Query 048751
Match_columns 1004
No_of_seqs 800 out of 4731
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 22:23:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.5E-38 1.2E-42 375.7 42.8 498 166-754 81-593 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.1E-37 7.3E-42 369.0 44.6 474 143-670 94-579 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-25 5.4E-30 250.5 48.8 362 473-843 6-367 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.2E-25 1.1E-29 247.9 49.2 382 332-759 5-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.4E-27 8.2E-32 268.7 24.0 215 187-479 8-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 2.8E-26 9.6E-31 259.9 26.5 189 536-724 26-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 7.1E-22 2.4E-26 230.1 45.2 441 326-775 6-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.6E-22 5.5E-27 235.5 38.2 443 397-918 7-482 (514)
9 1xi4_A Clathrin heavy chain; a 99.9 1.1E-17 3.6E-22 198.8 73.3 288 645-978 989-1305(1630)
10 1xi4_A Clathrin heavy chain; a 99.9 7.3E-17 2.5E-21 191.7 77.8 567 330-976 989-1586(1630)
11 3fp2_A TPR repeat-containing p 99.9 6.2E-21 2.1E-25 223.5 42.6 436 326-775 25-492 (537)
12 3fp2_A TPR repeat-containing p 99.9 1.6E-21 5.4E-26 228.5 36.5 254 656-917 217-494 (537)
13 2y4t_A DNAJ homolog subfamily 99.9 1.3E-20 4.6E-25 215.1 40.7 323 571-925 26-370 (450)
14 2y4t_A DNAJ homolog subfamily 99.9 3E-20 1E-24 212.2 42.5 314 487-808 13-357 (450)
15 3ieg_A DNAJ homolog subfamily 99.8 5.7E-18 2E-22 186.5 39.5 326 609-965 6-352 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 7E-18 2.4E-22 185.8 39.0 296 470-773 7-334 (359)
17 3hym_B Cell division cycle pro 99.8 2.6E-17 8.7E-22 179.0 33.1 202 603-808 19-221 (330)
18 2xm6_A Protein corresponding t 99.8 1.6E-15 5.5E-20 174.5 49.4 368 570-964 38-451 (490)
19 2xm6_A Protein corresponding t 99.8 2.4E-15 8.3E-20 173.0 49.3 368 345-775 26-433 (490)
20 3hym_B Cell division cycle pro 99.8 3.9E-17 1.3E-21 177.5 32.3 292 465-796 21-321 (330)
21 2ooe_A Cleavage stimulation fa 99.8 9.8E-16 3.4E-20 178.2 45.2 213 729-944 256-489 (530)
22 4g1t_A Interferon-induced prot 99.8 3.8E-16 1.3E-20 179.3 38.2 336 572-921 95-469 (472)
23 2ooe_A Cleavage stimulation fa 99.8 2.7E-15 9.1E-20 174.6 45.4 428 349-808 2-491 (530)
24 1fch_A Peroxisomal targeting s 99.8 6.2E-17 2.1E-21 179.1 26.6 309 511-843 36-358 (368)
25 1fch_A Peroxisomal targeting s 99.8 1.1E-16 3.9E-21 177.0 26.6 305 441-804 35-354 (368)
26 4eqf_A PEX5-related protein; a 99.8 2.2E-17 7.6E-22 182.4 20.4 262 712-979 66-353 (365)
27 1b89_A Protein (clathrin heavy 99.7 2.8E-17 9.7E-22 176.2 19.6 385 137-662 7-409 (449)
28 1b89_A Protein (clathrin heavy 99.7 2.2E-17 7.5E-22 177.1 18.2 379 181-700 15-412 (449)
29 4eqf_A PEX5-related protein; a 99.7 1.6E-16 5.5E-21 175.5 22.2 229 573-805 101-352 (365)
30 4g1t_A Interferon-induced prot 99.7 4.7E-15 1.6E-19 170.2 33.2 384 360-775 50-460 (472)
31 3mkr_A Coatomer subunit epsilo 99.7 1.7E-15 5.9E-20 160.1 25.9 273 649-973 7-285 (291)
32 3spa_A Mtrpol, DNA-directed RN 99.7 2.4E-17 8.2E-22 190.0 11.1 150 326-480 127-286 (1134)
33 3cv0_A Peroxisome targeting si 99.7 5.4E-15 1.8E-19 160.3 28.3 261 539-804 24-310 (327)
34 3cv0_A Peroxisome targeting si 99.7 4.4E-15 1.5E-19 160.9 27.6 280 465-772 20-313 (327)
35 3mkr_A Coatomer subunit epsilo 99.7 1E-14 3.6E-19 154.0 29.5 271 510-801 9-286 (291)
36 3spa_A Mtrpol, DNA-directed RN 99.6 4.6E-16 1.6E-20 179.5 10.1 123 358-480 124-250 (1134)
37 2pl2_A Hypothetical conserved 99.6 1.4E-13 4.8E-18 138.7 22.1 198 675-910 4-212 (217)
38 3uq3_A Heat shock protein STI1 99.6 3.7E-13 1.3E-17 139.9 25.5 222 539-773 8-235 (258)
39 3uq3_A Heat shock protein STI1 99.6 5.9E-13 2E-17 138.4 26.5 223 572-807 6-234 (258)
40 3e4b_A ALGK; tetratricopeptide 99.6 9.2E-14 3.1E-18 157.1 21.4 203 621-841 89-313 (452)
41 2pl2_A Hypothetical conserved 99.6 3.3E-13 1.1E-17 135.9 23.1 208 604-840 3-210 (217)
42 2h6f_A Protein farnesyltransfe 99.6 8.4E-13 2.9E-17 144.1 27.4 252 678-966 99-366 (382)
43 1xnf_A Lipoprotein NLPI; TPR, 99.5 2E-13 6.7E-18 143.7 20.4 118 655-773 19-139 (275)
44 3u4t_A TPR repeat-containing p 99.5 5.4E-13 1.8E-17 140.1 23.1 242 716-961 8-263 (272)
45 3e4b_A ALGK; tetratricopeptide 99.5 4.2E-13 1.4E-17 151.6 23.7 341 438-810 10-388 (452)
46 3u4t_A TPR repeat-containing p 99.5 1.5E-12 5.1E-17 136.7 26.0 251 643-929 5-266 (272)
47 1xnf_A Lipoprotein NLPI; TPR, 99.5 7.8E-13 2.7E-17 139.1 22.2 245 690-941 19-269 (275)
48 2ho1_A Type 4 fimbrial biogene 99.5 9.5E-12 3.3E-16 128.8 28.5 201 606-809 37-238 (252)
49 2h6f_A Protein farnesyltransfe 99.5 3.8E-12 1.3E-16 139.0 26.4 181 573-758 133-322 (382)
50 1ouv_A Conserved hypothetical 99.5 4.6E-11 1.6E-15 125.4 33.9 225 605-846 5-253 (273)
51 4e6h_A MRNA 3'-END-processing 99.5 3.4E-10 1.2E-14 131.8 44.1 451 448-924 49-580 (679)
52 1ouv_A Conserved hypothetical 99.5 4.1E-11 1.4E-15 125.7 33.2 222 537-775 7-252 (273)
53 2vq2_A PILW, putative fimbrial 99.5 1.4E-11 4.9E-16 124.7 28.6 202 605-808 7-210 (225)
54 2vq2_A PILW, putative fimbrial 99.5 1E-11 3.4E-16 125.9 26.5 96 712-808 9-105 (225)
55 2ho1_A Type 4 fimbrial biogene 99.5 1.3E-11 4.3E-16 127.9 27.2 168 606-775 71-239 (252)
56 4e6h_A MRNA 3'-END-processing 99.5 1.1E-09 3.9E-14 127.4 45.8 231 589-823 327-582 (679)
57 2q7f_A YRRB protein; TPR, prot 99.5 4.6E-12 1.6E-16 130.3 22.9 165 606-773 57-221 (243)
58 2q7f_A YRRB protein; TPR, prot 99.5 4.8E-12 1.6E-16 130.1 22.2 218 534-756 21-238 (243)
59 3sf4_A G-protein-signaling mod 99.5 2E-12 6.7E-17 144.8 20.7 303 638-969 6-363 (406)
60 3sf4_A G-protein-signaling mod 99.4 4E-12 1.4E-16 142.2 21.5 304 603-935 6-364 (406)
61 4a1s_A PINS, partner of inscut 99.4 3.8E-12 1.3E-16 142.8 21.2 270 642-945 49-370 (411)
62 4a1s_A PINS, partner of inscut 99.4 3.4E-12 1.2E-16 143.2 20.4 277 606-911 48-371 (411)
63 3vtx_A MAMA; tetratricopeptide 99.4 6.3E-11 2.2E-15 115.7 24.6 166 605-773 4-169 (184)
64 3vtx_A MAMA; tetratricopeptide 99.4 3.9E-11 1.3E-15 117.3 22.8 171 710-918 4-174 (184)
65 3ro2_A PINS homolog, G-protein 99.4 9.7E-12 3.3E-16 134.8 20.3 272 678-983 7-333 (338)
66 3ro2_A PINS homolog, G-protein 99.4 1.3E-11 4.4E-16 133.9 20.4 272 641-946 5-331 (338)
67 3nf1_A KLC 1, kinesin light ch 99.4 1.4E-11 4.8E-16 132.0 18.9 243 642-911 28-306 (311)
68 4abn_A Tetratricopeptide repea 99.4 2.3E-11 8E-16 138.2 20.8 212 691-941 83-315 (474)
69 2ond_A Cleavage stimulation fa 99.4 3.9E-10 1.3E-14 120.4 29.3 213 728-945 33-268 (308)
70 3ulq_A Response regulator aspa 99.3 6E-11 2.1E-15 131.4 23.3 300 651-986 22-372 (383)
71 4abn_A Tetratricopeptide repea 99.3 3.8E-11 1.3E-15 136.5 21.7 211 588-804 85-316 (474)
72 3ulq_A Response regulator aspa 99.3 4.7E-11 1.6E-15 132.3 21.4 232 682-945 109-366 (383)
73 2ond_A Cleavage stimulation fa 99.3 1.3E-09 4.4E-14 116.4 31.3 219 588-809 33-270 (308)
74 3nf1_A KLC 1, kinesin light ch 99.2 2.1E-10 7.3E-15 122.7 19.4 167 572-738 28-222 (311)
75 1hz4_A MALT regulatory protein 99.2 4.2E-09 1.4E-13 116.1 28.8 160 613-772 21-201 (373)
76 1hz4_A MALT regulatory protein 99.2 2E-09 6.8E-14 118.7 25.9 272 644-945 17-320 (373)
77 3q15_A PSP28, response regulat 99.2 1.8E-09 6.1E-14 119.2 24.3 199 643-844 143-365 (378)
78 4gyw_A UDP-N-acetylglucosamine 99.2 7.3E-10 2.5E-14 130.8 22.1 165 606-773 9-173 (723)
79 3q15_A PSP28, response regulat 99.2 4.8E-09 1.7E-13 115.7 27.6 231 718-981 108-364 (378)
80 3as5_A MAMA; tetratricopeptide 99.2 1.9E-09 6.4E-14 105.0 21.5 161 644-807 11-171 (186)
81 3as5_A MAMA; tetratricopeptide 99.2 2.4E-09 8.1E-14 104.3 21.6 165 607-774 9-173 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.2 1E-09 3.5E-14 129.5 22.0 166 571-740 9-174 (723)
83 4i17_A Hypothetical protein; T 99.2 4.1E-09 1.4E-13 106.9 23.3 131 642-773 8-145 (228)
84 4i17_A Hypothetical protein; T 99.1 5E-09 1.7E-13 106.2 22.6 195 605-809 6-209 (228)
85 3edt_B KLC 2, kinesin light ch 99.1 8.2E-10 2.8E-14 116.1 15.1 132 677-808 44-197 (283)
86 3edt_B KLC 2, kinesin light ch 99.0 1.6E-09 5.5E-14 113.9 14.9 157 583-739 13-197 (283)
87 1qqe_A Vesicular transport pro 99.0 6.9E-09 2.4E-13 109.6 19.8 163 685-847 46-231 (292)
88 3dra_A Protein farnesyltransfe 99.0 2.4E-07 8.1E-12 96.6 27.0 236 693-960 50-300 (306)
89 3dra_A Protein farnesyltransfe 99.0 2E-07 7E-12 97.1 26.0 224 722-983 43-288 (306)
90 3qky_A Outer membrane assembly 98.9 4.9E-08 1.7E-12 101.2 20.8 207 711-937 15-251 (261)
91 3mv2_B Coatomer subunit epsilo 98.9 1.9E-07 6.5E-12 96.1 23.8 183 660-847 85-285 (310)
92 3mv2_B Coatomer subunit epsilo 98.9 1.6E-07 5.4E-12 96.7 23.0 78 730-807 85-163 (310)
93 2uy1_A Cleavage stimulation fa 98.9 3.5E-06 1.2E-10 95.3 36.5 125 677-808 287-412 (493)
94 1qqe_A Vesicular transport pro 98.9 3E-08 1E-12 104.6 18.4 206 621-843 32-268 (292)
95 3urz_A Uncharacterized protein 98.9 6.1E-08 2.1E-12 96.3 19.6 123 682-807 60-184 (208)
96 3qky_A Outer membrane assembly 98.9 5.1E-08 1.7E-12 101.1 19.8 61 715-775 152-225 (261)
97 3urz_A Uncharacterized protein 98.9 3.8E-08 1.3E-12 97.9 17.9 180 642-847 5-189 (208)
98 2uy1_A Cleavage stimulation fa 98.9 3.5E-06 1.2E-10 95.2 35.8 125 712-844 287-413 (493)
99 2fo7_A Synthetic consensus TPR 98.9 9E-08 3.1E-12 87.1 18.6 125 647-773 7-131 (136)
100 2fo7_A Synthetic consensus TPR 98.9 8.7E-08 3E-12 87.2 18.4 129 678-808 3-131 (136)
101 2pzi_A Probable serine/threoni 98.8 1.9E-08 6.4E-13 119.7 15.1 173 617-795 402-583 (681)
102 2yhc_A BAMD, UPF0169 lipoprote 98.8 4.2E-07 1.4E-11 91.6 22.5 58 750-809 152-213 (225)
103 2pzi_A Probable serine/threoni 98.8 3E-08 1E-12 117.9 16.2 174 582-760 402-583 (681)
104 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.9E-07 1E-11 92.7 21.1 207 605-848 3-217 (225)
105 2r5s_A Uncharacterized protein 98.8 4.3E-08 1.5E-12 94.5 14.2 159 646-807 11-171 (176)
106 4ga2_A E3 SUMO-protein ligase 98.8 1.7E-08 5.9E-13 94.2 10.1 81 682-763 37-117 (150)
107 3qou_A Protein YBBN; thioredox 98.8 1.5E-07 5.1E-12 98.9 18.2 167 638-807 114-282 (287)
108 3q7a_A Farnesyltransferase alp 98.8 1.2E-06 4.1E-11 92.1 24.4 224 723-984 66-333 (349)
109 2ifu_A Gamma-SNAP; membrane fu 98.8 1.3E-07 4.4E-12 100.6 17.3 196 689-910 4-222 (307)
110 3qou_A Protein YBBN; thioredox 98.8 1.4E-07 4.9E-12 99.0 17.4 167 603-773 114-283 (287)
111 4ga2_A E3 SUMO-protein ligase 98.8 2.5E-08 8.7E-13 93.0 10.0 144 613-760 4-149 (150)
112 3rjv_A Putative SEL1 repeat pr 98.8 3.8E-07 1.3E-11 90.8 19.2 161 640-809 17-197 (212)
113 3rjv_A Putative SEL1 repeat pr 98.7 7.6E-07 2.6E-11 88.6 20.6 177 589-776 4-199 (212)
114 2vsy_A XCC0866; transferase, g 98.7 4.4E-07 1.5E-11 106.0 20.0 154 619-775 2-158 (568)
115 2r5s_A Uncharacterized protein 98.7 5.7E-07 2E-11 86.5 17.1 163 467-633 7-171 (176)
116 2vsy_A XCC0866; transferase, g 98.7 4.7E-07 1.6E-11 105.8 19.7 165 584-752 2-169 (568)
117 2ifu_A Gamma-SNAP; membrane fu 98.6 1E-06 3.5E-11 93.5 19.8 197 584-807 4-222 (307)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.4E-06 8.2E-11 85.0 20.5 128 678-809 8-150 (213)
119 3dss_A Geranylgeranyl transfer 98.6 1.2E-05 4E-10 84.3 25.8 257 678-961 28-317 (331)
120 3q7a_A Farnesyltransferase alp 98.6 7.2E-06 2.5E-10 86.2 24.0 223 693-945 71-329 (349)
121 4gco_A Protein STI-1; structur 98.6 9.3E-07 3.2E-11 79.3 15.0 96 678-774 15-110 (126)
122 4gco_A Protein STI-1; structur 98.6 1.4E-06 4.7E-11 78.2 15.8 95 713-808 15-109 (126)
123 3u3w_A Transcriptional activat 98.6 1.1E-05 3.9E-10 84.8 24.9 95 713-807 157-264 (293)
124 2c2l_A CHIP, carboxy terminus 98.6 6.7E-07 2.3E-11 93.4 15.0 98 710-808 3-100 (281)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.6 3E-06 1E-10 84.3 19.1 127 644-775 9-151 (213)
126 1a17_A Serine/threonine protei 98.5 2.8E-06 9.6E-11 80.5 17.8 127 678-806 15-143 (166)
127 3u3w_A Transcriptional activat 98.5 8E-06 2.7E-10 86.0 23.0 162 717-911 81-265 (293)
128 2qfc_A PLCR protein; TPR, HTH, 98.5 1E-05 3.5E-10 85.2 23.5 163 643-806 77-263 (293)
129 4f3v_A ESX-1 secretion system 98.5 7.4E-07 2.5E-11 90.4 13.6 199 723-959 18-247 (282)
130 3gyz_A Chaperone protein IPGC; 98.5 1.5E-06 5.1E-11 80.5 14.4 103 710-815 35-137 (151)
131 3gyz_A Chaperone protein IPGC; 98.5 1.9E-06 6.6E-11 79.7 14.9 103 676-781 36-138 (151)
132 2c2l_A CHIP, carboxy terminus 98.5 6.9E-07 2.4E-11 93.4 13.1 99 675-774 3-101 (281)
133 1a17_A Serine/threonine protei 98.5 4.4E-06 1.5E-10 79.1 17.7 130 642-773 14-145 (166)
134 3dss_A Geranylgeranyl transfer 98.5 9.8E-05 3.4E-09 77.3 27.9 251 641-924 26-315 (331)
135 1na0_A Designed protein CTPR3; 98.4 7.6E-06 2.6E-10 72.8 16.9 94 679-773 12-105 (125)
136 3gw4_A Uncharacterized protein 98.4 1.8E-06 6.3E-11 85.1 13.8 95 712-806 27-133 (203)
137 2lni_A Stress-induced-phosphop 98.4 4.5E-06 1.6E-10 75.4 15.4 116 676-793 16-131 (133)
138 4f3v_A ESX-1 secretion system 98.4 1.4E-06 4.6E-11 88.5 12.4 211 754-985 16-240 (282)
139 2qfc_A PLCR protein; TPR, HTH, 98.4 1.9E-05 6.6E-10 83.0 22.0 166 678-843 77-265 (293)
140 2vyi_A SGTA protein; chaperone 98.4 5.1E-06 1.7E-10 74.7 15.2 114 679-794 15-128 (131)
141 2vgx_A Chaperone SYCD; alterna 98.4 1.3E-06 4.5E-11 81.0 11.2 98 710-808 20-117 (148)
142 1na0_A Designed protein CTPR3; 98.4 1E-05 3.6E-10 71.9 17.0 117 641-759 9-125 (125)
143 2e2e_A Formate-dependent nitri 98.4 3.5E-06 1.2E-10 81.0 14.7 120 688-809 22-144 (177)
144 1p5q_A FKBP52, FK506-binding p 98.4 6.1E-06 2.1E-10 88.6 17.7 145 641-807 147-292 (336)
145 2vgx_A Chaperone SYCD; alterna 98.4 2E-06 6.9E-11 79.7 11.8 100 675-775 20-119 (148)
146 4gcn_A Protein STI-1; structur 98.4 4.9E-06 1.7E-10 74.7 14.0 106 712-819 9-120 (127)
147 2vyi_A SGTA protein; chaperone 98.4 7.4E-06 2.5E-10 73.6 15.5 119 641-761 12-130 (131)
148 2e2e_A Formate-dependent nitri 98.4 2.4E-06 8.2E-11 82.2 12.8 121 653-775 22-145 (177)
149 3gw4_A Uncharacterized protein 98.4 2.4E-06 8.3E-11 84.2 12.8 162 722-911 3-175 (203)
150 2lni_A Stress-induced-phosphop 98.4 6.4E-06 2.2E-10 74.4 14.4 119 640-760 15-133 (133)
151 1p5q_A FKBP52, FK506-binding p 98.4 7.3E-06 2.5E-10 88.0 17.1 146 605-772 146-292 (336)
152 3upv_A Heat shock protein STI1 98.3 1E-05 3.5E-10 72.5 14.7 94 679-773 7-100 (126)
153 2fbn_A 70 kDa peptidylprolyl i 98.3 1.4E-06 4.9E-11 85.6 9.2 127 679-806 41-183 (198)
154 3upv_A Heat shock protein STI1 98.3 1.7E-05 5.9E-10 70.9 14.8 98 711-809 4-101 (126)
155 2xcb_A PCRH, regulatory protei 98.3 1.2E-05 4.2E-10 73.7 13.9 96 712-808 19-114 (142)
156 1elw_A TPR1-domain of HOP; HOP 98.2 3.1E-05 1.1E-09 67.9 15.9 93 680-773 8-100 (118)
157 4gcn_A Protein STI-1; structur 98.2 1.9E-05 6.4E-10 70.8 14.3 104 678-784 10-120 (127)
158 2xcb_A PCRH, regulatory protei 98.2 1.1E-05 3.7E-10 74.1 12.8 98 677-775 19-116 (142)
159 1elw_A TPR1-domain of HOP; HOP 98.2 4.1E-05 1.4E-09 67.1 16.2 99 710-809 3-101 (118)
160 3q49_B STIP1 homology and U bo 98.2 3.2E-05 1.1E-09 70.3 15.2 99 709-808 7-105 (137)
161 3q49_B STIP1 homology and U bo 98.2 2.4E-05 8.3E-10 71.1 14.4 100 674-774 7-106 (137)
162 3sz7_A HSC70 cochaperone (SGT) 98.2 2.7E-05 9.1E-10 73.6 14.8 97 711-808 11-107 (164)
163 3sz7_A HSC70 cochaperone (SGT) 98.2 3.2E-05 1.1E-09 73.0 15.2 100 675-775 10-109 (164)
164 2fbn_A 70 kDa peptidylprolyl i 98.2 3.2E-05 1.1E-09 75.7 15.6 131 642-773 39-185 (198)
165 1hxi_A PEX5, peroxisome target 98.2 1.5E-05 5.2E-10 70.7 11.8 91 716-807 22-112 (121)
166 1hxi_A PEX5, peroxisome target 98.2 1.7E-05 5.7E-10 70.4 12.0 96 679-775 20-115 (121)
167 1elr_A TPR2A-domain of HOP; HO 98.2 2E-05 7E-10 70.7 12.8 57 716-772 9-65 (131)
168 2kck_A TPR repeat; tetratricop 98.1 1.4E-05 4.7E-10 69.5 10.8 95 713-808 8-105 (112)
169 1elr_A TPR2A-domain of HOP; HO 98.1 2.3E-05 8E-10 70.3 12.7 110 676-788 4-120 (131)
170 2kck_A TPR repeat; tetratricop 98.1 2.1E-05 7.3E-10 68.2 11.3 98 677-775 7-107 (112)
171 2dba_A Smooth muscle cell asso 98.1 8.6E-05 2.9E-09 68.3 15.7 97 676-774 28-128 (148)
172 2dba_A Smooth muscle cell asso 98.1 0.00011 3.7E-09 67.6 16.4 113 640-755 27-143 (148)
173 4b4t_Q 26S proteasome regulato 98.0 0.00041 1.4E-08 77.5 23.2 167 502-668 57-243 (434)
174 2xev_A YBGF; tetratricopeptide 98.0 0.00015 5.1E-09 64.9 15.4 92 683-774 9-105 (129)
175 2hr2_A Hypothetical protein; a 98.0 0.00011 3.7E-09 67.1 13.5 96 713-808 13-130 (159)
176 1dce_A Protein (RAB geranylger 98.0 0.00036 1.2E-08 80.1 21.1 187 692-901 45-244 (567)
177 2xev_A YBGF; tetratricopeptide 98.0 0.00016 5.3E-09 64.7 14.6 95 715-809 6-105 (129)
178 2hr2_A Hypothetical protein; a 97.9 0.00011 3.8E-09 67.0 13.1 94 680-773 15-130 (159)
179 4b4t_Q 26S proteasome regulato 97.9 0.00022 7.6E-09 79.7 19.0 56 613-668 11-82 (434)
180 3ro3_A PINS homolog, G-protein 97.9 5.9E-05 2E-09 70.6 11.9 95 713-807 51-156 (164)
181 3rkv_A Putative peptidylprolyl 97.9 0.00012 4.3E-09 68.7 14.0 68 711-780 63-130 (162)
182 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.0001 3.4E-09 82.8 15.6 163 620-806 248-412 (457)
183 3k9i_A BH0479 protein; putativ 97.9 2E-05 6.9E-10 69.4 7.6 87 689-775 3-91 (117)
184 3ro3_A PINS homolog, G-protein 97.9 8.4E-05 2.9E-09 69.5 11.8 130 644-773 12-157 (164)
185 3rkv_A Putative peptidylprolyl 97.9 0.00015 5.1E-09 68.2 13.3 96 713-809 13-126 (162)
186 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00014 4.7E-09 81.7 15.2 146 605-772 267-413 (457)
187 1ihg_A Cyclophilin 40; ppiase 97.9 0.00012 4.2E-09 79.3 14.0 139 641-800 223-361 (370)
188 1wao_1 Serine/threonine protei 97.9 3.4E-05 1.2E-09 87.0 10.0 119 684-804 14-134 (477)
189 1ihg_A Cyclophilin 40; ppiase 97.8 0.00018 6.1E-09 78.0 14.8 140 606-766 223-362 (370)
190 1wao_1 Serine/threonine protei 97.8 6E-05 2.1E-09 85.0 10.6 121 647-769 12-134 (477)
191 3k9i_A BH0479 protein; putativ 97.7 4.3E-05 1.5E-09 67.2 6.5 85 445-529 4-90 (117)
192 1dce_A Protein (RAB geranylger 97.7 0.002 6.8E-08 73.9 21.6 136 622-760 89-241 (567)
193 1zu2_A Mitochondrial import re 97.7 8.1E-05 2.8E-09 67.7 7.3 92 831-925 18-131 (158)
194 3n71_A Histone lysine methyltr 97.6 0.00011 3.7E-09 82.2 9.6 87 721-807 319-420 (490)
195 1zu2_A Mitochondrial import re 97.6 0.00015 5.2E-09 65.9 8.3 93 690-785 16-129 (158)
196 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00013 4.5E-09 78.1 9.2 147 641-808 179-327 (338)
197 2kat_A Uncharacterized protein 97.6 0.00032 1.1E-08 61.2 10.2 79 694-773 3-81 (115)
198 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00012 4E-09 78.5 8.6 150 606-775 179-329 (338)
199 3n71_A Histone lysine methyltr 97.6 0.00019 6.4E-09 80.3 10.4 102 883-984 351-466 (490)
200 2l6j_A TPR repeat-containing p 97.5 0.00024 8.2E-09 61.4 8.6 89 710-800 3-98 (111)
201 1na3_A Designed protein CTPR2; 97.5 0.00084 2.9E-08 55.3 11.6 81 711-792 9-89 (91)
202 2l6j_A TPR repeat-containing p 97.4 0.0001 3.4E-09 63.9 4.6 94 675-769 3-102 (111)
203 2kat_A Uncharacterized protein 97.4 0.0012 4E-08 57.5 11.3 79 729-808 3-81 (115)
204 1na3_A Designed protein CTPR2; 97.4 0.0016 5.3E-08 53.6 11.5 83 676-759 9-91 (91)
205 1klx_A Cysteine rich protein B 97.3 0.0049 1.7E-07 55.7 14.5 110 656-775 10-127 (138)
206 1klx_A Cysteine rich protein B 97.2 0.0076 2.6E-07 54.3 15.0 112 690-811 9-128 (138)
207 3ma5_A Tetratricopeptide repea 97.2 0.0015 5E-08 55.2 9.6 64 710-773 6-69 (100)
208 3u64_A Protein TP_0956; tetrat 97.1 0.023 7.8E-07 56.9 18.1 112 862-983 177-299 (301)
209 3ma5_A Tetratricopeptide repea 97.0 0.0029 1E-07 53.3 9.5 67 741-808 3-69 (100)
210 2kc7_A BFR218_protein; tetratr 96.8 0.0042 1.4E-07 52.1 8.3 59 717-775 6-65 (99)
211 3ly7_A Transcriptional activat 96.6 0.054 1.8E-06 56.7 16.3 68 779-848 276-343 (372)
212 3bee_A Putative YFRE protein; 96.5 0.019 6.5E-07 47.3 10.3 68 709-776 4-74 (93)
213 2kc7_A BFR218_protein; tetratr 96.5 0.0069 2.4E-07 50.7 7.7 82 682-772 6-88 (99)
214 3qww_A SET and MYND domain-con 96.4 0.0081 2.8E-07 65.8 9.6 44 868-911 367-410 (433)
215 3ly7_A Transcriptional activat 96.4 0.041 1.4E-06 57.6 14.0 78 740-821 272-349 (372)
216 3qww_A SET and MYND domain-con 96.3 0.0049 1.7E-07 67.6 7.0 63 883-945 340-409 (433)
217 3u64_A Protein TP_0956; tetrat 96.2 0.34 1.2E-05 48.5 18.8 90 727-816 179-278 (301)
218 3qwp_A SET and MYND domain-con 96.2 0.02 7E-07 62.8 11.1 97 789-911 296-399 (429)
219 3qwp_A SET and MYND domain-con 96.1 0.019 6.6E-07 63.0 10.2 60 748-807 332-398 (429)
220 1pc2_A Mitochondria fission pr 95.8 0.056 1.9E-06 48.5 10.2 81 727-808 14-99 (152)
221 3mkq_A Coatomer beta'-subunit; 95.7 0.21 7.1E-06 60.6 18.5 129 645-805 633-761 (814)
222 1pc2_A Mitochondria fission pr 95.6 0.1 3.5E-06 46.8 11.2 84 693-779 15-103 (152)
223 4ady_A RPN2, 26S proteasome re 95.6 5.4 0.00018 47.3 40.5 191 615-809 383-589 (963)
224 3mkq_A Coatomer beta'-subunit; 95.5 0.33 1.1E-05 58.7 19.5 123 334-489 607-730 (814)
225 3bee_A Putative YFRE protein; 95.3 0.1 3.5E-06 42.8 9.6 64 466-529 6-72 (93)
226 4ady_A RPN2, 26S proteasome re 95.2 6.9 0.00024 46.4 44.0 26 329-354 233-258 (963)
227 2v5f_A Prolyl 4-hydroxylase su 95.0 0.2 6.9E-06 42.1 10.8 36 712-747 47-82 (104)
228 3mkq_B Coatomer subunit alpha; 94.8 0.59 2E-05 43.0 13.8 102 685-806 14-115 (177)
229 3mkq_B Coatomer subunit alpha; 94.6 1.7 5.8E-05 40.0 16.3 99 475-594 14-112 (177)
230 2v5f_A Prolyl 4-hydroxylase su 94.5 0.36 1.2E-05 40.5 11.1 65 710-774 4-75 (104)
231 3lvg_A Clathrin heavy chain 1; 94.4 0.006 2E-07 64.9 -0.6 236 168-451 82-324 (624)
232 4h7y_A Dual specificity protei 94.1 0.41 1.4E-05 42.2 10.4 111 640-752 12-135 (161)
233 1nzn_A CGI-135 protein, fissio 93.5 0.57 2E-05 40.3 10.1 87 722-809 12-103 (126)
234 3lvg_A Clathrin heavy chain 1; 92.6 3E-05 1E-09 81.9 -21.2 119 640-765 198-324 (624)
235 1nzn_A CGI-135 protein, fissio 92.2 1.1 3.7E-05 38.5 10.1 73 674-746 33-109 (126)
236 4h7y_A Dual specificity protei 92.0 1.5 5.2E-05 38.6 10.8 58 858-916 70-127 (161)
237 1wy6_A Hypothetical protein ST 90.9 7.2 0.00025 33.6 15.3 62 715-776 95-156 (172)
238 3lpz_A GET4 (YOR164C homolog); 90.7 16 0.00056 37.4 21.7 173 364-598 38-214 (336)
239 1wy6_A Hypothetical protein ST 89.5 9.6 0.00033 32.9 16.7 33 534-566 123-155 (172)
240 2ff4_A Probable regulatory pro 89.0 6.7 0.00023 42.0 15.4 77 886-964 174-256 (388)
241 4gns_B Protein CSD3, chitin bi 88.2 2 6.7E-05 50.0 11.0 84 881-967 611-708 (754)
242 2wpv_A GET4, UPF0363 protein Y 88.1 25 0.00085 35.8 20.7 173 364-598 36-215 (312)
243 4fhn_B Nucleoporin NUP120; pro 87.7 9.2 0.00032 47.7 17.6 86 745-832 899-988 (1139)
244 4b4t_P 26S proteasome regulato 87.7 35 0.0012 37.1 20.8 95 679-773 140-246 (445)
245 4gns_B Protein CSD3, chitin bi 87.2 3.3 0.00011 48.1 12.0 127 645-771 252-397 (754)
246 2ff4_A Probable regulatory pro 87.0 2.5 8.6E-05 45.4 10.4 68 715-782 175-247 (388)
247 1y8m_A FIS1; mitochondria, unk 86.5 3.8 0.00013 35.8 9.1 49 866-916 60-108 (144)
248 3o48_A Mitochondria fission 1 85.6 16 0.00055 31.5 12.3 65 709-773 38-106 (134)
249 4b4t_P 26S proteasome regulato 83.8 53 0.0018 35.7 22.4 95 713-807 139-245 (445)
250 3ffl_A Anaphase-promoting comp 82.8 6.1 0.00021 35.6 9.0 116 717-845 26-152 (167)
251 3o48_A Mitochondria fission 1 82.7 11 0.00039 32.5 10.2 74 740-815 35-111 (134)
252 3ffl_A Anaphase-promoting comp 81.4 7.7 0.00026 35.0 9.1 118 856-986 28-155 (167)
253 1y8m_A FIS1; mitochondria, unk 80.9 28 0.00096 30.4 12.6 65 709-773 37-105 (144)
254 1zbp_A Hypothetical protein VP 79.0 4.4 0.00015 39.9 7.3 58 720-779 6-63 (273)
255 1v54_E Cytochrome C oxidase po 78.7 18 0.0006 29.4 9.2 61 691-751 25-85 (109)
256 1zbp_A Hypothetical protein VP 77.8 8.6 0.00029 37.9 9.0 106 865-983 14-130 (273)
257 1v54_E Cytochrome C oxidase po 77.3 12 0.00042 30.3 8.0 65 184-249 25-89 (109)
258 4fhn_B Nucleoporin NUP120; pro 76.9 53 0.0018 40.9 18.3 173 468-662 814-992 (1139)
259 3lpz_A GET4 (YOR164C homolog); 76.6 72 0.0025 32.7 23.0 80 394-492 134-213 (336)
260 3txn_A 26S proteasome regulato 75.5 87 0.003 33.1 24.5 58 750-807 104-166 (394)
261 3txn_A 26S proteasome regulato 73.5 97 0.0033 32.8 25.1 165 502-667 21-207 (394)
262 2wpv_A GET4, UPF0363 protein Y 70.9 95 0.0032 31.5 23.2 124 350-492 81-214 (312)
263 2y69_E Cytochrome C oxidase su 69.3 34 0.0012 29.4 9.2 62 691-752 68-129 (152)
264 2p58_C Putative type III secre 68.1 24 0.00081 28.5 7.5 79 147-234 21-99 (116)
265 1qsa_A Protein (soluble lytic 68.1 1.7E+02 0.0057 33.2 37.4 245 655-917 228-484 (618)
266 2y69_E Cytochrome C oxidase su 67.1 25 0.00086 30.2 8.0 62 187-249 71-132 (152)
267 4b4t_R RPN7, 26S proteasome re 65.0 24 0.00082 38.2 10.1 58 853-910 136-195 (429)
268 3esl_A Checkpoint serine/threo 64.0 54 0.0019 30.6 10.6 72 708-779 74-149 (202)
269 2uwj_G Type III export protein 63.8 23 0.00079 28.5 6.7 79 147-234 20-98 (115)
270 2p58_C Putative type III secre 60.3 42 0.0014 27.1 7.6 74 727-807 23-96 (116)
271 4b4t_R RPN7, 26S proteasome re 58.3 1.8E+02 0.006 31.3 15.5 61 468-528 133-196 (429)
272 2uwj_G Type III export protein 56.5 41 0.0014 27.1 6.9 51 752-808 46-96 (115)
273 1qsa_A Protein (soluble lytic 54.1 2.8E+02 0.0097 31.3 37.4 141 329-480 10-150 (618)
274 4b4t_S RPN3, 26S proteasome re 49.0 1.2E+02 0.0042 33.2 11.8 69 780-848 231-303 (523)
275 3esl_A Checkpoint serine/threo 47.2 1.8E+02 0.0062 27.1 12.6 82 732-814 58-149 (202)
276 4a1g_A Mitotic checkpoint seri 42.2 1.4E+02 0.0049 26.4 9.2 49 730-778 84-134 (152)
277 4a1g_A Mitotic checkpoint seri 41.8 1.8E+02 0.006 25.8 9.7 73 162-237 61-134 (152)
278 3eiq_C Programmed cell death p 41.5 1.1E+02 0.0037 31.9 9.7 27 328-354 56-82 (358)
279 2wvi_A Mitotic checkpoint seri 40.8 2E+02 0.0069 25.8 10.2 50 730-779 79-130 (164)
280 3ltm_A Alpha-REP4; protein eng 37.5 2.5E+02 0.0086 26.0 17.9 189 623-833 18-206 (211)
281 2d2s_A Exocyst complex compone 37.1 2.6E+02 0.009 26.9 11.2 91 331-424 23-119 (235)
282 1k1a_A B-cell lymphoma 3-encod 35.7 2.5E+02 0.0084 26.6 11.4 85 176-264 13-101 (241)
283 1wdy_A 2-5A-dependent ribonucl 34.8 1.8E+02 0.0063 28.3 10.5 25 442-466 190-214 (285)
284 3eiq_C Programmed cell death p 32.4 80 0.0028 32.8 7.0 62 715-776 221-284 (358)
285 1k1a_A B-cell lymphoma 3-encod 31.8 1.6E+02 0.0056 27.9 9.2 84 332-419 12-99 (241)
286 2d2s_A Exocyst complex compone 30.2 2.2E+02 0.0075 27.5 9.3 30 952-981 90-119 (235)
287 4b4t_S RPN3, 26S proteasome re 30.1 1.4E+02 0.0048 32.7 8.6 25 678-702 233-257 (523)
288 3kae_A CDC27, possible protein 29.7 1.6E+02 0.0055 26.5 7.2 66 248-351 71-139 (242)
289 2nsz_A Programmed cell death p 29.3 2.4E+02 0.0083 24.0 8.5 65 328-393 9-75 (129)
290 3mv2_A Coatomer subunit alpha; 27.1 5E+02 0.017 26.2 16.2 169 786-987 34-241 (325)
291 2wvi_A Mitotic checkpoint seri 26.9 3.5E+02 0.012 24.3 11.9 53 762-814 77-130 (164)
292 1ya0_A SMG-7 transcript varian 26.1 3.4E+02 0.012 29.7 11.0 76 716-792 157-232 (497)
293 2zu6_B Programmed cell death p 25.1 4.7E+02 0.016 26.3 11.1 27 327-353 4-30 (307)
294 1wdy_A 2-5A-dependent ribonucl 25.0 2.2E+02 0.0075 27.7 9.0 78 368-449 152-234 (285)
295 4aez_C MAD3, mitotic spindle c 24.0 1.6E+02 0.0056 27.9 6.8 50 729-778 132-183 (223)
296 2ion_A PDCD4, programmed cell 23.4 3.4E+02 0.012 24.0 8.5 21 717-737 15-35 (152)
297 2qx5_A Nucleoporin NIC96; mRNA 23.1 8.6E+02 0.029 27.6 22.2 22 964-985 549-570 (661)
298 4aez_C MAD3, mitotic spindle c 22.8 2.6E+02 0.0088 26.6 7.9 52 186-237 131-183 (223)
299 2ion_A PDCD4, programmed cell 22.6 2.2E+02 0.0076 25.1 7.2 66 327-393 10-77 (152)
300 2nsz_A Programmed cell death p 22.3 3.6E+02 0.012 22.9 9.9 21 717-737 13-33 (129)
301 2r9g_A AAA ATPase, central reg 22.0 4.7E+02 0.016 24.3 9.1 92 577-669 17-116 (204)
302 2keb_A DNA polymerase subunit 21.7 2.9E+02 0.0098 22.2 6.5 56 901-958 27-87 (101)
303 2zu6_B Programmed cell death p 20.9 6.5E+02 0.022 25.3 13.4 65 328-393 168-234 (307)
304 2ijq_A Hypothetical protein; s 20.2 3.3E+02 0.011 24.3 7.7 51 182-232 45-103 (161)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-38 Score=375.73 Aligned_cols=498 Identities=11% Similarity=0.005 Sum_probs=282.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 048751 166 VPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTV 245 (1004)
Q Consensus 166 ~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 245 (1004)
.+++..|+.++..+.+.|++++|..+|++|.+ ..|+..++..++.+|.+.|++++|+.+|+++... .++..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 35788899999999999999999999999985 3567788889999999999999999999988654 6788899999
Q ss_pred HHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhccc------CCC
Q 048751 246 VRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDM------GNS 319 (1004)
Q Consensus 246 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 319 (1004)
+.+|.+.|++++|.++|+++. |. . .... ...
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~--------------------~~---------------------~--~~~~~~~~~~~~~ 193 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETN--------------------PF---------------------R--KDEKNANKLLMQD 193 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSC--------------------TT---------------------C------------CCC
T ss_pred HHHHHHHhhHHHHHHHHhccC--------------------Cc---------------------c--ccccccccccccc
Confidence 999999999999999886410 00 0 0000 000
Q ss_pred CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHH--HH-HHHHHHCCCCCCH
Q 048751 320 VRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAE--AL-FCMMEESRISPDT 396 (1004)
Q Consensus 320 ~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~--~l-~~~m~~~g~~p~~ 396 (1004)
...|.+..+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+...+...+..+.+. .+ +..+...+..+..
