Q Consensus 414 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 443 (1004)
..+.+|+.|...+++|+..+|+.++..+.+
T Consensus 87 ~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 87 NLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 445556666666666666666666665543
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.41 E-value=0.03 Score=57.00 Aligned_cols=204 Identities=13% Similarity=0.081 Sum_probs=119.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh--hHH
Q 048751 744 DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV--ISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNG--TFK 819 (1004)
Q Consensus 744 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~ 819 (1004)
++..+...+..+...|++++|++.|+++....+.+.. .....++.++.+.+++++|...+++.++. .|+.. -+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHH
Confidence 4555556677778899999999999999985532221 12345678889999999999999999765 33322 222
Q ss_pred HHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCCh
Q 048751 820 VLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKN 899 (1004)
Q Consensus 820 ~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 899 (1004)
....+++.... ....+......... ........+|++.++++++.-|. + .-.
T Consensus 109 ~Y~~g~~~~~~---~~~~~~~~~~~~~~----------~rD~~~~~~A~~~~~~li~~yP~-S--------------~ya 160 (243)
T PRK10866 109 LYMRGLTNMAL---DDSALQGFFGVDRS----------DRDPQHARAAFRDFSKLVRGYPN-S--------------QYT 160 (243)
T ss_pred HHHHHHhhhhc---chhhhhhccCCCcc----------ccCHHHHHHHHHHHHHHHHHCcC-C--------------hhH
Confidence 22222211000 00000000000000 00112233577777877777432 2 224
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-cCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHH
Q 048751 900 DKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLK-YGKMEPN-ENLFKAVIDAYRNANREDLADLACQ 977 (1004)
Q Consensus 900 ~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 977 (1004)
.+|...+..+.+. + ...-..+..-|.+.|.+..|..-++.+. .++-.|. .+....++++|.+.|..++|.+..+
T Consensus 161 ~~A~~rl~~l~~~-l---a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 161 TDATKRLVFLKDR-L---AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHH-H---HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4554444444321 0 0111255666888999988888887774 4444443 4567788999999999999999888
Q ss_pred HHHh
Q 048751 978 EMRT 981 (1004)
Q Consensus 978 ~m~~ 981 (1004)
.+..
T Consensus 237 ~l~~ 240 (243)
T PRK10866 237 IIAA 240 (243)
T ss_pred HHhc
Confidence 7654
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.36 E-value=0.011 Score=62.26 Aligned_cols=95 Identities=13% Similarity=0.159 Sum_probs=51.6
Q ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-----CH
Q 048751 329 YNTLIDLYGKA-GRLQDAANVFAEMLKS----GVAVD--TITFNTMIYTCGSHGNLSEAEALFCMMEESRISP-----DT 396 (1004)
Q Consensus 329 ~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~ 396 (1004)
+..+...|-+. |++++|++.|++..+. | .+. ...+..+...+.+.|++++|.++|+++...-... ++
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 44455566666 7777777777766542 2 111 2244556666777777777777777776543221 11
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 397 K-TYNILLSLYADVGNINAALRYYWKIRE 424 (1004)
Q Consensus 397 ~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 424 (1004)
. .|...+-++...||...|...|++...
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 222333355556777777777777664
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.34 E-value=0.0043 Score=59.62 Aligned_cols=93 Identities=14% Similarity=0.023 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGP--DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL 754 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 754 (1004)
..+..+...+...|++++|...++........+ ...++..+..++...|++++|+..+++.....|.....+..++.+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 344555555566666677766666665543222 123566666777777777777777777776666666666666666
Q ss_pred HH-------hcCCHHHHHHHHH
Q 048751 755 YK-------TMGMLDEAIDAAE 769 (1004)
Q Consensus 755 ~~-------~~g~~~~A~~~~~ 769 (1004)
+. ..|++++|+..++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 66 5555554443333
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.33 E-value=0.012 Score=66.88 Aligned_cols=66 Identities=8% Similarity=0.024 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCc
Q 048751 781 ISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPY 848 (1004)
Q Consensus 781 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~ 848 (1004)
..|..+.-.....|++++|...+++.+..+ |+...|..+...+...|++++|.+.++++++..|..
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 344444334444455555555555554332 344444444445555555555555555554444443
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.31 E-value=0.054 Score=50.00 Aligned_cols=131 Identities=13% Similarity=0.036 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHH
Q 048751 674 ANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQV--DAVSFAAM 751 (1004)
Q Consensus 674 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l 751 (1004)
|+...-..|..++.+.|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+..|. .+.....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 5555555666666666777777777766665444445555666666666666666666666666665531 33344455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 752 MYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 752 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
...|...|++.+|...|+.....- |+...-......+.++|+.++|..-+..+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 566666666666666666666532 44443333344455666655555444443
No 181
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.31 E-value=0.0009 Score=52.20 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=42.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
+...+.+.|++++|++.|+.+.+..|.+..++..++.++...|++++|+..|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45566777777777777777777777777777777777777777777777777776643
No 182
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.31 E-value=0.0011 Score=52.38 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHC
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG-MLDEAIDAAEEMKLS 774 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 774 (1004)
+..+|..+...+...|++++|+..|++..+.+|.++.+|..++.+|...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45667778888888888888888888888888888888888888888888 688888888887763
No 183
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.30 E-value=0.0039 Score=67.60 Aligned_cols=123 Identities=14% Similarity=0.139 Sum_probs=98.0
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH
Q 048751 567 TWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGA--GFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVY 644 (1004)
Q Consensus 567 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 644 (1004)
...+......+++.+....+++.+..++-+.... ....-..|..++++.|.+.|..+.++.+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3346677777888888888888888888887764 22233345568999999999999999999998999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKI 689 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 689 (1004)
|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999998888777767777777666666554
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.29 E-value=0.0011 Score=52.27 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=50.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 722 AELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQV 786 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 786 (1004)
.+.|++++|+++|+++....|.+..++..++.+|.+.|++++|..+++++.... |+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHHH
Confidence 467888889999999888888888888888899999999999998888888754 664444444
No 185
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.25 E-value=0.0042 Score=67.34 Aligned_cols=124 Identities=15% Similarity=0.163 Sum_probs=98.0
Q ss_pred CCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 048751 356 GVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEES--RISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVT 433 (1004)
Q Consensus 356 g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 433 (1004)
+...+......+++.+....+++++..++-..... ...--..|..++|+.|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556777778888888888889999888887654 1212234567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhc
Q 048751 434 QRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINE 479 (1004)
Q Consensus 434 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 479 (1004)
++.|+..+.+.|++..|.++..+|...+...++.+....+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998877766666655555554443
No 186
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.25 E-value=0.0034 Score=52.77 Aligned_cols=82 Identities=13% Similarity=0.242 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHHCCCCCCHH
Q 048751 327 STYNTLIDLYGKAGRLQDAANVFAEMLKSGV-AVDTITFNTMIYTCGSHG--------NLSEAEALFCMMEESRISPDTK 397 (1004)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~A~~l~~~m~~~g~~p~~~ 397 (1004)
.+-...|.-+...+++...-.+|+.++..|+ -|++.+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..
T Consensus 26 ~t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 26 ETQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 3445667777788999999999999999999 999999999998877543 3556788999999999999999
Q ss_pred HHHHHHHHHHh
Q 048751 398 TYNILLSLYAD 408 (1004)
Q Consensus 398 ~~~~li~~~~~ 408 (1004)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.2 Score=49.10 Aligned_cols=142 Identities=15% Similarity=0.136 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----H
Q 048751 643 VYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNT-----M 717 (1004)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----l 717 (1004)
..+.+++++.-.|.+.-...++.+.++...+.++.....|...-.+.|+.+.|...|+...+.....+....+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34567777777888888888888888877777888888888888899999999999887665433334333333 3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 718 ISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQV 786 (1004)
Q Consensus 718 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 786 (1004)
...|.-.+++.+|...|.++...++.++...|.-+-++.-.|+..+|++.++.|++.- |...+-+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--CccchhhhH
Confidence 3455666788888899999998888888888888888888899999999999998854 554444433
No 188
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.24 E-value=0.0095 Score=57.45 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048751 322 KPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVD--TITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTY 399 (1004)
Q Consensus 322 ~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 399 (1004)
.|.....|..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+... -+...+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 109 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSAL 109 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHH
Confidence 455567788999999999999999999999987643332 35778888899999999999999999987632 245677
Q ss_pred HHHHHHHHhcCCHHHHH
Q 048751 400 NILLSLYADVGNINAAL 416 (1004)
Q Consensus 400 ~~li~~~~~~g~~~~A~ 416 (1004)
..+...+...|+...+.
T Consensus 110 ~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHHHcCChHhHh
Confidence 77788888877754443
No 189
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.20 E-value=0.0099 Score=62.24 Aligned_cols=130 Identities=11% Similarity=0.066 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE-LGMVTEAESMFNDIREKGQVDAVSFAAMMYLY 755 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (1004)
.+|..+++...+.+..+.|..+|.++.+.+. .+..+|...+..-.+ .++.+.|.++|+...+..+.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4677788888888888888888888875432 244455555555344 45666689999988888888888888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 756 KTMGMLDEAIDAAEEMKLSGLLRDV----ISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
...|+.+.|..+|++.... + |.. ..|...+..=.+.|+.+.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888999999999888865 3 333 47888888888888888888888888653
No 190
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.19 E-value=0.0076 Score=57.92 Aligned_cols=94 Identities=7% Similarity=-0.062 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 048751 711 TVASNTMISLYAELGMVTEAESMFNDIREKGQV---DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQV 786 (1004)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 786 (1004)
...|..++..+...|++++|+..|++.....+. ...+|..++.++...|++++|+..+++..... |+ ..++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 445677778888899999999999999876543 34578899999999999999999999988753 43 4556666
Q ss_pred HHHHH-------HcCCHHHHHHHHHHH
Q 048751 787 MACFA-------TNGQLRQCGELLHEM 806 (1004)
Q Consensus 787 ~~~~~-------~~g~~~~A~~~~~~~ 806 (1004)
...+. ..|++++|...+.+.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 66666 666766555555543
No 191
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.16 E-value=0.006 Score=63.85 Aligned_cols=132 Identities=13% Similarity=0.029 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHh-cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 048751 433 TQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYIN-EGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYA 511 (1004)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 511 (1004)
+|-.+++..-+.+..+.|..+|.+..+.+ ......|...+.+-.. .++.+.|..+|+..++..+.+...+...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45555555555555666666666665322 2233444444444223 455556777777777777777788888888888
Q ss_pred hcCCHHHHHHHHhhhhhhcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 048751 512 EKGLWAEAETVFYGKRDLVGQKK-SVVEYNVMIKAYGKSKLYDKAFSLFKVMKNL 565 (1004)
Q Consensus 512 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 565 (1004)
+.|+.+.|..+|++......... ....|...+..-.+.|+.+.+.++.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888766433333 3457888888888888888888888777763
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.14 E-value=0.029 Score=63.82 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 728 TEAESMFNDIREK--GQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHE 805 (1004)
Q Consensus 728 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 805 (1004)
..+.+..++.... .+.++.+|..++......|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444443332 35566777777777777788888888888888754 6777788888888888888888888888
Q ss_pred HHHCCCCCChhhHH
Q 048751 806 MLTQKLLPDNGTFK 819 (1004)
Q Consensus 806 ~~~~~~~p~~~~~~ 819 (1004)
... +.|...||.
T Consensus 479 A~~--L~P~~pt~~ 490 (517)
T PRK10153 479 AFN--LRPGENTLY 490 (517)
T ss_pred HHh--cCCCCchHH
Confidence 764 455555544
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.13 E-value=0.01 Score=61.42 Aligned_cols=133 Identities=17% Similarity=0.067 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH----cC-CCCCH
Q 048751 572 CTYNSLVQMFAGGDLMGQAVDLLAEMQ----GAGF-KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRR----AG-VEPNE 641 (1004)
Q Consensus 572 ~t~~~ll~~~~~~~~~~~a~~~~~~m~----~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~ 641 (1004)
..|..|...|.-.|+++.|+...+.-+ +-|- ......+..+.+++.-.|+++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345556666666666666665544322 1221 12234566677777777777777776665422 11 11123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRE----C-GLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKE 704 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 704 (1004)
.+.-.|.+.|.-..+++.|+.++.+-.. . +..-....+.+|..++...|..++|..+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3444566666666677777776654321 1 1112344666777777777777777766665443
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.029 Score=56.73 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHH
Q 048751 674 ANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELG---MVTEAESMFNDIREKGQVDAVSFAA 750 (1004)
Q Consensus 674 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~ 750 (1004)
-|...|..|...|...|+.+.|...|.+..+...+ +...+..+..++.... +..++..+|+++...+|.|+.+...
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 45666777777777777777777777766665432 5555555555444322 2556677777777777777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 751 MMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 751 l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
|+..+...|++.+|...|+.|++..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 7777777777777777777777654
No 195
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.18 Score=57.60 Aligned_cols=148 Identities=15% Similarity=0.176 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 501 KTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQM 580 (1004)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 580 (1004)
.+....++-+.+.|++++|...|-+.... ..| ..+|.-|....+..+-..+++.+.+.|+. +...-..|+.+
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLnc 440 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNC 440 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHH
Confidence 34455567777888888888887665432 222 23566777888888888999999999985 77777889999
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 581 FAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEA 660 (1004)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 660 (1004)
|.+.++.+.-.++.+... .|.- ..-....+..+.+.+-.++|..+-..... +......+ +...+++++|
T Consensus 441 YiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eA 509 (933)
T KOG2114|consen 441 YIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEA 509 (933)
T ss_pred HHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHH
Confidence 999999998877766544 2211 11134456667777777777766554432 23333333 4557889999
Q ss_pred HHHHHHH
Q 048751 661 LQYFRMM 667 (1004)
Q Consensus 661 ~~~~~~m 667 (1004)
++++..+
T Consensus 510 l~yi~sl 516 (933)
T KOG2114|consen 510 LRYISSL 516 (933)
T ss_pred HHHHhcC
Confidence 9988776
No 196
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.06 E-value=0.0067 Score=57.98 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=29.9
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC
Q 048751 341 RLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGN 376 (1004)
Q Consensus 341 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 376 (1004)
+-+-|++++++|...|+-||..|+..|++.+++.+.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 456788899999999999999999999998866553
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.06 E-value=0.023 Score=50.05 Aligned_cols=90 Identities=24% Similarity=0.258 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---hh-hHHHHH
Q 048751 749 AAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD--VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPD---NG-TFKVLF 822 (1004)
Q Consensus 749 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~-~~~~l~ 822 (1004)
..+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++.... .|+ .. ....+.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHH
Confidence 3455566666666666666666666654333 334555666666666666666666666543 122 11 111222
Q ss_pred HHHHcCCCcHHHHHHHHh
Q 048751 823 TILKKGGFPIEAVKQLQS 840 (1004)
Q Consensus 823 ~~~~~~g~~~~A~~~l~~ 840 (1004)
.++...|+.++|+..+-.
T Consensus 83 l~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 344455555555554443
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.06 E-value=0.03 Score=55.60 Aligned_cols=180 Identities=16% Similarity=0.089 Sum_probs=89.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQV---DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFAT 792 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 792 (1004)
..+..+...|++++|.+.|+.+....|. -..+...++.++.+.|++++|+..+++.++.-+.-...-+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 4455566778888888888888777643 3445667777888888888888888887764321112222222222211
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhh---
Q 048751 793 NGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALG--- 869 (1004)
Q Consensus 793 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~--- 869 (1004)
........ .... ..+...+|...++..++..|...-. .+|..
T Consensus 90 ~~~~~~~~---------~~~~-------------D~~~~~~A~~~~~~li~~yP~S~y~-------------~~A~~~l~ 134 (203)
T PF13525_consen 90 YKQIPGIL---------RSDR-------------DQTSTRKAIEEFEELIKRYPNSEYA-------------EEAKKRLA 134 (203)
T ss_dssp HHHHHHHH----------TT----------------HHHHHHHHHHHHHHHH-TTSTTH-------------HHHHHHHH
T ss_pred HHhCccch---------hccc-------------ChHHHHHHHHHHHHHHHHCcCchHH-------------HHHHHHHH
Confidence 11110000 0001 1112234444555555444443211 01111
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHH
Q 048751 870 TCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD----IVTCINLVGCYGKAGLVEGVKR 939 (1004)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~l~~~~~~~g~~~~A~~ 939 (1004)
.+...+.. .-..++..|.+.|.+..|+.-++.+++. -|+ ...+..|+.++.+.|..+.+..
T Consensus 135 ~l~~~la~-------~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 135 ELRNRLAE-------HELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHH-------HHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHH-------HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 11111111 1223567788888888888888888873 343 3466777778888887774443
No 199
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.047 Score=55.26 Aligned_cols=100 Identities=9% Similarity=0.043 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 709 PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG---MLDEAIDAAEEMKLSGLLRDVISYNQ 785 (1004)
Q Consensus 709 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~ 785 (1004)
.|...|..|...|...|+++.|...|.+..+..++++..+..++.++..+. ...++..+|++++.... -|..+...
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~l 232 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALSL 232 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHHH
Confidence 388899999999999999999999999999999999999988888776554 36688899999998652 34667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 786 VMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 786 l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
|...+...|++.+|...|+.|++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 888899999999999999999865
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.00 E-value=0.0038 Score=49.16 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=49.5
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHH
Q 048751 477 INEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVM 542 (1004)
Q Consensus 477 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 542 (1004)
...|++++|.+.|+++....|.+..+...++.+|.+.|++++|..++..+.. ..|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~---~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK---QDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG---GGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCcCHHHHHHH
Confidence 4678888888888888888888888999999999999999999999988876 45554444443
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.98 E-value=0.093 Score=57.68 Aligned_cols=53 Identities=17% Similarity=0.098 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
+...+..-+.+...+.-|.++|.+|-.. ..++......++|++|..+.++..+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCcc
Confidence 4444444455556666777777766543 3456667777777777777766554
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.96 E-value=0.0089 Score=57.16 Aligned_cols=102 Identities=17% Similarity=0.316 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048751 326 TSTYNTLIDLYGKA-----GRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYN 400 (1004)
Q Consensus 326 ~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 400 (1004)
-.+|..+++.|.+. |.++=....+..|.+.|+.-|..+|+.|+..+-+ |.+- -..+|+.+-
T Consensus 47 K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F------------ 112 (228)
T PF06239_consen 47 KATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF------------ 112 (228)
T ss_pred HHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh------------
Confidence 45677777777643 5566666667777777777777777777777654 3221 001111110
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 048751 401 ILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNM 446 (1004)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 446 (1004)
..| -.+-+-|++++++|...|+-||..++..|++.+.+.+.
T Consensus 113 ---~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ---MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 000 12345667777777777777777777777777765554
No 203
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.96 E-value=0.0042 Score=48.34 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=48.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDA 745 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (1004)
+...+.+.|++++|...|+.+.+..+. +...+..+..++.+.|++++|...|+++.+..|.++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455677888888888888888876643 667778888888888888888888888888776653
No 204
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.93 E-value=0.77 Score=49.00 Aligned_cols=122 Identities=18% Similarity=0.179 Sum_probs=70.7
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhCCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH--
Q 048751 140 TVVLKEQKSWERVIRVFEFFKSQKDYVPN----VIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDV-- 213 (1004)
Q Consensus 140 ~~~l~~~~~~~~a~~~f~~~~~~~~~~~~----~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-- 213 (1004)
..+|..+++..+|..+|-.+-......|. ....+.+|+++.. .+.+.+...+.+..+.. | ...|-.|..+
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~ 88 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALV 88 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHH
Confidence 46788889999999988766533222221 2345566777664 46777777777766543 1 2234444443
Q ss_pred HHhcCCHHHHHHHHHHHHhc--CCC------------CChhhHHHHHHHHHHcCChhHHHHHHHHh
Q 048751 214 YGKAGLIKEALLWIKHMKLR--GIF------------PDEVTMNTVVRVLKEVGEFDSADRFYKDW 265 (1004)
Q Consensus 214 ~~~~g~~~~A~~~~~~m~~~--g~~------------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 265 (1004)
+-+.|.+++|++.+..-... +.. +|-+.-+.....+.+.|++.++..+++++
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 34677788887776665544 222 12222344455666666666666666554
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.89 E-value=0.14 Score=56.36 Aligned_cols=100 Identities=19% Similarity=0.115 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048751 640 NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMIS 719 (1004)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (1004)
+..+...+..-+.+...+..|-++|..|-+. ..+++.....++|++|..+.+..-+. .|+ +|.-...
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHH
Confidence 3444444445555566677777777776432 34566667778888888776654331 222 3333444
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 720 LYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
-++...++++|.+.| .+.|+..+|..+++++..
T Consensus 813 wLAE~DrFeEAqkAf---------------------hkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAF---------------------HKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HhhhhhhHHHHHHHH---------------------HHhcchHHHHHHHHHhhh
Confidence 555556666665443 345666666666666653
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.81 E-value=0.0075 Score=48.29 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=46.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 719 SLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 719 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
..|.+.+++++|.++++.+...+|.++..|...+.++...|++++|...+++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467778888888888888888888888888888888888888888888888888755
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.80 E-value=0.028 Score=57.69 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVD---AVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD----VISYNQ 785 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ 785 (1004)
.|...+..+.+.|++++|...|+.+.+..|.+ +.++..++.+|...|++++|+..|+.+.+.. |+ ...+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHHHHH
Confidence 34444444455566777777777776666554 3566666667777777777777777666532 22 334444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 786 VMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 786 l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
++..+...|++++|..+|+++++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555566666677777666666543
No 208
>PRK15331 chaperone protein SicA; Provisional
Probab=96.74 E-value=0.081 Score=48.68 Aligned_cols=91 Identities=10% Similarity=-0.043 Sum_probs=73.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQL 796 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 796 (1004)
...-+...|++++|..+|+-+.-.++.+...|..|+.++...+++++|+..|......+. -|+..+-....++...|+.
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 344566789999999999988888888888888888888899999999988887766543 4455566677888889999
Q ss_pred HHHHHHHHHHHH
Q 048751 797 RQCGELLHEMLT 808 (1004)
Q Consensus 797 ~~A~~~~~~~~~ 808 (1004)
+.|...|...+.
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999998888876
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.66 E-value=0.034 Score=57.09 Aligned_cols=98 Identities=10% Similarity=0.006 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPD--TVASNTMISLYAELGMVTEAESMFNDIREKGQV---DAVSFAAMM 752 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~ 752 (1004)
.|...+..+.+.|++++|...|+.+++..+... ..++..++.+|...|++++|...|+.+.+..|. ...++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556777777777777776544321 235556777777788888888888888776654 445566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 048751 753 YLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 753 ~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
.++...|++++|..+|+++++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 77777888888888888777743
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.49 Score=46.53 Aligned_cols=156 Identities=15% Similarity=0.170 Sum_probs=114.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 656 KVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFN 735 (1004)
Q Consensus 656 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 735 (1004)
..+..++.|++-.. .+.+.++..+.-.|.+.-...++.+.++...+.++.....|++.-.+.|+.+.|...|+
T Consensus 164 ~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 164 AEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred chhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 33555556655433 34566777777788888889999999988877888889999999999999999999999
Q ss_pred HHHHcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 736 DIREKG------QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 736 ~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
+..+.. .........+...|.-++++..|...+.+....+. .|+..-|.-.-+..-.|+..+|++.++.|...
T Consensus 237 ~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 237 DVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 776543 23344455566677888899999999988887653 45555566555666778999999999998754
Q ss_pred CCCCChhhHHHH
Q 048751 810 KLLPDNGTFKVL 821 (1004)
Q Consensus 810 ~~~p~~~~~~~l 821 (1004)
.|...+...+
T Consensus 316 --~P~~~l~es~ 325 (366)
T KOG2796|consen 316 --DPRHYLHESV 325 (366)
T ss_pred --CCccchhhhH
Confidence 4555554443
No 211
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.57 E-value=1.4 Score=47.02 Aligned_cols=79 Identities=6% Similarity=-0.012 Sum_probs=61.2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 048751 166 VPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTV 245 (1004)
Q Consensus 166 ~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 245 (1004)
+-|...|-.||.-|+..|..++.++.+++|..-- +--..+|..-+++-....++.....+|.+.....+.. ..|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l--dLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL--DLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH--hHHHHH
Confidence 4577799999999999999999999999997532 4445668877887777889999999999988875543 444444
Q ss_pred HH
Q 048751 246 VR 247 (1004)
Q Consensus 246 ~~ 247 (1004)
+.
T Consensus 116 l~ 117 (660)
T COG5107 116 LE 117 (660)
T ss_pred HH
Confidence 43
No 212
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.57 E-value=1.3 Score=46.92 Aligned_cols=106 Identities=20% Similarity=0.238 Sum_probs=64.4
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048751 610 SSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKI 689 (1004)
Q Consensus 610 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 689 (1004)
+..|.-+...|+...|.++-.+.. .|+..-|-..+.+|+..++|++-.++... +-+++.|..++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 334455556677666666655553 46666677777777777777665554321 12345677777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 690 GCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFN 735 (1004)
Q Consensus 690 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 735 (1004)
|+..+|..+...+ + + ..-+..|.+.|++.+|.+.--
T Consensus 251 ~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHH
Confidence 7777777666551 1 1 344566677777777766543
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.55 E-value=0.44 Score=50.93 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 887 NVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 887 ~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
-.++.++.-.|+.++|.+.+++|.+
T Consensus 309 ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 309 ATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 3344445555555555555555554
No 214
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.55 E-value=0.25 Score=50.78 Aligned_cols=221 Identities=10% Similarity=-0.015 Sum_probs=114.6
Q ss_pred cCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHCC-CCCCHHHHHHHHHHHHHcCC
Q 048751 724 LGMVTEAESMFNDIREKG---QVDAVSFAAMMYLYKTMGMLDEAIDAAEEM----KLSG-LLRDVISYNQVMACFATNGQ 795 (1004)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~p~~~~~~~l~~~~~~~g~ 795 (1004)
..+.++|+..+.+..++- .....++..+..+.++.|++++++..---. .+.. -..-...|..+.+++.+.-+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444443332 112334555556666666666555332111 1100 00112344555555555555
Q ss_pred HHHHHHHHHHHHHC-CCCCChh---hHHHHHHHHHcCCCcHHHHHHHHhHhhccCCc-------hhhhHHHHHHHHHhhh
Q 048751 796 LRQCGELLHEMLTQ-KLLPDNG---TFKVLFTILKKGGFPIEAVKQLQSSYQEVKPY-------ASEAIITSVYSVVGLN 864 (1004)
Q Consensus 796 ~~~A~~~~~~~~~~-~~~p~~~---~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~-------~~~~~~~~l~~~~~~~ 864 (1004)
+.+++.+-..-... |..|... ....+..+..-.+.++++++.++.+++-.... .....++.+|...+++
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 55555554443321 2223111 12223344444555667777777666643221 1123456777888888
Q ss_pred HhhhhHHHHHHhhhccC---C------chhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHh
Q 048751 865 ALALGTCETLIKAEAYL---D------SFIYNVAIYAFKSSGKNDKALNTFMKMLD----QGLEP-DIVTCINLVGCYGK 930 (1004)
Q Consensus 865 ~~A~~~~~~~~~~~~~~---~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p-d~~t~~~l~~~~~~ 930 (1004)
++|+-+..++.+.-... | ..+...+..+|...|+.-+|.+.-++..+ .|-.| -......+.+.|..
