Query 048752
Match_columns 205
No_of_seqs 115 out of 1526
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 12:47:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0617 Ras suppressor protein 99.7 4.1E-20 8.9E-25 131.0 -3.1 156 3-177 28-192 (264)
2 PLN00113 leucine-rich repeat r 99.7 7.2E-17 1.6E-21 145.8 9.5 63 6-69 138-201 (968)
3 PLN00113 leucine-rich repeat r 99.7 1.8E-16 4E-21 143.2 10.8 180 4-200 160-349 (968)
4 KOG4194 Membrane glycoprotein 99.6 7.2E-17 1.6E-21 132.9 1.4 178 7-203 148-336 (873)
5 KOG0617 Ras suppressor protein 99.6 1.2E-18 2.5E-23 123.6 -7.9 127 3-144 51-184 (264)
6 KOG0472 Leucine-rich repeat pr 99.6 1.5E-16 3.2E-21 125.9 2.2 184 6-201 250-545 (565)
7 KOG0472 Leucine-rich repeat pr 99.6 1.1E-17 2.3E-22 132.3 -4.7 190 4-203 87-294 (565)
8 KOG4194 Membrane glycoprotein 99.6 1.6E-16 3.4E-21 130.9 -1.0 191 3-201 216-433 (873)
9 PLN03210 Resistant to P. syrin 99.6 1.2E-14 2.5E-19 133.2 10.1 190 4-201 630-843 (1153)
10 PLN03210 Resistant to P. syrin 99.5 4.1E-14 8.8E-19 129.7 11.3 178 7-203 610-822 (1153)
11 KOG0444 Cytoskeletal regulator 99.5 4.6E-16 1E-20 129.4 -1.6 179 4-203 99-312 (1255)
12 KOG0444 Cytoskeletal regulator 99.5 3.4E-15 7.3E-20 124.4 -1.6 177 6-203 195-382 (1255)
13 KOG4237 Extracellular matrix p 99.4 2E-14 4.3E-19 113.6 0.0 185 11-203 70-341 (498)
14 PRK15370 E3 ubiquitin-protein 99.4 9.5E-13 2.1E-17 114.9 7.4 172 8-201 199-384 (754)
15 KOG0532 Leucine-rich repeat (L 99.3 2E-14 4.4E-19 118.1 -5.0 172 8-203 75-253 (722)
16 KOG0618 Serine/threonine phosp 99.3 3.5E-14 7.7E-19 122.2 -3.9 88 8-108 241-328 (1081)
17 PRK15370 E3 ubiquitin-protein 99.3 3.2E-12 7E-17 111.7 7.0 165 8-202 178-364 (754)
18 KOG0618 Serine/threonine phosp 99.3 3.3E-13 7.2E-18 116.3 0.4 182 4-195 260-488 (1081)
19 PRK15387 E3 ubiquitin-protein 99.2 2.5E-11 5.5E-16 106.0 8.7 36 9-48 223-258 (788)
20 PRK15387 E3 ubiquitin-protein 99.2 1.4E-11 3.1E-16 107.5 6.9 174 7-194 241-456 (788)
21 PF14580 LRR_9: Leucine-rich r 99.2 5.6E-12 1.2E-16 91.6 3.2 103 3-120 14-118 (175)
22 KOG4237 Extracellular matrix p 99.2 1.6E-12 3.4E-17 103.0 -2.7 90 17-120 55-145 (498)
23 PF14580 LRR_9: Leucine-rich r 99.1 1.7E-11 3.6E-16 89.1 2.3 94 2-106 35-129 (175)
24 PF13855 LRR_8: Leucine rich r 99.1 3.8E-11 8.3E-16 72.2 3.3 60 8-68 1-61 (61)
25 cd00116 LRR_RI Leucine-rich re 99.1 2.5E-10 5.4E-15 90.9 7.5 178 5-194 78-289 (319)
26 COG4886 Leucine-rich repeat (L 99.1 8.1E-11 1.8E-15 96.7 4.1 172 5-198 113-292 (394)
27 KOG4658 Apoptotic ATPase [Sign 99.1 7.6E-11 1.6E-15 104.7 4.1 86 4-101 567-653 (889)
28 KOG1259 Nischarin, modulator o 99.1 4.2E-11 9E-16 92.4 1.0 133 29-200 282-415 (490)
29 cd00116 LRR_RI Leucine-rich re 99.0 1.2E-09 2.6E-14 86.9 7.4 62 132-194 192-261 (319)
30 PF13855 LRR_8: Leucine rich r 99.0 2.4E-10 5.3E-15 68.7 2.4 61 31-102 1-61 (61)
31 KOG0532 Leucine-rich repeat (L 98.9 1E-10 2.3E-15 96.7 -1.4 169 5-193 95-270 (722)
32 KOG4658 Apoptotic ATPase [Sign 98.7 1.1E-08 2.4E-13 91.2 5.3 173 6-195 543-729 (889)
33 COG4886 Leucine-rich repeat (L 98.7 1.2E-08 2.7E-13 83.8 3.7 168 12-201 97-272 (394)
34 KOG3207 Beta-tubulin folding c 98.6 4.6E-09 1E-13 84.6 -0.5 174 5-194 143-337 (505)
35 PLN03150 hypothetical protein; 98.6 1.4E-07 2.9E-12 82.0 6.6 88 9-107 419-508 (623)
36 KOG3207 Beta-tubulin folding c 98.6 8.6E-09 1.9E-13 83.0 -0.8 173 6-194 119-312 (505)
37 PF12799 LRR_4: Leucine Rich r 98.6 8.1E-08 1.8E-12 53.5 3.4 41 8-49 1-41 (44)
38 KOG0531 Protein phosphatase 1, 98.5 5.6E-09 1.2E-13 86.4 -2.4 89 4-107 91-179 (414)
39 KOG0531 Protein phosphatase 1, 98.5 6.4E-09 1.4E-13 86.1 -3.0 121 6-143 70-196 (414)
40 PRK15386 type III secretion pr 98.5 5.7E-07 1.2E-11 73.4 7.5 129 6-165 50-187 (426)
41 PLN03150 hypothetical protein; 98.5 2.9E-07 6.4E-12 79.9 5.8 88 3-102 437-527 (623)
42 KOG1259 Nischarin, modulator o 98.4 4.6E-08 9.9E-13 75.9 0.1 118 7-141 283-407 (490)
43 KOG1909 Ran GTPase-activating 98.4 8.4E-07 1.8E-11 69.9 5.8 164 29-194 90-281 (382)
44 KOG1859 Leucine-rich repeat pr 98.4 8.2E-09 1.8E-13 88.0 -5.7 57 13-72 169-225 (1096)
45 PF12799 LRR_4: Leucine Rich r 98.3 4.7E-07 1E-11 50.4 2.9 41 31-73 1-41 (44)
46 KOG1909 Ran GTPase-activating 98.2 3.1E-07 6.8E-12 72.3 0.8 182 4-194 88-309 (382)
47 KOG2120 SCF ubiquitin ligase, 98.2 1.1E-07 2.3E-12 73.6 -2.0 171 9-194 186-374 (419)
48 KOG1644 U2-associated snRNP A' 98.2 2.7E-06 5.9E-11 62.4 5.1 85 9-104 43-127 (233)
49 KOG4579 Leucine-rich repeat (L 98.1 3.4E-07 7.3E-12 63.3 -0.8 97 10-120 29-128 (177)
50 KOG1859 Leucine-rich repeat pr 98.1 1E-07 2.3E-12 81.5 -4.9 99 6-119 185-283 (1096)
51 KOG4579 Leucine-rich repeat (L 98.0 1.3E-06 2.8E-11 60.4 -0.4 92 4-108 49-141 (177)
52 KOG3665 ZYG-1-like serine/thre 97.9 1.7E-05 3.6E-10 69.5 4.8 84 8-104 122-209 (699)
53 KOG1644 U2-associated snRNP A' 97.8 2.6E-05 5.6E-10 57.4 4.6 82 11-106 22-104 (233)
54 COG5238 RNA1 Ran GTPase-activa 97.8 0.00018 3.8E-09 55.6 8.1 179 7-194 29-253 (388)
55 KOG2982 Uncharacterized conser 97.8 9.4E-06 2E-10 63.1 1.0 82 6-101 69-157 (418)
56 KOG2123 Uncharacterized conser 97.6 6.8E-06 1.5E-10 63.3 -1.2 101 7-120 18-125 (388)
57 KOG3665 ZYG-1-like serine/thre 97.5 7.2E-05 1.6E-09 65.6 3.3 90 6-102 171-262 (699)
58 KOG2739 Leucine-rich acidic nu 97.5 2.6E-05 5.7E-10 59.3 0.3 87 7-104 42-130 (260)
59 PF00560 LRR_1: Leucine Rich R 97.4 9.8E-05 2.1E-09 34.5 1.3 21 9-29 1-21 (22)
60 PRK15386 type III secretion pr 97.3 0.00058 1.3E-08 56.1 5.6 50 9-67 73-123 (426)
61 KOG2120 SCF ubiquitin ligase, 97.2 5.5E-05 1.2E-09 59.0 -0.8 148 32-195 186-350 (419)
62 KOG2982 Uncharacterized conser 97.0 0.00072 1.6E-08 52.9 3.5 65 31-104 45-111 (418)
63 KOG2123 Uncharacterized conser 97.0 8.3E-05 1.8E-09 57.5 -1.9 86 4-96 37-123 (388)
64 PF13306 LRR_5: Leucine rich r 96.7 0.0037 8.1E-08 42.7 5.0 91 3-108 7-98 (129)
65 KOG2739 Leucine-rich acidic nu 96.7 0.00099 2.2E-08 50.9 2.1 88 2-99 59-152 (260)
66 PF13306 LRR_5: Leucine rich r 96.6 0.0036 7.8E-08 42.8 4.1 95 3-114 30-125 (129)
67 PF13504 LRR_7: Leucine rich r 96.5 0.0015 3.2E-08 28.3 1.3 16 9-24 2-17 (17)
68 PF13504 LRR_7: Leucine rich r 96.5 0.0016 3.4E-08 28.2 1.2 17 183-200 1-17 (17)
69 KOG4341 F-box protein containi 96.2 0.012 2.5E-07 48.3 5.3 40 28-67 291-331 (483)
70 PF00560 LRR_1: Leucine Rich R 95.9 0.0021 4.6E-08 29.8 0.1 18 32-50 1-18 (22)
71 COG5238 RNA1 Ran GTPase-activa 95.7 0.022 4.7E-07 44.4 4.6 165 25-194 86-283 (388)
72 KOG4341 F-box protein containi 95.3 0.014 2.9E-07 47.9 2.5 178 6-197 240-440 (483)
73 smart00370 LRR Leucine-rich re 95.3 0.013 2.8E-07 28.2 1.5 19 8-26 2-20 (26)
74 smart00369 LRR_TYP Leucine-ric 95.3 0.013 2.8E-07 28.2 1.5 19 8-26 2-20 (26)
75 KOG0473 Leucine-rich repeat pr 95.1 0.00097 2.1E-08 50.5 -4.1 85 4-101 38-122 (326)
76 smart00369 LRR_TYP Leucine-ric 95.0 0.023 5E-07 27.3 2.0 22 30-52 1-22 (26)
77 smart00370 LRR Leucine-rich re 95.0 0.023 5E-07 27.3 2.0 22 30-52 1-22 (26)
78 KOG1947 Leucine rich repeat pr 94.6 0.044 9.5E-07 46.0 4.1 68 27-101 184-254 (482)
79 KOG3864 Uncharacterized conser 93.4 0.024 5.2E-07 42.1 0.2 63 31-104 101-166 (221)
80 KOG3864 Uncharacterized conser 92.5 0.15 3.3E-06 37.9 3.2 60 131-194 123-187 (221)
81 smart00364 LRR_BAC Leucine-ric 92.0 0.11 2.4E-06 25.1 1.3 18 183-201 2-19 (26)
82 smart00367 LRR_CC Leucine-rich 91.4 0.13 2.9E-06 24.6 1.3 17 182-198 1-17 (26)
83 KOG0473 Leucine-rich repeat pr 90.9 0.011 2.3E-07 45.0 -4.2 66 3-70 60-125 (326)
84 KOG1947 Leucine rich repeat pr 90.4 0.36 7.9E-06 40.4 3.9 87 6-101 212-306 (482)
85 smart00365 LRR_SD22 Leucine-ri 88.4 0.34 7.3E-06 23.4 1.4 16 8-23 2-17 (26)
86 PF13516 LRR_6: Leucine Rich r 87.1 0.3 6.6E-06 22.7 0.8 13 8-20 2-14 (24)
87 smart00368 LRR_RI Leucine rich 77.9 1.5 3.3E-05 21.3 1.3 13 8-20 2-14 (28)
88 KOG4308 LRR-containing protein 56.9 0.77 1.7E-05 39.1 -3.9 89 7-103 203-303 (478)
89 KOG3763 mRNA export factor TAP 48.5 16 0.00034 31.7 2.5 61 7-69 217-283 (585)
90 KOG3763 mRNA export factor TAP 41.5 17 0.00037 31.5 1.7 64 27-103 214-283 (585)
91 TIGR00864 PCC polycystin catio 41.1 21 0.00045 37.0 2.4 28 14-41 1-29 (2740)
92 smart00446 LRRcap occurring C- 34.5 20 0.00044 17.2 0.7 14 51-64 8-21 (26)
93 TIGR00864 PCC polycystin catio 24.3 62 0.0013 33.9 2.5 32 37-69 1-32 (2740)
No 1
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=4.1e-20 Score=130.95 Aligned_cols=156 Identities=20% Similarity=0.319 Sum_probs=112.0
Q ss_pred cccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhcccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNAS 82 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~ 82 (205)
.+-.+.+.+.|.+++|+++.+|+.|..+.+|++|++++ ++++.+|.+ ++.|+.|++|+++.|++..+|.
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~-issl~klr~lnvgmnrl~~lpr--------- 96 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTS-ISSLPKLRILNVGMNRLNILPR--------- 96 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChh-hhhchhhhheecchhhhhcCcc---------
Confidence 34456778899999999999999999999999999999 899999998 9999999999999999988876
Q ss_pred HHhhcCCCCccEEEEEeeCCee--ccCCcCcccccceEEe-eccccccC-CC---CCCCcceEEecCc--ccchhhHHHh
Q 048752 83 LEELKHLPNLTSLELDIHDVNT--LPRGLFLEKLGKYRIR-IGDWYWES-TN---IWRSEFRLRLNNK--ICLKDWLIVQ 153 (205)
Q Consensus 83 ~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~~~-~~~~~~~~-~~---~~~~L~~L~l~~~--~~~~~~~~~~ 153 (205)
+++.++.|+.|++++|.+.. +|. .|-.++.|+-+ +++++++. |. .+.+|+.|.+..+ ...++.++ .
T Consensus 97 --gfgs~p~levldltynnl~e~~lpg--nff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig-~ 171 (264)
T KOG0617|consen 97 --GFGSFPALEVLDLTYNNLNENSLPG--NFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIG-D 171 (264)
T ss_pred --ccCCCchhhhhhccccccccccCCc--chhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHH-H
Confidence 99999999999999997654 444 34556666655 67777665 22 3333333333211 23344444 3
Q ss_pred cCCccEEEeccCchhhHHhHHHHh
Q 048752 154 LQGIEDLELRKLQEQDVIYFANEL 177 (205)
Q Consensus 154 ~~~L~~L~l~~~~~~~~~~~~~~l 177 (205)
+++|+.|.+.+|. ++-+|.++
T Consensus 172 lt~lrelhiqgnr---l~vlppel 192 (264)
T KOG0617|consen 172 LTRLRELHIQGNR---LTVLPPEL 192 (264)
T ss_pred HHHHHHHhcccce---eeecChhh
Confidence 4455555554443 34444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.69 E-value=7.2e-17 Score=145.84 Aligned_cols=63 Identities=29% Similarity=0.460 Sum_probs=32.5
Q ss_pred CcccceeEeecCCCcc-ccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccc
Q 048752 6 DLKKLEILCLRGSDIK-QLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQ 69 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 69 (205)
.+++|++|++++|.++ .+|..++.+++|++|++++|.....+|.. +.++++|++|++++|.+.
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~ 201 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLV 201 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCc
Confidence 3455555555555553 44545555555555555553333344443 555555555555555544
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.68 E-value=1.8e-16 Score=143.21 Aligned_cols=180 Identities=20% Similarity=0.220 Sum_probs=82.1
Q ss_pred ccCcccceeEeecCCCcc-ccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhcccccc
Q 048752 4 IGDLKKLEILCLRGSDIK-QLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNAS 82 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~ 82 (205)
++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. +..+++|++|++++|.+....+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p--------- 229 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEIP--------- 229 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCCcCC---------
Confidence 334455555555555442 34444555555555555553333334443 4455555555555544442222
Q ss_pred HHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC--CC---CCCCcceEEecCcc---cchhhHHHh
Q 048752 83 LEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES--TN---IWRSEFRLRLNNKI---CLKDWLIVQ 153 (205)
Q Consensus 83 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~--~~---~~~~L~~L~l~~~~---~~~~~~~~~ 153 (205)
..++.+++|+.|++++|.+....+. .+.+++.|+.+ +..+.+.+ |. .+++|++|+++.+. ..+.++. .
T Consensus 230 -~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~ 306 (968)
T PLN00113 230 -YEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI-Q 306 (968)
T ss_pred -hhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc-C
Confidence 2445555555555555544432222 23334444333 33332222 11 34455555553331 1223333 4
Q ss_pred cCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCC
Q 048752 154 LQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPP 200 (205)
Q Consensus 154 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp 200 (205)
+++|+.|++++|. ....+|..+ ..+++|+.|++++|.....+|
T Consensus 307 l~~L~~L~l~~n~--~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 307 LQNLEILHLFSNN--FTGKIPVAL--TSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred CCCCcEEECCCCc--cCCcCChhH--hcCCCCCEEECcCCCCcCcCC
Confidence 5566666666554 333444444 356666666666665333444
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.62 E-value=7.2e-17 Score=132.88 Aligned_cols=178 Identities=19% Similarity=0.213 Sum_probs=114.2
Q ss_pred cccceeEeecCCCccccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHh
Q 048752 7 LKKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEE 85 (205)
Q Consensus 7 l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~ 85 (205)
++.|+.|||+.|.|+++|.. +..=.++++|+|++ |+++.+..+-|..+.+|.+|.+++|+++.+|. ..