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 011345677777777777777777777777777765421 3444444544443332222211 11 4444444444445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Q 048751 397 KTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMY 476 (1004)
Q Consensus 397 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 476 (1004)
.+|+.++..|.+.|++++|.++|+++.+. .++..+|+.++..+.+.|++++|.++|+++.+.+.. +..++..++.++
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 349 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASL 349 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHH
Confidence 56666677777777777777777777654 366777777777777777777777777777655432 444455555555
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 048751 477 INEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAF 556 (1004)
Q Consensus 477 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 556 (1004)
...|++++|..+++++....+.+ ..+|+.++..|.+.|++++|.
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRHPEK------------------------------------AVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTS------------------------------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhCccc------------------------------------HHHHHHHHHHHHHhccHHHHH
Confidence 55555555555544444333333 333444444444444444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 048751 557 SLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAG 636 (1004)
Q Consensus 557 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 636 (1004)
++|+++.+... .+..+|+.++.++.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44444433211 123333333333333344444444444333322 2344455555555555555555555555554432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 048751 637 VEPNEVVYGSLINGFAATGKVEEALQYFRMMREC----GLWAN--QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPD 710 (1004)
Q Consensus 637 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 710 (1004)
+.+..+|+.++..|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.++ .+
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~ 549 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-ND 549 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-CC
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CC
Confidence 234555555555555555555555555555433 33343 34444555555555555555555554444331 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 048751 711 TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL 754 (1004)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 754 (1004)
..+|..++.+|.+.|++++|.+.|+++.+..|.+..++..+..+
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 44445555555555555555555555555544444444444443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-37 Score=368.97 Aligned_cols=474 Identities=10% Similarity=-0.031 Sum_probs=316.8
Q ss_pred HHhhhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 048751 143 LKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKE 222 (1004)
Q Consensus 143 l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 222 (1004)
+.+.++++.|+.+|+.+.. ..|+..+++.++.+|.+.|++++|..+|+++... +++..+++.++.+|.+.|++++
T Consensus 94 ~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 168 (597)
T 2xpi_A 94 ALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQG 168 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHH
Confidence 3357899999999999874 3578899999999999999999999999998643 6788999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhh--HHHhHHHHh
Q 048751 223 ALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFK--HFLSTELFR 300 (1004)
Q Consensus 223 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 300 (1004)
|+.+|+++. |+.. ...++.+.+..+. + .+.... ..+.....+
T Consensus 169 A~~~~~~~~-----~~~~----~~~~~~~~~~~~~--------------------------~-~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 169 ALNLLGETN-----PFRK----DEKNANKLLMQDG--------------------------G-IKLEASMCYLRGQVYTN 212 (597)
T ss_dssp HHHHHCSSC-----TTC--------------CCCS--------------------------S-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccC-----Cccc----ccccccccccccc--------------------------c-cchhHHHHHHHHHHHHH
Confidence 999998532 2220 0111111111100 0 111111 122333444
Q ss_pred cCCCCccccchh-hcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHH--H-HHHHHHCCCCcCHHHHHHHHHHHHccCC
Q 048751 301 TGGRNPISRNMG-LLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAAN--V-FAEMLKSGVAVDTITFNTMIYTCGSHGN 376 (1004)
Q Consensus 301 ~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 376 (1004)
.|.. ..++. +..+. ...|.+..++..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|+
T Consensus 213 ~g~~---~~A~~~~~~~~--~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 287 (597)
T 2xpi_A 213 LSNF---DRAKECYKEAL--MVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE 287 (597)
T ss_dssp TTCH---HHHHHHHHHHH--HHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH
T ss_pred cCCH---HHHHHHHHHHH--HhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch
Confidence 4422 22232 22221 2346667777777766655444333222 2 6666666666677788888999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 377 LSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIE 456 (1004)
Q Consensus 377 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (1004)
+++|.++|+++.+. +++..+|+.++.+|.+.|++++|..+|+++.+.+. .+..+|..++.++.+.|++++|.+++++
T Consensus 288 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 288 LRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999876 57999999999999999999999999999998653 3678899999999999999999999999
Q ss_pred HHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCH
Q 048751 457 MEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSV 536 (1004)
Q Consensus 457 m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 536 (1004)
+.+.. ..+..++..++.+|.+.|++++|.++|+++....+.+..++..++.+|.+.|++++|..+|+++.+. .+.+.
T Consensus 365 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 441 (597)
T 2xpi_A 365 LVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTH 441 (597)
T ss_dssp HHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCS
T ss_pred HHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Cccch
Confidence 98654 2356677888888888888888888888887766666666666666666666666666666666553 33455
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCCC--HHHHH
Q 048751 537 VEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGA----GFKPQ--CLTFS 610 (1004)
Q Consensus 537 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~--~~~~~ 610 (1004)
.+|+.++.+|.+.|++++|.++|+++.+... .+..+|+.++..+.+.|++++|.++|+++.+. +..|+ ..+|.
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 5666666666666666666666666655432 24555555555555555555555555555443 33444 44555
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 611 SVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMREC 670 (1004)
Q Consensus 611 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 670 (1004)
.++.+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|.+.|++++|.++|+++.+.
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 55555555555555555555554442 234455555555555555555555555555543
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.6e-25 Score=250.48 Aligned_cols=362 Identities=13% Similarity=0.069 Sum_probs=242.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCCh
Q 048751 473 MKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLY 552 (1004)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 552 (1004)
...+...|++++|.+.++++....|.+..++..++..+...|++++|...+...... .+.+...|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCH
Confidence 445556666777777666666666666667777777777777777777777666653 455666777777777777777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 048751 553 DKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEM 632 (1004)
Q Consensus 553 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 632 (1004)
++|+..|+++.+..+ .+..+|..+..++...|++++|...|+.+.+.. +.+...+..+...+...|++++|...|+++
T Consensus 84 ~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777766432 134566667777777777777777777766643 233445566666677777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 048751 633 RRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTV 712 (1004)
Q Consensus 633 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 712 (1004)
.+.. +.+..+|..+...+...|++++|+..|+++.+.++ .+...+..+...+...|++++|...+++.....+. +..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHH
Confidence 6652 33466777777777777777777777777776543 34566667777777777777777777776664432 566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFAT 792 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 792 (1004)
++..++.++.+.|++++|+..|+++.+..|.++.+|..++.++.+.|++++|+..++++.+... .+..++..+...+..
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHH
Confidence 6677777777777777777777777777777777777777777777777777777777776532 456677777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhh
Q 048751 793 NGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQ 843 (1004)
Q Consensus 793 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 843 (1004)
.|++++|...++++++. .+.+..++..+..++.+.|+.++|...++++++
T Consensus 318 ~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777777777543 223344566666666666666666665555544
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=3.2e-25 Score=247.94 Aligned_cols=382 Identities=15% Similarity=0.121 Sum_probs=213.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048751 332 LIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGN 411 (1004)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 411 (1004)
+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4556677778888887777776653 1234455555666777777777777777776653 3356677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHH
Q 048751 412 INAALRYYWKIREVGLFPD-SVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFK 490 (1004)
Q Consensus 412 ~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 490 (1004)
+++|...|+++.+. .|+ ..+|..+..++.+.|++++|.+.++++.+.
T Consensus 83 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------------------ 130 (388)
T 1w3b_A 83 LQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY------------------------------ 130 (388)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------------
Confidence 77777777777764 343 445666666666666666666666665543
Q ss_pred HhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 048751 491 KCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPD 570 (1004)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 570 (1004)
.|....++..++..+...|++++|...|.++... .+.+..+|+.+...+.+.|++++|+..|+++.+.++. +
T Consensus 131 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~ 202 (388)
T 1w3b_A 131 -----NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-F 202 (388)
T ss_dssp -----CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-C
T ss_pred -----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-c
Confidence 2333334444455555555555555555554442 3334455555555555555555555555555553321 3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048751 571 ECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLING 650 (1004)
Q Consensus 571 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 650 (1004)
...+..+...+...|++++|...+.++.... +.+..++..+...|.+.|++++|+..|+++.+.+ +.+..+|..+...
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANA 280 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3444445555555555555555555544432 2234455555555555555555555555555432 2234455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048751 651 FAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEA 730 (1004)
Q Consensus 651 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 730 (1004)
+.+.|++++|++.|+++.+.. +.+..++..+...+.+.|++++|...++++.+..+ .+..++..++.+|.+.|++++|
T Consensus 281 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555555442 23444555555555555555555555555544322 2344555555555555555555
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 048751 731 ESMFNDIREKGQVDAVSFAAMMYLYKTMG 759 (1004)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 759 (1004)
...|+++.+..|.+..+|..++..+...|
T Consensus 359 ~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 359 LMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 55555555555555555555555544443
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.4e-27 Score=268.67 Aligned_cols=215 Identities=13% Similarity=0.144 Sum_probs=154.5
Q ss_pred HHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHh
Q 048751 187 ELRLRWIEMAKNGVLPTN-NTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDW 265 (1004)
Q Consensus 187 ~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 265 (1004)
.+..+..++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||.+||++||.+|++.+....+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 445566677777765544 458899999999999999999999999999999999999999999876542110
Q ss_pred cccccccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHH
Q 048751 266 CLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDA 345 (1004)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A 345 (1004)
.+.+.++.|
T Consensus 81 -----------------------------------------------------------------------~~~~~l~~A 89 (501)
T 4g26_A 81 -----------------------------------------------------------------------SPNPGLSRG 89 (501)
T ss_dssp -----------------------------------------------------------------------SCCHHHHHH
T ss_pred -----------------------------------------------------------------------hhcchHHHH
Confidence 112345667
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048751 346 ANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREV 425 (1004)
Q Consensus 346 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 425 (1004)
.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..|||++|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhc
Q 048751 426 GLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINE 479 (1004)
Q Consensus 426 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 479 (1004)
|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..|+..++..++..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 777777777777777777777777777777777777777777777777777654
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.8e-26 Score=259.92 Aligned_cols=189 Identities=15% Similarity=0.213 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC---------hHHHHHHHHHHHhCCCCCCH
Q 048751 536 VVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDL---------MGQAVDLLAEMQGAGFKPQC 606 (1004)
Q Consensus 536 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~m~~~g~~~~~ 606 (1004)
...++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 345888999999999999999999999999999999999999999987654 68899999999999999999
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 607 LTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAY 686 (1004)
Q Consensus 607 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 686 (1004)
.+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 687 SKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
++.|+.++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999988764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.1e-22 Score=230.07 Aligned_cols=441 Identities=11% Similarity=0.003 Sum_probs=278.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSL 405 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 405 (1004)
...|..+...+.+.|++++|+..|+++.+.. |+..+|..+..++.+.|++++|.+.++++.+.+ +.+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 5678889999999999999999999999875 789999999999999999999999999999875 3366899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHH---HhcCCH
Q 048751 406 YADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMY---INEGLL 482 (1004)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~---~~~g~~ 482 (1004)
|.+.|++++|...|+++.+.+. ++......++..+........+.+.+..+...+..++........... ......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999998753 344444555555554444444444443333332222111111000000 000111
Q ss_pred HHHHHHHHHhhh-------cCCCCHHHHHHHHHHHHh---cCCHHHHHHHHhhhhh-----hcCC-------CCCHHHHH
Q 048751 483 HQAKIIFKKCQL-------DGGLSSKTLAAIIDVYAE---KGLWAEAETVFYGKRD-----LVGQ-------KKSVVEYN 540 (1004)
Q Consensus 483 ~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~~~-------~~~~~~~~ 540 (1004)
......+..... ..+.+...+..++..+.. .|++++|...|.++.+ .... +.+...|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111100 002224455555555554 6777777777776654 1101 22344566
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048751 541 VMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLG 620 (1004)
Q Consensus 541 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 620 (1004)
.+...+...|++++|...|+++.+... +..++..+...+...|++++|...++.+.+.. +.+..++..+...|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 667777777777777777777766543 36666667777777777777777777776643 345556667777777777
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 621 QLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYE 700 (1004)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 700 (1004)
++++|...|+++.+.. +.+...+..+...+...|++++|+.+++.+.+... .+..++..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777776643 33456666677777777777777777777666432 345566666677777777777777777
Q ss_pred HHHhCCCC-CC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 701 KMKEMEGG-PD----TVASNTMISLYAE---LGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 701 ~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
++.+.... ++ ..++..++.++.. .|++++|...|+++.+..|.+..++..++.+|...|++++|...++++.
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 66553221 11 2356666666766 6777777777777777666666777777777777777777777777776
Q ss_pred HCC
Q 048751 773 LSG 775 (1004)
Q Consensus 773 ~~~ 775 (1004)
+..
T Consensus 477 ~~~ 479 (514)
T 2gw1_A 477 DLA 479 (514)
T ss_dssp HHC
T ss_pred Hhc
Confidence 643
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.6e-22 Score=235.51 Aligned_cols=443 Identities=9% Similarity=-0.073 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Q 048751 397 KTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMY 476 (1004)
Q Consensus 397 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 476 (1004)
..+..+...+.+.|++++|+..|+++.+.. |+...|..+..++.+.|++++|...++++.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al------------------ 66 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKAL------------------ 66 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHh------------------
Confidence 344555555556666666666666665533 455555555555555555555555555544
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 048751 477 INEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAF 556 (1004)
Q Consensus 477 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 556 (1004)
...|.+..++..++.+|...|++++|...|..+... .+++......++..+........+.
T Consensus 67 -----------------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (514)
T 2gw1_A 67 -----------------ELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLN--GDFNDASIEPMLERNLNKQAMSKLK 127 (514)
T ss_dssp -----------------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSCCGGGTHHHHHHHHHHHHHHHHT
T ss_pred -----------------ccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCccchHHHHHHHHHHHHHHHHHH
Confidence 444455555666666666666666666666665543 2222222333333333322222333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC---------CCCHHHHHHHHHHHHH---cCCHhH
Q 048751 557 SLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGF---------KPQCLTFSSVIAAYAR---LGQLSN 624 (1004)
Q Consensus 557 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~---------~~~~~~~~~li~~~~~---~g~~~~ 624 (1004)
+.+..+...+..|+...+..................+...+..... +.+...+......+.. .|++++
T Consensus 128 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (514)
T 2gw1_A 128 EKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDK 207 (514)
T ss_dssp TC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHH
T ss_pred HHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHH
Confidence 3332222222222221111111000011111111111111111000 1123334444444443 677777
Q ss_pred HHHHHHHHHH-----cCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048751 625 AVDLFHEMRR-----AGV--------EPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGC 691 (1004)
Q Consensus 625 A~~~~~~m~~-----~g~--------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 691 (1004)
|...|+++.+ ..- +.+..++..+...+...|++++|+.+++.+.+.... ...+..+...+...|+
T Consensus 208 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~ 285 (514)
T 2gw1_A 208 ADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRND 285 (514)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCC
Confidence 7777777766 211 112455666777777777777777777777665432 6666677777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 692 LEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEM 771 (1004)
Q Consensus 692 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 771 (1004)
+++|...++.+.+.... +..++..++..+...|++++|...|+++.+..|.+..++..++.++...|++++|+..++++
T Consensus 286 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 364 (514)
T 2gw1_A 286 STEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEA 364 (514)
T ss_dssp CTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777665432 45566667777777777777777777777777767777777777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHcCCCcHHHHHHHHhHhhccC
Q 048751 772 KLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLL-PD----NGTFKVLFTILKKGGFPIEAVKQLQSSYQEVK 846 (1004)
Q Consensus 772 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 846 (1004)
.+... .+..++..+...+...|++++|...++++.+.... ++ ...+..+.
T Consensus 365 ~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~------------------------ 419 (514)
T 2gw1_A 365 KRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA------------------------ 419 (514)
T ss_dssp HHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHH------------------------
T ss_pred HHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH------------------------
Confidence 66432 23556666777777777777777777766442100 00 11333333
Q ss_pred CchhhhHHHHHHHH---HhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 048751 847 PYASEAIITSVYSV---VGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDI 918 (1004)
Q Consensus 847 ~~~~~~~~~~l~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 918 (1004)
..+.. .|++++|++.++++++.. |.+..++..++.+|...|++++|.+.|+++++ +.|+.
T Consensus 420 ---------~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~ 482 (514)
T 2gw1_A 420 ---------TLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTM 482 (514)
T ss_dssp ---------HHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSH
T ss_pred ---------HHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hcccc
Confidence 33444 555555666666666554 34677888888899999999999999998887 46653
No 9
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.91 E-value=1.1e-17 Score=198.77 Aligned_cols=288 Identities=12% Similarity=0.051 Sum_probs=178.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHH---------------------------HHHHHHcCCHHHH
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGL--WANQIVLTSL---------------------------IKAYSKIGCLEGA 695 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~l---------------------------i~~~~~~g~~~~A 695 (1004)
...+.+|...|.+.+|++++++..-.+- .-+...-+.+ ...+...|.+++|
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEA 1068 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHH
Confidence 4456677778888888888887773311 0111111212 3344556667777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 696 KQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
..+|++.. ......+.+ +...|++++|.++.+++ .++.+|..++.++...|++++|+..|.+.
T Consensus 1069 f~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A 1069 FAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred HHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence 77776642 111122222 22556677776666644 45778888888888888888888888664
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHH
Q 048751 776 LLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIIT 855 (1004)
Q Consensus 776 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 855 (1004)
.|...|..++.++.+.|++++|.+++...++.. +++.....++.+|.+.+++++...+++ .+.......++
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-----~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVG 1202 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-----CCCHHHHHHHH
Confidence 566777888888888888888888888776543 333333347777888877775444432 22223334566
Q ss_pred HHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 048751 856 SVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVE 935 (1004)
Q Consensus 856 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~ 935 (1004)
..+...|++++|...|.++ ..|..++.+|.+.|++++|++.+++.. |..+|..+..+|...|.+.
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHH
Confidence 6777888888888888864 368888888888888888888887762 3455555555555555555
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 048751 936 GVKRIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADLACQE 978 (1004)
Q Consensus 936 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 978 (1004)
.|...... +.-++..+..++..|.+.|.+++|..+++.
T Consensus 1268 LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1268 LAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55443321 222334444555555555555555555544
No 10
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.91 E-value=7.3e-17 Score=191.69 Aligned_cols=567 Identities=12% Similarity=0.104 Sum_probs=321.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 330 NTLIDLYGKAGRLQDAANVFAEMLKSGV--AVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYA 407 (1004)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 407 (1004)
...+++|...|.+.+|++++++..-.+- .-+...-+.|+.+..+. +..+..+..+..... + ..-+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence 5566677777777777777777763210 11223344444444444 445555555544421 1 233556666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHH
Q 048751 408 DVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKI 487 (1004)
Q Consensus 408 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 487 (1004)
..|.+++|..+|++... .....+.++. ..|++++|.++.++.. ++.+|..++.++...|++++|..
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 77777777777776421 1112222222 5566777777766441 35666777777777777777777
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 048751 488 IFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGT 567 (1004)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 567 (1004)
.|.+. .++..+..++..+.+.|++++|.+.+...++. .++....+.++.+|.+.+++++.... .+
T Consensus 1127 sYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~f----I~--- 1191 (1630)
T 1xi4_A 1127 SYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEF----IN--- 1191 (1630)
T ss_pred HHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHH----Hh---
Confidence 77654 55666777777777777777777777666552 23322233466677777766642222 21
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048751 568 WPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSL 647 (1004)
Q Consensus 568 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 647 (1004)
.++...|..+...|...|++++|..+|..+ ..|..+..+|++.|+++.|.+.+++. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 245556666777777777777777777664 25677777777777777777777655 245677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--C
Q 048751 648 INGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL--G 725 (1004)
Q Consensus 648 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g 725 (1004)
..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... .-....|+-+..+|++- +
T Consensus 1257 ~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence 77777777777776655432 2344556677777777777777777776666544 23444555555555543 3
Q ss_pred CHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHCCCCCCHHHHHHHH
Q 048751 726 MVTEAESMFNDIREKGQ-----VDAVSFAAMMYLYKTMGMLDEAIDAA-------------EEMKLSGLLRDVISYNQVM 787 (1004)
Q Consensus 726 ~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~p~~~~~~~l~ 787 (1004)
+..++.++|..-....+ .+...|..++..|.+.|+++.|+... .+.+. -..|+..|...+
T Consensus 1331 klmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai 1408 (1630)
T 1xi4_A 1331 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAI 1408 (1630)
T ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHH
Confidence 45556666554443322 35566777777777777777776322 11111 124566666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhH--
Q 048751 788 ACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNA-- 865 (1004)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 865 (1004)
..|. +...+++.-+...+...+. +...+..+.+.|...-+..+++...... ....+..+..++....+++
T Consensus 1409 ~Fyl--~~~P~~lndLl~~l~~rlD-----~~R~V~l~~~~~~l~lik~yl~~vq~~n-~~~Vneal~el~ieeed~~~L 1480 (1630)
T 1xi4_A 1409 QFYL--EFKPLLLNDLLMVLSPRLD-----HTRAVNYFSKVKQLPLVKPYLRSVQNHN-NKSVNESLNNLFITEEDYQAL 1480 (1630)
T ss_pred HHHH--hhChHHHHHHHHHhhhcCC-----hHHHHHHHHHcCChHHhHHHHHHHHHhc-chhhhHHHHHHhcCccchHHH
Confidence 6666 2233333333333322222 2345556667777777766666554322 2222333444444444433
Q ss_pred -hhhhHHH---HH-HhhhccC-Cchh-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 048751 866 -LALGTCE---TL-IKAEAYL-DSFI-YNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVK 938 (1004)
Q Consensus 866 -~A~~~~~---~~-~~~~~~~-~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~ 938 (1004)
..++.++ ++ +...... +..- --.....|.+.|+|.+|.+++.+.. . |.-.+.+..++|+.+.++
T Consensus 1481 r~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~---l------~~dAm~~a~~S~d~e~~e 1551 (1630)
T 1xi4_A 1481 RTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDS---L------YKDAMQYASESKDTELAE 1551 (1630)
T ss_pred HHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhcc---C------HHHHHHHHHHcCCHHHHH
Confidence 1222221 11 1110011 1111 2223345666788888888887642 2 234456777888888888
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 048751 939 RIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADLAC 976 (1004)
Q Consensus 939 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 976 (1004)
+++.-.... -+.++|-..+-.|...=+.+.++++.
T Consensus 1552 ~ll~~F~~~---~~~E~f~a~Ly~cy~l~~pd~vle~a 1586 (1630)
T 1xi4_A 1552 ELLQWFLQE---EKRECFGACLFTCYDLLRPDVVLETA 1586 (1630)
T ss_pred HHHHHHHhc---CChhHHHHHHHHHhccCCchHHHHHH
Confidence 887776532 34556666666666667777776653
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=6.2e-21 Score=223.47 Aligned_cols=436 Identities=14% Similarity=0.059 Sum_probs=324.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSL 405 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 405 (1004)
...|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.+ +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 5678999999999999999999999999875 3477889999999999999999999999999875 3367889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCCCcHHHHHHHHHhcCCHH
Q 048751 406 YADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGL--HIDEHSVPGVMKMYINEGLLH 483 (1004)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~g~~~ 483 (1004)
+...|++++|...|+ ... ..|+.. ...+..+...+...+|...++++..... ..........+..+....+..
T Consensus 103 ~~~~g~~~~A~~~~~-~~~--~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLS--LNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHh--cCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999996 333 223322 2234456666777889999998865421 112222344455566666666
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHh--------cCCHHHHHHHHhhhhhhcCCCCC-------HHHHHHHHHHHHc
Q 048751 484 QAKIIFKKCQLDGGLSSKTLAAIIDVYAE--------KGLWAEAETVFYGKRDLVGQKKS-------VVEYNVMIKAYGK 548 (1004)
Q Consensus 484 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~~li~~~~~ 548 (1004)
.+...+.......+........+...+.. .|++++|..+|+.+.+. .+.+ ..+|..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHh
Confidence 66655554444334333344444444333 35788888888888764 2222 2346667777888
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 048751 549 SKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDL 628 (1004)
Q Consensus 549 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 628 (1004)
.|++++|...|+++.+.. |+..++..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 899999999999988854 557788888888889999999999999888754 45677888888899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-
Q 048751 629 FHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEG- 707 (1004)
Q Consensus 629 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 707 (1004)
|+++.+.. +.+...|..+...+...|++++|+++++.+.+... .+...+..+...+...|++++|...++++.+...
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99888764 34567888888899999999999999998887643 4566888888888999999999999988765432
Q ss_pred ----CCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 708 ----GPDTVASNTMISLYAEL----------GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 708 ----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
......+..+..++... |++++|...|+++.+..|.+..++..++.+|...|++++|+..|+++.+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11223344556677777 8999999999999988888888999999999999999999999999888
Q ss_pred CC
Q 048751 774 SG 775 (1004)
Q Consensus 774 ~~ 775 (1004)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 54
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.6e-21 Score=228.54 Aligned_cols=254 Identities=10% Similarity=-0.007 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 048751 656 KVEEALQYFRMMRECGLWAN-------QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVT 728 (1004)
Q Consensus 656 ~~~~A~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 728 (1004)
++++|+.+++.+.+... .+ ..++..+...+...|++++|...++.+.+.. |+...+..+...+...|+++
T Consensus 217 ~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHH
Confidence 55566666666655432 11 1234445555566666666666666666543 33555666666666666666
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 729 EAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 729 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+|...|+++.+..|.+..+|..++.++...|++++|+..++++.+... .+...|..+...+...|++++|...++++.+
T Consensus 294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666432 2345566666666666666666666666654
Q ss_pred CCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchh-------hhHHHHHHHHH----------hhhHhhhhHH
Q 048751 809 QKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYAS-------EAIITSVYSVV----------GLNALALGTC 871 (1004)
Q Consensus 809 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-------~~~~~~l~~~~----------~~~~~A~~~~ 871 (1004)
.. +.+...+..+...+...|++++|...++++++..+.... ....+.++... |++++|++.+
T Consensus 373 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 373 KF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp HC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 31 223445555666666666666666666666654432211 11123455666 8999999999
Q ss_pred HHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048751 872 ETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD 917 (1004)
Q Consensus 872 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 917 (1004)
+++++.. |.+..+|..++.+|...|++++|++.|+++++ +.|+
T Consensus 452 ~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~ 494 (537)
T 3fp2_A 452 TKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LART 494 (537)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC--
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCC
Confidence 9998886 45778899999999999999999999999988 4553
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.3e-20 Score=215.11 Aligned_cols=323 Identities=13% Similarity=0.059 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048751 571 ECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLING 650 (1004)
Q Consensus 571 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 650 (1004)
...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..+|...|++++|+..|+++.+.+ +.+...+..++.+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 3445555555555555555555555555432 3344555555555555555555555555555442 2234555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 048751 651 FAATGKVEEALQYFRMMRECGLWANQ---IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMV 727 (1004)
Q Consensus 651 ~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 727 (1004)
|...|++++|.++|+.+.+... .+. ..+..++..+.. ..+..+...+.+.|++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCCH
Confidence 5555555555555555554321 122 333333222000 0011123335555666
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 728 TEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 728 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
++|...|+++.+..|.+..++..++.+|...|++++|+..++++.+... .+..+|..++..+...|++++|+..++++.
T Consensus 160 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666555555555566666666666666666666665554321 235555555556666666666666666554
Q ss_pred HCCCCCChhh-HHHH------------HHHHHcCCCcHHHHHHHHhHhhccCCchh-----hhHHHHHHHHHhhhHhhhh
Q 048751 808 TQKLLPDNGT-FKVL------------FTILKKGGFPIEAVKQLQSSYQEVKPYAS-----EAIITSVYSVVGLNALALG 869 (1004)
Q Consensus 808 ~~~~~p~~~~-~~~l------------~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~A~~ 869 (1004)
.. .|+... +..+ ...+.+.|++++|+..++++++..+..+. ...++.++...|++++|++
T Consensus 239 ~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred Hh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 32 232222 1111 33444444444444444444443333211 1222334455555555555
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 048751 870 TCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD-IVTCINLV 925 (1004)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l~ 925 (1004)
.++++++.. |.+..+|..++.+|...|++++|...|+++++ +.|+ ..++..+.
T Consensus 317 ~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 317 VCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 555555553 33566777777777777777777777777766 4563 44555554
No 14
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=3e-20 Score=212.24 Aligned_cols=314 Identities=10% Similarity=0.018 Sum_probs=204.5
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC
Q 048751 487 IIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLG 566 (1004)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 566 (1004)
..+.......|.+...+..++..|.+.|++++|...|..+.+. .+.+...|..+..++...|++++|+..|+++.+.+
T Consensus 13 ~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 13 LGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3344444445555556666666666666666666666665553 44455566666666666666666666666666544
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHHcCCHhHHHHHHHH
Q 048751 567 TWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQC---LTFSSV------------IAAYARLGQLSNAVDLFHE 631 (1004)
Q Consensus 567 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~ 631 (1004)
.. +..++..+..++...|++++|...|+.+.+.. +.+. ..+..+ ...+.+.|++++|+..|++
T Consensus 91 p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 91 MD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 32 45556666666666666666666666666532 1122 333333 3446777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 048751 632 MRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDT 711 (1004)
Q Consensus 632 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 711 (1004)
+.+.. +.+...+..++.+|...|++++|+++|+.+.+... .+..++..++..+...|++++|...++++.+.... +.
T Consensus 169 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 245 (450)
T 2y4t_A 169 ILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HK 245 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hH
Confidence 77653 34567777777777777777777777777766532 45677777777777777777777777777764432 34
Q ss_pred HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 712 VASNTM------------ISLYAELGMVTEAESMFNDIREKGQVDA----VSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 712 ~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
..+..+ +..+.+.|++++|...|+++.+..|.+. ..|..++.++.+.|++++|+..++++.+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 444443 6778888888888888888888777663 367778888888888888888888887754
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 776 LLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 776 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
. .+..+|..++.+|...|++++|...++++++
T Consensus 326 p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 326 P-DNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred c-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2 3477788888888888888888888888875
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=5.7e-18 Score=186.53 Aligned_cols=326 Identities=15% Similarity=0.083 Sum_probs=193.9
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048751 609 FSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSK 688 (1004)
Q Consensus 609 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 688 (1004)
+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|+..++.+.+... .+...+..+...+..
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHH
Confidence 3344444444444444444444444332 22344444444444444444444444444444321 233444444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCC--CCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEGG--PDTVASN------------TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL 754 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~--~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 754 (1004)
.|++++|...++++.+.... .+...+. .++..+...|++++|...++++.+..|.+..++..++.+
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 163 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC 163 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 44444444444444433210 0222222 235777888888888888888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHcCCCcHH
Q 048751 755 YKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGT-FKVLFTILKKGGFPIE 833 (1004)
Q Consensus 755 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~ 833 (1004)
+...|++++|+..++++.+... .+..++..+...+...|++++|...+++..+. .|+... +..+... .
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~-~------- 232 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQV-K------- 232 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH-H-------
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHH-H-------
Confidence 8888888888888888887542 35777888888888888888888888888654 233222 1111000 0
Q ss_pred HHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCc----hhHHHHHHHHHhcCChHHHHHHHHHH
Q 048751 834 AVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDS----FIYNVAIYAFKSSGKNDKALNTFMKM 909 (1004)
Q Consensus 834 A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m 909 (1004)
........+..+...|++++|++.++++++..+. +. ..+..++.+|...|++++|++.++++
T Consensus 233 -------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 298 (359)
T 3ieg_A 233 -------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEV 298 (359)
T ss_dssp -------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 0000111233455556666666666666665432 22 23555777888888888888888888
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHh
Q 048751 910 LDQGLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPN-ENLFKAVIDAYRN 965 (1004)
Q Consensus 910 ~~~g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 965 (1004)
++ ..| +..++..+..++...|++++|...++++.. +.|+ ..++..+..+...
T Consensus 299 ~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 299 LQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH
T ss_pred HH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHH
Confidence 77 355 577788888888888888888888887763 4565 5566666665544
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=7e-18 Score=185.83 Aligned_cols=296 Identities=14% Similarity=0.050 Sum_probs=144.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcC
Q 048751 470 PGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKS 549 (1004)
Q Consensus 470 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 549 (1004)
..+...+...|++++|...|++++...|.++.++..++.++...|++++|...|.++.+. .+.+...|..+...+...
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHc
Confidence 334444445555555555555555555555555555555555555555555555555543 333445555555555555
Q ss_pred CChhHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048751 550 KLYDKAFSLFKVMKNLGTWP----DECTYNSL------------VQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVI 613 (1004)
Q Consensus 550 g~~~~A~~l~~~m~~~g~~p----~~~t~~~l------------l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 613 (1004)
|++++|...|+++.+.. | +...+..+ ...+...|++++|...++.+.+.. +.+..++..+.
T Consensus 85 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 161 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRA 161 (359)
T ss_dssp TCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 55555555555555532 2 11222222 344445555555555555554432 23444555555
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH------------H
Q 048751 614 AAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLT------------S 681 (1004)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~------------~ 681 (1004)
..+...|++++|...++++.+.. +.+..++..+...+...|++++|...++...+... .+...+. .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555432 23445555555555555555555555555554321 1222211 1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDT----VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT 757 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (1004)
+...+.+.|++++|...++++.+.... +. ..+..+..++.+.|++++|...++++.+..|.++.+|..++.+|..
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 133344455555555555554443322 11 1122344445555555555555555555545555555555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 048751 758 MGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 758 ~g~~~~A~~~~~~~~~ 773 (1004)
.|++++|+..|+++.+
T Consensus 319 ~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQE 334 (359)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHh
Confidence 5555555555555554
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.6e-17 Score=178.97 Aligned_cols=202 Identities=11% Similarity=-0.024 Sum_probs=153.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 603 KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSL 682 (1004)
Q Consensus 603 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 682 (1004)
+.+...+..++..+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|..+++++.+... .+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHH
Confidence 4455566777777888888888888888887653 34455666677777888888888888888877543 356677777
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH
Q 048751 683 IKAYSKIG-CLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML 761 (1004)
Q Consensus 683 i~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 761 (1004)
...+...| ++++|...++++.+.... +...|..++.++...|++++|...|+++.+..|.+...+..++.+|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 78888888 888888888888775543 5567778888888888888888888888888877777777788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 762 DEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 762 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
++|+..++++.+... .+...+..+...+...|++++|...++++++
T Consensus 176 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 176 KLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 888888888877542 3467777888888888888888888887754
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=1.6e-15 Score=174.51 Aligned_cols=368 Identities=13% Similarity=0.036 Sum_probs=224.8
Q ss_pred CHHHHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCCH
Q 048751 570 DECTYNSLVQMFAG----GDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYAR----LGQLSNAVDLFHEMRRAGVEPNE 641 (1004)
Q Consensus 570 ~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~ 641 (1004)
+...+..+...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|...|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44455555555554 556666666666665543 34455555555655 566666666666665543 44
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 048751 642 VVYGSLINGFAA----TGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSK----IGCLEGAKQVYEKMKEMEGGPDTVA 713 (1004)
Q Consensus 642 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 713 (1004)
..+..|...|.. .+++++|++.|+...+.| +...+..|...|.. .+++++|.+.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 555555555555 556666666666665543 34455555555554 556666666666665542 4555
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 714 SNTMISLYAE----LGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT----MGMLDEAIDAAEEMKLSGLLRDVISYNQ 785 (1004)
Q Consensus 714 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 785 (1004)
+..+...|.. .+++++|.+.|++..+.+ ++.++..++..|.. .+++++|+.+|++..+.| +...+..
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 5566666665 566666666666665543 44555566666654 566666666666665543 3344555
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcC-----CCcHHHHHHHHhHhhccCCchhhhHHHH
Q 048751 786 VMACFAT----NGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKG-----GFPIEAVKQLQSSYQEVKPYASEAIITS 856 (1004)
Q Consensus 786 l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 856 (1004)
+...|.. .+++++|+.+|++..+.| +...+..+...+... ++.++|+.+++++.+...+ .....++.
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~-~a~~~lg~ 336 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA-TAQANLGA 336 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Confidence 5555555 566666666666665432 334444555555554 5666666666666654322 12233344
Q ss_pred HHHH---HhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 857 VYSV---VGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKS----SGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYG 929 (1004)
Q Consensus 857 l~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~ 929 (1004)
++.. .++.++|++.+++..+.+ ++.+++.|+..|.. .++.++|+..|++..+.| ++..+..|..+|.
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~ 410 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYY 410 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 4443 237778888888888774 67888999999988 789999999999998854 5677888888888
Q ss_pred h----cCChhHHHHHHHHHHcCCCC-C-cHHHHHHHHHHHH
Q 048751 930 K----AGLVEGVKRIHSQLKYGKME-P-NENLFKAVIDAYR 964 (1004)
Q Consensus 930 ~----~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~ 964 (1004)
+ .++.++|..++++....+-. | ++.....+..++.
T Consensus 411 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 411 YGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 7 78999999999888654322 2 2334444444433
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=2.4e-15 Score=173.01 Aligned_cols=368 Identities=13% Similarity=0.084 Sum_probs=207.8
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 048751 345 AANVFAEMLKSGVAVDTITFNTMIYTCGS----HGNLSEAEALFCMMEESRISPDTKTYNILLSLYAD----VGNINAAL 416 (1004)
Q Consensus 345 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 416 (1004)
++..+....+.| +...+..+...+.. .+++++|...|++..+.| +...+..|...|.. .++.++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 355555555543 56666666666666 788888888888887764 56677778888877 78888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHh----cCCHHHHHHH
Q 048751 417 RYYWKIREVGLFPDSVTQRAILHILCQ----RNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYIN----EGLLHQAKII 488 (1004)
Q Consensus 417 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 488 (1004)
..|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8888887754 55666666666666 667777777777776654 33444444444444 4455555555
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC
Q 048751 489 FKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTW 568 (1004)
Q Consensus 489 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 568 (1004)
|++.... .++.++..++.+|... ....+++++|+.+|++..+.|
T Consensus 174 ~~~a~~~--~~~~a~~~Lg~~y~~g--------------------------------~g~~~~~~~A~~~~~~a~~~~-- 217 (490)
T 2xm6_A 174 YSKAAEQ--GNVWSCNQLGYMYSRG--------------------------------LGVERNDAISAQWYRKSATSG-- 217 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHT--------------------------------SSSCCCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHC--CCHHHHHHHHHHHhcC--------------------------------CCCCcCHHHHHHHHHHHHHCC--
Confidence 5554432 2344444444444440 000444555555555444432
Q ss_pred CCHHHHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCC
Q 048751 569 PDECTYNSLVQMFAG----GDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYAR----LGQLSNAVDLFHEMRRAGVEPN 640 (1004)
Q Consensus 569 p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~ 640 (1004)
+...+..+...+.. .+++++|..+|+...+.| +...+..+...|.. .++.++|+..|++..+.| +
T Consensus 218 -~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~ 290 (490)
T 2xm6_A 218 -DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---N 290 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---C
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---C
Confidence 33344444444443 445555555555554432 23344444444444 555555555555555432 3
Q ss_pred HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHH
Q 048751 641 EVVYGSLINGFAAT-----GKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIG---CLEGAKQVYEKMKEMEGGPDTV 712 (1004)
Q Consensus 641 ~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~ 712 (1004)
...+..+...|... +++++|+..|++..+.| +...+..+...|...| +.++|.+.+++..+.+ +..
T Consensus 291 ~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~ 364 (490)
T 2xm6_A 291 SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKA 364 (490)
T ss_dssp HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHH
Confidence 44444555555554 55666666666555543 3344445555554434 4555666666655542 445
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 048751 713 ASNTMISLYAE----LGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT----MGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 713 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 775 (1004)
.+..+...|.. .+++++|...|++..+.+ ++.++..|..+|.. .+++++|...|++..+.+
T Consensus 365 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 365 AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 55555555555 556666666666665543 45555566666655 566666666666666554
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=3.9e-17 Score=177.52 Aligned_cols=292 Identities=12% Similarity=0.010 Sum_probs=166.5
Q ss_pred CCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHH
Q 048751 465 DEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIK 544 (1004)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 544 (1004)
+...+...+..+...|++++|..++++++...+.+..++..++..+...|++++|...+.++.+. .+.+...|..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHH
Confidence 44445555555555555555555555555554444444444444444445555554444444432 2223333444444
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 048751 545 AYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSN 624 (1004)
Q Consensus 545 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 624 (1004)
.+...|+ ++++|...++.+.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~----------------------------------~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 99 YYLMVGH----------------------------------KNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp HHHHSCS----------------------------------CHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhhh----------------------------------hHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHH
Confidence 4444440 4444444444444332 2234445555556666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048751 625 AVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKE 704 (1004)
Q Consensus 625 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 704 (1004)
|...|+++.+.. +.+...+..+...|...|++++|.+.++.+.+... .+..++..+...+...|++++|...++++.+
T Consensus 144 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 144 AMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 666666655542 22344455566666666666666666666655432 3455666666666666666666666666554
Q ss_pred CC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048751 705 ME--------GGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL 776 (1004)
Q Consensus 705 ~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 776 (1004)
.. ......++..++.++.+.|++++|...++++.+..|.+..++..++.+|...|++++|+..++++.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 31 1223456777777777777777777777777777777777777777777778888888877777776431
Q ss_pred CCCHHHHHHHHHHH-HHcCCH
Q 048751 777 LRDVISYNQVMACF-ATNGQL 796 (1004)
Q Consensus 777 ~p~~~~~~~l~~~~-~~~g~~ 796 (1004)
.+...+..+..++ ...|+.
T Consensus 302 -~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 302 -DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp -CCHHHHHHHHHHHHTTTTC-
T ss_pred -CchHHHHHHHHHHHHHhCch
Confidence 2456666666666 345554
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=9.8e-16 Score=178.23 Aligned_cols=213 Identities=8% Similarity=0.034 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 048751 729 EAESMFNDIREKGQVDAVSFAAMMYLYKT-------MGMLD-------EAIDAAEEMKLSGLLRDVISYNQVMACFATNG 794 (1004)
Q Consensus 729 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 794 (1004)
.|..+|+++....|.++..|..++..+.. .|+++ +|..++++..+.-.+.+...|..++..+.+.|
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 55566666666666666666666666554 46654 66666666654211123556666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHH-HHH-HHHHhhhHhhhhH
Q 048751 795 QLRQCGELLHEMLTQKLLPDN--GTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAII-TSV-YSVVGLNALALGT 870 (1004)
Q Consensus 795 ~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~-~~l-~~~~~~~~~A~~~ 870 (1004)
++++|..+|+++++. .|+. ..+...+..+.+.|+.++|.+.++++++..+........ +.+ +...|+.++|.+.