T Consensus 179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS 258 (518)
T ss_pred hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 87777666665542111 1 12345566777788888888777776654 23333 23455677788888
Q ss_pred cCChhHHHHHHHHH
Q 048751 931 AGLVEGVKRIHSQL 944 (1004)
Q Consensus 931 ~g~~~~A~~~~~~~ 944 (1004)
.|+.|.|..-++.+
T Consensus 259 ~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 259 RGDLERAFRRYEQA 272 (518)
T ss_pred cccHhHHHHHHHHH
Confidence 88888877766543
No 215
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.53 E-value=0.5 Score=46.88 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=26.1
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 614 AAYARLGQLSNAVDLFHEMRRAGVE--PNEVVYGSLINGFAATGKVEEALQYFRMMREC 670 (1004)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 670 (1004)
..+...|++.+|...|+.+...... --....-.++.++.+.|+++.|...++..++.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344555555555555555543100 01233334455555555555555555555543
No 216
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.52 E-value=0.012 Score=46.42 Aligned_cols=65 Identities=23% Similarity=0.205 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcC
Q 048751 676 QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELG-MVTEAESMFNDIREKG 741 (1004)
Q Consensus 676 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 741 (1004)
..+|..+...+...|++++|+..|++.++.... +...|..+..++...| ++++|++.+++..+..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 445555666666666666666666666654432 4455566666666666 4666666666665543
No 217
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=1.6 Score=50.34 Aligned_cols=117 Identities=17% Similarity=0.184 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHH----HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048751 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMI----YTCGSHGNLSEAEALFCMMEESRISPDTKTYNILL 403 (1004)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 403 (1004)
....-+..+++...++-|+.+-+ ..+. |..+...+. .-+.+.|++++|...|-+-... ++|. .+|
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 45566777888888888877643 3333 333333333 3345788888888777665532 2332 345
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 404 SLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIE 456 (1004)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (1004)
.-|.+...+.+-..+++.+.+.|+. +..--..|+.+|.+.++.++-.+..+.
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 5666666777777777777777764 444456677788888887766655543
No 218
>PRK15331 chaperone protein SicA; Provisional
Probab=96.32 E-value=0.11 Score=47.83 Aligned_cols=89 Identities=9% Similarity=-0.076 Sum_probs=77.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHH
Q 048751 684 KAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDE 763 (1004)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 763 (1004)
.-+...|++++|..+|.-+...++. +..-|..|..++-..+++++|+..|.......+.|+..+...+.+|...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 3456789999999999988876664 566677888888899999999999999988888888889999999999999999
Q ss_pred HHHHHHHHHH
Q 048751 764 AIDAAEEMKL 773 (1004)
Q Consensus 764 A~~~~~~~~~ 773 (1004)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999999887
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.31 E-value=0.61 Score=49.88 Aligned_cols=176 Identities=15% Similarity=0.038 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCChhhHH
Q 048751 746 VSFAAMMYLYKTMGMLDEAIDAAEEMKLSG---LLRDVISYNQVMACFAT---NGQLRQCGELLHEMLTQKLLPDNGTFK 819 (1004)
Q Consensus 746 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~ 819 (1004)
.+...++-+|....+|+..+++.+.+...- +......--..+-++.+ .|+.++|+.++..++...-.+++.++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334455555666666666666666665420 00112222233445555 677777777777755555556666666
Q ss_pred HHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCCh
Q 048751 820 VLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKN 899 (1004)
Q Consensus 820 ~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 899 (1004)
.+...|... ..+. ........++|++.|.+..+.. +|.++=-+++..+...|..
T Consensus 222 L~GRIyKD~-------------~~~s-----------~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 222 LLGRIYKDL-------------FLES-----------NFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHD 275 (374)
T ss_pred HHHHHHHHH-------------HHHc-----------CccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCc
Confidence 655544310 0000 0001111345566666666553 2333323333333334422
Q ss_pred HHH----HHHH----HHHHHCCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcC
Q 048751 900 DKA----LNTF----MKMLDQGL---EPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYG 947 (1004)
Q Consensus 900 ~~A----~~~~----~~m~~~g~---~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~ 947 (1004)
.+. .++- ..+.++|. ..|-+-+.+++.++.-.|+.++|.+..+++.+.
T Consensus 276 ~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 276 FETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 111 1111 11112332 247788889999999999999999999998643
No 220
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.30 E-value=0.32 Score=46.36 Aligned_cols=181 Identities=16% Similarity=0.115 Sum_probs=103.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCG 800 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 800 (1004)
|-..|-+.-|+--|.+.....|.-+.++|.++--+...|+++.|.+.|+...+.++.-+-...|.-| ++.-.|++.-|.
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq 153 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQ 153 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhH
Confidence 4455667777777777777788888888888888888899999999888888754322222233322 334567888887
Q ss_pred HHHHHHHHCCCCCChhhHHHHHH-HHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHH--HHhhhHhhhhHHHHHHhh
Q 048751 801 ELLHEMLTQKLLPDNGTFKVLFT-ILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYS--VVGLNALALGTCETLIKA 877 (1004)
Q Consensus 801 ~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~--~~~~~~~A~~~~~~~~~~ 877 (1004)
+-+.+.-..+ |+. .|+.+-- .-...-++.+|...+.+-.+.... ..|++.+. ..|...+ ...++++..
T Consensus 154 ~d~~~fYQ~D--~~D-PfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~----e~WG~~iV~~yLgkiS~-e~l~~~~~a- 224 (297)
T COG4785 154 DDLLAFYQDD--PND-PFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDK----EQWGWNIVEFYLGKISE-ETLMERLKA- 224 (297)
T ss_pred HHHHHHHhcC--CCC-hHHHHHHHHHHhhCCHHHHHHHHHHHHHhccH----hhhhHHHHHHHHhhccH-HHHHHHHHh-
Confidence 7666664332 211 1222221 122334566776555443332221 22332211 1222211 011111111
Q ss_pred hccC-------CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 878 EAYL-------DSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 878 ~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
+... -..+|..|+.-|...|+.++|..+|+-.+.
T Consensus 225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1010 134688888899999999999999988775
No 221
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.27 E-value=0.17 Score=51.96 Aligned_cols=223 Identities=10% Similarity=-0.004 Sum_probs=141.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCC---ChhhHHHHHHHHHc
Q 048751 755 YKTMGMLDEAIDAAEEMKLSG--LLRDVISYNQVMACFATNGQLRQCGELLHEMLTQK--LLP---DNGTFKVLFTILKK 827 (1004)
Q Consensus 755 ~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p---~~~~~~~l~~~~~~ 827 (1004)
+....++++|+..+.+.+.+- ......+|..+..+.+..|.+++++.+--.-++.- ... --..|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788887777666531 11124567788888999999988765443322211 111 12234555555555
Q ss_pred CCCcHHHHHHHHhHhhccC----Cchh--hhHHHHHHHHHhhhHhhhhHHHHHHhhhc-----cCCchhHHHHHHHHHhc
Q 048751 828 GGFPIEAVKQLQSSYQEVK----PYAS--EAIITSVYSVVGLNALALGTCETLIKAEA-----YLDSFIYNVAIYAFKSS 896 (1004)
Q Consensus 828 ~g~~~~A~~~l~~~~~~~~----~~~~--~~~~~~l~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 896 (1004)
..+..+++.+-...+.... .... ...++..+...+.++++++.|+++..... -....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 5555666655554444321 1112 23344456677788899999998877532 22345799999999999
Q ss_pred CChHHHHHHHHHHHH----CCCCC-C----HHHHHHHHHHHHhcCChhHHHHHHHHHHc----CCCCCc-HHHHHHHHHH
Q 048751 897 GKNDKALNTFMKMLD----QGLEP-D----IVTCINLVGCYGKAGLVEGVKRIHSQLKY----GKMEPN-ENLFKAVIDA 962 (1004)
Q Consensus 897 g~~~~A~~~~~~m~~----~g~~p-d----~~t~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~ 962 (1004)
.++++|+-+..++.+ .|+.- + ....-.|.-++...|.+-+|.+..++..+ .|-.+. +.....++|+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999988777765 23321 1 12344566678889999888888876543 343443 5677899999
Q ss_pred HHhcCChhHHHHHHH
Q 048751 963 YRNANREDLADLACQ 977 (1004)
Q Consensus 963 ~~~~g~~~~A~~~~~ 977 (1004)
|...|+.|.|..-++
T Consensus 256 yR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYE 270 (518)
T ss_pred HHhcccHhHHHHHHH
Confidence 999999888755444
No 222
>PRK11906 transcriptional regulator; Provisional
Probab=96.24 E-value=0.1 Score=56.41 Aligned_cols=111 Identities=13% Similarity=-0.015 Sum_probs=87.8
Q ss_pred hhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 048751 862 GLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD-IVTCINLVGCYGKAGLVEGVKRI 940 (1004)
Q Consensus 862 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l~~~~~~~g~~~~A~~~ 940 (1004)
....+|.+..+++++.+ +.|+.+...++.++...|+.+.|...|++... +.|| ..+|....+.+.-+|+.++|.+.
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34456888888999887 55899999999999999999999999999987 7886 55788888888899999999999
Q ss_pred HHHHHcCCCCCc---HHHHHHHHHHHHhcCChhHHHHHHHH
Q 048751 941 HSQLKYGKMEPN---ENLFKAVIDAYRNANREDLADLACQE 978 (1004)
Q Consensus 941 ~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 978 (1004)
+++.. .++|. +.+.+..++.|...+ .++|.+++-+
T Consensus 395 i~~al--rLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 395 IDKSL--QLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHh--ccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 98853 34554 566777788887755 6677666543
No 223
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.21 E-value=2.8 Score=46.82 Aligned_cols=336 Identities=10% Similarity=0.016 Sum_probs=171.7
Q ss_pred CHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHH-cCCChhHHHHHH
Q 048751 481 LLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYG-KSKLYDKAFSLF 559 (1004)
Q Consensus 481 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~l~ 559 (1004)
..+.+...+..++...|..-.-|...+..-.+.|..+.+.++|++... +.+.++..|.....-++ ..|+.+.....|
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 345555566666666666666777777777777777777777777654 35566666666555443 346666666777
Q ss_pred HHHHHC-CCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---Hc------CCHhHHHHH
Q 048751 560 KVMKNL-GTW-PDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYA---RL------GQLSNAVDL 628 (1004)
Q Consensus 560 ~~m~~~-g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~---~~------g~~~~A~~~ 628 (1004)
+..... |.. -....|...|..-..++++.....+++..++. |. ..|+....-|. +. ...+++.++
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l 213 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLLNQNEEKILLSIDELIQL 213 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHHhcCChhhhcCHHHHHHH
Confidence 766543 221 12334555666666777777777777777763 21 12222222221 11 112222222
Q ss_pred HHHHHHc----CCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 629 FHEMRRA----GVEPNEVVYGSLINGFAA-TGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMK 703 (1004)
Q Consensus 629 ~~~m~~~----g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 703 (1004)
-...... -..+....+..-+.--.. .+..+++.....+.. ...-..+-......+....++.-+
T Consensus 214 ~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 214 RSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhHhHHHHHHhhhhhc
Confidence 1111110 000001111111110000 001111111111110 011111222222333333344333
Q ss_pred hCCC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048751 704 EMEG-------GPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL 776 (1004)
Q Consensus 704 ~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 776 (1004)
+... .++..+|+..++--.+.|+.+...-+|++..-....-...|...+.-....|+.+-|-.++....+--.
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 3211 235567888888888999999999999988776555666777777777777888888777776665444
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHcCCCcHHHH
Q 048751 777 LRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGT-FKVLFTILKKGGFPIEAV 835 (1004)
Q Consensus 777 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~ 835 (1004)
+..+.+-..-....-..|++..|..+++...+. . |+... -..-+....+.|..+.+.
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhh
Confidence 222333222223345567888888888888655 3 44332 222233344555555544
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.16 E-value=0.12 Score=48.23 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH
Q 048751 714 SNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL-----SGLLRDVI 781 (1004)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~ 781 (1004)
...++..+...|++++|..+.+.+....|.+...|..++.+|...|+..+|++.|+++.. .|+.|+..
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 344556666677777777777777777777777777777777777777777777766542 35555543
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.10 E-value=0.17 Score=54.74 Aligned_cols=66 Identities=11% Similarity=-0.054 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 709 PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAV---SFAAMMYLYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 709 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
.+...++.+..+|.+.|++++|+..|++..+.+|.+.. +|..++.+|...|++++|+..+++.++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35667888899999999999999999999999888774 5999999999999999999999999884
No 226
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.07 E-value=0.043 Score=43.83 Aligned_cols=64 Identities=20% Similarity=0.098 Sum_probs=46.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 048751 684 KAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSF 748 (1004)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 748 (1004)
..|.+.+++++|.++++.+...++. +...+.....++.+.|++++|.+.|+...+..|.+....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4566777778888887777776544 666667777777888888888888888877776655543
No 227
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.89 E-value=3 Score=44.31 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048751 643 VYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYA 722 (1004)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (1004)
+.+..+.-+...|+...|.++-.+. ++ |+...|...+.+++..++|++-.++... .-++.-|.-++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444566667788888888776655 34 8888999999999999999988776432 124467888899999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 723 ELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEM 771 (1004)
Q Consensus 723 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 771 (1004)
+.|...+|..+..++. +..-+..|.+.|++.+|.+..-+.
T Consensus 249 ~~~~~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999998888732 256778889999999998765443
No 228
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.81 E-value=2.5 Score=42.77 Aligned_cols=130 Identities=22% Similarity=0.125 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH-HH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEM-EGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMY-LY 755 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~-~~ 755 (1004)
.+......+...+.+..+...+...... ........+..+...+...+.+..+.+.+.......+.+......... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3344444444444444444444443321 111223333344444444444555555555544443332222222222 45
Q ss_pred HhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 756 KTMGMLDEAIDAAEEMKLSGL--LRDVISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
...|+++.|...+++...... ......+......+...++.+++...+.+..
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 555555555555555533111 0112222223333444455555555555554
No 229
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.81 E-value=0.29 Score=45.54 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCCChhhHH
Q 048751 746 VSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEML-----TQKLLPDNGTFK 819 (1004)
Q Consensus 746 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~ 819 (1004)
.+...++..+...|++++|+.+.+++....+ -|...|..++.+|...|+..+|.+.|+++. +.|+.|+..+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 3556677888899999999999999998663 467899999999999999999999999983 248888876644
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.79 E-value=0.029 Score=45.57 Aligned_cols=60 Identities=22% Similarity=0.279 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC---C-C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKG---Q-V---DAVSFAAMMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
+++.+...|...|++++|+..|++..+.. + . -..++..++.+|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555666666666666666666554321 1 0 12334445555555555555555554443
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.73 E-value=2.1 Score=48.56 Aligned_cols=85 Identities=19% Similarity=0.206 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHHcCCHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG--L-LRDVISYNQVMACFATNGQLRQCGE 801 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~~~~~~~l~~~~~~~g~~~~A~~ 801 (1004)
...+.|.++++.+.+..|........-+..+...|+.++|++.|++..... . +.....+--+..++.-..+|++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 446666677777766666666666666666666777777777766544311 1 0112344455566666777777777
Q ss_pred HHHHHHHC
Q 048751 802 LLHEMLTQ 809 (1004)
Q Consensus 802 ~~~~~~~~ 809 (1004)
.|.++.+.
T Consensus 327 ~f~~L~~~ 334 (468)
T PF10300_consen 327 YFLRLLKE 334 (468)
T ss_pred HHHHHHhc
Confidence 77777654
No 232
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=1 Score=43.92 Aligned_cols=202 Identities=15% Similarity=0.112 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFA 791 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 791 (1004)
.|..-..+|....++++|...+.+..+-...+...| -...-++.|.-+.+++.+ + +. ...|+.....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf-------hAAKayEqaamLake~~k--l-sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF-------HAAKAYEQAAMLAKELSK--L-SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH-------HHHHHHHHHHHHHHHHHH--h-HHHHHHHHHHHHHHH
Confidence 344445667777777777776666655332222222 122334555555555554 1 22 334555666677
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchh-------hhHHHHHHHHHhhh
Q 048751 792 TNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYAS-------EAIITSVYSVVGLN 864 (1004)
Q Consensus 792 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-------~~~~~~l~~~~~~~ 864 (1004)
..|.++.|-..+++.-+ ..+.-++++|+.++++.+........ ..-.+.++.+..++
T Consensus 103 E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 77777766666665521 12233455555555555443222111 11123445566666
Q ss_pred HhhhhHHHHHHhhh----ccCCc-hhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCC-CHHHHHHHHHHHHhcCChhH
Q 048751 865 ALALGTCETLIKAE----AYLDS-FIYNVAIYAFKSSGKNDKALNTFMKMLDQG--LEP-DIVTCINLVGCYGKAGLVEG 936 (1004)
Q Consensus 865 ~~A~~~~~~~~~~~----~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p-d~~t~~~l~~~~~~~g~~~~ 936 (1004)
.+|-..+.+..... .-++. ..|...|-.|....++..|...++.-...+ ..| |..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 66555554432221 11111 234555555666667777777777654421 122 456777777655 5566666
Q ss_pred HHHHH
Q 048751 937 VKRIH 941 (1004)
Q Consensus 937 A~~~~ 941 (1004)
+..++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 66654
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.66 E-value=2.8 Score=42.32 Aligned_cols=200 Identities=21% Similarity=0.182 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRRA-GVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIK 684 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 684 (1004)
...+......+...+++..+...+...... ........+..+...+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 345555566666667777666666665531 123344555556666666666677777777666543322 112222222
Q ss_pred -HHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCC
Q 048751 685 -AYSKIGCLEGAKQVYEKMKEMEG--GPDTVASNTMISLYAELGMVTEAESMFNDIREKGQV-DAVSFAAMMYLYKTMGM 760 (1004)
Q Consensus 685 -~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 760 (1004)
.+...|+++.|...+.+...... ......+......+...++.+.|...+.......+. ....+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56666777777777776644221 112223333334455666777777777777766665 46666666677777777
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 761 LDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 761 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
++.|...+....... |+ ...+..+...+...+..+++...+.+...
T Consensus 218 ~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777776666633 33 23333333333355556666665555543
No 234
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.62 E-value=0.022 Score=46.29 Aligned_cols=64 Identities=23% Similarity=0.339 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CcC-HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLKS----GV-AVD-TITFNTMIYTCGSHGNLSEAEALFCMMEE 389 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~t~~~ll~~~~~~g~~~~A~~l~~~m~~ 389 (1004)
..+|+.+...|...|++++|++.|++..+. |- .|+ ..+++.+..++...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567888888888888888888888887643 21 122 44666777777777888888777776653
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.60 E-value=0.16 Score=54.84 Aligned_cols=70 Identities=13% Similarity=0.030 Sum_probs=59.9
Q ss_pred CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 048751 319 SVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDT----ITFNTMIYTCGSHGNLSEAEALFCMMEES 390 (1004)
Q Consensus 319 ~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~l~~~m~~~ 390 (1004)
....|++...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|++++|++.+++..+.
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567888999999999999999999999999998886 4553 35888889999999999999999998875
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.25 Score=52.10 Aligned_cols=139 Identities=14% Similarity=0.039 Sum_probs=94.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048751 647 LINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGM 726 (1004)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 726 (1004)
-.+.|.+.|++..|..-|++.+.. + . +...-+.++...... .-...++.+.-+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~-l-~-----------~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF-L-E-----------YRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH-h-h-----------ccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhh
Confidence 456778888888888887776542 0 0 001111122211111 123345667788999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHH-HHHHHHH
Q 048751 727 VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVI-SYNQVMACFATNGQLR-QCGELLH 804 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~-~A~~~~~ 804 (1004)
+.+|+...++.++..+.|.-+...-+.+|...|+++.|+..|+++++. .|+.. +-+.|+.+--+..+.. ...++|.
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999984 46644 3444444444444333 3467777
Q ss_pred HHHH
Q 048751 805 EMLT 808 (1004)
Q Consensus 805 ~~~~ 808 (1004)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 7754
No 237
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.50 E-value=2 Score=42.86 Aligned_cols=183 Identities=15% Similarity=0.068 Sum_probs=103.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 048751 721 YAELGMVTEAESMFNDIREKGQV---DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLR 797 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 797 (1004)
-.+.|++++|.+.|+.+....|. ...+...++.++.+.+++++|+..+++.....+.-...-|...+.+++.--.++
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 44678899999999998887754 455677778888899999999999988887543333344555555444110000
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhh
Q 048751 798 QCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKA 877 (1004)
Q Consensus 798 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~ 877 (1004)
...-|.. -..+|..-+++.++..|...=. ..|......+...
T Consensus 124 ------------~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya-------------~dA~~~i~~~~d~ 165 (254)
T COG4105 124 ------------DVTRDQS-------------AARAAFAAFKELVQRYPNSRYA-------------PDAKARIVKLNDA 165 (254)
T ss_pred ------------ccccCHH-------------HHHHHHHHHHHHHHHCCCCcch-------------hhHHHHHHHHHHH
Confidence 0000000 0112233333333333322100 0000000000000
Q ss_pred hccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 878 EAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ-GLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 878 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
=..-=..+++-|.+.|.+-.|..-+++|++. .-.+ -...+..|..+|.+.|..++|.+.-+-+.
T Consensus 166 ----LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 166 ----LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred ----HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 0001123567888999999999999999885 1111 23466777788999999999988877664
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.43 E-value=0.21 Score=50.02 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQV---DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL-RD-VISYNQVM 787 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~~~~l~ 787 (1004)
.|+.-++ +.+.|++.+|...|....+..|. .+.++..|+.++...|++++|..+|..+.+.-.. |- +.++-.|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4554444 34556677777777777777754 3456667777777777777777777777664211 11 45666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC
Q 048751 788 ACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777777777777777654
No 239
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.36 E-value=0.043 Score=38.46 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMY 753 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 753 (1004)
++..+...|.+.|++++|+++|+++.+..|.|+..|..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45667778888888888888888888888888777776653
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.25 E-value=0.53 Score=42.44 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=51.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQV---DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFAT 792 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 792 (1004)
-.....+.|++++|.+.|+.+....|. ...+...++.+|.+.|++++|+..+++.++..+.-..+-|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 344455678888888888888887753 4556777888888888888888888888875432223445444555443
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=95.12 E-value=1.4 Score=47.90 Aligned_cols=80 Identities=10% Similarity=0.008 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
.+|.++.++..+.+.. |..+...+..++.-.++++.|..+|++....+|....+|...+....-.|+.++|.+.+++..
T Consensus 321 ~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 321 QKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444445544432 444444455545555555555555555555555555555555555555555555555555554
Q ss_pred H
Q 048751 773 L 773 (1004)
Q Consensus 773 ~ 773 (1004)
+
T Consensus 400 r 400 (458)
T PRK11906 400 Q 400 (458)
T ss_pred c
Confidence 4
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.44 Score=50.38 Aligned_cols=140 Identities=14% Similarity=0.050 Sum_probs=100.9
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048751 612 VIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGC 691 (1004)
Q Consensus 612 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 691 (1004)
-.+.|.+.|++..|...|++.... -. |...-+.++...... .-..++..+..++.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhh
Confidence 357899999999999999987652 00 111111122211111 122356777888899999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHH
Q 048751 692 LEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEA-IDAAEE 770 (1004)
Q Consensus 692 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~ 770 (1004)
+..|++..+..+..+.. |......-..+|...|+++.|+..|+++.+..|.|-.+-..++.+-.+...+.+. .++|..
T Consensus 273 ~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887654 6766667788999999999999999999999999988888888777766665544 567777
Q ss_pred HHH
Q 048751 771 MKL 773 (1004)
Q Consensus 771 ~~~ 773 (1004)
|..
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 764
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=2.8 Score=41.11 Aligned_cols=202 Identities=15% Similarity=0.077 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYK 756 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 756 (1004)
..|.....+|....++++|...+.+..+ +.+.+...|. ...-++.|.-+.+++.+. +.-...|+.-..+|.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kl-sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKL-SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHH
Confidence 3466666777888888888887777664 2222322221 112234444444443332 112234455556777
Q ss_pred hcCCHHHHHHHHHHHHH--CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcH
Q 048751 757 TMGMLDEAIDAAEEMKL--SGLLRD--VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPI 832 (1004)
Q Consensus 757 ~~g~~~~A~~~~~~~~~--~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 832 (1004)
..|..+.|-..+++.-+ .+..|+ ...|..-+......++...|.+++.+ +...+.+..+..
