Query 048752
Match_columns 205
No_of_seqs 115 out of 1526
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 22:25:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 1.4E-22 4.8E-27 161.2 9.1 189 4-203 100-297 (328)
2 4fcg_A Uncharacterized protein 99.8 1.4E-20 4.8E-25 149.6 12.3 179 7-203 80-273 (328)
3 1ozn_A Reticulon 4 receptor; N 99.8 6.2E-20 2.1E-24 142.8 11.6 176 3-194 51-236 (285)
4 2z80_A TOLL-like receptor 2, v 99.8 4.8E-19 1.7E-23 141.8 16.0 187 3-203 71-296 (353)
5 3zyi_A Leucine-rich repeat-con 99.8 1.4E-19 4.7E-24 149.6 12.4 180 4-202 95-284 (452)
6 3zyj_A Leucine-rich repeat-con 99.8 1.4E-19 4.7E-24 149.1 11.8 182 3-202 83-273 (440)
7 2o6q_A Variable lymphocyte rec 99.8 2.9E-19 1E-23 138.2 10.8 170 8-194 37-216 (270)
8 2xwt_C Thyrotropin receptor; s 99.8 2.5E-19 8.5E-24 136.1 9.7 180 8-202 31-223 (239)
9 2z80_A TOLL-like receptor 2, v 99.8 1.8E-19 6.3E-24 144.3 9.3 177 3-196 95-314 (353)
10 3rfs_A Internalin B, repeat mo 99.8 3.3E-19 1.1E-23 138.1 10.3 176 5-200 38-222 (272)
11 1xku_A Decorin; proteoglycan, 99.8 1.4E-18 4.8E-23 137.8 12.8 108 85-202 166-281 (330)
12 3o6n_A APL1; leucine-rich repe 99.8 6.9E-19 2.4E-23 142.6 10.7 67 6-73 67-134 (390)
13 2id5_A Lingo-1, leucine rich r 99.8 7.6E-19 2.6E-23 145.9 11.2 181 3-201 51-265 (477)
14 1h6u_A Internalin H; cell adhe 99.8 9E-19 3.1E-23 138.0 11.0 172 3-201 58-234 (308)
15 1p9a_G Platelet glycoprotein I 99.8 1.1E-18 3.7E-23 136.5 10.9 177 4-203 6-191 (290)
16 1xku_A Decorin; proteoglycan, 99.8 2.4E-18 8.1E-23 136.5 12.8 179 3-203 71-259 (330)
17 3oja_B Anopheles plasmodium-re 99.8 5.4E-19 1.8E-23 150.8 9.4 91 6-107 73-164 (597)
18 3oja_B Anopheles plasmodium-re 99.8 5.9E-19 2E-23 150.6 9.6 93 3-106 94-187 (597)
19 1ogq_A PGIP-2, polygalacturona 99.8 2.6E-19 8.8E-24 141.4 6.7 180 3-201 71-286 (313)
20 1ozn_A Reticulon 4 receptor; N 99.8 1.7E-18 6E-23 134.6 10.7 176 7-201 31-218 (285)
21 2id5_A Lingo-1, leucine rich r 99.8 1.7E-18 6E-23 143.7 10.6 190 3-200 75-288 (477)
22 2xwt_C Thyrotropin receptor; s 99.8 1.1E-18 3.9E-23 132.4 7.9 172 3-195 50-238 (239)
23 3zyi_A Leucine-rich repeat-con 99.8 2.4E-18 8.2E-23 142.2 10.2 175 8-201 75-259 (452)
24 3m19_A Variable lymphocyte rec 99.8 2.9E-18 9.9E-23 131.2 9.2 167 9-194 15-190 (251)
25 2z66_A Variable lymphocyte rec 99.8 3.1E-18 1E-22 134.5 9.6 178 8-194 28-234 (306)
26 3zyj_A Leucine-rich repeat-con 99.8 3.7E-18 1.3E-22 140.6 10.5 176 8-202 64-249 (440)
27 2o6q_A Variable lymphocyte rec 99.7 6.3E-18 2.2E-22 130.6 10.9 174 9-202 17-199 (270)
28 2z62_A TOLL-like receptor 4, v 99.7 4.4E-18 1.5E-22 131.8 9.9 123 9-143 29-159 (276)
29 2ft3_A Biglycan; proteoglycan, 99.7 3.6E-18 1.2E-22 135.6 9.2 176 3-202 73-282 (332)
30 1p9a_G Platelet glycoprotein I 99.7 2.9E-18 1E-22 134.0 8.2 168 8-195 31-207 (290)
31 2ft3_A Biglycan; proteoglycan, 99.7 3E-18 1E-22 136.1 8.2 174 8-203 54-260 (332)
32 1ogq_A PGIP-2, polygalacturona 99.7 8.2E-19 2.8E-23 138.5 4.8 188 3-200 96-308 (313)