T Consensus 336 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp CHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 666666666666553 3332 245555555555666666666666666543321111000 000 1123444445555
Q ss_pred HHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 048751 871 CETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQG-LEPD--IVTCINLVGCYGKAGLVEGVKRIHSQL 944 (1004)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~pd--~~t~~~l~~~~~~~g~~~~A~~~~~~~ 944 (1004)
|+++++.. |.++..|..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+......|+.+.+..+.+++
T Consensus 414 ~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 414 FELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555443 2345555555555555555555555555555531 1221 224444444444455555555555444
No 22
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=3.8e-16 Score=179.35 Aligned_cols=336 Identities=11% Similarity=0.008 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHHc--CCHhHHHHHHHHHHHcCCCCCHH
Q 048751 572 CTYNSLVQMFAGGDLMGQAVDLLAEMQGA-----G--FKPQCLTFSSVIAAYARL--GQLSNAVDLFHEMRRAGVEPNEV 642 (1004)
Q Consensus 572 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g--~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~ 642 (1004)
.+|+.+...|...|++++|...+++..+. + ......++..+..++... +++++|+..|++..+.. +-+..
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~ 173 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPE 173 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHH
Confidence 44555555555555555555555544321 0 011233444444444443 34666666666666542 22344
Q ss_pred HHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048751 643 VYGSLING---FAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSK----IGCLEGAKQVYEKMKEMEGGPDTVASN 715 (1004)
Q Consensus 643 ~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 715 (1004)
.+..+..+ +...++.++|++.+++..+... .+..++..+...+.. .|++++|.+.+++.....+. +..++.
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~ 251 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLR 251 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHH
Confidence 44444333 2334555666666666665432 344444444444333 34556677777666654432 555666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCC
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM-------------------GMLDEAIDAAEEMKLSGL 776 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~ 776 (1004)
.+...|...|++++|...++++.+..|.+..++..++.+|... +.+++|+..+++..+...
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 331 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND 331 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC
Confidence 6677777777777777777777777777776666666655432 235566677777666432
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHH-HHHcCCCcHHHHHHHHhHhhccCCchhhhH
Q 048751 777 LRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNG--TFKVLFT-ILKKGGFPIEAVKQLQSSYQEVKPYASEAI 853 (1004)
Q Consensus 777 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 853 (1004)
.+..++..+...+...|++++|...|++.++....+... .+..+.. .....|+.++|+..+++++...+....
T Consensus 332 -~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~--- 407 (472)
T 4g1t_A 332 -NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE--- 407 (472)
T ss_dssp -TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH---
T ss_pred -chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH---
Confidence 234566677777777777777777777776653322211 1122221 234567777777777777766554321
Q ss_pred HHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHH
Q 048751 854 ITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQG-LEPDIVTC 921 (1004)
Q Consensus 854 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~ 921 (1004)
..+....+.+.+++.++.. |.++.+|+.|+.+|...|++++|++.|++.++.| ..|+..+|
T Consensus 408 ------~~~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 408 ------KEKMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp ------HHHHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred ------HHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 2223334455566666665 4577888888888888899999999998888753 33454443
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=2.7e-15 Score=174.57 Aligned_cols=428 Identities=9% Similarity=0.047 Sum_probs=247.8
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048751 349 FAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLF 428 (1004)
Q Consensus 349 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 428 (1004)
|++.++.. +-+...|..++.. .+.|++++|..+|+++.+.. +-+...|..++..+.+.|++++|..+|+++... .
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 45555543 2367788888874 77899999999999999863 336678999999999999999999999999885 4
Q ss_pred CCHHHHHHHHHHH-HHcCCHHHHHH----HHHHHHh-CCCCCCC-CcHHHHHHHHHh---------cCCHHHHHHHHHHh
Q 048751 429 PDSVTQRAILHIL-CQRNMVQEAEA----VIIEMEK-CGLHIDE-HSVPGVMKMYIN---------EGLLHQAKIIFKKC 492 (1004)
Q Consensus 429 p~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~-~g~~~~~-~~~~~l~~~~~~---------~g~~~~A~~~~~~~ 492 (1004)
|+...|...+... ...|+.++|.+ +|+.... .|..|+. ..+...+..... .|+++.|..+|+++
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 7877887777533 34577766655 5665543 3444332 333444443332 45666666666666
Q ss_pred hhcCCCC--HHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH------H
Q 048751 493 QLDGGLS--SKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMK------N 564 (1004)
Q Consensus 493 ~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~------~ 564 (1004)
+.. |.. ...+..........|. ..+. .++. .+.++++.|..++.++. +
T Consensus 157 l~~-P~~~~~~~~~~~~~~e~~~~~-~~~~--------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~l~ 212 (530)
T 2ooe_A 157 CVN-PMINIEQLWRDYNKYEEGINI-HLAK--------------------KMIE--DRSRDYMNARRVAKEYETVMKGLD 212 (530)
T ss_dssp TTS-CCTTHHHHHHHHHHHHHHHCH-HHHH--------------------HHHH--TTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred Hhc-hhhhHHHHHHHHHHHHHhhch-hHHH--------------------HHHH--HhhHHHHHHHHHHHHHHHHHHHhc
Confidence 552 221 1122211111111110 0000 0110 12234555655555421 1
Q ss_pred CC---CCCC--------HHHHHHHHHHHHc----CCCh----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------
Q 048751 565 LG---TWPD--------ECTYNSLVQMFAG----GDLM----GQAVDLLAEMQGAGFKPQCLTFSSVIAAYAR------- 618 (1004)
Q Consensus 565 ~g---~~p~--------~~t~~~ll~~~~~----~~~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~------- 618 (1004)
.. +.|+ ...|...+..... .++. ..+..+|++++.. .+.+...|..++..+.+
T Consensus 213 ~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 213 RNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp SSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhh
Confidence 11 2232 1233333322221 1222 3555666666653 24456666666666654
Q ss_pred cCCHh-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcC
Q 048751 619 LGQLS-------NAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQ-IVLTSLIKAYSKIG 690 (1004)
Q Consensus 619 ~g~~~-------~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g 690 (1004)
.|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+.+.+... .+. ..|..++..+.+.|
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAE 370 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-cCchHHHHHHHHHHHHhc
Confidence 56665 6777777766421233466677777777777777777777777776421 122 46666666666677
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048751 691 CLEGAKQVYEKMKEMEGGPDTVASNTMISL-YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAE 769 (1004)
Q Consensus 691 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 769 (1004)
++++|..+|++..+.... +...+...+.. +...|++++|..+|++..+..|.++..|..++..+.+.|+.++|..+|+
T Consensus 371 ~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 371 GIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 777777777777664322 22222222222 2346777777777777777667677777777777777777777777777
Q ss_pred HHHHCCC-CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 770 EMKLSGL-LRD--VISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 770 ~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+....+. .|+ ...|...+......|+.+.+..++.++.+
T Consensus 450 ~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 450 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7776532 122 33566666666666777777776666654
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=6.2e-17 Score=179.07 Aligned_cols=309 Identities=10% Similarity=-0.027 Sum_probs=147.3
Q ss_pred HhcCCHHHHHH-HHhhhhhhcCCCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh
Q 048751 511 AEKGLWAEAET-VFYGKRDLVGQKK--SVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLM 587 (1004)
Q Consensus 511 ~~~g~~~~A~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 587 (1004)
...|++++|.. .|.+........| +...+..+...+.+.|++++|+..|+++.+... .+..++..+...+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCH
Confidence 34456666665 5555443211111 233455566666666666666666666666543 2455556666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 588 GQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMM 667 (1004)
Q Consensus 588 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 667 (1004)
++|...++.+.+.. +.+..++..+...|...|++++|...++++.... +.+...+..+... ..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~-------- 177 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG-------- 177 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh--------
Confidence 66666666665543 3345556666666666666666666666665532 1111111100000 00
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 048751 668 RECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGP-DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAV 746 (1004)
Q Consensus 668 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 746 (1004)
...+ ...+..+. .+...|++++|...++++.+..+.. +..++..++.+|.+.|++++|...|+++.+..|.+..
T Consensus 178 ---~~~~-~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 252 (368)
T 1fch_A 178 ---GAGL-GPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL 252 (368)
T ss_dssp ------------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ---hhcc-cHHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence 0000 00000111 1224555555555555555433221 3455555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----------CChh
Q 048751 747 SFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLL----------PDNG 816 (1004)
Q Consensus 747 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------p~~~ 816 (1004)
+|..++.++...|++++|+..++++.+... .+..++..+..++...|++++|...++++++.... ....
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 555555555555555555555555555321 23445555555555555555555555555432100 0134
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHhHhh
Q 048751 817 TFKVLFTILKKGGFPIEAVKQLQSSYQ 843 (1004)
Q Consensus 817 ~~~~l~~~~~~~g~~~~A~~~l~~~~~ 843 (1004)
++..+..++...|+.++|...++..++
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 455555555556666655555554443
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=1.1e-16 Score=176.95 Aligned_cols=305 Identities=11% Similarity=-0.030 Sum_probs=132.9
Q ss_pred HHHcCCHHHHHH-HHHHHHhCCC---CCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCH
Q 048751 441 LCQRNMVQEAEA-VIIEMEKCGL---HIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLW 516 (1004)
Q Consensus 441 ~~~~g~~~~A~~-~~~~m~~~g~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 516 (1004)
+...|++++|.+ .+++...... ..+...+..+...+...|++++|...+++++...+.+..++..++.+|...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 334455555555 4443332211 112344555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 048751 517 AEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAE 596 (1004)
Q Consensus 517 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 596 (1004)
++|...|.++.+. .+.+..++..+...+...|++++|+..++++...... +...+..+.. .. .
T Consensus 115 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~-------~~-------~ 177 (368)
T 1fch_A 115 LLAISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEE-------GA-------G 177 (368)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH-------Hh-------h
Confidence 5555555555443 3334444555555555555555555555555443211 0000000000 00 0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048751 597 MQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEP-NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWAN 675 (1004)
Q Consensus 597 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 675 (1004)
.. .+ ...+..+.. +...|++++|...|+++.+..... +..++..+...|...|++++|+..++++.+.
T Consensus 178 ~~----~~-~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----- 246 (368)
T 1fch_A 178 GA----GL-GPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV----- 246 (368)
T ss_dssp -------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hh----cc-cHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 00 00 000011111 124455555555555554432100 2444444444444445555555444444443
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 048751 676 QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLY 755 (1004)
Q Consensus 676 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (1004)
.. .+..++..++.++...|++++|+..|+++.+..|.+..++..++.+|
T Consensus 247 ------------------------------~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 247 ------------------------------RP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295 (368)
T ss_dssp ------------------------------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ------------------------------Cc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 22 13444555555555555555555555555555555555555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 756 KTMGMLDEAIDAAEEMKLSGLLR----------DVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
...|++++|+..++++.+..... ...+|..+..++...|++++|..++.
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 55555555555555554422100 13455555556666666655555554
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=2.2e-17 Score=182.45 Aligned_cols=262 Identities=10% Similarity=0.025 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFA 791 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 791 (1004)
..+..++..+.+.|++++|+.+|+++.+..|.+..+|..++.+|...|++++|+..|+++.+... .+..+|..++.+|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34666677777777777777777777777777777777777777777777777777777776542 33666777777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC-----------hhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCC--chh-hhHHHHH
Q 048751 792 TNGQLRQCGELLHEMLTQKLLPD-----------NGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKP--YAS-EAIITSV 857 (1004)
Q Consensus 792 ~~g~~~~A~~~~~~~~~~~~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~--~~~-~~~~~~l 857 (1004)
..|++++|...++++++. .|+ ...+..+...+...|++++|+..++++++..+. .+. ...++.+
T Consensus 145 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 777777777777777543 121 112233466677788888888888888877665 332 3455667
Q ss_pred HHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhH
Q 048751 858 YSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEG 936 (1004)
Q Consensus 858 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~ 936 (1004)
+...|++++|++.++++++.. |.+..+|+.++.+|...|++++|++.|+++++ ..| +..++..+..++.+.|++++
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHH
Confidence 788888999999999988886 45788999999999999999999999999998 467 48899999999999999999
Q ss_pred HHHHHHHHHcCC---CCC--------cHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 048751 937 VKRIHSQLKYGK---MEP--------NENLFKAVIDAYRNANREDLADLACQEM 979 (1004)
Q Consensus 937 A~~~~~~~~~~~---~~p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 979 (1004)
|...++++.... ..+ +..+|..+..++...|+.+.|.++.++-
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 999998875321 111 2578999999999999999999888763
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=2.8e-17 Score=176.22 Aligned_cols=385 Identities=12% Similarity=0.115 Sum_probs=135.2
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048751 137 KEQTVVLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGK 216 (1004)
Q Consensus 137 ~~~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 216 (1004)
+.+.++|...+++++|.++++... +..+|..++.++.+.|++++|...|.+ .+|..+|..++.++..
T Consensus 7 ~a~~~ll~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~ 73 (449)
T 1b89_A 7 SAVQVLIEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHh
Confidence 445566666777777777776552 123677777777777777777777754 2455677777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhH
Q 048751 217 AGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLST 296 (1004)
Q Consensus 217 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1004)
.|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++.
T Consensus 74 ~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------------------------- 119 (449)
T 1b89_A 74 SGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING-------------------------------- 119 (449)
T ss_dssp -------------------------------------CHHHHTTTTTC--------------------------------
T ss_pred CCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC--------------------------------
Confidence 77777777766655553 44566667777777777777666555421
Q ss_pred HHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC
Q 048751 297 ELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGN 376 (1004)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 376 (1004)
| +..+|+.++..|...|++++|...|..+ ..|..++.++.+.|+
T Consensus 120 --------------------------p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 120 --------------------------P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE 163 (449)
T ss_dssp --------------------------C-----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTC
T ss_pred --------------------------C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhcc
Confidence 1 2346777777777777777777777655 246666677777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 377 LSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIE 456 (1004)
Q Consensus 377 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (1004)
+++|.+.++++ .++.+|..++.+|...|+++.|..+...+. ....-...++..|.+.|.+++|..+++.
T Consensus 164 yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~ 232 (449)
T 1b89_A 164 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEA 232 (449)
T ss_dssp HHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777766666 156666777777777777766644443321 1222233455555555555555555555
Q ss_pred HHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHh--cCCHHHHHHHHhhhhhhcCCC-
Q 048751 457 MEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAE--KGLWAEAETVFYGKRDLVGQK- 533 (1004)
Q Consensus 457 m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~- 533 (1004)
.. ...+.....+..++.+|++ .+++.+..+.|...... ++
T Consensus 233 aL-----------------------------------~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini--~k~ 275 (449)
T 1b89_A 233 AL-----------------------------------GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI--PKV 275 (449)
T ss_dssp HT-----------------------------------TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCH--HHH
T ss_pred Hh-----------------------------------CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcC--cHH
Confidence 44 3333344444444444443 23444444444433221 11
Q ss_pred ----CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 048751 534 ----KSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLG-----------TWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQ 598 (1004)
Q Consensus 534 ----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 598 (1004)
.+...|..+.-.|.+.++++.|....-+-.... -..+...|-..+..|. +....++.-+-..+
T Consensus 276 ~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 276 LRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 123345566666666666665554321110000 0124555555565555 22222222222222
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 599 GAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQ 662 (1004)
Q Consensus 599 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 662 (1004)
... .| .+..+..+.+.|++.-+...+..+... .+...=.++-..|....+++.-..
T Consensus 354 ~~~--ld---~~r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~ 409 (449)
T 1b89_A 354 SPR--LD---HTRAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRT 409 (449)
T ss_dssp GGG--CC---HHHHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred Hhc--cC---cHHHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHH
Confidence 111 11 245566667777777777777666643 234444455556677777654433
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=2.2e-17 Score=177.11 Aligned_cols=379 Identities=13% Similarity=0.143 Sum_probs=186.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHH
Q 048751 181 RAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADR 260 (1004)
Q Consensus 181 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 260 (1004)
+.|++++|..+++++. +..+|+.|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|.+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5577889999888872 2358889999999999999999999653 577788999999999999999988
Q ss_pred HHHHhcccccccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcC
Q 048751 261 FYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAG 340 (1004)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g 340 (1004)
+++...+ . .+++.+.+.|+.+|.+.|
T Consensus 83 yl~~ark-~-----------------------------------------------------~~~~~i~~~Li~~Y~Klg 108 (449)
T 1b89_A 83 YLQMARK-K-----------------------------------------------------ARESYVETELIFALAKTN 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH-h-----------------------------------------------------CccchhHHHHHHHHHHhC
Confidence 7654211 0 112456788889999999
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048751 341 RLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYW 420 (1004)
Q Consensus 341 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 420 (1004)
+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..++.++.+.|++++|.+.++
T Consensus 109 ~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 109 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHH
Confidence 9999888874 367778999999999999999999999876 368889999999999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCH
Q 048751 421 KIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSS 500 (1004)
Q Consensus 421 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 500 (1004)
++ .++.+|..++.+|+..|+++.|..+...+. ..+
T Consensus 173 KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---------------------------------------~~a 207 (449)
T 1b89_A 173 KA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---------------------------------------VHA 207 (449)
T ss_dssp HH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---------------------------------------TCH
T ss_pred Hc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---------------------------------------hCH
Confidence 87 378889999999999888888844332211 122
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcC--CChhHHHHHHHHHHHCCCCC------CHH
Q 048751 501 KTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKS--KLYDKAFSLFKVMKNLGTWP------DEC 572 (1004)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p------~~~ 572 (1004)
.-...++..|.+.|.+++|..+++..... .+.....|+-|.-.|++- ++..+.+++|..- .+++| +..
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~ 283 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHH
Confidence 22345788899999999999999998764 466677788887777765 4555666655422 12222 456
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH
Q 048751 573 TYNSLVQMFAGGDLMGQAVDLLAEMQGA-----------GFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNE 641 (1004)
Q Consensus 573 t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 641 (1004)
.|..+.-.|.+.++++.|....-.-... .-..+...|...+..|.. ....++.-+.......+ |
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~l~~ll~~l~~~l--d- 358 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRL--D- 358 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGGHHHHHHHHGGGC--C-
T ss_pred HHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcc--C-
Confidence 7889999999999999887643221110 014568888888888883 22333433333332222 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYE 700 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 700 (1004)
.+..+..+.+.|.+..+..++..+... -+..+-.++-+.|....+++.-..-.+
T Consensus 359 --~~r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 359 --HTRAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp --HHHHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --cHHHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 244566778888888888888877765 355666677777888888877665554
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=1.6e-16 Score=175.48 Aligned_cols=229 Identities=10% Similarity=-0.025 Sum_probs=138.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-----------H
Q 048751 573 TYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN-----------E 641 (1004)
Q Consensus 573 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~ 641 (1004)
++..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|+..|+++.+.. |+ .
T Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~ 177 (365)
T 4eqf_A 101 AWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSP 177 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccch
Confidence 33333333334444444444444333321 2233444444444444444444444444444321 11 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRECGLW-ANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL 720 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (1004)
..+..+...+...|++++|+++++++.+.... .+..++..+...+...|++++|...++++.+..+. +..+|..++.+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 256 (365)
T 4eqf_A 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGAT 256 (365)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 22334466666777777777777777665432 15667777777777777777777777777765433 56777888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHH
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL-----------RDVISYNQVMAC 789 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------p~~~~~~~l~~~ 789 (1004)
|.+.|++++|+..|+++.+..|.+..++..++.+|...|++++|+..|+++.+.... .+..+|..+..+
T Consensus 257 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 336 (365)
T 4eqf_A 257 LANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA 336 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888887763311 125678888888
Q ss_pred HHHcCCHHHHHHHHHH
Q 048751 790 FATNGQLRQCGELLHE 805 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~ 805 (1004)
+...|+.+.+..+..+
T Consensus 337 ~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 337 LSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHTCHHHHHHHHTT
T ss_pred HHHcCcHHHHHHHHHh
Confidence 8888888887776654
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=4.7e-15 Score=170.19 Aligned_cols=384 Identities=13% Similarity=0.020 Sum_probs=201.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C
Q 048751 360 DTITFNTMIYTCGSHGNLSEAEALFCMMEES-----R--ISP-DTKTYNILLSLYADVGNINAALRYYWKIREV-----G 426 (1004)
Q Consensus 360 ~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~-----g--~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g 426 (1004)
....||.|...+...|++++|++.|++.++. + ..| ...+|+.+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4557888888888889999999988877542 1 122 3467888888888888888888888877642 1
Q ss_pred -CCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCCCCcHHHHHHH---HHhcCCHHHHHHHHHHhhhcCCCC
Q 048751 427 -LFP-DSVTQRAILHILCQR--NMVQEAEAVIIEMEKCGLHIDEHSVPGVMKM---YINEGLLHQAKIIFKKCQLDGGLS 499 (1004)
Q Consensus 427 -~~p-~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~ 499 (1004)
..+ ...++..+..++.+. +++++|++.|++..+.... ++..+..+..+ +...++.++|.+.+++++...+.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 111 234455444444443 3466777777766654321 22233333333 233455566666666666666666
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 048751 500 SKTLAAIIDVYAE----KGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYN 575 (1004)
Q Consensus 500 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 575 (1004)
..++..++..+.. .|++++|...+++.... .+.+...+..+...|...|++++|+..+++..+..+. +..++.
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 6665555544443 34455566666655543 4444555666666666666666666666666554322 334444
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 048751 576 SLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATG 655 (1004)
Q Consensus 576 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 655 (1004)
.+...|...+. ...... ...........+..+.|...+++..... +.+..++..+...|...|
T Consensus 286 ~lg~~y~~~~~---------~~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVF---------QVMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHH---------HHHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH---------HhhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 44433321100 000000 0000001111223556666666666543 333455666777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048751 656 KVEEALQYFRMMRECGLWANQI--VLTSLIK-AYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAES 732 (1004)
Q Consensus 656 ~~~~A~~~~~~m~~~g~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 732 (1004)
++++|++.|++..+....+... .+..+.. .....|++++|+..+++..+.... .... .+....+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~---------~~~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREK---------EKMKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHH---------HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHH---------HHHHHHHHH
Confidence 7777777777776654322211 1222222 223566777777777776664332 2111 112234455
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 733 MFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
++++..+..|.++.+|..++.+|...|++++|++.|++.++.+
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5666666667777777777777777777777777777776643
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=1.7e-15 Score=160.07 Aligned_cols=273 Identities=14% Similarity=0.039 Sum_probs=179.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048751 649 NGFAATGKVEEALQYFRMMRECGLWANQ--IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGM 726 (1004)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 726 (1004)
+-....|++..|+..++...... |+. .....+..+|...|+++.|+..++. ...|+..++..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 33445677777777766554322 322 2445556677777777777765533 123455566666677777777
Q ss_pred HHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 727 VTEAESMFNDIREKG--QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
.++|++.++++.... |.++..+..++.++...|++++|++.+++ ..+...+..++..+.+.|++++|...++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777766553 66666777777777777777777777765 2456666677777777777777777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCch
Q 048751 805 EMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSF 884 (1004)
Q Consensus 805 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~ 884 (1004)
++.+. .|+.. ...+.. .|..++...|++++|+..++++++.. |.++.
T Consensus 155 ~~~~~--~p~~~-~~~l~~-----------------------------a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~ 201 (291)
T 3mkr_A 155 KMQDQ--DEDAT-LTQLAT-----------------------------AWVSLAAGGEKLQDAYYIFQEMADKC-SPTLL 201 (291)
T ss_dssp HHHHH--CTTCH-HHHHHH-----------------------------HHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHH
T ss_pred HHHhh--CcCcH-HHHHHH-----------------------------HHHHHHhCchHHHHHHHHHHHHHHhC-CCcHH
Confidence 77554 23321 111111 12223334477788888888888875 55888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhH-HHHHHHHHHcCCCCCcHHHHHHHHHH
Q 048751 885 IYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEG-VKRIHSQLKYGKMEPNENLFKAVIDA 962 (1004)
Q Consensus 885 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~l~~~ 962 (1004)
+|+.++.++.+.|++++|.+.|+++++ ..| +..++..++.++...|+.++ +.++++++.. +.|+... +.+.
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~--~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~---~~d~ 274 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALD--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF---IKEY 274 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH---HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH---HHHH
Confidence 999999999999999999999999998 567 68899999999999999965 6788887763 4676332 2233
Q ss_pred HHhcCChhHHH
Q 048751 963 YRNANREDLAD 973 (1004)
Q Consensus 963 ~~~~g~~~~A~ 973 (1004)
..+.+.++++.
T Consensus 275 ~~~~~~fd~~~ 285 (291)
T 3mkr_A 275 RAKENDFDRLV 285 (291)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=2.4e-17 Score=190.04 Aligned_cols=150 Identities=11% Similarity=0.146 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLK---SGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNIL 402 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 402 (1004)
..+||+||++||+.|++++|.++|++|.+ .|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||++|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 57999999999999999999999988864 489999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------CCcHHHHHHH
Q 048751 403 LSLYADVGN-INAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHID------EHSVPGVMKM 475 (1004)
Q Consensus 403 i~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~l~~~ 475 (1004)
|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.+..+. ..++.++++ ..+..|+ ..+...+.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 478999999999999999999999999766554 333344444 3344443 3333444455
Q ss_pred HHhcC
Q 048751 476 YINEG 480 (1004)
Q Consensus 476 ~~~~g 480 (1004)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 55433
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=5.4e-15 Score=160.26 Aligned_cols=261 Identities=13% Similarity=-0.018 Sum_probs=126.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048751 539 YNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYAR 618 (1004)
Q Consensus 539 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 618 (1004)
+..+...+...|++++|..+|+++.+.... +..++..+...+...|++++|...++.+.+.. +.+..++..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 334444455555555555555555443321 34444444555555555555555555544432 2344455555555555
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048751 619 LGQLSNAVDLFHEMRRAGVEPNEVVYGSL--------------IN-GFAATGKVEEALQYFRMMRECGLWANQIVLTSLI 683 (1004)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 683 (1004)
.|++++|...++++.+.. +.+...+..+ .. .+...|++++|.++++++.+... .+..++..+.
T Consensus 102 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 555555555555555432 1111111111 11 14444555555555555554432 2444555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHH
Q 048751 684 KAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDE 763 (1004)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 763 (1004)
..+...|++++|...++++.+... .+..++..++..+...|++++|...|+++.+..|.+..++..++.+|...|++++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 555555555555555555544332 2344555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 764 AIDAAEEMKLSGLLR-----------DVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 764 A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
|+..++++.+..... +..+|..+..++...|++++|..+++
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 555555554432111 23444555555555555555555444
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=4.4e-15 Score=160.92 Aligned_cols=280 Identities=10% Similarity=-0.025 Sum_probs=212.0
Q ss_pred CCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHH
Q 048751 465 DEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIK 544 (1004)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 544 (1004)
+...+...+..+...|++++|..+++++....+.+..++..++.++...|++++|...|.++.+. .+.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHH
Confidence 45566778888888888888888888888888888888888888888888888888888887765 4556777777888
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCH
Q 048751 545 AYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIA--AYARLGQL 622 (1004)
Q Consensus 545 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g~~ 622 (1004)
.+...|++++|...++++.+.... +...+..+... .|+......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 888888888888888887765322 11111111000 011111112212 36677888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 623 SNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKM 702 (1004)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 702 (1004)
++|...++++.+.. +.+...+..+...+...|++++|.+.++.+.+... .+..++..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998888764 44678888888999999999999999998887643 46778888999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048751 703 KEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQV------------DAVSFAAMMYLYKTMGMLDEAIDAAEE 770 (1004)
Q Consensus 703 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 770 (1004)
.+... .+..++..+..++.+.|++++|.+.|+++.+..|. +..+|..++.++...|++++|..++++
T Consensus 233 ~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 87654 36778889999999999999999999999888877 688999999999999999999988875
Q ss_pred HH
Q 048751 771 MK 772 (1004)
Q Consensus 771 ~~ 772 (1004)
.+
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 54
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=1e-14 Score=154.02 Aligned_cols=271 Identities=11% Similarity=0.079 Sum_probs=177.3
Q ss_pred HHhcCCHHHHHHHHhhhhhhcCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh
Q 048751 510 YAEKGLWAEAETVFYGKRDLVGQKKS--VVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLM 587 (1004)
Q Consensus 510 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 587 (1004)
....|++..|+..++.... ..|+ ......+..+|...|+++.|+..++. .-.|+..++..+...+...++.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 3445555555555544322 2222 22334456667777777777665543 1234556666677777777777
Q ss_pred HHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048751 588 GQAVDLLAEMQGAGF-KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRM 666 (1004)
Q Consensus 588 ~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 666 (1004)
++|.+.++++...+. +.+...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777766553 33455566666777788888888877766 45677777788888888888888888888
Q ss_pred HHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 048751 667 MRECGLWANQIVL---TSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQV 743 (1004)
Q Consensus 667 m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (1004)
+.+.. |+.... ..++..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|+..|+++.+..|.
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 87754 332211 1122333445788888888888887643 47778888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048751 744 DAVSFAAMMYLYKTMGMLDE-AIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGE 801 (1004)
Q Consensus 744 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 801 (1004)
++.++..++..+...|+.++ +.++++++.+.. |+... +.....+.+.++++..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHH
Confidence 88888888888888888765 567888887744 55332 1223344444444443
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=4.6e-16 Score=179.48 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=112.6
Q ss_pred CcCHHHHHHHHHHHHccCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 048751 358 AVDTITFNTMIYTCGSHGNLSEAEALFCMME---ESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQ 434 (1004)
Q Consensus 358 ~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 434 (1004)
.--..|||+||++||+.|++++|.++|++|. ..|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3446799999999999999999999998876 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcC
Q 048751 435 RAILHILCQRNM-VQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEG 480 (1004)
Q Consensus 435 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 480 (1004)
+++|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++....+.+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 999999999998 5789999999999999999999988876555543
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=1.4e-13 Score=138.66 Aligned_cols=198 Identities=15% Similarity=0.061 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 048751 675 NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL 754 (1004)
Q Consensus 675 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 754 (1004)
+...+..+...+.+.|++++|...+++..+..+. +...+..+..++.+.|++++|+..|+++.+..|.+..++..++.+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3344445555555555555555555555544332 444555555555555555555555555555555555555555555
Q ss_pred HHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048751 755 YKTM-----------GMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFT 823 (1004)
Q Consensus 755 ~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 823 (1004)
+... |++++|+..+++.++..+ .+...|..+..++...|++++|+..|++.++.. .+...+..+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 5555 555555555555555331 124455555555555555555555555554443 33333333333
Q ss_pred HHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHH
Q 048751 824 ILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKAL 903 (1004)
Q Consensus 824 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 903 (1004)
++...|+ +++|++.++++++.. |.+..++..++.++...|++++|+
T Consensus 160 ~~~~~g~---------------------------------~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 160 LYLSMGR---------------------------------LDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHHHHTC---------------------------------HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------
T ss_pred HHHHcCC---------------------------------HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHH
Confidence 3333333 333333333344433 335666777777777777777777
Q ss_pred HHHHHHH
Q 048751 904 NTFMKML 910 (1004)
Q Consensus 904 ~~~~~m~ 910 (1004)
+.|++..
T Consensus 206 ~~~~~~~ 212 (217)
T 2pl2_A 206 RAAALEH 212 (217)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 7777654
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=3.7e-13 Score=139.95 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=110.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC--CCCC----HHHHHHH
Q 048751 539 YNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAG--FKPQ----CLTFSSV 612 (1004)
Q Consensus 539 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~----~~~~~~l 612 (1004)
|..+...+...|++++|+..|+++.+.. .+..++..+...+...|++++|...+..+.+.. ..++ ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4444455555555555555555554443 344445555555555555555555555444321 0011 3445555
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048751 613 IAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCL 692 (1004)
Q Consensus 613 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 692 (1004)
...|...|++++|...|+++... .|+. ..+...|++++|...++.+..... .+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcCH
Confidence 55566666666666666655553 2332 223334455555555555554321 2233444455555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
++|...++++.+.... +..++..++.++...|++++|...|+++.+..|.+..+|..++.++...|++++|+..++++.
T Consensus 156 ~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555555443322 344455555555555555555555555555555555555555555555555555555555554
Q ss_pred H
Q 048751 773 L 773 (1004)
Q Consensus 773 ~ 773 (1004)
+
T Consensus 235 ~ 235 (258)
T 3uq3_A 235 T 235 (258)
T ss_dssp H
T ss_pred H
Confidence 4
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=5.9e-13 Score=138.39 Aligned_cols=223 Identities=11% Similarity=0.083 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC--CCCC----HHHHH
Q 048751 572 CTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAG--VEPN----EVVYG 645 (1004)
Q Consensus 572 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~ 645 (1004)
..+..+...+...|++++|...++.+.+.. .+..++..+..+|...|++++|+..+++..+.. ..++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555666666666666666666666654 555666666666666666666666666655431 0111 35566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048751 646 SLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELG 725 (1004)
Q Consensus 646 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 725 (1004)
.+...+...|++++|++.|+.+.+.. |+. ..+...|++++|...++.+...... +...+..++..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 66666666666666666666666532 332 2344445566666666665553321 3345555666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 726 MVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHE 805 (1004)
Q Consensus 726 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 805 (1004)
++++|...|+++.+..|.+..+|..++.+|...|++++|+..++++.+... .+..+|..+..++...|++++|...+++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666655431 2355555666666666666666666665
Q ss_pred HH
Q 048751 806 ML 807 (1004)
Q Consensus 806 ~~ 807 (1004)
.+
T Consensus 233 a~ 234 (258)
T 3uq3_A 233 AR 234 (258)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=9.2e-14 Score=157.06 Aligned_cols=203 Identities=12% Similarity=0.075 Sum_probs=102.8
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH--
Q 048751 621 QLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKV---EEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGA-- 695 (1004)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-- 695 (1004)
++++|+..|++..+.|. ++ .+..|...|...+.. .++.+.+......|. ......|...|...+.++++
T Consensus 89 ~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHH
Confidence 44555555555554431 11 333444444433322 223333443333332 22344455555555533333
Q ss_pred --HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc----CCHHHHHH
Q 048751 696 --KQVYEKMKEMEGGPDTVASNTMISLYAELG---MVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM----GMLDEAID 766 (1004)
Q Consensus 696 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~ 766 (1004)
..+++.... .++..+..|..+|.+.| +.++|+..|++..+.++++...+..++.+|... +++++|+.
T Consensus 163 ~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 163 DVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp HHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 233332222 12225556666666666 667777777777777766666666666666544 56777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCC-----CcHHHHHHH
Q 048751 767 AAEEMKLSGLLRDVISYNQVMAC-F--ATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGG-----FPIEAVKQL 838 (1004)
Q Consensus 767 ~~~~~~~~~~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~l 838 (1004)
+|++.. . -+...+..|... + ...+++++|+.+|++..+.| +......+...|. .| +.++|+.++
T Consensus 239 ~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 239 LLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 777665 2 334455555554 2 34667777777777766554 3344444444443 22 444444444
Q ss_pred HhH
Q 048751 839 QSS 841 (1004)
Q Consensus 839 ~~~ 841 (1004)
+++
T Consensus 311 ~~A 313 (452)
T 3e4b_A 311 EKA 313 (452)
T ss_dssp HTT
T ss_pred HHH
Confidence 443
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=3.3e-13 Score=135.90 Aligned_cols=208 Identities=15% Similarity=0.041 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048751 604 PQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLI 683 (1004)
Q Consensus 604 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 683 (1004)
++...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..+++..+..+ .+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 344444555555555555555555555554432 22344555555555555555555555555554432 2334444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHH
Q 048751 684 KAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDE 763 (1004)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 763 (1004)
..+...+. . . .. .+...|++++|+..|++..+..|.+..+|..++.+|...|++++
T Consensus 81 ~~~~~~~~------------~-~--~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 81 EAYVALYR------------Q-A--ED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp HHHHHHHH------------T-C--SS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhh------------h-h--hh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHH
Confidence 44444400 0 0 00 00001666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHh
Q 048751 764 AIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQS 840 (1004)
Q Consensus 764 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~ 840 (1004)
|+..|+++++.. .+...+..+..++...|++++|+..|++.++. -+.+...+..+..++...|+.++|+..+++
T Consensus 137 A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 137 AEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ-APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666666666554 45555666666666666666666666666543 122333444555555555555555555443
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=8.4e-13 Score=144.12 Aligned_cols=252 Identities=11% Similarity=0.095 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGM-VTEAESMFNDIREKGQVDAVSFAAMMYLYK 756 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 756 (1004)
.|..+...+...|++++|+..++++++..+. +..+|+.+..++...|+ +++|+..|+++.+..|.+..+|..++.++.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3444444445555555555555555544332 44455555555555554 555555555555555555555555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-CCCcHHHH
Q 048751 757 TMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKK-GGFPIEAV 835 (1004)
Q Consensus 757 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~ 835 (1004)
..|++++|+..|+++++... .+...|..+..++...|++++|+..++++++.. +-+...+..+..++.+ .|..++|+
T Consensus 178 ~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence 55555555555555555331 234455555555555555555555555554431 1123344444444444 33323332
Q ss_pred HHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcC--ChHHHHHHHHHHHHCC
Q 048751 836 KQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSG--KNDKALNTFMKMLDQG 913 (1004)
Q Consensus 836 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g 913 (1004)
.+.+++.++++++.. |.+..+|+.++.+|...| ++++|++.+.++ +
T Consensus 256 ----------------------------~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-- 303 (382)
T 2h6f_A 256 ----------------------------LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-- 303 (382)
T ss_dssp ----------------------------HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--
T ss_pred ----------------------------HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--
Confidence 011245555666654 447788999999999888 689999999887 3
Q ss_pred CCC-CHHHHHHHHHHHHhcC---------ChhHHHHHHHHH-HcCCCCCc-HHHHHHHHHHHHhc
Q 048751 914 LEP-DIVTCINLVGCYGKAG---------LVEGVKRIHSQL-KYGKMEPN-ENLFKAVIDAYRNA 966 (1004)
Q Consensus 914 ~~p-d~~t~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~~~~p~-~~~~~~l~~~~~~~ 966 (1004)
..| +...+..+++++.+.| .+++|.++++++ . .+.|. ...|..++..+...
T Consensus 304 ~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~--~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 304 PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAK--EKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH--HhCchhHHHHHHHHHHHHHH
Confidence 456 5778888998888864 248899999888 5 45676 56777777666543
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=2e-13 Score=143.72 Aligned_cols=118 Identities=12% Similarity=-0.016 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 655 GKVEEALQYFRMMRECGLW---ANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAE 731 (1004)
Q Consensus 655 g~~~~A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 731 (1004)
|++++|+..++.+.+.... .+..++..+...+...|++++|...++++.+..+. +..++..++.+|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 4445555555554443211 12233444444444444444444444444443221 3444444444444444444444
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 732 SMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
..|+++.+..|.+..++..++.+|...|++++|+..++++.+
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=5.4e-13 Score=140.10 Aligned_cols=242 Identities=9% Similarity=-0.006 Sum_probs=118.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHc
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD--VISYNQVMACFATN 793 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~ 793 (1004)
..+..+...|++++|+..|+++.+..|.+..++..++.+|...|++++|+..++++.+....++ ..+|..+...+...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3444455555555555555555555555555555555555555555555555555554221111 22344555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhh-HHHHHHHHHhhhHhhhhHHH
Q 048751 794 GQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEA-IITSVYSVVGLNALALGTCE 872 (1004)
Q Consensus 794 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~-~~~~l~~~~~~~~~A~~~~~ 872 (1004)
|++++|+..+++..+.. +.+...+..+...+...|++++|+..++++++..+...... .++......+++++|++.++
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554321 12233444455555555555555555555544433332211 11212222335555555555
Q ss_pred HHHhhhccCCchhHHHHHHHHHhcCC---hHHHHHHHHHHHHC-CCCCC------HHHHHHHHHHHHhcCChhHHHHHHH
Q 048751 873 TLIKAEAYLDSFIYNVAIYAFKSSGK---NDKALNTFMKMLDQ-GLEPD------IVTCINLVGCYGKAGLVEGVKRIHS 942 (1004)
Q Consensus 873 ~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~-g~~pd------~~t~~~l~~~~~~~g~~~~A~~~~~ 942 (1004)
++++.. |.+..++..++.++...|+ +++|...|+++.+. .-.|+ ..++..+..++.+.|++++|...++
T Consensus 167 ~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 167 KVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555554 2345556666666666666 66666666666542 11132 1355556666666666666666666
Q ss_pred HHHcCCCCCc-HHHHHHHHH
Q 048751 943 QLKYGKMEPN-ENLFKAVID 961 (1004)
Q Consensus 943 ~~~~~~~~p~-~~~~~~l~~ 961 (1004)
++.. +.|+ ...+..+..
T Consensus 246 ~al~--~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 246 NILA--LDPTNKKAIDGLKM 263 (272)
T ss_dssp HHHH--HCTTCHHHHHHHC-
T ss_pred HHHh--cCccHHHHHHHhhh
Confidence 6542 2444 334444433
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=4.2e-13 Score=151.60 Aligned_cols=341 Identities=12% Similarity=0.066 Sum_probs=175.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCH---HHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcC
Q 048751 438 LHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLL---HQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKG 514 (1004)
Q Consensus 438 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 514 (1004)
...+.+.|++++|.++|++..+.| +...+..+...|...|+. ++|..+|++.... ++.+...++.++...|
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCC
Confidence 334445556666666666555543 333444444445555555 5666666655533 4445555555444443
Q ss_pred -----CHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 048751 515 -----LWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLY---DKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDL 586 (1004)
Q Consensus 515 -----~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 586 (1004)
+.++|...|.+..+. ..++ .+..|...|...+.. .++.+.+......|. ...+..+...|...+.
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~--g~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFAN--GEGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGT 156 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHT--TCSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHHHHHC--CCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCC
Confidence 555666666655542 1222 444455555544432 234444444444332 2334445555555453
Q ss_pred hHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----C
Q 048751 587 MGQ----AVDLLAEMQGAGFKPQCLTFSSVIAAYARLG---QLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAAT----G 655 (1004)
Q Consensus 587 ~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g 655 (1004)
+++ +..++..... .+...+..+...|.+.| +.++|+..|++..+.| +++...+..|...|... +
T Consensus 157 ~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 157 YDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 333 3333333322 22226666666777777 7777777777777665 44555555566666544 5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----CH
Q 048751 656 KVEEALQYFRMMRECGLWANQIVLTSLIKA-Y--SKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELG-----MV 727 (1004)
Q Consensus 656 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~ 727 (1004)
++++|+++|+... . -+...+..|... + ...+++++|.+.|++..+.+ +...+..|...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 7777777777766 3 234445555554 3 34677777777777776654 5556666666665 44 77
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 048751 728 TEAESMFNDIREKGQVDAVSFAAMMYLYKT----MGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFAT----NGQLRQC 799 (1004)
Q Consensus 728 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 799 (1004)
++|...|++.. +.++.++..|+.+|.. ..++++|+.+|++..+.|. ......|...|.. ..+..+|
T Consensus 304 ~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 304 KAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 77777777766 5566677777766665 3377777777777776553 2334445444443 3466677
Q ss_pred HHHHHHHHHCC
Q 048751 800 GELLHEMLTQK 810 (1004)
Q Consensus 800 ~~~~~~~~~~~ 810 (1004)
..+|+...+.|
T Consensus 378 ~~~~~~A~~~g 388 (452)
T 3e4b_A 378 YVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHCC
Confidence 77776665544
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=1.5e-12 Score=136.71 Aligned_cols=251 Identities=10% Similarity=0.022 Sum_probs=167.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 048751 643 VYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGP--DTVASNTMISL 720 (1004)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 720 (1004)
.+......+...|++++|+.+|+.+.+... .+...+..+...+...|++++|...++++.+....+ ....|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344556667777788888888877776543 244467777777788888888888888777733222 23347778888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCG 800 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 800 (1004)
+...|++++|+..|+++.+..|.+..+|..++.+|...|++++|+..+++..+... .+...|..+...+...+++++|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888877532 34566666663444556888888
Q ss_pred HHHHHHHHCCCCCC-hhhHHHHHHHHHcCCC---cHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHh
Q 048751 801 ELLHEMLTQKLLPD-NGTFKVLFTILKKGGF---PIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIK 876 (1004)
Q Consensus 801 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~ 876 (1004)
..++++++. .|+ ...+..+..++...|+ .++|...++++++.....