T Consensus 103 E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk---------------~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK---------------CSRVLVRLEKFT 167 (308)
T ss_pred HhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH---------------hhhHhhhhHHhh
Confidence 88877777666665432 123344 22344444444444444444444433 334455556666
Q ss_pred HHHHHHHhHhhcc---CCc--hhhhHHHH--HHHHHhhhHhhhhHHHHHHhh---hccCCchhHHHHHHHHHhcCChHHH
Q 048751 833 EAVKQLQSSYQEV---KPY--ASEAIITS--VYSVVGLNALALGTCETLIKA---EAYLDSFIYNVAIYAFKSSGKNDKA 902 (1004)
Q Consensus 833 ~A~~~l~~~~~~~---~~~--~~~~~~~~--l~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 902 (1004)
+|...+.+-..-. ... .--.+++. ++....++..|...++.--+. ..+.+..+...|+.+|-. |+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~-gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE-GDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-CCHHHH
Confidence 6655544332211 111 11122232 233445666677776653322 223355566666666643 555544
Q ss_pred H
Q 048751 903 L 903 (1004)
Q Consensus 903 ~ 903 (1004)
-
T Consensus 247 ~ 247 (308)
T KOG1585|consen 247 K 247 (308)
T ss_pred H
Confidence 3
No 244
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=0.52 Score=48.02 Aligned_cols=153 Identities=14% Similarity=0.061 Sum_probs=98.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHH
Q 048751 653 ATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDT----VASNTMISLYAELGMVT 728 (1004)
Q Consensus 653 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~ 728 (1004)
..|+..+|...++++.+. .+.|...+..--.+|...|+.+.-...++++... ..++. ++-..+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 356667777777777664 4456666666667777777777777777776643 12232 22233444556778888
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 729 EAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS---GLLRDVISYNQVMACFATNGQLRQCGELLHE 805 (1004)
Q Consensus 729 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 805 (1004)
+|++.-++..+.++.|.-+-.+....+.-.|++.++.++..+-... +.-.-...|-...-.+...+.++.|+++|++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 8888888888887777777777888888888888887776654321 1101123344445556667888888888876
Q ss_pred HH
Q 048751 806 ML 807 (1004)
Q Consensus 806 ~~ 807 (1004)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 53
No 245
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.94 E-value=9 Score=44.66 Aligned_cols=146 Identities=22% Similarity=0.228 Sum_probs=73.1
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHH----H-HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHH
Q 048751 621 QLSNAVDLFHEMRRAGVEPNEVVYGSLIN----G-FAATGKVEEALQYFRMMRE-------CGLWANQIVLTSLIKAYSK 688 (1004)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~ 688 (1004)
+...|.++++...+.| +...-..+.. + +....+.+.|+.+|+.+.+ .|. .....-+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhc
Confidence 3567888888777765 3322222222 2 3455678888888887766 332 2233444555544
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--hc
Q 048751 689 IG-----CLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL---GMVTEAESMFNDIREKGQVDAVSFAAMMYLYK--TM 758 (1004)
Q Consensus 689 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~ 758 (1004)
.. +.+.|..++....+.|.. +... .+...+..- .+...|.++|......|......+..+..... ..
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcC
Confidence 22 445566666666555432 2222 222222221 23556666666666655443333333322222 22
Q ss_pred CCHHHHHHHHHHHHHCC
Q 048751 759 GMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~~~ 775 (1004)
-+.+.|..++.+.-+.|
T Consensus 378 r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCHHHHHHHHHHHHHcc
Confidence 34555666666655555
No 246
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.94 E-value=5.7 Score=41.62 Aligned_cols=101 Identities=11% Similarity=0.025 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGM---VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMAC 789 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 789 (1004)
+...++.+|...+. .++|..+++.+....+..+..+..-+..+.+.++.+++.+.+.+|...-..+ ...+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~-e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS-ESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc-cchHHHHHHH
Confidence 45566777776665 4456666666666666666677666666767778888888888887652212 2233333332
Q ss_pred H---HHcCCHHHHHHHHHHHHHCCCCCCh
Q 048751 790 F---ATNGQLRQCGELLHEMLTQKLLPDN 815 (1004)
Q Consensus 790 ~---~~~g~~~~A~~~~~~~~~~~~~p~~ 815 (1004)
+ ... ....|...+..++...+.|..
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 2 332 234555555555444444443
No 247
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=9.5 Score=43.88 Aligned_cols=99 Identities=14% Similarity=0.032 Sum_probs=56.9
Q ss_pred cCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcC---CHHHHHHHHHHhhhcC
Q 048751 425 VGLFPDSVTQRA-----ILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEG---LLHQAKIIFKKCQLDG 496 (1004)
Q Consensus 425 ~g~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 496 (1004)
.|+..+..-|.. +|.-+...+.+..|+++-+.+...-..- ...+.....-+.+.. +.+.+..+-+++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 455555555543 5666777788888888776664332222 455666666665542 222333333333222
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048751 497 GLSSKTLAAIIDVYAEKGLWAEAETVFYG 525 (1004)
Q Consensus 497 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 525 (1004)
-.+...+..++.....+|+.+-|..+.+.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 23344566777777778888888887754
No 248
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=3 Score=42.48 Aligned_cols=50 Identities=20% Similarity=0.198 Sum_probs=24.2
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 617 ARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMM 667 (1004)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 667 (1004)
...|+..+|..+|+...... +-+...--.++.+|...|+.+.|..++..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34455555555555554432 222333444555555555555555555544
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.55 E-value=5.7 Score=39.76 Aligned_cols=202 Identities=12% Similarity=0.094 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048751 746 VSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR--DVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFT 823 (1004)
Q Consensus 746 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 823 (1004)
..+..-+..-.+.|++++|.+.|+.+....+.- ...+...++.++.+.+++++|+..+++.+..-......-|...+.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 344444555678899999999999998754211 145666777888899999999999998876522212223333333
Q ss_pred HHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHH
Q 048751 824 ILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKAL 903 (1004)
Q Consensus 824 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 903 (1004)
++.. +... ..... ...-..+|...+++++..- |.+..+ .+|.
T Consensus 115 gLs~----------~~~i-~~~~r------------Dq~~~~~A~~~f~~~i~ry-PnS~Ya--------------~dA~ 156 (254)
T COG4105 115 GLSY----------FFQI-DDVTR------------DQSAARAAFAAFKELVQRY-PNSRYA--------------PDAK 156 (254)
T ss_pred HHHH----------hccC-Ccccc------------CHHHHHHHHHHHHHHHHHC-CCCcch--------------hhHH
Confidence 3321 0000 00000 0111124666677777664 333332 2233
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCc-H---HHHHHHHHHHHhcCChhHHHHHHHHH
Q 048751 904 NTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPN-E---NLFKAVIDAYRNANREDLADLACQEM 979 (1004)
Q Consensus 904 ~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~m 979 (1004)
.....+... + ...=..+.+-|.+.|.+..|..-++.+... -|+ . ...-.+..+|...|-.++|.+..+-+
T Consensus 157 ~~i~~~~d~-L---A~~Em~IaryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 157 ARIVKLNDA-L---AGHEMAIARYYLKRGAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHH-H---HHHHHHHHHHHHHhcChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 322222210 0 011134566788999999888888888643 233 2 35567788999999999999999999
Q ss_pred HhhcCCCCCCch
Q 048751 980 RTAFESPEHDDS 991 (1004)
Q Consensus 980 ~~~~~~~~~~~~ 991 (1004)
..+++..++-.+
T Consensus 231 ~~N~p~s~~~~~ 242 (254)
T COG4105 231 GANYPDSQWYKD 242 (254)
T ss_pred HhcCCCCcchhh
Confidence 988776655443
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.55 E-value=1.7 Score=49.37 Aligned_cols=115 Identities=18% Similarity=0.148 Sum_probs=79.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHhcCCHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEGGPDTVASNT-MISLYAELGMVTEAESMFNDIREKG----QVDAVSFAAMMYLYKTMGMLDE 763 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 763 (1004)
....+.|.++++.+.+.- |+...|.. -...+...|++++|++.|++..... ......+-.++..+.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 456788888888888753 45544433 3466777899999999999765422 2344567778888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCH-------HHHHHHHHHH
Q 048751 764 AIDAAEEMKLSGLLRDVISYNQVM-ACFATNGQL-------RQCGELLHEM 806 (1004)
Q Consensus 764 A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~ 806 (1004)
|...|.++.+..- -....|..+. .++...|+. ++|.++|.+.
T Consensus 324 A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 324 AAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 9999999998542 2333443333 344567777 7777887776
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.54 E-value=0.73 Score=40.09 Aligned_cols=89 Identities=13% Similarity=0.022 Sum_probs=60.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCC
Q 048751 719 SLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV---ISYNQVMACFATNGQ 795 (1004)
Q Consensus 719 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~ 795 (1004)
-++...|+.+.|++.|.+.....|..+.+||.-..++.-+|+.++|++=+++.++..-.... ..|..-...|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 35677888888888888888888888888888888888888888888888887764211121 122233334455566
Q ss_pred HHHHHHHHHHHH
Q 048751 796 LRQCGELLHEML 807 (1004)
Q Consensus 796 ~~~A~~~~~~~~ 807 (1004)
-+.|..=|...-
T Consensus 131 dd~AR~DFe~AA 142 (175)
T KOG4555|consen 131 DDAARADFEAAA 142 (175)
T ss_pred hHHHHHhHHHHH
Confidence 666555555543
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.53 E-value=1.1 Score=50.01 Aligned_cols=156 Identities=17% Similarity=0.209 Sum_probs=101.8
Q ss_pred HHHcCCHhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 048751 616 YARLGQLSNAVDLFHEMR-RAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEG 694 (1004)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 694 (1004)
..-.|+++.+.++.+.-. -..+ | ....+.++.-+.+.|..+.|+++..+-.. -.+...+.|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHH
Confidence 344678888776665211 1111 2 44577788888888999988887544321 2344567899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 695 AKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 695 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
|.++.+. ..+...|..|.+...+.|+++-|++.|++... +..|.-.|...|+.+.-.++.+.....
T Consensus 337 A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 337 ALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 8887643 24777999999999999999999999988765 567788888999988888888877776
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 775 GLLRDVISYNQVMACFATNGQLRQCGELLHE 805 (1004)
Q Consensus 775 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 805 (1004)
|- ++....++.-.|+.++..+++.+
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 62 45555666677888887776654
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=3.4 Score=42.10 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=24.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 722 AELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEM 771 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 771 (1004)
...|++.+|..+|.......+.+......++.+|...|+.+.|..++..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34444555555555555444444444444555555555555555554444
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=2.3 Score=43.59 Aligned_cols=151 Identities=13% Similarity=0.001 Sum_probs=102.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HH--HHHHHHHHHcCC
Q 048751 720 LYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVI--SY--NQVMACFATNGQ 795 (1004)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~--~~l~~~~~~~g~ 795 (1004)
.+.-.|+..+|...++++.+..|.|..++.---.++.-.|+.+.-...++++..+ ..+|.. +| ..+.-++...|-
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3456788899999999999999999999998889999999999988888888764 235543 33 234445677889
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCc---hhhhHHHHH--HHHHhhhHhhhhH
Q 048751 796 LRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPY---ASEAIITSV--YSVVGLNALALGT 870 (1004)
Q Consensus 796 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~---~~~~~~~~l--~~~~~~~~~A~~~ 870 (1004)
+++|.+.-++..+-+ +.|......+...+...|+..++.++.+...+.-... ....+|... +...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999988888775432 2344455667777788888888888877654432211 112333321 2333455556665
Q ss_pred HH
Q 048751 871 CE 872 (1004)
Q Consensus 871 ~~ 872 (1004)
|+
T Consensus 270 yD 271 (491)
T KOG2610|consen 270 YD 271 (491)
T ss_pred HH
Confidence 55
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.41 E-value=0.92 Score=50.53 Aligned_cols=154 Identities=17% Similarity=0.128 Sum_probs=75.3
Q ss_pred HHccCCHHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 048751 371 CGSHGNLSEAEALFC--MMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQ 448 (1004)
Q Consensus 371 ~~~~g~~~~A~~l~~--~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 448 (1004)
..-.|+++++.++.+ ++.. .+ +..-.+.+++.+-+.|..+.|+++-..-.. -.....+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHH
Confidence 335678888777775 2221 11 134466677777777777777665432211 122223344444
Q ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh
Q 048751 449 EAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRD 528 (1004)
Q Consensus 449 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 528 (1004)
.| .++.++. .++..|..|++...++|+++-|++.|.+..+
T Consensus 336 ~A-----------------------------------~~~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 336 IA-----------------------------------LEIAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HH-----------------------------------HHHCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HH-----------------------------------HHHHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 44 3332221 2445666666777777777777776666544
Q ss_pred hcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 048751 529 LVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLA 595 (1004)
Q Consensus 529 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 595 (1004)
|..|+-.|.-.|+.+.-.++.+.....|- ++....++.-.|+.++..+++.
T Consensus 376 ----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 376 ----------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ----------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 55666666677776666666665555442 3334444444455555555543
No 256
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.35 E-value=11 Score=42.34 Aligned_cols=184 Identities=9% Similarity=-0.033 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048751 640 NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMIS 719 (1004)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (1004)
+..+|...+.--...|+++.+.-+|+...-- +..=...|-..+.-....|+.+-|..++....+-..+..+.+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4577888888888899999998888887542 112234555666666666888888888777665444323322222222
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHCCCCCCHHHHHHHHHH-----HH
Q 048751 720 LYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAID---AAEEMKLSGLLRDVISYNQVMAC-----FA 791 (1004)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~p~~~~~~~l~~~-----~~ 791 (1004)
..-..|+++.|..+++.+.+..|.-...-..-+....+.|+.+.+.. ++..... |. -+......+.-- +.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~-~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GK-ENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cc-cCcchhHHHHHHHHHHHHH
Confidence 33455799999999999988876666666667777888888888873 3333322 11 122222222222 23
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 048751 792 TNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKK 827 (1004)
Q Consensus 792 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 827 (1004)
-.++.+.|..++.++.+. ++++...|..++.....
T Consensus 453 i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 453 IREDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred HhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 357888888888888654 45555556555554443
No 257
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.34 E-value=0.49 Score=42.26 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=68.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh---------------CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048751 168 NVIHYNIVLRALGRAQKWDELRLRWIEMAK---------------NGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKL 232 (1004)
Q Consensus 168 ~~~~~~~li~~l~~~~~~~~a~~~~~~m~~---------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 232 (1004)
|..++..++.++++.|+.+.+..+++.... ....|+..+..+++.+|+.+|++..|+.+.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 345778899999999999999998876543 12457888999999999999999999999999754
Q ss_pred -cCCCCChhhHHHHHHHHH
Q 048751 233 -RGIFPDEVTMNTVVRVLK 250 (1004)
Q Consensus 233 -~g~~p~~~~~~~l~~~~~ 250 (1004)
.++..+...|..|++-..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 678878889999998543
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.33 E-value=3.3 Score=45.29 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=73.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048751 654 TGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESM 733 (1004)
Q Consensus 654 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 733 (1004)
...+.+|.+++++..+.|- ..+. +....+..-..++........+-..+-..+..++.+.|+.++|.+.
T Consensus 213 A~Ti~Eae~l~rqAvkAgE----~~lg-------~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~ 281 (539)
T PF04184_consen 213 ASTIVEAEELLRQAVKAGE----ASLG-------KSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKM 281 (539)
T ss_pred ccCHHHHHHHHHHHHHHHH----Hhhc-------hhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHH
Confidence 3457888888888776531 1111 0000001111122222323333444445677778888999999999
Q ss_pred HHHHHHcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 048751 734 FNDIREKGQV--DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD--VISYNQVM 787 (1004)
Q Consensus 734 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~ 787 (1004)
+.++.+..|. .......|+.++...+.+.++..++.+-.+... |. ...|+..+
T Consensus 282 ~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaAL 338 (539)
T PF04184_consen 282 FRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAAL 338 (539)
T ss_pred HHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHH
Confidence 9998877654 445778888999999999999888888754333 44 34455544
No 259
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.32 E-value=13 Score=45.22 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCC--ChhHHHHHHHHHHH
Q 048751 538 EYNVMIKAYGKSK--LYDKAFSLFKVMKN 564 (1004)
Q Consensus 538 ~~~~li~~~~~~g--~~~~A~~l~~~m~~ 564 (1004)
....+|.+|.+.+ .+++|+....+...
T Consensus 792 ~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 792 FNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3445667777766 56666666666554
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.26 E-value=0.11 Score=36.33 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 048751 884 FIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLV 925 (1004)
Q Consensus 884 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~ 925 (1004)
.+|..++.+|...|++++|+++|+++++ ..| |...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--LDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHHHHHhh
Confidence 3577788888888888888888888887 467 455555543
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.24 E-value=0.67 Score=46.57 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=28.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQ---VDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
|..++...|++++|..+|..+.+..| .-+.++.-++.+..+.|+.++|...|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44455555555555555555544442 2334444455555555555555555555544
No 262
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.14 E-value=0.051 Score=35.42 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=25.6
Q ss_pred HHHHHhhhccCCchhHHHHHHHHHhcCChHHHH
Q 048751 871 CETLIKAEAYLDSFIYNVAIYAFKSSGKNDKAL 903 (1004)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 903 (1004)
|+++++.. |.++.+|+.|+..|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666 558889999999999999998886
No 263
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.06 E-value=0.067 Score=34.88 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=26.7
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048751 734 FNDIREKGQVDAVSFAAMMYLYKTMGMLDEAI 765 (1004)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 765 (1004)
|++.++..|.++.+|+.++..|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56777888888888888888888888888875
No 264
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=6.5 Score=38.42 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=7.5
Q ss_pred cCCHHHHHHHHHHH
Q 048751 724 LGMVTEAESMFNDI 737 (1004)
Q Consensus 724 ~g~~~~A~~~~~~~ 737 (1004)
.+.+++|.++|.+.
T Consensus 27 ~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 27 SNKYEEAAELYERA 40 (288)
T ss_pred CcchHHHHHHHHHH
Confidence 34556665555544
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.90 E-value=0.77 Score=39.95 Aligned_cols=92 Identities=16% Similarity=0.063 Sum_probs=60.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHH--HHHHHHHHHHcCCCh
Q 048751 475 MYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVV--EYNVMIKAYGKSKLY 552 (1004)
Q Consensus 475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~ 552 (1004)
++...|+++.|++.|.+.+...|..+.+|+.-+..+.-+|+.++|.+-+.+..+..|...-.. +|-.-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 455667777777777777777777777777777777777777777777777776655442221 233333345566777
Q ss_pred hHHHHHHHHHHHCC
Q 048751 553 DKAFSLFKVMKNLG 566 (1004)
Q Consensus 553 ~~A~~l~~~m~~~g 566 (1004)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77777776666655
No 266
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.80 E-value=0.46 Score=47.20 Aligned_cols=104 Identities=13% Similarity=0.228 Sum_probs=60.1
Q ss_pred CchhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 048751 324 RLTSTYNTLIDLYGKA-----GRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKT 398 (1004)
Q Consensus 324 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 398 (1004)
++-.+|-..+..+... +.++--...+..|.+.|++-|..+|+.|++.+-+.. +.|...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv- 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV- 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH-
Confidence 3455677776666543 445656667788888888888888888888765421 111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 048751 399 YNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNM 446 (1004)
Q Consensus 399 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 446 (1004)
+....-.|- .+-+-+++++++|...|+.||..+-..|++++.+.+-
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111111 1223456666666666666666666666666665554
No 267
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.79 E-value=0.28 Score=49.98 Aligned_cols=95 Identities=16% Similarity=0.094 Sum_probs=76.5
Q ss_pred HHHHHHHHhCCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 153 IRVFEFFKSQKDYVPN--VIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHM 230 (1004)
Q Consensus 153 ~~~f~~~~~~~~~~~~--~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 230 (1004)
.+|++|+..++.+--. ..++..++..+...|+++.+...++++.... +-+...|..|+.+|.+.|+...|+..|+++
T Consensus 135 ~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 135 DRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 4577777654322111 2377889999999999999999999999877 778899999999999999999999999998
Q ss_pred Hh-----cCCCCChhhHHHHHHH
Q 048751 231 KL-----RGIFPDEVTMNTVVRV 248 (1004)
Q Consensus 231 ~~-----~g~~p~~~~~~~l~~~ 248 (1004)
.+ .|+.|...+.......
T Consensus 214 ~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 214 KKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHhhhhcCCCccHHHHHHHHHH
Confidence 65 6888888877666555
No 268
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.73 E-value=3.6 Score=39.58 Aligned_cols=182 Identities=14% Similarity=0.055 Sum_probs=114.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHH
Q 048751 755 YKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIE 833 (1004)
Q Consensus 755 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 833 (1004)
|-..|-+.-|..=|.+.+. +.|+ +.+||-|.--+...|+++.|.+.|+...+.+..-+-... .-.-++.-.|++.-
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l-NRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL-NRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHh-ccceeeeecCchHh
Confidence 4444555555555666665 5577 678999998999999999999999998764322222222 22223456799999
Q ss_pred HHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHH-HHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048751 834 AVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCE-TLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ 912 (1004)
Q Consensus 834 A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 912 (1004)
|.+-+...++..|.++-..+|-.+-...-+-.+|..-+. +.... |..-|-..+..|.- |+.. -..+++++..
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a- 224 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKA- 224 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHh-
Confidence 999999999999998888888766655555556654443 33322 33344333333322 1111 1123344432
Q ss_pred CCCCC-------HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 048751 913 GLEPD-------IVTCINLVGCYGKAGLVEGVKRIHSQLKY 946 (1004)
Q Consensus 913 g~~pd-------~~t~~~l~~~~~~~g~~~~A~~~~~~~~~ 946 (1004)
+-+-+ ..||-.|..-+...|+.++|..+++-...
T Consensus 225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 11111 24777788888889999999999887654
No 269
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.49 E-value=4.6 Score=37.08 Aligned_cols=115 Identities=14% Similarity=0.119 Sum_probs=77.3
Q ss_pred cCCChHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 048751 132 ENLSPKEQTVVLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLV 211 (1004)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 211 (1004)
..++++.+...+...+.+.....+++++.... ..+...+|.+|..+++.. ..++...+.. ..+......++
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~ 76 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVG 76 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHH
Confidence 34556666666666677889999999987653 367778999999999764 3344444442 12345566688
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc-CChhHHHHHHHH
Q 048751 212 DVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEV-GEFDSADRFYKD 264 (1004)
Q Consensus 212 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 264 (1004)
+.|.+.+.++++.-++.++.. |...+..+... ++.+.|.+++.+
T Consensus 77 ~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 77 KLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 888888989888888877632 22233334444 778888877664
No 270
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.47 E-value=2.4 Score=38.32 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=34.3
Q ss_pred HHHHhhhHhhhhHHHHHHhhhc--cCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 858 YSVVGLNALALGTCETLIKAEA--YLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 858 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
....|++++|++.++.+...-+ +-...+.-.|+.+|.+.|++++|+..+++.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4566677777777776666532 12234456666777777777777777777766
No 271
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.30 E-value=22 Score=42.20 Aligned_cols=48 Identities=15% Similarity=0.101 Sum_probs=30.9
Q ss_pred HHcCCHHHHHHHHHHHHHcC---CC------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048751 722 AELGMVTEAESMFNDIREKG---QV------DAVSFAAMMYLYKTMGMLDEAIDAAE 769 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~---~~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 769 (1004)
+-.+++..|....+.+.+.. +. .+..+...+-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677888888888777653 11 13334444445566788888888886
No 272
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.29 E-value=5.7 Score=36.50 Aligned_cols=84 Identities=13% Similarity=0.175 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 048751 173 NIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEV 252 (1004)
Q Consensus 173 ~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 252 (1004)
..++..+.+.+....+...++.+.+.+ ..+...++.++..|++.+ ..+.++.++. ..+.+....+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 456666666667777777777766665 345556777777776553 2233333331 12333444455555555
Q ss_pred CChhHHHHHHHH
Q 048751 253 GEFDSADRFYKD 264 (1004)
Q Consensus 253 g~~~~A~~~~~~ 264 (1004)
+.++++.-++.+
T Consensus 83 ~l~~~~~~l~~k 94 (140)
T smart00299 83 KLYEEAVELYKK 94 (140)
T ss_pred CcHHHHHHHHHh
Confidence 555555554443
No 273
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.07 E-value=10 Score=39.85 Aligned_cols=83 Identities=14% Similarity=0.355 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCC-
Q 048751 657 VEEALQYFRMMRECGLWANQIVLTSLIKAYSK--IG----CLEGAKQVYEKMKEMEG---GPDTVASNTMISLYAELGM- 726 (1004)
Q Consensus 657 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~- 726 (1004)
+++.+.+++.|.+.|..-+..+|.+....... .. ....|..+|+.|++..+ .++...+..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455667777777776666555443222222 11 23556777777776654 3344444444332 2222
Q ss_pred ---HHHHHHHHHHHHHcC
Q 048751 727 ---VTEAESMFNDIREKG 741 (1004)
Q Consensus 727 ---~~~A~~~~~~~~~~~ 741 (1004)
.+.++.+|+.+.+.+
T Consensus 156 e~l~~~~E~~Y~~L~~~~ 173 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAG 173 (297)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 344555555555544
No 274
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=92.99 E-value=1.4 Score=39.35 Aligned_cols=48 Identities=8% Similarity=0.028 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHH
Q 048751 706 EGGPDTVASNTMISLYAELGMVTEAESMFNDIREKG--QVDAVSFAAMMY 753 (1004)
Q Consensus 706 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 753 (1004)
...|+..+..+++.+|+..|++..|.++.+...+.. +.+...|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 345677777777777777777777777777766655 234455555554
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.88 E-value=5.1 Score=37.05 Aligned_cols=72 Identities=17% Similarity=0.097 Sum_probs=47.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCC
Q 048751 722 AELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACF-ATNGQ 795 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~ 795 (1004)
.+.++.+++..+++.+.-..|..+..-..-+..+...|+|.+|+.+|+++.+.. |.......|+..| ...|+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD 93 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC
Confidence 355678888888888877777777776667777778888888888888876644 4433333444333 33444
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.86 E-value=7.5 Score=36.07 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=47.6
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHhcCCHH
Q 048751 688 KIGCLEGAKQVYEKMKEMEGGPDTV-ASNTMISLYAELGMVTEAESMFNDIREKGQVDAV----SFAAMMYLYKTMGMLD 762 (1004)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~ 762 (1004)
+.++.++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-...+.... .-..-...+...|.|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3444455555555555444432221 1112223344445555555555554443311110 1112223344444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 763 EAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 763 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+.....+-+-..+-..-...-..|.-+-.+.|++.+|...|.++..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4444444433322211122233343344444455555444444443
No 277
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.66 E-value=0.94 Score=42.35 Aligned_cols=95 Identities=16% Similarity=0.017 Sum_probs=56.8
Q ss_pred HHHHHHHHhHhhccCCchh-hhHHHHHHH----------HHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCC--
Q 048751 832 IEAVKQLQSSYQEVKPYAS-EAIITSVYS----------VVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGK-- 898 (1004)
Q Consensus 832 ~~A~~~l~~~~~~~~~~~~-~~~~~~l~~----------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 898 (1004)
+.|.+..+..+..+|.+.. ...|+..+. ....+++|++-+++++... |....++..++.+|...+.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555444 233443321 2245566788888888886 3366788889988876653
Q ss_pred ---------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 899 ---------NDKALNTFMKMLDQGLEPDIVTCINLVGCYG 929 (1004)
Q Consensus 899 ---------~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~ 929 (1004)
+++|.+.|++..+ .+|+...|..-+....