T Consensus 148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsrNrittLp~----------r~ 216 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSRNRITTLPQ----------RS 216 (873)
T ss_pred HhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeecccCcccccCH----------HH
Confidence 45556666666666555543 44445666666666 56666655556666666666666666666666 56
Q ss_pred hcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-CC----CCCCcceEEecCcc---cchhhHHHhcCC
Q 048752 86 LKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-TN----IWRSEFRLRLNNKI---CLKDWLIVQLQG 156 (205)
Q Consensus 86 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~~----~~~~L~~L~l~~~~---~~~~~~~~~~~~ 156 (205)
++++++|+.|++..|.+...... .|..|.+|+.+ +..+++.. .+ .+..+++|++..+. ...+|+- .+++
T Consensus 217 Fk~L~~L~~LdLnrN~irive~l-tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~ 294 (873)
T KOG4194|consen 217 FKRLPKLESLDLNRNRIRIVEGL-TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTS 294 (873)
T ss_pred hhhcchhhhhhccccceeeehhh-hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc-ccch
Confidence 66677777777777666554322 55556655555 44444433 11 57778888884442 2345555 5899
Q ss_pred ccEEEeccCchhhHHhH-HHHhhhcCCCCccEEeecCCCCCCCCCCCC
Q 048752 157 IEDLELRKLQEQDVIYF-ANELVKVGSSQLKFLRIHGCSDALNPPAES 203 (205)
Q Consensus 157 L~~L~l~~~~~~~~~~~-~~~l~~~~~~~L~~L~l~~~~~l~~lp~~~ 203 (205)
|++|+++.|. +..+ ++.+ ..+++|++|++++|. ++++++++
T Consensus 295 L~~L~lS~Na---I~rih~d~W--sftqkL~~LdLs~N~-i~~l~~~s 336 (873)
T KOG4194|consen 295 LEQLDLSYNA---IQRIHIDSW--SFTQKLKELDLSSNR-ITRLDEGS 336 (873)
T ss_pred hhhhccchhh---hheeecchh--hhcccceeEeccccc-cccCChhH
Confidence 9999999885 5554 5556 367899999999988 88888775
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=1.2e-18 Score=123.63 Aligned_cols=127 Identities=24% Similarity=0.350 Sum_probs=110.4
Q ss_pred cccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccch--hhhhhhcccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQK--WEVEVEGAKN 80 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~--~~~~i~~~~~ 80 (205)
.|+.+.+|++|++.+|.|+++|.+++.+++|+.|++.. +++..+|.+ |+.++.|++||+.+|.+.+ +|.
T Consensus 51 nia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprg-fgs~p~levldltynnl~e~~lpg------- 121 (264)
T KOG0617|consen 51 NIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRG-FGSFPALEVLDLTYNNLNENSLPG------- 121 (264)
T ss_pred cHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccc-cCCCchhhhhhccccccccccCCc-------
Confidence 56788999999999999999999999999999999999 889999999 9999999999999999875 444
Q ss_pred ccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-CC---CCCCcceEEecCcc
Q 048752 81 ASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-TN---IWRSEFRLRLNNKI 144 (205)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~~---~~~~L~~L~l~~~~ 144 (205)
.+-.|+.|+.|.+++|.++.+|+++ .+|+.|+++ ..++++.. |. .+..|+.|++.++.
T Consensus 122 ----nff~m~tlralyl~dndfe~lp~dv--g~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 122 ----NFFYMTTLRALYLGDNDFEILPPDV--GKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred ----chhHHHHHHHHHhcCCCcccCChhh--hhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence 7778889999999999999999987 999999999 77776655 44 56677888886553
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=1.5e-16 Score=125.91 Aligned_cols=184 Identities=23% Similarity=0.288 Sum_probs=127.8
Q ss_pred CcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhh----------
Q 048752 6 DLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEV---------- 75 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i---------- 75 (205)
.+.++.+||++.|+++++|+.++.+.+|.+||+++ +.+..+|.+ +++| +|+.|-+-+|.+..+..+|
T Consensus 250 ~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSN-N~is~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSN-NDISSLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLK 326 (565)
T ss_pred ccccceeeeccccccccCchHHHHhhhhhhhcccC-CccccCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence 57778888888888888888888888888888887 677888877 7777 7777777777655433200
Q ss_pred --------------------------------------------------------------------------------
Q 048752 76 -------------------------------------------------------------------------------- 75 (205)
Q Consensus 76 -------------------------------------------------------------------------------- 75 (205)
T Consensus 327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~ 406 (565)
T KOG0472|consen 327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKR 406 (565)
T ss_pred HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhh
Confidence
Q ss_pred -------------hc-cccccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-CCCCCCcceEE
Q 048752 76 -------------EG-AKNASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-TNIWRSEFRLR 139 (205)
Q Consensus 76 -------------~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~~~~~~L~~L~ 139 (205)
+. .....+.+++.+++|..|++++|.+.++|... ..+..|+.. +..+.|.. |..+-.++.+.
T Consensus 407 L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~--~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lE 484 (565)
T KOG0472|consen 407 LVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEM--GSLVRLQTLNLSFNRFRMLPECLYELQTLE 484 (565)
T ss_pred hHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhh--hhhhhhheecccccccccchHHHhhHHHHH
Confidence 00 23444566777888888888888888887764 555556665 55555655 54333344443
Q ss_pred e---cCcc---cchhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCC
Q 048752 140 L---NNKI---CLKDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPA 201 (205)
Q Consensus 140 l---~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~ 201 (205)
+ +.+. .-+..+. .+.+|.+|++.+|. +..+|..+ ++|.+|++|.+++|+ ++-++.
T Consensus 485 tllas~nqi~~vd~~~l~-nm~nL~tLDL~nNd---lq~IPp~L--gnmtnL~hLeL~gNp-fr~Pr~ 545 (565)
T KOG0472|consen 485 TLLASNNQIGSVDPSGLK-NMRNLTTLDLQNND---LQQIPPIL--GNMTNLRHLELDGNP-FRQPRH 545 (565)
T ss_pred HHHhccccccccChHHhh-hhhhcceeccCCCc---hhhCChhh--ccccceeEEEecCCc-cCCCHH
Confidence 3 3221 1123355 68899999998885 89999999 799999999999999 664443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=1.1e-17 Score=132.28 Aligned_cols=190 Identities=19% Similarity=0.226 Sum_probs=125.4
Q ss_pred ccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhc------
Q 048752 4 IGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEG------ 77 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~------ 77 (205)
|+++..+..|+.+++++..+|.+++.+..|+.++.+. +....+|++ ++.+..+..++...|+++.+|+.+..
T Consensus 87 ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~-i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~ 164 (565)
T KOG0472|consen 87 IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-NELKELPDS-IGRLLDLEDLDATNNQISSLPEDMVNLSKLSK 164 (565)
T ss_pred HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc-cceeecCch-HHHHhhhhhhhccccccccCchHHHHHHHHHH
Confidence 4455555556666666666666555555555555555 445555554 55555555555555555555542221
Q ss_pred ------cccccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-CC--CCCCcceEEecCcc--c
Q 048752 78 ------AKNASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-TN--IWRSEFRLRLNNKI--C 145 (205)
Q Consensus 78 ------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~~--~~~~L~~L~l~~~~--~ 145 (205)
...+.+++.-.|+.|+.|+...|-++.+|+.+ ..+.+|... +..+.+.. |+ +++.|++|+.+.+- .
T Consensus 165 l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~l--g~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~ 242 (565)
T KOG0472|consen 165 LDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPEL--GGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEM 242 (565)
T ss_pred hhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhh--cchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHh
Confidence 11111223334888888888888888888865 677777666 66666655 43 77788888885542 3
Q ss_pred chhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCCCC
Q 048752 146 LKDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPAES 203 (205)
Q Consensus 146 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~~ 203 (205)
.+......+..+..||+++|+ ++++|+++ +-+.+|.+||+++|. ++++|...
T Consensus 243 lpae~~~~L~~l~vLDLRdNk---lke~Pde~--clLrsL~rLDlSNN~-is~Lp~sL 294 (565)
T KOG0472|consen 243 LPAEHLKHLNSLLVLDLRDNK---LKEVPDEI--CLLRSLERLDLSNND-ISSLPYSL 294 (565)
T ss_pred hHHHHhcccccceeeeccccc---cccCchHH--HHhhhhhhhcccCCc-cccCCccc
Confidence 455566578899999999996 89999998 688899999999988 88888653
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.58 E-value=1.6e-16 Score=130.91 Aligned_cols=191 Identities=17% Similarity=0.193 Sum_probs=113.6
Q ss_pred cccCcccceeEeecCCCccccc-hhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhh-hhc---
Q 048752 3 VIGDLKKLEILCLRGSDIKQLP-IEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVE-VEG--- 77 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~-i~~--- 77 (205)
.|.+|++|+.|+|..|+|+.+- ..|..|++|+.|.|.. |.+..+.+++|..|.++++|++..|+++.+... +.|
T Consensus 216 ~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~ 294 (873)
T KOG4194|consen 216 SFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS 294 (873)
T ss_pred HhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhh-cCcccccCcceeeecccceeecccchhhhhhcccccccch
Confidence 3455667777777766665442 2255555555555555 444555554444444555555544444443330 000
Q ss_pred --------cccc--cHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-C----CCCCCcceEEec
Q 048752 78 --------AKNA--SLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-T----NIWRSEFRLRLN 141 (205)
Q Consensus 78 --------~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~----~~~~~L~~L~l~ 141 (205)
+..+ .+......++|++|+++.|.++.+++. +|.-|..|+.+ ++.+.+.. . ..+++|+.|++.
T Consensus 295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~-sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG-SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred hhhhccchhhhheeecchhhhcccceeEeccccccccCChh-HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence 0000 004566677777777777777777776 66666666666 55555444 1 267788888885
Q ss_pred Ccccc---hhh---HHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCC
Q 048752 142 NKICL---KDW---LIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPA 201 (205)
Q Consensus 142 ~~~~~---~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~ 201 (205)
.+... +.. +. .++.|+.|.+.+|+ ++.+|...+ .++++|+.|++.+|. +.++..
T Consensus 374 ~N~ls~~IEDaa~~f~-gl~~LrkL~l~gNq---lk~I~krAf-sgl~~LE~LdL~~Na-iaSIq~ 433 (873)
T KOG4194|consen 374 SNELSWCIEDAAVAFN-GLPSLRKLRLTGNQ---LKSIPKRAF-SGLEALEHLDLGDNA-IASIQP 433 (873)
T ss_pred CCeEEEEEecchhhhc-cchhhhheeecCce---eeecchhhh-ccCcccceecCCCCc-ceeecc
Confidence 44221 211 22 47889999998885 788877654 789999999999988 666543
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.57 E-value=1.2e-14 Score=133.19 Aligned_cols=190 Identities=25% Similarity=0.353 Sum_probs=110.1
Q ss_pred ccCcccceeEeecCC-CccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCc-cchhhhhhhcc---
Q 048752 4 IGDLKKLEILCLRGS-DIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRS-FQKWEVEVEGA--- 78 (205)
Q Consensus 4 i~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~-~~~~~~~i~~~--- 78 (205)
+..+++|++|+++++ .++.+|. ++.+++|++|++++|..+..+|.. +..+++|++|++++|. +..+|..+.-.
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~ 707 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPTGINLKSLY 707 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCCcCCCCCCC
Confidence 345667777777765 4556664 666677777777776666667765 6677777777776653 33444311000
Q ss_pred ----cc-ccHHhh-cCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccc----cC-----CCCCCCcceEEecC
Q 048752 79 ----KN-ASLEEL-KHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYW----ES-----TNIWRSEFRLRLNN 142 (205)
Q Consensus 79 ----~~-~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~----~~-----~~~~~~L~~L~l~~ 142 (205)
.+ .....+ ...++|+.|++++|.+..+|..+.+.+|..|.+. .....+ .. ....++|+.|++..
T Consensus 708 ~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~ 787 (1153)
T PLN03210 708 RLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD 787 (1153)
T ss_pred EEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCC
Confidence 00 000000 1124556666666666666654444444444433 111111 00 01345788888854
Q ss_pred cc---cchhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCC
Q 048752 143 KI---CLKDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPA 201 (205)
Q Consensus 143 ~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~ 201 (205)
+. ..+.+++ .+++|+.|++++|. .++.+|..+ .+++|+.|++++|..++.+|.
T Consensus 788 n~~l~~lP~si~-~L~~L~~L~Ls~C~--~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 788 IPSLVELPSSIQ-NLHKLEHLEIENCI--NLETLPTGI---NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred CCCccccChhhh-CCCCCCEEECCCCC--CcCeeCCCC---CccccCEEECCCCCccccccc
Confidence 42 2455566 68889999998888 778888766 688888888888887777664
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.54 E-value=4.1e-14 Score=129.65 Aligned_cols=178 Identities=23% Similarity=0.317 Sum_probs=122.9
Q ss_pred cccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCc-cchhhhhhhccccccHHh
Q 048752 7 LKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRS-FQKWEVEVEGAKNASLEE 85 (205)
Q Consensus 7 l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~-~~~~~~~i~~~~~~~~~~ 85 (205)
..+|+.|+++++.++.+|..+..+++|++|++++|+.++.+|. +..+++|++|++++|. +..+|. .
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~-----------s 676 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPS-----------S 676 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccch-----------h
Confidence 4677788888888888887788888888888888777777875 7788888888887765 444554 7
Q ss_pred hcCCCCccEEEEEee-CCeeccCCcCcccccceEEeeccc-cccC-CCCCCCcceEEecCcc--cch-------------
Q 048752 86 LKHLPNLTSLELDIH-DVNTLPRGLFLEKLGKYRIRIGDW-YWES-TNIWRSEFRLRLNNKI--CLK------------- 147 (205)
Q Consensus 86 l~~l~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~~~~~~~-~~~~-~~~~~~L~~L~l~~~~--~~~------------- 147 (205)
++.+++|+.|++++| .++.+|..+.+.+|+.|.+ .+. .+.. |....+|++|++..+. ..+
T Consensus 677 i~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~L--sgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l 754 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNL--SGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELIL 754 (1153)
T ss_pred hhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeC--CCCCCccccccccCCcCeeecCCCccccccccccccccccccc
Confidence 788889999999876 6777776543333333332 221 1222 3333445555552221 000
Q ss_pred ----------------hhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCCCC
Q 048752 148 ----------------DWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPAES 203 (205)
Q Consensus 148 ----------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~~ 203 (205)
......+++|+.|++++|. .+..+|..+ .++++|+.|++++|..++.+|.+.
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~--~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP--SLVELPSSI--QNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCC--CccccChhh--hCCCCCCEEECCCCCCcCeeCCCC
Confidence 0111134689999999998 788899988 699999999999999999998764
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.54 E-value=4.6e-16 Score=129.44 Aligned_cols=179 Identities=21% Similarity=0.265 Sum_probs=110.2
Q ss_pred ccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccH
Q 048752 4 IGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASL 83 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~ 83 (205)
|-++..|.+|||++|.++++|..+..-+++-+|+|+. +.+.++|..++-+|.-|-.||++.|++..+|+
T Consensus 99 iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP---------- 167 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNRLEMLPP---------- 167 (1255)
T ss_pred hcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccchhhhcCH----------
Confidence 4566777777777777777777777777777777777 66777777767777777777777777777777
Q ss_pred HhhcCCCCccEEEEEeeCCe--------------------------eccCCcCcccccceEEe-eccccccC-CC---CC
Q 048752 84 EELKHLPNLTSLELDIHDVN--------------------------TLPRGLFLEKLGKYRIR-IGDWYWES-TN---IW 132 (205)
Q Consensus 84 ~~l~~l~~L~~L~l~~~~~~--------------------------~~~~~~~~~~L~~L~~~-~~~~~~~~-~~---~~ 132 (205)
.+..+..|++|.+++|.+. .+|.++ ..+..|.-. +..+++.. |+ .+
T Consensus 168 -Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl--d~l~NL~dvDlS~N~Lp~vPecly~l 244 (1255)
T KOG0444|consen 168 -QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL--DDLHNLRDVDLSENNLPIVPECLYKL 244 (1255)
T ss_pred -HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch--hhhhhhhhccccccCCCcchHHHhhh
Confidence 4445555555555554332 233222 112221111 22333333 32 55
Q ss_pred CCcceEEecCcccchh--hHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCC--CCCCCCC
Q 048752 133 RSEFRLRLNNKICLKD--WLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDA--LNPPAES 203 (205)
Q Consensus 133 ~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l--~~lp~~~ 203 (205)
.+|+.|.++.+....- ..+ .-.++++|.++.|+ ++.+|+.+ +.++.|+.|++.+|. + .-+|.|+
T Consensus 245 ~~LrrLNLS~N~iteL~~~~~-~W~~lEtLNlSrNQ---Lt~LP~av--cKL~kL~kLy~n~Nk-L~FeGiPSGI 312 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITELNMTEG-EWENLETLNLSRNQ---LTVLPDAV--CKLTKLTKLYANNNK-LTFEGIPSGI 312 (1255)
T ss_pred hhhheeccCcCceeeeeccHH-HHhhhhhhccccch---hccchHHH--hhhHHHHHHHhccCc-ccccCCccch
Confidence 6667777755533221 122 35677888888774 78888888 688888888888875 3 3455554
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.47 E-value=3.4e-15 Score=124.38 Aligned_cols=177 Identities=20% Similarity=0.304 Sum_probs=114.7
Q ss_pred CcccceeEeecCC--CccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccH
Q 048752 6 DLKKLEILCLRGS--DIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASL 83 (205)
Q Consensus 6 ~l~~L~~L~l~~~--~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~ 83 (205)
.+++|++|.++++ .+..+|.++..|.+|+.+|++. +.+..+|+- +.++++|+.|++++|+++++..