T Consensus 163 ~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------------------- 212 (272)
T 3u4t_A 163 SSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG---------------------------- 212 (272)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG----------------------------
T ss_pred HHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc----------------------------
Confidence 888888654 233 3344444444444444 444444444433321110
Q ss_pred hhccC----CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 048751 877 AEAYL----DSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYG 929 (1004)
Q Consensus 877 ~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~ 929 (1004)
+.+ -..+|..++..|...|++++|++.|+++++ +.| |...+..+.....
T Consensus 213 --~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 213 --GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA--LDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp --GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHC----
T ss_pred --cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCccHHHHHHHhhhhhc
Confidence 110 124688899999999999999999999998 567 4555555544433
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=7.8e-13 Score=139.09 Aligned_cols=245 Identities=11% Similarity=-0.058 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 690 GCLEGAKQVYEKMKEMEGG---PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAID 766 (1004)
Q Consensus 690 g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 766 (1004)
|++++|+..++++.+.... .+..++..++..+...|++++|...|+++.+..|.+..+|..++.+|...|++++|+.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 4455555555555543211 1233444555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccC
Q 048751 767 AAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVK 846 (1004)
Q Consensus 767 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 846 (1004)
.++++.+... .+..++..+...+...|++++|...++++.+. .|+..........+...|+.++|...+++.+...+
T Consensus 99 ~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 99 AFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 5555555321 22445555555555555555555555555432 23322222222333344555555555555554444
Q ss_pred CchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhcc---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 847 PYASEAIITSVYSVVGLNALALGTCETLIKAEAY---LDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCIN 923 (1004)
Q Consensus 847 ~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 923 (1004)
+..........+...+..++|++.++++++..+. .+..+|..++.+|...|++++|...|+++++ ..|+. +..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~--~~~ 251 (275)
T 1xnf_A 176 KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN--FVE 251 (275)
T ss_dssp CCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT--CHH
T ss_pred cchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh--HHH
Confidence 4333223333333444444555555555444321 1245677777788888888888888888776 34532 122
Q ss_pred HHHHHHhcCChhHHHHHH
Q 048751 924 LVGCYGKAGLVEGVKRIH 941 (1004)
Q Consensus 924 l~~~~~~~g~~~~A~~~~ 941 (1004)
...++...|++++|.+.+
T Consensus 252 ~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 244566667777766654
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=9.5e-12 Score=128.80 Aligned_cols=201 Identities=10% Similarity=-0.048 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKA 685 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 685 (1004)
...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.++++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 3456667777777788888888887777653 34567777777788888888888888887776543 356677777778
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 686 YSKIGCLEGAKQVYEKMKEMEGGP-DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEA 764 (1004)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 764 (1004)
+...|++++|.+.++++.+.+..| +...+..++.++...|++++|...|+++.+..|.+..++..++.++...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888877632333 4456777778888888888888888888888777888888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 765 IDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 765 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
+..++++.+... .+...+..+...+...|++++|..+++++.+.
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888876442 44667777777888888888888888887654
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=3.8e-12 Score=138.96 Aligned_cols=181 Identities=11% Similarity=0.096 Sum_probs=77.3
Q ss_pred HHHHHHHHHHcCCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048751 573 TYNSLVQMFAGGDL-MGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGF 651 (1004)
Q Consensus 573 t~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 651 (1004)
.|+.+...+...|+ +++|+..|+++++.. +-+..+|..+..++.+.|++++|+..|+++.+.+ +-+...|..+..++
T Consensus 133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~ 210 (382)
T 2h6f_A 133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVI 210 (382)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHH
Confidence 33333333333342 444444444443322 2233344444444444444444444444444432 22344444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048751 652 AATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSK-IGCLEGA-----KQVYEKMKEMEGGPDTVASNTMISLYAELG 725 (1004)
Q Consensus 652 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 725 (1004)
...|++++|+..|+++++..+ -+...|+.+..++.. .|..++| +..+++.++..+. +...|+.+..++.+.|
T Consensus 211 ~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 211 QEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRG 288 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTC
T ss_pred HHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccC
Confidence 444444444444444444332 233444444444444 2332333 2444444443322 3344444444444444
Q ss_pred --CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048751 726 --MVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 726 --~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
++++|++.+.++ +..|.+..++..++.+|.+.
T Consensus 289 ~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 289 LSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp GGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 345555555444 33444455555555555444
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=4.6e-11 Score=125.37 Aligned_cols=225 Identities=10% Similarity=0.026 Sum_probs=149.9
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048751 605 QCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAA----TGKVEEALQYFRMMRECGLWANQIVLT 680 (1004)
Q Consensus 605 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~ 680 (1004)
+..++..+...|...|++++|+..|++..+ +.+...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 445556666666677777777777776665 2345566666666766 777777777777776654 556666
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 048751 681 SLIKAYSK----IGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE----LGMVTEAESMFNDIREKGQVDAVSFAAMM 752 (1004)
Q Consensus 681 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 752 (1004)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +..++..+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 66666766 777777777777776653 55666667777777 777777777777777654 556666777
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 048751 753 YLYKT----MGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFAT----NGQLRQCGELLHEMLTQKLLPDNGTFKVLFTI 824 (1004)
Q Consensus 753 ~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 824 (1004)
.+|.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|+..+++..+.+. ...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHH
Confidence 77776 777777777777777643 35566667777777 7777777777777766532 4455556666
Q ss_pred HHc----CCCcHHHHHHHHhHhhccC
Q 048751 825 LKK----GGFPIEAVKQLQSSYQEVK 846 (1004)
Q Consensus 825 ~~~----~g~~~~A~~~l~~~~~~~~ 846 (1004)
+.+ .++.++|.++++++.+..+
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 666 6666666666666655443
No 51
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=3.4e-10 Score=131.76 Aligned_cols=451 Identities=11% Similarity=-0.022 Sum_probs=249.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC---HHHHHHHHh
Q 048751 448 QEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGL---WAEAETVFY 524 (1004)
Q Consensus 448 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~ 524 (1004)
.+.+..+++.+.... -|..++..++..+.+.+.++.+..+|++++...|.....|...+..-.+.|. .+.+..+|+
T Consensus 49 ~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp SCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 344445555554433 3666777777777777788888888888888888888888877777777777 888888888
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHcCCCh--------hHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHc---------C
Q 048751 525 GKRDLVGQKKSVVEYNVMIKAYGKSKLY--------DKAFSLFKVMKN-LGT-WPD-ECTYNSLVQMFAG---------G 584 (1004)
Q Consensus 525 ~~~~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~l~~~m~~-~g~-~p~-~~t~~~ll~~~~~---------~ 584 (1004)
+.......+|++..|...+....+.++. +...++|+.... .|. .|+ ...|...+..... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 7766422237777777776655544433 223356665443 344 443 3455555544332 2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048751 585 DLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYF 664 (1004)
Q Consensus 585 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 664 (1004)
++++.+..+|..++......-..+|..... +.+.-+...+.+++.+. ..+++.|...+
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~---------------------~~~y~~Ar~~~ 265 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGEL---------------------SAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH---------------------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHHh---------------------hHHHHHHHHHH
Confidence 235556666666664211111122221111 11100001111111111 11223333333
Q ss_pred HHHHH--CCCC---------------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCCCCHH
Q 048751 665 RMMRE--CGLW---------------A-----N---QIVLTSLIKAYSKIG-------CLEGAKQVYEKMKEMEGGPDTV 712 (1004)
Q Consensus 665 ~~m~~--~g~~---------------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~ 712 (1004)
.++.. .++. | + ...|...+..--..+ ..+.+..+|+++....+ -...
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~ 344 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPE 344 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHH
Confidence 33221 0110 1 0 123444443222211 12334566777666433 3667
Q ss_pred HHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CCC---
Q 048751 713 ASNTMISLYAELGMVTEAE-SMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL---------LRD--- 779 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~p~--- 779 (1004)
.|...+..+...|+.++|. .+|++.....|.+...|...+......|++++|..+|++++.... .|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 7777777777778877885 888888877777777778888888888888888888887775310 131
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCC-CcHHHHHHHHhHhhccCCch
Q 048751 780 ---------VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGG-FPIEAVKQLQSSYQEVKPYA 849 (1004)
Q Consensus 780 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~l~~~~~~~~~~~ 849 (1004)
..+|...+....+.|..+.|..+|.++++.-.......|...+..-.+.| +.+.|.++++..++..+...
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~ 504 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDG 504 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch
Confidence 23566777777777778888888888766411112233333322223333 46777777777777665543
Q ss_pred hh-hHHHHHHHHHhhhHhhhhHHHHHHhhhcc--CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 850 SE-AIITSVYSVVGLNALALGTCETLIKAEAY--LDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINL 924 (1004)
Q Consensus 850 ~~-~~~~~l~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 924 (1004)
.. ..+..+....|+.+.|..+|++++...++ .....|...+..-...|+.+.+.++.+++.+ ..|+......+
T Consensus 505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~~~~~f 580 (679)
T 4e6h_A 505 EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPEVNKLEEF 580 (679)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTTCCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCcHHHHH
Confidence 32 22334455566677777777777666432 1234566666666667777777777777766 34544333333
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=4.1e-11 Score=125.70 Aligned_cols=222 Identities=14% Similarity=0.065 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048751 537 VEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAG----GDLMGQAVDLLAEMQGAGFKPQCLTFSSV 612 (1004)
Q Consensus 537 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 612 (1004)
.++..+...+...|++++|+..|++..+.+ +..++..+...+.. .+++++|...|++..+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 334444444455555555555555544421 33344444444444 555555555555555433 44445555
Q ss_pred HHHHHH----cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 613 IAAYAR----LGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAA----TGKVEEALQYFRMMRECGLWANQIVLTSLIK 684 (1004)
Q Consensus 613 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 684 (1004)
...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 555555 555555555555555542 44555555555555 555566666655555543 3444445555
Q ss_pred HHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048751 685 AYSK----IGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE----LGMVTEAESMFNDIREKGQVDAVSFAAMMYLYK 756 (1004)
Q Consensus 685 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 756 (1004)
.+.. .+++++|...+++..+.+ +...+..+..+|.. .+++++|...|++..+.++ ..++..+..+|.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 5554 555556665555555532 34445555555555 5566666666665555433 445555555555
Q ss_pred h----cCCHHHHHHHHHHHHHCC
Q 048751 757 T----MGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 757 ~----~g~~~~A~~~~~~~~~~~ 775 (1004)
. .+++++|+..+++..+.|
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHHcC
Confidence 5 556666666666655544
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=1.4e-11 Score=124.72 Aligned_cols=202 Identities=10% Similarity=-0.034 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 605 QCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIK 684 (1004)
Q Consensus 605 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 684 (1004)
+...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.++++.+.+... .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 44566677777777888888888887777653 34567777777788888888888888887776543 45667777777
Q ss_pred HHHHc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHH
Q 048751 685 AYSKI-GCLEGAKQVYEKMKEMEGGPD-TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLD 762 (1004)
Q Consensus 685 ~~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 762 (1004)
.+... |++++|...++++.+.+..|+ ...+..++.++...|++++|...++++.+..|.+...+..++.++...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 88888 888888888888777322333 4567777788888888888888888888887778888888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 763 EAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 763 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+|+..++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888888877754213456666777777788888888888777754
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=1e-11 Score=125.88 Aligned_cols=96 Identities=8% Similarity=0.035 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFA 791 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 791 (1004)
..+..++..+...|++++|.+.|+++.+..|.+..++..++.+|...|++++|+..++++.+... .+..++..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555554321 23444555555555
Q ss_pred Hc-CCHHHHHHHHHHHHH
Q 048751 792 TN-GQLRQCGELLHEMLT 808 (1004)
Q Consensus 792 ~~-g~~~~A~~~~~~~~~ 808 (1004)
.. |++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALA 105 (225)
T ss_dssp TTTCCHHHHHHHHHHHHT
T ss_pred HhcCcHHHHHHHHHHHHc
Confidence 55 555555555555544
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=1.3e-11 Score=127.86 Aligned_cols=168 Identities=15% Similarity=0.071 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWA-NQIVLTSLIK 684 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~ 684 (1004)
..++..+...|...|++++|...++++.+.. +.+...+..+...|...|++++|.++++++.+.+..| +...+..+..
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 3444445555555555555555555554432 2244555555555555555555555555555421222 3344555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 685 AYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEA 764 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 764 (1004)
.+...|++++|...++++.+.... +...+..++..+...|++++|...++++.+..|.+...+..++.++...|++++|
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHH
Confidence 556666666666666665554322 4555666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHCC
Q 048751 765 IDAAEEMKLSG 775 (1004)
Q Consensus 765 ~~~~~~~~~~~ 775 (1004)
...++++.+..
T Consensus 229 ~~~~~~~~~~~ 239 (252)
T 2ho1_A 229 ASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHC
Confidence 66666666543
No 56
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=1.1e-09 Score=127.36 Aligned_cols=231 Identities=8% Similarity=-0.012 Sum_probs=160.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 589 QAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAV-DLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMM 667 (1004)
Q Consensus 589 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 667 (1004)
.+..+|++++.. ++-....|...+..+.+.|+.++|. .+|++.... ++.+...|..++....+.|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345567766654 3456677777777777788888886 888888764 3456666777777788888888888888887
Q ss_pred HHCCC---------CCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-
Q 048751 668 RECGL---------WAN------------QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELG- 725 (1004)
Q Consensus 668 ~~~g~---------~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 725 (1004)
.+... .|+ ..+|...+....+.|..+.|..+|..+.+.........|...+..-.+.+
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 65310 121 23577777777778888888888888877512223334433333334444
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 048751 726 MVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR--DVISYNQVMACFATNGQLRQCGELL 803 (1004)
Q Consensus 726 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 803 (1004)
+++.|.++|+...+..|.+...|...+......|+.+.|..+|++.+.....+ ....|...+..-...|+.+.+..+.
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 48888888888888888888888888888888888888888888888765322 2456777777777888888888888
Q ss_pred HHHHHCCCCCChhhHHHHHH
Q 048751 804 HEMLTQKLLPDNGTFKVLFT 823 (1004)
Q Consensus 804 ~~~~~~~~~p~~~~~~~l~~ 823 (1004)
+++.+. .|+......+++
T Consensus 565 ~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 565 KRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp HHHHHH--STTCCHHHHHHH
T ss_pred HHHHHh--CCCCcHHHHHHH
Confidence 888764 455444444443
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=4.6e-12 Score=130.30 Aligned_cols=165 Identities=17% Similarity=0.161 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKA 685 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 685 (1004)
...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.++++++.+... .+...+..+...
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 134 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTV 134 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3344444444444444444444444444332 22344444444444444555555555544444321 233444444444
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048751 686 YSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAI 765 (1004)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 765 (1004)
+...|++++|...++++.+... .+...+..++..+.+.|++++|...|+++.+..|.+..++..++.+|...|++++|+
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence 4445555555555544444322 134444445555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHH
Q 048751 766 DAAEEMKL 773 (1004)
Q Consensus 766 ~~~~~~~~ 773 (1004)
..++++.+
T Consensus 214 ~~~~~~~~ 221 (243)
T 2q7f_A 214 EMLDKAID 221 (243)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 55555554
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=4.8e-12 Score=130.13 Aligned_cols=218 Identities=14% Similarity=0.097 Sum_probs=162.3
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048751 534 KSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVI 613 (1004)
Q Consensus 534 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 613 (1004)
.....|..+...+...|++++|...|+++.+... .+...+..+...+...|++++|...++.+.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 3455677777778888888888888888877543 257777888888888888888888888887753 45677888888
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 048751 614 AAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLE 693 (1004)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 693 (1004)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|+.+++++.+... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 89999999999999999988764 45678888899999999999999999999887643 46778888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048751 694 GAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYK 756 (1004)
Q Consensus 694 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 756 (1004)
+|...++++.+... .+..++..+..+|...|++++|...++++.+..|.+..++..+.....
T Consensus 177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 99999999887654 367788899999999999999999999999999988888876655443
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=2e-12 Score=144.81 Aligned_cols=303 Identities=13% Similarity=0.054 Sum_probs=202.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC
Q 048751 638 EPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWAN----QIVLTSLIKAYSKIGCLEGAKQVYEKMKEM----EGGP 709 (1004)
Q Consensus 638 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~ 709 (1004)
......+......+...|++++|+.+|+++.+.+. .+ ..++..+...+...|++++|...++++... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 34566777788888899999999999998887643 23 246778888888999999999988876543 1111
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CC----HHHHHHHHHHHHhcCC--------------------HH
Q 048751 710 -DTVASNTMISLYAELGMVTEAESMFNDIREKGQ--VD----AVSFAAMMYLYKTMGM--------------------LD 762 (1004)
Q Consensus 710 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~--------------------~~ 762 (1004)
...++..+...|...|++++|...++++.+..+ .+ ..++..++..|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 244677788888889999999999988877642 12 4478888888888888 88
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHcCCCcH
Q 048751 763 EAIDAAEEMKLS----GLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKL-LPD----NGTFKVLFTILKKGGFPI 832 (1004)
Q Consensus 763 ~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~ 832 (1004)
+|+..+++..+. +..+. ..++..+...+...|++++|...+++.++... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888876542 11122 34677788888888888888888888754210 111 113444555555555555
Q ss_pred HHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048751 833 EAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ 912 (1004)
Q Consensus 833 ~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 912 (1004)
+|...++++++..+... .......++..++..|...|++++|...++++.+.
T Consensus 245 ~A~~~~~~al~~~~~~~----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLK----------------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHTT----------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCc----------------------------CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 55555555433211100 00001446778888888888888888888888752
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHc----CCCCCc-HHHHHHHHHHHHhcCCh
Q 048751 913 ----GLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLKY----GKMEPN-ENLFKAVIDAYRNANRE 969 (1004)
Q Consensus 913 ----g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~ 969 (1004)
+-.+ ...++..+..++...|++++|..++++... .+..+. ..++..++.++...|+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 1111 145777888888888888888888876532 222222 45677778888877765
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=4e-12 Score=142.24 Aligned_cols=304 Identities=15% Similarity=0.153 Sum_probs=222.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC
Q 048751 603 KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN----EVVYGSLINGFAATGKVEEALQYFRMMREC----GLWA 674 (1004)
Q Consensus 603 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~ 674 (1004)
......+......+...|++++|...|+++.+.+ +.+ ..++..+...|...|++++|...+++..+. +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4566677888899999999999999999998863 233 357888999999999999999999987543 2111
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCC--------------------HH
Q 048751 675 -NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGG-PD----TVASNTMISLYAELGM--------------------VT 728 (1004)
Q Consensus 675 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~ 728 (1004)
...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2456788889999999999999999988764221 12 3477888999999999 99
Q ss_pred HHHHHHHHHHHcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHH
Q 048751 729 EAESMFNDIREKG------QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL-LRD----VISYNQVMACFATNGQLR 797 (1004)
Q Consensus 729 ~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~ 797 (1004)
+|...+++..+.. +....++..++.+|...|++++|+..+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 9999999876642 22345788999999999999999999999876321 122 347888999999999999
Q ss_pred HHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHH
Q 048751 798 QCGELLHEMLTQKL-LPD----NGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCE 872 (1004)
Q Consensus 798 ~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~ 872 (1004)
+|...+++...... .++ ..++..+...+...|++++|...++++++..+...
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----------------------- 301 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN----------------------- 301 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------------------
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-----------------------
Confidence 99999999864311 011 23445555566666666666666655433211100
Q ss_pred HHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChh
Q 048751 873 TLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ----GLEP-DIVTCINLVGCYGKAGLVE 935 (1004)
Q Consensus 873 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~l~~~~~~~g~~~ 935 (1004)
..+....++..++.+|...|++++|.+.+++.++. |..+ ...++..+..++...|+..
T Consensus 302 -----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 302 -----DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred -----CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 00112457888999999999999999999998752 2223 2457777888888887763
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=3.8e-12 Score=142.85 Aligned_cols=270 Identities=13% Similarity=0.070 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHH
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQ----IVLTSLIKAYSKIGCLEGAKQVYEKMKEM----EG-GPDTV 712 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~ 712 (1004)
..+..+...+...|++++|+.+|+++.+.+. .+. ..+..+...+...|++++|...++++.+. +. .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 4455566677778888888888887777543 232 35667777777778888887777776543 11 11234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKG------QVDAVSFAAMMYLYKTMGM-----------------LDEAIDAAE 769 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~ 769 (1004)
++..+...|...|++++|...++++.+.. +....++..++.+|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 56667777777777777777777766552 2334466677777777777 777777766
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHcCCCcHHHHHHHH
Q 048751 770 EMKLS----GLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKL-LPD----NGTFKVLFTILKKGGFPIEAVKQLQ 839 (1004)
Q Consensus 770 ~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~l~ 839 (1004)
+..+. +..+. ..++..+...+...|++++|...+++.++... .++ ...+..+...+...|++++|+..++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 65431 11111 33556666666666777777666666643210 001 0123333344444444444444443
Q ss_pred hHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhcc-----CCchhHHHHHHHHHhcCChHHHHHHHHHHHHC--
Q 048751 840 SSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAY-----LDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ-- 912 (1004)
Q Consensus 840 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-- 912 (1004)
++ ++.... ....++..++.+|...|++++|...+++.++.
T Consensus 288 ~a---------------------------------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 288 RT---------------------------------LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HH---------------------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HH---------------------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 33 322111 11345666777777777777777777777642
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 913 --GLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 913 --g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
+..+ ...++..+..++.+.|++++|..++++..
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1111 13366667777777777777777776654
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=3.4e-12 Score=143.23 Aligned_cols=277 Identities=15% Similarity=0.109 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCH
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNE----VVYGSLINGFAATGKVEEALQYFRMMREC----GL-WANQ 676 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~ 676 (1004)
...+..+...+...|++++|+..|+++.+.+ +.+. ..|..+...|...|++++|+..+++..+. +. ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 4455667788899999999999999998864 2233 57888999999999999999999988653 11 1234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHH
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEME-----GGPDTVASNTMISLYAELGM-----------------VTEAESMF 734 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~ 734 (1004)
.++..+...|...|++++|...++++.+.. ......++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 578888899999999999999999876541 11234477888999999999 99999999
Q ss_pred HHHHHcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 048751 735 NDIREKG------QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL-RD----VISYNQVMACFATNGQLRQCGELL 803 (1004)
Q Consensus 735 ~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~ 803 (1004)
++..+.. +....++..++.+|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 9876643 223457889999999999999999999998864211 12 237888999999999999999999
Q ss_pred HHHHHCCCC-CC----hhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhh
Q 048751 804 HEMLTQKLL-PD----NGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAE 878 (1004)
Q Consensus 804 ~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~ 878 (1004)
++.+..... .+ ..++..+...+...|+.++|...+++++...+. .- .
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------------------------~~--~ 338 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE--------------------------LG--D 338 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------------HT--C
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------------CC--C
Confidence 998643110 11 234555555666666666666666554332111 00 0
Q ss_pred ccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 879 AYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 879 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
......++..++.+|...|++++|.+.|++.++
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 011244788899999999999999999999987
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=6.3e-11 Score=115.74 Aligned_cols=166 Identities=12% Similarity=0.088 Sum_probs=116.8
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 605 QCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIK 684 (1004)
Q Consensus 605 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 684 (1004)
+..+|..+...|.+.|++++|+..|++..+.. +-+..+|..+..+|.+.|++++|+..+........ .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 45667777777777777777777777776653 33466777777777777777777777777766543 35556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 685 AYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEA 764 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 764 (1004)
.+...++++.|...+.+..+..+. +...+..+..+|.+.|++++|++.|+++.+..|.+..+|..++.+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 677777777777777776665433 5666667777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHH
Q 048751 765 IDAAEEMKL 773 (1004)
Q Consensus 765 ~~~~~~~~~ 773 (1004)
+..|++.++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777776
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=3.9e-11 Score=117.29 Aligned_cols=171 Identities=13% Similarity=0.109 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMAC 789 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 789 (1004)
+..+|..+...|.+.|++++|++.|+++.+..|.++.+|..++.+|...|++++|+..+++...... .+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 5667777888888888888888888888888888888888888888888888888888888777542 345666777777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhh
Q 048751 790 FATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALG 869 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~ 869 (1004)
+...+++++|...+.+..... +.+...+..+..++.+.| ++++|++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g---------------------------------~~~~A~~ 128 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMG---------------------------------EHDKAIE 128 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT---------------------------------CHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhC---------------------------------CchhHHH
Confidence 777888888887777775431 122333333333333333 3444444
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 048751 870 TCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDI 918 (1004)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 918 (1004)
.++++++.. |.+..+|..++.+|...|++++|++.|+++++ +.|+.
T Consensus 129 ~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 129 AYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTHHH
T ss_pred HHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh--CCccC
Confidence 444444443 34667788888888888888888888888877 45643
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=9.7e-12 Score=134.83 Aligned_cols=272 Identities=15% Similarity=0.059 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPD----TVASNTMISLYAELGMVTEAESMFNDIREKG------QVDAVS 747 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~ 747 (1004)
.+......+...|++++|...++++.+.... + ...+..+...+...|++++|...++++.+.. +....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4445566677888888888888887775433 3 3566677778888888888888888765542 223556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHH
Q 048751 748 FAAMMYLYKTMGMLDEAIDAAEEMKLSGL-LRD----VISYNQVMACFATNGQ--------------------LRQCGEL 802 (1004)
Q Consensus 748 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~--------------------~~~A~~~ 802 (1004)
+..++..|...|++++|+..+++..+... .++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77777888888888888888777664211 012 3366677777777777 7777776
Q ss_pred HHHHHHC----CCCC-ChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhh
Q 048751 803 LHEMLTQ----KLLP-DNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKA 877 (1004)
Q Consensus 803 ~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~ 877 (1004)
+++.+.. +..+ ....+.. ++.++...|++++|++.++++++.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~---------------------------------l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGN---------------------------------LGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH---------------------------------HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH---------------------------------HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6665321 0000 0112222 334455566666666666665554
Q ss_pred hcc-----CCchhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcC
Q 048751 878 EAY-----LDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ----GLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLKYG 947 (1004)
Q Consensus 878 ~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~ 947 (1004)
... ....++..++..|...|++++|...+++..+. +..+ ...++..+..++...|++++|...++++...
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 221 11337888899999999999999999988752 1111 1557788888999999999999998876421
Q ss_pred ----CCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 048751 948 ----KMEPN-ENLFKAVIDAYRNANREDLADLACQEMRTAF 983 (1004)
Q Consensus 948 ----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 983 (1004)
+..+. ..++..++.+|...|++++|...+++.....
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 11111 3477889999999999999999999877654
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=1.3e-11 Score=133.87 Aligned_cols=272 Identities=14% Similarity=0.084 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCH
Q 048751 641 EVVYGSLINGFAATGKVEEALQYFRMMRECGLWAN----QIVLTSLIKAYSKIGCLEGAKQVYEKMKEM----EGG-PDT 711 (1004)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~ 711 (1004)
...+......+...|++++|+.+|+++.+... .+ ...+..+...+...|++++|.+.+++..+. +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 34556677888999999999999999988643 23 357888899999999999999999987643 111 124
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQ--VD----AVSFAAMMYLYKTMGM--------------------LDEAI 765 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~--------------------~~~A~ 765 (1004)
.++..+...+...|++++|...+++..+..+ .+ ..++..++..|...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 5778889999999999999999999877642 22 4478899999999999 99999
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHcCCCcHHHH
Q 048751 766 DAAEEMKLS----GLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKL-LPD----NGTFKVLFTILKKGGFPIEAV 835 (1004)
Q Consensus 766 ~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~ 835 (1004)
..+++.... +..+. ..++..+...+...|++++|...+++..+... .++ ..++..+...+..
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-------- 235 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF-------- 235 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--------
Confidence 999887642 21122 45788888999999999999999999864310 011 1133334444444
Q ss_pred HHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccC-----CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048751 836 KQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYL-----DSFIYNVAIYAFKSSGKNDKALNTFMKML 910 (1004)
Q Consensus 836 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 910 (1004)
.|++++|++.+++.++..... ...++..++..|...|++++|...+++++
T Consensus 236 -------------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 236 -------------------------LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp -------------------------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------------------cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 444455555555444432211 14568888999999999999999999887
Q ss_pred HC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 048751 911 DQ----GLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLKY 946 (1004)
Q Consensus 911 ~~----g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~ 946 (1004)
+. +-.+ ...++..+..++.+.|++++|..+++++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 52 1111 144778889999999999999999988753
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=1.4e-11 Score=131.99 Aligned_cols=243 Identities=14% Similarity=0.083 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMREC-------GLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEM------EG- 707 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~- 707 (1004)
.++..+...+...|++++|+.+++++.+. .......++..+...+...|++++|...++++.+. +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33444444444444444444444444331 11112334444555555555555555555554432 11
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 048751 708 GPDTVASNTMISLYAELGMVTEAESMFNDIREKG--------QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS----- 774 (1004)
Q Consensus 708 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 774 (1004)
.....++..+...|...|++++|...++++.+.. +....++..++.++...|++++|+..++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 1123455666667777777777777777666542 234456777777888888888888887777653
Q ss_pred -CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhcc
Q 048751 775 -GLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQ-------KLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEV 845 (1004)
Q Consensus 775 -~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 845 (1004)
+..|+ ..++..+...+...|++++|..+++++++. ...+...........+...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 251 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK---------------- 251 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-----------------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc----------------
Confidence 11233 456777788888888888888888887542 11121111111111111111
Q ss_pred CCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 846 KPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 846 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
..+...+.+.++...+++..... +.+..+|..++.+|...|++++|.+.|++.++
T Consensus 252 ----------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 252 ----------GKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----------------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------CchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11223334444555555555443 33556777788888888888888888887765
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.35 E-value=2.3e-11 Score=138.21 Aligned_cols=212 Identities=11% Similarity=0.003 Sum_probs=139.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048751 691 CLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMV-TEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAE 769 (1004)
Q Consensus 691 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 769 (1004)
.++++...++....... .+...+..+...+...|++ ++|++.|+++.+..|.+..+|..++.+|...|++++|+..|+
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566666665554332 3566666777777777777 777777777777777777777777777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHh
Q 048751 770 EMKLSGLLRDVISYNQVMACFATN---------GQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQS 840 (1004)
Q Consensus 770 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~ 840 (1004)
++++.. |+...+..+...+... |++++|+..+++.++.. +.+...+..+.
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg------------------ 220 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILG------------------ 220 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH------------------
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHH------------------
Confidence 777643 5556666666666666 66666666666665431 11222222222
Q ss_pred HhhccCCchhhhHHHHHHHHH--------hhhHhhhhHHHHHHhhhcc--CCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048751 841 SYQEVKPYASEAIITSVYSVV--------GLNALALGTCETLIKAEAY--LDSFIYNVAIYAFKSSGKNDKALNTFMKML 910 (1004)
Q Consensus 841 ~~~~~~~~~~~~~~~~l~~~~--------~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 910 (1004)
.++... |++++|++.++++++..+. .+..+|..++.+|...|++++|++.|++++
T Consensus 221 ---------------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 221 ---------------NAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp ---------------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233333 6677777777777776531 477788888888888888888888888887
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCChhHHHHHH
Q 048751 911 DQGLEP-DIVTCINLVGCYGKAGLVEGVKRIH 941 (1004)
Q Consensus 911 ~~g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~ 941 (1004)
+ +.| +..++..+..++...|++++|.+.+
T Consensus 286 ~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 286 A--LDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred H--hCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7 456 4567777777777777777776644
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=3.9e-10 Score=120.41 Aligned_cols=213 Identities=9% Similarity=0.042 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 048751 728 TEAESMFNDIREKGQVDAVSFAAMMYLYKT-------MGML-------DEAIDAAEEMKLSGLLRD-VISYNQVMACFAT 792 (1004)
Q Consensus 728 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 792 (1004)
++|..+|+++.+..|.++..|..++..+.. .|++ ++|..+|++.++.- .|+ ...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHh
Confidence 445555555555555555555555554432 3443 55555555555420 132 3455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHH---HHhhhHhh
Q 048751 793 NGQLRQCGELLHEMLTQKLLPDNG--TFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYS---VVGLNALA 867 (1004)
Q Consensus 793 ~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~---~~~~~~~A 867 (1004)
.|++++|..+|+++++ +.|+.. .+..+...+.+.|+.++|...++++++..+.... ..+..... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH-VYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH-HHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHcCCHHHH
Confidence 5555555555555543 223211 3333333333444444444444443333222110 00000011 13455555
Q ss_pred hhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 048751 868 LGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQG-LEP--DIVTCINLVGCYGKAGLVEGVKRIHSQL 944 (1004)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p--d~~t~~~l~~~~~~~g~~~~A~~~~~~~ 944 (1004)
.+.|+++++.. |.+...|..++..+.+.|+.++|..+|+++++.. +.| ....|..++....+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55666555554 3356666666666666677777777777666642 344 2445666666666666666666666665
Q ss_pred H
Q 048751 945 K 945 (1004)
Q Consensus 945 ~ 945 (1004)
.
T Consensus 268 ~ 268 (308)
T 2ond_A 268 F 268 (308)
T ss_dssp H
T ss_pred H
Confidence 4
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.34 E-value=6e-11 Score=131.44 Aligned_cols=300 Identities=12% Similarity=-0.030 Sum_probs=180.3
Q ss_pred HHhcCCHHHHHHHHHHHHHC--CCCCCHH--HHHHHHHH--HHHcCCHHHHH-----------HHHHHHHhCCCCCCH--
Q 048751 651 FAATGKVEEALQYFRMMREC--GLWANQI--VLTSLIKA--YSKIGCLEGAK-----------QVYEKMKEMEGGPDT-- 711 (1004)
Q Consensus 651 ~~~~g~~~~A~~~~~~m~~~--g~~~~~~--~~~~li~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~-- 711 (1004)
+.+.+++++|..+++++.+. ....|.. .|-.++.. ....+.++.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45678888888888777543 1223332 33333322 12233444444 555554432111010
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---
Q 048751 712 --VASNTMISLYAELGMVTEAESMFNDIREKG---QV---DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL-RD--- 779 (1004)
Q Consensus 712 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~--- 779 (1004)
..+...+..+...|++++|...|+++.+.. +. ...++..++.+|...|++++|+..+++..+.... ++
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 011124455666777777777777776542 11 3346677777777777777777777766642100 11
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCh----hhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhh
Q 048751 780 --VISYNQVMACFATNGQLRQCGELLHEMLTQKL-LPDN----GTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEA 852 (1004)
Q Consensus 780 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 852 (1004)
..+++.+...|...|++++|...+++.++... .++. .++..+
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l------------------------------- 230 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI------------------------------- 230 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH-------------------------------
Confidence 23566666667777777777777766643210 0111 122333
Q ss_pred HHHHHHHHHhhhHhhhhHHHHHHhh-----hccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC-HHHHHH
Q 048751 853 IITSVYSVVGLNALALGTCETLIKA-----EAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQG---LEPD-IVTCIN 923 (1004)
Q Consensus 853 ~~~~l~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~~pd-~~t~~~ 923 (1004)
+.++...|++++|++.++++++. ..+....++..++.+|...|++++|.+.+++.++.. -.|. ...+..
T Consensus 231 --g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 308 (383)
T 3ulq_A 231 --GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF 308 (383)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455555666666666665552 213346678999999999999999999999988631 1222 234667
Q ss_pred HHHHHHhcCC---hhHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCC
Q 048751 924 LVGCYGKAGL---VEGVKRIHSQLKYGKMEPN-ENLFKAVIDAYRNANREDLADLACQEMRTAFESP 986 (1004)
Q Consensus 924 l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 986 (1004)
+...+...|+ .++|..+++.. +..|. ...+..++.+|...|++++|...+++........
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 8888889999 67777777665 34444 4578899999999999999999999888655443
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.34 E-value=3.8e-11 Score=136.49 Aligned_cols=211 Identities=12% Similarity=0.027 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048751 588 GQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQL-SNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRM 666 (1004)
Q Consensus 588 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 666 (1004)
+++...++...... +.+...+..+...|...|++ ++|+..|++..+.. +.+...|..+..+|...|++++|++.|++
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444443321 33555566666666666666 66666666665542 23356666666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCHHH
Q 048751 667 MRECGLWANQIVLTSLIKAYSKI---------GCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL--------GMVTE 729 (1004)
Q Consensus 667 m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 729 (1004)
..+.. |+...+..+...+... |++++|...++++.+..+. +...|..+..+|... |++++
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 66543 4455666666666666 6677777777766665433 556666677777666 77777
Q ss_pred HHHHHHHHHHcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 730 AESMFNDIREKGQ---VDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 730 A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
|+..|+++.+..| .+..+|..++.+|...|++++|+..|++..+... .+...+..+..++...|++++|+..+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777776 6777777777777777777777777777776442 235566677777777777777766443
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=4.7e-11 Score=132.31 Aligned_cols=232 Identities=8% Similarity=-0.065 Sum_probs=136.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CCHHHHH
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEG-GP----DTVASNTMISLYAELGMVTEAESMFNDIREKGQ-------VDAVSFA 749 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~ 749 (1004)
....+...|++++|...+++..+.-. .+ ...++..+...|...|++++|...+++..+..+ ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44455666777777777777655311 11 224566677777777777777777777665431 1234667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCChhhHH
Q 048751 750 AMMYLYKTMGMLDEAIDAAEEMKLSGLL-RD----VISYNQVMACFATNGQLRQCGELLHEMLTQ----KL-LPDNGTFK 819 (1004)
Q Consensus 750 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~ 819 (1004)
.++.+|...|++++|+..+++..+.... ++ ..++..+...|...|++++|...+++.++. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777777777777777777776642100 11 236677777777788888887777777541 22 22234455
Q ss_pred HHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCC-
Q 048751 820 VLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGK- 898 (1004)
Q Consensus 820 ~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 898 (1004)
.+...+.+.|++++|...++++++..+.. +.+.....++.+...|...|+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------------~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKA-----------------------------GDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------------------------TCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHc-----------------------------CCHHHHHHHHHHHHHHhCCCcH
Confidence 66666666666666666666544321110 000011224556666777776
Q ss_pred --hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 899 --NDKALNTFMKMLDQGLEPD-IVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 899 --~~~A~~~~~~m~~~g~~pd-~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
.++|+.++++. +..|+ ...+..+...+.+.|++++|..++++..
T Consensus 320 ~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 320 EAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666554 23332 3455667777777777777777776653
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=1.3e-09 Score=116.37 Aligned_cols=219 Identities=11% Similarity=0.002 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------HcCCH-------hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048751 588 GQAVDLLAEMQGAGFKPQCLTFSSVIAAYA-------RLGQL-------SNAVDLFHEMRRAGVEPNEVVYGSLINGFAA 653 (1004)
Q Consensus 588 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 653 (1004)
++|..+|++++... +.+...|..++..+. +.|++ ++|..+|++....-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666532 445556666665554 34665 7888888888763113346678888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHH
Q 048751 654 TGKVEEALQYFRMMRECGLWANQI-VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYA-ELGMVTEAE 731 (1004)
Q Consensus 654 ~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~ 731 (1004)
.|++++|.++|+++.+... .+.. +|..++..+.+.|++++|..+|++..+.... +...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888887432 1233 7888888888888888888888888876542 4444544433322 268899999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 732 SMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG-LLR--DVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
++|+++.+..|.+...|..++..+.+.|++++|..+|++..... +.| ....|..++......|+.++|..+++++++
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99998888888888888888888888899999999999888863 344 356788888888888888888888888865
Q ss_pred C
Q 048751 809 Q 809 (1004)
Q Consensus 809 ~ 809 (1004)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 4
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=2.1e-10 Score=122.68 Aligned_cols=167 Identities=19% Similarity=0.215 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc------CCC
Q 048751 572 CTYNSLVQMFAGGDLMGQAVDLLAEMQGA-------GFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRA------GVE 638 (1004)
Q Consensus 572 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 638 (1004)
.++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...+++.... +-.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455555555555555555555555441 11222334445555555555555555555554432 111
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----
Q 048751 639 P-NEVVYGSLINGFAATGKVEEALQYFRMMREC------GLWA-NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEM----- 705 (1004)
Q Consensus 639 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 705 (1004)
| ...++..+...|...|++++|+.+++++.+. +..| ....+..+...+...|++++|.+.++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 1 1334445555555555555555555554432 1111 1223444444444445555555444444332
Q ss_pred -CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 706 -EGGP-DTVASNTMISLYAELGMVTEAESMFNDIR 738 (1004)
Q Consensus 706 -~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (1004)
+..| ...++..+..+|...|++++|...++++.
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1011 12233444444444444444444444444
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.21 E-value=4.2e-09 Score=116.09 Aligned_cols=160 Identities=15% Similarity=0.021 Sum_probs=74.8
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHH
Q 048751 613 IAAYARLGQLSNAVDLFHEMRRAGVEPNE----VVYGSLINGFAATGKVEEALQYFRMMRECGL-WANQ----IVLTSLI 683 (1004)
Q Consensus 613 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~----~~~~~li 683 (1004)
...+...|++++|...+++.....-..+. .+++.+...+...|++++|...+++...... ..+. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 33445566666666666665553211121 1344455555566666666666655543210 0111 1233444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC----CC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CHHHHHHH
Q 048751 684 KAYSKIGCLEGAKQVYEKMKEME----GG--P-DTVASNTMISLYAELGMVTEAESMFNDIREKGQV-----DAVSFAAM 751 (1004)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l 751 (1004)
..+...|++++|...+++..+.. .. | ....+..+...+...|++++|...+++..+..+. ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 45555555555555555543321 11 1 1123334445555555555555555555443321 12334445
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 048751 752 MYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 752 ~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
+..+...|++++|...+++..