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA 124 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence 5667777777766 6899999988877664
No 278
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.50 E-value=20 Score=39.58 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGLW-ANQIVLTSLIKAYSKIGCLEGAKQVYEKMK 703 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 703 (1004)
..+..++-+.|+.++|++.+++|.+.... .+..+...|+.++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 44555666667777777777777654322 123355667777777777777777776653
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.21 E-value=0.28 Score=32.50 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 885 IYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 885 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
+|+.|+.+|.+.|++++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 477889999999999999999998653
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.13 E-value=1.5 Score=44.96 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL-----SGLLRDVISYNQV 786 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l 786 (1004)
.++..++..+...|+++.+...++++....|.+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45667888888889999999999999999999999999999999999999999988888765 4677766665544
Q ss_pred HHH
Q 048751 787 MAC 789 (1004)
Q Consensus 787 ~~~ 789 (1004)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 281
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.91 E-value=1.2 Score=44.27 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048751 624 NAVDLFHEMRRAGVEPNEVVYGSLINGFAATGK 656 (1004)
Q Consensus 624 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 656 (1004)
-+++++++|...|+.||-.+-..|++++.+.+-
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 355666666666666666666666666655543
No 282
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.78 E-value=30 Score=40.08 Aligned_cols=100 Identities=10% Similarity=0.010 Sum_probs=55.7
Q ss_pred HCCCCcCHHHHHH-----HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcC
Q 048751 354 KSGVAVDTITFNT-----MIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGN--INAALRYYWKIREVG 426 (1004)
Q Consensus 354 ~~g~~p~~~t~~~-----ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g 426 (1004)
..|++.+..-|.. ++.-+...+.+..|.++-..+-..-.+ +...|.....-+.+..+ -+++++..++=...-
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4477666665543 456677778888888887766432112 14556666666665532 223333332222221
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 427 LFPDSVTQRAILHILCQRNMVQEAEAVII 455 (1004)
Q Consensus 427 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 455 (1004)
. -...+|..+..--...|+.+-|..+++
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle 531 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLE 531 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHh
Confidence 2 234556666666667777777776664
No 283
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.91 E-value=23 Score=37.11 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 048751 573 TYNSLVQMFAGGDLM---GQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRA 635 (1004)
Q Consensus 573 t~~~ll~~~~~~~~~---~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 635 (1004)
++..++.++...+.. ++|..+++.+.... +-.+.++..-+..+.+.++.+.+.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344555555555443 34444555554321 112333333445555566667777777776654
No 284
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.79 E-value=39 Score=39.51 Aligned_cols=129 Identities=17% Similarity=0.232 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-CCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 048751 538 EYNVMIKAYGKSK-----LYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAG-GDLMGQAVDLLAEMQGAGFKPQCLTFSS 611 (1004)
Q Consensus 538 ~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 611 (1004)
..+.+..+|.+.. +.+.|+.++.+.-..|. |+...+-..+..... ..+...|.++|...-..|..+ .+-.
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHH
Confidence 3444555555532 55667888877777664 344433333322222 245678888888887776322 2222
Q ss_pred HHHHHH----HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048751 612 VIAAYA----RLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGL 672 (1004)
Q Consensus 612 li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 672 (1004)
+..+|. -..+...|..++++..+.| .|-..--...+..+.. +.++.+.-.+..+.+.|.
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 222222 2236777888888877776 3332222222333333 666666666666666554
No 285
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.45 E-value=0.46 Score=30.83 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048751 884 FIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD 917 (1004)
Q Consensus 884 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 917 (1004)
.+|..++.+|...|++++|+..|+++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3688888999999999999999999887 4554
No 286
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.32 E-value=42 Score=39.17 Aligned_cols=54 Identities=19% Similarity=0.007 Sum_probs=36.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHhc
Q 048751 211 VDVYGKAGLIKEALLWIKHMKLRGIFP---DEVTMNTVVRVLKEVGEFDSADRFYKDWC 266 (1004)
Q Consensus 211 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 266 (1004)
++++.+.+.+++|+.+.+..... .| -...+..+|+-|.-.|++++|....-+|.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 56777788888887776654433 33 23356677777777888888877766654
No 287
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.18 E-value=55 Score=40.29 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV--ISYNQVMACF 790 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~ 790 (1004)
.|.+..+-+...+.+++|.-.|+..-+. ..-+.+|...|+|.+|+.+..++... .|. .+-..|+.-+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl--------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL--------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH--------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 4445555566677777777777655331 23456777888888888887776531 222 2235677777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHH
Q 048751 791 ATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQ 839 (1004)
Q Consensus 791 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~ 839 (1004)
...+++-+|-++..+.... | ...+..|+++..+++|+....
T Consensus 1010 ~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHH
Confidence 8888888888887776432 1 233444555566666655443
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.16 E-value=10 Score=34.49 Aligned_cols=53 Identities=19% Similarity=0.053 Sum_probs=37.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 723 ELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 723 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
..++.+++..+++.+.-..|.....-..-+..+...|+|++|+.+|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 35677777777777777766666666666666777777777777777777654
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.15 E-value=9.9 Score=35.21 Aligned_cols=46 Identities=9% Similarity=-0.078 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhh
Q 048751 481 LLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGK 526 (1004)
Q Consensus 481 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 526 (1004)
+.+++..++..+..-.|..+..-..-+..+...|++.+|+.+|+++
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3333333333333333333333333333444444444444444443
No 290
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.89 E-value=9.2 Score=45.15 Aligned_cols=87 Identities=15% Similarity=0.192 Sum_probs=41.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhc---
Q 048751 334 DLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRI-SPDTKTYNILLSLYADV--- 409 (1004)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~li~~~~~~--- 409 (1004)
..+.-.|.++.|++.+-+ ..+...|.+.+...+.-+.-.+-.+... ..+..... .|...-+..||..|++.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445567999999998866 2233556666666555443222111111 22221110 11125577888888764
Q ss_pred CCHHHHHHHHHHHHHc
Q 048751 410 GNINAALRYYWKIREV 425 (1004)
Q Consensus 410 g~~~~A~~~~~~m~~~ 425 (1004)
.+..+|+++|--+...
T Consensus 341 td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 341 TDPREALQYLYLICLF 356 (613)
T ss_dssp T-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHHc
Confidence 5788888888777654
No 291
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.77 E-value=14 Score=32.74 Aligned_cols=60 Identities=15% Similarity=0.336 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
.-++.+.+.|+-++-.+++..+.+.+.+++.....++.+|.+.|+..++-+++.++-++|
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334444455555555555555444444445555555555555555555555555554444
No 292
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.64 E-value=18 Score=33.99 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=10.5
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCC
Q 048751 633 RRAGVEPNEVVYGSLINGFAATGK 656 (1004)
Q Consensus 633 ~~~g~~p~~~~~~~li~~~~~~g~ 656 (1004)
.+.+++|+...+..+++.+.+.|+
T Consensus 21 ~~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 21 NQHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCC
Confidence 334444444444444444444444
No 293
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.30 E-value=19 Score=33.62 Aligned_cols=124 Identities=15% Similarity=0.106 Sum_probs=64.0
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH--HHHHHcCCH
Q 048751 617 ARLGQLSNAVDLFHEMRRAGVEPNEV-VYGSLINGFAATGKVEEALQYFRMMRECGLWANQI-VLTSLI--KAYSKIGCL 692 (1004)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li--~~~~~~g~~ 692 (1004)
.+.+..++|+.-|..+.+.|...-.. ..........+.|+...|...|+++-.....|-.. -...|- -.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34556666666666666654332211 11222334455666666666666665433333222 111111 123456666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREK 740 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (1004)
++.....+.+...+.+.....-.+|.-+-.+.|++.+|.+.|..+...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666666665544333333334455555666677777777777766653
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.29 E-value=2.8 Score=40.21 Aligned_cols=101 Identities=13% Similarity=0.017 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHHH----
Q 048751 884 FIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD--IVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFK---- 957 (1004)
Q Consensus 884 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---- 957 (1004)
.++..++.-|.+.|+.++|++.|.++.+....|. ...+..++..+...|++..+...+.++......++.....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4688899999999999999999999998766664 3467788899999999999999988775432232221111
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHHhhcC
Q 048751 958 -AVIDAYRNANREDLADLACQEMRTAFE 984 (1004)
Q Consensus 958 -~l~~~~~~~g~~~~A~~~~~~m~~~~~ 984 (1004)
.-+-.+...|++.+|-..+-.....+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 112234567889888887776654443
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.14 E-value=0.66 Score=29.97 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048751 885 IYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD 917 (1004)
Q Consensus 885 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 917 (1004)
+|..++..|...|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 577788888888888888888888876 4553
No 296
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.13 E-value=40 Score=37.23 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=67.3
Q ss_pred CCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHC-CCCCCHHHHH
Q 048751 709 PDTVAS-NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG--MLDEAIDAAEEMKLS-GLLRDVISYN 784 (1004)
Q Consensus 709 ~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~-~~~p~~~~~~ 784 (1004)
++..++ +.+++.+.+.|-+.+|+..+..+....|++...|..++..-..+- +..-+..+++.+... | .|+..|.
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~ 534 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWM 534 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHH
Confidence 444443 567788888899999999999999988888888888876543221 256667777777653 4 5666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 785 QVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 785 ~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
-.+.-=...|+.+.+-.++.+.++
T Consensus 535 ~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 535 DYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHhhccCCCcccccHHHHHHHH
Confidence 555555567777766666666543
No 297
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.84 E-value=5.3 Score=37.92 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=34.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 719 SLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 719 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
.++.+.+.++.|+.-..+.++.+|....+...-+.+|.+...+++|+.=|+++.+.
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 44555666666666666666666655555555566666666666666666666653
No 298
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.77 E-value=0.94 Score=29.92 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 748 FAAMMYLYKTMGMLDEAIDAAEEM 771 (1004)
Q Consensus 748 ~~~l~~~~~~~g~~~~A~~~~~~~ 771 (1004)
|..|+.+|.+.|++++|+.++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455556666666666666666553
No 299
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.73 E-value=59 Score=38.65 Aligned_cols=129 Identities=13% Similarity=0.121 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC--C--CCcCHHHHHHH-HHHHHccCCHHHHHHHHHHHHHCC---CCCCHHHHH
Q 048751 329 YNTLIDLYGKAGRLQDAANVFAEMLKS--G--VAVDTITFNTM-IYTCGSHGNLSEAEALFCMMEESR---ISPDTKTYN 400 (1004)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g--~~p~~~t~~~l-l~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~~~~ 400 (1004)
...++..+.+.+... |...+++.++. + ..+-...|.-+ +..+...+++..|.+.++.+...- -.|-..++-
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 345677777777666 88888876653 1 12222333333 222333478999999888776431 233444555
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 048751 401 ILLSLYA--DVGNINAALRYYWKIREVGL---------FPDSVTQRAILHILC--QRNMVQEAEAVIIEME 458 (1004)
Q Consensus 401 ~li~~~~--~~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 458 (1004)
.++.+.. +.+..+++.+..+++..... .|-..+|..++..++ ..|+++.+...++++.
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5554443 44666777777776643211 234567777777665 5677777776666553
No 300
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.59 E-value=15 Score=35.00 Aligned_cols=102 Identities=20% Similarity=0.133 Sum_probs=64.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 649 NGFAATGKVEEALQYFRMMRECGLWAN----QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
+-+.+.|++++|..-|...++.-+... .+.|..-..++.+.+.++.|+.-..+.++.++. ...+...-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 345567777777777777766532211 223444455677788888888877777776543 223333345577888
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAM 751 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l 751 (1004)
..+++|+.-|.++.+..|....+-...
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 888888888888888876654444333
No 301
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.55 E-value=62 Score=38.64 Aligned_cols=58 Identities=17% Similarity=-0.024 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHH--hcCChhHHHHHHHH
Q 048751 886 YNVAIYAFKSSGKNDKALNTFMKMLDQGL----EPDIVTCINLVGCYG--KAGLVEGVKRIHSQ 943 (1004)
Q Consensus 886 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~----~pd~~t~~~l~~~~~--~~g~~~~A~~~~~~ 943 (1004)
+..|+.++...|+.++|....+++..... .++-.+-..++.... ..|+.+++..+..+
T Consensus 621 ~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 621 LSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 34778888999999999999999886422 224334344444332 56888777776654
No 302
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.38 E-value=4.4 Score=38.11 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 048751 797 RQCGELLHEMLTQKLLPDNGTFKVLFTIL 825 (1004)
Q Consensus 797 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 825 (1004)
++|.+.|++... ..|+...|+.-+...
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 344444444432 356666666554443
No 303
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.03 E-value=44 Score=36.39 Aligned_cols=65 Identities=17% Similarity=0.091 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048751 395 DTKTYNILLSLYADVGNINAALRYYWKIREVGLFP---DSVTQRAILHILCQRNMVQEAEAVIIEMEK 459 (1004)
Q Consensus 395 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 459 (1004)
...+|..++..+.+.|.++.|...+.++...+... .....-.-+..+...|+..+|+..+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44577788888888888888888888877643211 233344445566677888888888877776
No 304
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.94 E-value=66 Score=38.24 Aligned_cols=253 Identities=8% Similarity=-0.042 Sum_probs=141.1
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048751 654 TGKVEEALQYFRMMRECG-LWANQ--IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEA 730 (1004)
Q Consensus 654 ~g~~~~A~~~~~~m~~~g-~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 730 (1004)
..+.+.|..++....... ..+.. .++..+.......+...+|...++....... +......-+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~--~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ--STSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC--CcHHHHHHHHHHHHccCHHHH
Confidence 456688989998875433 22221 2333443333333335677777666543322 333344445555588999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHC
Q 048751 731 ESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELL-HEMLTQ 809 (1004)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~ 809 (1004)
...+..|.........-..-++.++...|+.++|...|+++... . +|..++. ..+.|..-. ...- ......
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~---~fYG~LA-a~~Lg~~~~-~~~~~~~~~~~ 403 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R---GFYPMVA-AQRLGEEYP-LKIDKAPKPDS 403 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---CcHHHHH-HHHcCCCCC-CCCCCCCchhh
Confidence 99998886655556666777888888899999999999997431 2 2332222 112232100 0000 000000
Q ss_pred CCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhcc--CCchhHH
Q 048751 810 KLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAY--LDSFIYN 887 (1004)
Q Consensus 810 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ 887 (1004)
.+ +.. .....+..+...|...+|...+...... ........+..+....|.++.++....+....+.. --+..|.
T Consensus 404 ~~-~~~-~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~ 480 (644)
T PRK11619 404 AL-TQG-PEMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWN 480 (644)
T ss_pred hh-ccC-hHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchH
Confidence 00 000 1122334566778889998888877765 33333455556667777777777666543221100 0123466
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 048751 888 VAIYAFKSSGKNDKALNTFMKMLDQGLEPDIV 919 (1004)
Q Consensus 888 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 919 (1004)
..+..+...-..+.++-+----+|.++.|+..
T Consensus 481 ~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 481 DEFRRYTSGKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCc
Confidence 67777777667777765555555677777643
No 305
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.32 E-value=26 Score=33.59 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=9.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 048751 751 MMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 751 l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
|.......|.+|+|++.++...
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccc
Confidence 3444444444444444444433
No 306
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.96 E-value=23 Score=33.88 Aligned_cols=56 Identities=11% Similarity=-0.036 Sum_probs=27.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 048751 889 AIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKY 946 (1004)
Q Consensus 889 l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~~ 946 (1004)
|.+.....|.+|+|+..++...+.++. ......-.+++...|+.++|+.-++....
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHH
Confidence 344555555555555555554432221 22233344455555555555555555543
No 307
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=86.93 E-value=50 Score=35.78 Aligned_cols=72 Identities=22% Similarity=0.221 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFA 791 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 791 (1004)
.|+.-|...|++.+|......+---.-.....+.+++.+.-+.|+-..-+.++++.-..|. .|-+.+-.+|.
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~ 585 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhh
Confidence 4666777778888887777655433334566777777777777777766677666665443 34444444443
No 308
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.90 E-value=74 Score=37.72 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=15.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC
Q 048751 891 YAFKSSGKNDKALNTFMKMLDQGLEP 916 (1004)
Q Consensus 891 ~~~~~~g~~~~A~~~~~~m~~~g~~p 916 (1004)
.-+.+.|++++|++.++++ ++-|
T Consensus 513 f~~~~~g~~~~AL~~i~~L---~liP 535 (613)
T PF04097_consen 513 FDLYHAGQYEQALDIIEKL---DLIP 535 (613)
T ss_dssp HHHHHTT-HHHHHHHHHHT---T-S-
T ss_pred HHHHHcCCHHHHHHHHHhC---CCCC
Confidence 3457889999999887765 5788
No 309
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.69 E-value=8.6 Score=36.92 Aligned_cols=61 Identities=15% Similarity=0.246 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 608 TFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN--EVVYGSLINGFAATGKVEEALQYFRMMR 668 (1004)
Q Consensus 608 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 668 (1004)
.+..+..-|++.|+.+.|++.|.++.+....+. ...+-.+|......+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455666667777777777777777666543333 3445556666666666666666655543
No 310
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.42 E-value=72 Score=37.11 Aligned_cols=63 Identities=5% Similarity=0.041 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHH--HHHHccCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHH
Q 048751 344 DAANVFAEMLKSGVAVDTITFNTMI--YTCGSHGNLSEAEALFCMME-ESRISPDTKTYNILLSLYA 407 (1004)
Q Consensus 344 ~A~~~~~~m~~~g~~p~~~t~~~ll--~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~~~~~li~~~~ 407 (1004)
+.+...+.|.+..-.| .....+|+ ..|...|++++|++.--... .-.+.++...+.+++.-|.
T Consensus 41 d~l~~IE~lyed~~F~-er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~i 106 (929)
T KOG2062|consen 41 DSLPKIESLYEDETFP-ERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCI 106 (929)
T ss_pred hhHHHHHHHhccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHH
Confidence 3344444444433223 22333333 66778888888877644332 2335566666666655443
No 311
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.37 E-value=58 Score=36.03 Aligned_cols=101 Identities=8% Similarity=0.072 Sum_probs=53.2
Q ss_pred CCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHH
Q 048751 778 RDVISY-NQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITS 856 (1004)
Q Consensus 778 p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 856 (1004)
|+..++ +.++..+.+.|-..+|...+..+... .+|+...|...+..=.
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~------------------------------ 505 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEK------------------------------ 505 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHh------------------------------
Confidence 554444 55666667777777777777776532 3334434443332100
Q ss_pred HHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 857 VYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 857 l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
-...++ ..-+.+.|+.++..-. -|+..|...+..=...|+.+.+-.++.++.+
T Consensus 506 ~~~sc~-l~~~r~~yd~a~~~fg-~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 506 EQESCN-LANIREYYDRALREFG-ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hHhhcC-chHHHHHHHHHHHHhC-CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 001111 2223444454444322 3566666665555577777777777766654
No 312
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.94 E-value=2.4 Score=27.21 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 748 FAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 748 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
|..++.++...|++++|++.+++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444455555555555555555444
No 313
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.93 E-value=13 Score=36.55 Aligned_cols=117 Identities=12% Similarity=0.028 Sum_probs=70.6
Q ss_pred HhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHH
Q 048751 861 VGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIV-TCINLVGCYGKAGLVEGVKR 939 (1004)
Q Consensus 861 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~l~~~~~~~g~~~~A~~ 939 (1004)
.++++.|+..|-+.+... |..+.-|..-+.++.+..+|+.+..--.+.++ +.||.+ ..-.+..++.....+++|+.
T Consensus 23 ~k~y~~ai~~y~raI~~n-P~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICIN-PTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhhchHHHHHHHHHhcC-CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHH
Confidence 345556666666666654 22334456666677777778877777777666 677655 34445555666777777777
Q ss_pred HHHHH----HcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 940 IHSQL----KYGKMEPNENLFKAVIDAYRNANREDLADLACQEMR 980 (1004)
Q Consensus 940 ~~~~~----~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 980 (1004)
.+.++ +...+.+...++..|.++=...=...++.++.+++.
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 77665 234455566777777665444444455556555544
No 314
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=85.31 E-value=26 Score=31.07 Aligned_cols=57 Identities=18% Similarity=0.249 Sum_probs=24.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048751 649 NGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEME 706 (1004)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 706 (1004)
..+...|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444445555555555554432 12444445555555555555555555555554444
No 315
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.98 E-value=55 Score=34.48 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHHhcCC--hhHHHHHHHHHHcCCCCCcHHHHHHHH
Q 048751 900 DKALNTFMKMLDQGLEP-DI-VTCINLVGCYGKAGL--VEGVKRIHSQLKYGKMEPNENLFKAVI 960 (1004)
Q Consensus 900 ~~A~~~~~~m~~~g~~p-d~-~t~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~ 960 (1004)
+.+..+|+.+.+.|+.. |. .....++..+..... ...+.++++.+.+.++++....|..++
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 45555666666666655 22 233333332222222 235555666666666666655555544
No 316
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.84 E-value=2.2 Score=27.48 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 747 SFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 747 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
+|..++.+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555555555555555554
No 317
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.73 E-value=23 Score=36.37 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048751 153 IRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKN-GVLPTNNTYGMLVDVYGKAGLIKEALLWI 227 (1004)
Q Consensus 153 ~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 227 (1004)
.++.+.+.+..+-.++..+--.+|.+|++.++|....++|+..... +..-|...|...|......|+..-...+.
T Consensus 186 YEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 186 YEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 3444444433333444455555666666666666666666655543 33445555666666666666654444433
No 318
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.41 E-value=67 Score=34.97 Aligned_cols=65 Identities=14% Similarity=0.007 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048751 640 NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWA---NQIVLTSLIKAYSKIGCLEGAKQVYEKMKE 704 (1004)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 704 (1004)
...+|..++..+-+.|.++.|...+..+...+... .+.+...-++.+-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777777777888888877777776643111 233444445556667777777777776665
No 319
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.00 E-value=27 Score=31.88 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=8.1
Q ss_pred HHHHhcCCHHHHHHHHhhh
Q 048751 508 DVYAEKGLWAEAETVFYGK 526 (1004)
Q Consensus 508 ~~~~~~g~~~~A~~~~~~~ 526 (1004)
..+...|++++|..+|+++
T Consensus 52 ~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 52 WLLIARGNYDEAARILREL 70 (153)
T ss_pred HHHHHcCCHHHHHHHHHhh
Confidence 3334444444444444443
No 320
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.62 E-value=48 Score=32.74 Aligned_cols=21 Identities=10% Similarity=0.072 Sum_probs=13.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCC
Q 048751 790 FATNGQLRQCGELLHEMLTQK 810 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~~~ 810 (1004)
-+..+++.+|+++|++.....
T Consensus 164 aa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 355677777777777765443
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.54 E-value=8.5 Score=42.98 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHH
Q 048751 409 VGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKII 488 (1004)
Q Consensus 409 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 488 (1004)
.|+++.|..++..+. ...-+.++.-+-+.|..++|+++- +|+. .-.....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHHHH
Confidence 455555555443332 223445556666667766666543 1211 112233455666666555
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 048751 489 FKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKR 527 (1004)
Q Consensus 489 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 527 (1004)
..+. .+..-|..|++...+.|++..|.+.|....
T Consensus 660 a~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 660 AVEA-----NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred HHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 4443 233344555555555555555555554433
No 322
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.54 E-value=40 Score=31.76 Aligned_cols=36 Identities=11% Similarity=0.177 Sum_probs=22.1
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHH
Q 048751 346 ANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAE 381 (1004)
Q Consensus 346 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~ 381 (1004)
.+++..+.+.++.|+...+..++..+.+.|++....
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ 49 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH 49 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 445555556666666666666777776666654433
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.22 E-value=13 Score=41.74 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSL 405 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 405 (1004)
..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.. |...-+
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~ 730 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLA 730 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHH
Confidence 34567777777777777777776655543 344555555566655555555555554421 222334
Q ss_pred HHhcCCHHHHHHHHHH
Q 048751 406 YADVGNINAALRYYWK 421 (1004)
Q Consensus 406 ~~~~g~~~~A~~~~~~ 421 (1004)
|...|+++++++++.+
T Consensus 731 ~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 731 YFLSGDYEECLELLIS 746 (794)
T ss_pred HHHcCCHHHHHHHHHh
Confidence 5556666666665543
No 324
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.08 E-value=1.9 Score=27.77 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 885 IYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 885 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
+|..++..|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 577788888888888888888888876
No 325
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.48 E-value=9.3 Score=39.44 Aligned_cols=95 Identities=18% Similarity=0.099 Sum_probs=50.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048751 647 LINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGM 726 (1004)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 726 (1004)
-.+-|.++|++++|+..|...+.... -|++++..-..+|.+...+..|..=....+..+- .-...|..-+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhh
Confidence 35566777777777777766655421 2666666666677777666666555554443221 112223333333333445
Q ss_pred HHHHHHHHHHHHHcCCC
Q 048751 727 VTEAESMFNDIREKGQV 743 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~~~~ 743 (1004)
..+|.+-++..++..|.
