BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048752
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 1 ISVIGDLKKLEILCLRGSDIKQLPIEV-GQLTWLTLLDLRECRKLEVIPPNVLSNLSHLE 59
IS + +L L L L G+ ++ LP V +LT L L L E +L+ +P V L++L
Sbjct: 78 ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLT 136
Query: 60 ELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDVNTLPRGLF 110
L + Q V L NLT L+LD + + +LP G+F
Sbjct: 137 YLYLYHNQLQSLPKGV----------FDKLTNLTRLDLDNNQLQSLPEGVF 177
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 1 ISVIGDLKKLEILCLRGSDIKQLPIEV-GQLTWLTLLDLRECRKLEVIPPNVLSNLSHLE 59
IS + +L L L L G+ ++ LP V +LT L L L E +L+ +P V L++L
Sbjct: 78 ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLT 136
Query: 60 ELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDVNTLPRGLF 110
L ++ Q V L NLT L+L + + +LP G+F
Sbjct: 137 YLNLAHNQLQSLPKGV----------FDKLTNLTELDLSYNQLQSLPEGVF 177
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 3 VIGDLKKLEILCLRGSDIKQLPIEV-GQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEEL 61
V L L+ L L + + LP+ V LT LT+LDL +L V+P V L HL+EL
Sbjct: 59 VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVHLKEL 117
Query: 62 CISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDVNTLPRGLF--LEKLGKYRI 119
+ + +E L +LT L LD + + ++P G F L L +
Sbjct: 118 FMCCNKLTELPRGIE-----------RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166
Query: 120 RIGDWYWESTNI 131
W E +I
Sbjct: 167 FGNPWDCECRDI 178
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 14/101 (13%)
Query: 11 EILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQK 70
+++C+R +++++P + T LL+L E ++++I N +L HLE L +SR +
Sbjct: 47 KVICVR-KNLREVPDGISTNT--RLLNLHE-NQIQIIKVNSFKHLRHLEILQLSRNHIRT 102
Query: 71 WEVEVEGAKNASLEELKHLPNLTSLELDIHDVNTLPRGLFL 111
E+ GA N L NL +LEL + + T+P G F+
Sbjct: 103 IEI---GAFNG-------LANLNTLELFDNRLTTIPNGAFV 133
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 38/222 (17%)
Query: 2 SVIGDLKKLEILCLRGSDIKQLPIEV-GQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEE 60
++ D KKL+ L+ + + LP + +LT L LL L + KL+ +P + L +LE
Sbjct: 34 NIPADTKKLD---LQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLET 89
Query: 61 LCISRRSFQKWEVEV--EGAKNASL----EELKHLP--------NLTSLELDIHDVNTLP 106
L ++ Q + V + A L +LK LP LT L L +++ +LP
Sbjct: 90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149
Query: 107 RGLF--LEKLGKYRI------RIGDWYWESTNIWRSEFRLRLNNKICLKDWLIVQLQGIE 158
+G+F L L + R+ R+ + ++ ++ L+L+N LK +E
Sbjct: 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT---LKLDNNQ-LKRVPEGAFDSLE 205
Query: 159 DLELRKLQE-------QDVIYFANELVKVGSSQLKFLRIHGC 193
L++ +LQE +IY A L K L + GC
Sbjct: 206 KLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGC 247
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.3 bits (72), Expect = 0.19, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 4 IGDLKKLEILCLRGSDIK-QLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELC 62
IG + L IL L +DI +P EVG L L +LDL KL+ P +S L+ L E+
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEID 707
Query: 63 ISRRSF 68
+S +
Sbjct: 708 LSNNNL 713
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.3 bits (72), Expect = 0.19, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 4 IGDLKKLEILCLRGSDIK-QLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELC 62
IG + L IL L +DI +P EVG L L +LDL KL+ P +S L+ L E+
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEID 710
Query: 63 ISRRSF 68
+S +
Sbjct: 711 LSNNNL 716
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 1 ISVIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEE 60
+ V G L L L L + ++ LP+ L LT+LD+ R L +P L L L+E
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQE 128
Query: 61 LCISRRSFQKW---------EVEVEGAKNASLEELKH-----LPNLTSLELDIHDVNTLP 106
L + + ++E N +L EL L NL +L L + + T+P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 107 RGLFLEKLGKYRIRIGD 123
+G F L + G+
Sbjct: 189 KGFFGSHLLPFAFLHGN 205
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 1 ISVIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEE 60
+ V G L L L L + ++ LP+ L LT+LD+ R L +P L L L+E
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQE 128
Query: 61 LCISRRSFQKW---------EVEVEGAKNASLEELKH-----LPNLTSLELDIHDVNTLP 106
L + + ++E N +L EL L NL +L L + + T+P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 107 RGLFLEKLGKYRIRIGD 123
+G F L + G+
Sbjct: 189 KGFFGSHLLPFAFLHGN 205