33 3rgz_A Protein brassinosteroid 99.7 6.5E-18 2.2E-22 148.0 10.7 43 154-200 679-721 (768)
34 2z62_A TOLL-like receptor 4, v 99.7 3.8E-18 1.3E-22 132.1 7.7 176 3-195 47-236 (276)
35 3o6n_A APL1; leucine-rich repe 99.7 4.6E-18 1.6E-22 137.8 8.0 175 6-199 43-263 (390)
36 3rgz_A Protein brassinosteroid 99.7 9.9E-18 3.4E-22 146.8 10.1 183 3-202 437-699 (768)
37 2z66_A Variable lymphocyte rec 99.7 8.5E-18 2.9E-22 132.0 8.4 182 10-201 9-216 (306)
38 1h6u_A Internalin H; cell adhe 99.7 1.5E-17 5E-22 131.0 9.6 169 5-200 38-211 (308)
39 3rfs_A Internalin B, repeat mo 99.7 1.2E-17 3.9E-22 129.3 8.7 173 7-202 18-199 (272)
40 3vq2_A TLR4, TOLL-like recepto 99.7 1.1E-17 3.9E-22 142.5 9.3 180 4-202 346-539 (606)
41 4fmz_A Internalin; leucine ric 99.7 9E-17 3.1E-21 128.1 13.8 186 4-201 128-328 (347)
42 1wwl_A Monocyte differentiatio 99.7 2.5E-18 8.4E-23 135.6 4.6 64 7-72 94-165 (312)
43 4eco_A Uncharacterized protein 99.7 9.4E-18 3.2E-22 144.2 8.3 121 3-126 268-414 (636)
44 4fmz_A Internalin; leucine ric 99.7 4.8E-17 1.7E-21 129.6 11.7 100 2-106 60-171 (347)
45 3o53_A Protein LRIM1, AGAP0063 99.7 4.5E-18 1.5E-22 134.4 5.3 185 6-202 32-232 (317)
46 1h6t_A Internalin B; cell adhe 99.7 1.7E-17 5.7E-22 129.8 8.4 170 4-200 42-216 (291)
47 4eco_A Uncharacterized protein 99.7 2.4E-17 8.3E-22 141.6 10.1 192 3-203 348-585 (636)
48 2z81_A CD282 antigen, TOLL-lik 99.7 7.1E-17 2.4E-21 136.0 12.5 175 8-199 26-211 (549)
49 1wwl_A Monocyte differentiatio 99.7 5E-18 1.7E-22 133.9 5.1 175 5-198 118-310 (312)
50 4ecn_A Leucine-rich repeat pro 99.7 3.8E-17 1.3E-21 144.3 11.2 145 8-166 548-708 (876)
51 1o6v_A Internalin A; bacterial 99.7 1.7E-16 5.7E-21 131.6 14.5 89 2-106 62-150 (466)
52 3v47_A TOLL-like receptor 5B a 99.7 7.4E-17 2.5E-21 133.0 12.2 108 4-120 50-159 (455)
53 2z81_A CD282 antigen, TOLL-lik 99.7 1.4E-16 4.9E-21 134.1 13.8 153 3-166 45-207 (549)
54 3m19_A Variable lymphocyte rec 99.7 4.5E-17 1.5E-21 124.6 9.3 151 31-202 14-173 (251)
55 4ay9_X Follicle-stimulating ho 99.7 3.1E-17 1E-21 131.4 8.7 179 8-202 30-220 (350)
56 3oja_A Leucine-rich immune mol 99.7 1.1E-17 3.9E-22 139.5 6.3 185 6-202 32-232 (487)
57 4ecn_A Leucine-rich repeat pro 99.7 1.7E-17 5.7E-22 146.5 7.6 158 3-166 443-630 (876)
58 3t6q_A CD180 antigen; protein- 99.7 5E-17 1.7E-21 138.5 10.1 188 4-200 274-492 (606)
59 3v47_A TOLL-like receptor 5B a 99.7 9.2E-17 3.2E-21 132.4 11.2 68 3-71 98-169 (455)
60 4ezg_A Putative uncharacterize 99.7 2E-17 6.7E-22 122.1 6.2 152 5-197 41-194 (197)
61 2v9t_B SLIT homolog 2 protein 99.7 4.1E-17 1.4E-21 122.6 8.0 103 11-127 14-117 (220)
62 4g8a_A TOLL-like receptor 4; l 99.7 3.3E-17 1.1E-21 139.7 7.9 170 8-194 52-235 (635)
63 3t6q_A CD180 antigen; protein- 99.7 1.5E-16 5.3E-21 135.5 11.4 177 6-200 348-539 (606)
64 3vq2_A TLR4, TOLL-like recepto 99.7 4.1E-17 1.4E-21 139.0 7.6 175 4-196 372-558 (606)
65 2o6s_A Variable lymphocyte rec 99.7 4.1E-17 1.4E-21 121.2 6.2 101 8-120 28-129 (208)
66 2z7x_B TOLL-like receptor 1, v 99.7 1.2E-15 4E-20 127.9 15.4 69 130-202 321-393 (520)