T Consensus 195 smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPec-ly~l~~LrrLNLS~N~iteL~~---------- 262 (1255)
T KOG0444|consen 195 SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPEC-LYKLRNLRRLNLSGNKITELNM---------- 262 (1255)
T ss_pred cchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHH-HhhhhhhheeccCcCceeeeec----------
Confidence 4445555555554 2235566666666666666665 566666665 6667777777777777666555
Q ss_pred HhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-ecc--ccccC-CCCCCCc---ceEEecCc-cc-chhhHHHhc
Q 048752 84 EELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGD--WYWES-TNIWRSE---FRLRLNNK-IC-LKDWLIVQL 154 (205)
Q Consensus 84 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~--~~~~~-~~~~~~L---~~L~l~~~-~~-~~~~~~~~~ 154 (205)
..+...+|++|+++.|.++.+|..+ .+|++|+-+ ..+ ..+++ |.+...| +.+...++ .. .|.++. .+
T Consensus 263 -~~~~W~~lEtLNlSrNQLt~LP~av--cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglc-RC 338 (1255)
T KOG0444|consen 263 -TEGEWENLETLNLSRNQLTVLPDAV--CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLC-RC 338 (1255)
T ss_pred -cHHHHhhhhhhccccchhccchHHH--hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhh-hh
Confidence 4556667777777778777777655 555555444 333 34555 5544444 44444333 22 344454 57
Q ss_pred CCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCCCC
Q 048752 155 QGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPAES 203 (205)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~~ 203 (205)
.+|+.|.+++|. +..+|..+ .-++.|+.|++..|+++..+|...
T Consensus 339 ~kL~kL~L~~Nr---LiTLPeaI--HlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 339 VKLQKLKLDHNR---LITLPEAI--HLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred HHHHHhcccccc---eeechhhh--hhcCCcceeeccCCcCccCCCCcc
Confidence 889999998875 77788888 477999999999999998887653
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.42 E-value=2e-14 Score=113.61 Aligned_cols=185 Identities=18% Similarity=0.240 Sum_probs=101.2
Q ss_pred eeEeecCCCccccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCC-Cccchhhhhhhc-----------
Q 048752 11 EILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISR-RSFQKWEVEVEG----------- 77 (205)
Q Consensus 11 ~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~-~~~~~~~~~i~~----------- 77 (205)
..++|..|.|+++|+. |+.+++|+.|||+. |.++.+.++.|+.++++..|.+-+ |++++++...-+
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 3455555555555544 55555555555555 455555555555555554444333 555555542211
Q ss_pred --cccccH-HhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-ecccc----------------------------
Q 048752 78 --AKNASL-EELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWY---------------------------- 125 (205)
Q Consensus 78 --~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~---------------------------- 125 (205)
...+.. +.+..++++..|.+++|.+..+++. .+..+..++-. ...+.
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~-tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKG-TFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccc-cccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 111111 5677888888888888887776664 33333332211 00000
Q ss_pred -----------------------c----------cC--CC----CCCCcceEEecCccc---chhhHHHhcCCccEEEec
Q 048752 126 -----------------------W----------ES--TN----IWRSEFRLRLNNKIC---LKDWLIVQLQGIEDLELR 163 (205)
Q Consensus 126 -----------------------~----------~~--~~----~~~~L~~L~l~~~~~---~~~~~~~~~~~L~~L~l~ 163 (205)
+ .. |. .+++|++++++++.. .+.|+. ....++.|.+.
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe-~~a~l~eL~L~ 306 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE-GAAELQELYLT 306 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc-chhhhhhhhcC
Confidence 0 00 11 455666666654432 234444 45666666666
Q ss_pred cCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCCCC
Q 048752 164 KLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPAES 203 (205)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~~ 203 (205)
.|+ +..+-..++ +++..|+.|++.+|. |+.+.++.
T Consensus 307 ~N~---l~~v~~~~f-~~ls~L~tL~L~~N~-it~~~~~a 341 (498)
T KOG4237|consen 307 RNK---LEFVSSGMF-QGLSGLKTLSLYDNQ-ITTVAPGA 341 (498)
T ss_pred cch---HHHHHHHhh-hccccceeeeecCCe-eEEEeccc
Confidence 664 566665555 888999999999988 77665543
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.38 E-value=9.5e-13 Score=114.91 Aligned_cols=172 Identities=17% Similarity=0.211 Sum_probs=84.9
Q ss_pred ccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhc---------c
Q 048752 8 KKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEG---------A 78 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~---------~ 78 (205)
.+++.|++++|+++.+|..+. .+|++|++++ +.++.+|.. +. .+|+.|++++|.+..+|..+.. +
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~-N~LtsLP~~-l~--~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N 272 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANS-NQLTSIPAT-LP--DTIQEMELSINRITELPERLPSALQSLDLFHN 272 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCC-CccccCChh-hh--ccccEEECcCCccCcCChhHhCCCCEEECcCC
Confidence 357778888888877776543 4777777777 456667764 22 3566666666666665542110 0
Q ss_pred -ccccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEeeccccccC-CC-CCCCcceEEecCccc--chhhHHHh
Q 048752 79 -KNASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIRIGDWYWES-TN-IWRSEFRLRLNNKIC--LKDWLIVQ 153 (205)
Q Consensus 79 -~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~--~~~~~~~~ 153 (205)
....+..+ .++|+.|++++|.++.+|..+ ...+..|. +.++.+.. |. ..++|++|+++.+.. .+.. .
T Consensus 273 ~L~~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l-p~sL~~L~--Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~---l 344 (754)
T PRK15370 273 KISCLPENL--PEELRYLSVYDNSIRTLPAHL-PSGITHLN--VQSNSLTALPETLPPGLKTLEAGENALTSLPAS---L 344 (754)
T ss_pred ccCcccccc--CCCCcEEECCCCccccCcccc-hhhHHHHH--hcCCccccCCccccccceeccccCCccccCChh---h
Confidence 00000011 134556666666555554331 11122211 22222222 21 234555555533311 1111 2
Q ss_pred cCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCC
Q 048752 154 LQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPA 201 (205)
Q Consensus 154 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~ 201 (205)
.++|+.|++++|+ ++.+|..+ .++|++|++++|. ++.+|+
T Consensus 345 ~~sL~~L~Ls~N~---L~~LP~~l----p~~L~~LdLs~N~-Lt~LP~ 384 (754)
T PRK15370 345 PPELQVLDVSKNQ---ITVLPETL----PPTITTLDVSRNA-LTNLPE 384 (754)
T ss_pred cCcccEEECCCCC---CCcCChhh----cCCcCEEECCCCc-CCCCCH
Confidence 2466666666664 44555444 3466666666665 555554
No 15
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.34 E-value=2e-14 Score=118.14 Aligned_cols=172 Identities=20% Similarity=0.215 Sum_probs=118.9
Q ss_pred ccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhc
Q 048752 8 KKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELK 87 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~ 87 (205)
..-...|++.|++..+|..++.+..|+.+.++. +.+..+|+. +.++..|+.++++.|++..+|. .+.
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~-----------~lC 141 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYH-NCIRTIPEA-ICNLEALTFLDLSSNQLSHLPD-----------GLC 141 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHh-ccceecchh-hhhhhHHHHhhhccchhhcCCh-----------hhh
Confidence 334566777888888887777778888877777 677777776 7778888888888888877776 555
Q ss_pred CCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-CC---CCCCcceEEecCc--ccchhhHHHhcCCccEE
Q 048752 88 HLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-TN---IWRSEFRLRLNNK--ICLKDWLIVQLQGIEDL 160 (205)
Q Consensus 88 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~~---~~~~L~~L~l~~~--~~~~~~~~~~~~~L~~L 160 (205)
.|+ |+.|.+++|+++.+|+.+ ..+.+|... ...+.+.. |. .+.+|+.|.+..+ ...+.... --.|..|
T Consensus 142 ~lp-Lkvli~sNNkl~~lp~~i--g~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~--~LpLi~l 216 (722)
T KOG0532|consen 142 DLP-LKVLIVSNNKLTSLPEEI--GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC--SLPLIRL 216 (722)
T ss_pred cCc-ceeEEEecCccccCCccc--ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh--CCceeee
Confidence 554 777777778887777765 334444333 34443333 32 3444454555222 23344444 2367899
Q ss_pred EeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCCCC
Q 048752 161 ELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPAES 203 (205)
Q Consensus 161 ~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~~ 203 (205)
|+++|+ +..+|..+ +.|.+|++|-+.+|| ++++|+++
T Consensus 217 DfScNk---is~iPv~f--r~m~~Lq~l~LenNP-LqSPPAqI 253 (722)
T KOG0532|consen 217 DFSCNK---ISYLPVDF--RKMRHLQVLQLENNP-LQSPPAQI 253 (722)
T ss_pred ecccCc---eeecchhh--hhhhhheeeeeccCC-CCCChHHH
Confidence 998886 88899888 799999999999999 99998764
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.34 E-value=3.5e-14 Score=122.18 Aligned_cols=88 Identities=22% Similarity=0.354 Sum_probs=71.5
Q ss_pred ccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhc
Q 048752 8 KKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELK 87 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~ 87 (205)
.+|++++++.++++.+|.+++.+.+|+.++... +.+..+|.. +..+.+|+.|.+.+|.+..+|+ ..+
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~-N~l~~lp~r-i~~~~~L~~l~~~~nel~yip~-----------~le 307 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANH-NRLVALPLR-ISRITSLVSLSAAYNELEYIPP-----------FLE 307 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccc-hhHHhhHHH-HhhhhhHHHHHhhhhhhhhCCC-----------ccc
Confidence 467788888888888887788888888888887 667778877 7777788888888888887777 778
Q ss_pred CCCCccEEEEEeeCCeeccCC
Q 048752 88 HLPNLTSLELDIHDVNTLPRG 108 (205)
Q Consensus 88 ~l~~L~~L~l~~~~~~~~~~~ 108 (205)
++..|++|++..|.+..+|+.
T Consensus 308 ~~~sL~tLdL~~N~L~~lp~~ 328 (1081)
T KOG0618|consen 308 GLKSLRTLDLQSNNLPSLPDN 328 (1081)
T ss_pred ccceeeeeeehhccccccchH
Confidence 889999999999999888774
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=3.2e-12 Score=111.65 Aligned_cols=165 Identities=18% Similarity=0.223 Sum_probs=103.1
Q ss_pred ccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhc
Q 048752 8 KKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELK 87 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~ 87 (205)
.+...|++++++++++|..+. ++|+.|++++ +.++.+|.. +. .+|++|++++|+++.+|..+ .
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~-N~LtsLP~~-l~--~nL~~L~Ls~N~LtsLP~~l-----------~ 240 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDN-NELKSLPEN-LQ--GNIKTLYANSNQLTSIPATL-----------P 240 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecC-CCCCcCChh-hc--cCCCEEECCCCccccCChhh-----------h
Confidence 456889999999999998765 5899999999 688999987 32 58999999999999887621 1
Q ss_pred CCCCccEEEEEeeCCeeccCCcCcccccce------------------EEe-eccccccC-CCC-CCCcceEEecCcccc
Q 048752 88 HLPNLTSLELDIHDVNTLPRGLFLEKLGKY------------------RIR-IGDWYWES-TNI-WRSEFRLRLNNKICL 146 (205)
Q Consensus 88 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L------------------~~~-~~~~~~~~-~~~-~~~L~~L~l~~~~~~ 146 (205)
.+|+.|++++|.+..+|..+ ..+|+.| +.+ +.++.+.. |.. .++|+.|+++.+...
T Consensus 241 --~~L~~L~Ls~N~L~~LP~~l-~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 241 --DTIQEMELSINRITELPERL-PSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT 317 (754)
T ss_pred --ccccEEECcCCccCcCChhH-hCCCCEEECcCCccCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccc
Confidence 23445555555544444331 1222222 222 22222322 211 123444444322111
Q ss_pred hhhHH-HhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCCC
Q 048752 147 KDWLI-VQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPAE 202 (205)
Q Consensus 147 ~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~ 202 (205)
. +. ..+++|+.|++++|. ++.+|..+ +++|+.|++++|. ++.+|..
T Consensus 318 ~--LP~~l~~sL~~L~Ls~N~---Lt~LP~~l----~~sL~~L~Ls~N~-L~~LP~~ 364 (754)
T PRK15370 318 A--LPETLPPGLKTLEAGENA---LTSLPASL----PPELQVLDVSKNQ-ITVLPET 364 (754)
T ss_pred c--CCccccccceeccccCCc---cccCChhh----cCcccEEECCCCC-CCcCChh
Confidence 0 00 124678888888885 66777665 4789999999997 7777753
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.31 E-value=3.3e-13 Score=116.33 Aligned_cols=182 Identities=23% Similarity=0.297 Sum_probs=135.0
Q ss_pred ccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhh--------
Q 048752 4 IGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEV-------- 75 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i-------- 75 (205)
++.+.+|+.++..+|.++.+|..+....+|+.|.... +.++.+|+. .+.+.+|++|++..|.+..+|+..
T Consensus 260 i~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~-nel~yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l 337 (1081)
T KOG0618|consen 260 IGACANLEALNANHNRLVALPLRISRITSLVSLSAAY-NELEYIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASL 337 (1081)
T ss_pred HHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhh-hhhhhCCCc-ccccceeeeeeehhccccccchHHHhhhhHHH
Confidence 5667888888888888888888888888888888887 678888875 666888888888888777776611
Q ss_pred -----------------------------hc--cccccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-ecc
Q 048752 76 -----------------------------EG--AKNASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGD 123 (205)
Q Consensus 76 -----------------------------~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~ 123 (205)
.+ -...-...+.++.+|+.|++++|.+..+|.. .+.++..|+.+ +.+
T Consensus 338 ~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas-~~~kle~LeeL~LSG 416 (1081)
T KOG0618|consen 338 NTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS-KLRKLEELEELNLSG 416 (1081)
T ss_pred HHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH-HHhchHHhHHHhccc
Confidence 00 1122234567788999999999999999988 78889888888 777
Q ss_pred ccccC-CC---CCCCcceEEecCc-ccchhhHHHhcCCccEEEeccCchhhHHhH--HHHhhhcCCCCccEEeecCCCC
Q 048752 124 WYWES-TN---IWRSEFRLRLNNK-ICLKDWLIVQLQGIEDLELRKLQEQDVIYF--ANELVKVGSSQLKFLRIHGCSD 195 (205)
Q Consensus 124 ~~~~~-~~---~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~~~~~~L~~L~l~~~~~ 195 (205)
+.+.. |+ .+..|++|..+.+ ...-+.+. .++.|+.+|++.|. ++.+ |... --|+||+|++++|..
T Consensus 417 NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~-~l~qL~~lDlS~N~---L~~~~l~~~~---p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 417 NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELA-QLPQLKVLDLSCNN---LSEVTLPEAL---PSPNLKYLDLSGNTR 488 (1081)
T ss_pred chhhhhhHHHHhhhhhHHHhhcCCceeechhhh-hcCcceEEecccch---hhhhhhhhhC---CCcccceeeccCCcc
Confidence 77666 43 7778888888554 33333555 58999999999885 5554 3232 227999999999974
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.25 E-value=2.5e-11 Score=105.95 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=18.7
Q ss_pred cceeEeecCCCccccchhhccccccceEeccCCCCCcccC
Q 048752 9 KLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIP 48 (205)
Q Consensus 9 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp 48 (205)
+|+.|++++|+++.+|. .+++|++|++++ |.++.+|
T Consensus 223 ~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~-N~LtsLP 258 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA---LPPELRTLEVSG-NQLTSLP 258 (788)
T ss_pred CCCEEEccCCcCCCCCC---CCCCCcEEEecC-CccCccc
Confidence 45555555555555553 234555555555 3444444
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.24 E-value=1.4e-11 Score=107.51 Aligned_cols=174 Identities=19% Similarity=0.175 Sum_probs=98.4
Q ss_pred cccceeEeecCCCccccchhhcc-----------------ccccceEeccCCCCCcccChHHhhcccccceeecCCCccc
Q 048752 7 LKKLEILCLRGSDIKQLPIEVGQ-----------------LTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQ 69 (205)
Q Consensus 7 l~~L~~L~l~~~~i~~lp~~i~~-----------------l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 69 (205)
.++|++|++++|+++.+|..... +.+|+.|++++ +.++.+|.. .++|++|++++|+++
T Consensus 241 p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~-N~Lt~LP~~----p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFG-NQLTSLPVL----PPGLQELSVSDNQLA 315 (788)
T ss_pred CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcC-Ccccccccc----ccccceeECCCCccc
Confidence 47788888888877776653221 13455666666 456666642 367888888888888
Q ss_pred hhhhhhhc-----cccccHHhhcCC-CCccEEEEEeeCCeeccCCcCcccccceEE-----------------e-ecccc
Q 048752 70 KWEVEVEG-----AKNASLEELKHL-PNLTSLELDIHDVNTLPRGLFLEKLGKYRI-----------------R-IGDWY 125 (205)
Q Consensus 70 ~~~~~i~~-----~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~-----------------~-~~~~~ 125 (205)
.+|..... -..+.+..+..+ .+|+.|++++|+++.+|... .+++.|.+ + +.++.