T Consensus 181 ~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhHHHHHhhCcc
Confidence 55555555555554444
No 326
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.20 E-value=64 Score=32.44 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 391 RISPDTKTYNILLSL-YADVGNINAALRYYWKIREVGLFPDSV---TQRAILHILCQRNMVQEAEAVIIEME 458 (1004)
Q Consensus 391 g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~ 458 (1004)
+-.||+..-|..-.. -.+..++++|+.-|++..+........ ...-+|....+.|++++..+.+.+|.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 345665443322211 123456777888887777643222222 22334455555666666555555543
No 327
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.16 E-value=26 Score=38.32 Aligned_cols=78 Identities=15% Similarity=0.058 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH-------CCCCCCH-----------HHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 048751 885 IYNVAIYAFKSSGKNDKALNTFMKMLD-------QGLEPDI-----------VTCINLVGCYGKAGLVEGVKRIHSQLKY 946 (1004)
Q Consensus 885 ~~~~l~~~~~~~g~~~~A~~~~~~m~~-------~g~~pd~-----------~t~~~l~~~~~~~g~~~~A~~~~~~~~~ 946 (1004)
.||.|+-...+.|.+.-+..+|.++++ .|++|.. .+|++ .-.+...|+.-.|.+-|.....
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHH
Confidence 456666666666666666666665552 3555521 13332 2245566777666666655431
Q ss_pred CCCCCcHHHHHHHHHHHH
Q 048751 947 GKMEPNENLFKAVIDAYR 964 (1004)
Q Consensus 947 ~~~~p~~~~~~~l~~~~~ 964 (1004)
-+-.++++|-.|..+|.
T Consensus 364 -vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 364 -VFHRNPRLWLRLAECCI 380 (696)
T ss_pred -HHhcCcHHHHHHHHHHH
Confidence 23345677777777664
No 328
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.66 E-value=3.1 Score=28.30 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 884 FIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 884 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
.+++.|+..|...|++++|..++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4688899999999999999999998875
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.21 E-value=1.3e+02 Score=35.43 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=13.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 048751 647 LINGFAATGKVEEALQYFRMMR 668 (1004)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~m~ 668 (1004)
|+..|...+++..|++++-...
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 5556666666666666555543
No 330
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.62 E-value=9.2 Score=39.46 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048751 611 SVIAAYARLGQLSNAVDLFHEMRRAGVEP-NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKI 689 (1004)
Q Consensus 611 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 689 (1004)
--.+-|.+.|.+++|+..|...... .| |.+++..-..+|.+..++..|..-....+..+- .-...|..-+.+-...
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESL 178 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHH
Confidence 3467799999999999999887764 45 889999999999999999888877776665321 1112233333333344
Q ss_pred CCHHHHHHHHHHHHhC
Q 048751 690 GCLEGAKQVYEKMKEM 705 (1004)
Q Consensus 690 g~~~~A~~~~~~~~~~ 705 (1004)
|+..+|.+=++...+.
T Consensus 179 g~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLAL 194 (536)
T ss_pred hhHHHHHHhHHHHHhh
Confidence 5666666666665554
No 331
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.37 E-value=1.1e+02 Score=34.06 Aligned_cols=178 Identities=14% Similarity=0.126 Sum_probs=97.0
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048751 570 DECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLIN 649 (1004)
Q Consensus 570 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 649 (1004)
|.....+++..+..+-...-...+..+|+..| -+-..|..++.+|... ..++-..+|+++.+..+ .|++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44555666666666666666677777776644 4555666677777666 44566667776666532 23444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 048751 650 GFAATGKVEEALQYFRMMRECGLWAN------QIVLTSLIKAYSKIGCLEGAKQVYEKMKEM-EGGPDTVASNTMISLYA 722 (1004)
Q Consensus 650 ~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 722 (1004)
-|.+ ++...+..+|..+...-+ |. ...|..+...- ..+.+....+...+.+. |...-...+.-+-.-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI-~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFI-PRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 4444 666666677766655432 21 11333333211 23445555555554432 22223333444445556
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 048751 723 ELGMVTEAESMFNDIREKGQVDAVSFAAMMYLY 755 (1004)
Q Consensus 723 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (1004)
...++++|++++..+.+.+..|..+-..++.-+
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 666677777777777666655555555554433
No 332
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.10 E-value=0.54 Score=43.56 Aligned_cols=53 Identities=6% Similarity=0.083 Sum_probs=26.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 403 LSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVII 455 (1004)
Q Consensus 403 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 455 (1004)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444455555555555555544433445555555555555555444444443
No 333
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.62 E-value=83 Score=31.67 Aligned_cols=258 Identities=17% Similarity=0.123 Sum_probs=126.1
Q ss_pred CCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCC--CHHHHHHHHHHHHHcCC
Q 048751 725 GMVTEAESMFNDIREKGQV----DAVSFAAMMYLYKTMGMLDEAIDAAEEMKL---SGLLR--DVISYNQVMACFATNGQ 795 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p--~~~~~~~l~~~~~~~g~ 795 (1004)
.++++|+.-|++..+..+. -..+.-.++..+.+.|++++.+..+.+++. ..+.. ...+.|++++......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 4677777777777665421 233556677788888888888877777653 11111 23455666666665555
Q ss_pred HHHHHHHHHHHHHC-----CCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCch-------h------hhHHHHH
Q 048751 796 LRQCGELLHEMLTQ-----KLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYA-------S------EAIITSV 857 (1004)
Q Consensus 796 ~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~-------~------~~~~~~l 857 (1004)
.+--..+|+.-++. +-..-..|-..+...|...|.+.+-.+.+++......... + ..+-..+
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 54444444433221 1111112233444455555555444444444443221110 0 1122345
Q ss_pred HHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHH-----HhcCChHHHHHHHHHHHH-C--CCCCCHHHH---HHHHH
Q 048751 858 YSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAF-----KSSGKNDKALNTFMKMLD-Q--GLEPDIVTC---INLVG 926 (1004)
Q Consensus 858 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~m~~-~--g~~pd~~t~---~~l~~ 926 (1004)
|...++...-..+|++.+.....-........|+-| .+.|++++|-.-|-++.+ . .-.|-..|+ ..|..
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLAN 280 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 666777766677777776653322222333444433 466788887654444332 1 123433332 22332
Q ss_pred HHHhcCChhHHHHHHH--HHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCC
Q 048751 927 CYGKAGLVEGVKRIHS--QLKYGKMEPNENLFKAVIDAYRNANREDLADLACQEMRTAFESPEH 988 (1004)
Q Consensus 927 ~~~~~g~~~~A~~~~~--~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 988 (1004)
.+.++| +.-|+ .+.-+.-.|+.-....|+.+|-+ ++.-+..++++.=++.-..-+|
T Consensus 281 MLmkS~-----iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~~IM~DpF 338 (440)
T KOG1464|consen 281 MLMKSG-----INPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRSNIMDDPF 338 (440)
T ss_pred HHHHcC-----CCCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhccccccHH
Confidence 222221 11111 11111223334456677878754 5666667666654444333333
No 334
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.55 E-value=5.1 Score=25.37 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=10.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 048751 751 MMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 751 l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
++.++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 335
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.26 E-value=74 Score=35.06 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 887 NVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYG 929 (1004)
Q Consensus 887 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~ 929 (1004)
...+-.|.+.|+.-.|.+.|.+.... +..++..|.-|..+|.
T Consensus 339 YNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 339 YNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred HhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 34566677778888887777777653 3456777777777775
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.72 E-value=6 Score=26.77 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 747 SFAAMMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 747 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
+++.|+..|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555544
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.69 E-value=27 Score=33.75 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=34.6
Q ss_pred hhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHH
Q 048751 866 LALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ---GLEPDIVTCINLVGCYGKAGLVEGV 937 (1004)
Q Consensus 866 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g~~pd~~t~~~l~~~~~~~g~~~~A 937 (1004)
+|++.|-++-..+.-.++.....|+.-|. .-+.++|+.++.++++. +-.+|+..+..|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444332233333444443333 34555666665555542 2234555555566555555555554
No 338
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.69 E-value=1.3e+02 Score=33.50 Aligned_cols=178 Identities=11% Similarity=0.073 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHH
Q 048751 395 DTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMK 474 (1004)
Q Consensus 395 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 474 (1004)
|.....+++..+...-...-...+..+|...| -+-..|..++++|..+ ..+.-..+++++.+..+. |...-..++.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44556666777776666677777777777744 4556677777777766 556666677766665442 3333333333
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHc
Q 048751 475 MYINEGLLHQAKIIFKKCQLDGGLS------SKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGK 548 (1004)
Q Consensus 475 ~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 548 (1004)
.| ..++.+.+..+|.++.....+. ...|..+...- ..+.+.-..+...+....|...-.+.+..+-.-|..
T Consensus 141 ~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 33 3366677777776665433221 11222222211 234455555555555555555566666666677777
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 549 SKLYDKAFSLFKVMKNLGTWPDECTYNSLVQM 580 (1004)
Q Consensus 549 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 580 (1004)
..++++|++++....+..-+ |..+-..++.-
T Consensus 218 ~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 78888888888777665432 44444444443
No 339
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.61 E-value=32 Score=35.45 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 656 KVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMK 703 (1004)
Q Consensus 656 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 703 (1004)
+.++++.++..-++.|+.||..+++.+++.+.+.+++.+|.++.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555554444
No 340
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.58 E-value=2.5 Score=26.90 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 886 YNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 886 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
+..++.++...|++++|.+.|+++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44566777777788888888777776
No 341
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.43 E-value=8.3 Score=39.41 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=37.0
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 048751 550 KLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGA 600 (1004)
Q Consensus 550 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 600 (1004)
-+.++++.++..=++-|+.||.++++.+++.+.+.+++.+|..+...|...
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 355677777777777777778778887888777777777777777666543
No 342
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.29 E-value=97 Score=31.82 Aligned_cols=60 Identities=18% Similarity=0.120 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
+++.....|..+|.+.+|.++.++....+|.+...|-.++..+...|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 345566778888999999999999888888888888889999988888777777777664
No 343
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.41 E-value=25 Score=29.28 Aligned_cols=46 Identities=7% Similarity=0.107 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 694 GAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIRE 739 (1004)
Q Consensus 694 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 739 (1004)
++.+-++.+...+.-|++.+..+-+.+|.+.+++..|.++|+.+..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3334444444444445555555555555555555555555554443
No 344
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=75.02 E-value=3.2e+02 Score=37.12 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=27.5
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhh
Q 048751 817 TFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAE 878 (1004)
Q Consensus 817 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~ 878 (1004)
+|....+...++|..+.|...+-.+.+...+ ....-.+-+++..|+...|+..+++.++..
T Consensus 1672 ~wLqsAriaR~aG~~q~A~nall~A~e~r~~-~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1672 CWLQSARIARLAGHLQRAQNALLNAKESRLP-EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhcccc-hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 3444444444555555555544444443311 111222334455555555555555555443
No 345
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.72 E-value=22 Score=34.59 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG--LLRDVISYNQVMAC 789 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~ 789 (1004)
+..+..+.+.+.+.+|+...+.-.+..|.+...-..++..|+-.|+|++|..-++-.-+.. ..+...+|..+|.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566677777777777777777777777777777777777777777776665554422 11234556666554
No 346
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=74.48 E-value=1.3e+02 Score=32.32 Aligned_cols=118 Identities=8% Similarity=0.059 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT---MGMLDEAIDAAE 769 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~ 769 (1004)
+.-+.+++++.+.++ .+...+..++..+.+..+.++..+.++++....|.+...|...+..... .-.+++...+|.
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 344556666665533 3555666666666777777777777777777777777777666654443 123445555544
Q ss_pred HHHHC------CC------CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048751 770 EMKLS------GL------LRD-----VISYNQVMACFATNGQLRQCGELLHEMLTQKL 811 (1004)
Q Consensus 770 ~~~~~------~~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 811 (1004)
+.+.. +. .++ ...+..+...+...|..+.|..+++-+++-++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 43321 11 011 12233344455678888889888888877664
No 347
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.38 E-value=16 Score=35.46 Aligned_cols=67 Identities=19% Similarity=0.133 Sum_probs=51.9
Q ss_pred HHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHH
Q 048751 858 YSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP----DIVTCINLVGC 927 (1004)
Q Consensus 858 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p----d~~t~~~l~~~ 927 (1004)
+...+...+++...+.-++.. |-|...-..++..|+-.|+|++|..-++..-+ +.| ...+|..++.+
T Consensus 11 LL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHHHH
Confidence 455667778888888777765 44777888899999999999999988887765 444 45678888765
No 348
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=74.24 E-value=1.3e+02 Score=32.28 Aligned_cols=80 Identities=5% Similarity=-0.015 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHH
Q 048751 727 VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFAT---NGQLRQCGELL 803 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~ 803 (1004)
.+.-+.+++++.+.+|.+...+..++..+.+..+.++..+.++++..... -+...|...+..... .-.+++....|
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-GSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 55677888888888898999999999999999999999999999988642 246677777765543 22455666666
Q ss_pred HHHH
Q 048751 804 HEML 807 (1004)
Q Consensus 804 ~~~~ 807 (1004)
.+.+
T Consensus 126 ~~~l 129 (321)
T PF08424_consen 126 EKCL 129 (321)
T ss_pred HHHH
Confidence 5553
No 349
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.12 E-value=1.4e+02 Score=36.38 Aligned_cols=27 Identities=26% Similarity=0.604 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 328 TYNTLIDLYGKAGRLQDAANVFAEMLK 354 (1004)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (1004)
-|..|+..|...|+.++|+++|.+..+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 378888888888888999888888876
No 350
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=73.29 E-value=22 Score=29.61 Aligned_cols=63 Identities=10% Similarity=0.016 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048751 185 WDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRV 248 (1004)
Q Consensus 185 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 248 (1004)
.=++++-++.+...++.|++....+.+++|.|-+++.-|+.+|+..+.. +..+...|..++.-
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqe 85 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQE 85 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHH
Confidence 3367777888888888999999999999999999999999999988743 12234466666653
No 351
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.19 E-value=19 Score=40.23 Aligned_cols=100 Identities=13% Similarity=-0.011 Sum_probs=54.0
Q ss_pred CCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCC--chhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHH
Q 048751 811 LLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKP--YASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNV 888 (1004)
Q Consensus 811 ~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~--~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 888 (1004)
..|-+..++....-+.-.|++..|.+-++.++...|. +.....++.+....|.+.+|..++.+.+... ...+-++..
T Consensus 603 ~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~ 681 (886)
T KOG4507|consen 603 NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLS 681 (886)
T ss_pred CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHh
Confidence 4444444333333333456666666666665554432 2223334455555556666666666665554 224445566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 048751 889 AIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 889 l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
++++|....+.+.|++.|+.+.+
T Consensus 682 ~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 682 LGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred cchhHHHHhhhHHHHHHHHHHHh
Confidence 66666666667777766666665
No 352
>PRK09687 putative lyase; Provisional
Probab=73.10 E-value=1.3e+02 Score=31.59 Aligned_cols=73 Identities=10% Similarity=0.019 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048751 744 DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFT 823 (1004)
Q Consensus 744 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 823 (1004)
+..+....+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +|...+.++.+. .||...-...+.
T Consensus 205 ~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~ 275 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAID 275 (280)
T ss_pred ChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHH
Confidence 33444444445555544 33444444444322 1 123444555555553 455555555432 234444444444
Q ss_pred HH
Q 048751 824 IL 825 (1004)
Q Consensus 824 ~~ 825 (1004)
+|
T Consensus 276 a~ 277 (280)
T PRK09687 276 KL 277 (280)
T ss_pred HH
Confidence 33
No 353
>PRK09687 putative lyase; Provisional
Probab=72.72 E-value=1.3e+02 Score=31.53 Aligned_cols=136 Identities=10% Similarity=-0.035 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048751 640 NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIG-CLEGAKQVYEKMKEMEGGPDTVASNTMI 718 (1004)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (1004)
+..+-...+.++.+.++ .+++..+-.+.+. ++..+-...+.++...+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33333344444444443 3344444444332 33333344444443332 12233333333332 23444444445
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 719 SLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACF 790 (1004)
Q Consensus 719 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 790 (1004)
.++.+.|+ ..|...+-...+.+. .....+.++...|.. +|+..+.++.+.. ||..+-...+.++
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 55555554 234444433333221 123445555555553 4666666655432 4544444444443
No 354
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.24 E-value=23 Score=29.79 Aligned_cols=48 Identities=8% Similarity=0.108 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048751 694 GAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKG 741 (1004)
Q Consensus 694 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (1004)
+..+-++.+...+.-|++.+..+.+.+|.+.+++..|.++|+.+..+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~ 75 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC 75 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 344444444445555555555555555555555555555555555543
No 355
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.15 E-value=8.4 Score=24.65 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=10.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 715 NTMISLYAELGMVTEAESMFNDIRE 739 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~ 739 (1004)
..+...|.+.|++++|.+.|++..+
T Consensus 5 ~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 5 YNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344444444444444444444433
No 356
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.03 E-value=5.7 Score=23.85 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH
Q 048751 885 IYNVAIYAFKSSGKNDKALNTFM 907 (1004)
Q Consensus 885 ~~~~l~~~~~~~g~~~~A~~~~~ 907 (1004)
+...++.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34456666777777777766654
No 357
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.89 E-value=71 Score=31.80 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=26.8
Q ss_pred hhhHHHHHHhhhccC-----CchhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048751 867 ALGTCETLIKAEAYL-----DSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ 912 (1004)
Q Consensus 867 A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 912 (1004)
|++.|++..+....+ .......++....+.|+.++|.+.|.++...
T Consensus 144 Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 144 ALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 455555555443211 1233445566677777778888777777764
No 358
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=71.84 E-value=25 Score=29.56 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048751 187 ELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVL 249 (1004)
Q Consensus 187 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 249 (1004)
++++-++.+...++.|++....+.+++|.|-+++.-|+.+|+.++.. +.+....|..++.-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 56777788888888999999999999999999999999999988765 233333777776543
No 359
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=71.80 E-value=44 Score=27.77 Aligned_cols=64 Identities=16% Similarity=0.088 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q 048751 732 SMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR-DVISYNQVMACFATNGQ 795 (1004)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 795 (1004)
.-++...+.+|.|......+...+...|++++|++.+-++.+..... +...-..++..+...|.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34455556667788888888888888888888888777777654322 23444555555555444
No 360
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.69 E-value=1.6e+02 Score=32.33 Aligned_cols=118 Identities=8% Similarity=0.014 Sum_probs=63.7
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 048751 479 EGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSL 558 (1004)
Q Consensus 479 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 558 (1004)
.|++..|.+-+...+...+.++.........+...|.++.+...+...... ......+...++....+.|+++.|..+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 344555554444444444445544444555556666666666665544433 222233455666667777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 048751 559 FKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQG 599 (1004)
Q Consensus 559 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 599 (1004)
-..|....+. +...........-..|-++++...|.+...
T Consensus 380 a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 380 AEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 7777665543 333332222223344556667666666654
No 361
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.31 E-value=36 Score=33.00 Aligned_cols=19 Identities=5% Similarity=0.011 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHcCCHHH
Q 048751 780 VISYNQVMACFATNGQLRQ 798 (1004)
Q Consensus 780 ~~~~~~l~~~~~~~g~~~~ 798 (1004)
+..+.+|+..+.+.|+++.
T Consensus 178 ~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 178 PEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred HHHHHHHHHHHHHhcchhh
Confidence 3333333333433333333
No 362
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=70.45 E-value=1.2e+02 Score=31.41 Aligned_cols=126 Identities=9% Similarity=0.072 Sum_probs=88.1
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHh-cC-CHHHHHHHHHHHHh-CCCCCChhhHHHHHHHHH
Q 048751 139 QTVVLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGR-AQ-KWDELRLRWIEMAK-NGVLPTNNTYGMLVDVYG 215 (1004)
Q Consensus 139 ~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~-~~-~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~ 215 (1004)
+..+.+......+|+..|+........-.|..+-..+++.... .+ ......++.+-+.. .+..++..+-...+..++
T Consensus 134 Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~ 213 (292)
T PF13929_consen 134 YWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILA 213 (292)
T ss_pred HHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHH
Confidence 4555555556678888887543222345577777777777765 22 22222222222322 234677788889999999
Q ss_pred hcCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHHcCChhHHHHHHHH
Q 048751 216 KAGLIKEALLWIKHMKLR-GIFPDEVTMNTVVRVLKEVGEFDSADRFYKD 264 (1004)
Q Consensus 216 ~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 264 (1004)
..++|.+-.+.++..... +..-|...|..+|+...+.|+..-..++.++
T Consensus 214 ~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 214 ESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred hcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 999999999998887665 6777889999999999999998877777654
No 363
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.04 E-value=66 Score=32.70 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=29.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHHcCCHHHH
Q 048751 647 LINGFAATGKVEEALQYFRMMRECGLWANQIVLT-------SLIKAYSKIGCLEGA 695 (1004)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-------~li~~~~~~g~~~~A 695 (1004)
+.+-..+.+++++|+..+.++...|+..+..+.+ .+.+.|...|++...
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 4555566777888888888887777766654432 334444444544433
No 364
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=68.21 E-value=1.6e+02 Score=30.92 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 048751 729 EAESMFNDIREKGQVDAVSFAAMMYLYKT----MGMLDEAIDAAEEMKLSGL 776 (1004)
Q Consensus 729 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 776 (1004)
.|...|.++...+ +......+...|.. ..+.++|...|.+.-+.|.
T Consensus 173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 4555555555544 33344444443322 3356666666666666553
No 365
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=67.76 E-value=2.8e+02 Score=33.49 Aligned_cols=221 Identities=19% Similarity=0.087 Sum_probs=112.9
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHH
Q 048751 618 RLGQLSNAVDLFHEMRRAGVEPNE-------VVYGSLIN-GFAATGKVEEALQYFRMMREC----GLWANQIVLTSLIKA 685 (1004)
Q Consensus 618 ~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~~li~~ 685 (1004)
...++++|..++.++...-..|+. ..|+.|-. .....|+++.|.++.+..... -..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 456777777777766543212221 23443322 233467788888777766543 122344556667777
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHH---HH--HHHHHHcCC--HHHHHHHHHHHHHcC----CCC---HHHHHHH
Q 048751 686 YSKIGCLEGAKQVYEKMKEMEGGPDTVASN---TM--ISLYAELGM--VTEAESMFNDIREKG----QVD---AVSFAAM 751 (1004)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~l--~~~~~~~g~--~~~A~~~~~~~~~~~----~~~---~~~~~~l 751 (1004)
..-.|++++|..+.....+....-+...+. .+ ...+...|+ +.+.+..|....... +.. ...+..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 777888888888777665542222333332 22 233455663 344444455544432 221 1233334
Q ss_pred HHHHHhcCCHHHHHHH----HHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----ChhhHHHH
Q 048751 752 MYLYKTMGMLDEAIDA----AEEMKLSGLLRDVI--SYNQVMACFATNGQLRQCGELLHEMLTQKLLP----DNGTFKVL 821 (1004)
Q Consensus 752 ~~~~~~~g~~~~A~~~----~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l 821 (1004)
..++.+ ++.+..- ++-.......|-.. .+..|+......|+.++|...+.++......+ +..+-...
T Consensus 587 l~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 587 LRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 444433 3333322 22222222222222 22366777788888888888888875543322 22222222
Q ss_pred HHH--HHcCCCcHHHHHHHHhH
Q 048751 822 FTI--LKKGGFPIEAVKQLQSS 841 (1004)
Q Consensus 822 ~~~--~~~~g~~~~A~~~l~~~ 841 (1004)
+.. ....|+..+|...+.+.
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHhc
Confidence 222 33567777777666653
No 366
>PRK10941 hypothetical protein; Provisional
Probab=66.56 E-value=75 Score=32.87 Aligned_cols=61 Identities=10% Similarity=-0.001 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
+.+-.+|.+.++++.|+++.+.+....|.++.-+..-+.+|.+.|.+..|..=++..++..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 4566678888889999999888888888888888888888888888888888888877654
No 367
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.22 E-value=87 Score=31.18 Aligned_cols=82 Identities=11% Similarity=-0.032 Sum_probs=49.7
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 688 KIGCLEGAKQVYEKMKEMEGGPDTVA-SNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAID 766 (1004)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 766 (1004)
...+++.|+..|.+.+.. .|++.+ |+.=+-++.+..+++.+..-..+..+..|........+...+.....+++|+.
T Consensus 22 ~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 334556666655555442 344433 33344455566677777666666666666666666666677777777777777
Q ss_pred HHHHH
Q 048751 767 AAEEM 771 (1004)
Q Consensus 767 ~~~~~ 771 (1004)
.+.+.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 76665
No 368
>PRK11619 lytic murein transglycosylase; Provisional
Probab=65.43 E-value=3e+02 Score=32.90 Aligned_cols=137 Identities=7% Similarity=-0.007 Sum_probs=64.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 336 YGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAA 415 (1004)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 415 (1004)
..+.|++..+..+...+....+ ..-..|..|...+ .....++....+++-.. .+.....-...+..+.+.+++...
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La~~~~w~~~ 118 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANPT--LPPARSLQSRFVNELARREDWRGL 118 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHccCHHHH
Confidence 3466778777777666643211 1222333333322 12245544444443221 111112222333444556666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCH
Q 048751 416 LRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLL 482 (1004)
Q Consensus 416 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 482 (1004)
+.++.. ...+....-....++...|+.++|......+-..|.. .+.....++..+.+.|.+
T Consensus 119 ~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 119 LAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCC
Confidence 553311 1234444455566677777777776666665444432 233444444444444433
No 369
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=65.34 E-value=11 Score=22.93 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 885 IYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 885 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
+|..++..+...|++++|...+++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 466677777777777888777777665
No 370
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=65.26 E-value=2.2e+02 Score=31.38 Aligned_cols=86 Identities=16% Similarity=0.095 Sum_probs=41.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHH
Q 048751 407 ADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAK 486 (1004)
Q Consensus 407 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 486 (1004)
...|+++.+.+.+...... +.....+...+++...+.|++++|..+-+-|....++ ++..+....-..-..|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence 3455555555555433321 2223344555555555666666666665555554443 2322222222333345555555
Q ss_pred HHHHHhhh
Q 048751 487 IIFKKCQL 494 (1004)
Q Consensus 487 ~~~~~~~~ 494 (1004)
..|+++..