67 3e6j_A Variable lymphocyte rec 99.7 1.8E-16 6.1E-21 119.7 8.6 97 10-120 21-117 (229)
68 3o53_A Protein LRIM1, AGAP0063 99.7 9.3E-17 3.2E-21 126.8 6.8 174 3-194 53-248 (317)
69 1o6v_A Internalin A; bacterial 99.7 4.5E-16 1.5E-20 129.0 10.9 62 131-200 329-391 (466)
70 2z7x_B TOLL-like receptor 1, v 99.7 7E-16 2.4E-20 129.2 12.2 150 28-194 321-479 (520)
71 1m9s_A Internalin B; cell inva 99.7 1.2E-16 4.1E-21 136.4 7.5 170 5-201 40-214 (605)
72 3bz5_A Internalin-J, INLJ; leu 99.7 6E-16 2E-20 128.1 11.0 60 6-70 40-99 (457)
73 1ziw_A TOLL-like receptor 3; i 99.7 5.1E-16 1.8E-20 134.0 10.9 186 8-200 381-600 (680)
74 3bz5_A Internalin-J, INLJ; leu 99.6 3.2E-16 1.1E-20 129.8 9.1 167 2-200 58-228 (457)
75 2o6s_A Variable lymphocyte rec 99.6 5.7E-16 2E-20 115.0 9.3 142 10-166 9-159 (208)
76 2ell_A Acidic leucine-rich nuc 99.6 2.7E-16 9.1E-21 113.0 7.2 139 7-204 23-167 (168)
77 1xeu_A Internalin C; cellular 99.6 1.4E-16 5E-21 122.7 5.7 167 6-200 17-188 (263)
78 3oja_A Leucine-rich immune mol 99.6 1.8E-16 6.2E-21 132.2 6.7 174 3-195 53-249 (487)
79 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 3.4E-15 1.2E-19 126.4 14.6 66 3-72 71-137 (562)
80 2v70_A SLIT-2, SLIT homolog 2 99.6 3.3E-16 1.1E-20 117.6 7.4 105 10-128 13-119 (220)
81 2z63_A TOLL-like receptor 4, v 99.6 3.8E-16 1.3E-20 132.0 8.1 179 5-200 344-535 (570)
82 1ziw_A TOLL-like receptor 3; i 99.6 7.9E-16 2.7E-20 132.8 10.1 170 8-194 25-206 (680)
83 2xot_A Amphoterin-induced prot 99.6 4E-16 1.4E-20 125.4 7.7 166 11-194 21-200 (361)
84 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 8.8E-16 3E-20 130.0 9.3 151 28-195 350-509 (562)
85 2xot_A Amphoterin-induced prot 99.6 8.1E-16 2.8E-20 123.6 8.5 149 33-201 20-180 (361)
86 4glp_A Monocyte differentiatio 99.6 2.2E-16 7.4E-21 124.3 4.3 31 10-40 93-126 (310)
87 3j0a_A TOLL-like receptor 5; m 99.6 1.1E-15 3.9E-20 135.1 9.3 173 7-194 23-215 (844)
88 2z63_A TOLL-like receptor 4, v 99.6 9.2E-16 3.2E-20 129.6 7.4 169 8-194 28-211 (570)
89 3g06_A SSPH2 (leucine-rich rep 99.6 3.9E-15 1.3E-19 127.4 11.0 39 154-201 240-278 (622)
90 3j0a_A TOLL-like receptor 5; m 99.6 3.2E-15 1.1E-19 132.2 10.8 173 8-197 266-464 (844)
91 1h6t_A Internalin B; cell adhe 99.6 4.9E-15 1.7E-19 115.7 10.5 145 2-166 62-211 (291)
92 4glp_A Monocyte differentiatio 99.6 1.6E-16 5.5E-21 125.0 2.0 174 5-198 114-308 (310)
93 2v9t_B SLIT homolog 2 protein 99.6 2.8E-15 9.7E-20 112.5 8.7 124 8-143 32-162 (220)
94 1jl5_A Outer protein YOPM; leu 99.6 3E-15 1E-19 123.8 9.2 128 4-141 149-285 (454)
95 4g8a_A TOLL-like receptor 4; l 99.6 2.5E-15 8.6E-20 128.1 8.4 173 3-191 71-257 (635)
96 4ay9_X Follicle-stimulating ho 99.6 2.8E-15 9.5E-20 120.0 8.0 180 3-201 49-241 (350)
97 3e6j_A Variable lymphocyte rec 99.6 4.3E-15 1.5E-19 112.1 8.5 109 7-128 39-149 (229)
98 2v70_A SLIT-2, SLIT homolog 2 99.6 5.5E-15 1.9E-19 110.9 8.5 122 8-141 32-161 (220)
99 3g06_A SSPH2 (leucine-rich rep 99.6 6.2E-15 2.1E-19 126.1 9.8 173 7-194 80-295 (622)