T Consensus 316 ~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp--~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~ 393 (788)
T PRK15387 316 SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLP--SELYKLWAYNNRLTSLPALPSGLKELIVSGNR 393 (788)
T ss_pred cCCCCcccccccccccCccccccccccccceEecCCCccCCCCCCC--cccceehhhccccccCcccccccceEEecCCc
Confidence 76541110 000111112112 36888888888888776532 33333221 1 22333
Q ss_pred ccC-CCCCCCcceEEecCcccchhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCC
Q 048752 126 WES-TNIWRSEFRLRLNNKICLKDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 126 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 194 (205)
+.. |...++|+.|+++.+.... +...+.+|+.|++++|. ++.+|..+ ..+++|+.+++++|+
T Consensus 394 Lt~LP~l~s~L~~LdLS~N~Lss--IP~l~~~L~~L~Ls~Nq---Lt~LP~sl--~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 394 LTSLPVLPSELKELMVSGNRLTS--LPMLPSGLLSLSVYRNQ---LTRLPESL--IHLSSETTVNLEGNP 456 (788)
T ss_pred ccCCCCcccCCCEEEccCCcCCC--CCcchhhhhhhhhccCc---ccccChHH--hhccCCCeEECCCCC
Confidence 333 3333455555553332110 11123456677777764 66778777 578899999999987
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.23 E-value=5.6e-12 Score=91.55 Aligned_cols=103 Identities=30% Similarity=0.385 Sum_probs=35.5
Q ss_pred cccCcccceeEeecCCCccccchhhc-cccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIEVG-QLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~i~-~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
.+.+..+++.|+|+++.|+.+.. ++ .+.+|+.|++++ +.++.++. +..++.|++|++++|+++.+++
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~-N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~-------- 81 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSN-NQITKLEG--LPGLPRLKTLDLSNNRISSISE-------- 81 (175)
T ss_dssp ----------------------S---TT-TT--EEE-TT-S--S--TT------TT--EEE--SS---S-CH--------
T ss_pred ccccccccccccccccccccccc-hhhhhcCCCEEECCC-CCCccccC--ccChhhhhhcccCCCCCCcccc--------
Confidence 34456678999999999988764 55 689999999999 78888874 8889999999999999998765
Q ss_pred cHHhh-cCCCCccEEEEEeeCCeeccCCcCcccccceEEe
Q 048752 82 SLEEL-KHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR 120 (205)
Q Consensus 82 ~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~ 120 (205)
.+ ..+++|+.|++++|++..+..--.+..+++|+.+
T Consensus 82 ---~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 82 ---GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp ---HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred ---chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 34 4689999999999999886543234444444444
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.16 E-value=1.6e-12 Score=103.03 Aligned_cols=90 Identities=22% Similarity=0.375 Sum_probs=74.4
Q ss_pred CCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcCCCCccEEE
Q 048752 17 GSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLE 96 (205)
Q Consensus 17 ~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~ 96 (205)
+-+++++|..+. +.-..++|.. |+++.+|++.|+.+++|+.||++.|.+.++.+ .++.++.+|.+|-
T Consensus 55 ~~GL~eVP~~LP--~~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p----------~AF~GL~~l~~Lv 121 (498)
T KOG4237|consen 55 GKGLTEVPANLP--PETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAP----------DAFKGLASLLSLV 121 (498)
T ss_pred CCCcccCcccCC--CcceEEEecc-CCcccCChhhccchhhhceecccccchhhcCh----------HhhhhhHhhhHHH
Confidence 447788887654 3556788888 89999999999999999999999999999988 7888888888887
Q ss_pred EEe-eCCeeccCCcCcccccceEEe
Q 048752 97 LDI-HDVNTLPRGLFLEKLGKYRIR 120 (205)
Q Consensus 97 l~~-~~~~~~~~~~~~~~L~~L~~~ 120 (205)
+++ |+++++++. .|..|.+++.+
T Consensus 122 lyg~NkI~~l~k~-~F~gL~slqrL 145 (498)
T KOG4237|consen 122 LYGNNKITDLPKG-AFGGLSSLQRL 145 (498)
T ss_pred hhcCCchhhhhhh-HhhhHHHHHHH
Confidence 777 799998888 66777666554
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=1.7e-11 Score=89.09 Aligned_cols=94 Identities=32% Similarity=0.434 Sum_probs=48.0
Q ss_pred Cccc-CcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhcccc
Q 048752 2 SVIG-DLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKN 80 (205)
Q Consensus 2 ~~i~-~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~ 80 (205)
+.++ .+.+|+.|++++|.|+.++. +..+++|++|++++ |+++++++.....+++|++|++++|++..+..
T Consensus 35 e~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~------- 105 (175)
T PF14580_consen 35 ENLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSNNKISDLNE------- 105 (175)
T ss_dssp -S--TT-TT--EEE-TTS--S--TT-----TT--EEE--S-S---S-CHHHHHH-TT--EEE-TTS---SCCC-------
T ss_pred cchhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcCCcCCChHH-------
Confidence 4455 47799999999999999875 88899999999999 89999987633579999999999999987654
Q ss_pred ccHHhhcCCCCccEEEEEeeCCeecc
Q 048752 81 ASLEELKHLPNLTSLELDIHDVNTLP 106 (205)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~~~~~~~~ 106 (205)
...++.+++|+.|++.+|.++..+
T Consensus 106 --l~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 106 --LEPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp --CGGGGG-TT--EEE-TT-GGGGST
T ss_pred --hHHHHcCCCcceeeccCCcccchh
Confidence 467889999999999999886543
No 24
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.14 E-value=3.8e-11 Score=72.25 Aligned_cols=60 Identities=33% Similarity=0.530 Sum_probs=49.4
Q ss_pred ccceeEeecCCCccccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCCCcc
Q 048752 8 KKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSF 68 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~ 68 (205)
++|++|++++|+++.+|.. +..+++|++|++++ +.++.++++.|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688888888888888864 78888888888887 677888877788888888888888764
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.10 E-value=2.5e-10 Score=90.87 Aligned_cols=178 Identities=19% Similarity=0.129 Sum_probs=90.4
Q ss_pred cCcccceeEeecCCCcc-ccchhhccccc---cceEeccCCCCCc-----ccChHHhhcc-cccceeecCCCccchhhhh
Q 048752 5 GDLKKLEILCLRGSDIK-QLPIEVGQLTW---LTLLDLRECRKLE-----VIPPNVLSNL-SHLEELCISRRSFQKWEVE 74 (205)
Q Consensus 5 ~~l~~L~~L~l~~~~i~-~lp~~i~~l~~---L~~L~l~~c~~l~-----~lp~~~~~~l-~~L~~L~l~~~~~~~~~~~ 74 (205)
..+++|+.|++++|.+. ..+..+..+.. |++|++++|. +. .+... +..+ ++|+.|++++|.++....
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~~- 154 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGASC- 154 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchHH-
Confidence 34566777777766664 23333444444 7777776643 33 12222 4445 666777777666652111
Q ss_pred hhccccccHHhhcCCCCccEEEEEeeCCee-----ccCCc-CcccccceEEeecccccc--------C-CCCCCCcceEE
Q 048752 75 VEGAKNASLEELKHLPNLTSLELDIHDVNT-----LPRGL-FLEKLGKYRIRIGDWYWE--------S-TNIWRSEFRLR 139 (205)
Q Consensus 75 i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~-~~~~L~~L~~~~~~~~~~--------~-~~~~~~L~~L~ 139 (205)
......+..+++|++|++++|.+.. ++..+ ...+|+.|.+. ++.+. . ...+++|++|+
T Consensus 155 -----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~--~n~i~~~~~~~l~~~~~~~~~L~~L~ 227 (319)
T cd00116 155 -----EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN--NNGLTDEGASALAETLASLKSLEVLN 227 (319)
T ss_pred -----HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEecc--CCccChHHHHHHHHHhcccCCCCEEe
Confidence 0112355666677777777776653 11111 11233333332 22211 1 22566777777
Q ss_pred ecCcccch---hhHHHh----cCCccEEEeccCchh--hHHhHHHHhhhcCCCCccEEeecCCC
Q 048752 140 LNNKICLK---DWLIVQ----LQGIEDLELRKLQEQ--DVIYFANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 140 l~~~~~~~---~~~~~~----~~~L~~L~l~~~~~~--~~~~~~~~l~~~~~~~L~~L~l~~~~ 194 (205)
++.+.... ..+... .+.|++|++++|... ....+...+ ..+++|+++++++|.
T Consensus 228 ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~--~~~~~L~~l~l~~N~ 289 (319)
T cd00116 228 LGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVL--AEKESLLELDLRGNK 289 (319)
T ss_pred cCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHH--hcCCCccEEECCCCC
Confidence 75543222 112212 267788888777521 123344444 355778888887776
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=8.1e-11 Score=96.68 Aligned_cols=172 Identities=26% Similarity=0.341 Sum_probs=128.3
Q ss_pred cCcccceeEeecCCCccccchhhcccc-ccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccH
Q 048752 5 GDLKKLEILCLRGSDIKQLPIEVGQLT-WLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASL 83 (205)
Q Consensus 5 ~~l~~L~~L~l~~~~i~~lp~~i~~l~-~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~ 83 (205)
..+..+..|++.++.++++|.....+. +|+.|++++ +.+..+|.. +..+++|+.|+++.|++.+++.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~---------- 180 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSP-LRNLPNLKNLDLSFNDLSDLPK---------- 180 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhh-hhccccccccccCCchhhhhhh----------
Confidence 345679999999999999999888885 999999999 889999765 8899999999999999999887
Q ss_pred HhhcCCCCccEEEEEeeCCeeccCCc-CcccccceEEeeccc-cccCC---CCCCCcceEEecCcccc--hhhHHHhcCC
Q 048752 84 EELKHLPNLTSLELDIHDVNTLPRGL-FLEKLGKYRIRIGDW-YWEST---NIWRSEFRLRLNNKICL--KDWLIVQLQG 156 (205)
Q Consensus 84 ~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~~~~~~~-~~~~~---~~~~~L~~L~l~~~~~~--~~~~~~~~~~ 156 (205)
..+.++.|+.|++++|++..+|... ....+..+. ++.+ ....+ .....+..+.+..+... +..+. .++.
T Consensus 181 -~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~--~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~-~l~~ 256 (394)
T COG4886 181 -LLSNLSNLNNLDLSGNKISDLPPEIELLSALEELD--LSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIG-NLSN 256 (394)
T ss_pred -hhhhhhhhhheeccCCccccCchhhhhhhhhhhhh--hcCCcceecchhhhhcccccccccCCceeeeccchhc-cccc
Confidence 5558899999999999999998753 112243333 3333 12222 24555555555444322 24455 6788
Q ss_pred ccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCC
Q 048752 157 IEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALN 198 (205)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~ 198 (205)
+++|++++|. +.+++. + ..+.+++.++++++.....
T Consensus 257 l~~L~~s~n~---i~~i~~-~--~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 257 LETLDLSNNQ---ISSISS-L--GSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cceecccccc---cccccc-c--cccCccCEEeccCcccccc
Confidence 9999999886 777765 5 5889999999999874433
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.08 E-value=7.6e-11 Score=104.72 Aligned_cols=86 Identities=28% Similarity=0.371 Sum_probs=68.7
Q ss_pred ccCcccceeEeecCC-CccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhcccccc
Q 048752 4 IGDLKKLEILCLRGS-DIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNAS 82 (205)
Q Consensus 4 i~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~ 82 (205)
|-.++.|++||+++| .+..+|.+|++|.+||+|++++ ..+..+|.+ +.+|..|.+|++..+......+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~--------- 635 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSG-LGNLKKLIYLNLEVTGRLESIP--------- 635 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchH-HHHHHhhheecccccccccccc---------
Confidence 667899999999988 7789999999999999999999 788899998 8999999999987766544333
Q ss_pred HHhhcCCCCccEEEEEeeC
Q 048752 83 LEELKHLPNLTSLELDIHD 101 (205)
Q Consensus 83 ~~~l~~l~~L~~L~l~~~~ 101 (205)
.....|++|++|.+....
T Consensus 636 -~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 636 -GILLELQSLRVLRLPRSA 653 (889)
T ss_pred -chhhhcccccEEEeeccc
Confidence 344557777777776543
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=4.2e-11 Score=92.40 Aligned_cols=133 Identities=20% Similarity=0.159 Sum_probs=68.0
Q ss_pred cccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcCCCCccEEEEEeeCCeeccCC
Q 048752 29 QLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDVNTLPRG 108 (205)
Q Consensus 29 ~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 108 (205)
-.+.|+.+|+++ |.++.+.++ ++-.+.++.|++++|.+..+. .+..+++|+.|++++|.++.+..+
T Consensus 282 TWq~LtelDLS~-N~I~~iDES-vKL~Pkir~L~lS~N~i~~v~------------nLa~L~~L~~LDLS~N~Ls~~~Gw 347 (490)
T KOG1259|consen 282 TWQELTELDLSG-NLITQIDES-VKLAPKLRRLILSQNRIRTVQ------------NLAELPQLQLLDLSGNLLAECVGW 347 (490)
T ss_pred hHhhhhhccccc-cchhhhhhh-hhhccceeEEeccccceeeeh------------hhhhcccceEeecccchhHhhhhh
Confidence 345555566666 555555555 555556666666666555432 345555666666666555544322
Q ss_pred cCcccccceEEeeccccccCCCCCCCcceEEecCcc-cchhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccE
Q 048752 109 LFLEKLGKYRIRIGDWYWESTNIWRSEFRLRLNNKI-CLKDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKF 187 (205)
Q Consensus 109 ~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~ 187 (205)
- ..+.+.++|.+..+. ....+++ -+..|..||+++|++..++++ ..+ +.+|-|+.
T Consensus 348 h--------------------~KLGNIKtL~La~N~iE~LSGL~-KLYSLvnLDl~~N~Ie~ldeV-~~I--G~LPCLE~ 403 (490)
T KOG1259|consen 348 H--------------------LKLGNIKTLKLAQNKIETLSGLR-KLYSLVNLDLSSNQIEELDEV-NHI--GNLPCLET 403 (490)
T ss_pred H--------------------hhhcCEeeeehhhhhHhhhhhhH-hhhhheeccccccchhhHHHh-ccc--ccccHHHH
Confidence 0 023334444443322 1222333 355666677766653333333 234 46666777
Q ss_pred EeecCCCCCCCCC
Q 048752 188 LRIHGCSDALNPP 200 (205)
Q Consensus 188 L~l~~~~~l~~lp 200 (205)
+.+.+|| ++.+|
T Consensus 404 l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 404 LRLTGNP-LAGSV 415 (490)
T ss_pred HhhcCCC-ccccc
Confidence 7777776 55444
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.00 E-value=1.2e-09 Score=86.91 Aligned_cols=62 Identities=23% Similarity=0.115 Sum_probs=28.0
Q ss_pred CCCcceEEecCcccchhh---HHH---hcCCccEEEeccCchhh--HHhHHHHhhhcCCCCccEEeecCCC
Q 048752 132 WRSEFRLRLNNKICLKDW---LIV---QLQGIEDLELRKLQEQD--VIYFANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 132 ~~~L~~L~l~~~~~~~~~---~~~---~~~~L~~L~l~~~~~~~--~~~~~~~l~~~~~~~L~~L~l~~~~ 194 (205)
.++|+.|+++.+...... +.. .+++|+.|++++|.... +..+...+. ...+.|+.|++++|.
T Consensus 192 ~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~-~~~~~L~~L~l~~n~ 261 (319)
T cd00116 192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL-SPNISLLTLSLSCND 261 (319)
T ss_pred CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHh-ccCCCceEEEccCCC
Confidence 346666666443221111 111 34567777777665110 011111111 123567777777765
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.99 E-value=2.4e-10 Score=68.70 Aligned_cols=61 Identities=36% Similarity=0.552 Sum_probs=56.0
Q ss_pred cccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcCCCCccEEEEEeeCC
Q 048752 31 TWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDV 102 (205)
Q Consensus 31 ~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~ 102 (205)
++|++|++++ +.++.+|+++|..+++|++|++++|.+..+++ ..+.++++|+.|++++|.+
T Consensus 1 p~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~----------~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSN-NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP----------DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETS-STESEECTTTTTTGTTESEEEETSSSESEEET----------TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCC-CCCCccCHHHHcCCCCCCEeEccCCccCccCH----------HHHcCCCCCCEEeCcCCcC
Confidence 5789999999 58999998889999999999999999999988 7889999999999998864
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=1e-10 Score=96.68 Aligned_cols=169 Identities=24% Similarity=0.334 Sum_probs=133.7
Q ss_pred cCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHH
Q 048752 5 GDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLE 84 (205)
Q Consensus 5 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~ 84 (205)
+.+..|+.+.++.|.+..+|..++++..|.++|++. +++..+|.. ++.|+ |+.|.+++|+++.+|.
T Consensus 95 ~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~-lC~lp-Lkvli~sNNkl~~lp~----------- 160 (722)
T KOG0532|consen 95 CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDG-LCDLP-LKVLIVSNNKLTSLPE----------- 160 (722)
T ss_pred HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChh-hhcCc-ceeEEEecCccccCCc-----------
Confidence 345667888899999999999999999999999999 899999998 77886 8999999999999887
Q ss_pred hhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-CCCCCCc--ceEEecCcc--cchhhHHHhcCCcc
Q 048752 85 ELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-TNIWRSE--FRLRLNNKI--CLKDWLIVQLQGIE 158 (205)
Q Consensus 85 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~~~~~~L--~~L~l~~~~--~~~~~~~~~~~~L~ 158 (205)
+++.++.|..|+.+.|.+.+++..+ ..+.+|+.. +..+.+.. |+.+..| ..|+++-|. ..|..+. .+..|+
T Consensus 161 ~ig~~~tl~~ld~s~nei~slpsql--~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr-~m~~Lq 237 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKNEIQSLPSQL--GYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFR-KMRHLQ 237 (722)
T ss_pred ccccchhHHHhhhhhhhhhhchHHh--hhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhh-hhhhhe
Confidence 8888889999999999999888754 778877777 66666555 5544444 666665443 3466677 689999
Q ss_pred EEEeccCchhhHHhHHHHhhhcCCC-CccEEeecCC
Q 048752 159 DLELRKLQEQDVIYFANELVKVGSS-QLKFLRIHGC 193 (205)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~l~~~~~~-~L~~L~l~~~ 193 (205)
+|-+.+|+ ++.-|..+...+.- =.|+|+++-|
T Consensus 238 ~l~LenNP---LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 238 VLQLENNP---LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeccCC---CCCChHHHHhccceeeeeeecchhc
Confidence 99998886 78877776434443 4788888888
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.75 E-value=1.1e-08 Score=91.19 Aligned_cols=173 Identities=21% Similarity=0.235 Sum_probs=111.0
Q ss_pred CcccceeEeecCCC--ccccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhcccccc
Q 048752 6 DLKKLEILCLRGSD--IKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNAS 82 (205)
Q Consensus 6 ~l~~L~~L~l~~~~--i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~ 82 (205)
.+++|+.|-+.++. +..++.. |..++.|++||+++|.....+|.. ++.|.+|++|+++++.+.++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~--------- 612 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPS--------- 612 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccch---------
Confidence 45578889888885 7777766 888999999999999999999998 9999999999999999999998
Q ss_pred HHhhcCCCCccEEEEEeeCC-eeccCCc-CcccccceEEeeccccccC-----CCCCCCcceEEecCccc--chh--hHH
Q 048752 83 LEELKHLPNLTSLELDIHDV-NTLPRGL-FLEKLGKYRIRIGDWYWES-----TNIWRSEFRLRLNNKIC--LKD--WLI 151 (205)
Q Consensus 83 ~~~l~~l~~L~~L~l~~~~~-~~~~~~~-~~~~L~~L~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~--~~~--~~~ 151 (205)
.++++.+|.+|++..+.- ..++... .+.+|+.|.+......... ...+.+|+.+.+..... ..+ .+.