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555544
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.21 E-value=2e-09 Score=118.66 Aligned_cols=272 Identities=13% Similarity=-0.014 Sum_probs=168.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH----HHH
Q 048751 644 YGSLINGFAATGKVEEALQYFRMMRECGLWANQI----VLTSLIKAYSKIGCLEGAKQVYEKMKEMEG-GPDT----VAS 714 (1004)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~ 714 (1004)
.......+...|++++|...+++........+.. ++..+...+...|++++|...+++...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556667888888888888877654323332 455666777788888888888887665321 1122 234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHH
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKG--------QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL--R--DVIS 782 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p--~~~~ 782 (1004)
..+...+...|++++|...+++..+.. +....++..++.++...|++++|...+++..+.... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 566777888888888888888876643 112345667778888888888888888887764321 1 1346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHH
Q 048751 783 YNQVMACFATNGQLRQCGELLHEMLTQKLLPDN-GTFK-----VLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITS 856 (1004)
Q Consensus 783 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~-----~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 856 (1004)
+..+...+...|++++|...+++.....-.++. ..+. .....+...|+.++|...+++.....+...
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~------- 249 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN------- 249 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc-------
Confidence 677777788888888888888887543111111 1111 112234566666666666666544221100
Q ss_pred HHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhc
Q 048751 857 VYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ----GLEPDI-VTCINLVGCYGKA 931 (1004)
Q Consensus 857 l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~pd~-~t~~~l~~~~~~~ 931 (1004)
......+..++.++...|++++|.+.++++.+. |..++. .++..+..++...
T Consensus 250 -----------------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 250 -----------------------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp -----------------------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 000123556677777778888888887777642 222222 2555666777778
Q ss_pred CChhHHHHHHHHHH
Q 048751 932 GLVEGVKRIHSQLK 945 (1004)
Q Consensus 932 g~~~~A~~~~~~~~ 945 (1004)
|+.++|...+++..
T Consensus 307 g~~~~A~~~l~~al 320 (373)
T 1hz4_A 307 GRKSDAQRVLLDAL 320 (373)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88888887776653
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=1.8e-09 Score=119.22 Aligned_cols=199 Identities=8% Similarity=-0.015 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCH
Q 048751 643 VYGSLINGFAATGKVEEALQYFRMMRECG--L---WA-NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEM----EGG-PDT 711 (1004)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~---~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~ 711 (1004)
++..+...|...|+++.|+..+++..+.. . .+ ...++..+...|...|++++|.+.+++..+. +.. ...
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34444445555555555555544443210 0 00 1223444555555555555555555544331 100 012
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CC-HHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIRE-----KGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL---RD-VIS 782 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~-~~~ 782 (1004)
.++..+..+|...|++++|+..|++..+ ..|....++..++.+|.+.|++++|+..+++..+.... +. ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2445555556666666666666665555 33444555566666666666666666666665542111 11 223
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHcCCCcHHHHHHHHhHhhc
Q 048751 783 YNQVMACFATNGQ---LRQCGELLHEMLTQKLLPD-NGTFKVLFTILKKGGFPIEAVKQLQSSYQE 844 (1004)
Q Consensus 783 ~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 844 (1004)
+..+...+...|+ +.+|+.++++. +..|+ ...+..+...+...|+.++|..+++.+++.
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4444444445555 55555555441 22222 223445555666666666666666665554
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.19 E-value=7.3e-10 Score=130.78 Aligned_cols=165 Identities=12% Similarity=0.122 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKA 685 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 685 (1004)
..+|+.+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++.++... -+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3445555555555555555555555554432 22244555555555555555555555555544321 234445555555
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048751 686 YSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAI 765 (1004)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 765 (1004)
+...|++++|++.|++..+.... +..+|+.+..+|.+.|++++|++.|+++.+..|.+..+|..++.+|...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 55555555555555554443322 34444455555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHH
Q 048751 766 DAAEEMKL 773 (1004)
Q Consensus 766 ~~~~~~~~ 773 (1004)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444443
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=4.8e-09 Score=115.72 Aligned_cols=231 Identities=10% Similarity=0.014 Sum_probs=138.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCC-HHHHHH
Q 048751 718 ISLYAELGMVTEAESMFNDIREKG---Q---VDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL-----LRD-VISYNQ 785 (1004)
Q Consensus 718 ~~~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~-~~~~~~ 785 (1004)
+..+...|++++|...|+++.+.. + ....++..++.+|...|++++|+..+++..+... .+. ..+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 334455566666666666555432 1 1233455555556666666666655555543210 011 234455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhh
Q 048751 786 VMACFATNGQLRQCGELLHEMLTQKL-LPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLN 864 (1004)
Q Consensus 786 l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 864 (1004)
+...|...|++++|...+++.++..- .++.... ......++.++...|++
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~-----------------------------~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI-----------------------------AISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH-----------------------------HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH-----------------------------HHHHHHHHHHHHHCCCH
Confidence 55555555555555555555532100 0000000 00112234556667777
Q ss_pred HhhhhHHHHHHh-----hhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC--
Q 048751 865 ALALGTCETLIK-----AEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGL---EPD-IVTCINLVGCYGKAGL-- 933 (1004)
Q Consensus 865 ~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~pd-~~t~~~l~~~~~~~g~-- 933 (1004)
++|++.++++++ .. +....++..++.+|.+.|++++|...+++.++..- .|. ...+..+...+...|+
T Consensus 239 ~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~ 317 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER 317 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 777777777766 33 33467889999999999999999999999987311 232 3456666667777888
Q ss_pred -hhHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048751 934 -VEGVKRIHSQLKYGKMEPN-ENLFKAVIDAYRNANREDLADLACQEMRT 981 (1004)
Q Consensus 934 -~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 981 (1004)
.++|..+++.. +..|+ ...+..++.+|...|++++|...+++...
T Consensus 318 ~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 318 KIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67777776653 33444 45778899999999999999999998764
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=1.9e-09 Score=105.04 Aligned_cols=161 Identities=13% Similarity=0.107 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048751 644 YGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE 723 (1004)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 723 (1004)
|..+...+...|++++|+..++.+.+... .+..++..+...+...|++++|...++++.+... .+...+..++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 33344444444444444444444443221 2334444444444445555555555544444322 234444445555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048751 724 LGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELL 803 (1004)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 803 (1004)
.|++++|.+.++++.+..|.+...+..++.++...|++++|+..++++.+... .+...+..+...+...|++++|...+
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555554331 23444555555555555555555555
Q ss_pred HHHH
Q 048751 804 HEML 807 (1004)
Q Consensus 804 ~~~~ 807 (1004)
+++.
T Consensus 168 ~~~~ 171 (186)
T 3as5_A 168 KKAN 171 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.17 E-value=2.4e-09 Score=104.29 Aligned_cols=165 Identities=19% Similarity=0.128 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 607 LTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAY 686 (1004)
Q Consensus 607 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 686 (1004)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++.+.+... .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 456667777888888888888888876543 34677888888888888999999999888887643 4677888888888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 687 SKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAID 766 (1004)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 766 (1004)
...|++++|.+.++++.+... .+...+..++..+...|++++|...++++.+..|.+..++..++.++...|++++|..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 899999999999998887644 3677888889999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHHC
Q 048751 767 AAEEMKLS 774 (1004)
Q Consensus 767 ~~~~~~~~ 774 (1004)
.++++.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99988764
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.17 E-value=1e-09 Score=129.49 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048751 571 ECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLING 650 (1004)
Q Consensus 571 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 650 (1004)
..+|+.+...+.+.|++++|+..|++.++.. +-+..+|..+..+|.+.|++++|+..|++..+.. +-+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4567777777777777777777777777643 3446677777777777777777777777776653 2346777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048751 651 FAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEA 730 (1004)
Q Consensus 651 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 730 (1004)
|...|++++|++.|++.++... -+...|..+..++.+.|++++|++.|++..+.... +...+..++.+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 7777777777777777776543 35667777777777777777777777777765543 566677777777777777777
Q ss_pred HHHHHHHHHc
Q 048751 731 ESMFNDIREK 740 (1004)
Q Consensus 731 ~~~~~~~~~~ 740 (1004)
.+.++++.+.
T Consensus 165 ~~~~~kal~l 174 (723)
T 4gyw_A 165 DERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777766553
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.16 E-value=4.1e-09 Score=106.88 Aligned_cols=131 Identities=8% Similarity=-0.047 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLY 721 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (1004)
..+......+...|++++|++.|+...+....++...+..+..++...|++++|+..+++..+..+. +..++..+..+|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHH
Confidence 4444444444444444444444444444332234444444444444555555555555544443322 333444455555
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 722 AELGMVTEAESMFNDIREKGQVDA-------VSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
...|++++|+..|++..+..|.+. .+|..++..+...|++++|+..|+++++
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 555555555555555555554444 3345555555555555555555555554
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.13 E-value=5e-09 Score=106.21 Aligned_cols=195 Identities=11% Similarity=0.053 Sum_probs=125.9
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 605 QCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIK 684 (1004)
Q Consensus 605 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 684 (1004)
|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|++.++...+... .+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 44566666666777777777777777766654225666666677777777777777777777776542 24456666777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHH
Q 048751 685 AYSKIGCLEGAKQVYEKMKEMEGGPDT-------VASNTMISLYAELGMVTEAESMFNDIREKGQV--DAVSFAAMMYLY 755 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~ 755 (1004)
.+...|++++|...+++..+..+. +. ..|..+...+...|++++|+..|+++.+..|. +..+|..++.+|
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 777777777777777777665432 33 34666777777888888888888888877777 677787777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 756 KTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
...|+ ..++++...+. .+...|.... ....+.+++|+..+++.++.
T Consensus 164 ~~~~~-----~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YNNGA-----DVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 65543 33444444322 2333343332 23445677788888877653
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.09 E-value=8.2e-10 Score=116.13 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------C
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEM------EG-GPDTVASNTMISLYAELGMVTEAESMFNDIREK--------G 741 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~ 741 (1004)
.++..+...+...|++++|...++++.+. +. .....++..+..+|...|++++|...|+++.+. .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444555555555555555555554432 11 112335566666666667777777776666554 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 742 QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS------GLLRD-VISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 742 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+....++..++.+|...|++++|+..++++.+. +-.|+ ..++..+...+...|++++|..+++++++
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334556777777777777777777777777653 11232 45677777888888888888888887754
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.05 E-value=1.6e-09 Score=113.86 Aligned_cols=157 Identities=18% Similarity=0.194 Sum_probs=77.2
Q ss_pred cCCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc------CCCC-CHHHHHHHH
Q 048751 583 GGDLMGQAVDLLAEMQG-------AGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRA------GVEP-NEVVYGSLI 648 (1004)
Q Consensus 583 ~~~~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li 648 (1004)
..|++++|..++++.++ ...+....++..+...|...|++++|+..++++.+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44555555555555443 111223445556666666666666666666665542 1112 234555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC-----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHH
Q 048751 649 NGFAATGKVEEALQYFRMMRECG-----L--WANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEM------EGGP-DTVAS 714 (1004)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~m~~~g-----~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~ 714 (1004)
..|...|++++|++++++..+.. . +....++..+...+...|++++|...++++.+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 66666666666666666554320 0 112334444555555555555555555554432 0011 12344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 715 NTMISLYAELGMVTEAESMFNDIRE 739 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~ 739 (1004)
..+..+|...|++++|...++++.+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555555555555443
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.04 E-value=6.9e-09 Score=109.62 Aligned_cols=163 Identities=12% Similarity=-0.022 Sum_probs=99.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CC----HHHHHHHHH
Q 048751 685 AYSKIGCLEGAKQVYEKMKEM----EGGPD-TVASNTMISLYAELGMVTEAESMFNDIREKGQ--VD----AVSFAAMMY 753 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~ 753 (1004)
.|...|++++|...+.+..+. +..++ ..+|+.+..+|.+.|++++|+..|++..+..+ .+ ..++..++.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555666666555554432 11111 33566666667777777777777766655432 11 346777788
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh------hHHHH
Q 048751 754 LYKTM-GMLDEAIDAAEEMKLSGLLR-D----VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNG------TFKVL 821 (1004)
Q Consensus 754 ~~~~~-g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l 821 (1004)
+|... |++++|+..|++.++..... + ..++..+...+...|++++|+..|++..+........ .+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 88888888888877532100 1 3467778888888888888888888887653322211 34555
Q ss_pred HHHHHcCCCcHHHHHHHHhHhhccCC
Q 048751 822 FTILKKGGFPIEAVKQLQSSYQEVKP 847 (1004)
Q Consensus 822 ~~~~~~~g~~~~A~~~l~~~~~~~~~ 847 (1004)
..++...|+.++|+..++++++..|.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 66677777777777777776665443
No 88
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.96 E-value=2.4e-07 Score=96.63 Aligned_cols=236 Identities=11% Similarity=0.012 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----Hhc---CCHHH
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLYAELG--MVTEAESMFNDIREKGQVDAVSFAAMMYLY----KTM---GMLDE 763 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~~~ 763 (1004)
++|+.+++.++..++. +..+|+.-..++...| +++++++.++.+...+|.+..+|+.-..++ ... +++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 4566666666554433 4445555555555555 666666666666666666666666655555 444 55666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhH
Q 048751 764 AIDAAEEMKLSGLLRDVISYNQVMACFATNGQLR--QCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSS 841 (1004)
Q Consensus 764 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 841 (1004)
++.+++++.+... .+..+|+.-...+.+.|.++ ++++++.++++... -|...+.....++.+.|..
T Consensus 129 EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~---------- 196 (306)
T 3dra_A 129 EFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHL---------- 196 (306)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGG----------
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccc----------
Confidence 6666666665442 34556665555555666555 66666666654322 1222222222222222210
Q ss_pred hhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHH-HHHHHHHHHHCC-CCC-CH
Q 048751 842 YQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDK-ALNTFMKMLDQG-LEP-DI 918 (1004)
Q Consensus 842 ~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g-~~p-d~ 918 (1004)
.....++++++.+++++... |.|..+|+.+...+.+.|+... +.++.+++.+.+ ..| ++
T Consensus 197 -----------------~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 258 (306)
T 3dra_A 197 -----------------ATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS 258 (306)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH
T ss_pred -----------------chhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH
Confidence 00012445566666666665 3466777777777777776444 334555554422 112 56
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCc-HHHHHHHH
Q 048751 919 VTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPN-ENLFKAVI 960 (1004)
Q Consensus 919 ~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 960 (1004)
..+..++.++.+.|+.++|.++++.+.. .++|- ...|+..+
T Consensus 259 ~al~~la~~~~~~~~~~~A~~~~~~l~~-~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 259 FALETLAKIYTQQKKYNESRTVYDLLKS-KYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh-ccChHHHHHHHHHH
Confidence 6677777777777777777777777643 13443 44554443
No 89
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.95 E-value=2e-07 Score=97.13 Aligned_cols=224 Identities=11% Similarity=0.087 Sum_probs=167.2
Q ss_pred HHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHc-
Q 048751 722 AELGM-VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG--MLDEAIDAAEEMKLSGLLRDVISYNQVMACF----ATN- 793 (1004)
Q Consensus 722 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~- 793 (1004)
.+.|. .++|+.+++.++..+|.+..+|+.-..++...| ++++++..++.++..++ .+..+|+.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhcc
Confidence 34444 578999999999999999999999999999999 99999999999998653 3456676655544 444
Q ss_pred --CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhH--hhhh
Q 048751 794 --GQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNA--LALG 869 (1004)
Q Consensus 794 --g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~--~A~~ 869 (1004)
+++++++.+++++.+.. +-+...+..- +.++...+.++ ++++
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R---------------------------------~~vl~~l~~~~~~~EL~ 167 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYR---------------------------------KWLVDTFDLHNDAKELS 167 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHH---------------------------------HHHHHHTTCTTCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHH---------------------------------HHHHHHhcccChHHHHH
Confidence 56666666666665431 1122222222 23334445555 6777
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHhcCC------hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh-hHHHHHH
Q 048751 870 TCETLIKAEAYLDSFIYNVAIYAFKSSGK------NDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLV-EGVKRIH 941 (1004)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~-~~A~~~~ 941 (1004)
.++++++.+ +.|..+|+.....+...|+ ++++++.+++++. ..| |...|..+...+.+.|+. +.+..++
T Consensus 168 ~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 168 FVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence 888888876 4488899999999988887 9999999999998 567 788999999999998885 5577787
Q ss_pred HHHHcCC-CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 048751 942 SQLKYGK-MEP-NENLFKAVIDAYRNANREDLADLACQEMRTAF 983 (1004)
Q Consensus 942 ~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 983 (1004)
+.+...+ ..| ++..+..++++|.+.|+.++|.++++++..+.
T Consensus 245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~ 288 (306)
T 3dra_A 245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY 288 (306)
T ss_dssp HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc
Confidence 7765322 123 46788899999999999999999999987643
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.93 E-value=4.9e-08 Score=101.17 Aligned_cols=207 Identities=14% Similarity=0.072 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHH
Q 048751 711 TVASNTMISLYAELGMVTEAESMFNDIREKGQVD---AVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL-RD-VISYNQ 785 (1004)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~~~~ 785 (1004)
...+..+...+.+.|++++|+..|+++.+..|.+ ..++..++.+|...|++++|+..|+++++..+. |. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 3444445555555555666666665555555544 555555555566666666666666555553211 11 234445
Q ss_pred HHHHHHH--------cCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHH
Q 048751 786 VMACFAT--------NGQLRQCGELLHEMLTQKLLPDNG-TFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITS 856 (1004)
Q Consensus 786 l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 856 (1004)
+..++.. .|++++|+..|+++++. .|+.. ....+..... ....+. .....++.
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~-------~~~~~~---------~~~~~la~ 156 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRE-------LRAKLA---------RKQYEAAR 156 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHH-------HHHHHH---------HHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHH-------HHHHHH---------HHHHHHHH
Confidence 5555555 56666666666655543 22221 1111100000 000000 00123344
Q ss_pred HHHHHhhhHhhhhHHHHHHhhhccC--CchhHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCCCH----HH
Q 048751 857 VYSVVGLNALALGTCETLIKAEAYL--DSFIYNVAIYAFKSS----------GKNDKALNTFMKMLDQGLEPDI----VT 920 (1004)
Q Consensus 857 l~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~pd~----~t 920 (1004)
++...|++++|+..++++++..+.. ...++..++.+|... |++++|+..|+++++ ..|+. .+
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a 234 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDSPLLRTA 234 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTCTHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCChHHHHH
Confidence 5556666666666666666654321 234566667777655 777888888887776 34542 34
Q ss_pred HHHHHHHHHhcCChhHH
Q 048751 921 CINLVGCYGKAGLVEGV 937 (1004)
Q Consensus 921 ~~~l~~~~~~~g~~~~A 937 (1004)
...+..++.+.|+++++
T Consensus 235 ~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 235 EELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 45555555555555543
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.92 E-value=1.9e-07 Score=96.08 Aligned_cols=183 Identities=9% Similarity=0.008 Sum_probs=97.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 660 ALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEG-GPDTVASNTMISLYAELGMVTEAESMFNDIR 738 (1004)
Q Consensus 660 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (1004)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555566555443 24444555666666666777777777666655443 1244455566666777777777777777766
Q ss_pred HcCCC----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-
Q 048751 739 EKGQV----DAVSFAAMMYL--YKTMG--MLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQ- 809 (1004)
Q Consensus 739 ~~~~~----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 809 (1004)
+..|. +..+...++.+ ....| ++.+|..+|+++.+.. |+..+-..++.++.+.|++++|...++.+.+.
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 65441 12223333333 33333 6777777777765533 44333333333666777777777777655331
Q ss_pred ----C----CCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCC
Q 048751 810 ----K----LLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKP 847 (1004)
Q Consensus 810 ----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 847 (1004)
. -+-+..++..++......|+ +|.+++.+..+..|.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 0 02234444344444444454 455555555544443
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.91 E-value=1.6e-07 Score=96.66 Aligned_cols=78 Identities=8% Similarity=0.048 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 730 AESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR-DVISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 730 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
|+..|+++.+.++++..++..++.++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444443333333333444444444444444444444444333111 23344444444444555555555554443
No 93
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.91 E-value=3.5e-06 Score=95.27 Aligned_cols=125 Identities=9% Similarity=0.039 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELG-MVTEAESMFNDIREKGQVDAVSFAAMMYLY 755 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (1004)
.+|...+....+.++.+.|..+|+.+ .. ...+..+|...+..-...+ +.+.|+.+|+...+..|.++..|...+...
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45777777777788899999999988 32 2234455544343333334 699999999999998887888888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 756 KTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
...|+.+.|..+|+++. .....|...+..=...|+.+.+..++++++.
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999972 3567788888877888999999998888864
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.91 E-value=3e-08 Score=104.62 Aligned_cols=206 Identities=14% Similarity=0.036 Sum_probs=143.3
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 048751 621 QLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMREC----GLWAN-QIVLTSLIKAYSKIGCLEGA 695 (1004)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A 695 (1004)
++++|...|++. ...|...|++++|++.|++..+. |-.++ ..+|..+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 33566778888888888777543 21111 45778888888888888888
Q ss_pred HHHHHHHHhCCCCC-C----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHhcCCHHH
Q 048751 696 KQVYEKMKEMEGGP-D----TVASNTMISLYAEL-GMVTEAESMFNDIREKGQVD------AVSFAAMMYLYKTMGMLDE 763 (1004)
Q Consensus 696 ~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~ 763 (1004)
+..+++..+..... + ..+++.+..+|... |++++|+..|++..+..+.+ ..++..++..|...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 88888776532211 1 34678888999996 99999999999988765432 4578889999999999999
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh------hHHHHHHHHH--cCC
Q 048751 764 AIDAAEEMKLSGLLRDV------ISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNG------TFKVLFTILK--KGG 829 (1004)
Q Consensus 764 A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g 829 (1004)
|+..|++..+....... ..|..+..++...|++++|...+++.++ +.|+.. .+..+..++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999986533221 2577788889999999999999999864 233322 2333444443 345
Q ss_pred CcHHHHHHHHhHhh
Q 048751 830 FPIEAVKQLQSSYQ 843 (1004)
Q Consensus 830 ~~~~A~~~l~~~~~ 843 (1004)
+..+|+..++++..
T Consensus 255 ~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 255 QLSEHCKEFDNFMR 268 (292)
T ss_dssp THHHHHHHHTTSSC
T ss_pred HHHHHHHHhccCCc
Confidence 56666666655544
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.91 E-value=6.1e-08 Score=96.33 Aligned_cols=123 Identities=10% Similarity=0.032 Sum_probs=68.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM- 760 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 760 (1004)
+..++.+.|++++|+..+++..+..+. +...+..+..++...|++++|+..|+++.+..|.+..+|..++.+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 555666666666666666666654433 555666666666666666666666666666666666666666666655443
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 761 -LDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 761 -~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
.+.+...++.... ..|....+.....++...|++++|...|++.+
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2333444444332 11222233334445555566666666666664
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.91 E-value=5.1e-08 Score=101.07 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCC
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQV---DAVSFAAMMYLYKTM----------GMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 775 (1004)
..+...|.+.|++++|+..|+++.+..|. ...++..++.+|... |++++|+..++++.+..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 44566667777777777777777766654 344666666666655 66677777777766643
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.91 E-value=3.8e-08 Score=97.90 Aligned_cols=180 Identities=9% Similarity=-0.002 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQI-VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL 720 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (1004)
..+......+...|++++|+..|+...+.. |+.. .+.. ...... ........+.+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~-----~~~~~~--------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYW-----TNVDKN--------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHH-----HHSCTT--------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHH-----hhhcch--------------hhhhHHHHHHHHHH
Confidence 334444555666777777777777776642 2221 1111 000000 00112233458889
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHH
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQ--LRQ 798 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~ 798 (1004)
|.+.|++++|+..|++..+..|.+..++..++.+|...|++++|+..|+++++..+ .+..+|..+..+|...|+ ...
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998652 347788888888876654 334
Q ss_pred HHHHHHHHHHCCCCCChhh--HHHHHHHHHcCCCcHHHHHHHHhHhhccCC
Q 048751 799 CGELLHEMLTQKLLPDNGT--FKVLFTILKKGGFPIEAVKQLQSSYQEVKP 847 (1004)
Q Consensus 799 A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 847 (1004)
+...++... .|+... +.....++...|+.++|+..++++++..|.
T Consensus 143 ~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 143 LETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 455555442 343322 222333344455566666666666555543
No 98
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.90 E-value=3.5e-06 Score=95.24 Aligned_cols=125 Identities=6% Similarity=0.000 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG-MLDEAIDAAEEMKLSGLLRD-VISYNQVMAC 789 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 789 (1004)
.+|...+..+.+.++.+.|+.+|+++ ...+.....|...+..-...+ +.+.|..+|+...+.. |+ ...|...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 46777777777888899999999999 333345566665555444444 6999999999998854 43 5556677777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhc
Q 048751 790 FATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQE 844 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 844 (1004)
....|+.+.|..+|+++. .....+...+.--...|+.+.+.+.++++...
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 788999999999999872 23445555555555678888888888877753
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=9e-08 Score=87.08 Aligned_cols=125 Identities=23% Similarity=0.246 Sum_probs=51.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048751 647 LINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGM 726 (1004)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 726 (1004)
+...+...|++++|..+++.+.+.+. .+...+..+...+...|++++|...++++..... .+...+..++..+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHhcC
Confidence 33334444444444444444433221 2233333333334444444444444444333221 123333444444444444
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 727 VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
+++|.+.++++.+..|.+...+..++.++...|++++|...++++.+
T Consensus 85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 44444444444444444444444444444444444444444444443
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=8.7e-08 Score=87.20 Aligned_cols=129 Identities=20% Similarity=0.203 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT 757 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (1004)
.+..+...+...|++++|..+++++.+.... +...+..++..+...|++++|...++++....|.+...+..++.++..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4556667777777888888877777665432 566677777777777788888888877777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 758 MGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 758 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
.|++++|+..++++.+... .+...+..++..+...|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7788888777777776542 3456667777777777777777777777654
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.84 E-value=1.9e-08 Score=119.66 Aligned_cols=173 Identities=10% Similarity=0.022 Sum_probs=123.6
Q ss_pred HHcCCHhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048751 617 ARLGQLSNAVDLFHEMR--------RAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSK 688 (1004)
Q Consensus 617 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 688 (1004)
...|++++|++.+++.. +.. +.+...+..+..+|...|++++|++.|+++.+... .+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 56788888888888876 321 33466777777788888888888888887776543 456677777777788
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAA 768 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 768 (1004)
.|++++|...|+++.+..+. +...+..+..+|.+.|++++ ++.|+++.+.+|.+..+|..++.+|...|++++|+..|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888877775543 55667777777888888888 88888888877777778888888888888888888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 048751 769 EEMKLSGLLRD-VISYNQVMACFATNGQ 795 (1004)
Q Consensus 769 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 795 (1004)
+++.+.+ |+ ...+..+..++...|+
T Consensus 558 ~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HhhcccC--cccHHHHHHHHHHHHccCC
Confidence 7777643 55 4566666666655444
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.83 E-value=4.2e-07 Score=91.59 Aligned_cols=58 Identities=10% Similarity=0.058 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 750 AMMYLYKTMGMLDEAIDAAEEMKLSGLLRD----VISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 750 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
.++..|.+.|++++|+..|+++++.. |+ ...+..+..++.+.|++++|.+.++.+...
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 45666777777777777777777643 33 245666777777777777777777776654
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.82 E-value=3e-08 Score=117.91 Aligned_cols=174 Identities=11% Similarity=-0.012 Sum_probs=112.1
Q ss_pred HcCCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048751 582 AGGDLMGQAVDLLAEMQ--------GAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAA 653 (1004)
Q Consensus 582 ~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 653 (1004)
...|++++|.+.+++.. +. .+.+...+..+...|.+.|++++|+..|++..+.+ +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56677777777777766 32 13445566666667777777777777777766543 3346666777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048751 654 TGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESM 733 (1004)
Q Consensus 654 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 733 (1004)
.|++++|++.|++..+... .+...+..+..++.+.|++++ .+.|+++.+.... +...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777766542 345566666777777777777 7777776665443 555666677777777777777777
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 048751 734 FNDIREKGQVDAVSFAAMMYLYKTMGM 760 (1004)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 760 (1004)
|+++.+..|.+..++..++.++...++
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 777776666666677666666655444
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.82 E-value=2.9e-07 Score=92.71 Aligned_cols=207 Identities=10% Similarity=-0.021 Sum_probs=121.3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 048751 605 QCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVE-PN-EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQ--IVLT 680 (1004)
Q Consensus 605 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~ 680 (1004)
+...+..+...+.+.|++++|+..|+++.+.... |. ...+..+..+|.+.|++++|+..|+.+.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445556667777888888888888887764211 11 356677777888888888888888887765432111 1344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 048751 681 SLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM 760 (1004)
Q Consensus 681 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 760 (1004)
.+..++...+.. .+ ..+..+...+...|++++|...|+++.+..|.+..++..+.......
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~-- 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK-- 143 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH--
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH--
Confidence 444444332210 00 01222333444567778888888888877776655543322211100
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHcCCCcHHHHH
Q 048751 761 LDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDN----GTFKVLFTILKKGGFPIEAVK 836 (1004)
Q Consensus 761 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~ 836 (1004)
..+. .....+...+.+.|++++|+..|+++++. .|+. ..+..+..++.+.|+.++|++
T Consensus 144 --------~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 144 --------DRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp --------HHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------HHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 0100 11234566778888888888888888764 3332 356677788888888888888
Q ss_pred HHHhHhhccCCc
Q 048751 837 QLQSSYQEVKPY 848 (1004)
Q Consensus 837 ~l~~~~~~~~~~ 848 (1004)
.++......|..
T Consensus 206 ~~~~l~~~~~~~ 217 (225)
T 2yhc_A 206 VAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHCCSCC
T ss_pred HHHHHHhhCCCc
Confidence 888777665544
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.81 E-value=4.3e-08 Score=94.50 Aligned_cols=159 Identities=11% Similarity=0.045 Sum_probs=98.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHc
Q 048751 646 SLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL-YAEL 724 (1004)
Q Consensus 646 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 724 (1004)
.+...+...|++++|+..|+...+..+ .+...+..+...+...|++++|...++.+.+..+ +...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhh
Confidence 344455556666666666665544322 2445555666666666666666666665544332 33322222211 1122
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR-DVISYNQVMACFATNGQLRQCGELL 803 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 803 (1004)
+...+|+..+++..+..|.+...+..++.++...|++++|+..|+++++..+.+ +...+..+...+...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 233346777888888778888888888888888888888888888887755332 2457777778888888888888877
Q ss_pred HHHH
Q 048751 804 HEML 807 (1004)
Q Consensus 804 ~~~~ 807 (1004)
++.+
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.79 E-value=1.7e-08 Score=94.19 Aligned_cols=81 Identities=15% Similarity=0.041 Sum_probs=33.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML 761 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 761 (1004)
+...|.+.|++++|++.+++.++..+. +..+|..+..+|.+.|++++|+..|+++.+..|.++.+|..++.+|.+.|++
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Confidence 333444444444444444444333222 3334444444444444444444444444444444444444444444444444
Q ss_pred HH
Q 048751 762 DE 763 (1004)
Q Consensus 762 ~~ 763 (1004)
++
T Consensus 116 ~~ 117 (150)
T 4ga2_A 116 DG 117 (150)
T ss_dssp SS
T ss_pred HH
Confidence 33
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.78 E-value=1.5e-07 Score=98.89 Aligned_cols=167 Identities=13% Similarity=0.032 Sum_probs=124.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-H
Q 048751 638 EPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASN-T 716 (1004)
Q Consensus 638 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ 716 (1004)
+.+...+..+...+...|++++|+..|++..+..+ -+...+..+...+...|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 34456667777778888888888888888877643 456677788888888888888888888776644 3433322 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR-DVISYNQVMACFATNGQ 795 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 795 (1004)
....+.+.++.++|...+++..+..|.+...+..++.+|...|++++|+..++++++..... +...+..++..+...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 23346667778888888888888888888888888888888888888888888888865322 25678888888888888
Q ss_pred HHHHHHHHHHHH
Q 048751 796 LRQCGELLHEML 807 (1004)
Q Consensus 796 ~~~A~~~~~~~~ 807 (1004)
.++|...+++.+
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 888888887754
No 108
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.77 E-value=1.2e-06 Score=92.08 Aligned_cols=224 Identities=14% Similarity=0.155 Sum_probs=145.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-CHHHH
Q 048751 723 ELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG-MLDEAIDAAEEMKLSGLLRDVISYNQVMACFATN-G-QLRQC 799 (1004)
Q Consensus 723 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-~~~~A 799 (1004)
+.+..++|+++++++...+|.+..+|+.-..++...| .+++++.+++.++...+ .+..+|+.-...+... + +++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHH
Confidence 3344567777777777777777777777777777777 47777777777777543 3456666666666555 5 66666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhh--------HhhhhHH
Q 048751 800 GELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLN--------ALALGTC 871 (1004)
Q Consensus 800 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~A~~~~ 871 (1004)
++++.++++.. +-+...+..-. .++...+.+ .++++.+
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~---------------------------------wvl~~l~~~~~~~~~~~~eELe~~ 190 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLH---------------------------------WLYSHFSTLGRISEAQWGSELDWC 190 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHH---------------------------------HHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHH---------------------------------HHHHHhccccccchhhHHHHHHHH
Confidence 66666665321 11122221111 112222222 2677888
Q ss_pred HHHHhhhccCCchhHHHHHHHHHhcCC-------hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh---------
Q 048751 872 ETLIKAEAYLDSFIYNVAIYAFKSSGK-------NDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLV--------- 934 (1004)
Q Consensus 872 ~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~--------- 934 (1004)
+++++.+ +.|..+|+.....+.+.|+ ++++++.+++++. ..| |...|..+-+.+.+.|+.
T Consensus 191 ~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~ 267 (349)
T 3q7a_A 191 NEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAIL 267 (349)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHG
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCccccccccc
Confidence 8888876 4488899999999888886 6899999998887 567 688888888888777664
Q ss_pred -----------hHHHHHHHHHHcCC----C-CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcC
Q 048751 935 -----------EGVKRIHSQLKYGK----M-EPNENLFKAVIDAYRNANREDLADLACQEMRTAFE 984 (1004)
Q Consensus 935 -----------~~A~~~~~~~~~~~----~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 984 (1004)
.+...++..+.... . .+.+..+.-|+++|...|+.++|.++++.+..+.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~d 333 (349)
T 3q7a_A 268 PYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYD 333 (349)
T ss_dssp GGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Confidence 33444444333211 1 23456778899999999999999999999876654
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.77 E-value=1.3e-07 Score=100.62 Aligned_cols=196 Identities=9% Similarity=-0.043 Sum_probs=114.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE-LGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDA 767 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 767 (1004)
.|++++|.+++++..+.... .+.+ .+++++|...|.++ +..|...|++++|+..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 46777888888776653221 1222 57788887777765 4577888999999999
Q ss_pred HHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCC--hhhHHHHHHHHHcCCCcHHHHHH
Q 048751 768 AEEMKLS----GLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQK--L-LPD--NGTFKVLFTILKKGGFPIEAVKQ 837 (1004)
Q Consensus 768 ~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~--~~~~~~l~~~~~~~g~~~~A~~~ 837 (1004)
+.+..+. +-.+. ..+|+.+...|...|++++|+..|++.++.- . .+. ..++..+..+|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 8887653 11111 4477888888888899999999888875421 0 111 2344555556656 777777777
Q ss_pred HHhHhhccCCch-------hhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCC-----chhHHHHHHHHHhcCChHHHHHH
Q 048751 838 LQSSYQEVKPYA-------SEAIITSVYSVVGLNALALGTCETLIKAEAYLD-----SFIYNVAIYAFKSSGKNDKALNT 905 (1004)
Q Consensus 838 l~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~ 905 (1004)
++++++..+... ....++.++...|++++|++.++++++..+..+ ..++..++.++...|++++|+..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 766665432210 011234445555555555555555555432211 12344444555555555555555
Q ss_pred HHHHH
Q 048751 906 FMKML 910 (1004)
Q Consensus 906 ~~~m~ 910 (1004)
|++.+
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55554
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.77 E-value=1.4e-07 Score=99.01 Aligned_cols=167 Identities=8% Similarity=-0.011 Sum_probs=137.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-H
Q 048751 603 KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLT-S 681 (1004)
Q Consensus 603 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~ 681 (1004)
+.+...+..+...+.+.|++++|...|++..... +.+...+..+...+...|++++|...++.+.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 4455667778888899999999999999988764 4467888999999999999999999999887754 4544332 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhcC
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVD--AVSFAAMMYLYKTMG 759 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 759 (1004)
....+...++.++|...+++..+..+. +...+..+...+...|++++|+..|+++.+..|.+ ..++..++.++...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 333466778888899999998886654 77888899999999999999999999999998876 889999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 048751 760 MLDEAIDAAEEMKL 773 (1004)
Q Consensus 760 ~~~~A~~~~~~~~~ 773 (1004)
+.++|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999998887654
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.75 E-value=2.5e-08 Score=93.02 Aligned_cols=144 Identities=7% Similarity=-0.036 Sum_probs=110.7
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048751 613 IAAYARLGQLSNAVDLFHEMRRAGVEPN-EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGC 691 (1004)
Q Consensus 613 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 691 (1004)
...+...|++++|+..++..... .|+ ...+..+...|.+.|++++|++.|++.++..+ -+..+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCc
Confidence 34455667888888888777643 232 44566778888888899999998888887653 467788888888899999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 048751 692 LEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESM-FNDIREKGQVDAVSFAAMMYLYKTMGM 760 (1004)
Q Consensus 692 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 760 (1004)
+++|+..|++..+..+. +..++..+..+|.+.|++++|.+. ++++.+..|.++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999988876544 677888888899999998776654 588888889899888888888877764
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.75 E-value=3.8e-07 Score=90.76 Aligned_cols=161 Identities=12% Similarity=0.047 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhCCCCCCHHHHH
Q 048751 640 NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIG----CLEGAKQVYEKMKEMEGGPDTVASN 715 (1004)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~ 715 (1004)
+...+..|...|...+++++|++.|++..+.| +...+..|...|.. + ++++|.+.|++..+.+ +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 33444444444444444444444444444432 23333334433333 3 4444444444444322 333444
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 716 TMISLYAE----LGMVTEAESMFNDIREKGQV--DAVSFAAMMYLYKT----MGMLDEAIDAAEEMKLSGLLRDVISYNQ 785 (1004)
Q Consensus 716 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 785 (1004)
.|...|.. .+++++|..+|++..+.++. ++.++..|..+|.. .+++++|+.+|++..+.+ .+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHH
Confidence 44444443 44455555555555444431 24444555555554 445555555555554431 22334444
Q ss_pred HHHHHHHc-C-----CHHHHHHHHHHHHHC
Q 048751 786 VMACFATN-G-----QLRQCGELLHEMLTQ 809 (1004)
Q Consensus 786 l~~~~~~~-g-----~~~~A~~~~~~~~~~ 809 (1004)
|...|... | ++++|..+|++..+.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 44444332 1 455555555554443
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.73 E-value=7.6e-07 Score=88.57 Aligned_cols=177 Identities=11% Similarity=0.012 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 048751 589 QAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATG----KVEEALQYF 664 (1004)
Q Consensus 589 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~ 664 (1004)
+|.+.|.+..+.| +...+..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|+++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666643 56677777777777888888888888887754 56677777777776 5 788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 048751 665 RMMRECGLWANQIVLTSLIKAYSK----IGCLEGAKQVYEKMKEMEGG-PDTVASNTMISLYAE----LGMVTEAESMFN 735 (1004)
Q Consensus 665 ~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 735 (1004)
++..+.| +...+..|...|.. .+++++|.+.+++..+.+.. .+...+..|..+|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887764 55667777777766 77888888888888776532 126677778888887 778889999998
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCCC
Q 048751 736 DIREKGQVDAVSFAAMMYLYKTM-G-----MLDEAIDAAEEMKLSGL 776 (1004)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 776 (1004)
+..+. +.++.++..|..+|... | ++++|+.+|++..+.|.
T Consensus 154 ~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88877 44556777888887653 3 78899999888888764
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.69 E-value=4.4e-07 Score=106.04 Aligned_cols=154 Identities=8% Similarity=-0.020 Sum_probs=105.4
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048751 619 LGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQV 698 (1004)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 698 (1004)
.|++++|+..|++..+.. +.+...|..+...|...|++++|++.+++..+... .+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467788888888776642 33477788888888888888888888888877643 4567777788888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 048751 699 YEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM---GMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 775 (1004)
+++..+.... +...+..+..+|.+.|++++|.+.|+++.+..|.+..++..++.++... |++++|...+++..+.+
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 8887775543 5667777888888888888888888888888887888888888888888 88888888888887755
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.67 E-value=5.7e-07 Score=86.50 Aligned_cols=163 Identities=9% Similarity=-0.018 Sum_probs=108.0
Q ss_pred CcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHH-
Q 048751 467 HSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKA- 545 (1004)
Q Consensus 467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~- 545 (1004)
..+......+...|++++|...+++++...|.+..++..++.++...|++++|+..|+.+... .|+...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHH
Confidence 345667777888899999999999888888888899999999999999999999999888763 2244333322211
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHhH
Q 048751 546 YGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKP-QCLTFSSVIAAYARLGQLSN 624 (1004)
Q Consensus 546 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~ 624 (1004)
+...+...+|+..+++..+..+. +...+..+...+...|++++|...|+.+++....+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 11222333466667666664322 45666666666777777777777777766643211 24456666666777777777
Q ss_pred HHHHHHHHH
Q 048751 625 AVDLFHEMR 633 (1004)
Q Consensus 625 A~~~~~~m~ 633 (1004)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666554
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.67 E-value=4.7e-07 Score=105.78 Aligned_cols=165 Identities=10% Similarity=0.012 Sum_probs=126.2
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048751 584 GDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQY 663 (1004)
Q Consensus 584 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 663 (1004)
.|++++|...++++.+.. +.+...+..+...|.+.|++++|...|++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988753 4567888999999999999999999999998764 44588899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHc
Q 048751 664 FRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL---GMVTEAESMFNDIREK 740 (1004)
Q Consensus 664 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 740 (1004)
+++..+... .+...+..+...+.+.|++++|.+.+++..+.... +...+..+..++... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999988753 46788999999999999999999999999886543 677888899999999 9999999999999999
Q ss_pred CCCCHHHHHHHH
Q 048751 741 GQVDAVSFAAMM 752 (1004)
Q Consensus 741 ~~~~~~~~~~l~ 752 (1004)
+|.+...+..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 988777766555
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.65 E-value=1e-06 Score=93.53 Aligned_cols=197 Identities=13% Similarity=0.054 Sum_probs=134.2
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 584 GDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYAR-LGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQ 662 (1004)
Q Consensus 584 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 662 (1004)
.|++++|.+++++..+.. +.. +.+ .++++.|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 467778888888776531 111 111 46777777777654 345777888888888
Q ss_pred HHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHHHcCCHHHHHH
Q 048751 663 YFRMMRECGLW-AN----QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEG---GPD--TVASNTMISLYAELGMVTEAES 732 (1004)
Q Consensus 663 ~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~ 732 (1004)
.|.+..+.... .+ ..+|..+...|...|++++|+..+++..+... .+. ..+++.+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 88877542110 01 34677788888888888888888887654311 111 3466777788877 89999999
Q ss_pred HHHHHHHcCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 048751 733 MFNDIREKGQV------DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS----GLLRD-VISYNQVMACFATNGQLRQCGE 801 (1004)
Q Consensus 733 ~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 801 (1004)
.|++..+..+. ...++..++.+|...|++++|+..|++..+. +..+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 98888765432 1457788888888999999999888888763 11111 2356666777777888888888
Q ss_pred HHHHHH
Q 048751 802 LLHEML 807 (1004)
Q Consensus 802 ~~~~~~ 807 (1004)
.|++.+
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 888886
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.62 E-value=2.4e-06 Score=85.04 Aligned_cols=128 Identities=17% Similarity=0.107 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT 757 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (1004)
.+..+...+...|++++|...+++.. .|+..++..+..+|.+.|++++|+..|++..+..|.+..+|..++.+|..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34455666777788888888877663 45677788888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCC--------------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 758 MGMLDEAIDAAEEMKLSGLL--------------RD-VISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 758 ~g~~~~A~~~~~~~~~~~~~--------------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
.|++++|+..++++.+.... |+ ...+..+..++...|++++|...+++.++.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 88888888888888774321 11 267777888888888888888888888754
No 119
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.61 E-value=1.2e-05 Score=84.29 Aligned_cols=257 Identities=9% Similarity=0.059 Sum_probs=168.1
Q ss_pred HHHHHHHH---HHHcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCC
Q 048751 678 VLTSLIKA---YSKIGCLE-GAKQVYEKMKEMEGGPDTVASNTMISLYAELGM----------VTEAESMFNDIREKGQV 743 (1004)
Q Consensus 678 ~~~~li~~---~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~ 743 (1004)
.|..+... ..+.|.++ +|+.+++.+...++. +..+|+.--.++...+. +++++.+++.+...+|.