100 2ast_B S-phase kinase-associat 99.6 2.5E-15 8.4E-20 119.2 6.5 173 4-193 89-282 (336)
101 2wfh_A SLIT homolog 2 protein 99.6 7.8E-15 2.7E-19 107.9 8.4 124 11-166 13-137 (193)
102 2ast_B S-phase kinase-associat 99.6 3.2E-15 1.1E-19 118.5 6.5 169 8-195 70-259 (336)
103 1a9n_A U2A', U2A'; complex (nu 99.6 3.3E-15 1.1E-19 108.2 5.7 131 3-166 14-151 (176)
104 2je0_A Acidic leucine-rich nuc 99.6 4.6E-15 1.6E-19 104.4 6.2 129 6-192 15-149 (149)
105 1jl5_A Outer protein YOPM; leu 99.6 2E-14 6.9E-19 118.9 10.6 40 31-73 131-170 (454)
106 2ca6_A RAN GTPase-activating p 99.5 9.1E-15 3.1E-19 118.3 8.3 190 4-198 56-317 (386)
107 4ezg_A Putative uncharacterize 99.5 3.3E-14 1.1E-18 104.7 9.9 130 2-166 60-192 (197)
108 1xeu_A Internalin C; cellular 99.5 7.5E-15 2.6E-19 113.1 6.7 142 4-166 37-183 (263)
109 2ca6_A RAN GTPase-activating p 99.5 1.3E-14 4.5E-19 117.3 8.3 94 4-103 28-135 (386)
110 1m9s_A Internalin B; cell inva 99.5 3E-14 1E-18 121.6 10.5 145 2-166 59-208 (605)
111 1w8a_A SLIT protein; signaling 99.5 1.6E-14 5.4E-19 106.1 7.3 126 10-166 10-137 (192)
112 2wfh_A SLIT homolog 2 protein 99.5 1.7E-14 5.9E-19 106.1 7.5 107 8-126 31-138 (193)
113 1dce_A Protein (RAB geranylger 99.5 2.3E-16 8E-21 133.7 -3.0 184 4-202 345-551 (567)
114 3goz_A Leucine-rich repeat-con 99.5 5.2E-14 1.8E-18 113.0 10.4 183 6-200 20-241 (362)
115 2o6r_A Variable lymphocyte rec 99.5 2.2E-14 7.4E-19 103.9 7.4 126 9-166 8-135 (177)
116 3cvr_A Invasion plasmid antige 99.5 4.8E-14 1.6E-18 119.5 8.9 162 9-194 60-241 (571)
117 3cvr_A Invasion plasmid antige 99.5 3.4E-14 1.2E-18 120.4 6.9 136 32-201 60-197 (571)
118 4b8c_D Glucose-repressible alc 99.5 1.2E-14 4.2E-19 126.5 3.1 70 25-107 218-287 (727)
119 2o6r_A Variable lymphocyte rec 99.4 2E-13 6.9E-18 98.7 7.6 108 7-126 27-136 (177)
120 1w8a_A SLIT protein; signaling 99.4 1.7E-13 5.8E-18 100.6 6.8 107 9-127 30-139 (192)
121 3g39_A Variable lymphocyte rec 99.4 4.3E-13 1.5E-17 96.6 6.8 105 9-127 10-115 (170)
122 2ell_A Acidic leucine-rich nuc 99.4 3.8E-13 1.3E-17 96.4 6.4 104 4-120 45-152 (168)
123 1dce_A Protein (RAB geranylger 99.4 8.6E-13 2.9E-17 111.9 8.9 104 9-128 442-547 (567)
124 1z7x_W Ribonuclease inhibitor; 99.4 2.4E-13 8.1E-18 112.0 5.3 62 131-194 339-409 (461)
125 2je0_A Acidic leucine-rich nuc 99.4 5.2E-13 1.8E-17 93.8 6.1 93 3-107 37-130 (149)
126 4b8c_D Glucose-repressible alc 99.4 1.3E-13 4.5E-18 120.1 3.6 133 52-202 220-360 (727)
127 2r9u_A Variable lymphocyte rec 99.4 6.7E-13 2.3E-17 96.0 6.8 104 10-127 14-118 (174)
128 1z7x_W Ribonuclease inhibitor; 99.4 2.5E-13 8.7E-18 111.9 4.8 92 5-103 25-126 (461)
129 1ds9_A Outer arm dynein; leuci 99.3 9.1E-14 3.1E-18 102.4 0.5 140 10-189 25-180 (198)
130 1a9n_A U2A', U2A'; complex (nu 99.3 8.3E-13 2.8E-17 95.4 5.5 94 3-107 36-130 (176)
131 2r9u_A Variable lymphocyte rec 99.3 1.1E-12 3.7E-17 94.9 5.8 90 8-108 33-123 (174)
132 3g39_A Variable lymphocyte rec 99.3 1.4E-12 4.8E-17 93.9 5.8 90 7-107 29-119 (170)