T Consensus 613 --~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~ 690 (889)
T KOG4658|consen 613 --GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMT 690 (889)
T ss_pred --HHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhH
Confidence 999999999999998743 3343322 2344444444422111111 22455555555522111 011 111
Q ss_pred HhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCC
Q 048752 152 VQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSD 195 (205)
Q Consensus 152 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~ 195 (205)
......+.+.+..+. ....+..+ ..+.+|+.|.|.+|..
T Consensus 691 ~L~~~~~~l~~~~~~---~~~~~~~~--~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 691 RLRSLLQSLSIEGCS---KRTLISSL--GSLGNLEELSILDCGI 729 (889)
T ss_pred HHHHHhHhhhhcccc---cceeeccc--ccccCcceEEEEcCCC
Confidence 011222233333332 23334444 4778888888888873
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=1.2e-08 Score=83.76 Aligned_cols=168 Identities=26% Similarity=0.312 Sum_probs=128.3
Q ss_pred eEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhccc-ccceeecCCCccchhhhhhhccccccHHhhcCCC
Q 048752 12 ILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLS-HLEELCISRRSFQKWEVEVEGAKNASLEELKHLP 90 (205)
Q Consensus 12 ~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~-~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~ 90 (205)
.++...+.+..-+..+..++.++.|++.+ +.+..+|+. ...+. +|+.|+++.|++.+++. .++.++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~-n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~-----------~~~~l~ 163 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDN-NNITDIPPL-IGLLKSNLKELDLSDNKIESLPS-----------PLRNLP 163 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCC-cccccCccc-cccchhhcccccccccchhhhhh-----------hhhccc
Confidence 46777777755555677789999999999 789999986 66664 99999999999998875 789999
Q ss_pred CccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-CC---CCCCcceEEecCc--ccchhhHHHhcCCccEEEec
Q 048752 91 NLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-TN---IWRSEFRLRLNNK--ICLKDWLIVQLQGIEDLELR 163 (205)
Q Consensus 91 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~~---~~~~L~~L~l~~~--~~~~~~~~~~~~~L~~L~l~ 163 (205)
+|+.|+++.|.+..++... ..+..|..+ +.++.+.. |. ....|+++.++.+ ...+..+. .+.++..+.+.
T Consensus 164 ~L~~L~l~~N~l~~l~~~~--~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~-~~~~l~~l~l~ 240 (394)
T COG4886 164 NLKNLDLSFNDLSDLPKLL--SNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLS-NLKNLSGLELS 240 (394)
T ss_pred cccccccCCchhhhhhhhh--hhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhh-hcccccccccC
Confidence 9999999999999988653 255555555 56666655 33 4445999999766 23344455 57888888877
Q ss_pred cCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCC
Q 048752 164 KLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPA 201 (205)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~ 201 (205)
+++ +...+..+ ..+++++.|++++|. +..++.
T Consensus 241 ~n~---~~~~~~~~--~~l~~l~~L~~s~n~-i~~i~~ 272 (394)
T COG4886 241 NNK---LEDLPESI--GNLSNLETLDLSNNQ-ISSISS 272 (394)
T ss_pred Cce---eeeccchh--ccccccceecccccc-cccccc
Confidence 775 56656666 588899999999998 777764
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=4.6e-09 Score=84.57 Aligned_cols=174 Identities=20% Similarity=0.172 Sum_probs=105.3
Q ss_pred cCcccceeEeecCCCcc---ccchhhccccccceEeccCCCCCcccChH-HhhcccccceeecCCCccchhhhhhhcccc
Q 048752 5 GDLKKLEILCLRGSDIK---QLPIEVGQLTWLTLLDLRECRKLEVIPPN-VLSNLSHLEELCISRRSFQKWEVEVEGAKN 80 (205)
Q Consensus 5 ~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~c~~l~~lp~~-~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~ 80 (205)
..|++++.|||++|-+. .+-.....|++|+.|+++. |++...-.+ .-..+++|+.|.++.|.++.-..
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V------- 214 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDV------- 214 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCccccchhhhhhhheEEeccCCCCHHHH-------
Confidence 46899999999999664 3444467899999999999 566543322 13467899999999998884332
Q ss_pred ccHHhhcCCCCccEEEEEeeCCe---eccCCcCcccccceEEeecc-ccccC---CCCCCCcceEEecCc-ccc---hh-
Q 048752 81 ASLEELKHLPNLTSLELDIHDVN---TLPRGLFLEKLGKYRIRIGD-WYWES---TNIWRSEFRLRLNNK-ICL---KD- 148 (205)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~~~L~~L~~~~~~-~~~~~---~~~~~~L~~L~l~~~-~~~---~~- 148 (205)
..-+..+++|..|.+..|... ..+.. .+..|+.|.+.-.. ..+.. ...++.|.-|.++.+ +.. +.
T Consensus 215 --~~~~~~fPsl~~L~L~~N~~~~~~~~~~~-i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~ 291 (505)
T KOG3207|consen 215 --QWILLTFPSLEVLYLEANEIILIKATSTK-ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV 291 (505)
T ss_pred --HHHHHhCCcHHHhhhhcccccceecchhh-hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCc
Confidence 134467788888888877421 11222 33334444433111 11111 235666666666322 111 11
Q ss_pred ---hHHHhcCCccEEEeccCchhhHHhHHH--HhhhcCCCCccEEeecCCC
Q 048752 149 ---WLIVQLQGIEDLELRKLQEQDVIYFAN--ELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 149 ---~~~~~~~~L~~L~l~~~~~~~~~~~~~--~l~~~~~~~L~~L~l~~~~ 194 (205)
.....|++|++|.+..|+ +.+++. .+ +-+++|+.|.+..|.
T Consensus 292 ~s~~kt~~f~kL~~L~i~~N~---I~~w~sl~~l--~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 292 ESLDKTHTFPKLEYLNISENN---IRDWRSLNHL--RTLENLKHLRITLNY 337 (505)
T ss_pred cchhhhcccccceeeecccCc---cccccccchh--hccchhhhhhccccc
Confidence 112268999999999887 444432 23 356788888877765
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.56 E-value=1.4e-07 Score=81.99 Aligned_cols=88 Identities=26% Similarity=0.380 Sum_probs=75.1
Q ss_pred cceeEeecCCCcc-ccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhc
Q 048752 9 KLEILCLRGSDIK-QLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELK 87 (205)
Q Consensus 9 ~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~ 87 (205)
.++.|+|+++.+. .+|..++.+++|+.|+|++|.....+|.. +..+++|+.|++++|++....+ +.++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP----------~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIP----------ESLG 487 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCc----------hHHh
Confidence 4788999999995 77888999999999999995544578887 8999999999999999985444 5899
Q ss_pred CCCCccEEEEEeeCCee-ccC
Q 048752 88 HLPNLTSLELDIHDVNT-LPR 107 (205)
Q Consensus 88 ~l~~L~~L~l~~~~~~~-~~~ 107 (205)
.+++|+.|++++|.+.. +|.
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred cCCCCCEEECcCCcccccCCh
Confidence 99999999999998875 444
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=8.6e-09 Score=83.03 Aligned_cols=173 Identities=18% Similarity=0.185 Sum_probs=90.4
Q ss_pred CcccceeEeecCCCccccch--hhccccccceEeccCCCCCcccC--hHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 6 DLKKLEILCLRGSDIKQLPI--EVGQLTWLTLLDLRECRKLEVIP--PNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~l~~lp--~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
++.+|+...|+++++...+. ....+++++.||++. +.+.... .+++..|++|+.|+++.|++...-.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-------- 189 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-------- 189 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchh-hhHHhHHHHHHHHHhcccchhcccccccccCCcc--------
Confidence 45566666676666655553 466677777777777 4444322 2345667777777777776653222
Q ss_pred cHHhhcCCCCccEEEEEeeCCeeccCCc---CcccccceEEeeccc-cccC--CCCCCCcceEEecCcc--cchh--hHH
Q 048752 82 SLEELKHLPNLTSLELDIHDVNTLPRGL---FLEKLGKYRIRIGDW-YWES--TNIWRSEFRLRLNNKI--CLKD--WLI 151 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~~~~~~~-~~~~--~~~~~~L~~L~l~~~~--~~~~--~~~ 151 (205)
...-..++.|+.|.++.|.+++-.-.- .++.+..|...-... .... ...+..|++|+|+.+. ..+. ..+
T Consensus 190 -s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 190 -SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred -ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccc
Confidence 011235566677777777665311000 233343333331110 1111 2245566777774332 2221 122
Q ss_pred HhcCCccEEEeccCchhhHHhH--HHH-----hhhcCCCCccEEeecCCC
Q 048752 152 VQLQGIEDLELRKLQEQDVIYF--ANE-----LVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 152 ~~~~~L~~L~l~~~~~~~~~~~--~~~-----l~~~~~~~L~~L~l~~~~ 194 (205)
.|+.|..|.++.|. +.++ |+. . ..+++|++|++..|+
T Consensus 269 -~l~~L~~Lnls~tg---i~si~~~d~~s~~kt--~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 269 -TLPGLNQLNLSSTG---IASIAEPDVESLDKT--HTFPKLEYLNISENN 312 (505)
T ss_pred -cccchhhhhccccC---cchhcCCCccchhhh--cccccceeeecccCc
Confidence 57777777777664 3322 222 2 357888888888877
No 37
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.56 E-value=8.1e-08 Score=53.50 Aligned_cols=41 Identities=37% Similarity=0.505 Sum_probs=29.7
Q ss_pred ccceeEeecCCCccccchhhccccccceEeccCCCCCcccCh
Q 048752 8 KKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPP 49 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~ 49 (205)
++|++|++++|+|+.+|..+++|++|++|++++ +.++.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~-N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSN-NPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETS-SCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecC-CCCCCCcC
Confidence 467888888888888887788888888888888 46666553
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.54 E-value=5.6e-09 Score=86.45 Aligned_cols=89 Identities=28% Similarity=0.356 Sum_probs=63.1
Q ss_pred ccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccH
Q 048752 4 IGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASL 83 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~ 83 (205)
++.+.+|+.|++++|+|+.+...+..+++|++|++++ +.++.+.. +..++.|+.|++.+|.+..+..
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~---------- 157 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEG--LSTLTLLKELNLSGNLISDISG---------- 157 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccc-cccccccc--hhhccchhhheeccCcchhccC----------
Confidence 5667777888888887777776667778888888887 67777765 6677777888887777775543
Q ss_pred HhhcCCCCccEEEEEeeCCeeccC
Q 048752 84 EELKHLPNLTSLELDIHDVNTLPR 107 (205)
Q Consensus 84 ~~l~~l~~L~~L~l~~~~~~~~~~ 107 (205)
+..+..|+.+++++|.+..+..
T Consensus 158 --~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 158 --LESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred --CccchhhhcccCCcchhhhhhh
Confidence 4446666667777776666554
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.50 E-value=6.4e-09 Score=86.08 Aligned_cols=121 Identities=26% Similarity=0.231 Sum_probs=93.8
Q ss_pred CcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHh
Q 048752 6 DLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEE 85 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~ 85 (205)
.+..++.++++.+.++..-..++.+.+|.++++.+ +.++.+... +..+++|++|++++|.+..+.+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~------------ 135 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYD-NKIEKIENL-LSSLVNLQVLDLSFNKITKLEG------------ 135 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccc-cchhhcccc-hhhhhcchheeccccccccccc------------
Confidence 35667777788888887666688999999999999 788888764 6789999999999999987654
Q ss_pred hcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC--C---CCCCCcceEEecCc
Q 048752 86 LKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES--T---NIWRSEFRLRLNNK 143 (205)
Q Consensus 86 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~--~---~~~~~L~~L~l~~~ 143 (205)
+..++.|+.|++.+|.++.+... ..+..+++. ++++.+.. + ..+.+++.+++..+
T Consensus 136 l~~l~~L~~L~l~~N~i~~~~~~---~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 136 LSTLTLLKELNLSGNLISDISGL---ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred hhhccchhhheeccCcchhccCC---ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 67777899999999999998754 446666666 66654433 3 56677777777544
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.47 E-value=5.7e-07 Score=73.36 Aligned_cols=129 Identities=19% Similarity=0.257 Sum_probs=79.3
Q ss_pred CcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCC-ccchhhhhhhccccccHH
Q 048752 6 DLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRR-SFQKWEVEVEGAKNASLE 84 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~-~~~~~~~~i~~~~~~~~~ 84 (205)
.+.+++.|++++|.++.+|. -..+|+.|.+++|+.++.+|.. + ..+|++|++++| .+..+|.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~----------- 112 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE----------- 112 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc-----------
Confidence 46789999999999999983 2347999999999999888865 3 358999999888 5554444
Q ss_pred hhcCCCCccEEEEEeeCC---eeccCCcCcccccceEEe-eccccccC-CCC-CCCcceEEecCccc--chhhHHHhcCC
Q 048752 85 ELKHLPNLTSLELDIHDV---NTLPRGLFLEKLGKYRIR-IGDWYWES-TNI-WRSEFRLRLNNKIC--LKDWLIVQLQG 156 (205)
Q Consensus 85 ~l~~l~~L~~L~l~~~~~---~~~~~~~~~~~L~~L~~~-~~~~~~~~-~~~-~~~L~~L~l~~~~~--~~~~~~~~~~~ 156 (205)
.|+.|++.++.. ..+|+ +|+.|.+. ........ +.. .++|++|.+..... .+.. ....
T Consensus 113 ------sLe~L~L~~n~~~~L~~LPs-----sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~---LP~S 178 (426)
T PRK15386 113 ------SVRSLEIKGSATDSIKNVPN-----GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEK---LPES 178 (426)
T ss_pred ------ccceEEeCCCCCcccccCcc-----hHhheeccccccccccccccccCCcccEEEecCCCcccCccc---cccc
Confidence 366677766543 34443 34444442 11100011 212 24677777743321 1211 2357
Q ss_pred ccEEEeccC
Q 048752 157 IEDLELRKL 165 (205)
Q Consensus 157 L~~L~l~~~ 165 (205)
|+.|.++.+
T Consensus 179 Lk~L~ls~n 187 (426)
T PRK15386 179 LQSITLHIE 187 (426)
T ss_pred CcEEEeccc
Confidence 777777654
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.45 E-value=2.9e-07 Score=79.92 Aligned_cols=88 Identities=26% Similarity=0.345 Sum_probs=71.6
Q ss_pred cccCcccceeEeecCCCcc-ccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccch-hhhhhhcccc
Q 048752 3 VIGDLKKLEILCLRGSDIK-QLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQK-WEVEVEGAKN 80 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~-~~~~i~~~~~ 80 (205)
.++++++|+.|+|++|.+. .+|..++.+++|++|++++|+....+|+. +..|++|++|++++|.+.. +|.
T Consensus 437 ~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls~N~l~g~iP~------- 508 (623)
T PLN03150 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNGNSLSGRVPA------- 508 (623)
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECcCCcccccCCh-------
Confidence 4668899999999999996 78888999999999999996555578887 9999999999999999874 444
Q ss_pred ccHHhhcC-CCCccEEEEEeeCC
Q 048752 81 ASLEELKH-LPNLTSLELDIHDV 102 (205)
Q Consensus 81 ~~~~~l~~-l~~L~~L~l~~~~~ 102 (205)
.++. ..++..+++.+|..
T Consensus 509 ----~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 509 ----ALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred ----HHhhccccCceEEecCCcc
Confidence 4543 34566788887743
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=4.6e-08 Score=75.87 Aligned_cols=118 Identities=24% Similarity=0.182 Sum_probs=88.4
Q ss_pred cccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh
Q 048752 7 LKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL 86 (205)
Q Consensus 7 l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l 86 (205)
...|+.+||++|.|+.+-.++.-+++++.|+++. |++..+.. +..+++|++||+++|.+.++.. .=
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~G-----------wh 348 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQ-NRIRTVQN--LAELPQLQLLDLSGNLLAECVG-----------WH 348 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccc-cceeeehh--hhhcccceEeecccchhHhhhh-----------hH
Confidence 4678999999999999999999999999999999 78888875 8899999999999999987765 33
Q ss_pred cCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC------CCCCCCcceEEec
Q 048752 87 KHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES------TNIWRSEFRLRLN 141 (205)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~------~~~~~~L~~L~l~ 141 (205)
.++-++++|.+++|.++++. .+++|.+|..+ ..++.++. ...++.|+++.+.
T Consensus 349 ~KLGNIKtL~La~N~iE~LS---GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIETLS---GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred hhhcCEeeeehhhhhHhhhh---hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 45667777777777777765 33555555544 44433322 2255666666663
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.37 E-value=8.4e-07 Score=69.89 Aligned_cols=164 Identities=17% Similarity=0.117 Sum_probs=72.2
Q ss_pred cccccceEeccCCCCCc-c-cC--hHHhhcccccceeecCCCccchhhhhhhcc---ccccHHhhcCCCCccEEEEEeeC
Q 048752 29 QLTWLTLLDLRECRKLE-V-IP--PNVLSNLSHLEELCISRRSFQKWEVEVEGA---KNASLEELKHLPNLTSLELDIHD 101 (205)
Q Consensus 29 ~l~~L~~L~l~~c~~l~-~-lp--~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~---~~~~~~~l~~l~~L~~L~l~~~~ 101 (205)
..++|+++|||+| -+. . ++ .+.+.....|++|++.+|.+-......-+. .-...+-.+.-++|+++....|.