T Consensus 28 ~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK 106 (331)
T 3dss_A 28 LYQSATQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK 106 (331)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC
Confidence 44444443 34566654 788888888876654 55566655555544443 67888888888888888
Q ss_pred CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCChhhHHH
Q 048751 744 DAVSFAAMMYLYKTMGM--LDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQ-LRQCGELLHEMLTQKLLPDNGTFKV 820 (1004)
Q Consensus 744 ~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ 820 (1004)
+..+|+.-..++...|+ +++++.+++++.+... .|..+|+.-...+...|. ++++++.+.++++... -|...+..
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~ 184 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHY 184 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHH
Confidence 88888888888888884 8888888888888654 567788877777777787 5888888888876532 23333433
Q ss_pred HHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhc----
Q 048751 821 LFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSS---- 896 (1004)
Q Consensus 821 l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 896 (1004)
...++.+.+....+ ++. .-...+.++++++.+++++... |.|..+|+.+-..+.+.
T Consensus 185 R~~ll~~l~~~~~~-----------~~~--------~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 185 RSCLLPQLHPQPDS-----------GPQ--------GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHHSCCC-------------------------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHhhhcccc-----------ccc--------cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcc
Confidence 33333222110000 000 0001245677888888888886 55888998887777766
Q ss_pred -------CChHHHHHHHHHHHHCCCCCC-HHHHHHHHH---HHHhcCChhHHHHHHHHHHcCCCCCc-HHHHHHHHH
Q 048751 897 -------GKNDKALNTFMKMLDQGLEPD-IVTCINLVG---CYGKAGLVEGVKRIHSQLKYGKMEPN-ENLFKAVID 961 (1004)
Q Consensus 897 -------g~~~~A~~~~~~m~~~g~~pd-~~t~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 961 (1004)
+.++++++.++++++ ..|| ..++..++. .....|..+++..++.++. .++|. ..-|..+..
T Consensus 245 ~~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK--AVDPMRAAYLDDLRS 317 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH--HHCGGGHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHH--HhCcchhhHHHHHHH
Confidence 458899999999998 6785 444443332 2224677788888888886 35665 345555543
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.60 E-value=7.2e-06 Score=86.21 Aligned_cols=223 Identities=11% Similarity=0.010 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHH
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLYAELG-MVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM-G-MLDEAIDAAE 769 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~~~~ 769 (1004)
++|+++++.++..++. +..+|+.-..++...| .+++++..++.+...+|.+..+|+.-..++... + ++++++.+++
T Consensus 71 e~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 71 ERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 4555555555554433 4444555555555555 366666666666666666666666665555555 5 5566666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhH
Q 048751 770 EMKLSGLLRDVISYNQVMACFATNGQLR--------QCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSS 841 (1004)
Q Consensus 770 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 841 (1004)
++++... .|..+|+.-...+.+.|.++ ++++++.++++... -|...+.....++.+.+....
T Consensus 150 k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~-------- 219 (349)
T 3q7a_A 150 GSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAET-------- 219 (349)
T ss_dssp HHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCC--------
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccccc--------
Confidence 6655432 34455554444444444333 45555555544321 122222222222222221000
Q ss_pred hhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCCh--------------------HH
Q 048751 842 YQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKN--------------------DK 901 (1004)
Q Consensus 842 ~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~ 901 (1004)
....++++++.+++++... |.|..+|+.+-..+.+.|+. .+
T Consensus 220 ------------------~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (349)
T 3q7a_A 220 ------------------SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIET 280 (349)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC---------
T ss_pred ------------------chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchh
Confidence 0011234455555555544 33555666555555555543 22
Q ss_pred HHHHHHHHHHCC----C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 902 ALNTFMKMLDQG----L-EPDIVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 902 A~~~~~~m~~~g----~-~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
..+....+...+ . .+.+..+..|+++|...|+.++|.++++.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 281 VEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp -----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 222222222211 1 2355666667777777777777777776664
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.60 E-value=9.3e-07 Score=79.29 Aligned_cols=96 Identities=11% Similarity=-0.018 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT 757 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (1004)
.+......+.+.|++++|++.|++.++..+. +..+|..+..+|.+.|++++|+..|++..+.+|.+..+|..++.+|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3444455555555555555555555554332 455555555666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 048751 758 MGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 758 ~g~~~~A~~~~~~~~~~ 774 (1004)
.|++++|+..|++.++.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 66666666666666553
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=1.4e-06 Score=78.16 Aligned_cols=95 Identities=12% Similarity=0.158 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFAT 792 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 792 (1004)
.+...+..|.+.|++++|++.|++..+..|.+..+|..++.+|...|++++|+..+++.++.+. .+...|..+..++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH
Confidence 4555666666677777777777776666666666777777777777777777777766666432 235566666666677
Q ss_pred cCCHHHHHHHHHHHHH
Q 048751 793 NGQLRQCGELLHEMLT 808 (1004)
Q Consensus 793 ~g~~~~A~~~~~~~~~ 808 (1004)
.|++++|+..|++.++
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7777777777766654
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.57 E-value=1.1e-05 Score=84.83 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-H
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKG-------QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS----GLLRD-V 780 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~ 780 (1004)
+++.++.+|...|++++|...|+++.+.. +....++..++.+|.+.|++++|+..+++.++. +..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 34555555555555555555555554211 112235566666666666666666666655431 11122 4
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 048751 781 ISYNQVMACFATNG-QLRQCGELLHEML 807 (1004)
Q Consensus 781 ~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 807 (1004)
.+|..+..++.+.| .+++|...+++..
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 56666667777777 3577777776664
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=6.7e-07 Score=93.45 Aligned_cols=98 Identities=10% Similarity=-0.001 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMAC 789 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 789 (1004)
+...+..++..+.+.|++++|+..|+++.+..|.+...|..++.+|...|++++|+..++++++... .+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3445556666666777777777777777776666777777777777777777777777777666431 235566666667
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 048751 790 FATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~ 808 (1004)
+...|++++|...|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777766643
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.55 E-value=3e-06 Score=84.34 Aligned_cols=127 Identities=10% Similarity=-0.016 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048751 644 YGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE 723 (1004)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 723 (1004)
+..+...+...|++++|+..|++.. .|+...+..+...+...|++++|...+++..+... .+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH
Confidence 4455666777777777777777663 35667777777777788888888888877776543 366677788888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 724 LGMVTEAESMFNDIREKGQVDA----------------VSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
.|++++|...|+++.+..|.+. .++..++.+|...|++++|+..++++.+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888888665544 888999999999999999999999998855
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.54 E-value=2.8e-06 Score=80.46 Aligned_cols=127 Identities=12% Similarity=-0.011 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT 757 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (1004)
.+..+...+...|++++|...+++..+.... +..++..++.++...|++++|...+++..+..|.+..+|..++.++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4555556666667777777777766654332 556666777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHH
Q 048751 758 MGMLDEAIDAAEEMKLSGLLRDVISY--NQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 758 ~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
.|++++|+..++++.+... .+...+ ...+..+...|++++|+..+.+.
T Consensus 94 ~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7777777777777776442 233333 22333356667777777776655
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.54 E-value=8e-06 Score=86.00 Aligned_cols=162 Identities=12% Similarity=-0.016 Sum_probs=104.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQVDAV------SFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL-RD----VISYNQ 785 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~ 785 (1004)
.+..+...|++++|..++++..+..+.+.. .+..++..+...|++++|+..++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356677778888888888887775543322 2334666777777888888888888873222 22 236788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-hhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHH
Q 048751 786 VMACFATNGQLRQCGELLHEMLTQ-----KLLPD-NGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYS 859 (1004)
Q Consensus 786 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~ 859 (1004)
+...|...|++++|+.+++++++. +..+. ..++..+...|.+.|+.++|+.++++
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~------------------- 221 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK------------------- 221 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------------
Confidence 888888888888888888887631 11111 11334444445555555555554444
Q ss_pred HHhhhHhhhhHHHHHHhhhccC-----CchhHHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 048751 860 VVGLNALALGTCETLIKAEAYL-----DSFIYNVAIYAFKSSGK-NDKALNTFMKMLD 911 (1004)
Q Consensus 860 ~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 911 (1004)
+++..... -..+|..++.+|...|+ +++|++.|+++++
T Consensus 222 --------------al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 222 --------------AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp --------------HHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 43332111 14578889999999995 6999999998874
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.53 E-value=1e-05 Score=85.19 Aligned_cols=163 Identities=9% Similarity=-0.037 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--H
Q 048751 643 VYGSLINGFAATGKVEEALQYFRMMRECGLWANQ------IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEG---GPD--T 711 (1004)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~ 711 (1004)
.+...+..+...|++++|.+.++...+.... .. ..+..+...+...|++++|...+++..+... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3344555666677777777777666654321 11 1122344445566677777777766654321 111 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIRE---KGQVD----AVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG----LLRD- 779 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~- 779 (1004)
.+++.++..|...|++++|...|+++.+ ..+.+ ..++..++.+|...|++++|+..+++.++.. ....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3566667777777777777777777662 22322 1466666777777777777777766665421 1011
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHH
Q 048751 780 VISYNQVMACFATNGQLRQC-GELLHEM 806 (1004)
Q Consensus 780 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 806 (1004)
..+|..+..+|...|++++| ...+++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 44566666666666666666 5555554
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=7.4e-07 Score=90.45 Aligned_cols=199 Identities=9% Similarity=-0.040 Sum_probs=126.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------
Q 048751 723 ELGMVTEAESMFNDIREKGQVDAVSFAAM-------MYLYKTMGMLDEAIDAAEEMKLSGLLRD---------------- 779 (1004)
Q Consensus 723 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~p~---------------- 779 (1004)
..++...|++.|.++.+..|.....|..+ ...+...++..+++..+.+..+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57888999999999999988888888888 5777777777777766666554 1121
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhH
Q 048751 780 ------VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAI 853 (1004)
Q Consensus 780 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 853 (1004)
...+..+...+...|++++|.++|..+... .|+......+...+.+.|++++|+..++.......+..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~---- 169 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL---- 169 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH----
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc----
Confidence 123445667788888999998888877543 34443444444556677777777776654432211100
Q ss_pred HHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc
Q 048751 854 ITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD--IVTCINLVGCYGKA 931 (1004)
Q Consensus 854 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~l~~~~~~~ 931 (1004)
...++..++.++...|++++|+..|++.......|. .........++.+.
T Consensus 170 ----------------------------~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l 221 (282)
T 4f3v_A 170 ----------------------------AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ 221 (282)
T ss_dssp ----------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc
Confidence 122566667777777777777777777764322253 33555666667777
Q ss_pred CChhHHHHHHHHHHcCCCCCcHHHHHHH
Q 048751 932 GLVEGVKRIHSQLKYGKMEPNENLFKAV 959 (1004)
Q Consensus 932 g~~~~A~~~~~~~~~~~~~p~~~~~~~l 959 (1004)
|+.++|..+++++.. ..|+..++..|
T Consensus 222 Gr~deA~~~l~~a~a--~~P~~~~~~aL 247 (282)
T 4f3v_A 222 GNESAAVALLEWLQT--THPEPKVAAAL 247 (282)
T ss_dssp TCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--cCCcHHHHHHH
Confidence 777777777777653 34554444444
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.52 E-value=1.5e-06 Score=80.49 Aligned_cols=103 Identities=13% Similarity=0.052 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMAC 789 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 789 (1004)
+...+..+...+.+.|++++|+..|+++....|.++..|..++.+|...|++++|+..|+++.+..+ .++..|..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHH
Confidence 3446677788888889999999999998888888888888888899999999999999888888552 246788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCh
Q 048751 790 FATNGQLRQCGELLHEMLTQKLLPDN 815 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~~~~~p~~ 815 (1004)
|...|++++|...|++.++. .|+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCH
Confidence 88889999998888888764 3554
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.51 E-value=1.9e-06 Score=79.72 Aligned_cols=103 Identities=11% Similarity=-0.021 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 048751 676 QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLY 755 (1004)
Q Consensus 676 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (1004)
...+..+...+.+.|++++|...|+++.+..+. +...|..+..+|...|++++|+..|+++.+..|.++.+|..++.+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 346777778888999999999999998886654 7888889999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048751 756 KTMGMLDEAIDAAEEMKLSGLLRDVI 781 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~~~~p~~~ 781 (1004)
...|++++|+..|++.++.. |+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 99999999999999999854 6644
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.50 E-value=6.9e-07 Score=93.37 Aligned_cols=99 Identities=12% Similarity=-0.085 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 048751 675 NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL 754 (1004)
Q Consensus 675 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 754 (1004)
+...+..+...+...|++++|...++++.+.... +...|..+..+|.+.|++++|+..++++.+..|.+..++..++.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4456667777778888888888888887775433 677778888888888888888888888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 048751 755 YKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 755 ~~~~g~~~~A~~~~~~~~~~ 774 (1004)
|...|++++|+..|++..+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888887764
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.50 E-value=4.4e-06 Score=79.07 Aligned_cols=130 Identities=14% Similarity=0.088 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLY 721 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (1004)
..+..+...+...|++++|...|+...+... .+..++..+...+...|++++|...+++..+... .+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 4456667777777888888888887776543 4567777777888888888888888888777543 3667788888888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHH
Q 048751 722 AELGMVTEAESMFNDIREKGQVDAVSFAAMM--YLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
...|++++|...|+++.+..|.+...+..+. ..+...|++++|+..+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8889999999999988888888777774444 447778888888888876643
No 134
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.46 E-value=9.8e-05 Score=77.27 Aligned_cols=251 Identities=10% Similarity=0.084 Sum_probs=167.8
Q ss_pred HHHHHHHHHHH---HhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCC
Q 048751 641 EVVYGSLINGF---AATGKV-EEALQYFRMMRECGLWANQIVLTSLIKAYSKIGC----------LEGAKQVYEKMKEME 706 (1004)
Q Consensus 641 ~~~~~~li~~~---~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~ 706 (1004)
+..|..+...+ .+.|.+ ++|+.++..+...++ -+..+|+.--..+...+. +++++.+++.+....
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 44555554433 345554 589999999998653 345556665555444443 678999999998866
Q ss_pred CCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHH
Q 048751 707 GGPDTVASNTMISLYAELGM--VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM-LDEAIDAAEEMKLSGLLRDVISY 783 (1004)
Q Consensus 707 ~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~ 783 (1004)
++ +..+|+.-..++.+.|. +++++.+++++.+.+|.|..+|+.-..++...|. ++++++.++++++..+ -|...|
T Consensus 105 PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW 182 (331)
T 3dss_A 105 PK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSW 182 (331)
T ss_dssp TT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHH
T ss_pred CC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHH
Confidence 55 78888888888888884 8999999999999999999999999999999998 6999999999999764 567888
Q ss_pred HHHHHHHHHc--------------CCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHcC-CCcHHHHHHHHhHhhccCC
Q 048751 784 NQVMACFATN--------------GQLRQCGELLHEMLTQKLLPD-NGTFKVLFTILKKG-GFPIEAVKQLQSSYQEVKP 847 (1004)
Q Consensus 784 ~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-g~~~~A~~~l~~~~~~~~~ 847 (1004)
+.....+... +.++++++++.+.+.. .|+ ...+..+-..+.+. |. +
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~----------------~ 244 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGR----------------C 244 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCG----------------G
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCc----------------c
Confidence 8777766655 3355555555555432 222 22222121112111 00 0
Q ss_pred chhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHH-----HhcCChHHHHHHHHHHHHCCCCCC-HHHH
Q 048751 848 YASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAF-----KSSGKNDKALNTFMKMLDQGLEPD-IVTC 921 (1004)
Q Consensus 848 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~m~~~g~~pd-~~t~ 921 (1004)
. .. ....+.++++++.++++++..|. + .|+.+..++ ...|..+++...+.++.+ +.|. .--|
T Consensus 245 ~-----~~--~~~~~~l~~el~~~~elle~~pd-~--~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y 312 (331)
T 3dss_A 245 E-----LS--VEKSTVLQSELESCKELQELEPE-N--KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYL 312 (331)
T ss_dssp G-----CC--HHHHHHHHHHHHHHHHHHHHCTT-C--HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHH
T ss_pred c-----cc--hHHHHHHHHHHHHHHHHHhhCcc-c--chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHH
Confidence 0 00 12235677889999999988642 3 454433322 245778889999999987 6773 3334
Q ss_pred HHH
Q 048751 922 INL 924 (1004)
Q Consensus 922 ~~l 924 (1004)
.-+
T Consensus 313 ~d~ 315 (331)
T 3dss_A 313 DDL 315 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.44 E-value=7.6e-06 Score=72.78 Aligned_cols=94 Identities=23% Similarity=0.221 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
+..+...+...|++++|.+.++++.+... .+..++..++..+...|++++|...++++.+..|.+..++..++.++...
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 33333344444444444444444433221 13333444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 048751 759 GMLDEAIDAAEEMKL 773 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~ 773 (1004)
|++++|...++++.+
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 91 GDYDEAIEYYQKALE 105 (125)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 444444444444444
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.44 E-value=1.8e-06 Score=85.05 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--C
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKG------QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS----GLLR--D 779 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p--~ 779 (1004)
.++..+...+...|++++|...+++..+.. +....++..++..|...|++++|+..+++..+. +-.+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 344444444444444444444444444311 122334444455555555555555555444331 1011 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 780 VISYNQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 780 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
...+..+...+...|++++|...+++.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 223444455555555555555555554
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.44 E-value=4.5e-06 Score=75.42 Aligned_cols=116 Identities=9% Similarity=0.004 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 048751 676 QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLY 755 (1004)
Q Consensus 676 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (1004)
...+..+...+...|++++|...+++..+.... +..++..+..++...|++++|+..++++.+..|.+...+..++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 344555555566666666666666665554322 4555556666666666666666666666666666666666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048751 756 KTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATN 793 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 793 (1004)
...|++++|+..+++..+... .+...+..+..++...
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHh
Confidence 666666666666666665331 1234444444444443
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.42 E-value=1.4e-06 Score=88.53 Aligned_cols=211 Identities=11% Similarity=-0.007 Sum_probs=140.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 048751 754 LYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQV-------MACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTIL 825 (1004)
Q Consensus 754 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 825 (1004)
++ ..++...|.+.|.++.+.. |+ ...|..+ ...+...++..+++..+++.+ ++.|+......-
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~---- 86 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIA---- 86 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEE----
T ss_pred cc-cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhc----
Confidence 44 5789999999999999855 65 6788877 566666666666666555543 333332110000
Q ss_pred HcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHH
Q 048751 826 KKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNT 905 (1004)
Q Consensus 826 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 905 (1004)
..|-+.+ --+.-.........+..++...|++++|.+.++.+...+ |.+. ....++..+.+.|+|++|+..
T Consensus 87 -~~g~y~~------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~-~~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 87 -IGGLYGD------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-SEHL-VAWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp -CCTTTCC------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHH-HHHHHHHHHHHTTCHHHHHHH
T ss_pred -cCCcccc------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CchH-HHHHHHHHHHHcCCHHHHHHH
Confidence 0000000 000000000112233455666777777777777666554 2234 777788899999999999999
Q ss_pred HHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 048751 906 FMKMLDQGLEPD----IVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPN--ENLFKAVIDAYRNANREDLADLACQEM 979 (1004)
Q Consensus 906 ~~~m~~~g~~pd----~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m 979 (1004)
|+.... .|+ ...+..+..++...|++++|...+++....+..|. ...+...+.++.+.|+.++|..+++++
T Consensus 158 l~~a~~---~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 158 VKSAGK---WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HTTGGG---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhhc---cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 986654 233 34788889999999999999999999875554465 457788899999999999999999999
Q ss_pred HhhcCC
Q 048751 980 RTAFES 985 (1004)
Q Consensus 980 ~~~~~~ 985 (1004)
....+.
T Consensus 235 ~a~~P~ 240 (282)
T 4f3v_A 235 QTTHPE 240 (282)
T ss_dssp HHHSCC
T ss_pred HhcCCc
Confidence 876543
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.42 E-value=1.9e-05 Score=82.98 Aligned_cols=166 Identities=7% Similarity=-0.073 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----C--HH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDT-----VASNTMISLYAELGMVTEAESMFNDIREKGQV----D--AV 746 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~--~~ 746 (1004)
.+...+..+...|++++|.+.+....+....... ..+..+...+...|++++|...+++..+..+. . ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4555677888999999999999988775443211 22345666778889999999999998865422 1 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH---HCCC-CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCC-h
Q 048751 747 SFAAMMYLYKTMGMLDEAIDAAEEMK---LSGL-LRD--VISYNQVMACFATNGQLRQCGELLHEMLTQK----LLPD-N 815 (1004)
Q Consensus 747 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~ 815 (1004)
+|+.++..|...|++++|+..++++. +... .+. ..++..+...|...|++++|+.++++.++.. .... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 88999999999999999999999987 3221 111 2588889999999999999999999985431 1111 4
Q ss_pred hhHHHHHHHHHcCCCcHHH-HHHHHhHhh
Q 048751 816 GTFKVLFTILKKGGFPIEA-VKQLQSSYQ 843 (1004)
Q Consensus 816 ~~~~~l~~~~~~~g~~~~A-~~~l~~~~~ 843 (1004)
.++..+..++.+.|+.++| ..++++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4667777788888888888 666776553
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.42 E-value=5.1e-06 Score=74.72 Aligned_cols=114 Identities=13% Similarity=0.034 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
+..+...+...|++++|...++++..... .+...+..+..++...|++++|...++++.+..|.+...+..++.++...
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHh
Confidence 33444444444444444444444443322 13444444455555555555555555555555444555555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 048751 759 GMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNG 794 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 794 (1004)
|++++|+..+++..+... .+...+..+..++...|
T Consensus 94 ~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 94 NKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLR 128 (131)
T ss_dssp TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHh
Confidence 555555555555544321 12334444444444433
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.41 E-value=1.3e-06 Score=80.98 Aligned_cols=98 Identities=14% Similarity=0.099 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMAC 789 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 789 (1004)
+...+..+...+.+.|++++|+..|+++....|.+...|..++.+|...|++++|+..|+++..... .+...+..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 3445566677777778888888888877777777777777777777788888888888777777542 235667777777
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 048751 790 FATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~ 808 (1004)
+...|++++|...|++.++
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777754
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.41 E-value=1e-05 Score=71.88 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048751 641 EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL 720 (1004)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (1004)
...|..+...+...|++++|.++++++.+... .+..++..+...+...|++++|...++++.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 45566666777777777777777777766532 3566677777777777777777777777766543 356677778888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG 759 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 759 (1004)
+...|++++|...|+++.+..|.+...+..+..++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888888888888888888888877777777665543
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.41 E-value=3.5e-06 Score=81.00 Aligned_cols=120 Identities=8% Similarity=0.007 Sum_probs=75.9
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 048751 688 KIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL-YKTMGML--DEA 764 (1004)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A 764 (1004)
..|++++|...++...+... .+...+..+..+|...|++++|...|+++.+..|.+...+..++.+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34566666666666655443 2556666666777777777777777777776666666677777766 6666776 777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 765 IDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 765 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
+..++++.+... .+...+..+...+...|++++|...++++++.
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777766442 23556666666777777777777777776654
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.40 E-value=6.1e-06 Score=88.61 Aligned_cols=145 Identities=10% Similarity=0.020 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048751 641 EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL 720 (1004)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (1004)
...+..+...|.+.|++++|+..|++..+....... + ..+.+.++-. ....+|..+..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~~~~~--------~~~~~~~nla~~ 205 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--F-----------SNEEAQKAQA--------LRLASHLNLAMC 205 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--C-----------CSHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc--C-----------ChHHHHHHHH--------HHHHHHHHHHHH
Confidence 455666666666666777776666666654321110 0 0011111000 014567777888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH-
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQC- 799 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A- 799 (1004)
|.+.|++++|+..|+++.+..|.+..+|..++.+|...|++++|+..|+++++... .+...+..+..++...|++++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888887542 2466777777788888888777
Q ss_pred HHHHHHHH
Q 048751 800 GELLHEML 807 (1004)
Q Consensus 800 ~~~~~~~~ 807 (1004)
...++.|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44566653
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.39 E-value=2e-06 Score=79.69 Aligned_cols=100 Identities=14% Similarity=-0.064 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 048751 675 NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL 754 (1004)
Q Consensus 675 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 754 (1004)
+...+..+...+...|++++|...|+.+....+. +...|..+..+|...|++++|+..|+++....|.++.++..++.+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 3445667777888889999999999988876543 777888888999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 048751 755 YKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 755 ~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
|...|++++|+..|++.++..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999988743
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.39 E-value=4.9e-06 Score=74.70 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL--LRD----VISYNQ 785 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~ 785 (1004)
.++..++..+.+.|++++|+..|+++.+..|.+..+|..++.+|...|++++|+..+++.++... .++ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 35667888888999999999999999998888999999999999999999999999988876421 111 246777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 048751 786 VMACFATNGQLRQCGELLHEMLTQKLLPDNGTFK 819 (1004)
Q Consensus 786 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 819 (1004)
+..++...|++++|++.|++.+.. .|++.+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 888888899999999999888753 45655443
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.39 E-value=7.4e-06 Score=73.61 Aligned_cols=119 Identities=18% Similarity=0.110 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048751 641 EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL 720 (1004)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (1004)
...+..+...+...|++++|+..++....... .+...+..+...+...|++++|...++...+.... +...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 45566677777777888888888877776532 45667777777888888888888888887765433 56777888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML 761 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 761 (1004)
+...|++++|...|+++.+..|.+...+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888999999999888888888888888888888877764
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=2.4e-06 Score=82.17 Aligned_cols=121 Identities=10% Similarity=0.051 Sum_probs=86.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCH--HH
Q 048751 653 ATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL-YAELGMV--TE 729 (1004)
Q Consensus 653 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 729 (1004)
..|++++|+..++...+... .+...+..+...+...|++++|...++++.+.... +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 45666667777776665532 45566777777777777777777777777665433 56666677777 6677887 88
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 730 AESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 730 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
|...|+++.+..|.+..++..++.+|...|++++|+..++++.+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888888888888888888888888888888888888888754
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.37 E-value=2.4e-06 Score=84.16 Aligned_cols=162 Identities=14% Similarity=0.036 Sum_probs=104.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCH
Q 048751 722 AELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS----GLLR-DVISYNQVMACFATNGQL 796 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 796 (1004)
...|++++|.+.++.+.........++..++..+...|++++|+..+++..+. +..+ ...++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45788999998666554433356778999999999999999999999888762 2212 245778888899999999
Q ss_pred HHHHHHHHHHHHCC-CCC-C----hhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhH
Q 048751 797 RQCGELLHEMLTQK-LLP-D----NGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGT 870 (1004)
Q Consensus 797 ~~A~~~~~~~~~~~-~~p-~----~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~ 870 (1004)
++|...+++.++.. -.+ + ...+..+...+...|++++|...+++++...+...
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------- 141 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--------------------- 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc---------------------
Confidence 99999998875420 011 1 12234444455555555555555554432110000
Q ss_pred HHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 871 CETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
....-..++..++.++...|++++|.+.+++..+
T Consensus 142 -------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 142 -------DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 0000123467888999999999999999988875
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.36 E-value=6.4e-06 Score=74.41 Aligned_cols=119 Identities=8% Similarity=-0.020 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048751 640 NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMIS 719 (1004)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (1004)
+...|..+...+...|++++|+..|++..+... .+...+..+...+...|++++|...++++.+.... +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 355666666667777777777777777666432 35566666777777777777777777777665432 5667777778
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 048751 720 LYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM 760 (1004)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 760 (1004)
++.+.|++++|...|++..+..|.+...+..+..++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888777777777777777766553
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.36 E-value=7.3e-06 Score=88.01 Aligned_cols=146 Identities=11% Similarity=0.011 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 605 QCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIK 684 (1004)
Q Consensus 605 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 684 (1004)
+...+..+...|.+.|++++|+..|++..... |+...+ ..+.+.++- . .....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~-~-------~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ-A-------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH-H-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH-H-------HHHHHHHHHHH
Confidence 56678889999999999999999999998753 321000 001111110 0 11345666777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 685 AYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEA 764 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 764 (1004)
++.+.|++++|+..++++++.... +..++..+..+|...|++++|+..|+++.+..|.+..++..+..++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777775543 6677788888888888888888888888888888888888888888888888887
Q ss_pred -HHHHHHHH
Q 048751 765 -IDAAEEMK 772 (1004)
Q Consensus 765 -~~~~~~~~ 772 (1004)
...+++|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 34555554
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1e-05 Score=72.46 Aligned_cols=94 Identities=15% Similarity=0.042 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
+..+...+.+.|++++|+..|++..+..+. +...|..+..++.+.|++++|+..|+++.+..|.+..+|..++.++...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 344444444555555555555554443322 3444555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 048751 759 GMLDEAIDAAEEMKL 773 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~ 773 (1004)
|++++|+..|++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 555555555555544
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.30 E-value=1.4e-06 Score=85.56 Aligned_cols=127 Identities=10% Similarity=0.041 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPD---------------TVASNTMISLYAELGMVTEAESMFNDIREKGQV 743 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (1004)
+..+...+...|++++|...+++..+...... ..++..+..+|.+.|++++|+..++++.+..|.
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 44444445555555555555555544322111 256777788888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 048751 744 DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCG-ELLHEM 806 (1004)
Q Consensus 744 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 806 (1004)
+..++..++.+|...|++++|+..|++..+... .+...+..+..++...++..++. ..+..+
T Consensus 121 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 121 NVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC---------
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888887542 24566677777776666666555 344444
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.7e-05 Score=70.92 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 711 TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACF 790 (1004)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 790 (1004)
...+..+...+.+.|++++|+..|++..+..|.+...|..++.+|...|++++|+..+++.++... .+...|..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 345677888899999999999999999999999999999999999999999999999999998652 3477888899999
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 048751 791 ATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 791 ~~~g~~~~A~~~~~~~~~~ 809 (1004)
...|++++|...|++.++.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 9999999999999988653
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.26 E-value=1.2e-05 Score=73.75 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFA 791 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 791 (1004)
..+..+...+.+.|++++|+..|+++....|.+...|..++.+|...|++++|+..|++...... .+...+..+..++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 34455666677777777777777777777777777777777777777777777777777776542 33566667777777
Q ss_pred HcCCHHHHHHHHHHHHH
Q 048751 792 TNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 792 ~~g~~~~A~~~~~~~~~ 808 (1004)
..|++++|...|++.++
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777777654
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.25 E-value=3.1e-05 Score=67.88 Aligned_cols=93 Identities=14% Similarity=0.054 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 048751 680 TSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG 759 (1004)
Q Consensus 680 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 759 (1004)
..+...+...|++++|...++........ +...+..+..++...|++++|...++++.+..|.+...+..++.++...|
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 33333444444444444444444332211 33344444444444444444444444444444444444444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 048751 760 MLDEAIDAAEEMKL 773 (1004)
Q Consensus 760 ~~~~A~~~~~~~~~ 773 (1004)
++++|...+++..+
T Consensus 87 ~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 87 RFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 44444444444443
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.24 E-value=1.9e-05 Score=70.78 Aligned_cols=104 Identities=18% Similarity=0.093 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVD-------AVSFAA 750 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~ 750 (1004)
.+..+...+.+.|++++|+..|++.++..+. +...|..+..+|.+.|++++|++.+++..+..|.+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4556667777777777777777777765443 56677777777888888888888887777655322 236777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048751 751 MMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYN 784 (1004)
Q Consensus 751 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 784 (1004)
++.++...|++++|++.|++.++.. ||..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEF--RDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHHH
Confidence 8888888888888888888887743 5655443
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.23 E-value=1.1e-05 Score=74.12 Aligned_cols=98 Identities=12% Similarity=-0.017 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYK 756 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 756 (1004)
..+..+...+.+.|++++|...|+.+....+. +...|..+..+|.+.|++++|+..|+++....|.++..+..++.+|.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 44556667788888888888888888876543 67788888888899999999999999999988888888999999999
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 048751 757 TMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 757 ~~g~~~~A~~~~~~~~~~~ 775 (1004)
..|++++|+..|++.++..
T Consensus 98 ~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999998888743
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.23 E-value=4.1e-05 Score=67.07 Aligned_cols=99 Identities=10% Similarity=0.045 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMAC 789 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 789 (1004)
....+..++..+...|++++|...|+++....|.+...+..++.++...|++++|+..+++..+... .+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 3456778888999999999999999999999999999999999999999999999999999988652 357788889999
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 048751 790 FATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~~ 809 (1004)
+...|++++|...+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 99999999999999998754
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.20 E-value=3.2e-05 Score=70.31 Aligned_cols=99 Identities=11% Similarity=0.025 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 709 PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMA 788 (1004)
Q Consensus 709 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 788 (1004)
.+...+..+...+...|++++|...|++..+..|.+..+|..++.++...|++++|+..+++..+... .+...|..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 35566667777777777777777777777777777777777777777777777777777777776542 24666777777
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 048751 789 CFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 789 ~~~~~g~~~~A~~~~~~~~~ 808 (1004)
++...|++++|...|++.++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777777654
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.19 E-value=2.4e-05 Score=71.08 Aligned_cols=100 Identities=12% Similarity=-0.083 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 048751 674 ANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMY 753 (1004)
Q Consensus 674 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 753 (1004)
.+...+..+...+...|++++|...++...+.... +...+..+..++...|++++|...++++.+..|.+..+|..++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 45667777778888888888888888887775543 56778888888888888888988888888888888888888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 048751 754 LYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 754 ~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
+|...|++++|+..|+++.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 999999999998888888764
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.18 E-value=2.7e-05 Score=73.57 Aligned_cols=97 Identities=7% Similarity=0.039 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 711 TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACF 790 (1004)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 790 (1004)
...+..+...+.+.|++++|+..|++..+..|.+...|..++.+|...|++++|+..+++.++... .+...|..+..++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 345556666666667777777777777666666666777777777777777777777776666442 2355666666666
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 048751 791 ATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 791 ~~~g~~~~A~~~~~~~~~ 808 (1004)
...|++++|...|++.++
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 777777777777766654
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.17 E-value=3.2e-05 Score=73.02 Aligned_cols=100 Identities=12% Similarity=-0.021 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 048751 675 NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL 754 (1004)
Q Consensus 675 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 754 (1004)
+...+..+...+...|++++|+..|++..+.... +...|..+..+|.+.|++++|+..|+++.+..|.+..+|..++.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3456777778888888888888888888876543 677888899999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 048751 755 YKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 755 ~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
|...|++++|+..|++.++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999998754
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.17 E-value=3.2e-05 Score=75.71 Aligned_cols=131 Identities=11% Similarity=-0.017 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRECGLWAN---------------QIVLTSLIKAYSKIGCLEGAKQVYEKMKEME 706 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 706 (1004)
..+..+...+...|++++|+..|++..+...... ...+..+..++...|++++|+..++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455556666666666666666666665422111 2677888888899999999999999988865
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 048751 707 GGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAI-DAAEEMKL 773 (1004)
Q Consensus 707 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 773 (1004)
. .+...+..+..+|...|++++|...|++..+..|.+..++..+..++...++.+++. ..+..+..
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 367788889999999999999999999999999999999999999988888777766 44555543
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.16 E-value=1.5e-05 Score=70.67 Aligned_cols=91 Identities=12% Similarity=0.038 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQ 795 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 795 (1004)
.+...+.+.|++++|+..|+++.+..|.+..+|..++.++...|++++|+..+++.++..+ .+...+..+..++...|+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 3445555666666666666666666666666666666666666666666666666665431 234555566666666666
Q ss_pred HHHHHHHHHHHH
Q 048751 796 LRQCGELLHEML 807 (1004)
Q Consensus 796 ~~~A~~~~~~~~ 807 (1004)
+++|+..+++.+
T Consensus 101 ~~~A~~~~~~al 112 (121)
T 1hxi_A 101 ANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.16 E-value=1.7e-05 Score=70.39 Aligned_cols=96 Identities=18% Similarity=-0.002 Sum_probs=85.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
+..+...+.+.|++++|...++++.+..+. +...|..+..++...|++++|+..|+++.+..|.+..++..++.+|...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 456677888999999999999999886654 7888889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCC
Q 048751 759 GMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~~~ 775 (1004)
|++++|+..+++.++..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998743
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.15 E-value=2e-05 Score=70.68 Aligned_cols=57 Identities=9% Similarity=0.038 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
.++..+...|++++|...|+++.+..|.+...+..++.++...|++++|+..++++.
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444443
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.13 E-value=1.4e-05 Score=69.50 Aligned_cols=95 Identities=9% Similarity=-0.053 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR--DVISYNQVMACF 790 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~ 790 (1004)
.+..+...+...|++++|...|+++.+..|.+..++..++.++...|++++|+..+++..+... . +...+..+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHH
Confidence 3445555566666666666666666666666666666666666666666666666666665432 2 345555666666
Q ss_pred HHc-CCHHHHHHHHHHHHH
Q 048751 791 ATN-GQLRQCGELLHEMLT 808 (1004)
Q Consensus 791 ~~~-g~~~~A~~~~~~~~~ 808 (1004)
... |++++|.+.+++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 666 666666666666543
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.13 E-value=2.3e-05 Score=70.28 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHH
Q 048751 676 QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVD-------AVSF 748 (1004)
Q Consensus 676 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~ 748 (1004)
...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...++++.+..|.+ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45677788888999999999999999887653 367788888999999999999999999988876544 7788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 749 AAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMA 788 (1004)
Q Consensus 749 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 788 (1004)
..++.++...|++++|...++++.+.. |+...+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 888888888888888888888888754 55555544443
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.09 E-value=2.1e-05 Score=68.21 Aligned_cols=98 Identities=15% Similarity=-0.008 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQV--DAVSFAAMMYL 754 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 754 (1004)
..+..+...+...|++++|...++++.+.... +...+..+..++...|++++|...|+++.+..|. +...+..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 34555666677777777777777777665433 5667777788888888888888888888888777 78888888888
Q ss_pred HHhc-CCHHHHHHHHHHHHHCC
Q 048751 755 YKTM-GMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 755 ~~~~-g~~~~A~~~~~~~~~~~ 775 (1004)
+... |++++|++.++++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888887755
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=8.6e-05 Score=68.31 Aligned_cols=97 Identities=18% Similarity=0.093 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 048751 676 QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPD----TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAM 751 (1004)
Q Consensus 676 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 751 (1004)
...+..+...+...|++++|...+++..+.. |+ ...+..+..+|...|++++|+..+++..+..|.+...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3444444555555555555555555554432 22 34455555556666666666666666666555555666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 048751 752 MYLYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 752 ~~~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
+.++...|++++|+..+++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 66666666666666666666553
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=0.00011 Score=67.61 Aligned_cols=113 Identities=16% Similarity=0.065 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048751 640 NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWAN----QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASN 715 (1004)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 715 (1004)
+...+..+...+...|++++|++.|+...+.. |+ ...+..+...+...|++++|...+++..+.... +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 45667777777777777777777777777643 44 566777777788888888888888887765433 566777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLY 755 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (1004)
.+..++...|++++|...|++..+..|.+...+..+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 8888888888888888888888888887777776655543
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=0.00041 Score=77.46 Aligned_cols=167 Identities=10% Similarity=0.010 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHH----CCCCCC-HH
Q 048751 502 TLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSV----VEYNVMIKAYGKSKLYDKAFSLFKVMKN----LGTWPD-EC 572 (1004)
Q Consensus 502 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~ 572 (1004)
++..++..|...|++++|...+..+....+..++. ...+.+...+...|++++|..++.+... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 45667777888888888888777765543332222 1233344444556788888888777643 222222 34
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhC--CC---CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc--CCC-C-C--H
Q 048751 573 TYNSLVQMFAGGDLMGQAVDLLAEMQGA--GF---KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRA--GVE-P-N--E 641 (1004)
Q Consensus 573 t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-p-~--~ 641 (1004)
++..+...+...|++++|..++..+... +. +....++..++..|...|++++|..++++.... .+. | . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6677777888888888888888776542 11 112346777788888888888888888776542 111 1 1 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMR 668 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 668 (1004)
..+..+...+...|++++|...|.+..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445666666777788888887776664
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.00 E-value=0.00015 Score=64.86 Aligned_cols=92 Identities=16% Similarity=0.044 Sum_probs=46.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHh
Q 048751 683 IKAYSKIGCLEGAKQVYEKMKEMEGGPD--TVASNTMISLYAELGMVTEAESMFNDIREKGQVD---AVSFAAMMYLYKT 757 (1004)
Q Consensus 683 i~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 757 (1004)
...+...|++++|...++.+.+..+... ...+..+..++.+.|++++|...|+++.+..|.+ ..++..++.++..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 3344455555555555555544332211 0244445555555555555555555555555544 4455555555555
Q ss_pred cCCHHHHHHHHHHHHHC
Q 048751 758 MGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 758 ~g~~~~A~~~~~~~~~~ 774 (1004)
.|++++|+..|+++.+.