133 3goz_A Leucine-rich repeat-con 99.3 2.8E-12 9.5E-17 102.9 7.3 170 12-198 2-210 (362)
134 3sb4_A Hypothetical leucine ri 99.3 6.7E-12 2.3E-16 99.4 7.1 65 7-73 48-141 (329)
135 2ifg_A High affinity nerve gro 99.2 1.9E-11 6.6E-16 97.3 8.3 86 12-108 12-98 (347)
136 3ogk_B Coronatine-insensitive 99.2 7.9E-11 2.7E-15 99.9 11.5 81 6-99 162-252 (592)
137 1ds9_A Outer arm dynein; leuci 99.2 1.6E-13 5.6E-18 101.0 -4.4 90 3-107 43-132 (198)
138 2ifg_A High affinity nerve gro 99.2 2.7E-11 9.1E-16 96.5 6.7 91 3-105 26-118 (347)
139 3ogk_B Coronatine-insensitive 99.1 5.3E-11 1.8E-15 100.9 7.1 57 6-64 190-251 (592)
140 3un9_A NLR family member X1; l 99.1 9.8E-11 3.3E-15 94.4 5.7 91 7-104 71-169 (372)
141 2p1m_B Transport inhibitor res 99.0 2.3E-10 7.9E-15 97.0 6.8 61 6-67 128-195 (594)
142 4fdw_A Leucine rich hypothetic 99.0 5E-09 1.7E-13 85.2 11.8 176 3-202 175-363 (401)
143 2p1m_B Transport inhibitor res 98.9 2.3E-09 7.9E-14 90.8 8.9 59 131-193 182-245 (594)
144 3sb4_A Hypothetical leucine ri 98.9 3.1E-09 1.1E-13 84.0 6.9 99 7-119 225-325 (329)
145 2ra8_A Uncharacterized protein 98.8 3.3E-08 1.1E-12 79.3 9.7 62 131-194 250-318 (362)
146 3e4g_A ATP synthase subunit S, 98.7 4E-08 1.4E-12 70.6 6.4 87 8-104 61-154 (176)
147 3un9_A NLR family member X1; l 98.6 3.1E-08 1.1E-12 79.8 5.7 138 7-166 100-250 (372)
148 4fdw_A Leucine rich hypothetic 98.6 1.8E-07 6.2E-12 76.0 9.1 151 27-201 176-339 (401)
149 3rw6_A Nuclear RNA export fact 98.3 6.2E-07 2.1E-11 68.8 5.4 87 7-104 140-234 (267)
150 3e4g_A ATP synthase subunit S, 98.2 2.2E-06 7.6E-11 61.5 5.9 34 57-100 62-95 (176)
151 3rw6_A Nuclear RNA export fact 98.1 1.1E-06 3.7E-11 67.4 2.4 45 53-105 167-211 (267)
152 1io0_A Tropomodulin; LRR prote 98.0 5.5E-06 1.9E-10 59.9 4.9 91 5-103 33-136 (185)
153 1io0_A Tropomodulin; LRR prote 98.0 4.5E-06 1.5E-10 60.4 3.9 93 4-104 61-165 (185)
154 2ra8_A Uncharacterized protein 97.9 3.3E-05 1.1E-09 61.8 7.5 172 4-194 135-341 (362)
155 3rfe_A Platelet glycoprotein I 97.5 0.00014 4.9E-09 49.4 5.0 56 11-69 11-68 (130)
156 4gt6_A Cell surface protein; l 97.4 0.00034 1.2E-08 56.3 7.5 133 20-193 253-388 (394)
157 4fs7_A Uncharacterized protein 97.3 0.0012 4E-08 53.1 9.0 61 3-66 157-218 (394)
158 4fs7_A Uncharacterized protein 97.3 0.003 1E-07 50.8 11.2 50 21-73 151-201 (394)
159 4h09_A Hypothetical leucine ri 97.0 0.0011 3.8E-08 52.9 6.2 102 4-120 213-315 (379)
160 4gt6_A Cell surface protein; l 97.0 0.0014 4.7E-08 52.7 6.6 122 3-140 260-385 (394)
161 4h09_A Hypothetical leucine ri 97.0 0.00073 2.5E-08 53.9 4.5 102 4-120 236-338 (379)
162 3rfe_A Platelet glycoprotein I 96.2 0.0034 1.2E-07 42.4 3.2 57 34-104 11-69 (130)
163 1pgv_A TMD-1, tropomodulin TMD 95.0 0.038 1.3E-06 40.1 5.1 12 155-166 157-168 (197)
164 1pgv_A TMD-1, tropomodulin TMD 90.8 0.22 7.5E-06 36.0 3.7 44 54-103 68-111 (197)
165 2lz0_A Uncharacterized protein 72.7 2.9 0.0001 26.4 2.9 35 27-63 16-50 (100)