T Consensus 412 ~~wk~~~~ 419 (831)
T PRK15180 412 HYWKRVLL 419 (831)
T ss_pred HHHHHHhc
Confidence 55555543
No 371
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.75 E-value=1.8e+02 Score=30.08 Aligned_cols=28 Identities=18% Similarity=0.109 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 048751 497 GLSSKTLAAIIDVYAEKGLWAEAETVFY 524 (1004)
Q Consensus 497 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 524 (1004)
..++.....++..|.+.|++.+|+..|-
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 4567788888888999999888888774
No 372
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=64.66 E-value=54 Score=27.23 Aligned_cols=65 Identities=8% Similarity=-0.039 Sum_probs=37.5
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCC
Q 048751 487 IIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKL 551 (1004)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 551 (1004)
.-+++....+|.+..+...++..+...|++++|.+.+-.+........+...-..|+..+.-.|.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34555566777788888888888888888888888777665532122223334444444443333
No 373
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=64.35 E-value=10 Score=22.70 Aligned_cols=21 Identities=19% Similarity=0.004 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 048751 208 GMLVDVYGKAGLIKEALLWIK 228 (1004)
Q Consensus 208 ~~li~~~~~~g~~~~A~~~~~ 228 (1004)
..|..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555555555555555543
No 374
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.10 E-value=41 Score=37.71 Aligned_cols=150 Identities=13% Similarity=0.041 Sum_probs=93.3
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCH-HHHHH
Q 048751 429 PDSVTQRAILHILCQRN--MVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSS-KTLAA 505 (1004)
Q Consensus 429 p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~ 505 (1004)
|+..+..+++.-+...- .-+-+-.++..|. ....|--..++...-.+...|+...|.+.+..+....|... .....
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~ 647 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAIN-KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN 647 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH
Confidence 55555555544433221 2233334444443 33333333334334444567888888888877765554433 35667
Q ss_pred HHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 506 IIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFA 582 (1004)
Q Consensus 506 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 582 (1004)
|++...+.|...+|-.++.+..... .....++-.+..++....+++.|++.|++..+.... +...-+.|...-|
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~--~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN--SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc--ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 8888888888888888888777653 334456677888888889999999999988876543 4555566655544
No 375
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.06 E-value=3.8e+02 Score=32.95 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=25.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048751 685 AYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE 723 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 723 (1004)
.|+.....+-++..++.+....-.++....+.++..|..
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 345556667777777777765555566666666666654
No 376
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=61.09 E-value=68 Score=26.96 Aligned_cols=52 Identities=10% Similarity=0.054 Sum_probs=32.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 752 MYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 752 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
+..+...|+|++|..+.+.+ ..||...|..|. -.+.|-.+++...+.+|-..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhC
Confidence 44566778888887776665 347777776663 34566666666666665444
No 377
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.16 E-value=22 Score=24.83 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=19.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 048751 332 LIDLYGKAGRLQDAANVFAEMLKSG 356 (1004)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g 356 (1004)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5677888888888888888877643
No 378
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=60.09 E-value=3.2 Score=38.33 Aligned_cols=84 Identities=17% Similarity=0.256 Sum_probs=47.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048751 175 VLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGE 254 (1004)
Q Consensus 175 li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 254 (1004)
+|..+.+.+.+..+..+++.+...+...+....+.|+..|++.+..++....++ ..+.+-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence 455555566666666666666655544455566667777777666566555554 1122333455666666666
Q ss_pred hhHHHHHHHHh
Q 048751 255 FDSADRFYKDW 265 (1004)
Q Consensus 255 ~~~A~~~~~~~ 265 (1004)
+++|.-+|.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666666653
No 379
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=60.01 E-value=2.2e+02 Score=29.49 Aligned_cols=59 Identities=15% Similarity=0.076 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 048751 503 LAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMK 563 (1004)
Q Consensus 503 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 563 (1004)
+......|..+|.+.+|..+.+..... .+.+...|-.++..+...|+--.|.+.++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl--dpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL--DPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344456666666666666666666553 45555666667777777777666666666553
No 380
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.77 E-value=23 Score=24.73 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=13.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 048751 751 MMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 751 l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
++.+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 45555555555555555555554
No 381
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=58.95 E-value=1e+02 Score=26.34 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 727 VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
.++|..+.+-+...+.....+-.+-+..+...|+|++|+ ..-.. ...||...|-.| +-.+.|-.+++...+.++
T Consensus 22 H~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~AL---l~~~~-~~~pdL~p~~AL--~a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 22 HQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEAL---LLPQC-HCYPDLEPWAAL--CAWKLGLASALESRLTRL 95 (116)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHH---HHHTT-S--GGGHHHHHH--HHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHH---Hhccc-CCCccHHHHHHH--HHHhhccHHHHHHHHHHH
Confidence 455555555555444433334444445566666666661 11111 223666665554 234566666666666555
No 382
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=58.87 E-value=1.2e+02 Score=26.05 Aligned_cols=81 Identities=14% Similarity=0.166 Sum_probs=52.8
Q ss_pred hhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048751 146 QKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALL 225 (1004)
Q Consensus 146 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 225 (1004)
..+.++|..+.+|+....+ -...+--+.+..|.+.|+|.+|.. . ......||...|-+| +-.+.|.-+++..
T Consensus 19 ~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~ALl---~-~~~~~~pdL~p~~AL--~a~klGL~~~~e~ 90 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEALL---L-PQCHCYPDLEPWAAL--CAWKLGLASALES 90 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHHH---H-HTTS--GGGHHHHHH--HHHHCT-HHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHH---h-cccCCCccHHHHHHH--HHHhhccHHHHHH
Confidence 3457899999999997654 223344455666778899999922 2 222346777777666 5678999999999
Q ss_pred HHHHHHhcC
Q 048751 226 WIKHMKLRG 234 (1004)
Q Consensus 226 ~~~~m~~~g 234 (1004)
++.++...|
T Consensus 91 ~l~rla~~g 99 (116)
T PF09477_consen 91 RLTRLASSG 99 (116)
T ss_dssp HHHHHCT-S
T ss_pred HHHHHHhCC
Confidence 999887665
No 383
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.75 E-value=1.5e+02 Score=32.69 Aligned_cols=58 Identities=14% Similarity=0.024 Sum_probs=37.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH--HHcCCHHHHHHHHHHHHHC
Q 048751 751 MMYLYKTMGMLDEAIDAAEEMKLSGLLRDVI--SYNQVMACF--ATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 751 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~--~~~g~~~~A~~~~~~~~~~ 809 (1004)
.+..+...+++..|.++++.+... +.++.. .+..+..+| ...-++++|.+.++.....
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444566888888888888888876 433333 344444444 4566777788877776543
No 384
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=58.21 E-value=66 Score=27.04 Aligned_cols=80 Identities=10% Similarity=0.064 Sum_probs=58.1
Q ss_pred hcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 048751 147 KSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLW 226 (1004)
Q Consensus 147 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 226 (1004)
.+.++|.-+-+|+...... ...+--+.+..|...|+|++|..+.+.+ +.||...|-.| +-.+.|.-+++...
T Consensus 19 HcHqEA~tIAdwL~~~~~~--~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~r 90 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES--EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESR 90 (115)
T ss_pred hHHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHH
Confidence 3578899999999864311 3333344556677889999998876665 47888887766 45678888888888
Q ss_pred HHHHHhcC
Q 048751 227 IKHMKLRG 234 (1004)
Q Consensus 227 ~~~m~~~g 234 (1004)
+-+|...|
T Consensus 91 l~rla~sg 98 (115)
T TIGR02508 91 LNRLAASG 98 (115)
T ss_pred HHHHHhCC
Confidence 88887776
No 385
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=57.55 E-value=1.6e+02 Score=27.10 Aligned_cols=90 Identities=10% Similarity=0.093 Sum_probs=68.5
Q ss_pred CCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhcC
Q 048751 163 KDYVPNV--IHYNIVLRALGRAQKWDELRLRWIEMAKNGV-----LPTNNTYGMLVDVYGKAGL-IKEALLWIKHMKLRG 234 (1004)
Q Consensus 163 ~~~~~~~--~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g 234 (1004)
.++.++. ...|.++.-+...+++.-+..+++.+..-.. .-+...|.+++.+.+...- ---+..+|.-|++.+
T Consensus 31 ~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~ 110 (145)
T PF13762_consen 31 ENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND 110 (145)
T ss_pred cccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC
Confidence 4555544 4678888888888899998888888753211 2345679999999977666 456778999999988
Q ss_pred CCCChhhHHHHHHHHHHc
Q 048751 235 IFPDEVTMNTVVRVLKEV 252 (1004)
Q Consensus 235 ~~p~~~~~~~l~~~~~~~ 252 (1004)
.+++..-|..++.++.+-
T Consensus 111 ~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 111 IEFTPSDYSCLIKAALRG 128 (145)
T ss_pred CCCCHHHHHHHHHHHHcC
Confidence 999999999999987653
No 386
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=56.67 E-value=3.7e+02 Score=31.64 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 048751 361 TITFNTMIYTCGSHGNLSEAEALFCMME 388 (1004)
Q Consensus 361 ~~t~~~ll~~~~~~g~~~~A~~l~~~m~ 388 (1004)
..-|+ .+..+.-.|.++.|.+++....
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 56666 5666777899999999985543
No 387
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=56.04 E-value=85 Score=31.25 Aligned_cols=92 Identities=14% Similarity=0.132 Sum_probs=48.1
Q ss_pred hcCChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCChhH-------HHHHHHHHHcCC---CCC--cHHHH
Q 048751 895 SSGKNDKALNTFMKMLD----QGLEPD--IVTCINLVGCYGKAGLVEG-------VKRIHSQLKYGK---MEP--NENLF 956 (1004)
Q Consensus 895 ~~g~~~~A~~~~~~m~~----~g~~pd--~~t~~~l~~~~~~~g~~~~-------A~~~~~~~~~~~---~~p--~~~~~ 956 (1004)
....+++|++.|..++- .+..|. ...+.-+.|.|...|+.+. |.+.+.+..... ..+ +..+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34456666665555542 223333 2355556667766666543 333333332111 111 13444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhhcCCC
Q 048751 957 KAVIDAYRNANREDLADLACQEMRTAFESP 986 (1004)
Q Consensus 957 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 986 (1004)
..++....+.|+.++|.+.+.++-..+...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 556666777777777777777777655443
No 388
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=55.59 E-value=39 Score=27.00 Aligned_cols=47 Identities=15% Similarity=0.124 Sum_probs=35.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHH
Q 048751 895 SSGKNDKALNTFMKMLDQGLEP-D-IVTCINLVGCYGKAGLVEGVKRIH 941 (1004)
Q Consensus 895 ~~g~~~~A~~~~~~m~~~g~~p-d-~~t~~~l~~~~~~~g~~~~A~~~~ 941 (1004)
+..+.++|+..+++.+++-..| + -.++..|+.+++..|++++..++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888999998888753333 3 347888888888888888777665
No 389
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=55.59 E-value=3.6e+02 Score=30.71 Aligned_cols=101 Identities=19% Similarity=0.122 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQV---DAVSFAAMMYL 754 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~ 754 (1004)
.+...+.++...+...+++.+.++... ....|-.++.++...|...+|...+-+-.....+ .......++..
T Consensus 305 ~~~r~v~~l~~a~~~~e~i~~~~~ea~-----~~~~yl~~v~llle~~~~~~a~~wl~~~~r~a~~q~~t~q~~q~l~el 379 (587)
T COG4715 305 VVDREVPALASAGLQHEAIRLCEREAE-----GPGSYLDLVELLLESGEPSKAELWLARGIRTAREQLQTTQLPQTLAEL 379 (587)
T ss_pred HHHHhhhhhccchhhHHHHHHHHHHhc-----CcccHHHHHHHHHhcCChhHHHHHHHHHHhhhhHhhhhhhhHHHHHHH
Confidence 444556666777777777777666544 2234556666777777777666655544443322 22334567777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 755 YKTMGMLDEAIDAAEEMKLSGLLRDVISYNQ 785 (1004)
Q Consensus 755 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 785 (1004)
+...|+.-.|..+-....... |+...|..
T Consensus 380 ~~~~g~~~~a~~Laq~~F~r~--p~~~sy~~ 408 (587)
T COG4715 380 KEEEGRLGFAAELAQEAFFRT--PNGRSYLG 408 (587)
T ss_pred HHhhcchHHHHHHHHHHccCC--CCccchhh
Confidence 777788777777766665533 55544443
No 390
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.79 E-value=49 Score=24.24 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 887 NVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINL 924 (1004)
Q Consensus 887 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 924 (1004)
..++-++.+.|++++|.+..+.+++ ++|+......|
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 3456677888888888888888887 67865444433
No 391
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=54.78 E-value=29 Score=21.54 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMY 753 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 753 (1004)
|+.+.|..+|+++....|.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45666777777777766666666665543
No 392
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=54.32 E-value=3.1e+02 Score=32.32 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=13.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 048751 168 NVIHYNIVLRALGRAQKWDELRLRWI 193 (1004)
Q Consensus 168 ~~~~~~~li~~l~~~~~~~~a~~~~~ 193 (1004)
+..-|+ .+..+.-.|.+++|..++.
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~ 172 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLR 172 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHH
Confidence 345565 4445555567777777653
No 393
>PRK10941 hypothetical protein; Provisional
Probab=54.07 E-value=1.1e+02 Score=31.63 Aligned_cols=71 Identities=8% Similarity=-0.160 Sum_probs=38.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHH
Q 048751 473 MKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMI 543 (1004)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 543 (1004)
-.+|.+.++++.|.+..+.++.-.|.++.-+..-+-.|.+.|.+..|..-++...+.....|+.......+
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 33455555555555555555555555665555566666666666666665555554443444444333333
No 394
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=53.94 E-value=28 Score=20.90 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=9.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 048751 750 AMMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 750 ~l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
.++..+...|++++|...+++.+
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444444444444444443
No 395
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.50 E-value=38 Score=27.03 Aligned_cols=46 Identities=9% Similarity=0.009 Sum_probs=20.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 048751 757 TMGMLDEAIDAAEEMKLSGLLRD--VISYNQVMACFATNGQLRQCGEL 802 (1004)
Q Consensus 757 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 802 (1004)
...+.++|+..|+..+++-..+. -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555544322221 22344455555555555554443
No 396
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=52.52 E-value=1.6e+02 Score=30.29 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=8.3
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 048751 686 YSKIGCLEGAKQVYEKMKE 704 (1004)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~ 704 (1004)
|.+.++...+.++-.....
T Consensus 128 ysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 128 YSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHhcCHHHHHHHHHHHHh
Confidence 4444444444444444333
No 397
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.97 E-value=3e+02 Score=28.39 Aligned_cols=116 Identities=17% Similarity=0.101 Sum_probs=72.1
Q ss_pred HHHhhhHhhhhHHHHHHhhhc-----cCCch--------hHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHH
Q 048751 859 SVVGLNALALGTCETLIKAEA-----YLDSF--------IYNVAIYAFKSSGKNDKALNTFMKMLDQ--GLEPDIVTCIN 923 (1004)
Q Consensus 859 ~~~~~~~~A~~~~~~~~~~~~-----~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~ 923 (1004)
.-..++..|++.+++.++.-. ..+.. ....=|.+++..|+|.+++...-+--+. .+.|...-..+
T Consensus 46 vV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCI 125 (309)
T PF07163_consen 46 VVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCI 125 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHH
Confidence 344566677777777665421 11111 1223368999999999998765444331 23334433443
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHHHHH-----HHHHHhcCChhHHHHHH
Q 048751 924 LVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAV-----IDAYRNANREDLADLAC 976 (1004)
Q Consensus 924 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~~g~~~~A~~~~ 976 (1004)
+ .|.|.|....+.++.+.-....-+-+..-|.++ ..++.-.|.+++|+++.
T Consensus 126 L--LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 126 L--LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred H--HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3 488999998888888766544444444446544 45667789999999887
No 398
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=50.42 E-value=1.6e+02 Score=25.48 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 328 TYNTLIDLYGKAGRLQDAANVFAEMLK 354 (1004)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (1004)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377888888888888888888877766
No 399
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.26 E-value=5.4e+02 Score=31.20 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=25.3
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048751 613 IAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRM 666 (1004)
Q Consensus 613 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 666 (1004)
...+...|+.+....+-.-|.+ |..++.-+++.+.+++|++++..
T Consensus 511 ~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 511 YQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555444333332 55566667777777777776654
No 400
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.64 E-value=2.1e+02 Score=28.65 Aligned_cols=118 Identities=14% Similarity=0.085 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHH
Q 048751 781 ISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSV 860 (1004)
Q Consensus 781 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~ 860 (1004)
.+...-.+-+.+.|++.+|...|.+.+.. +..|. .=.+-|.++ .-.++.+ ..+....+...+..
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~--------l~~L~-lkEkP~e~e--W~eLdk~-----~tpLllNy~QC~L~ 242 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIIC--------LRNLQ-LKEKPGEPE--WLELDKM-----ITPLLLNYCQCLLK 242 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHH--------HHHHH-hccCCCChH--HHHHHHh-----hhHHHHhHHHHHhh
Confidence 34555566778889999999888877421 00000 000111111 0001110 11122233445667
Q ss_pred HhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048751 861 VGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD 917 (1004)
Q Consensus 861 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 917 (1004)
.|.+-++++.+..++... +.+..+|.--+.+.+..=+.++|.+-|...++ +.|.
T Consensus 243 ~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~--ldps 296 (329)
T KOG0545|consen 243 KEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE--LDPS 296 (329)
T ss_pred HHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--cChh
Confidence 778888999999999886 44888888888888888888999998988887 4553
No 401
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.23 E-value=3.4e+02 Score=27.93 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH----HHhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHH
Q 048751 680 TSLIKAYSKIGCLEGAKQVYEK----MKEMEGGPDTVASNTM-ISLYAELGMVTEAESMFNDIREKG-----QVDAVSFA 749 (1004)
Q Consensus 680 ~~li~~~~~~g~~~~A~~~~~~----~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~ 749 (1004)
.-++..+.+.|++.+|+.+... +.+.+-+++..+...+ -.+|....++.++..-+..+.... ||...+-.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 3466777888888888776553 3444444544433222 134555555555555554443321 44444444
Q ss_pred HHHHHH--HhcCCHHHHHHHHHHHHH
Q 048751 750 AMMYLY--KTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 750 ~l~~~~--~~~g~~~~A~~~~~~~~~ 773 (1004)
.++.+- |...++.-|..+|-+..+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHh
Confidence 454433 344567777777766655
No 402
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=45.83 E-value=42 Score=36.94 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=65.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH
Q 048751 683 IKAYSKIGCLEGAKQVYEKMKEMEGGPDTVAS-NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML 761 (1004)
Q Consensus 683 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 761 (1004)
++.+...+.++.|..++.++++.. |+...| ..=..++.+.+++..|+.=+.++.+..|.....|..-+.++...+++
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 344556667777777777777643 333333 22225666777777777777777777766666676666777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 762 DEAIDAAEEMKLSGLLRDVISYNQVMACF 790 (1004)
Q Consensus 762 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 790 (1004)
.+|+..|+.... +.|+..-....+.-|
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 777777777666 446655555444433
No 403
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.56 E-value=1.2e+02 Score=24.86 Aligned_cols=67 Identities=21% Similarity=0.270 Sum_probs=41.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 048751 902 ALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADL 974 (1004)
Q Consensus 902 A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 974 (1004)
+-++++.+.++|+- +......+-.+-...|+.+.|.+++..+. .| +..+..+++++...|..+.|.+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhhc
Confidence 44566666666643 12222222222235688888888888875 22 4567788888888888777654
No 404
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=45.26 E-value=50 Score=24.17 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVS 747 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 747 (1004)
.+.-++.+.|++++|.+..+.+.+..|.+..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45566778888888888888888777766543
No 405
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.07 E-value=5.9e+02 Score=31.96 Aligned_cols=84 Identities=13% Similarity=0.047 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 048751 746 VSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD----VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVL 821 (1004)
Q Consensus 746 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 821 (1004)
..|...+..+-+.+-.+++.++...+++. ..+| ..+++++.......|.+.+|...+-+-. .......+++.+
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~np--dserrrdcLRql 1060 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNP--DSERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCC--cHHHHHHHHHHH
Confidence 34677788888888899999888888764 2232 4567888888889999988877664321 112223467777
Q ss_pred HHHHHcCCCcH
Q 048751 822 FTILKKGGFPI 832 (1004)
Q Consensus 822 ~~~~~~~g~~~ 832 (1004)
+-.+..+|.++
T Consensus 1061 vivLfecg~l~ 1071 (1480)
T KOG4521|consen 1061 VIVLFECGELE 1071 (1480)
T ss_pred HHHHHhccchH
Confidence 77888888654
No 406
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.87 E-value=2.5e+02 Score=33.01 Aligned_cols=23 Identities=13% Similarity=-0.094 Sum_probs=12.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH
Q 048751 757 TMGMLDEAIDAAEEMKLSGLLRDVI 781 (1004)
Q Consensus 757 ~~g~~~~A~~~~~~~~~~~~~p~~~ 781 (1004)
..+..+.|+++|++.-+ +.|...
T Consensus 299 Da~s~~~a~~WyrkaFe--veP~~~ 321 (1226)
T KOG4279|consen 299 DAESLNHAIEWYRKAFE--VEPLEY 321 (1226)
T ss_pred chhhHHHHHHHHHHHhc--cCchhh
Confidence 34455666677776655 345543
No 407
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.50 E-value=2.9e+02 Score=26.45 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 048751 185 WDELRLRWIEMAKNGVLPTN-------NTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGE 254 (1004)
Q Consensus 185 ~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 254 (1004)
.+.|..+|+...+..-.|.. ..-...+.+|.+.|.+++|.+++++... .|+......-+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 45677777776665433211 1123456679999999999999999876 3555555555555554443
No 408
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=44.43 E-value=1e+03 Score=32.77 Aligned_cols=117 Identities=12% Similarity=0.057 Sum_probs=77.4
Q ss_pred HHHHHHHhcCChHHHHHHHHH----HHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 331 TLIDLYGKAGRLQDAANVFAE----MLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLY 406 (1004)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 406 (1004)
.|..+-.+.+.+..|+-.++. .++.. -...-|-.+...|+..+++|....+...-.. .|+. ..-|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~sl---~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPSL---YQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---CccH---HHHHHHH
Confidence 556677788899999999888 33321 1223344455588888999888877764221 2332 2344556
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 407 ADVGNINAALRYYWKIREVGLFPD-SVTQRAILHILCQRNMVQEAEAVIIEM 457 (1004)
Q Consensus 407 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 457 (1004)
...|++..|..+|+.+.+.+ |+ ...++-++......|.++..+...+-.
T Consensus 1460 e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcch
Confidence 67899999999999998854 55 556776777666777777666644433
No 409
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.36 E-value=1.5e+02 Score=24.77 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=13.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhhhh
Q 048751 504 AAIIDVYAEKGLWAEAETVFYGKRD 528 (1004)
Q Consensus 504 ~~l~~~~~~~g~~~~A~~~~~~~~~ 528 (1004)
..++......|+.++|...+++..+
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445555556666666666655444
No 410
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=43.78 E-value=3.5e+02 Score=27.07 Aligned_cols=145 Identities=16% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 048751 746 VSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTIL 825 (1004)
Q Consensus 746 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 825 (1004)
.+...-+..|.+.-++.-|-...++..+ |--.-+..| -|.+..+..--.++.+-....++.-+...+..++ +
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIiE----PIQSRCAiL--Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--f 202 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKIIE----PIQSRCAIL--RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--F 202 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhhh----hHHhhhHhh--hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--h
Q ss_pred HcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHH
Q 048751 826 KKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNT 905 (1004)
Q Consensus 826 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 905 (1004)
...|+..+|+..++.......-.. -+..++-...|++.....++..|.. ++.++|.++
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn---------------------~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~i 260 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVN---------------------QENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKI 260 (333)
T ss_pred hccchHHHHHHHHHHHhccccccc---------------------hhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHH
Q ss_pred HHHHHHCCCCC-CHHH
Q 048751 906 FMKMLDQGLEP-DIVT 920 (1004)
Q Consensus 906 ~~~m~~~g~~p-d~~t 920 (1004)
+..+-+.|+.| |.++
T Consensus 261 l~~lw~lgysp~Dii~ 276 (333)
T KOG0991|consen 261 LAELWKLGYSPEDIIT 276 (333)
T ss_pred HHHHHHcCCCHHHHHH
No 411
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=43.59 E-value=4.1e+02 Score=27.86 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=30.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHH
Q 048751 888 VAIYAFKSSGKNDKALNTFMKMLDQGLEPD---IVTCINLVGCYGKAGLVEGVKRIH 941 (1004)
Q Consensus 888 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~l~~~~~~~g~~~~A~~~~ 941 (1004)
-|+.+-.+.|+..+|.+.++.+.+. .|= .....+|+.+|....-+.+...++
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555678888888888776542 331 123445666666655555554444
No 412
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=43.53 E-value=4.1e+02 Score=27.84 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q 048751 694 GAKQVYEKMKEMEGGPDTVASNTMISLYAE----LGMVTEAESMFNDIREKGQ 742 (1004)
Q Consensus 694 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 742 (1004)
.|...+.++...+ +......+...|.. ..+..+|...|.+..+.+.
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 5666666655544 33444444444433 2356777777777777655
No 413
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=43.37 E-value=7.1e+02 Score=30.55 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=37.5
Q ss_pred hHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCh
Q 048751 869 GTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD-QGLEPDIVTCINLVGCYGKAGLV 934 (1004)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~pd~~t~~~l~~~~~~~g~~ 934 (1004)
+.|.++++--...|..+|..-..-+...|++-.|++++.++.+ .|-.+....+..++..+...|..