T Consensus 90 ~~~~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred cCCceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 3456777777763 222 1 11 123555666777777666554333211110 00022334455667777777776
Q ss_pred CeeccCCc---Cc---ccccceEEeecc---ccccC----CCCCCCcceEEecCcccch-hh--HHH---hcCCccEEEe
Q 048752 102 VNTLPRGL---FL---EKLGKYRIRIGD---WYWES----TNIWRSEFRLRLNNKICLK-DW--LIV---QLQGIEDLEL 162 (205)
Q Consensus 102 ~~~~~~~~---~~---~~L~~L~~~~~~---~~~~~----~~~~~~L~~L~l~~~~~~~-~~--~~~---~~~~L~~L~l 162 (205)
+...+..- .+ +.+..+++.-.+ ..++. -..+++|+.|++..|.... .. +.. .++.|+.|.+
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 65433211 11 223333333111 11100 1256666666664442211 11 111 3456666666
Q ss_pred ccCch--hhHHhHHHHhhhcCCCCccEEeecCCC
Q 048752 163 RKLQE--QDVIYFANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 163 ~~~~~--~~~~~~~~~l~~~~~~~L~~L~l~~~~ 194 (205)
++|.. .....+-..+. +..|+|+++.+.+|.
T Consensus 249 ~dcll~~~Ga~a~~~al~-~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALK-ESAPSLEVLELAGNE 281 (382)
T ss_pred cccccccccHHHHHHHHh-ccCCCCceeccCcch
Confidence 66630 01122333333 445666666666664
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.36 E-value=8.2e-09 Score=88.04 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=24.7
Q ss_pred EeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhh
Q 048752 13 LCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWE 72 (205)
Q Consensus 13 L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~ 72 (205)
-+.++|+++.+-.++.-++.|+.|+|+. |+++.+. . +..+++|++||+++|.++.+|
T Consensus 169 a~fsyN~L~~mD~SLqll~ale~LnLsh-Nk~~~v~-~-Lr~l~~LkhLDlsyN~L~~vp 225 (1096)
T KOG1859|consen 169 ASFSYNRLVLMDESLQLLPALESLNLSH-NKFTKVD-N-LRRLPKLKHLDLSYNCLRHVP 225 (1096)
T ss_pred hhcchhhHHhHHHHHHHHHHhhhhccch-hhhhhhH-H-HHhcccccccccccchhcccc
Confidence 3344444444444444444444444444 3344333 1 444444444444444444443
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.34 E-value=4.7e-07 Score=50.39 Aligned_cols=41 Identities=34% Similarity=0.498 Sum_probs=24.7
Q ss_pred cccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhh
Q 048752 31 TWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEV 73 (205)
Q Consensus 31 ~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 73 (205)
++|++|++++ +.++.+|+. +++|++|++|++++|+++++++
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPE-LSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGH-GTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccC-CCCcccCch-HhCCCCCCEEEecCCCCCCCcC
Confidence 3566666666 466666665 6666666666666666665543
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.23 E-value=3.1e-07 Score=72.26 Aligned_cols=182 Identities=19% Similarity=0.176 Sum_probs=104.0
Q ss_pred ccCcccceeEeecCCCcc-----ccchhhccccccceEeccCCCCCcccChHH-------------hhcccccceeecCC
Q 048752 4 IGDLKKLEILCLRGSDIK-----QLPIEVGQLTWLTLLDLRECRKLEVIPPNV-------------LSNLSHLEELCISR 65 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~-------------~~~l~~L~~L~l~~ 65 (205)
+-++++|+++|||.|-+. .+-.-+..++.|++|+|.+| .+....... +..=+.|++++.++
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 446779999999999662 23334778999999999997 333222111 33445799999988
Q ss_pred CccchhhhhhhccccccHHhhcCCCCccEEEEEeeCCeeccCCc---CcccccceEEe-eccccccC---------CCCC
Q 048752 66 RSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDVNTLPRGL---FLEKLGKYRIR-IGDWYWES---------TNIW 132 (205)
Q Consensus 66 ~~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~~~-~~~~~~~~---------~~~~ 132 (205)
|++-..+.. .....+...+.|+.+.+..|.+..--... .+...+.|+++ +.++.+.. ...+
T Consensus 167 Nrlen~ga~------~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 167 NRLENGGAT------ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW 240 (382)
T ss_pred cccccccHH------HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence 887755541 11134455566666666666543200000 34445555555 44433222 1145
Q ss_pred CCcceEEecCcc-------cchhhHHHhcCCccEEEeccCchhh--HHhHHHHhhhcCCCCccEEeecCCC
Q 048752 133 RSEFRLRLNNKI-------CLKDWLIVQLQGIEDLELRKLQEQD--VIYFANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 133 ~~L~~L~l~~~~-------~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~l~~~~~~~L~~L~l~~~~ 194 (205)
+.|+.++++... .....+....+.|+.|++.+|.... ...+-..+ ...+.|..|++++|.
T Consensus 241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~--~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACM--AEKPDLEKLNLNGNR 309 (382)
T ss_pred chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHH--hcchhhHHhcCCccc
Confidence 566666664321 1122333357888888888886211 01112223 457888888888887
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.1e-07 Score=73.65 Aligned_cols=171 Identities=22% Similarity=0.244 Sum_probs=109.9
Q ss_pred cceeEeecCCCcc--ccchhhccccccceEeccCCCCCc-ccChHHhhcccccceeecCCCc-cchhhhhhhccccccHH
Q 048752 9 KLEILCLRGSDIK--QLPIEVGQLTWLTLLDLRECRKLE-VIPPNVLSNLSHLEELCISRRS-FQKWEVEVEGAKNASLE 84 (205)
Q Consensus 9 ~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~-~lp~~~~~~l~~L~~L~l~~~~-~~~~~~~i~~~~~~~~~ 84 (205)
.|++|||+...|+ .+..-++.+.+|+.|.+-+ .++. .+-.. +.+-.+|+.|++++|+ +++... .-
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~---------~l 254 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNT-IAKNSNLVRLNLSMCSGFTENAL---------QL 254 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHH-HhccccceeeccccccccchhHH---------HH
Confidence 5888999988774 4555577888888888888 4444 34444 6677789999998775 333332 12
Q ss_pred hhcCCCCccEEEEEeeCCeeccCCc----CcccccceEEe-e----ccccccC-CCCCCCcceEEecCcccc-hhhHHH-
Q 048752 85 ELKHLPNLTSLELDIHDVNTLPRGL----FLEKLGKYRIR-I----GDWYWES-TNIWRSEFRLRLNNKICL-KDWLIV- 152 (205)
Q Consensus 85 ~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~~~-~----~~~~~~~-~~~~~~L~~L~l~~~~~~-~~~~~~- 152 (205)
-+..++.|+.|++++|.+..-...+ .-.+++.|.+. . +.++++. ...++++..|+++.+... +..+..
T Consensus 255 l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~ 334 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 334 (419)
T ss_pred HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH
Confidence 4578899999999998664421111 22345555444 1 1122333 348999999999655332 233332
Q ss_pred -hcCCccEEEeccCchhhHHhHHHHhh-hcCCCCccEEeecCCC
Q 048752 153 -QLQGIEDLELRKLQEQDVIYFANELV-KVGSSQLKFLRIHGCS 194 (205)
Q Consensus 153 -~~~~L~~L~l~~~~~~~~~~~~~~l~-~~~~~~L~~L~l~~~~ 194 (205)
.|+.|++|.++.|+ .+. |..+. ....|+|.+|++-+|-
T Consensus 335 ~kf~~L~~lSlsRCY--~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCY--DII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred Hhcchheeeehhhhc--CCC--hHHeeeeccCcceEEEEecccc
Confidence 58999999999998 443 33221 2577999999998874
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.20 E-value=2.7e-06 Score=62.40 Aligned_cols=85 Identities=25% Similarity=0.355 Sum_probs=51.4
Q ss_pred cceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcC
Q 048752 9 KLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKH 88 (205)
Q Consensus 9 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~ 88 (205)
....+||+.|.+..++. +..++.|.+|.+++ |++..+.+..-..+++|+.|.+.+|++.++.. +..+..
T Consensus 43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d---------l~pLa~ 111 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELGD---------LDPLAS 111 (233)
T ss_pred ccceecccccchhhccc-CCCccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhhh---------cchhcc
Confidence 34456666666655554 55666666666666 56666666533445566666666666666554 345566
Q ss_pred CCCccEEEEEeeCCee
Q 048752 89 LPNLTSLELDIHDVNT 104 (205)
Q Consensus 89 l~~L~~L~l~~~~~~~ 104 (205)
+++|+.|.+-+|.++.
T Consensus 112 ~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVEH 127 (233)
T ss_pred CCccceeeecCCchhc
Confidence 6666666666655544
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.13 E-value=3.4e-07 Score=63.25 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=77.2
Q ss_pred ceeEeecCCCccccchh---hccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh
Q 048752 10 LEILCLRGSDIKQLPIE---VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL 86 (205)
Q Consensus 10 L~~L~l~~~~i~~lp~~---i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l 86 (205)
+-.+||+.|.+..+++. +...+.|...++++ |.++.+|+.+-.+.+-.+++++.+|.+.++|. ++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neisdvPe-----------E~ 96 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEISDVPE-----------EL 96 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhhhchH-----------HH
Confidence 45678888977766665 55667788889999 89999999844556689999999999999998 69
Q ss_pred cCCCCccEEEEEeeCCeeccCCcCcccccceEEe
Q 048752 87 KHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR 120 (205)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~ 120 (205)
..++.|+.|+++.|.+...|..+ -.|.++..+
T Consensus 97 Aam~aLr~lNl~~N~l~~~p~vi--~~L~~l~~L 128 (177)
T KOG4579|consen 97 AAMPALRSLNLRFNPLNAEPRVI--APLIKLDML 128 (177)
T ss_pred hhhHHhhhcccccCccccchHHH--HHHHhHHHh
Confidence 99999999999999998888764 225555544
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.08 E-value=1e-07 Score=81.49 Aligned_cols=99 Identities=20% Similarity=0.214 Sum_probs=74.8
Q ss_pred CcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHh
Q 048752 6 DLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEE 85 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~ 85 (205)
-+++|+.|||++|+++.+- .+..+++|++||++. |.+..+|.--+..++ |+.|.+.+|.++.+. +
T Consensus 185 ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~------------g 249 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLNLRNNALTTLR------------G 249 (1096)
T ss_pred HHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhhh-heeeeecccHHHhhh------------h
Confidence 4678999999999998887 588999999999999 788988863233444 999999999988765 4
Q ss_pred hcCCCCccEEEEEeeCCeeccCCcCcccccceEE
Q 048752 86 LKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRI 119 (205)
Q Consensus 86 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~ 119 (205)
+.++.+|+.|++++|-+....+-..++.|..|..
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~ 283 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV 283 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH
Confidence 7788889999999987766544323333444433
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.97 E-value=1.3e-06 Score=60.44 Aligned_cols=92 Identities=15% Similarity=0.213 Sum_probs=77.7
Q ss_pred ccCcccceeEeecCCCccccchhhc-cccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhcccccc
Q 048752 4 IGDLKKLEILCLRGSDIKQLPIEVG-QLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNAS 82 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp~~i~-~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~ 82 (205)
+.+..+|...++++|.+..+|..+. +++-++.+++.. +.+..+|.+ +..|+.|+.++++.|.+...|.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~--------- 117 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEE-LAAMPALRSLNLRFNPLNAEPR--------- 117 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHH-HhhhHHhhhcccccCccccchH---------
Confidence 3466889999999999999998854 566999999999 899999999 9999999999999999998776
Q ss_pred HHhhcCCCCccEEEEEeeCCeeccCC
Q 048752 83 LEELKHLPNLTSLELDIHDVNTLPRG 108 (205)
Q Consensus 83 ~~~l~~l~~L~~L~l~~~~~~~~~~~ 108 (205)
-+..+.++-.|+.-+|....++-+
T Consensus 118 --vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 118 --VIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred --HHHHHHhHHHhcCCCCccccCcHH
Confidence 566688888888877776665544
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.88 E-value=1.7e-05 Score=69.55 Aligned_cols=84 Identities=21% Similarity=0.349 Sum_probs=61.2
Q ss_pred ccceeEeecCCCc--cccchhhc-cccccceEeccCCCCCcccC-hHHhhcccccceeecCCCccchhhhhhhccccccH
Q 048752 8 KKLEILCLRGSDI--KQLPIEVG-QLTWLTLLDLRECRKLEVIP-PNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASL 83 (205)
Q Consensus 8 ~~L~~L~l~~~~i--~~lp~~i~-~l~~L~~L~l~~c~~l~~lp-~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~ 83 (205)
.+|+.||++|... ...|..++ .||+|+.|.+.+ ..+..-. .....++++|..||++++.++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl------------ 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTNISNL------------ 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCCccCc------------
Confidence 5788999998733 45555544 689999999988 4443211 23367889999999999888765
Q ss_pred HhhcCCCCccEEEEEeeCCee
Q 048752 84 EELKHLPNLTSLELDIHDVNT 104 (205)
Q Consensus 84 ~~l~~l~~L~~L~l~~~~~~~ 104 (205)
.+++.+++|++|.+.+-.++.
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~ 209 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFES 209 (699)
T ss_pred HHHhccccHHHHhccCCCCCc
Confidence 368899999998887765554
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.85 E-value=2.6e-05 Score=57.36 Aligned_cols=82 Identities=26% Similarity=0.372 Sum_probs=58.7
Q ss_pred eeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh-cCC
Q 048752 11 EILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL-KHL 89 (205)
Q Consensus 11 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l-~~l 89 (205)
+.+++++.++..+..--.-+.....+|+++ +.+..++. +..++.|.+|.++.|.++++.+ .+ ..+
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtd-Ndl~~l~~--lp~l~rL~tLll~nNrIt~I~p-----------~L~~~~ 87 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTD-NDLRKLDN--LPHLPRLHTLLLNNNRITRIDP-----------DLDTFL 87 (233)
T ss_pred cccccccccccchhhccccccccceecccc-cchhhccc--CCCccccceEEecCCcceeecc-----------chhhhc
Confidence 456666655543333112245667789998 67777775 8888999999999999998888 44 356
Q ss_pred CCccEEEEEeeCCeecc
Q 048752 90 PNLTSLELDIHDVNTLP 106 (205)
Q Consensus 90 ~~L~~L~l~~~~~~~~~ 106 (205)
++|++|.+++|.+..+.
T Consensus 88 p~l~~L~LtnNsi~~l~ 104 (233)
T KOG1644|consen 88 PNLKTLILTNNSIQELG 104 (233)
T ss_pred cccceEEecCcchhhhh
Confidence 77999999999876654
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.77 E-value=0.00018 Score=55.59 Aligned_cols=179 Identities=15% Similarity=0.152 Sum_probs=94.1
Q ss_pred cccceeEeecCCCcc-----ccchhhccccccceEeccCCCCCcc----cChH------HhhcccccceeecCCCccchh
Q 048752 7 LKKLEILCLRGSDIK-----QLPIEVGQLTWLTLLDLRECRKLEV----IPPN------VLSNLSHLEELCISRRSFQKW 71 (205)
Q Consensus 7 l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~c~~l~~----lp~~------~~~~l~~L~~L~l~~~~~~~~ 71 (205)
+..+..++||||.|. .+...|.+-.+|+..++++ ..... ++.. ++-+++.|+..+++.|.+-..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 556778888888773 3444566666777777765 22221 2221 145567777777777654421
Q ss_pred hhhhhccccccHHhhcCCCCccEEEEEeeCCeeccCCc------------CcccccceEEe-eccccccC-CC-------
Q 048752 72 EVEVEGAKNASLEELKHLPNLTSLELDIHDVNTLPRGL------------FLEKLGKYRIR-IGDWYWES-TN------- 130 (205)
Q Consensus 72 ~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------------~~~~L~~L~~~-~~~~~~~~-~~------- 130 (205)
.+ ......+.+-+.|..|.+++|.+.-+...- .-..-+.|+.. +|.+.+.. +.
T Consensus 108 ~~------e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l 181 (388)
T COG5238 108 FP------EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALL 181 (388)
T ss_pred cc------hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHH
Confidence 11 011134566667777777776553222211 11223345555 44444433 21
Q ss_pred -CCCCcceEEecCcccchhhHHH-------hcCCccEEEeccCchhhHHh--HHHHhhhcCCCCccEEeecCCC
Q 048752 131 -IWRSEFRLRLNNKICLKDWLIV-------QLQGIEDLELRKLQEQDVIY--FANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 131 -~~~~L~~L~l~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~--~~~~l~~~~~~~L~~L~l~~~~ 194 (205)
...+++++.+..+...|.++.. ..++|+.|++..|......+ +...+ +.-+.|+.|++.+|-
T Consensus 182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al--~~W~~lrEL~lnDCl 253 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL--CEWNLLRELRLNDCL 253 (388)
T ss_pred HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh--cccchhhhccccchh
Confidence 2346777777666555553332 35778888888775111111 11112 233557777777773
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=9.4e-06 Score=63.14 Aligned_cols=82 Identities=24% Similarity=0.315 Sum_probs=49.4
Q ss_pred CcccceeEeecCCCccccc---hhhccccccceEeccCCCCCc----ccChHHhhcccccceeecCCCccchhhhhhhcc
Q 048752 6 DLKKLEILCLRGSDIKQLP---IEVGQLTWLTLLDLRECRKLE----VIPPNVLSNLSHLEELCISRRSFQKWEVEVEGA 78 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~~lp---~~i~~l~~L~~L~l~~c~~l~----~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~ 78 (205)
++.+++.|||.+|.|+... ....+|+.|++|+++. |.+. ++| ..+.+|++|.+.+..+.-...