166 2lz0_A Uncharacterized protein 64.3 3.2 0.00011 26.2 1.7 49 42-101 6-54 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.4e-22 Score=161.18 Aligned_cols=189 Identities=19% Similarity=0.240 Sum_probs=124.6
Q ss_pred ccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccch-hhhhhhcccccc
Q 048752 4 IGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQK-WEVEVEGAKNAS 82 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~-~~~~i~~~~~~~ 82 (205)
++++++|++|++++|.++.+|..++.+++|++|++++ +.+..+|.. +..+++|++|++++|.... +|..+.. ...
T Consensus 100 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~-n~l~~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~--~~~ 175 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLAR-NPLRALPAS-IASLNRLRELSIRACPELTELPEPLAS--TDA 175 (328)
T ss_dssp GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEES-CCCCCCCGG-GGGCTTCCEEEEEEETTCCCCCSCSEE--EC-
T ss_pred hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCC-CccccCcHH-HhcCcCCCEEECCCCCCccccChhHhh--ccc
Confidence 4456667777777776666666666677777777766 455566665 6666777777776654332 3321110 000
Q ss_pred HHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-CC---CCCCcceEEecCcc---cchhhHHHhc
Q 048752 83 LEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-TN---IWRSEFRLRLNNKI---CLKDWLIVQL 154 (205)
Q Consensus 83 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~~---~~~~L~~L~l~~~~---~~~~~~~~~~ 154 (205)
...++.+++|++|++++|.++.+|..+ .+++.|+.+ +.++.+.. |. .+++|++|+++.+. ..+.++. .+
T Consensus 176 ~~~~~~l~~L~~L~L~~n~l~~lp~~l--~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-~l 252 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTGIRSLPASI--ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GR 252 (328)
T ss_dssp CCCEEESTTCCEEEEEEECCCCCCGGG--GGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTT-CC
T ss_pred hhhhccCCCCCEEECcCCCcCcchHhh--cCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhc-CC
Confidence 112345888888888888888776543 566666665 55555544 32 56788888885532 2344455 57
Q ss_pred CCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCCCC
Q 048752 155 QGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPAES 203 (205)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~~ 203 (205)
++|+.|++++|. ..+.+|..+ ..+++|++|++++|+.++.+|..+
T Consensus 253 ~~L~~L~L~~n~--~~~~~p~~~--~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 253 APLKRLILKDCS--NLLTLPLDI--HRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CCCCEEECTTCT--TCCBCCTTG--GGCTTCCEEECTTCTTCCCCCGGG
T ss_pred CCCCEEECCCCC--chhhcchhh--hcCCCCCEEeCCCCCchhhccHHH
Confidence 889999999888 777888777 588999999999998888888754
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.4e-20 Score=149.61 Aligned_cols=179 Identities=21% Similarity=0.257 Sum_probs=144.5
Q ss_pred cccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh
Q 048752 7 LKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL 86 (205)
Q Consensus 7 l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l 86 (205)