T Consensus 1217 e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1217 ENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred HHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 3344444332233555555555555566777777777766665 35556656666666666666655
No 414
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.35 E-value=2.4e+02 Score=33.13 Aligned_cols=175 Identities=14% Similarity=0.108 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC
Q 048751 745 AVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVIS----------YNQVMACFATNGQLRQCGELLHEMLTQ--KLL 812 (1004)
Q Consensus 745 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----------~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 812 (1004)
+.+...++..|....+|+..+++.+.++.. ||..- |.-.++-=-+-|+-++|+...-.+++. .+.
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 334445555555555555555555555541 32111 111111112345555666555555433 244
Q ss_pred CChhhH-----HH--HHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHH-Hhh-------
Q 048751 813 PDNGTF-----KV--LFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETL-IKA------- 877 (1004)
Q Consensus 813 p~~~~~-----~~--l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~-~~~------- 877 (1004)
||..++ .. +...|...+..+.|.++++++++-.|...+...++.++...|.+-+.-..++++ .+.
T Consensus 278 pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrK 357 (1226)
T KOG4279|consen 278 PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRK 357 (1226)
T ss_pred CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhcc
Confidence 543321 11 111233445556677777777766655554444455555555443221111111 110
Q ss_pred hccCCchhHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 878 EAYLDSFIYNVA---IYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINL 924 (1004)
Q Consensus 878 ~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 924 (1004)
+.-....-|.-+ ..+-.-++++.+|++.-+.|.+ ++|-.+-+...
T Consensus 358 G~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfK--Lk~P~WYLkS~ 405 (1226)
T KOG4279|consen 358 GALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFK--LKPPVWYLKST 405 (1226)
T ss_pred chHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhc--cCCceehHHHH
Confidence 000001111111 1223345677788887777776 56655444433
No 415
>PHA02875 ankyrin repeat protein; Provisional
Probab=43.19 E-value=5.1e+02 Score=28.86 Aligned_cols=139 Identities=15% Similarity=0.123 Sum_probs=69.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHH--HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC
Q 048751 336 YGKAGRLQDAANVFAEMLKSGVAVDTIT--FNTMIYTCGSHGNLSEAEALFCMMEESRISPDTK--TYNILLSLYADVGN 411 (1004)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--~~~~li~~~~~~g~ 411 (1004)
.++.|+.+.+.. +.+.|..|+... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 344566655444 445677666532 2334455566777754 44444556555432 12234556667888
Q ss_pred HHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCc--HHHHHHHHHhcCCHHHHH
Q 048751 412 INAALRYYWKIREVGLFPDSV---TQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHS--VPGVMKMYINEGLLHQAK 486 (1004)
Q Consensus 412 ~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~ 486 (1004)
.+.+..+++ .|...+.. .-.+.+...+..|+. ++++.+.+.|..++... -.+.+...+..|+.+-..
T Consensus 81 ~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 81 VKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred HHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 776655543 33221111 112334444556665 35555566676654322 123344455566665554
Q ss_pred HHHH
Q 048751 487 IIFK 490 (1004)
Q Consensus 487 ~~~~ 490 (1004)
.+++
T Consensus 153 ~Ll~ 156 (413)
T PHA02875 153 LLID 156 (413)
T ss_pred HHHh
Confidence 4443
No 416
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=42.58 E-value=1.6e+02 Score=26.06 Aligned_cols=43 Identities=9% Similarity=0.153 Sum_probs=22.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048751 698 VYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREK 740 (1004)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (1004)
-++.+...++-|++.+...-+.++.+.+++..|.++|+.+..+
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3334444444555555555555555555555555555555444
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=42.26 E-value=1.4e+02 Score=25.01 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=11.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 048751 751 MMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 751 l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
++......|++++|+..+++.+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3444445555555555555544
No 418
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.87 E-value=49 Score=34.26 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=34.4
Q ss_pred CCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH
Q 048751 201 LPTNNT-YGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMN 243 (1004)
Q Consensus 201 ~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 243 (1004)
.|+..+ |+..|....+.|++++|+.++++.+..|..--..+|-
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 455555 7899999999999999999999999998765444443
No 419
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=41.75 E-value=3.3e+02 Score=26.26 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 048751 643 VYGSLINGFAATGKVEEALQYFR 665 (1004)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~ 665 (1004)
..|.-...+.+.|.++.|+.+++
T Consensus 183 ivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 183 IVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hHHHHHHHHHHcCCchHHHHHHh
Confidence 33444444555555555555554
No 420
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=41.70 E-value=2.8e+02 Score=29.32 Aligned_cols=87 Identities=11% Similarity=0.206 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCcCHHHHHH--HHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHH
Q 048751 328 TYNTLIDLYGKAGRLQDAANVFAEMLKS---GVAVDTITFNT--MIYTCGSHGNLSEAEALFCMMEE-----SRISPDTK 397 (1004)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~--ll~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~ 397 (1004)
....++...-+.++.++|+++++++.+. --.|+.+.|-. +...+...|+..++.+++++..+ .|++|++.
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3444555666667888888888888653 22456665533 34555677888888888887776 56666553
Q ss_pred -HHHHHHHHHHh-cCCHHH
Q 048751 398 -TYNILLSLYAD-VGNINA 414 (1004)
Q Consensus 398 -~~~~li~~~~~-~g~~~~ 414 (1004)
.|+.+-+-|.+ .|++..
T Consensus 157 ~~fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 157 SSFYSLSSQYYKKIGDFAS 175 (380)
T ss_pred hhHHHHHHHHHHHHHhHHH
Confidence 35555444433 344443
No 421
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=41.57 E-value=2.8e+02 Score=25.46 Aligned_cols=94 Identities=11% Similarity=0.120 Sum_probs=61.6
Q ss_pred HHHHHCCCCcCHHH--HHHHHHHHHccCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHH
Q 048751 350 AEMLKSGVAVDTIT--FNTMIYTCGSHGNLSEAEALFCMMEESRI-----SPDTKTYNILLSLYADVGN-INAALRYYWK 421 (1004)
Q Consensus 350 ~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~~~~~li~~~~~~g~-~~~A~~~~~~ 421 (1004)
.-|.+.+..+++.+ .|.++.-....+++.....+++.+..... .-+...|.+++.+..+..- ---+..+|..
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 33455555666543 57777777777888888888877743210 1234567788877765554 3456777788
Q ss_pred HHHcCCCCCHHHHHHHHHHHHH
Q 048751 422 IREVGLFPDSVTQRAILHILCQ 443 (1004)
Q Consensus 422 m~~~g~~p~~~~~~~li~~~~~ 443 (1004)
|++.+.+++..-|..+|.++.+
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHc
Confidence 8777777788888888876544
No 422
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=41.22 E-value=4.2e+02 Score=27.33 Aligned_cols=26 Identities=12% Similarity=-0.021 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHH
Q 048751 604 PQCLTFSSVIAAYARLGQLSNAVDLF 629 (1004)
Q Consensus 604 ~~~~~~~~li~~~~~~g~~~~A~~~~ 629 (1004)
-++.....+...|.+.|++.+|...|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 34556666777777777777776555
No 423
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=41.03 E-value=55 Score=36.09 Aligned_cols=99 Identities=15% Similarity=0.029 Sum_probs=69.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048751 647 LINGFAATGKVEEALQYFRMMRECGLWANQIVLT-SLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELG 725 (1004)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 725 (1004)
-++.+...+.++.|+.++.+.++.. ||...|- .-..++.+.+++..|+.=+..+++..+. ....|..-..++.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHH
Confidence 3455667788999999999998854 5544433 3336788888888888888777775532 2334444456667777
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHH
Q 048751 726 MVTEAESMFNDIREKGQVDAVSF 748 (1004)
Q Consensus 726 ~~~~A~~~~~~~~~~~~~~~~~~ 748 (1004)
++.+|...|+......|.++.+-
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHH
Confidence 88888888888888777776544
No 424
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=40.55 E-value=2.8e+02 Score=25.10 Aligned_cols=70 Identities=9% Similarity=-0.092 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHh-CCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 048751 429 PDSVTQRAILHILCQRNM---VQEAEAVIIEMEK-CGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGL 498 (1004)
Q Consensus 429 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~-~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 498 (1004)
++..+--.+..++.+..+ ..+.+.+++++.+ ....-....+.-+.-++.+.++++.++++.+.++...+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 344444445555555433 4445556666664 222222334444555555666666666665555444433
No 425
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.48 E-value=21 Score=37.33 Aligned_cols=90 Identities=18% Similarity=0.104 Sum_probs=54.3
Q ss_pred CCcHHHHHHHHhHhhccCCchhh-hHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHH
Q 048751 829 GFPIEAVKQLQSSYQEVKPYASE-AIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFM 907 (1004)
Q Consensus 829 g~~~~A~~~l~~~~~~~~~~~~~-~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 907 (1004)
|.+++|++.+..++...++.... .--...+.+.++...|+.-|...++.. +.....|-.-..+-...|+|++|...+.
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHHHHHHH
Confidence 44445555554444444333221 111234555566666677777666664 2244556666677778899999999999
Q ss_pred HHHHCCCCCCHH
Q 048751 908 KMLDQGLEPDIV 919 (1004)
Q Consensus 908 ~m~~~g~~pd~~ 919 (1004)
..++.++.+...
T Consensus 207 ~a~kld~dE~~~ 218 (377)
T KOG1308|consen 207 LACKLDYDEANS 218 (377)
T ss_pred HHHhccccHHHH
Confidence 999877776543
No 426
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.45 E-value=30 Score=36.24 Aligned_cols=89 Identities=13% Similarity=0.018 Sum_probs=52.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHH
Q 048751 723 ELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV-ISYNQVMACFATNGQLRQCGE 801 (1004)
Q Consensus 723 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 801 (1004)
..|.++.|++.|...++.+|+....|..-..++.+.++...|++=+....+.+ ||. ..|-.-..+....|+|++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHHH
Confidence 34556666666666666666666666666666666666666666666665532 442 233333344455666666666
Q ss_pred HHHHHHHCCCCC
Q 048751 802 LLHEMLTQKLLP 813 (1004)
Q Consensus 802 ~~~~~~~~~~~p 813 (1004)
.++...+.++.+
T Consensus 204 dl~~a~kld~dE 215 (377)
T KOG1308|consen 204 DLALACKLDYDE 215 (377)
T ss_pred HHHHHHhccccH
Confidence 666665554433
No 427
>PHA02875 ankyrin repeat protein; Provisional
Probab=39.91 E-value=4.9e+02 Score=29.00 Aligned_cols=71 Identities=20% Similarity=0.174 Sum_probs=33.2
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCH
Q 048751 372 GSHGNLSEAEALFCMMEESRISPDTKT--YNILLSLYADVGNINAALRYYWKIREVGLFPDSV--TQRAILHILCQRNMV 447 (1004)
Q Consensus 372 ~~~g~~~~A~~l~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~ 447 (1004)
+..|+.+-+..++ +.|..|+... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..|+.
T Consensus 10 ~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 3556665444443 4566665432 2334445556666543 33444555544432 112233444455555
Q ss_pred HHH
Q 048751 448 QEA 450 (1004)
Q Consensus 448 ~~A 450 (1004)
+.+
T Consensus 82 ~~v 84 (413)
T PHA02875 82 KAV 84 (413)
T ss_pred HHH
Confidence 443
No 428
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.86 E-value=4.4e+02 Score=27.19 Aligned_cols=100 Identities=12% Similarity=0.103 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHcCCCCCcHH-HHH
Q 048751 884 FIYNVAIYAFKSSGKNDKALNTFMKMLD----QGLEPDIVTCIN-LVGCYGKAGLVEGVKRIHSQLKYGKMEPNEN-LFK 957 (1004)
Q Consensus 884 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~pd~~t~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~ 957 (1004)
.+|-.++.-|++.++.+.+.+...+..+ .|.+.|...... |.-.|....-+++-.+..+.+...|...+-. -|.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK 195 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYK 195 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHH
Confidence 4566677777777777777766655443 355555442222 2222333333355566666665555444432 233
Q ss_pred HHHHHH-HhcCChhHHHHHHHHHHhhc
Q 048751 958 AVIDAY-RNANREDLADLACQEMRTAF 983 (1004)
Q Consensus 958 ~l~~~~-~~~g~~~~A~~~~~~m~~~~ 983 (1004)
++-.++ ....++.+|-.++-.....|
T Consensus 196 ~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 196 VYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 332222 22344555555555444333
No 429
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=39.47 E-value=83 Score=30.73 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=19.2
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcC
Q 048751 950 EPNENLFKAVIDAYRNANREDLADLACQEMRTAFE 984 (1004)
Q Consensus 950 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 984 (1004)
.|++.+|..++.++...|+.++|....+++..-++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45555555555555555555555555555555444
No 430
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=39.05 E-value=2.1e+02 Score=28.40 Aligned_cols=95 Identities=18% Similarity=0.151 Sum_probs=55.5
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHH
Q 048751 882 DSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP---DIVTC--INLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLF 956 (1004)
Q Consensus 882 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~t~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 956 (1004)
...-+|.|+--|.-...+.+|.+.|.. +.|+.| |..++ ..-|....+.|+.+.|++..+.+...-++.+..++
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~ 102 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELF 102 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHH
Confidence 444566666666555555556665554 335555 33333 34556667888888888888776322233332222
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHH
Q 048751 957 -----KAVIDAYRNANREDLADLACQEM 979 (1004)
Q Consensus 957 -----~~l~~~~~~~g~~~~A~~~~~~m 979 (1004)
.+++ -+.+.|..++|.++++.=
T Consensus 103 F~Lq~q~lI-EliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 103 FHLQQLHLI-ELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHH-HHHHhhhHHHHHHHHHHH
Confidence 2333 345778888888887743
No 431
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=38.90 E-value=1e+02 Score=27.16 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=39.4
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 048751 906 FMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVID 961 (1004)
Q Consensus 906 ~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 961 (1004)
+.......+.|++.....-+++|.+..++.-|.++++.+.. ...+.-.+|..+++
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~-K~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD-KCGAQKQVYPYYVK 126 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-hcccHHHHHHHHHH
Confidence 33444567889999999999999999999999999988753 23333445666554
No 432
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=38.17 E-value=2.2e+02 Score=30.01 Aligned_cols=93 Identities=13% Similarity=-0.010 Sum_probs=60.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 048751 681 SLIKAYSKIGCLEGAKQVYEKMKEMEG---GPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT 757 (1004)
Q Consensus 681 ~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (1004)
-=.+-|.+..++..|...|.+-++..+ ..+.+.|+.-..+-.-.|++..|+.=....+...|....+|..=+.++..
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 334456667777777777777655443 22334555555555566777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 048751 758 MGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 758 ~g~~~~A~~~~~~~~~ 773 (1004)
..++++|..+.++...
T Consensus 166 Le~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 7777777766665543
No 433
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=37.76 E-value=5.2e+02 Score=27.34 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHHHHHH
Q 048751 885 IYNVAIYAFKSSGKNDKALNTFMKMLD----QGLEPDIVTCIN 923 (1004)
Q Consensus 885 ~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~pd~~t~~~ 923 (1004)
++-..+.-|++.|+.+.|++.+.+..+ .|.+.|.+-+..
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~i 148 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKI 148 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHH
Confidence 344455566666666666666555443 355555554443
No 434
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=37.43 E-value=9.4e+02 Score=30.29 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHHcCCH
Q 048751 779 DVISYNQVMACFATNGQL 796 (1004)
Q Consensus 779 ~~~~~~~l~~~~~~~g~~ 796 (1004)
|...-...+.++...|..
T Consensus 788 d~~VR~aA~~aLg~~g~~ 805 (897)
T PRK13800 788 DPLVRAAALAALAELGCP 805 (897)
T ss_pred CHHHHHHHHHHHHhcCCc
Confidence 344444444444444443
No 435
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.22 E-value=1.9e+02 Score=24.26 Aligned_cols=54 Identities=15% Similarity=0.136 Sum_probs=39.0
Q ss_pred hHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 869 GTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINL 924 (1004)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 924 (1004)
+.++++-.++.+..+.....|+-.|++.|+-|.|.+-|+.=. .+.|.+.+|.-.
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEK--alFPES~~fmDF 111 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEK--ALFPESGVFMDF 111 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhh--hhCccchhHHHH
Confidence 345556556556667777888889999999999998888643 377877766543
No 436
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=36.84 E-value=1.1e+02 Score=26.44 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 048751 954 NLFKAVIDAYRNANREDLADLACQEMRTA 982 (1004)
Q Consensus 954 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 982 (1004)
..|..|++.|...|..++|.+++.++...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~~ 68 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLADE 68 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhcc
Confidence 46778888888888888888888887774
No 437
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.30 E-value=1.1e+02 Score=21.74 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=21.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048751 215 GKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVR 247 (1004)
Q Consensus 215 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 247 (1004)
-+.|..+++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777666666655543
No 438
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=36.19 E-value=5.2e+02 Score=26.96 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 048751 641 EVVYGSLINGFAATGKVEEAL 661 (1004)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~ 661 (1004)
..+|.-|+.++|..|+.+..+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 345788888888888876554
No 439
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.33 E-value=7.5e+02 Score=28.49 Aligned_cols=93 Identities=12% Similarity=0.121 Sum_probs=61.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHH
Q 048751 648 INGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAY-SKIGCLEGAKQVYEKMKEMEG---GPDTVASNTMISLYAE 723 (1004)
Q Consensus 648 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~ 723 (1004)
|..+.+.|.+.-|.++.+.+......-|+.....+|+.| .++.+++-.+++++.....+. -|+..--.+|+..|..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 445677888999999888888877666788888888876 467788888888877644332 4555444455555655
Q ss_pred cCC---HHHHHHHHHHHHHc
Q 048751 724 LGM---VTEAESMFNDIREK 740 (1004)
Q Consensus 724 ~g~---~~~A~~~~~~~~~~ 740 (1004)
... -..|+..+.++...
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKH 448 (665)
T ss_pred cCChhhHHHHHHHHHHHHHh
Confidence 444 34455555555544
No 440
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=35.18 E-value=3.5e+02 Score=24.56 Aligned_cols=68 Identities=12% Similarity=0.021 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 742 QVDAVSFAAMMYLYKTMGM---LDEAIDAAEEMKLSGL-LRDVISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 742 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
.+...+...+++++.+..+ ..+.+.+++++.+... .........|.-++.+.++++.++.+.+.+++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3445556666667766554 4456677777775222 112333344555777888888888887777654
No 441
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.97 E-value=6.9e+02 Score=27.95 Aligned_cols=21 Identities=19% Similarity=-0.083 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 048751 759 GMLDEAIDAAEEMKLSGLLRD 779 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~~~~~p~ 779 (1004)
++.+.|+.++.+|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455556666666665554444
No 442
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=34.73 E-value=5.2e+02 Score=26.47 Aligned_cols=124 Identities=8% Similarity=0.042 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHH-HHHHH
Q 048751 690 GCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL-GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLD-EAIDA 767 (1004)
Q Consensus 690 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~ 767 (1004)
..-..|.++.+..+..++. +-.+|..--.++... .+..+-++.++++.+.+|.+-..|..--......|+.. .-+.+
T Consensus 57 E~S~RAl~LT~d~i~lNpA-nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef 135 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPA-NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEF 135 (318)
T ss_pred ccCHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHH
Confidence 4456677777777665432 212222111111111 24777788899999999999998887777777777776 66777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh
Q 048751 768 AEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDN 815 (1004)
Q Consensus 768 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 815 (1004)
.+.|+...- .+-.+|..--.++..-+.+++-+.+..++++.++..+.
T Consensus 136 ~~~~l~~Da-KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS 182 (318)
T KOG0530|consen 136 TKLMLDDDA-KNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS 182 (318)
T ss_pred HHHHHhccc-cchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence 888887432 56677777777777778899989999999887766554
No 443
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=34.69 E-value=8.6e+02 Score=28.99 Aligned_cols=262 Identities=10% Similarity=0.012 Sum_probs=129.3
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048751 581 FAGGDLMGQAVDLLAEMQGAGFKPQCLTF----SSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGK 656 (1004)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 656 (1004)
....|...+|.+++.-.+-..- +....| ..+.-++...|..+...+++.+..+..-.+.+..=.+|.-++...|-
T Consensus 367 vIH~G~~~~~~~ll~pYLP~~~-~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS 445 (929)
T KOG2062|consen 367 VIHRGHENQAMKLLAPYLPKEA-GEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMGS 445 (929)
T ss_pred eeeccccchHHHHhhhhCCccC-CCCCCccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhccc
Confidence 3466778888888776653310 111112 12223344455555577776666554322222222334444444443
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCH-HHHHH-HHHHHHhCCCCCCHHHHHH--HHHHHHHcCCHHHH
Q 048751 657 VEEALQYFRMMRECGLWANQIVL--TSLIKAYSKIGCL-EGAKQ-VYEKMKEMEGGPDTVASNT--MISLYAELGMVTEA 730 (1004)
Q Consensus 657 ~~~A~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~-~~A~~-~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A 730 (1004)
. -.++|+.+.+.-..-+..+- ..+..+++..|.+ .+|++ ++.-..+.. ...+... +.-++.--|+-++|
T Consensus 446 a--~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQ---Heki~RGl~vGiaL~~ygrqe~A 520 (929)
T KOG2062|consen 446 A--NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQ---HEKIIRGLAVGIALVVYGRQEDA 520 (929)
T ss_pred c--cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhh---HHHHHHHHHHhHHHHHhhhhhhh
Confidence 2 22444444432111222221 1122233444432 22222 333333221 1222222 23345566777888
Q ss_pred HHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 731 ESMFNDIREKGQV--DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 731 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
..+.+++.....| ...-..+++.+|+..|+.....+++.-... ....|+.-+..+.-++.-..+++....+..-+.+
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs-D~nDDVrRaAVialGFVl~~dp~~~~s~V~lLse 599 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS-DVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSE 599 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhccccc-ccchHHHHHHHHHheeeEecChhhchHHHHHHhh
Confidence 8888888765421 112245667788888887766666655544 2334555555555566667788887777765543
Q ss_pred CCCCCChhhHHHHHHH-HHcCCCcHHHHHHHHhHhhccCCchh
Q 048751 809 QKLLPDNGTFKVLFTI-LKKGGFPIEAVKQLQSSYQEVKPYAS 850 (1004)
Q Consensus 809 ~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~l~~~~~~~~~~~~ 850 (1004)
...|....-..+.-+ .+..--..+|+.+++.+.........
T Consensus 600 -s~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVR 641 (929)
T KOG2062|consen 600 -SYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVR 641 (929)
T ss_pred -hcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHH
Confidence 345544332222222 22233357888888887764444443
No 444
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=34.64 E-value=6.4e+02 Score=27.53 Aligned_cols=53 Identities=17% Similarity=0.073 Sum_probs=28.1
Q ss_pred HHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHH-hcCChHHHHHHHHHHH
Q 048751 858 YSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFK-SSGKNDKALNTFMKML 910 (1004)
Q Consensus 858 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~ 910 (1004)
+.+.|.+.-|++.++-+++.++..|+...-..|+.|+ ++++++=-+++++...
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 3455555556666666666655545555555555443 3445554555555443
No 445
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.77 E-value=6.7e+02 Score=27.47 Aligned_cols=61 Identities=11% Similarity=0.115 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKG---QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
.+.-+.+-|..+|+++.|.+.|.+..+-. ..-+..|..++..-...|+|.....+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 44556677777777777777777755543 22344566666666777777776666666554
No 446
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=33.74 E-value=4.9e+02 Score=27.63 Aligned_cols=116 Identities=13% Similarity=0.034 Sum_probs=59.0
Q ss_pred hhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhc------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCh
Q 048751 862 GLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSS------GKNDKALNTFMKMLDQGLEPDIV-TCINLVGCYGKAGLV 934 (1004)
Q Consensus 862 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~m~~~g~~pd~~-t~~~l~~~~~~~g~~ 934 (1004)
+..+++....++.+.... +-++.....|.++... -+|..-..+|+.+.. +.|+++ ++|--+ +..+..-.
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAV-Ala~~~Gp 345 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAV-ALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHH-HHHHhhhH
Confidence 444556666666666553 3444444444444221 256666677776665 455533 333322 22232223
Q ss_pred hHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048751 935 EGVKRIHSQLKYG-KMEPNENLFKAVIDAYRNANREDLADLACQEMRT 981 (1004)
Q Consensus 935 ~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 981 (1004)
+.+..+++.+... .++---..+..-.+.|.+.|+.++|...+++.-.
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 4445555554321 1111122334556777777888888777776543
No 447
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.67 E-value=1e+02 Score=23.41 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 645 GSLINGFAATGKVEEALQYFRMMR 668 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~ 668 (1004)
-.+|.+|...|++++|.++++.+.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555555543
No 448
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=33.67 E-value=2.1e+02 Score=36.19 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=29.8
Q ss_pred HHHcCCHHHHHH------HHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHh
Q 048751 790 FATNGQLRQCGE------LLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQS 840 (1004)
Q Consensus 790 ~~~~g~~~~A~~------~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~ 840 (1004)
....|.+.+|.+ ++......-..+....|..+...+.+.|+.++|+.+-+.
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~k 998 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRK 998 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhccc
Confidence 344555555555 555333222334455677777777788888777765544
No 449
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=33.62 E-value=9.3e+02 Score=30.36 Aligned_cols=28 Identities=11% Similarity=0.360 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHC
Q 048751 782 SYNQVMACFATNG--QLRQCGELLHEMLTQ 809 (1004)
Q Consensus 782 ~~~~l~~~~~~~g--~~~~A~~~~~~~~~~ 809 (1004)
-...++.+|.+.+ ++++|+.++.++.+.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3456677777777 777777777777644
No 450
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=33.50 E-value=6.7e+02 Score=27.49 Aligned_cols=55 Identities=7% Similarity=-0.177 Sum_probs=33.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHH--HHcCCHHHHHHHHHH
Q 048751 751 MMYLYKTMGMLDEAIDAAEEMKLSGLLRDVIS----YNQVMACF--ATNGQLRQCGELLHE 805 (1004)
Q Consensus 751 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~l~~~~--~~~g~~~~A~~~~~~ 805 (1004)
.+..+.+.+++..|..+|+++....+.++... |..+..+| ...-++++|.+.++.