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~-N~L~s~I~~lp----~p~~nl~~lVLNgT~L~w~~~----- 138 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC-NSLSSDIKSLP----LPLKNLRVLVLNGTGLSWTQS----- 138 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC-CcCCCccccCc----ccccceEEEEEcCCCCChhhh-----
Confidence 4567777888888775443 3356788888888876 4333 333 134567777776665532111
Q ss_pred ccccHHhhcCCCCccEEEEEeeC
Q 048752 79 KNASLEELKHLPNLTSLELDIHD 101 (205)
Q Consensus 79 ~~~~~~~l~~l~~L~~L~l~~~~ 101 (205)
-..+..++.++.|.++.|.
T Consensus 139 ----~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 139 ----TSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred ----hhhhhcchhhhhhhhccch
Confidence 1355667777777777663
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=6.8e-06 Score=63.34 Aligned_cols=101 Identities=26% Similarity=0.381 Sum_probs=76.9
Q ss_pred cccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh
Q 048752 7 LKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL 86 (205)
Q Consensus 7 l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l 86 (205)
+.+.+.|+.-||++..+.- ..+|+.|++|.|+- |++.++-+ +..+..|+.|++..|.+..+.. ++-+
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSv-NkIssL~p--l~rCtrLkElYLRkN~I~sldE---------L~YL 84 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSV-NKISSLAP--LQRCTRLKELYLRKNCIESLDE---------LEYL 84 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeec-cccccchh--HHHHHHHHHHHHHhcccccHHH---------HHHH
Confidence 4566778888898887764 56799999999999 78888876 8899999999999999887776 6778
Q ss_pred cCCCCccEEEEEeeCC--eeccCCc-----CcccccceEEe
Q 048752 87 KHLPNLTSLELDIHDV--NTLPRGL-----FLEKLGKYRIR 120 (205)
Q Consensus 87 ~~l~~L~~L~l~~~~~--~~~~~~~-----~~~~L~~L~~~ 120 (205)
.++++|++|++..|-- +.-+..- .+++|++|+-.
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 8999999999887632 2211111 56677776544
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=7.2e-05 Score=65.65 Aligned_cols=90 Identities=28% Similarity=0.296 Sum_probs=43.4
Q ss_pred CcccceeEeecCCCccccchhhccccccceEeccCCCCCcccC--hHHhhcccccceeecCCCccchhhhhhhccccccH
Q 048752 6 DLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIP--PNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASL 83 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp--~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~ 83 (205)
++++|+.||+|+++++.+ .+++.|++|++|.+.+ -.+..-+ .+ +..|++|++||++..+....+.- ..+-.
T Consensus 171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn-Le~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~i----i~qYl 243 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN-LEFESYQDLID-LFNLKKLRVLDISRDKNNDDTKI----IEQYL 243 (699)
T ss_pred ccCccceeecCCCCccCc-HHHhccccHHHHhccC-CCCCchhhHHH-HhcccCCCeeeccccccccchHH----HHHHH
Confidence 455566666666666555 3356666666666555 3333211 12 45566666666655443322210 00011
Q ss_pred HhhcCCCCccEEEEEeeCC
Q 048752 84 EELKHLPNLTSLELDIHDV 102 (205)
Q Consensus 84 ~~l~~l~~L~~L~l~~~~~ 102 (205)
+--..+|+|+.|+.+++.+
T Consensus 244 ec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 244 ECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhcccCccccEEecCCcch
Confidence 2223466666666665544
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.49 E-value=2.6e-05 Score=59.32 Aligned_cols=87 Identities=25% Similarity=0.278 Sum_probs=56.6
Q ss_pred cccceeEeecCCCccccchhhccccccceEeccCC--CCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHH
Q 048752 7 LKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLREC--RKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLE 84 (205)
Q Consensus 7 l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c--~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~ 84 (205)
...|+.|++.+.+++.+-+ +..|++|+.|.++.| .-...++.- ...+++|+++++++|+++.+.. +.
T Consensus 42 ~~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lst---------l~ 110 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLST---------LR 110 (260)
T ss_pred ccchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccc---------cc
Confidence 4556666666666655443 556888888888875 223345543 5566888888888888775332 34
Q ss_pred hhcCCCCccEEEEEeeCCee
Q 048752 85 ELKHLPNLTSLELDIHDVNT 104 (205)
Q Consensus 85 ~l~~l~~L~~L~l~~~~~~~ 104 (205)
.+..+.+|..|++..|..+.
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcchhhhhcccCCccc
Confidence 56677777788777776655
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.37 E-value=9.8e-05 Score=34.46 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=15.2
Q ss_pred cceeEeecCCCccccchhhcc
Q 048752 9 KLEILCLRGSDIKQLPIEVGQ 29 (205)
Q Consensus 9 ~L~~L~l~~~~i~~lp~~i~~ 29 (205)
+|++||+++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467788888877777776554
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.28 E-value=0.00058 Score=56.10 Aligned_cols=50 Identities=18% Similarity=0.359 Sum_probs=38.9
Q ss_pred cceeEeecCC-CccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCc
Q 048752 9 KLEILCLRGS-DIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRS 67 (205)
Q Consensus 9 ~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~ 67 (205)
+|+.|.+++| .++.+|..+. .+|++|++++|..+..+|.+ |++|++..+.
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s-------Le~L~L~~n~ 123 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES-------VRSLEIKGSA 123 (426)
T ss_pred CCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc-------cceEEeCCCC
Confidence 5899999987 7788887663 68999999999788888864 5566665544
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=5.5e-05 Score=58.99 Aligned_cols=148 Identities=18% Similarity=0.170 Sum_probs=93.5
Q ss_pred ccceEeccCCCCCc--ccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcCCCCccEEEEEee-CCeeccCC
Q 048752 32 WLTLLDLRECRKLE--VIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIH-DVNTLPRG 108 (205)
Q Consensus 32 ~L~~L~l~~c~~l~--~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~ 108 (205)
.|+++||+. ..++ .+.. +++.+.+|+.|.+.++++.+--. ..+.+=.+|+.|+++.+ .++.....
T Consensus 186 Rlq~lDLS~-s~it~stl~~-iLs~C~kLk~lSlEg~~LdD~I~----------~~iAkN~~L~~lnlsm~sG~t~n~~~ 253 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHG-ILSQCSKLKNLSLEGLRLDDPIV----------NTIAKNSNLVRLNLSMCSGFTENALQ 253 (419)
T ss_pred hhHHhhcch-hheeHHHHHH-HHHHHHhhhhccccccccCcHHH----------HHHhccccceeeccccccccchhHHH
Confidence 588889987 5555 2333 46778888888888887765333 47777788999999976 56554433
Q ss_pred cCcccccceE---Eeecc---ccccC--CCCCCCcceEEecCccc-----chhhHHHhcCCccEEEeccCchhhHHh-HH
Q 048752 109 LFLEKLGKYR---IRIGD---WYWES--TNIWRSEFRLRLNNKIC-----LKDWLIVQLQGIEDLELRKLQEQDVIY-FA 174 (205)
Q Consensus 109 ~~~~~L~~L~---~~~~~---~~~~~--~~~~~~L~~L~l~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~ 174 (205)
+.+.+++.|+ +.+.. ..+.. ..-.+.++.|.+++... ....+....+++..||+++|. .+++ +.
T Consensus 254 ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v--~l~~~~~ 331 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV--MLKNDCF 331 (419)
T ss_pred HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc--ccCchHH
Confidence 3334444443 33221 11111 11455777777743321 122233368999999999987 5554 34
Q ss_pred HHhhhcCCCCccEEeecCCCC
Q 048752 175 NELVKVGSSQLKFLRIHGCSD 195 (205)
Q Consensus 175 ~~l~~~~~~~L~~L~l~~~~~ 195 (205)
..+ ..|+.|++|.++.|-.
T Consensus 332 ~~~--~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 332 QEF--FKFNYLQHLSLSRCYD 350 (419)
T ss_pred HHH--HhcchheeeehhhhcC
Confidence 455 4899999999999964
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.00072 Score=52.94 Aligned_cols=65 Identities=23% Similarity=0.346 Sum_probs=39.0
Q ss_pred cccceEeccCCCCCcccCh-HHh-hcccccceeecCCCccchhhhhhhccccccHHhhcCCCCccEEEEEeeCCee
Q 048752 31 TWLTLLDLRECRKLEVIPP-NVL-SNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDVNT 104 (205)
Q Consensus 31 ~~L~~L~l~~c~~l~~lp~-~~~-~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 104 (205)
..++.+.+.+|. +..... +.+ +....++.+|+.+|.+..+.. +..-+.+||.|++|+++.|.+..
T Consensus 45 ra~ellvln~~~-id~~gd~~~~~~~~~~v~elDL~~N~iSdWse--------I~~ile~lP~l~~LNls~N~L~s 111 (418)
T KOG2982|consen 45 RALELLVLNGSI-IDNEGDVMLFGSSVTDVKELDLTGNLISDWSE--------IGAILEQLPALTTLNLSCNSLSS 111 (418)
T ss_pred cchhhheecCCC-CCcchhHHHHHHHhhhhhhhhcccchhccHHH--------HHHHHhcCccceEeeccCCcCCC
Confidence 344455566643 222221 113 334567888888888887765 22345788888888888887655
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=8.3e-05 Score=57.49 Aligned_cols=86 Identities=28% Similarity=0.322 Sum_probs=63.2
Q ss_pred ccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccCh-HHhhcccccceeecCCCccchhhhhhhcccccc
Q 048752 4 IGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPP-NVLSNLSHLEELCISRRSFQKWEVEVEGAKNAS 82 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~ 82 (205)
+.+++.|++|.|+=|+|+.+.. +..+++|+.|+|+. |.+..+.+ ..++++++|+.|.+..|.=....+ ..--
T Consensus 37 c~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag-----~nYR 109 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEAG-----QNYR 109 (388)
T ss_pred HHhcccceeEEeeccccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcccccc-----hhHH
Confidence 3489999999999999999876 78999999999999 78887764 236788999999987764322111 1111
Q ss_pred HHhhcCCCCccEEE
Q 048752 83 LEELKHLPNLTSLE 96 (205)
Q Consensus 83 ~~~l~~l~~L~~L~ 96 (205)
..-+..|++|++|+
T Consensus 110 ~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 110 RKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHcccchhcc
Confidence 13556777777764
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.72 E-value=0.0037 Score=42.72 Aligned_cols=91 Identities=16% Similarity=0.272 Sum_probs=47.1
Q ss_pred cccCcccceeEeecCCCccccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
.|.++.+|+.+.+.. .++.++.. +..+++|+.+.+.. + +..++...+..+.+++.+.+.. .+..++.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~-------- 74 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN-N-LTSIGDNAFSNCKSLESITFPN-NLKSIGD-------- 74 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS-T-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T--------
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc-c-ccccceeeeecccccccccccc-ccccccc--------
Confidence 355666777777764 46666655 66777777777766 3 6667766677776777777743 4544554
Q ss_pred cHHhhcCCCCccEEEEEeeCCeeccCC
Q 048752 82 SLEELKHLPNLTSLELDIHDVNTLPRG 108 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~~~~~ 108 (205)
..+..+++|+.+.+..+ +..++..
T Consensus 75 --~~F~~~~~l~~i~~~~~-~~~i~~~ 98 (129)
T PF13306_consen 75 --NAFSNCTNLKNIDIPSN-ITEIGSS 98 (129)
T ss_dssp --TTTTT-TTECEEEETTT--BEEHTT
T ss_pred --ccccccccccccccCcc-ccEEchh
Confidence 45566777777666433 4444443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.71 E-value=0.00099 Score=50.90 Aligned_cols=88 Identities=23% Similarity=0.253 Sum_probs=62.9
Q ss_pred CcccCcccceeEeecCC--Cc-cccchhhccccccceEeccCCCCCc---ccChHHhhcccccceeecCCCccchhhhhh
Q 048752 2 SVIGDLKKLEILCLRGS--DI-KQLPIEVGQLTWLTLLDLRECRKLE---VIPPNVLSNLSHLEELCISRRSFQKWEVEV 75 (205)
Q Consensus 2 ~~i~~l~~L~~L~l~~~--~i-~~lp~~i~~l~~L~~L~l~~c~~l~---~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i 75 (205)
..+-+|++|+.|.++.| ++ ..++.....+++|+++++++ |++. ++++ ...+.+|..|++..|..+.+..
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~p--l~~l~nL~~Ldl~n~~~~~l~d-- 133 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRP--LKELENLKSLDLFNCSVTNLDD-- 133 (260)
T ss_pred ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccch--hhhhcchhhhhcccCCcccccc--
Confidence 34557899999999999 55 35555566679999999999 5554 5655 6788899999998888776433
Q ss_pred hccccccHHhhcCCCCccEEEEEe
Q 048752 76 EGAKNASLEELKHLPNLTSLELDI 99 (205)
Q Consensus 76 ~~~~~~~~~~l~~l~~L~~L~l~~ 99 (205)
..-.-+..+++|..|+-..
T Consensus 134 -----yre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 134 -----YREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred -----HHHHHHHHhhhhccccccc
Confidence 1113456677787765443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.57 E-value=0.0036 Score=42.79 Aligned_cols=95 Identities=12% Similarity=0.233 Sum_probs=56.3
Q ss_pred cccCcccceeEeecCCCccccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
.|..+.+|+.+.+.++ +..++.. +..+.+++.+.+.+ .+..++...+..+.+++.+++..+ +..++.
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~-------- 97 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGS-------- 97 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETTT--BEEHT--------
T ss_pred hccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccccccCcc-ccEEch--------
Confidence 4567778999999875 8888766 88888999999975 567787777888999999999654 666776
Q ss_pred cHHhhcCCCCccEEEEEeeCCeeccCCcCcccc
Q 048752 82 SLEELKHLPNLTSLELDIHDVNTLPRGLFLEKL 114 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L 114 (205)
..+... +|+.+.+.. .+..++.. .|.+.
T Consensus 98 --~~f~~~-~l~~i~~~~-~~~~i~~~-~F~~~ 125 (129)
T PF13306_consen 98 --SSFSNC-NLKEINIPS-NITKIEEN-AFKNC 125 (129)
T ss_dssp --TTTTT--T--EEE-TT-B-SS-----GGG--
T ss_pred --hhhcCC-CceEEEECC-CccEECCc-ccccc
Confidence 567776 888876653 44444444 44443
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.55 E-value=0.0015 Score=28.32 Aligned_cols=16 Identities=31% Similarity=0.519 Sum_probs=7.8
Q ss_pred cceeEeecCCCccccc
Q 048752 9 KLEILCLRGSDIKQLP 24 (205)
Q Consensus 9 ~L~~L~l~~~~i~~lp 24 (205)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666666554
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.51 E-value=0.0016 Score=28.24 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=10.4
Q ss_pred CCccEEeecCCCCCCCCC
Q 048752 183 SQLKFLRIHGCSDALNPP 200 (205)
Q Consensus 183 ~~L~~L~l~~~~~l~~lp 200 (205)
++|+.|++++|. ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 478888888888 77776
No 69
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.17 E-value=0.012 Score=48.26 Aligned_cols=40 Identities=15% Similarity=0.040 Sum_probs=22.7
Q ss_pred ccccccceEeccCCCCCcccChH-HhhcccccceeecCCCc
Q 048752 28 GQLTWLTLLDLRECRKLEVIPPN-VLSNLSHLEELCISRRS 67 (205)
Q Consensus 28 ~~l~~L~~L~l~~c~~l~~lp~~-~~~~l~~L~~L~l~~~~ 67 (205)
..+..|++++.++|+.+...+.. .....++|+.+-+.+|+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence 34566677777766655543321 23445666777666665
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.93 E-value=0.0021 Score=29.83 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=9.9
Q ss_pred ccceEeccCCCCCcccChH
Q 048752 32 WLTLLDLRECRKLEVIPPN 50 (205)
Q Consensus 32 ~L~~L~l~~c~~l~~lp~~ 50 (205)
+|++||+++| .++.+|++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp TESEEEETSS-EESEEGTT
T ss_pred CccEEECCCC-cCEeCChh
Confidence 3556666664 44555554
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.65 E-value=0.022 Score=44.39 Aligned_cols=165 Identities=14% Similarity=0.045 Sum_probs=83.0
Q ss_pred hhhccccccceEeccCCCCCcccCh---HHhhcccccceeecCCCccchhhhhhhccccc------cHHhhcCCCCccEE
Q 048752 25 IEVGQLTWLTLLDLRECRKLEVIPP---NVLSNLSHLEELCISRRSFQKWEVEVEGAKNA------SLEELKHLPNLTSL 95 (205)
Q Consensus 25 ~~i~~l~~L~~L~l~~c~~l~~lp~---~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~------~~~~l~~l~~L~~L 95 (205)
+.+-++++|+..+|++|..-...|+ +.++.-..|.||.+++|.+--+.. +..+. .-.-...-|.|++.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG---~rigkal~~la~nKKaa~kp~Le~v 162 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG---GRIGKALFHLAYNKKAADKPKLEVV 162 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccch---hHHHHHHHHHHHHhhhccCCCceEE
Confidence 3455677788888877433333443 234555677777777765532222 11111 11233455778877
Q ss_pred EEEeeCCeeccCCc-----Cc-ccccceEEeeccccccC----------CCCCCCcceEEecCcccch---hhHHH---h
Q 048752 96 ELDIHDVNTLPRGL-----FL-EKLGKYRIRIGDWYWES----------TNIWRSEFRLRLNNKICLK---DWLIV---Q 153 (205)
Q Consensus 96 ~l~~~~~~~~~~~~-----~~-~~L~~L~~~~~~~~~~~----------~~~~~~L~~L~l~~~~~~~---~~~~~---~ 153 (205)
.+..|++...+... .+ .+++.+++. .+.+.+ ...+.+|+.|++..+.... ..++. .