..+++.|++++|+++.+|..+..+++|++|++++ +.+..+|.. +..+++|++|++++|.+..+|. .+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~-----------~l 146 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDA-AGLMELPDT-MQQFAGLETLTLARNPLRALPA-----------SI 146 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEES-SCCCCCCSC-GGGGTTCSEEEEESCCCCCCCG-----------GG
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCC-CCccchhHH-HhccCCCCEEECCCCccccCcH-----------HH
Confidence 4789999999999999999999999999999999 567799987 8999999999999999998876 78
Q ss_pred cCCCCccEEEEEeeCC-eeccCCcC-------cccccceEEe-eccccccC-CC---CCCCcceEEecCcc--cchhhHH
Q 048752 87 KHLPNLTSLELDIHDV-NTLPRGLF-------LEKLGKYRIR-IGDWYWES-TN---IWRSEFRLRLNNKI--CLKDWLI 151 (205)
Q Consensus 87 ~~l~~L~~L~l~~~~~-~~~~~~~~-------~~~L~~L~~~-~~~~~~~~-~~---~~~~L~~L~l~~~~--~~~~~~~ 151 (205)
+.+++|+.|++++|.. ..+|..+. +..++.|+.+ +.++.+.. |. .+++|++|+++.+. ..+..+.
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~ 226 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH 226 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGG
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhc
Confidence 9999999999999754 45555431 2335555555 55544444 33 67889999995543 2344555
Q ss_pred HhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCCCC
Q 048752 152 VQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPAES 203 (205)
Q Consensus 152 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~~ 203 (205)
.+++|+.|++++|. ..+.+|..+ .++++|++|++++|..+..+|..+
T Consensus 227 -~l~~L~~L~Ls~n~--~~~~~p~~~--~~l~~L~~L~L~~n~~~~~~p~~~ 273 (328)
T 4fcg_A 227 -HLPKLEELDLRGCT--ALRNYPPIF--GGRAPLKRLILKDCSNLLTLPLDI 273 (328)
T ss_dssp -GCTTCCEEECTTCT--TCCBCCCCT--TCCCCCCEEECTTCTTCCBCCTTG
T ss_pred -cCCCCCEEECcCCc--chhhhHHHh--cCCCCCCEEECCCCCchhhcchhh
Confidence 68999999999998 777788877 699999999999999888888654
No 3
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=6.2e-20 Score=142.84 Aligned_cols=176 Identities=20% Similarity=0.238 Sum_probs=119.4
Q ss_pred cccCcccceeEeecCCCcccc-chhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQL-PIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
.+.++++|++|++++|.++.+ |..+..+++|++|++++|..++.+++..+..+++|++|++++|.+..+++
T Consensus 51 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------- 122 (285)
T 1ozn_A 51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP-------- 122 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT--------
T ss_pred HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECH--------
Confidence 356677777777777777666 44577777777777777444666644446777777777777777776655
Q ss_pred cHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-C----CCCCCcceEEecCccc---chhhHHH
Q 048752 82 SLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-T----NIWRSEFRLRLNNKIC---LKDWLIV 152 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~----~~~~~L~~L~l~~~~~---~~~~~~~ 152 (205)
..+..+++|+.|++++|.++.++.. .+..++.|+.+ +.++.+.. + ..+++|++|+++.+.. .+.++.