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 44466778888888888888887755444332 33334443 235566666666654
No 451
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.25 E-value=1.8e+02 Score=29.82 Aligned_cols=58 Identities=19% Similarity=0.102 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 048751 886 YNVAIYAFKSSGKNDKALNTFMKMLD----QGLE-PDIVTCINLVGCYGKAGLVEGVKRIHSQ 943 (1004)
Q Consensus 886 ~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~-pd~~t~~~l~~~~~~~g~~~~A~~~~~~ 943 (1004)
...++.-|.+.|++++|.++|+.+.. .|.. +...+...+..|..+.|+.+....+.=+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34567888889999999999988863 2332 2445666667777777777766655433
No 452
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=32.79 E-value=90 Score=30.47 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=27.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048751 201 LPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLR 233 (1004)
Q Consensus 201 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 233 (1004)
.|++.+|..++.++...|+.++|.++.+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678888888888888888888888888888776
No 453
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.51 E-value=1.4e+02 Score=35.77 Aligned_cols=75 Identities=16% Similarity=0.163 Sum_probs=46.4
Q ss_pred HHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCCh
Q 048751 820 VLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKN 899 (1004)
Q Consensus 820 ~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 899 (1004)
.++.-+.+.|.++-|+.+.+....+ -.+...+|+.+.|++.+.++- +...|..|+..-...|+.
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tR----------F~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~ 688 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTR----------FELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNH 688 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchh----------eeeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcch
Confidence 3444455666666666555442211 123456677777776666542 455788888877788888
Q ss_pred HHHHHHHHHHH
Q 048751 900 DKALNTFMKML 910 (1004)
Q Consensus 900 ~~A~~~~~~m~ 910 (1004)
+-|.-.|++..
T Consensus 689 ~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 689 QIAEMCYQRTK 699 (1202)
T ss_pred HHHHHHHHHhh
Confidence 88877777654
No 454
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.45 E-value=95 Score=23.61 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=18.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 166 VPNVIHYNIVLRALGRAQKWDELRLRWIEMA 196 (1004)
Q Consensus 166 ~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~ 196 (1004)
+||-.---.+|.+|...|++++|.+...++.
T Consensus 20 RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 20 RHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555444556666666666666666666554
No 455
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.25 E-value=1.5e+02 Score=21.06 Aligned_cols=33 Identities=6% Similarity=0.297 Sum_probs=20.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 048751 337 GKAGRLQDAANVFAEMLKSGVAVDTITFNTMIY 369 (1004)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 369 (1004)
.+.|-..++...+++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666666666666666666666665555543
No 456
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.23 E-value=4.7e+02 Score=28.80 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=22.7
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 048751 617 ARLGQLSNAVDLFHEMRRAGVEPNEV--VYGSLINGFAA--TGKVEEALQYFRMMR 668 (1004)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~ 668 (1004)
.+.+++..|.++|+++... ++++.. .+..+..+|.. .-++++|.+.++...
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3455555555555555554 333332 23333333332 233444555554443
No 457
>PRK12798 chemotaxis protein; Reviewed
Probab=32.07 E-value=7.3e+02 Score=27.40 Aligned_cols=89 Identities=16% Similarity=0.025 Sum_probs=49.6
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH--HhcCChhHHHHHHHHHHcCCCCCcHHHHHHH
Q 048751 883 SFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD-IVTCINLVGCY--GKAGLVEGVKRIHSQLKYGKMEPNENLFKAV 959 (1004)
Q Consensus 883 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 959 (1004)
...|..+.+.-.-.|+.+-|.-.-++.+...-..+ ...-..|-.+. .-..+.+++.+-+..+....+.|.....
T Consensus 257 ~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~L--- 333 (421)
T PRK12798 257 RELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRAL--- 333 (421)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHH---
Confidence 45677777888888999888888888776421111 11111222222 2344566777777666555555544321
Q ss_pred HHHHHhcCChhHHHHHHHHHHhhc
Q 048751 960 IDAYRNANREDLADLACQEMRTAF 983 (1004)
Q Consensus 960 ~~~~~~~g~~~~A~~~~~~m~~~~ 983 (1004)
.+-|..+...++..+
T Consensus 334 ---------l~AA~~va~~V~~~p 348 (421)
T PRK12798 334 ---------LEAARSVARQVRRAP 348 (421)
T ss_pred ---------HHHHHHHHHHHhcCc
Confidence 344555556666555
No 458
>PRK09857 putative transposase; Provisional
Probab=31.66 E-value=2.2e+02 Score=30.00 Aligned_cols=77 Identities=12% Similarity=0.013 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCchhhhhcccc
Q 048751 921 CINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADLACQEMRTAFESPEHDDSEFEENSEE 999 (1004)
Q Consensus 921 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 999 (1004)
+..+++...+.|+.++..++++.+... ........-+++.-+...|..+++.++.++|...+.+.++ +...++.|++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~-I~~~TgLs~e 285 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLAD-IMRFTGLSEE 285 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH-HHHHhCCCHH
Confidence 455666556778887778887777543 2333444557888888889988999999999888776654 4455566554
No 459
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=30.69 E-value=6.2e+02 Score=26.18 Aligned_cols=64 Identities=11% Similarity=0.266 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKG-----QVDAV-SFAAMMYLYKTMGMLDEAIDAAEEMKLSGL 776 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 776 (1004)
++..+...|++.++.+.+.+...+..+.. ..|+. +-..|+..|....-.++.++..+.+.++|.
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 44445555555555555555555443332 11211 112233333334345555555555555553
No 460
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=29.75 E-value=4.3e+02 Score=25.89 Aligned_cols=108 Identities=15% Similarity=0.017 Sum_probs=64.8
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHc-C-------------
Q 048751 883 SFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIV-TCINLVGCYGKAGLVEGVKRIHSQLKY-G------------- 947 (1004)
Q Consensus 883 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~l~~~~~~~g~~~~A~~~~~~~~~-~------------- 947 (1004)
....+.++..+...|+++.|.+.|--++... ..|.. .|..=+..+.+.+......++++.+.. +
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~ 119 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRR 119 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhh
Confidence 3456778888888999999999998888631 12422 455555566666665544455554421 0
Q ss_pred CCCCc---------H-----HHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCch
Q 048751 948 KMEPN---------E-----NLFKAVIDAYRNANREDLADLACQEMRTAFESPEHDDS 991 (1004)
Q Consensus 948 ~~~p~---------~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 991 (1004)
.+.|- + ..|..++..-.+....+++.++.++|..-=-+|+|.+|
T Consensus 120 ~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~ 177 (199)
T PF04090_consen 120 IIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDD 177 (199)
T ss_pred cccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCc
Confidence 01110 0 12223333332333456788999999988888888877
No 461
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=29.63 E-value=5.6e+02 Score=25.80 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=11.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCC
Q 048751 756 KTMGMLDEAIDAAEEMKLSGL 776 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~~~ 776 (1004)
...|+++.|+++.+-++++|.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCC
Confidence 345555555555555555554
No 462
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=29.31 E-value=56 Score=29.22 Aligned_cols=31 Identities=29% Similarity=0.474 Sum_probs=24.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 048751 338 KAGRLQDAANVFAEMLKSGVAVDTITFNTMIYT 370 (1004)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 370 (1004)
+.|.-.+|-.+|.+|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 347777899999999999988875 5667654
No 463
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=29.10 E-value=5.5e+02 Score=27.31 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=51.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH-HH
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKG----QVDAVSF--AAMMYLYKTMGMLDEAIDAAEEMKL-----SGLLRDVI-SY 783 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~-~~ 783 (1004)
.++....+.++.++|.+.++++.+.- .|+...| ..++.++...|+.+++.+.+++..+ .++.|++. .|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 34444555667777777777776553 3344443 3455667778888888888877776 56666543 46
Q ss_pred HHHHHHHH-HcCCHHHH
Q 048751 784 NQVMACFA-TNGQLRQC 799 (1004)
Q Consensus 784 ~~l~~~~~-~~g~~~~A 799 (1004)
+.+..-|. ..|++...
T Consensus 160 Y~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 66655554 34555443
No 464
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=28.65 E-value=1.3e+02 Score=31.36 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=30.2
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHH
Q 048751 322 KPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITF 364 (1004)
Q Consensus 322 ~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 364 (1004)
.|+...-||.-|..-.+.||+++|+.++++..+.|+.--..+|
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3444455678888888888888888888888887765433444
No 465
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.57 E-value=4.3e+02 Score=23.62 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048751 729 EAESMFNDIREKG--QVDAVSFAAMMYLYKTMGMLDEAIDAAEE 770 (1004)
Q Consensus 729 ~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 770 (1004)
.+.++|+.|..++ ..-+..|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5666666665554 34455566666666666666666665554
No 466
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.44 E-value=8.5e+02 Score=26.72 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048751 501 KTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKK-SVVEYNVMIKAYGKSKLYDKAFSLFKVMKN 564 (1004)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 564 (1004)
.+...+++.|..+|+++.|.+.|.+.++-..... .+..|-.+|..-.-.|+|........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3566788889999999999998888665422211 223455555555566776666665555544
No 467
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=27.27 E-value=2.6e+02 Score=29.76 Aligned_cols=66 Identities=21% Similarity=0.271 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh
Q 048751 898 KNDKALNTFMKMLDQGLEPDI----VTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRN 965 (1004)
Q Consensus 898 ~~~~A~~~~~~m~~~g~~pd~----~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 965 (1004)
-.++.+.++..++. --|+. --|.+++......|.+++++.+|+.+...|-.|-..+-.++++++..
T Consensus 118 p~eei~~~L~~li~--~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~ 187 (353)
T PF15297_consen 118 PKEEILATLSDLIK--NIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKM 187 (353)
T ss_pred CHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 34677778887776 35654 47888888888999999999999988888888888888888888763
No 468
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=26.76 E-value=1.2e+03 Score=28.24 Aligned_cols=99 Identities=12% Similarity=0.085 Sum_probs=62.2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHH---HHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048751 323 PRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIY---TCGSHGNLSEAEALFCMMEESRISPDTKTY 399 (1004)
Q Consensus 323 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 399 (1004)
+-+...++.||..+.+.|++++...--..|.+.- +.+...|..-+. .....++..++..+|+..+..-. ++..|
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw 186 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIW 186 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHH
Confidence 3345678899999999999988777777776652 223444433332 22345778888888888875433 33344
Q ss_pred HHHHHHHH-------hcCCHHHHHHHHHHHHH
Q 048751 400 NILLSLYA-------DVGNINAALRYYWKIRE 424 (1004)
Q Consensus 400 ~~li~~~~-------~~g~~~~A~~~~~~m~~ 424 (1004)
.-.+..+. +.++++....+|.+...
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHh
Confidence 43443332 34567777778877765
No 469
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.16 E-value=6.1e+02 Score=24.62 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=10.7
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 048751 723 ELGMVTEAESMFNDIREK 740 (1004)
Q Consensus 723 ~~g~~~~A~~~~~~~~~~ 740 (1004)
+.|+++.|...++-|.+.
T Consensus 133 ~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 133 RKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 446666666666666554
No 470
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.10 E-value=9.8e+02 Score=26.96 Aligned_cols=84 Identities=12% Similarity=-0.011 Sum_probs=48.8
Q ss_pred HcCCHHHHHHHHHHHHHcC--CCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHH
Q 048751 723 ELGMVTEAESMFNDIREKG--QVD--------AVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISY--NQVMACF 790 (1004)
Q Consensus 723 ~~g~~~~A~~~~~~~~~~~--~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~ 790 (1004)
-.|++.+|++-...|.+-. .|. ...-..++.-++..+.++.|..-|....+.--..|...+ ..+...|
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 4688888888888887654 121 111122233344567788888888777664333443322 3355567
Q ss_pred HHcCCHHHHHHHHHHH
Q 048751 791 ATNGQLRQCGELLHEM 806 (1004)
Q Consensus 791 ~~~g~~~~A~~~~~~~ 806 (1004)
.+.|+-+.-.++++..
T Consensus 415 L~~~~~ed~y~~ld~i 430 (629)
T KOG2300|consen 415 LRIGDAEDLYKALDLI 430 (629)
T ss_pred HHhccHHHHHHHHHhc
Confidence 7777766655555543
No 471
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=25.55 E-value=3.9e+02 Score=22.09 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=16.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTE 729 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 729 (1004)
.|+.+.|.+++..+. .|. ..|..+++++...|.-.-
T Consensus 49 ~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 49 HGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHEL 84 (88)
T ss_pred cCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhh
Confidence 355555555555544 221 234445555555444333
No 472
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=25.42 E-value=4.7e+02 Score=27.74 Aligned_cols=54 Identities=20% Similarity=0.126 Sum_probs=23.3
Q ss_pred HHHHhhhHhhhhHHHHHHhhh---ccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 858 YSVVGLNALALGTCETLIKAE---AYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 858 ~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
+.+.+++..|...|-+.++.. +..+.+.|+.-+.+-...|++..|+.=..+.+.
T Consensus 91 ~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~ 147 (390)
T KOG0551|consen 91 YFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK 147 (390)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444331 112233444444444444555555544444443
No 473
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=25.34 E-value=1.4e+02 Score=29.68 Aligned_cols=53 Identities=25% Similarity=0.178 Sum_probs=31.4
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 722 AELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
.+.++.+.|.+++.++.+.-|.....|..+...--+.|+++.|.+.+++..+.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34555556666666666555555556666666666666666666666665553
No 474
>PRK09857 putative transposase; Provisional
Probab=24.77 E-value=5.4e+02 Score=27.10 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL 776 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 776 (1004)
.++....+.++.++-.++++.+.+..+.......+++.-+.+.|.-++++++..+|+..|+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333334455555555555555544333333344455555555554555555555555554
No 475
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.67 E-value=2.6e+02 Score=25.75 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=18.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHh
Q 048751 437 ILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYIN 478 (1004)
Q Consensus 437 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 478 (1004)
++..+.+.++.-.|.++++++.+.+...+..|....+..+..
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e 67 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEE 67 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHH
Confidence 334444444444445555555444444444443333333333
No 476
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.17 E-value=3.7e+02 Score=24.79 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=12.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 048751 683 IKAYSKIGCLEGAKQVYEKMKEMEGGPDT 711 (1004)
Q Consensus 683 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 711 (1004)
++.+...++.-.|.++++.+.+.++..+.
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~isl 55 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGISL 55 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCH
Confidence 33334444444444444444444443333
No 477
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=23.69 E-value=1.6e+02 Score=19.02 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=16.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 898 KNDKALNTFMKMLDQGLEPDIVTCINL 924 (1004)
Q Consensus 898 ~~~~A~~~~~~m~~~g~~pd~~t~~~l 924 (1004)
.+|.|..+|++.+. +.|++.+|..-
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHH
Confidence 45777778887776 56777666543
No 478
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=23.51 E-value=7.5e+02 Score=24.74 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=30.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH----HHHcCCCcHHHHHHHHhHhh
Q 048751 786 VMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFT----ILKKGGFPIEAVKQLQSSYQ 843 (1004)
Q Consensus 786 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~g~~~~A~~~l~~~~~ 843 (1004)
-|......|+.++|++..+++-..-+..|...+-.+.. -+.+.|..++|+++.+.-+.
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 45556777777777777776632223333222211111 13455666666666665443
No 479
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.30 E-value=1.4e+03 Score=27.91 Aligned_cols=112 Identities=15% Similarity=0.160 Sum_probs=63.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 325 LTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLS 404 (1004)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 404 (1004)
+..+|..|+..-..+|+.+-|...|++.+. |+.|--.|.-.|+.++-.++-.....++ |..+.. .
T Consensus 671 d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~---D~~~~~---q 735 (1202)
T KOG0292|consen 671 DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN---DATGQF---Q 735 (1202)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh---hhHHHH---H
Confidence 356788888888888888888888877764 3333334556677777666665554431 322111 1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048751 405 LYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKC 460 (1004)
Q Consensus 405 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 460 (1004)
...-.|++++-..+++..-. .| ..|.+ -...|.-++|.++.++..+.
T Consensus 736 nalYl~dv~ervkIl~n~g~---~~--laylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 736 NALYLGDVKERVKILENGGQ---LP--LAYLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHhccHHHHHHHHHhcCc---cc--HHHHH----HhhcCcHHHHHHHHHhhccc
Confidence 11124566665555543321 11 11111 12356667777777777653
No 480
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=22.95 E-value=1e+03 Score=30.10 Aligned_cols=111 Identities=10% Similarity=0.077 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048751 573 TYNSLVQMFAGGD--LMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLING 650 (1004)
Q Consensus 573 t~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 650 (1004)
-+..++.+|.+.+ ++++|+.+...+.+.+ ...-...+.-.+ -+-++-++|+..... -|.. -+++-+
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~----~~~ae~alkyl~---fLvDvn~Ly~~ALG~---YDl~--Lal~VA 881 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREED----PESAEEALKYLC---FLVDVNKLYDVALGT---YDLE--LALMVA 881 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhcC----hHHHHHHHhHhe---eeccHHHHHHHHhhh---cCHH--HHHHHH
Confidence 3456666777666 7777777777776541 111111111111 111222333332210 0111 123334
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 651 FAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEK 701 (1004)
Q Consensus 651 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 701 (1004)
-..+.+++|-+-+++++.+. +++. -...|+ ...+++++|++-+.+
T Consensus 882 q~SQkDPKEYLPfL~~L~~l--~~~~--rry~ID--~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 882 QQSQKDPKEYLPFLQELQKL--PPLY--RRYKID--DHLKRYEKALRHLSA 926 (928)
T ss_pred HHhccChHHHHHHHHHHHhC--Chhh--eeeeHh--hhhCCHHHHHHHHHh
Confidence 44556777777777777663 2222 122233 235788888877654
No 481
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.80 E-value=5.8e+02 Score=29.70 Aligned_cols=86 Identities=15% Similarity=0.291 Sum_probs=43.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048751 653 ATGKVEEALQYFRMMRECGLWANQI------VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGM 726 (1004)
Q Consensus 653 ~~g~~~~A~~~~~~m~~~g~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 726 (1004)
+..++..+.+.|..-... +..|.. ....|.-+|....+.|.|.++++++.+.+.. ++.+--.+..+....|.
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhcc
Confidence 345556666666544432 222221 2334444555566666666666666654322 33333344455555666
Q ss_pred HHHHHHHHHHHHHc
Q 048751 727 VTEAESMFNDIREK 740 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~ 740 (1004)
-++|+.....+...
T Consensus 444 Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 444 SEEALTCLQKIKSS 457 (872)
T ss_pred hHHHHHHHHHHHhh
Confidence 66666666655543
No 482
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.53 E-value=1.1e+03 Score=26.21 Aligned_cols=56 Identities=18% Similarity=0.113 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhh
Q 048751 471 GVMKMYINEGLLHQAKIIFKKCQLD--------GGLSSKTLAAIIDVYAEKGLWAEAETVFYGK 526 (1004)
Q Consensus 471 ~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 526 (1004)
.+++..+-.|++..|++.++.+... .+-...++..++-+|.-.+++.+|.+.|..+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555554443211 1122345666777777777788887777664
No 483
>PRK05414 urocanate hydratase; Provisional
Probab=22.29 E-value=3.8e+02 Score=30.22 Aligned_cols=68 Identities=26% Similarity=0.254 Sum_probs=45.3
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcC-CHH
Q 048751 339 AGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKT----YNILLSLYADVG-NIN 413 (1004)
Q Consensus 339 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~----~~~li~~~~~~g-~~~ 413 (1004)
..++++|+...++.++.+-. - ..|-+..|.++|.++.++|+.||..| ....+.+|+=.| .++
T Consensus 216 ~~~Ldeal~~~~~a~~~~~~-~------------SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~e 282 (556)
T PRK05414 216 ADDLDEALALAEEAKAAGEP-L------------SIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLE 282 (556)
T ss_pred cCCHHHHHHHHHHHHHcCCc-e------------EEEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHH
Confidence 45788888888888876532 1 22344567788999999999998754 222333777777 566
Q ss_pred HHHHHH
Q 048751 414 AALRYY 419 (1004)
Q Consensus 414 ~A~~~~ 419 (1004)
++.++.
T Consensus 283 e~~~lr 288 (556)
T PRK05414 283 EAAELR 288 (556)
T ss_pred HHHHHH
Confidence 666544
No 484
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=21.89 E-value=4.5e+02 Score=27.08 Aligned_cols=64 Identities=9% Similarity=-0.016 Sum_probs=52.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVIS 782 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 782 (1004)
+=..+.+.++++.|....++....+|.++.-+..-+.+|.+.|.+.-|+.-++...++- |+...
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~--P~~~~ 250 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC--PDDPI 250 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC--CCchH
Confidence 44567788899999999999999999998888888889999999999988888877643 55443
No 485
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=21.73 E-value=7.8e+02 Score=26.42 Aligned_cols=64 Identities=16% Similarity=0.094 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 728 TEAESMFNDIREKGQV---DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFA 791 (1004)
Q Consensus 728 ~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 791 (1004)
++...+++.+...-|. -...|.+++..+...|.+++.+.+|++++..|..|-...-..++..+-
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3445555555444332 234678888888888888888888888888888877666666665544
No 486
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=21.64 E-value=7.8e+02 Score=31.48 Aligned_cols=123 Identities=16% Similarity=0.061 Sum_probs=70.1
Q ss_pred HHHcCCHHHHHH------HHH-HHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HCCCCCCHHHHHHH
Q 048751 721 YAELGMVTEAES------MFN-DIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK-------LSGLLRDVISYNQV 786 (1004)
Q Consensus 721 ~~~~g~~~~A~~------~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~p~~~~~~~l 786 (1004)
....|.+.+|.+ ++. .|....+.....|..+...+.+.|+.++|+..-.+.. ...-..+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344555665655 666 3444446677788999999999999999987654432 22221224455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC-----CC-CCChh-hHHHHHHHHHcCCCcHHHHHHHHhHhh
Q 048751 787 MACFATNGQLRQCGELLHEMLTQ-----KL-LPDNG-TFKVLFTILKKGGFPIEAVKQLQSSYQ 843 (1004)
Q Consensus 787 ~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~~-~~~~l~~~~~~~g~~~~A~~~l~~~~~ 843 (1004)
.-.....+....|...+.+.... |- .|... ++..+-..+...++.+.|+++++.+..
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55555666777777776666332 21 23333 223333333334566666666666554
No 487
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.56 E-value=6.4e+02 Score=29.34 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGG---PD--TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMM 752 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 752 (1004)
.|+...+ ..+..++..+.+.|..-...-+. .+ ......|.-+|....+.|.|.++++++.+.+|.++..-..+.
T Consensus 357 LWn~A~~-~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 357 LWNTAKK-LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHhhHH-HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 4554443 34667888888888765542221 11 124566777888888999999999999998888888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 048751 753 YLYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 753 ~~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
.+....|.-++|+......+..
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 8899999999999888887753
No 488
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=21.32 E-value=3.2e+02 Score=27.90 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhh
Q 048751 504 AAIIDVYAEKGLWAEAETVFYGK 526 (1004)
Q Consensus 504 ~~l~~~~~~~g~~~~A~~~~~~~ 526 (1004)
..++..|.+.|++++|.++|+.+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 34555556666666666655543
No 489
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.13 E-value=7.7e+02 Score=28.09 Aligned_cols=37 Identities=5% Similarity=-0.070 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh
Q 048751 205 NTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVT 241 (1004)
Q Consensus 205 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 241 (1004)
..+..++......+....|+.++++|.+.|..|..+.
T Consensus 249 ~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 249 EFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 3444555555555556788888888888887765553
No 490
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=20.64 E-value=70 Score=28.62 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=26.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 891 YAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVG 926 (1004)
Q Consensus 891 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~ 926 (1004)
..+...|.-.+|..+|.+|++.|-.||. |+.|+.
T Consensus 103 ~tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 103 QTLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred cchhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 3566778889999999999999999975 444443
No 491
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=20.30 E-value=7.6e+02 Score=23.84 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=13.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 048751 718 ISLYAELGMVTEAESMFNDIRE 739 (1004)
Q Consensus 718 ~~~~~~~g~~~~A~~~~~~~~~ 739 (1004)
+-.|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3455666666666666666555
No 492
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=20.29 E-value=1.6e+03 Score=27.31 Aligned_cols=67 Identities=9% Similarity=0.007 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HcCCChHHHHHHHHHHHh
Q 048751 532 QKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMF---AGGDLMGQAVDLLAEMQG 599 (1004)
Q Consensus 532 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~---~~~~~~~~a~~~~~~m~~ 599 (1004)
..-+...++.||..+.+.|+.++....-.+|.+.-.. +...|...+... ...+...++..+|++.+.
T Consensus 109 ~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl-~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~ 178 (881)
T KOG0128|consen 109 NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPL-PPHLWLEWLKDELSMTQSEERKEVEELFEKALG 178 (881)
T ss_pred cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc
Confidence 3344445556666666666666665555555554322 223333322222 133455555555555544
No 493
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.22 E-value=8.1e+02 Score=23.85 Aligned_cols=62 Identities=10% Similarity=0.167 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC--CCCcCHHHHHHHHH-HHHccC--CHHHHHHHHHHHHHC
Q 048751 329 YNTLIDLYGKAGRLQDAANVFAEMLKS--GVAVDTITFNTMIY-TCGSHG--NLSEAEALFCMMEES 390 (1004)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~-~~~~~g--~~~~A~~l~~~m~~~ 390 (1004)
+...+-.....|++++|.+-++++.+. .++--...|..+.. +++..+ .+-+|.-++......
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 344444455667788877777766442 11112334444444 444433 355666666555543
No 494
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.21 E-value=1.8e+03 Score=28.11 Aligned_cols=25 Identities=8% Similarity=0.162 Sum_probs=20.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 887 NVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 887 ~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
+.|++.|...+++.+|.++.-+..+
T Consensus 1374 aellrllVdy~rl~eA~dLlsEive 1398 (1480)
T KOG4521|consen 1374 AELLRLLVDYERLSEALDLLSEIVE 1398 (1480)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5678888899999999988877775
Done!