T Consensus 163 icgrNRlengs~~~~a~~l~sh~~lk~vki~--qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~ 240 (388)
T COG5238 163 ICGRNRLENGSKELSAALLESHENLKEVKIQ--QNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE 240 (388)
T ss_pred EeccchhccCcHHHHHHHHHhhcCceeEEee--ecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence 77777776654432 11 234444443 222211 1256677778874442211 11221 2
Q ss_pred cCCccEEEeccCch--hhHHhHHHHhhhcCCCCccEEeecCCC
Q 048752 154 LQGIEDLELRKLQE--QDVIYFANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 154 ~~~L~~L~l~~~~~--~~~~~~~~~l~~~~~~~L~~L~l~~~~ 194 (205)
-+.|+.|.+..|-. ....++...++....|+|+.|...+|.
T Consensus 241 W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 241 WNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred cchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 34577777777630 122333333322245777777776664
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.27 E-value=0.014 Score=47.87 Aligned_cols=178 Identities=23% Similarity=0.216 Sum_probs=91.7
Q ss_pred CcccceeEeecCC-Cc--cccchhhccccccceEeccCCCCCcccCh-HHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 6 DLKKLEILCLRGS-DI--KQLPIEVGQLTWLTLLDLRECRKLEVIPP-NVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 6 ~l~~L~~L~l~~~-~i--~~lp~~i~~l~~L~~L~l~~c~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
++..++.+.++|| .. +.+-..-....-+..+++..|+.++...- .+-..+..|++++.+++.. ++..
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~--~~d~------- 310 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD--ITDE------- 310 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC--CchH-------
Confidence 3445566666666 11 22222223445566667777776665431 1234566788888766543 2221
Q ss_pred cHHhh-cCCCCccEEEEEeeC-Cee-----ccCCcCcccccceEEe-ecc---ccccC-CCCCCCcceEEecCcc-cchh
Q 048752 82 SLEEL-KHLPNLTSLELDIHD-VNT-----LPRGLFLEKLGKYRIR-IGD---WYWES-TNIWRSEFRLRLNNKI-CLKD 148 (205)
Q Consensus 82 ~~~~l-~~l~~L~~L~l~~~~-~~~-----~~~~~~~~~L~~L~~~-~~~---~~~~~-~~~~~~L~~L~l~~~~-~~~~ 148 (205)
.+.++ .+..+|+.|.+++++ ++. +.. .-+.|+.+..- .+- -.+.. ...++.++.+.++... ....
T Consensus 311 ~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r--n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 311 VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR--NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred HHHHHhcCCCceEEEeccccchhhhhhhhhhhc--CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh
Confidence 12344 366788888888774 222 111 11334443333 111 11222 2367777777774211 1111
Q ss_pred hH------HHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCC
Q 048752 149 WL------IVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDAL 197 (205)
Q Consensus 149 ~~------~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~ 197 (205)
++ ......++.+++++|+ .+++...... ..+++|+.+++-+|..++
T Consensus 389 gi~~l~~~~c~~~~l~~lEL~n~p--~i~d~~Le~l-~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 389 GIRHLSSSSCSLEGLEVLELDNCP--LITDATLEHL-SICRNLERIELIDCQDVT 440 (483)
T ss_pred hhhhhhhccccccccceeeecCCC--CchHHHHHHH-hhCcccceeeeechhhhh
Confidence 11 1245677888888887 6665433322 467788888887776553
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.26 E-value=0.013 Score=28.22 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=9.0
Q ss_pred ccceeEeecCCCccccchh
Q 048752 8 KKLEILCLRGSDIKQLPIE 26 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~~ 26 (205)
++|++|++++|+|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3444455555555444443
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.26 E-value=0.013 Score=28.22 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=9.0
Q ss_pred ccceeEeecCCCccccchh
Q 048752 8 KKLEILCLRGSDIKQLPIE 26 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~~ 26 (205)
++|++|++++|+|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3444455555555444443
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.09 E-value=0.00097 Score=50.47 Aligned_cols=85 Identities=18% Similarity=0.249 Sum_probs=59.6
Q ss_pred ccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccH
Q 048752 4 IGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASL 83 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~ 83 (205)
|......++||++.+++..+-..++.++.|..|+++. +.+..+|++ +..+..+.+++...|...+.|.
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p~---------- 105 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKD-AKQQRETVNAASHKNNHSQQPK---------- 105 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhh-HHHHHHHHHHHhhccchhhCCc----------
Confidence 3445566777777777766666677777777777777 677777777 7777777777777777766665
Q ss_pred HhhcCCCCccEEEEEeeC
Q 048752 84 EELKHLPNLTSLELDIHD 101 (205)
Q Consensus 84 ~~l~~l~~L~~L~l~~~~ 101 (205)
.++..+.++.++.-++.
T Consensus 106 -s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 106 -SQKKEPHPKKNEQKKTE 122 (326)
T ss_pred -cccccCCcchhhhccCc
Confidence 66777777776666654
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.98 E-value=0.023 Score=27.29 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=13.6
Q ss_pred ccccceEeccCCCCCcccChHHh
Q 048752 30 LTWLTLLDLRECRKLEVIPPNVL 52 (205)
Q Consensus 30 l~~L~~L~l~~c~~l~~lp~~~~ 52 (205)
|++|++|++++ +.++.+|+++|
T Consensus 1 L~~L~~L~L~~-N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSN-NQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCC-CcCCcCCHHHc
Confidence 35666677766 56666666533
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.98 E-value=0.023 Score=27.29 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=13.6
Q ss_pred ccccceEeccCCCCCcccChHHh
Q 048752 30 LTWLTLLDLRECRKLEVIPPNVL 52 (205)
Q Consensus 30 l~~L~~L~l~~c~~l~~lp~~~~ 52 (205)
|++|++|++++ +.++.+|+++|
T Consensus 1 L~~L~~L~L~~-N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSN-NQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCC-CcCCcCCHHHc
Confidence 35666677766 56666666533
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.64 E-value=0.044 Score=45.96 Aligned_cols=68 Identities=24% Similarity=0.177 Sum_probs=41.7
Q ss_pred hccccccceEeccCCCCCcccC-hHHhhcccccceeecCCC-cc-chhhhhhhccccccHHhhcCCCCccEEEEEeeC
Q 048752 27 VGQLTWLTLLDLRECRKLEVIP-PNVLSNLSHLEELCISRR-SF-QKWEVEVEGAKNASLEELKHLPNLTSLELDIHD 101 (205)
Q Consensus 27 i~~l~~L~~L~l~~c~~l~~lp-~~~~~~l~~L~~L~l~~~-~~-~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~ 101 (205)
....+.|+.+.+.+|..+.... ..+....++|+.|+++++ .. ...+. ........+.+|+.|+++++.
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL-------LLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh-------HhhhhhhhcCCcCccchhhhh
Confidence 3347888888888887777532 123677888999988763 11 11111 001233456778888887765
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.43 E-value=0.024 Score=42.06 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=31.2
Q ss_pred cccceEeccCCCCCcccChHHhhcccccceeecCCCccch-hhhhhhccccccHHhhc-CCCCccEEEEEee-CCee
Q 048752 31 TWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQK-WEVEVEGAKNASLEELK-HLPNLTSLELDIH-DVNT 104 (205)
Q Consensus 31 ~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~-~~~~i~~~~~~~~~~l~-~l~~L~~L~l~~~-~~~~ 104 (205)
..++.+|-++ ..+....-+-+..++.++.|.+..|.-.. +. ++.++ ..++|+.|++++| .|++
T Consensus 101 ~~IeaVDAsd-s~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~----------L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 101 VKIEAVDASD-SSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC----------LERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred ceEEEEecCC-chHHHHHHHHHhccchhhhheeccccchhhHH----------HHHhcccccchheeeccCCCeech
Confidence 4455666666 33333332225556666666665554321 11 13332 3456777777765 4544
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.49 E-value=0.15 Score=37.89 Aligned_cols=60 Identities=23% Similarity=0.195 Sum_probs=33.6
Q ss_pred CCCCcceEEecCcccchhh----HHHhcCCccEEEeccCchhhHHhH-HHHhhhcCCCCccEEeecCCC
Q 048752 131 IWRSEFRLRLNNKICLKDW----LIVQLQGIEDLELRKLQEQDVIYF-ANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 131 ~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~~~~~~L~~L~l~~~~ 194 (205)
.+.+++.|+++.......| ++...++|+.|++++|. .+++- ...+ ..+++|+.|.+.+-+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~--rIT~~GL~~L--~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP--RITDGGLACL--LKLKNLRRLHLYDLP 187 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCC--eechhHHHHH--HHhhhhHHHHhcCch
Confidence 4555566666544443333 22245677777777776 66553 2333 366677777666644
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=91.96 E-value=0.11 Score=25.08 Aligned_cols=18 Identities=22% Similarity=0.253 Sum_probs=15.7
Q ss_pred CCccEEeecCCCCCCCCCC
Q 048752 183 SQLKFLRIHGCSDALNPPA 201 (205)
Q Consensus 183 ~~L~~L~l~~~~~l~~lp~ 201 (205)
++|+.|++++|. ++++|+
T Consensus 2 ~~L~~L~vs~N~-Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQ-LTSLPE 19 (26)
T ss_pred cccceeecCCCc-cccCcc
Confidence 578999999998 999986
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.40 E-value=0.13 Score=24.61 Aligned_cols=17 Identities=24% Similarity=0.632 Sum_probs=13.1
Q ss_pred CCCccEEeecCCCCCCC
Q 048752 182 SSQLKFLRIHGCSDALN 198 (205)
Q Consensus 182 ~~~L~~L~l~~~~~l~~ 198 (205)
+++|+.|++++|+.++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 47888888888887653
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.95 E-value=0.011 Score=44.97 Aligned_cols=66 Identities=18% Similarity=0.115 Sum_probs=57.9
Q ss_pred cccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccch
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQK 70 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~ 70 (205)
.++.++.+..||++.+.+..+|..++.+..++.+++.. +.....|.+ +..++++++++..++.++.
T Consensus 60 n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s-~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 60 NFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKS-QKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred chHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCcc-ccccCCcchhhhccCcchH
Confidence 35567888999999999999999999999999999988 678999998 9999999999998887654
No 84
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.37 E-value=0.36 Score=40.41 Aligned_cols=87 Identities=26% Similarity=0.255 Sum_probs=48.3
Q ss_pred CcccceeEeecCC--Ccccc----chhhccccccceEeccCCCCCcccChHHh-hcccccceeecCCCc-cchhhhhhhc
Q 048752 6 DLKKLEILCLRGS--DIKQL----PIEVGQLTWLTLLDLRECRKLEVIPPNVL-SNLSHLEELCISRRS-FQKWEVEVEG 77 (205)
Q Consensus 6 ~l~~L~~L~l~~~--~i~~l----p~~i~~l~~L~~L~l~~c~~l~~lp~~~~-~~l~~L~~L~l~~~~-~~~~~~~i~~ 77 (205)
.+++|+.|+++++ .+... ......+.+|+.++++.|..+....-..+ ..+++|++|.+.+|. ++...-
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl---- 287 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL---- 287 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH----
Confidence 4667777777762 22211 12234457777777777654443332222 336677777766665 343222
Q ss_pred cccccHHhhcCCCCccEEEEEeeC
Q 048752 78 AKNASLEELKHLPNLTSLELDIHD 101 (205)
Q Consensus 78 ~~~~~~~~l~~l~~L~~L~l~~~~ 101 (205)
......++.|+.|+++++.
T Consensus 288 -----~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 288 -----VSIAERCPSLRELDLSGCH 306 (482)
T ss_pred -----HHHHHhcCcccEEeeecCc
Confidence 1233567778888888763
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.42 E-value=0.34 Score=23.39 Aligned_cols=16 Identities=38% Similarity=0.465 Sum_probs=9.1
Q ss_pred ccceeEeecCCCcccc
Q 048752 8 KKLEILCLRGSDIKQL 23 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~l 23 (205)
.+|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666655433
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.09 E-value=0.3 Score=22.74 Aligned_cols=13 Identities=38% Similarity=0.462 Sum_probs=6.4
Q ss_pred ccceeEeecCCCc
Q 048752 8 KKLEILCLRGSDI 20 (205)
Q Consensus 8 ~~L~~L~l~~~~i 20 (205)
++|+.|++++|+|
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 4556666666655
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=77.92 E-value=1.5 Score=21.29 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=7.8
Q ss_pred ccceeEeecCCCc
Q 048752 8 KKLEILCLRGSDI 20 (205)
Q Consensus 8 ~~L~~L~l~~~~i 20 (205)
++|++|||++|.|
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 3566666666655
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=56.93 E-value=0.77 Score=39.07 Aligned_cols=89 Identities=30% Similarity=0.275 Sum_probs=46.8
Q ss_pred cccceeEeecCCCccc-----cchhhccccc-cceEeccCCCCCc-----ccChHHhhcc-cccceeecCCCccchhhhh
Q 048752 7 LKKLEILCLRGSDIKQ-----LPIEVGQLTW-LTLLDLRECRKLE-----VIPPNVLSNL-SHLEELCISRRSFQKWEVE 74 (205)
Q Consensus 7 l~~L~~L~l~~~~i~~-----lp~~i~~l~~-L~~L~l~~c~~l~-----~lp~~~~~~l-~~L~~L~l~~~~~~~~~~~ 74 (205)
..++++|.+++|.++. +-..+...+. ++.+++.. +.+. .+.+. +..+ +.+++++++.|++.+...
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~~~- 279 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS-NKLGDVGVEKLLPC-LSVLSETLRVLDLSRNSITEKGV- 279 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh-cCcchHHHHHHHHH-hcccchhhhhhhhhcCCccccch-
Confidence 4556666666665531 1112333444 44566655 2322 23333 4455 566777777777765443
Q ss_pred hhccccccHHhhcCCCCccEEEEEeeCCe
Q 048752 75 VEGAKNASLEELKHLPNLTSLELDIHDVN 103 (205)
Q Consensus 75 i~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 103 (205)
....+.+..+++++++.++.|.+.
T Consensus 280 -----~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 280 -----RDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred -----HHHHHHHhhhHHHHHhhcccCccc
Confidence 112245556667777777776553
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.47 E-value=16 Score=31.68 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=30.4
Q ss_pred cccceeEeecCCCcc---ccchhhccccccceEeccCCC-CCcccChHHhhc--ccccceeecCCCccc
Q 048752 7 LKKLEILCLRGSDIK---QLPIEVGQLTWLTLLDLRECR-KLEVIPPNVLSN--LSHLEELCISRRSFQ 69 (205)
Q Consensus 7 l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~c~-~l~~lp~~~~~~--l~~L~~L~l~~~~~~ 69 (205)
-+.+..+.|++|++. .+..-....++|+.|+|++|. .+...++ +.+ ...|+.|.+.+|.+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e--l~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE--LDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhh--hhhhcCCCHHHeeecCCccc
Confidence 345556666666553 333334456667777777631 2222221 222 224666666666654
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.50 E-value=17 Score=31.46 Aligned_cols=64 Identities=17% Similarity=0.138 Sum_probs=42.6
Q ss_pred hccccccceEeccCCCCCcccCh--HHhhcccccceeecCCC--ccchhhhhhhccccccHHhhcC--CCCccEEEEEee
Q 048752 27 VGQLTWLTLLDLRECRKLEVIPP--NVLSNLSHLEELCISRR--SFQKWEVEVEGAKNASLEELKH--LPNLTSLELDIH 100 (205)
Q Consensus 27 i~~l~~L~~L~l~~c~~l~~lp~--~~~~~l~~L~~L~l~~~--~~~~~~~~i~~~~~~~~~~l~~--l~~L~~L~l~~~ 100 (205)
-.+.+.+..+.+++ |++..+.. .+.+..++|+.|+|++| .+... .++.+ ...|++|.+.||
T Consensus 214 ~~n~p~i~sl~lsn-NrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~------------~el~K~k~l~Leel~l~GN 280 (585)
T KOG3763|consen 214 EENFPEILSLSLSN-NRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE------------SELDKLKGLPLEELVLEGN 280 (585)
T ss_pred hcCCcceeeeeccc-chhhchhhhhHHHHhcchhheeecccchhhhcch------------hhhhhhcCCCHHHeeecCC
Confidence 34677888888998 77777653 23566789999999998 33322 23332 235778888887
Q ss_pred CCe
Q 048752 101 DVN 103 (205)
Q Consensus 101 ~~~ 103 (205)
.+.
T Consensus 281 Plc 283 (585)
T KOG3763|consen 281 PLC 283 (585)
T ss_pred ccc
Confidence 654
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=41.09 E-value=21 Score=37.01 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=20.2
Q ss_pred eecCCCccccchh-hccccccceEeccCC
Q 048752 14 CLRGSDIKQLPIE-VGQLTWLTLLDLREC 41 (205)
Q Consensus 14 ~l~~~~i~~lp~~-i~~l~~L~~L~l~~c 41 (205)
||++|+|+.+|.. |..+.+|+.|+|++|
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgN 29 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGN 29 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCC
Confidence 5677777777765 677777777777773
No 92
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=34.50 E-value=20 Score=17.20 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=10.3
Q ss_pred HhhcccccceeecC
Q 048752 51 VLSNLSHLEELCIS 64 (205)
Q Consensus 51 ~~~~l~~L~~L~l~ 64 (205)
++..+++|+.||..
T Consensus 8 Vi~~LPqL~~LD~~ 21 (26)
T smart00446 8 VIRLLPQLRKLDXX 21 (26)
T ss_pred HHHHCCccceeccc
Confidence 46778888888763
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.28 E-value=62 Score=33.92 Aligned_cols=32 Identities=28% Similarity=0.529 Sum_probs=27.7
Q ss_pred eccCCCCCcccChHHhhcccccceeecCCCccc
Q 048752 37 DLRECRKLEVIPPNVLSNLSHLEELCISRRSFQ 69 (205)
Q Consensus 37 ~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 69 (205)
||++ |.++.+|++.|..|++|+.|+|.+|...
T Consensus 1 DLSn-N~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISN-NKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCC-CcCCccChHHhccCCCceEEEeeCCccc
Confidence 5777 8899999998999999999999988654
Done!