T Consensus 89 ~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 55555555555555543
No 175
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.97 E-value=0.00011 Score=67.06 Aligned_cols=96 Identities=14% Similarity=0.062 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQV-------DAV-----SFAAMMYLYKTMGMLDEAIDAAEEMKLS-----G 775 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~ 775 (1004)
.+......+.+.|++++|+..|++..+..|. +.. .|..++.++.+.|++++|+..+++.++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3445666777788888888888888777766 433 8888888888889988888888888874 0
Q ss_pred CCCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 776 LLRD-VISY----NQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 776 ~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+.|+ ...| .....++...|++++|+..|++.++
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1365 5567 7888888888888888888888754
No 176
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.96 E-value=0.00036 Score=80.14 Aligned_cols=187 Identities=6% Similarity=-0.008 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC--
Q 048751 692 LEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGM----------VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG-- 759 (1004)
Q Consensus 692 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 759 (1004)
.++|++.++.+....++ +..+|+.-..++...|+ ++++++.++.+.+..|.+..+|..-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 35667777777775544 55566666666666666 777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHH
Q 048751 760 MLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNG-QLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQL 838 (1004)
Q Consensus 760 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l 838 (1004)
++++++..++++.+... .+..+|+.-...+.+.| .++++++.+.++++.. .-+...+.....++.+.+...++
T Consensus 124 ~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~---- 197 (567)
T 1dce_A 124 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS---- 197 (567)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS----
T ss_pred cHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccc----
Confidence 56777777777777553 45667777666677777 6777777777665432 12333333333333221110000
Q ss_pred HhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHH
Q 048751 839 QSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDK 901 (1004)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 901 (1004)
... . -...+.++++++.+++++... |.|..+|+.+...+.+.|+.++
T Consensus 198 ------~~~--~-------~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 ------GPQ--G-------RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp ------SSC--C-------SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ------ccc--c-------cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 000 0 001356788999999999887 5589999999999999888555
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.96 E-value=0.00016 Score=64.75 Aligned_cols=95 Identities=12% Similarity=-0.021 Sum_probs=80.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVDA---VSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD--VISYNQVMAC 789 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~ 789 (1004)
..+...+...|++++|...|+++.+..|.+. .++..++.++...|++++|+..++++.+...... ...+..+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3466778899999999999999999888776 6888999999999999999999999988653111 5678888889
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 048751 790 FATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~~ 809 (1004)
+...|++++|...|+++++.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 178
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.95 E-value=0.00011 Score=67.02 Aligned_cols=94 Identities=14% Similarity=0.036 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------C
Q 048751 680 TSLIKAYSKIGCLEGAKQVYEKMKEMEGGP------D-----TVASNTMISLYAELGMVTEAESMFNDIREK-------G 741 (1004)
Q Consensus 680 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 741 (1004)
......+.+.|++++|+..|++.++..+.. + ...|..+..++.+.|++++|+..+++.++. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334444555555555555555555433221 2 237888888899999999999999999988 8
Q ss_pred CCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 742 QVDAVSF----AAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 742 ~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
|.+..+| ...+.++...|++++|+..|++.++
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9998999 9999999999999999999999886
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.00022 Score=79.69 Aligned_cols=56 Identities=9% Similarity=0.081 Sum_probs=30.4
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 613 IAAYARLGQLSNAVDLFHEMRRAGVEPN----------------EVVYGSLINGFAATGKVEEALQYFRMMR 668 (1004)
Q Consensus 613 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 668 (1004)
...+.+.|++++|++.|..+.+...... ...+..++..|...|++++|.+++..+.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445666777777777777666431111 0124455555555566666555555543
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.93 E-value=5.9e-05 Score=70.58 Aligned_cols=95 Identities=15% Similarity=0.062 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQ--V----DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS----GLLRD-VI 781 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~ 781 (1004)
++..+...+...|++++|...+++..+..+ . ...++..++.++...|++++|+..+++..+. +..+. ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344455555556666666666655544321 1 1334555666666666666666666655432 11011 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 782 SYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 782 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
++..+...+...|++++|...+++.+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45556666666666666666666654
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.93 E-value=0.00012 Score=68.69 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048751 711 TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV 780 (1004)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 780 (1004)
...|..+..+|.+.|++++|+..++++.+..|.++.+|..++.+|...|++++|+..|++.++.. |+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~ 130 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--PAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CCC
Confidence 45677788888888888888888888888888888888888888888888888888888888754 553
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.93 E-value=0.0001 Score=82.82 Aligned_cols=163 Identities=11% Similarity=0.008 Sum_probs=107.3
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048751 620 GQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVY 699 (1004)
Q Consensus 620 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 699 (1004)
+++++|...|+...... +-....|..+...|.+.|++++|+..|++.++....... + ..+...++
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~~~- 312 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESKAS- 312 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHHHH-
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHHHH-
Confidence 34445554444332211 123567777888888888888888888887764221110 0 00011100
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048751 700 EKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD 779 (1004)
Q Consensus 700 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 779 (1004)
.. .....|..+..+|.+.|++++|+..|+++.+..|.+..+|..++.+|...|++++|+..|+++++.. |+
T Consensus 313 ~~-------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~ 383 (457)
T 1kt0_A 313 ES-------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQ 383 (457)
T ss_dssp HH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HH-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC
Confidence 00 1245677788888889999999999999988888888889999999999999999999999888754 44
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHH-HHHHH
Q 048751 780 -VISYNQVMACFATNGQLRQCGE-LLHEM 806 (1004)
Q Consensus 780 -~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 806 (1004)
...+..+..++...|+.++|.. .+..|
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577778888888888777653 44444
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.91 E-value=2e-05 Score=69.40 Aligned_cols=87 Identities=13% Similarity=0.056 Sum_probs=63.4
Q ss_pred cCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEG--GPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAID 766 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 766 (1004)
.|++++|+..+++..+.+. +.+..++..+..+|...|++++|+..|+++.+..|.+..++..++.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4677777788877777531 22445677777888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHCC
Q 048751 767 AAEEMKLSG 775 (1004)
Q Consensus 767 ~~~~~~~~~ 775 (1004)
.+++.++..
T Consensus 83 ~~~~al~~~ 91 (117)
T 3k9i_A 83 LLLKIIAET 91 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 888877643
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.88 E-value=8.4e-05 Score=69.50 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C----CHHH
Q 048751 644 YGSLINGFAATGKVEEALQYFRMMRECGLW-AN----QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGG-P----DTVA 713 (1004)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~ 713 (1004)
+..+...+...|++++|+..+++..+.... .+ ..++..+...+...|++++|...+++..+.... . ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444444555554444444321100 01 124445555555666666666666554432110 0 1334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 714 SNTMISLYAELGMVTEAESMFNDIREKG--Q----VDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
+..+...+...|++++|...+++..+.. . ....++..++..+...|++++|...+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5566777777788888877777766542 1 1234677788888888888888888887765
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.87 E-value=0.00015 Score=68.15 Aligned_cols=96 Identities=17% Similarity=0.083 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREK------------------GQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
.+...+..+.+.|++++|+..|++..+. .|.+..+|..++.+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4556667777777777777777777665 4455678889999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 775 GLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 775 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
.. .+...|..+..++...|++++|...|++.+..
T Consensus 93 ~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 52 34778888999999999999999999988754
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.86 E-value=0.00014 Score=81.74 Aligned_cols=146 Identities=12% Similarity=0.016 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 605 QCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIK 684 (1004)
Q Consensus 605 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 684 (1004)
....+..+...|.+.|++++|+..|++..+.. |+...+ .-+... .... .....|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~----~~~~----~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESK----ASES----FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHH----HHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHH----HHHH----HHHHHHHHHHH
Confidence 45678888999999999999999999988742 221000 001110 0100 12346667777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 685 AYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEA 764 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 764 (1004)
+|.+.|++++|+..++++++.... +...|..+..+|...|++++|+..|+++.+..|.+..++..+..++...+++++|
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888887776543 6777888888888888888888888888888888888888888888888888777
Q ss_pred HH-HHHHHH
Q 048751 765 ID-AAEEMK 772 (1004)
Q Consensus 765 ~~-~~~~~~ 772 (1004)
.+ .+.+|.
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 63 344443
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.85 E-value=0.00012 Score=79.33 Aligned_cols=139 Identities=6% Similarity=-0.040 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048751 641 EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL 720 (1004)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (1004)
...+..+...+.+.|++++|++.|++.++.- +.. ......+++.. .. ..+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~-------~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK-------LQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG-------GH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH-------HH-HHHHHHHHHHHHH
Confidence 4567778888888888888888888776520 000 00001111111 00 1134566777777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCG 800 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 800 (1004)
|.+.|++++|+..++++.+..|.+..+|..++.+|...|++++|+..|+++.+... .+...+..+..++...++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887777788888888888888888888888888777542 24556666666666666655554
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.85 E-value=3.4e-05 Score=87.00 Aligned_cols=119 Identities=12% Similarity=0.025 Sum_probs=86.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHH
Q 048751 684 KAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDE 763 (1004)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 763 (1004)
..+.+.|++++|.+.+++..+.... +..+|..+..+|.+.|++++|++.++++.+..|.+..+|..++.+|...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3455677888888888877775433 577788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 048751 764 AIDAAEEMKLSGLLRDVISYNQVMAC--FATNGQLRQCGELLH 804 (1004)
Q Consensus 764 A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 804 (1004)
|++.++++.+... .+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888887542 123445555544 777888888888887
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.83 E-value=0.00018 Score=78.02 Aligned_cols=140 Identities=10% Similarity=0.050 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKA 685 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 685 (1004)
...+..+...+.+.|++++|+..|++..+. .++. ......+++. +. -+.+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~~~-------~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADGA-------KL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHHG-------GG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHHHH-------HH-HHHHHHHHHHHHHH
Confidence 456888889999999999999999988752 0100 0001111111 11 01234577888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048751 686 YSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAI 765 (1004)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 765 (1004)
|.+.|++++|+..++++.+.... +..++..+..+|...|++++|+..|+++.+..|.+...+..+..++...++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998886543 67788889999999999999999999999999999999999998888888877765
Q ss_pred H
Q 048751 766 D 766 (1004)
Q Consensus 766 ~ 766 (1004)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 190
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.79 E-value=6e-05 Score=85.00 Aligned_cols=121 Identities=15% Similarity=0.102 Sum_probs=95.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048751 647 LINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGM 726 (1004)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 726 (1004)
+...+.+.|++++|++.|++..+... .+...+..+..++.+.|++++|++.+++..+.... +..++..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 34456677888888888888877643 45778888888888899999999999888886543 67788889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 048751 727 VTEAESMFNDIREKGQVDAVSFAAMMYL--YKTMGMLDEAIDAAE 769 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 769 (1004)
+++|++.|+++.+..|.+..++..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999888887787777777 888899999999988
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.72 E-value=4.3e-05 Score=67.23 Aligned_cols=85 Identities=9% Similarity=-0.018 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHhCCC--CCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048751 445 NMVQEAEAVIIEMEKCGL--HIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETV 522 (1004)
Q Consensus 445 g~~~~A~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 522 (1004)
|++++|+..|++.++.+. +.+...+..+..++...|++++|...|++++...|.++.++..++.++...|++++|...
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444444321 112234444555555555555555555555555555666666666666666666666666
Q ss_pred Hhhhhhh
Q 048751 523 FYGKRDL 529 (1004)
Q Consensus 523 ~~~~~~~ 529 (1004)
|.+....
T Consensus 84 ~~~al~~ 90 (117)
T 3k9i_A 84 LLKIIAE 90 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6665554
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.70 E-value=0.002 Score=73.92 Aligned_cols=136 Identities=6% Similarity=-0.048 Sum_probs=60.5
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHH
Q 048751 622 LSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATG--KVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIG-CLEGAKQV 698 (1004)
Q Consensus 622 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~ 698 (1004)
++++++.++.+.+.. +-+..+|+.-...+.+.+ +++++++.++++.+... -+...|+.-...+.+.| .++++++.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHH
Confidence 445555555554432 233444444444444444 34455555555444432 24444444444444444 44444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 048751 699 YEKMKEMEGGPDTVASNTMISLYAEL--------------GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM 760 (1004)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 760 (1004)
++++++..+. +..+|+....++.+. +.+++|.+.++++....|.+..+|..+...+.+.++
T Consensus 167 ~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 167 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 4444443332 344444443333332 234444444444444444444444444444444443
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.66 E-value=8.1e-05 Score=67.74 Aligned_cols=92 Identities=14% Similarity=0.048 Sum_probs=55.8
Q ss_pred cHHHHHHHHhHhhccCCchhh-hHHHHHHHHHhh----------hHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcC--
Q 048751 831 PIEAVKQLQSSYQEVKPYASE-AIITSVYSVVGL----------NALALGTCETLIKAEAYLDSFIYNVAIYAFKSSG-- 897 (1004)
Q Consensus 831 ~~~A~~~l~~~~~~~~~~~~~-~~~~~l~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 897 (1004)
+++|++.++.+++..|..... ..|+..+...++ +++|+..|+++++.. |.+..+|+.++.+|...|
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhccc
Confidence 445555555555555544442 224444444443 457777777777776 336677777777777664
Q ss_pred ---------ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048751 898 ---------KNDKALNTFMKMLDQGLEPDIVTCINLV 925 (1004)
Q Consensus 898 ---------~~~~A~~~~~~m~~~g~~pd~~t~~~l~ 925 (1004)
++++|++.|+++++ +.|+...|...+
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 67777777777776 567655444433
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.64 E-value=0.00011 Score=82.23 Aligned_cols=87 Identities=10% Similarity=0.016 Sum_probs=51.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-----CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHH
Q 048751 721 YAELGMVTEAESMFNDIREKG-----QVD---AVSFAAMMYLYKTMGMLDEAIDAAEEMKL-----SGL-LRD-VISYNQ 785 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~-~~~~~~ 785 (1004)
+...|++++|+.++++..+.. +.+ ..+++.|+.+|...|++++|+.++++.++ .|. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345566666666666655432 222 23566666677777777777766666553 121 122 345677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 048751 786 VMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 786 l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
|...|...|++++|..++++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777777777777776653
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.61 E-value=0.00015 Score=65.92 Aligned_cols=93 Identities=15% Similarity=0.044 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 048751 690 GCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGM----------VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG 759 (1004)
Q Consensus 690 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 759 (1004)
+.+++|.+.++...+..+. +...|..+..++...++ +++|+..|++..+.+|.+..+|..++.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 3444455555544444332 44444444444444433 457777777777777777777777777777664
Q ss_pred -----------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 760 -----------MLDEAIDAAEEMKLSGLLRDVISYNQ 785 (1004)
Q Consensus 760 -----------~~~~A~~~~~~~~~~~~~p~~~~~~~ 785 (1004)
++++|+..|++.++. .|+...|..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 677777777777663 355444433
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.59 E-value=0.00013 Score=78.13 Aligned_cols=147 Identities=13% Similarity=0.076 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048751 641 EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL 720 (1004)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (1004)
...+..+...+.+.|++++|+..|++..... |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 5667777888888888999999888887743 33321 122333333332221 1367778888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHHcCCHHH
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMAC-FATNGQLRQ 798 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~ 798 (1004)
|.+.|++++|+..++++.+..|.+..+|..++.+|...|++++|+..|+++++.. |+ ...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988899999999999999999999999999987643 44 4444444444 234455666
Q ss_pred HHHHHHHHHH
Q 048751 799 CGELLHEMLT 808 (1004)
Q Consensus 799 A~~~~~~~~~ 808 (1004)
+...|.+|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 7777777653
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.59 E-value=0.00032 Score=61.23 Aligned_cols=79 Identities=15% Similarity=0.013 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 694 GAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 694 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
.|+..+++..+.... +...+..+...|...|++++|+..|+++.+..|.+..+|..++.+|...|++++|+..|++..+
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666665433 5667777777788888888888888888877777777888888888888888888888877765
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.58 E-value=0.00012 Score=78.54 Aligned_cols=150 Identities=11% Similarity=0.028 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKA 685 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 685 (1004)
...+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 556777888888999999999999998875 354432 223344444433221 1367788888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHhcCCHHHH
Q 048751 686 YSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL-YKTMGMLDEA 764 (1004)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A 764 (1004)
+.+.|++++|+..+++.++.... +...|..+..+|...|++++|+..|+++.+..|.+..++..+..+ ....+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998886543 778888999999999999999999999998888888888888777 3445667788
Q ss_pred HHHHHHHHHCC
Q 048751 765 IDAAEEMKLSG 775 (1004)
Q Consensus 765 ~~~~~~~~~~~ 775 (1004)
...|.++....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888887643
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.58 E-value=0.00019 Score=80.25 Aligned_cols=102 Identities=12% Similarity=0.003 Sum_probs=79.6
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc-----CC-C
Q 048751 883 SFIYNVAIYAFKSSGKNDKALNTFMKMLD-----QGL-EPD-IVTCINLVGCYGKAGLVEGVKRIHSQLKY-----GK-M 949 (1004)
Q Consensus 883 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~-~pd-~~t~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~ 949 (1004)
..+++.|+.+|...|++++|..+++++++ .|- .|+ ..+++.|...|...|++++|+.+++++.. .| -
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45789999999999999999999999885 232 344 44788999999999999999999987641 22 1
Q ss_pred CCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcC
Q 048751 950 EPN-ENLFKAVIDAYRNANREDLADLACQEMRTAFE 984 (1004)
Q Consensus 950 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 984 (1004)
-|+ ..+...+..++...|++++|+.++++++....
T Consensus 431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 233 34566777888899999999999999987653
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00024 Score=61.39 Aligned_cols=89 Identities=9% Similarity=0.040 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHH
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-------VIS 782 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~ 782 (1004)
+...+..+...+...|++++|+..|++..+..|.+..+|..++.++...|++++|+..+++.++.. |+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 345667778888888888888888888888888888888888888888888888888888888754 44 334
Q ss_pred HHHHHHHHHHcCCHHHHH
Q 048751 783 YNQVMACFATNGQLRQCG 800 (1004)
Q Consensus 783 ~~~l~~~~~~~g~~~~A~ 800 (1004)
+..+..++...|++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHhHhhhH
Confidence 444555555555444443
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.54 E-value=0.00084 Score=55.28 Aligned_cols=81 Identities=16% Similarity=0.084 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 711 TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACF 790 (1004)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 790 (1004)
...+..+...+...|++++|+..|++..+..|.+..++..++.++...|++++|+..+++..+... .+...+..+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 345566666777777777777777777777777777777777777777777777777777766432 2345555555554
Q ss_pred HH
Q 048751 791 AT 792 (1004)
Q Consensus 791 ~~ 792 (1004)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.0001 Score=63.86 Aligned_cols=94 Identities=12% Similarity=0.045 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHH
Q 048751 675 NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVD------AVSF 748 (1004)
Q Consensus 675 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~ 748 (1004)
+...+..+...+...|++++|.+.+++..+..+. +...+..+..++.+.|++++|+..++++.+..|.+ ..++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3445666666777777777777777777665433 56667777777777777777777777777777666 6666
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 048751 749 AAMMYLYKTMGMLDEAIDAAE 769 (1004)
Q Consensus 749 ~~l~~~~~~~g~~~~A~~~~~ 769 (1004)
..+..++...|++++|+..++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 667777777766665554443
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.41 E-value=0.0012 Score=57.53 Aligned_cols=79 Identities=8% Similarity=0.027 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 729 EAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 729 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+|+..|+++.+..|.+...+..++.+|...|++++|+..+++.++... .+...|..+..++...|++++|...|++.++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999999999999998652 3477888999999999999999999998864
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.39 E-value=0.0016 Score=53.60 Aligned_cols=83 Identities=20% Similarity=0.170 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 048751 676 QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLY 755 (1004)
Q Consensus 676 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (1004)
...+..+...+...|++++|...+++..+.... +..++..+..++.+.|++++|...|++..+..|.+..++..+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 445666777777788888888888877765433 5667778888888888888888888888888888888888888777
Q ss_pred HhcC
Q 048751 756 KTMG 759 (1004)
Q Consensus 756 ~~~g 759 (1004)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6544
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.30 E-value=0.0049 Score=55.66 Aligned_cols=110 Identities=14% Similarity=0.052 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 048751 656 KVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE----LGMVTEAE 731 (1004)
Q Consensus 656 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 731 (1004)
++++|++.|++..+.|. ++.. |...|...+..++|.+.|++..+.+ +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34445555555444442 2222 3333334444444555555444432 33444444444444 44555555
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 048751 732 SMFNDIREKGQVDAVSFAAMMYLYKT----MGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 775 (1004)
.+|++..+. .++.++..|..+|.. .+++++|+.+|++..+.|
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555555443 234444455555554 455555555555554443
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.24 E-value=0.0076 Score=54.35 Aligned_cols=112 Identities=11% Similarity=-0.116 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 048751 690 GCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT----MGMLDEAI 765 (1004)
Q Consensus 690 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 765 (1004)
+++++|.+.|++..+.+. ++.. |...|...+.+++|.+.|++..+. .++.++..|..+|.. .+++++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 467888888888888763 2332 667777777788888888888876 467788888888887 78888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 048751 766 DAAEEMKLSGLLRDVISYNQVMACFAT----NGQLRQCGELLHEMLTQKL 811 (1004)
Q Consensus 766 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 811 (1004)
.+|++..+.| +...+..|...|.. .+++++|..+|++..+.|.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8888888764 46677777778877 7888888888888876653
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.24 E-value=0.0015 Score=55.23 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
+...+..+..+|.+.|++++|+..|+++.+..|.+..+|..++.+|...|++++|+..+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455556666666666666666666666666666666666666666666666666666666554
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.14 E-value=0.023 Score=56.89 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=86.1
Q ss_pred hhhHhhhhHHHHHHhhhcc-CCchhHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHh-cC
Q 048751 862 GLNALALGTCETLIKAEAY-LDSFIYNVAIYAFKSS-----GKNDKALNTFMKMLDQGLEPD--IVTCINLVGCYGK-AG 932 (1004)
Q Consensus 862 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~g~~pd--~~t~~~l~~~~~~-~g 932 (1004)
+....|...++++++.++. .+..+|..|+..|.+. |+.++|.+.|++.++ +.|+ ..++....+.++. .|
T Consensus 177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 3445688889999998632 1466899999999995 999999999999998 6783 6788888888887 49
Q ss_pred ChhHHHHHHHHHHcCCCC--CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 048751 933 LVEGVKRIHSQLKYGKME--PNENLFKAVIDAYRNANREDLADLACQEMRTAF 983 (1004)
Q Consensus 933 ~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 983 (1004)
+.++|.+.+++....+-. |+-... ..++.++|..+++++..-|
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~la--------n~~~q~eA~~LL~~~~d~F 299 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLL--------VILSQKRARWLKAHVQDFF 299 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHH--------HHHHHHHHHHHHHTHHHHC
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHH--------HHHHHHHHHHHHHHhHHhc
Confidence 999999999998765544 443333 4466778888887766543
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.04 E-value=0.0029 Score=53.32 Aligned_cols=67 Identities=10% Similarity=-0.002 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 741 GQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 741 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
.|.++.++..++.+|...|++++|+..|+++++... .+...|..+..+|...|++++|...+++.++
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467888999999999999999999999999998653 3467888999999999999999999998764
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.77 E-value=0.0042 Score=52.07 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=46.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQVDAV-SFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
.+..+.+.|++++|...|+++.+..|.+.. .+..++.+|...|++++|+..|++.++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455667778888888888888888777777 88888888888888888888888887754
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.56 E-value=0.054 Score=56.74 Aligned_cols=68 Identities=10% Similarity=0.061 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCc
Q 048751 779 DVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPY 848 (1004)
Q Consensus 779 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~ 848 (1004)
+..+|..+...+...|++++|...+++++..+ |+...+..+...+.-.|++++|.+.+++++...|..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 34555555444555566666666666665443 454444455555555566666666665555555443
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.52 E-value=0.019 Score=47.25 Aligned_cols=68 Identities=10% Similarity=-0.063 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048751 709 PDTVASNTMISLYAELGM---VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL 776 (1004)
Q Consensus 709 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 776 (1004)
.+...+..+..++...++ .++|..++++..+.+|.++.+...++..+.+.|++++|+..|+++++...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 466777777777765544 68999999999999999999999999999999999999999999888653
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.50 E-value=0.0069 Score=50.67 Aligned_cols=82 Identities=21% Similarity=0.124 Sum_probs=57.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTV-ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM 760 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 760 (1004)
....+...|++++|...++++.+.... +.. .+..+..+|...|++++|.+.|+++.+..|.+..++.. +.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 345667778888888888888775543 556 77788888888888888888888888888777766532 34
Q ss_pred HHHHHHHHHHHH
Q 048751 761 LDEAIDAAEEMK 772 (1004)
Q Consensus 761 ~~~A~~~~~~~~ 772 (1004)
+.+++..+++..
T Consensus 77 ~~~a~~~~~~~~ 88 (99)
T 2kc7_A 77 VMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHHHHHh
Confidence 455555554443
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.42 E-value=0.0081 Score=65.84 Aligned_cols=44 Identities=2% Similarity=-0.078 Sum_probs=32.4
Q ss_pred hhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 868 LGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
++.+++.+-...|....+++.|+..|...|++++|+.+|+++++
T Consensus 367 L~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 367 IKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 33444444333344456799999999999999999999999885
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.37 E-value=0.041 Score=57.64 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=61.2
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 048751 740 KGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFK 819 (1004)
Q Consensus 740 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 819 (1004)
.++.++.+|..+...+...|++++|+..+++++..+ |+...|..+...+.-.|++++|.+.|.+... +.|...||.
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 347788888888888877888888888888888865 7777777788888888999999888888865 356666665
Q ss_pred HH
Q 048751 820 VL 821 (1004)
Q Consensus 820 ~l 821 (1004)
..
T Consensus 348 ~~ 349 (372)
T 3ly7_A 348 WI 349 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.29 E-value=0.0049 Score=67.57 Aligned_cols=63 Identities=10% Similarity=-0.071 Sum_probs=53.3
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHH-----CC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 883 SFIYNVAIYAFKSSGKNDKALNTFMKMLD-----QG-LEPD-IVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 883 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g-~~pd-~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
..+++.|+.+|...|++++|+.+++++++ .| -.|+ ..+++.|...|...|++++|+.+++++.
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 45789999999999999999999999985 23 2455 4478999999999999999999998764
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.19 E-value=0.34 Score=48.49 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHH
Q 048751 727 VTEAESMFNDIREKGQV--DAVSFAAMMYLYKTM-----GMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATN-GQLRQ 798 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~ 798 (1004)
...|...+++..+.+|. +..+|..++..|... |+.++|.+.|++.++.+..-+..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 67888889999999887 777999999999985 89999999999999865322477888888888884 99999
Q ss_pred HHHHHHHHHHCCCC--CChh
Q 048751 799 CGELLHEMLTQKLL--PDNG 816 (1004)
Q Consensus 799 A~~~~~~~~~~~~~--p~~~ 816 (1004)
|.+++++.+..... |+..
T Consensus 259 a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHcCCCCCCCChh
Confidence 99999999887655 5543
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.17 E-value=0.02 Score=62.79 Aligned_cols=97 Identities=8% Similarity=-0.010 Sum_probs=60.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHC---CCCCC----hhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHH
Q 048751 789 CFATNGQLRQCGELLHEMLTQ---KLLPD----NGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVV 861 (1004)
Q Consensus 789 ~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~ 861 (1004)
.+...|++++|..++++.++. -+.|+ ..++..+..+|...|++++|+.+++++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~-------------------- 355 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRT-------------------- 355 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH--------------------
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHH--------------------
Confidence 344556666666666666532 12222 124455555566666666666655553
Q ss_pred hhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 862 GLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 862 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
++.+++.+-...|....+++.|+..|...|++++|+.+++++++
T Consensus 356 ------L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 356 ------MEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ------HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444443333343456789999999999999999999999885
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.05 E-value=0.019 Score=62.99 Aligned_cols=60 Identities=15% Similarity=0.030 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 748 FAAMMYLYKTMGMLDEAIDAAEEMKL-----SG-LLRD-VISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 748 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
++.++.+|...|++++|+.+++++++ .| ..|+ ..+++.|...|...|++++|..++++.+
T Consensus 332 ~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 332 LDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34444444444444444444444332 11 1122 3456667777777777777777766653
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.82 E-value=0.056 Score=48.47 Aligned_cols=81 Identities=11% Similarity=0.051 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 048751 727 VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG---MLDEAIDAAEEMKLSGLLR--DVISYNQVMACFATNGQLRQCGE 801 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~ 801 (1004)
...+++.|.+..+.++++..+...++.++++.+ ++++++.+++++.+.. .| +...+..+.-++.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 345555566555556666666666666666666 4556666666666644 13 23444555556667777777777
Q ss_pred HHHHHHH
Q 048751 802 LLHEMLT 808 (1004)
Q Consensus 802 ~~~~~~~ 808 (1004)
+++.+++
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776654
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.68 E-value=0.21 Score=60.58 Aligned_cols=129 Identities=13% Similarity=0.151 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
..++..+.+.|..++|+++.+... .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 445555555666666655442111 0112234556666666664322 2556666777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
|+++.|++.|.++.. |..+...|...|+.+...++.+.....|. ++....+|.+.|++++|++++.
T Consensus 695 ~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp TCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 777777776666543 23344444445555554444444444331 2222333444555555555554
Q ss_pred H
Q 048751 805 E 805 (1004)
Q Consensus 805 ~ 805 (1004)
+
T Consensus 761 ~ 761 (814)
T 3mkq_A 761 K 761 (814)
T ss_dssp H
T ss_pred H
Confidence 4
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.65 E-value=0.1 Score=46.78 Aligned_cols=84 Identities=5% Similarity=-0.025 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLYAELG---MVTEAESMFNDIREKG-Q-VDAVSFAAMMYLYKTMGMLDEAIDA 767 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~ 767 (1004)
..+.+.|.+..+.+. ++..+...+..++++.. ++++++.+|+.+.+.. | .+...+..++-+|.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 445555555555444 57777777777788777 5668888888887776 3 2456777777888888888888888
Q ss_pred HHHHHHCCCCCC
Q 048751 768 AEEMKLSGLLRD 779 (1004)
Q Consensus 768 ~~~~~~~~~~p~ 779 (1004)
++.+++. .|+
T Consensus 94 ~~~lL~i--eP~ 103 (152)
T 1pc2_A 94 VRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHH--CTT
T ss_pred HHHHHhc--CCC
Confidence 8888874 364
No 223
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.59 E-value=5.4 Score=47.31 Aligned_cols=191 Identities=14% Similarity=0.057 Sum_probs=103.5
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C-----CCHHHHHHHHHH
Q 048751 615 AYARLGQLSNAVDLFHEMRRAGVEPN--EVVYGSLINGFAATGKVEEALQYFRMMRECGL--W-----ANQIVLTSLIKA 685 (1004)
Q Consensus 615 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----~~~~~~~~li~~ 685 (1004)
+....|+.++++.+++.....+-..+ ...-..+.-+....|..+++..++.......- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45567888888877766553210122 23334444556666666677777776554311 0 111112222223
Q ss_pred HHHcCC-HHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHH
Q 048751 686 YSKIGC-LEGAKQVYEKMKEMEGGPDTV--ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLD 762 (1004)
Q Consensus 686 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 762 (1004)
+...|. -+++.+.+..+....- .... .--+|.-.+.-.|+-+-...+++.+.+....+..-...++-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 333332 2455666665554221 1111 11233344556677777777777776654334444455555666778888
Q ss_pred HHHHHHHHHHHCCCCCCHH-HH---HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 763 EAIDAAEEMKLSGLLRDVI-SY---NQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 763 ~A~~~~~~~~~~~~~p~~~-~~---~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
.+..+.+.+... .++. -| .++.-+|+..|+......+++.+.+.
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d 589 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD 589 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC
Confidence 888888887763 3322 22 23444667788876666688887754
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.53 E-value=0.33 Score=58.75 Aligned_cols=123 Identities=11% Similarity=0.037 Sum_probs=76.1
Q ss_pred HHHHhcCChHHHHH-HHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048751 334 DLYGKAGRLQDAAN-VFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNI 412 (1004)
Q Consensus 334 ~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 412 (1004)
......+++++|.+ ++..+ |+......++..+.+.|..++|.++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33445788888876 44211 112223566667777888888876653211 112344567888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHH
Q 048751 413 NAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIF 489 (1004)
Q Consensus 413 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 489 (1004)
++|+++.+.+ .+...|..+...+.+.|+++.|.++|..+.. +..+...+...|+.+...++.
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 8888775443 4667888888888888888888888887642 344555555666666544443
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.35 E-value=0.1 Score=42.77 Aligned_cols=64 Identities=8% Similarity=-0.051 Sum_probs=43.5
Q ss_pred CCcHHHHHHHHHhcCC---HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhh
Q 048751 466 EHSVPGVMKMYINEGL---LHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDL 529 (1004)
Q Consensus 466 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 529 (1004)
+..+..+..++...++ .++|..++++.+..+|.++.+...++..+.+.|++++|+..|..+.+.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3344445555543333 567777777777777777777777777777777777777777777663
No 226
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.24 E-value=6.9 Score=46.41 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 329 YNTLIDLYGKAGRLQDAANVFAEMLK 354 (1004)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (1004)
|..+++.+.+.++.+.+.++|+.+.+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67777788888888888888888764
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.02 E-value=0.2 Score=42.06 Aligned_cols=36 Identities=8% Similarity=-0.021 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVS 747 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 747 (1004)
.++..+..++.+.|+++.|...++++.+..|.+..+
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 344444444444444444444444444444444433
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.82 E-value=0.59 Score=43.00 Aligned_cols=102 Identities=15% Similarity=0.206 Sum_probs=70.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 685 AYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEA 764 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 764 (1004)
.....|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|++... +..+.-.|...|+.+.-
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHH
Confidence 345678888888877665 2677788888888888888888888877654 34556667777777776
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 765 IDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 765 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
.++.+.....|- ++....++...|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 666666655542 344455566778888888877543
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.62 E-value=1.7 Score=39.96 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=51.7
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhH
Q 048751 475 MYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDK 554 (1004)
Q Consensus 475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 554 (1004)
.....|+++.|.++.+.+ .+...|..|++.....|+++-|++.|.+..+ +..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHH
Confidence 344556666666665544 3455666666666666666666666665544 3444444555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 048751 555 AFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLL 594 (1004)
Q Consensus 555 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 594 (1004)
-.++-+.....|- ++.....+.-.|+++++.++|
T Consensus 79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHH
Confidence 4444443333331 223333333445555555554
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.52 E-value=0.36 Score=40.49 Aligned_cols=65 Identities=9% Similarity=-0.041 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKG-------QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
+..-+..|+..+.+.|++..|...|+.+.+.. ......+..++.+|.+.|++++|+..++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455567777777888888888877776542 234567777888888888888888888877764
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.39 E-value=0.006 Score=64.89 Aligned_cols=236 Identities=14% Similarity=0.085 Sum_probs=132.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048751 168 NVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVR 247 (1004)
Q Consensus 168 ~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 247 (1004)
|+..|..+|.+..+.|+|++....+.-.++. ..++..=+.|+-+|++.|+..+- .+.=-.|+..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~el-------Eefl~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAEL-------EEFINGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTT-------TSTTSCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHH-------HHHHcCCCcccHHHHHH
Confidence 4455667777777778888777765544433 33445556788888888875443 33223577777788888
Q ss_pred HHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCchh
Q 048751 248 VLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTS 327 (1004)
Q Consensus 248 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 327 (1004)
-|...|.++.|.-+|..+..-. .+.+. +++.+ ..........+.+++.
T Consensus 153 rcf~e~lYeAAKilys~isN~a------------kLAst-----------LV~L~---------~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFG------------RLAST-----------LVHLG---------EYQAAVDGARKANSTR 200 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCT------------TTSSS-----------SSSCS---------GGGSSTTTTTTCCSSC
T ss_pred HHHHccCHHHHHHHHHhCccHH------------HHHHH-----------HHHHH---------HHHHHHHHHHhcCChh
Confidence 8888888888877776532100 00000 00000 0111112334456677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYA 407 (1004)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 407 (1004)
||-.+-.+|...+.+.-|.-.--.++-. || ....++.-|-..|.+++-+.+++..+.. -......|+-|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 8888888888888887776543333321 11 1234555567778888877777776632 1245667777777777
Q ss_pred hcCCHHHHHHHHHHHHH-cCCCC------CHHHHHHHHHHHHHcCCHHHHH
Q 048751 408 DVGNINAALRYYWKIRE-VGLFP------DSVTQRAILHILCQRNMVQEAE 451 (1004)
Q Consensus 408 ~~g~~~~A~~~~~~m~~-~g~~p------~~~~~~~li~~~~~~g~~~~A~ 451 (1004)
+- +.++-++.++.... .++.. ....|.-++-.|++-.+++.|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 65 33333333322111 11111 1223666666666666666554
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.15 E-value=0.41 Score=42.21 Aligned_cols=111 Identities=12% Similarity=0.119 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCHH-HHHHHHH------HHHHcCCHHHHHHHHHHHHhCC
Q 048751 640 NEVVYGSLINGFAATGKV------EEALQYFRMMRECGLWANQI-VLTSLIK------AYSKIGCLEGAKQVYEKMKEME 706 (1004)
Q Consensus 640 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~~~~~-~~~~li~------~~~~~g~~~~A~~~~~~~~~~~ 706 (1004)
|..+|-..+..+.+.|+. +...++|++.... ++|+.. .|...+. .+...++.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555555555555555 5556666666553 333311 0111110 0122356666666666665543
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 048751 707 GGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMM 752 (1004)
Q Consensus 707 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 752 (1004)
-.. ..+|......-.+.|+++.|++++.+....+|.+.....+.+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 333 555555555556666666666666666666665555544443
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.51 E-value=0.57 Score=40.27 Aligned_cols=87 Identities=11% Similarity=0.058 Sum_probs=58.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCH
Q 048751 722 AELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDE---AIDAAEEMKLSGLLR--DVISYNQVMACFATNGQL 796 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 796 (1004)
.....+..+++.|......++++..+-..+++++.+..+..+ ++.+++++...+. | .......|.-++.+.|++
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHhhhH
Confidence 333445566666766666667777777778888887776555 7777777776542 3 233445566677788888
Q ss_pred HHHHHHHHHHHHC
Q 048751 797 RQCGELLHEMLTQ 809 (1004)
Q Consensus 797 ~~A~~~~~~~~~~ 809 (1004)
++|.++++.+++.
T Consensus 91 ~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 91 EKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877653
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.60 E-value=3e-05 Score=81.90 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048751 640 NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMIS 719 (1004)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (1004)
+..||..+-.+|...+.+..|.-.--.++-. +| -...++..|-..|.+++-+.+++...... .....+|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 4556666666666666665554443333321 11 12234455556666666666666554321 235566666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHc-C-C------CCHHHHHHHHHHHHhcCCHHHHH
Q 048751 720 LYAELGMVTEAESMFNDIREK-G-Q------VDAVSFAAMMYLYKTMGMLDEAI 765 (1004)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~-~-~------~~~~~~~~l~~~~~~~g~~~~A~ 765 (1004)
.|++- ++++-.+.++....+ + | .....|..++-.|.+-..+|.|.
T Consensus 272 LYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 66553 233222222211111 1 1 23334666666677666776654
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.25 E-value=1.1 Score=38.53 Aligned_cols=73 Identities=4% Similarity=-0.101 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 048751 674 ANQIVLTSLIKAYSKIGCLEG---AKQVYEKMKEMEGG-PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAV 746 (1004)
Q Consensus 674 ~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 746 (1004)
++..+-..+.-++.+..+... ++.+++.+.+.+.+ -.......|.-++.+.|++++|++.++.+.+..|.+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 444444444445554444433 55555555443210 01122233445555666666666666666655555443
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.03 E-value=1.5 Score=38.63 Aligned_cols=58 Identities=14% Similarity=0.046 Sum_probs=37.7
Q ss_pred HHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 048751 858 YSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP 916 (1004)
Q Consensus 858 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 916 (1004)
+...++.++|.++|+.+++.+... ...|.+.+.-=.+.|+.+.|.+++.+.+..+-+|
T Consensus 70 ~~ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 70 LKAIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 345567777777777777653232 5556666666667788888888888777654443
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.93 E-value=7.2 Score=33.62 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL 776 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 776 (1004)
+.-++.+...|+-++-.+++..+....++++.....++.+|.+.|+..+|.+++.++-++|+
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34444555555555555555554444445555555555555555555555555555555443
No 238
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.74 E-value=16 Score=37.43 Aligned_cols=173 Identities=13% Similarity=0.042 Sum_probs=91.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHcCCCCCHHHHHHHHH
Q 048751 364 FNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYY----WKIREVGLFPDSVTQRAILH 439 (1004)
Q Consensus 364 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~li~ 439 (1004)
|.++..-|.+.+++++|.+++-.-. ..+.+.|+...|-++- +-..+.++.+|......|+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3455556778888888887765432 1233445555444443 44445566677665555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 440 ILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEA 519 (1004)
Q Consensus 440 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 519 (1004)
.+.... ++...... -...|+++-.+.......++.....++..|.+.+++.+|
T Consensus 103 L~~~~~------------------~~~p~r~~---------fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~A 155 (336)
T 3lpz_A 103 CLRLFQ------------------PGEPVRKR---------FVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAA 155 (336)
T ss_dssp HHTTSC------------------TTCHHHHH---------HHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCC------------------CCCcHHHH---------HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 443322 11111111 112222222221122345678888899999999999999
Q ss_pred HHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 048751 520 ETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQ 598 (1004)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 598 (1004)
+..|- .|..+++..+..++-.+.+.+...+ ++.+.-..++. |...++...|..+++...
T Consensus 156 e~H~i-----lg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 156 EKHLV-----LGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHT-----TSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred HHHHH-----hcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 88884 2344444566555554444433211 12222233333 344567777777665554
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=89.49 E-value=9.6 Score=32.86 Aligned_cols=33 Identities=15% Similarity=-0.015 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC
Q 048751 534 KSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLG 566 (1004)
Q Consensus 534 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 566 (1004)
++....-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 123 ~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 123 VSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 333333344444444444444444444444443
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.00 E-value=6.7 Score=41.99 Aligned_cols=77 Identities=12% Similarity=0.035 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH-----cCCCCCcHHHHHHH
Q 048751 886 YNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLK-----YGKMEPNENLFKAV 959 (1004)
Q Consensus 886 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~l 959 (1004)
...++.++...|++++|+..+..+.. ..| +...+..++.++.+.|+..+|.+.|+.+. ..|++|.+.+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44566777888888888888888876 467 77788888888889999988888887653 35888887665554
Q ss_pred HHHHH
Q 048751 960 IDAYR 964 (1004)
Q Consensus 960 ~~~~~ 964 (1004)
-.++.
T Consensus 252 ~~il~ 256 (388)
T 2ff4_A 252 ERILR 256 (388)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 44443
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.24 E-value=2 Score=49.99 Aligned_cols=84 Identities=8% Similarity=0.022 Sum_probs=58.3
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------ChhHHHHHHHHHH-----c
Q 048751 881 LDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAG---------LVEGVKRIHSQLK-----Y 946 (1004)
Q Consensus 881 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g---------~~~~A~~~~~~~~-----~ 946 (1004)
.+..=|..|+....+.+++++|.+.|+..+.. .=++..+..|+..|.+.+ +.+.....+-++. .