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 1 ISVIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEE 60
+ V G L L L L + ++ LP+ L LT+LD+ R L +P L L L+E
Sbjct: 71 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQE 129
Query: 61 LCISRRSFQKW---------EVEVEGAKNASLEELKH-----LPNLTSLELDIHDVNTLP 106
L + + ++E N +L EL L NL +L L + + T+P
Sbjct: 130 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 189
Query: 107 RGLFLEKLGKYRIRIGD 123
+G F L + G+
Sbjct: 190 KGFFGSHLLPFAFLHGN 206
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 1 ISVIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEE 60
+ V G L L L L + ++ LP+ L LT+LD+ R L +P L L L+E
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQE 128
Query: 61 LCISRRSFQKW---------EVEVEGAKNASLEELKH-----LPNLTSLELDIHDVNTLP 106
L + + ++E N +L EL L NL +L L + + T+P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 107 RGLFLEKLGKYRIRIGD 123
+G F L + G+
Sbjct: 189 KGFFGSHLLPFAFLHGN 205
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 15/137 (10%)
Query: 1 ISVIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEE 60
+ V G L L L L + ++ LP+ L LT+LD+ R L +P L L L+E
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQE 128
Query: 61 LCISRRSFQKW---------EVEVEGAKNASLEELKH-----LPNLTSLELDIHDVNTLP 106
L + + ++E N L EL L NL +L L + + T+P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 107 RGLFLEKLGKYRIRIGD 123
+G F L + G+
Sbjct: 189 KGFFGSHLLPFAFLHGN 205
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 1 ISVIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEE 60
+ V G L L L L + ++ LP+ L LT+LD+ R L +P L L L+E
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQE 128
Query: 61 LCISRRSFQKW---------EVEVEGAKNASLEELKH-----LPNLTSLELDIHDVNTLP 106
L + + ++E N +L EL L NL +L L + + T+P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 107 RGLFLEKLGKYRIRIGD 123
+G F L + G+
Sbjct: 189 KGFFGSHLLPFAFLHGN 205
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 15/137 (10%)
Query: 1 ISVIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEE 60
+ V G L L L L + ++ LP+ L LT+LD+ R L +P L L L+E
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQE 128
Query: 61 LCISRRSFQKW---------EVEVEGAKNASLEELKH-----LPNLTSLELDIHDVNTLP 106
L + + ++E N L EL L NL +L L + + T+P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 107 RGLFLEKLGKYRIRIGD 123
+G F L + G+
Sbjct: 189 KGFFGSHLLPFAFLHGN 205
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 2 SVIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPP 49
+ I +L+ L+ L +R S + L + L L LDLR C L PP
Sbjct: 200 ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 3 VIGDLKKLEILCLRG-SDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEEL 61
+ G L+ L L+ S++ LP+++ +LT L LDLR C L +P S ++ L
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP----SLIAQLPAN 303
Query: 62 CI 63
CI
Sbjct: 304 CI 305
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 15/137 (10%)
Query: 1 ISVIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEE 60
+ V G L L L L + ++ LP+ L LT+LD+ R L +P L L L+E
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQE 128
Query: 61 LCISRRSFQKW---------EVEVEGAKNASLEELKH-----LPNLTSLELDIHDVNTLP 106
L + + ++E N L EL L NL +L L + + T+P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 107 RGLFLEKLGKYRIRIGD 123
+G F L + G+
Sbjct: 189 KGFFGSHLLPFAFLHGN 205
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 15/137 (10%)
Query: 1 ISVIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEE 60
+ V G L L L L + ++ LP+ L LT+LD+ R L +P L L L+E
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQE 128
Query: 61 LCISRRSFQKW---------EVEVEGAKNASLEELKH-----LPNLTSLELDIHDVNTLP 106
L + + ++E N L EL L NL +L L + + T+P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 107 RGLFLEKLGKYRIRIGD 123
+G F L + G+
Sbjct: 189 KGFFGSHLLPFAFLHGN 205
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 15/137 (10%)
Query: 1 ISVIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEE 60
+ V G L L L L + ++ LP+ L LT+LD+ R L +P L L L+E
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQE 128
Query: 61 LCISRRSFQKW---------EVEVEGAKNASLEELKH-----LPNLTSLELDIHDVNTLP 106
L + + ++E N L EL L NL +L L + + T+P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 107 RGLFLEKLGKYRIRIGD 123
+G F L + G+
Sbjct: 189 KGFFGSHLLPFAFLHGN 205
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 28/146 (19%)
Query: 25 IEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLE 84
+ G T LDL E L+ +P V L+ L +L + Q V