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~w~~Rw 688 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDCRY 688 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHHhhhc
Confidence 34455999999999999999999999999874 347789999999998877 5565555554442 2
Q ss_pred CCCCCcHHHHHHHHHHHHhcC
Q 048751 947 GKMEPNENLFKAVIDAYRNAN 967 (1004)
Q Consensus 947 ~~~~p~~~~~~~l~~~~~~~g 967 (1004)
+. +-.......+...+.+.|
T Consensus 689 Y~-efs~~l~~~l~kLi~~~G 708 (754)
T 4gns_B 689 YN-YCQIFNLQLLEKLCNELG 708 (754)
T ss_dssp TB-CCCHHHHHHHHHHHHHHC
T ss_pred cc-ccCHHHHHHHHHHHHHhC
Confidence 22 233444455555554444
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.09 E-value=25 Score=35.84 Aligned_cols=173 Identities=10% Similarity=-0.020 Sum_probs=88.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHH
Q 048751 364 FNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRY----YWKIREVGLFPDSVTQRAILH 439 (1004)
Q Consensus 364 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~li~ 439 (1004)
|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-++ .+-..+.+..++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34555567777788887777654321 23344555554443 344444566666555555554
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 440 ILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEA 519 (1004)
Q Consensus 440 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 519 (1004)
.+.... ++......+ ...|.++-.+.......++.....++..|.+.|++.+|
T Consensus 101 l~~~~p------------------~~~~~r~~f---------i~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A 153 (312)
T 2wpv_A 101 LIAELD------------------PSEPNLKDV---------ITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEA 153 (312)
T ss_dssp HHTTCC------------------TTCTTHHHH---------HHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCC------------------CCCchHHHH---------HHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHH
Confidence 443211 111111111 11222222222122335778888899999999999999
Q ss_pred HHHHhhhhhhcCCCCCHHHHHHHHHHHHcC---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 048751 520 ETVFYGKRDLVGQKKSVVEYNVMIKAYGKS---KLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAE 596 (1004)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 596 (1004)
+..|-. +...|...+..++--+.+. |...++ +.+.-..++. |...++...|..+++.
T Consensus 154 ~~H~i~-----~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~ 213 (312)
T 2wpv_A 154 ERYFML-----GTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDI 213 (312)
T ss_dssp HHHHHT-----SCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHH
T ss_pred HHHHHh-----CCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHH
Confidence 887742 1222344555554444333 332221 1222222332 3456778888887776
Q ss_pred HH
Q 048751 597 MQ 598 (1004)
Q Consensus 597 m~ 598 (1004)
..
T Consensus 214 f~ 215 (312)
T 2wpv_A 214 FL 215 (312)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.74 E-value=9.2 Score=47.74 Aligned_cols=86 Identities=12% Similarity=0.048 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 048751 745 AVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD----VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKV 820 (1004)
Q Consensus 745 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 820 (1004)
...|..++..+.+.|.++.++++....++.....+ ...|..+..++...|++++|...+-.+..... -...++.
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 45678888899999999999988887776432222 12578888999999999999999988865433 4567777
Q ss_pred HHHHHHcCCCcH
Q 048751 821 LFTILKKGGFPI 832 (1004)
Q Consensus 821 l~~~~~~~g~~~ 832 (1004)
++..++..|..+
T Consensus 977 LV~~lce~~~~~ 988 (1139)
T 4fhn_B 977 FVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHCCHH
T ss_pred HHHHHHhCCChh
Confidence 777777666543
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.69 E-value=35 Score=37.10 Aligned_cols=95 Identities=11% Similarity=0.008 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC----HH
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEM--EGGPD---TVASNTMISLYAELGMVTEAESMFNDIREKG---QVD----AV 746 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~----~~ 746 (1004)
...|...+...|++.+|.+++..+... +.... ...+...+..|...+++..|..++.++.... +++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345666677777777777777766432 11111 2244555667777788888877777764321 222 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 747 SFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 747 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
.+..++..+...++|.+|...|.++.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 456667777777777777777666653
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.23 E-value=3.3 Score=48.15 Aligned_cols=127 Identities=15% Similarity=0.027 Sum_probs=76.6
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhC------CC-CCCHH---
Q 048751 645 GSLINGFAATGK-VEEALQYFRMMRECGLWANQIVLTSLIKAYSKIG-CLEGAKQVYEKMKEM------EG-GPDTV--- 712 (1004)
Q Consensus 645 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~------~~-~~~~~--- 712 (1004)
..++..+.-.++ ++.|+.+|+++.+....-+......++..+...+ +--+|.+++.+..+. .. ..+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445555555666 6889999999988653222222223333332222 223456665554421 11 11111
Q ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 713 -------ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEM 771 (1004)
Q Consensus 713 -------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 771 (1004)
....=++.+...|+++.|+++-++.....|.+..+|..|+.+|...|+++.|+-.+.-+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11111244556788888888888888888888888888888888888888888777765
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.97 E-value=2.5 Score=45.36 Aligned_cols=68 Identities=9% Similarity=0.044 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL-----SGLLRDVIS 782 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 782 (1004)
..++..+...|++++|...+..+....|.+...|..+|.+|...|+..+|++.|+++.+ .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 45666777788888888888888888888888888888888888888888888777643 366666543
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.47 E-value=3.8 Score=35.84 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=25.6
Q ss_pred hhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 048751 866 LALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP 916 (1004)
Q Consensus 866 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 916 (1004)
+++.+++.++...+.........|+-++.+.|++++|.++.+.+++ .+|
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP 108 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HER 108 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCC
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCC
Confidence 4555555555543222333444455566666666666666666665 455
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.60 E-value=16 Score=31.52 Aligned_cols=65 Identities=6% Similarity=-0.080 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 709 PDTVASNTMISLYAELGM---VTEAESMFNDIREKGQV-DAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 709 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
|+..+--.+..++.+..+ ..+++.+++.+.+.+|. .-..+..|+-++.+.|++++|.+..+.+++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344443344444444433 23445555554444432 233444444555555555555555555554
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.84 E-value=53 Score=35.66 Aligned_cols=95 Identities=13% Similarity=0.182 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--H
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKG--QVD----AVSFAAMMYLYKTMGMLDEAIDAAEEMKL----SGLLRD--V 780 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~ 780 (1004)
....|...|...|++.+|..++..+.... ..+ ...+...+..|...+++..|..++.++.. ....|+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 34568889999999999999999986532 222 34677788899999999999999888642 222233 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 781 ISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 781 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
..+...+..+...+++.+|...|.+..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 456777778888999999998888874
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.80 E-value=6.1 Score=35.65 Aligned_cols=116 Identities=9% Similarity=-0.095 Sum_probs=60.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHH
Q 048751 717 MISLYAELGMVTEAESMFNDIREKG--QVD-------AVSFAAMMYLYKTMGMLDEAIDAAEEMKLS--GLLRDVISYNQ 785 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~ 785 (1004)
-+..+...|.++.|+-+.+.+.... .++ ..++..+++++...|++..|...|++.+.. .+.....++..
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3566777788888888877755433 122 124566777777888888888877776532 11111111111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhcc
Q 048751 786 VMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEV 845 (1004)
Q Consensus 786 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 845 (1004)
+. ....... ......+...-..+..++.+.|++.+|+..++....+.
T Consensus 106 ~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 106 TG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred cc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 10 0000000 01122233344446667777888888888777755443
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=82.70 E-value=11 Score=32.45 Aligned_cols=74 Identities=5% Similarity=-0.071 Sum_probs=56.8
Q ss_pred cCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh
Q 048751 740 KGQVDAVSFAAMMYLYKTMGML---DEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDN 815 (1004)
Q Consensus 740 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 815 (1004)
.+.+++.+-..+++++.+..+. .+++.+++++.+.+..-....+..|.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 4567888888899999988764 46888999888866222355667778899999999999999999875 45654
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.41 E-value=7.7 Score=35.00 Aligned_cols=118 Identities=8% Similarity=-0.005 Sum_probs=67.4
Q ss_pred HHHHHHhhhHhhhhHHHHHHhhhc-cCCc-------hhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC-CHHHHHHHH
Q 048751 856 SVYSVVGLNALALGTCETLIKAEA-YLDS-------FIYNVAIYAFKSSGKNDKALNTFMKMLDQ-GLEP-DIVTCINLV 925 (1004)
Q Consensus 856 ~l~~~~~~~~~A~~~~~~~~~~~~-~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p-d~~t~~~l~ 925 (1004)
..+...+.++.|+-..+.++.... +++. .++..++.++...|++.+|...|++.++. ..-| +..+...+.
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~ 107 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG 107 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 345667777777777777665532 2232 15677788888888888888888887642 1112 221111110
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCC
Q 048751 926 GCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADLACQEMRTAFESP 986 (1004)
Q Consensus 926 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 986 (1004)
....... .....++.++-.-+..||.+.|++++|...++.++.+..++
T Consensus 108 ----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~ 155 (167)
T 3ffl_A 108 ----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTP 155 (167)
T ss_dssp ----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCH
T ss_pred ----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCH
Confidence 0000000 01233455665567888899999999999888877665543
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.92 E-value=28 Score=30.45 Aligned_cols=65 Identities=6% Similarity=-0.080 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 709 PDTVASNTMISLYAELGM---VTEAESMFNDIREKGQV-DAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 709 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
|+..+--.+..++.+... ..+++.+++.+....|. .-.....|+-++.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444445554443 33455555555554442 223444455555566666666666555555
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.03 E-value=4.4 Score=39.91 Aligned_cols=58 Identities=12% Similarity=0.002 Sum_probs=49.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048751 720 LYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD 779 (1004)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 779 (1004)
.+.+.|.+++|++....-.+..|.|...-..++..+|-.|+++.|.+-++...+.. |+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--ch
Confidence 45577889999999998888889999999999999999999999998888887743 55
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.69 E-value=18 Score=29.39 Aligned_cols=61 Identities=7% Similarity=0.060 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 048751 691 CLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAM 751 (1004)
Q Consensus 691 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 751 (1004)
+.-+..+-++.+...+.-|++.+..+.+.+|.+.+++..|.++|+.+..+.......|..+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 3445555566666666666666666666666666666666666666665543333334433
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.82 E-value=8.6 Score=37.88 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=62.8
Q ss_pred HhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChhHHHHH
Q 048751 865 ALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIV----TCINLVGCYGKAGLVEGVKRI 940 (1004)
Q Consensus 865 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~l~~~~~~~g~~~~A~~~ 940 (1004)
++|++..+.-++.. |-|...-..|+..||-.|+|++|.+-++...+ +.|+.. +|..+|.+ +..
T Consensus 14 ~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI~a----------E~~ 80 (273)
T 1zbp_A 14 QQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKA----------AQA 80 (273)
T ss_dssp HHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHH----------HHH
T ss_pred HHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHHHH----------HHH
Confidence 33333333333333 33666677788899999999999999998887 566533 45555543 111
Q ss_pred HHHHHcCCCCCc-----HHHHHHHHHHH--HhcCChhHHHHHHHHHHhhc
Q 048751 941 HSQLKYGKMEPN-----ENLFKAVIDAY--RNANREDLADLACQEMRTAF 983 (1004)
Q Consensus 941 ~~~~~~~~~~p~-----~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~~ 983 (1004)
-...-..+-.|. ..-...++.++ ...|+.++|.++........
T Consensus 81 R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 81 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 112222222221 22334555555 45699999999999887654
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=77.33 E-value=12 Score=30.26 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048751 184 KWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVL 249 (1004)
Q Consensus 184 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 249 (1004)
+.=++++-++.+...++.|++....+.+++|.|-+++.-|+.+|+.++.. +.+...+|..+++-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 34467778888888899999999999999999999999999999988765 334455677777544
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.94 E-value=53 Score=40.88 Aligned_cols=173 Identities=9% Similarity=0.024 Sum_probs=107.4
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHH
Q 048751 468 SVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYG 547 (1004)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 547 (1004)
....++..+...+..+.+.++...+ +.++.....++.+|...|++++|...|.+.....+.....
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l----------- 878 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWL----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ----------- 878 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCS-----------
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhc----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchh-----------
Confidence 3445666677777777776655433 3455556778888999999999999997754321111000
Q ss_pred cCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCC
Q 048751 548 KSKLYDKAFSLFKVMKNLGT--WPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQC----LTFSSVIAAYARLGQ 621 (1004)
Q Consensus 548 ~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~ 621 (1004)
... ..-+..+..... ..-..-|..++..+.+.+.++.+.++-...++..-+.+. ..|..+...+...|+
T Consensus 879 -~~~----~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ 953 (1139)
T 4fhn_B 879 -FAV----LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK 953 (1139)
T ss_dssp -CSS----HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC
T ss_pred -hhh----hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC
Confidence 000 000111111111 112334666777777788888888777766653212221 257788899999999
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 622 LSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQ 662 (1004)
Q Consensus 622 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 662 (1004)
+++|...+-.+.... --......|+..+|..|..+.-+.
T Consensus 954 ye~Ay~aL~~~pd~~--~r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 954 FDAAHVALMVLSTTP--LKKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp SGGGGHHHHHHHHSS--SCHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHhCCCHH--HHHHHHHHHHHHHHhCCChhhhhC
Confidence 999999888887653 346778888888888888766554
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.60 E-value=72 Score=32.72 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHH
Q 048751 394 PDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVM 473 (1004)
Q Consensus 394 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 473 (1004)
-|......+...|.+.+++.+|...|- .|-.++...+..++..+.+.+...++--. ....+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~dlf---------------iaRaV 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTAPLY---------------CARAV 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGHHHH---------------HHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccHHHH---------------HHHHH
Confidence 356677778888888888888877662 23333345555544444443332222111 12233
Q ss_pred HHHHhcCCHHHHHHHHHHh
Q 048751 474 KMYINEGLLHQAKIIFKKC 492 (1004)
Q Consensus 474 ~~~~~~g~~~~A~~~~~~~ 492 (1004)
-.|...++...|..+++..
T Consensus 195 L~yL~l~n~~~A~~~~~~f 213 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIF 213 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 4466677777777766554
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.51 E-value=87 Score=33.13 Aligned_cols=58 Identities=14% Similarity=0.071 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 750 AMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-----VISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 750 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
.++..|...|++.+|.+++.++.+.--..| ...+..-+..|...|++.++...+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 567788888888888887777765311112 2345556667778888888888777763
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=73.54 E-value=97 Score=32.77 Aligned_cols=165 Identities=15% Similarity=0.099 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCC---HHHHHHHHHHHHcC-CChhHHHHHHHHHHHCCCCCCHHHH---
Q 048751 502 TLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKS---VVEYNVMIKAYGKS-KLYDKAFSLFKVMKNLGTWPDECTY--- 574 (1004)
Q Consensus 502 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~--- 574 (1004)
+...|+..|.+.|+.++...++...+...+.-+- ......++..+... +..+.-.++..+..+..-. +..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4566777788888887777777665543222221 22344556665553 2333334444333321100 11112
Q ss_pred ---HHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHc--CCCCCHHHH
Q 048751 575 ---NSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQ-----CLTFSSVIAAYARLGQLSNAVDLFHEMRRA--GVEPNEVVY 644 (1004)
Q Consensus 575 ---~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~ 644 (1004)
..++..|...|++.+|.+++..+.+.--..| ..++..-+..|...+++..+...+...... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2456677777777777777777665211111 123445556677777777777777665431 122333222
Q ss_pred HH----HHHHHH-hcCCHHHHHHHHHHH
Q 048751 645 GS----LINGFA-ATGKVEEALQYFRMM 667 (1004)
Q Consensus 645 ~~----li~~~~-~~g~~~~A~~~~~~m 667 (1004)
.. -...+. ..+++..|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 11 122234 567777777666554
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=70.85 E-value=95 Score=31.54 Aligned_cols=124 Identities=12% Similarity=0.008 Sum_probs=63.5
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHccCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 350 AEMLKSGVAVDTITFNTMIYTCGSHGNLS-EAEALFCMME----ESR--ISPDTKTYNILLSLYADVGNINAALRYYWKI 422 (1004)
Q Consensus 350 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~-~A~~l~~~m~----~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 422 (1004)
+-..+.+++++......++..+.....-+ .=.++++.+. +.| ..-+...+..+...|.+.|++.+|...|-.
T Consensus 81 ev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~- 159 (312)
T 2wpv_A 81 EVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML- 159 (312)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-
Confidence 33344455666655555555544322111 1122333332 222 123667788888888888998888876631
Q ss_pred HHcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHh
Q 048751 423 REVGLFPDSVTQRAILHILCQR---NMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKC 492 (1004)
Q Consensus 423 ~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 492 (1004)
|-.-|...+..++.-+.+. |...++--.+ ...+-.|...|+...|..+++..
T Consensus 160 ---~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~---------------~RaVL~yL~l~n~~~A~~~~~~f 214 (312)
T 2wpv_A 160 ---GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFF---------------SRLVFNYLFISNISFAHESKDIF 214 (312)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH---------------HHHHHHHHHTTBHHHHHHHHHHH
T ss_pred ---CCCccHHHHHHHHHHHHHhcCCCCcchHHHHH---------------HHHHHHHHHhcCHHHHHHHHHHH
Confidence 1111244444444444443 4444432222 12233455677888887777655
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.30 E-value=34 Score=29.42 Aligned_cols=62 Identities=6% Similarity=0.073 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 048751 691 CLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMM 752 (1004)
Q Consensus 691 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 752 (1004)
+.-+..+-++.+...+.-|++.+..+.+.+|.+.+++..|.++|+.++.+..+....|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 33445555666666666777777777777777777777777777777665533333444433
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=68.09 E-value=24 Score=28.47 Aligned_cols=79 Identities=11% Similarity=0.043 Sum_probs=59.3
Q ss_pred hcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 048751 147 KSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLW 226 (1004)
Q Consensus 147 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 226 (1004)
.+.++|.-+-+|+..+.. ...+--+.+..|...|+|++|..+.+.+ +.||...|-.| +-.+.|.-+++..+
T Consensus 21 H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLAL--CEYRLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHH--HHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHH
Confidence 457899999999987643 3333344556677889999998876554 47888888777 55688999999999
Q ss_pred HHHHHhcC
Q 048751 227 IKHMKLRG 234 (1004)
Q Consensus 227 ~~~m~~~g 234 (1004)
+-++...|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 88887765
No 265
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=68.08 E-value=1.7e+02 Score=33.25 Aligned_cols=245 Identities=8% Similarity=-0.034 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048751 655 GKVEEALQYFRMMRECGLWANQIVLTSLIKAY----SKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEA 730 (1004)
Q Consensus 655 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 730 (1004)
.+.+.|...+........ .+......+-... ...+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 377899999988865432 3443333332222 33443556666666655433 2333333344444567999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048751 731 ESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQK 810 (1004)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 810 (1004)
...|+.|............-++.++...|+.++|..+|+++.. +. +|..++ +..+.|..-. . ....
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~--~fYg~l-Aa~~Lg~~~~-~------~~~~ 370 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QR--GFYPMV-AAQRIGEEYE-L------KIDK 370 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC--SHHHHH-HHHHTTCCCC-C------CCCC
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC--ChHHHH-HHHHcCCCCC-C------CCCC
Confidence 9999888764444566667778888899999999999999875 22 233322 2222332100 0 0000
Q ss_pred CCCC-hh-----hHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhcc--CC
Q 048751 811 LLPD-NG-----TFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAY--LD 882 (1004)
Q Consensus 811 ~~p~-~~-----~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~--~~ 882 (1004)
..+. .. .....+..+...|...+|...+........ ......+..+....|.+..++....+....+.. .-
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~-~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~ 449 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKS-KTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERF 449 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHS
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhC
Confidence 1110 00 112233456778888888888877665432 222233344445555555554433322111000 00
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048751 883 SFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD 917 (1004)
Q Consensus 883 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 917 (1004)
+..|..++..+.+.-.++.++-.---.++.++.|+
T Consensus 450 P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 450 PLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp CCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred CcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 12355555555555555554444333344455553
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=67.08 E-value=25 Score=30.22 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048751 187 ELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVL 249 (1004)
Q Consensus 187 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 249 (1004)
++++-++.+...++.|++......+++|-+-+++.-|+.+|+-.+.. +.+....|..+++-+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 56677777888888999999999999999999999999999988765 344455677776543
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.00 E-value=24 Score=38.23 Aligned_cols=58 Identities=7% Similarity=-0.156 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhhHhhhhHHHHHHhhhccCC--chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048751 853 IITSVYSVVGLNALALGTCETLIKAEAYLD--SFIYNVAIYAFKSSGKNDKALNTFMKML 910 (1004)
Q Consensus 853 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 910 (1004)
-++.++...|++++|.+.+.++........ ...+...++.+...++|..|...+.++.
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345555666666666666666555432221 2245555556666666666666666554
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.97 E-value=54 Score=30.62 Aligned_cols=72 Identities=15% Similarity=0.002 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048751 708 GPDTVASNTMISLYAE--LGMVTEAESMFNDIREKG--QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD 779 (1004)
Q Consensus 708 ~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 779 (1004)
..|+.-....+..--. .+...++..+|..|...+ ..-...|...+..+...|++++|..+|+..++.+-+|-
T Consensus 74 kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4466544444432222 455778888888888776 45677788888888888888888888888888777673
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=63.83 E-value=23 Score=28.50 Aligned_cols=79 Identities=11% Similarity=0.026 Sum_probs=59.3
Q ss_pred hcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 048751 147 KSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLW 226 (1004)
Q Consensus 147 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 226 (1004)
.+.++|.-+-+|+..+.. ...+--+.+..|...|+|.+|..+.+.+ +.||...|-.| +-.+.|.-+++..+
T Consensus 20 H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~r 90 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRR 90 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHH
Confidence 457899999999987643 3333344556677889999998865543 47888888776 55689999999999
Q ss_pred HHHHHhcC
Q 048751 227 IKHMKLRG 234 (1004)
Q Consensus 227 ~~~m~~~g 234 (1004)
+-++...|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 98887765
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=60.31 E-value=42 Score=27.08 Aligned_cols=74 Identities=12% Similarity=0.083 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 727 VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
.++|..+-+-+...+. ...+-.+-+..+...|+|++|..+.+.+- .||...|..|. -.+.|-.+++...+.++
T Consensus 23 HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNRL 95 (116)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHH
Confidence 4444444444433332 22222333445667777777776665543 47777776663 34566666666666555
Q ss_pred H
Q 048751 807 L 807 (1004)
Q Consensus 807 ~ 807 (1004)
-
T Consensus 96 a 96 (116)
T 2p58_C 96 A 96 (116)
T ss_dssp T
T ss_pred H
Confidence 3
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.33 E-value=1.8e+02 Score=31.27 Aligned_cols=61 Identities=10% Similarity=-0.043 Sum_probs=35.6
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh
Q 048751 468 SVPGVMKMYINEGLLHQAKIIFKKCQLDG---GLSSKTLAAIIDVYAEKGLWAEAETVFYGKRD 528 (1004)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 528 (1004)
+...++..|.+.|+++.|.+.+.++.... ......+..+++++...+++..+.....++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45566666666666666666666654322 22234555566666666666666666555443
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=56.51 E-value=41 Score=27.12 Aligned_cols=51 Identities=12% Similarity=-0.039 Sum_probs=30.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 752 MYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 752 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+..+...|+|++|..+.+.+- .||...|..|. -.+.|-.+++...+.++-.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHh
Confidence 345666777777766655432 47777666553 3466666666666655543
No 273
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=54.09 E-value=2.8e+02 Score=31.33 Aligned_cols=141 Identities=7% Similarity=0.017 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048751 329 YNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYAD 408 (1004)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 408 (1004)
|.....+ .+.|++..+..+...+...-+. .-..|..|...+ .....++....+++-... +.....-+..+..+.+
T Consensus 10 ~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~--p~~~~Lr~~~l~~l~~ 84 (618)
T 1qsa_A 10 YAQIKQA-WDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPTL--PPARTLQSRFVNELAR 84 (618)
T ss_dssp HHHHHHH-HHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHh
Confidence 4444333 3467777777766555332221 122444443332 222455555444442210 1111222334455666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcC
Q 048751 409 VGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEG 480 (1004)
Q Consensus 409 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 480 (1004)
.+++...+.++.. ...+...--....+....|+..+|......+-..|.. .+.....++..+.+.|
T Consensus 85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASG 150 (618)
T ss_dssp TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTT
T ss_pred CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCC
Confidence 6777666654432 1223333344556666777777777766666555432 3333344444444433
No 274
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.98 E-value=1.2e+02 Score=33.15 Aligned_cols=69 Identities=10% Similarity=0.093 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCh--hhHH-HHHHHHHcCCCcHHHHHHHHhHhhccCCc
Q 048751 780 VISYNQVMACFATNGQLRQCGELLHEMLTQ-KLLPDN--GTFK-VLFTILKKGGFPIEAVKQLQSSYQEVKPY 848 (1004)
Q Consensus 780 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~--~~~~-~l~~~~~~~g~~~~A~~~l~~~~~~~~~~ 848 (1004)
...+|.+++.|...+.+++|..+..+..-. ...++. .+|. .+...+.-.+++.+|.+.+..++...|+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 567889999999999999999999887310 001111 1222 23445666788888888888888776543
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=47.18 E-value=1.8e+02 Score=27.11 Aligned_cols=82 Identities=12% Similarity=0.041 Sum_probs=58.5
Q ss_pred HHHHHHHHcC------CCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 048751 732 SMFNDIREKG------QVDAVS---FAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGE 801 (1004)
Q Consensus 732 ~~~~~~~~~~------~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 801 (1004)
.++++..... ..|+.. |...+..+ ..++..++..+|..|..+|+--. +.-|......+...|++.+|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555554432 345553 33333333 24557899999999998887655 5677888888899999999999
Q ss_pred HHHHHHHCCCCCC
Q 048751 802 LLHEMLTQKLLPD 814 (1004)
Q Consensus 802 ~~~~~~~~~~~p~ 814 (1004)
+|+.-++.+-.|-
T Consensus 137 Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 137 LLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHTTCBSH
T ss_pred HHHHHHHcCCccH
Confidence 9999988887774
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.21 E-value=1.4e+02 Score=26.40 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048751 730 AESMFNDIREKG--QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR 778 (1004)
Q Consensus 730 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 778 (1004)
+..+|..|...+ ..-...|...+..+...|++++|..+|+..++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 555666555554 3345555556666666666666666666666555544
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.76 E-value=1.8e+02 Score=25.81 Aligned_cols=73 Identities=12% Similarity=0.082 Sum_probs=48.9
Q ss_pred CCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048751 162 QKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPT-NNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFP 237 (1004)
Q Consensus 162 ~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 237 (1004)
...|+-|+.-...-|.- + ...+++..+|..|..+|+--. +.-|..-...+-..|++.+|.++|+.-++++..|
T Consensus 61 ~~~YknD~RyLklWl~y-a--~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 61 KKKYHNDPRFISYCLKF-A--EYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CGGGTTCHHHHHHHHHH-H--TTBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccccCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34566666522222221 1 223457888888888876443 3447778888888999999999999888887777
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=41.47 E-value=1.1e+02 Score=31.86 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 328 TYNTLIDLYGKAGRLQDAANVFAEMLK 354 (1004)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (1004)
....+|.-|...|+.++|...++++..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 467788999999999999999988753
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.80 E-value=2e+02 Score=25.81 Aligned_cols=50 Identities=12% Similarity=-0.004 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048751 730 AESMFNDIREKG--QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD 779 (1004)
Q Consensus 730 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 779 (1004)
+..+|..|...+ ..-...|...+..+-..|++.+|.++|+..++.+..|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 445555555544 33444555555555555555555555555555554443
No 280
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=37.50 E-value=2.5e+02 Score=25.97 Aligned_cols=189 Identities=12% Similarity=0.097 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 623 SNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKM 702 (1004)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 702 (1004)
.++...+-.... .++...-...+..+.+.+. ..+...+..+... ++..+-...+.++.+.+..+....+.+.+
T Consensus 18 ~~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 90 (211)
T 3ltm_A 18 PEKVEMYIKNLQ---DDSYYVRRAAAYALGKIGD-ERAVEPLIKALKD---EDAWVRRAAADALGQIGDERAVEPLIKAL 90 (211)
T ss_dssp GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048751 703 KEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVIS 782 (1004)
Q Consensus 703 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 782 (1004)
.. ++..+-...+.++.+.|+.+....+.+.+ ..++...-...+.++...|..+..-.+.+.+.. ++..+
T Consensus 91 ~~----~~~~vr~~a~~aL~~~~~~~~~~~L~~~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d----~~~~v 159 (211)
T 3ltm_A 91 KD----EDGWVRQSAAVALGQIGDERAVEPLIKAL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKD----EDGWV 159 (211)
T ss_dssp TC----SSHHHHHHHHHHHHHHCCGGGHHHHHHHT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC----SSHHH
T ss_pred cC----CCHHHHHHHHHHHHHhCcHHHHHHHHHHH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcC----CCHHH
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHH
Q 048751 783 YNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIE 833 (1004)
Q Consensus 783 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 833 (1004)
-...+.++.+.+. .++...+.++.+. ++...-.....++.+.+....
T Consensus 160 r~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 160 RQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCCC
No 281
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.10 E-value=2.6e+02 Score=26.86 Aligned_cols=91 Identities=13% Similarity=0.061 Sum_probs=54.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC--CCCcC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 331 TLIDLYGKAGRLQDAANVFAEMLKS--GVAVD----TITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLS 404 (1004)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 404 (1004)
--++.+....++++|.+++++..+. ++++. .......+..-.....-.-+..+.+++. . .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHH
Confidence 3568888999999999999887653 22221 1111222333333333334444455553 2 445566666778
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 048751 405 LYADVGNINAALRYYWKIRE 424 (1004)
Q Consensus 405 ~~~~~g~~~~A~~~~~~m~~ 424 (1004)
.+.+.|+.++|.++|-+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 88889999999988865543
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.72 E-value=2.5e+02 Score=26.55 Aligned_cols=85 Identities=8% Similarity=-0.067 Sum_probs=46.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh--HHHHHHHHHH
Q 048751 176 LRALGRAQKWDELRLRWIEMAKNGVLPTNNT--YGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVT--MNTVVRVLKE 251 (1004)
Q Consensus 176 i~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~l~~~~~~ 251 (1004)
+..-++.|+.+.+..+++.+.+.+..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 3444566888887777776666655444321 223455566677765 3444556666554332 1233444456
Q ss_pred cCChhHHHHHHHH
Q 048751 252 VGEFDSADRFYKD 264 (1004)
Q Consensus 252 ~g~~~~A~~~~~~ 264 (1004)
.|+.+-...+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 6776665555543
No 283
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=34.79 E-value=1.8e+02 Score=28.35 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=13.5
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCC
Q 048751 442 CQRNMVQEAEAVIIEMEKCGLHIDE 466 (1004)
Q Consensus 442 ~~~g~~~~A~~~~~~m~~~g~~~~~ 466 (1004)
+..+......++++.+.+.|..++.
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~ 214 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNV 214 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSC
T ss_pred HHccccchHHHHHHHHHHcCCCCCC
Confidence 3445544445566666666655543
No 284
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=32.43 E-value=80 Score=32.79 Aligned_cols=62 Identities=15% Similarity=0.265 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCC
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM--LDEAIDAAEEMKLSGL 776 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~ 776 (1004)
+.++.-|...|+.++|.+.++.+....-....+...+..++-+.++ .+...+++..+...|+
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 3455566666666666666665542111122233333344433322 2344555555555554
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=31.80 E-value=1.6e+02 Score=27.90 Aligned_cols=84 Identities=11% Similarity=0.018 Sum_probs=41.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHH--HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHH
Q 048751 332 LIDLYGKAGRLQDAANVFAEMLKSGVAVDTIT--FNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKT--YNILLSLYA 407 (1004)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~--~~~li~~~~ 407 (1004)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 44555667888777777777666665554321 112333344566654 3344444555544321 112333344
Q ss_pred hcCCHHHHHHHH
Q 048751 408 DVGNINAALRYY 419 (1004)
Q Consensus 408 ~~g~~~~A~~~~ 419 (1004)
..|+.+-...++
T Consensus 88 ~~~~~~~~~~Ll 99 (241)
T 1k1a_A 88 EHRSPTCLRALL 99 (241)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 555554443333
No 286
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.20 E-value=2.2e+02 Score=27.46 Aligned_cols=30 Identities=10% Similarity=-0.095 Sum_probs=17.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048751 952 NENLFKAVIDAYRNANREDLADLACQEMRT 981 (1004)
Q Consensus 952 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 981 (1004)
........+..+.+.|+.++|.+++-+.++
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 344445555666666777776666655443
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.10 E-value=1.4e+02 Score=32.66 Aligned_cols=25 Identities=12% Similarity=0.395 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKM 702 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~ 702 (1004)
.++.++..|...+.++.|..+..+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3444445555555555555555544
No 288
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=29.66 E-value=1.6e+02 Score=26.50 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHcCChhHHHHHHHHhcccccccc---cccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCC
Q 048751 248 VLKEVGEFDSADRFYKDWCLGRLELD---DLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPR 324 (1004)
Q Consensus 248 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 324 (1004)
+|.+..++..|+..++.+..+.++.| +++++.+ -...-+
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~f--------------------------------------fvd~~D 112 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEM--------------------------------------FVDPGD 112 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTT--------------------------------------SCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCccccccccee--------------------------------------eeccch
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHH
Q 048751 325 LTSTYNTLIDLYGKAGRLQDAANVFAE 351 (1004)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~ 351 (1004)
-..-|+.+...+.+.|+.++|+..|..
T Consensus 113 kEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 113 EEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHhhhHhhh
No 289
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=29.27 E-value=2.4e+02 Score=24.02 Aligned_cols=65 Identities=14% Similarity=0.231 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHCCCC
Q 048751 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGN--LSEAEALFCMMEESRIS 393 (1004)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~A~~l~~~m~~~g~~ 393 (1004)
..+.++.-|...|+.++|...++++...... .......+..++-+.++ .+.+..++..+.+.|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4677899999999999999999998532111 23344556666666542 45677888888876644
No 290
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=27.06 E-value=5e+02 Score=26.23 Aligned_cols=169 Identities=11% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcC-----CCc-----------------------------
Q 048751 786 VMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKG-----GFP----------------------------- 831 (1004)
Q Consensus 786 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~----------------------------- 831 (1004)
+..-+...|.++.|++++++-+ |+..-...-..++..|... +.+
T Consensus 34 laadhvAAGsFetAm~lLnrQv--Givnf~PLk~~F~~~y~~s~~~l~~~~~~lp~l~~~~~r~~~e~~~~~~lP~i~~l 111 (325)
T 3mv2_A 34 LPAVLVAAGAFDAAVQALSKQV--GVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDTVSEDQILPYVPGL 111 (325)
T ss_dssp SHHHHHHTTCHHHHHHHHHHHH--CBCCCGGGHHHHHHHHHHTEEEECCSSTTSCCEEEECBSSCSSSCGGGCCBCCCCH
T ss_pred cHHHHHHccCHHHHHHHHHHHh--CccCchhhHHHHHHHHHHHhhhcccCCCCCCcchhhhcCCccccccccCCCCCCCH
Q ss_pred HHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 832 IEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 832 ~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
..-.+.++..++ +...|++++|++.|+.++ +...+.......+.+++.++.....+
T Consensus 112 ~~L~~~Lk~gyk--------------~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icrE 167 (325)
T 3mv2_A 112 DVVNEKMNEGYK--------------NFKLNKPDIAIECFREAI----------YRITLLMVDDAEDEKLAHKILETARE 167 (325)
T ss_dssp HHHHHHHHHHHH--------------HHHTTCHHHHHHHHHHHH----------HHHHTCCBCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------------HHhcCCHHHHHHHHHHHH----------HHhheeeeccHHHHHHHHHHHHHHHH
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCC
Q 048751 912 QGLEPDIVTCINLVGCYGKA---GLVEGVKRIHSQLKYGKMEPN--ENLFKAVIDAYRNANREDLADLACQEMRTAFESP 986 (1004)
Q Consensus 912 ~g~~pd~~t~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 986 (1004)
.....-+..-.+. .+..+..++.-.+...+++|. .-+...-+....+.+++-.|..+.+++....+.+
T Consensus 168 -------Yilal~iEl~Rr~l~~~~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 240 (325)
T 3mv2_A 168 -------YILGLSIELERRSLKEGNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG 240 (325)
T ss_dssp -------HHHHHHHHHHHHTCCTTCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred -------HHHHHHHHHHHHhcCcccHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Q ss_pred C
Q 048751 987 E 987 (1004)
Q Consensus 987 ~ 987 (1004)
+
T Consensus 241 ~ 241 (325)
T 3mv2_A 241 P 241 (325)
T ss_dssp H
T ss_pred H
No 291
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.92 E-value=3.5e+02 Score=24.29 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 048751 762 DEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPD 814 (1004)
Q Consensus 762 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 814 (1004)
+++..+|..|..+|+--. +.-|......+...|++.+|.++|+.-++.+-.|-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 347778899988887655 55677788888889999999999999888877774
No 292
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=26.12 E-value=3.4e+02 Score=29.65 Aligned_cols=76 Identities=8% Similarity=-0.016 Sum_probs=51.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFAT 792 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 792 (1004)
.|++...-...++.|...|.++....|.+...|+.|+-.....|+.-+|+-.|-+..... .|-..+...|...+.+
T Consensus 157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHHH
Confidence 344444455566778888888888888888888888887777777777777766666543 3556666666655543
No 293
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.10 E-value=4.7e+02 Score=26.33 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048751 327 STYNTLIDLYGKAGRLQDAANVFAEML 353 (1004)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 353 (1004)
.....+|.-|...|+.++|...++++.
T Consensus 4 k~~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 4 KTLTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 356778888999999999999988864
No 294
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=24.97 E-value=2.2e+02 Score=27.73 Aligned_cols=78 Identities=8% Similarity=-0.017 Sum_probs=38.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHH
Q 048751 368 IYTCGSHGNLSEAEALFCMMEESRISPDT---KTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVT--QRAILHILC 442 (1004)
Q Consensus 368 l~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~ 442 (1004)
+...+..|+.+-+..+++. .|..++. ...+.+ ...+..|+.....++.+.+.+.|..++... -.+.+...+
T Consensus 152 L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~ 227 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 3444556776555544432 1433332 222333 333455665555667777777776654321 123344445
Q ss_pred HcCCHHH
Q 048751 443 QRNMVQE 449 (1004)
Q Consensus 443 ~~g~~~~ 449 (1004)
+.|..+-
T Consensus 228 ~~~~~~~ 234 (285)
T 1wdy_A 228 EKKHLGL 234 (285)
T ss_dssp HTTCHHH
T ss_pred HcCCHHH
Confidence 5666543
No 295
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.96 E-value=1.6e+02 Score=27.94 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048751 729 EAESMFNDIREKG--QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR 778 (1004)
Q Consensus 729 ~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 778 (1004)
++..+|..|...+ ..-...|...+..+...|++.+|..+|+..++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555555544 2344455555555555555555555555555544444
No 296
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.36 E-value=3.4e+02 Score=23.96 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=9.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 048751 717 MISLYAELGMVTEAESMFNDI 737 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~ 737 (1004)
++.-|...|+.++|...++.+
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 444444444444444444444
No 297
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=23.10 E-value=8.6e+02 Score=27.57 Aligned_cols=22 Identities=5% Similarity=-0.334 Sum_probs=18.9
Q ss_pred HhcCChhHHHHHHHHHHhhcCC
Q 048751 964 RNANREDLADLACQEMRTAFES 985 (1004)
Q Consensus 964 ~~~g~~~~A~~~~~~m~~~~~~ 985 (1004)
.+.|++++|.+.++++..-|-+
T Consensus 549 ~~~g~~~~AL~~i~~L~llPl~ 570 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLPFS 570 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSCC-
T ss_pred HHcCCHHHHHHHHHhCCCCCCC
Confidence 6889999999999999877766
No 298
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=22.84 E-value=2.6e+02 Score=26.58 Aligned_cols=52 Identities=17% Similarity=0.090 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048751 186 DELRLRWIEMAKNGVLPT-NNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFP 237 (1004)
Q Consensus 186 ~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 237 (1004)
++...+|..|...|+--. +.-|..-...+-..|++.+|.++|+.-++++..|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 466778888888776443 3347777778888888888888888888887777
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.59 E-value=2.2e+02 Score=25.15 Aligned_cols=66 Identities=14% Similarity=0.228 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHCCCC
Q 048751 327 STYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGN--LSEAEALFCMMEESRIS 393 (1004)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~A~~l~~~m~~~g~~ 393 (1004)
...+.++.-|...|+.++|...++++...... ...+...+..++-+.++ .+.+..++..+.+.|+-
T Consensus 10 kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 10 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34678899999999999999999998532111 23344555666665433 45667888888776544
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=22.30 E-value=3.6e+02 Score=22.91 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=10.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 048751 717 MISLYAELGMVTEAESMFNDI 737 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~ 737 (1004)
++.-|...|+.++|...++.+
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 444444445555555544444
No 301
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.04 E-value=4.7e+02 Score=24.29 Aligned_cols=92 Identities=14% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHH---cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-----HhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048751 577 LVQMFA---GGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQ-----LSNAVDLFHEMRRAGVEPNEVVYGSLI 648 (1004)
Q Consensus 577 ll~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~p~~~~~~~li 648 (1004)
+|+++. +..+.+.|+-++.+|++.| .|....-..++.+.-.-|. +..|...++.....|.+--.......+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 95 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVV 95 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 048751 649 NGFAATGKVEEALQYFRMMRE 669 (1004)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~m~~ 669 (1004)
.-++..-+...+...++...+
T Consensus 96 iyLA~aPKSNs~y~A~~~A~~ 116 (204)
T 2r9g_A 96 VDLCLSPKSNSAYMALDAALA 116 (204)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 302
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.67 E-value=2.9e+02 Score=22.19 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-----HcCCCCCcHHHHHH
Q 048751 901 KALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQL-----KYGKMEPNENLFKA 958 (1004)
Q Consensus 901 ~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~p~~~~~~~ 958 (1004)
-|.++.++....|+.|+..++..++..|...+. + +.+++++. ...+..|+....+.
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~ 87 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNS 87 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 356667777777999988888999988887775 2 44444332 13466777665543
No 303
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.93 E-value=6.5e+02 Score=25.29 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHCCCC
Q 048751 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGN--LSEAEALFCMMEESRIS 393 (1004)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~A~~l~~~m~~~g~~ 393 (1004)
..+.++.-|...|+.++|...++++..-... .......+..++-+.++ .+...+++..+.+.|+-
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 3567888888899999999999888532112 23344455556655433 44566788888766544
No 304
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.21 E-value=3.3e+02 Score=24.30 Aligned_cols=51 Identities=6% Similarity=-0.219 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 048751 182 AQKWDELRLRWIEMAKNGVLP--TNNTYGMLVD-V-----YGKAGLIKEALLWIKHMKL 232 (1004)
Q Consensus 182 ~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~~ 232 (1004)
.|+|-+|-++|++..+....+ ....|-.||+ . ..+.|+..-|..++++...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 378888888888888766555 4455666776 2 2457999999999988765
Done!