Sbjct: 22 VPTGIPAQTTYLDL-ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV--------- 71
Query: 85 ELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIRIGDWYWESTNIWRSEFRLRLNNKI 144
L +LT L L + + +LP G+F +KL + + E L N
Sbjct: 72 -FNKLTSLTYLNLSTNQLQSLPNGVF-DKLTQLK----------------ELALNTNQLQ 113
Query: 145 CLKDWLIVQLQGIEDLELRKLQEQDV 170
L D + +L ++DL L + Q + V
Sbjct: 114 SLPDGVFDKLTQLKDLRLYQNQLKSV 139
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 17/72 (23%)
Query: 42 RKLEVIPPNVLS---NLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELD 98
R+L IP N+L+ NLSHLE +E + ++L+ NL S+E
Sbjct: 133 RRLTHIPANLLTDMRNLSHLE-----------LRANIEEMPSHLFDDLE---NLESIEFG 178
Query: 99 IHDVNTLPRGLF 110
+ + +PRG+F
Sbjct: 179 SNKLRQMPRGIF 190
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 25 IEVGQLTWLTL---LDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQK 70
I+ T LTL LDL + +L V+ P L HL L + R Q+
Sbjct: 70 IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQE 118
>pdb|3V1Z|A Chain A, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V1Z|B Chain B, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V20|A Chain A, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V20|B Chain B, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|A Chain A, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|B Chain B, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|C Chain C, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|D Chain D, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|E Chain E, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|F Chain F, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|G Chain G, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|H Chain H, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
Length = 293
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 91 NLTSLELDIHDVNTLPRGLFLEKLGKYRIRIGDWYWESTNIWRSEFRLRLNNKICLKDWL 150
NL LE + DV +GL + G + G W+ I +R++ L D+L
Sbjct: 46 NLDKLENYVKDV-VKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRE----LNDYL 100
Query: 151 IVQLQGIEDLELRKL 165
I+++ ++ + RK+
Sbjct: 101 IIKMPNVKTFDFRKI 115
>pdb|1KNV|A Chain A, Bse634i Restriction Endonuclease
pdb|1KNV|B Chain B, Bse634i Restriction Endonuclease
Length = 293
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 91 NLTSLELDIHDVNTLPRGLFLEKLGKYRIRIGDWYWESTNIWRSEFRLRLNNKICLKDWL 150
NL LE + DV +GL + G + G W+ I +R++ L D+L
Sbjct: 46 NLDKLENYVKDV-VKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRE----LNDYL 100
Query: 151 IVQLQGIEDLELRKL 165
I+++ ++ + RK+
Sbjct: 101 IIKMPNVKTFDFRKI 115
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 29/131 (22%)
Query: 15 LRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEEL--------CISRR 66
L G+ +P E+ LTL+DL ++ + SN++ L L CI R
Sbjct: 38 LDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR 96
Query: 67 SFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDVNTLPRGLF--LEKLGKYRIRIGDW 124
+F +G K+ L L L +D++ +P G F L L I
Sbjct: 97 TF-------DGLKSLRL-----------LSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Query: 125 YWESTNIWRSE 135
Y + W S+
Sbjct: 139 YCDCNMQWLSD 149
>pdb|4A1N|A Chain A, Human Mitochondrial Endo-Exonuclease
Length = 335
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 34 TLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLT 93
T D ++ +VI + ++ SHL ++ ++RRS E GA E + P LT
Sbjct: 164 TRGDGKKIVSYQVIGEDNVAVPSHLYKVILARRSSVSTEPLALGAFVVPNEAIGFQPQLT 223
Query: 94 SLELDIHDVNTLPRGLFLEKLGK 116
++ + D+ L +F L +
Sbjct: 224 EFQVSLQDLEKLSGLVFFPHLDR 246
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 16/95 (16%)
Query: 29 QLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKH 88
+LTWL L + +L+ + V +L+ L L ++ + V H
Sbjct: 60 KLTWLNL----DYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV----------FDH 105
Query: 89 LPNLTSLELDIHDVNTLPRGLF--LEKLGKYRIRI 121
L L L L + + +LP G+F L KL + R+
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 16/95 (16%)
Query: 29 QLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKH 88
+LTWL L + +L+ + V +L+ L L ++ + V H
Sbjct: 60 KLTWLNL----DYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV----------FDH 105
Query: 89 LPNLTSLELDIHDVNTLPRGLF--LEKLGKYRIRI 121
L L L L + + +LP G+F L KL + R+
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,143,499
Number of Sequences: 62578
Number of extensions: 240293
Number of successful extensions: 635
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 42
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)