T Consensus 123 --~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~- 198 (285)
T 1ozn_A 123 --GLFRGLAALQYLYLQDNALQALPDD-TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR- 198 (285)
T ss_dssp --TTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-
T ss_pred --hHhhCCcCCCEEECCCCcccccCHh-HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHcc-
Confidence 4677888888888888888877765 45666666665 55554444 2 2567788888855432 133454
Q ss_pred hcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCC
Q 048752 153 QLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 153 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 194 (205)
.+++|+.|++++|. ++.++.... ..+++|++|++++|+
T Consensus 199 ~l~~L~~L~l~~n~---l~~~~~~~~-~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 199 DLGRLMTLYLFANN---LSALPTEAL-APLRALQYLRLNDNP 236 (285)
T ss_dssp TCTTCCEEECCSSC---CSCCCHHHH-TTCTTCCEEECCSSC
T ss_pred CcccccEeeCCCCc---CCcCCHHHc-ccCcccCEEeccCCC
Confidence 57888888888886 555554422 578888888888887
No 4
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=4.8e-19 Score=141.83 Aligned_cols=187 Identities=19% Similarity=0.137 Sum_probs=112.8
Q ss_pred cccCcccceeEeecCCCccccch-hhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPI-EVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
.++++++|++|++++|+++.++. .++.+++|++|++++ +.++.+|.+.+..+++|++|++++|.+..++.
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-------- 141 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE-------- 141 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS--------
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCccCCEEECCCCCCcccCc--------
Confidence 35566666777776666665543 366667777777766 45666666556666677777776666665443
Q ss_pred cHHhhcCCCCccEEEEEee-CCeeccCCcCcccccceEEe-eccccccC--C---CCCCCcceEEecCccc--chhhHHH
Q 048752 82 SLEELKHLPNLTSLELDIH-DVNTLPRGLFLEKLGKYRIR-IGDWYWES--T---NIWRSEFRLRLNNKIC--LKDWLIV 152 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~~~-~~~~~~~~--~---~~~~~L~~L~l~~~~~--~~~~~~~ 152 (205)
...++.+++|++|++++| .+..+++. .+.+++.|+.. +.++.+.. + ..+++|++|+++.+.. .+..+..
T Consensus 142 -~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 219 (353)
T 2z80_A 142 -TSLFSHLTKLQILRVGNMDTFTKIQRK-DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219 (353)
T ss_dssp -SCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHH
T ss_pred -hhhhccCCCCcEEECCCCccccccCHH-HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhh
Confidence 024566777777777777 46666544 45556666555 44444333 2 2455667777744422 2222222
Q ss_pred hcCCccEEEeccCchhh-----------------------------HHhHHHHhhhcCCCCccEEeecCCCCCCCCCCCC
Q 048752 153 QLQGIEDLELRKLQEQD-----------------------------VIYFANELVKVGSSQLKFLRIHGCSDALNPPAES 203 (205)
Q Consensus 153 ~~~~L~~L~l~~~~~~~-----------------------------~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~~ 203 (205)
.+++|+.|++++|.... +..+|..+ ..+++|++|++++|. ++.+|.+.
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l--~~l~~L~~L~Ls~N~-l~~i~~~~ 296 (353)
T 2z80_A 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL--NQISGLLELEFSRNQ-LKSVPDGI 296 (353)
T ss_dssp HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH--HTCTTCCEEECCSSC-CCCCCTTT
T ss_pred hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH--hcccCCCEEECCCCC-CCccCHHH
Confidence 46777777777765111 11355555 478888888888887 77777653
No 5
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=1.4e-19 Score=149.62 Aligned_cols=180 Identities=21% Similarity=0.256 Sum_probs=100.9
Q ss_pred ccCcccceeEeecCCCccccc-hhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhcccccc
Q 048752 4 IGDLKKLEILCLRGSDIKQLP-IEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNAS 82 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~ 82 (205)
|+++++|++|++++|.++.++ ..+..+++|++|++++ +.++.+|.+.+..+++|++|++++|.+..+++
T Consensus 95 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------- 164 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-NWLTVIPSGAFEYLSKLRELWLRNNPIESIPS--------- 164 (452)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSBCCTTTSSSCTTCCEEECCSCCCCEECT---------
T ss_pred cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC-CcCCccChhhhcccCCCCEEECCCCCcceeCH---------
Confidence 445555555555555555444 2355555555555555 34555554445555555555555555555444
Q ss_pred HHhhcCCCCccEEEEEe-eCCeeccCCcCcccccceEEe-eccccccC-C--CCCCCcceEEecCccc---chhhHHHhc
Q 048752 83 LEELKHLPNLTSLELDI-HDVNTLPRGLFLEKLGKYRIR-IGDWYWES-T--NIWRSEFRLRLNNKIC---LKDWLIVQL 154 (205)
Q Consensus 83 ~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~--~~~~~L~~L~l~~~~~---~~~~~~~~~ 154 (205)
..+..+++|+.|++++ +.+..++.. .+..+..|+.+ +.++.+.. | ..+++|++|+++.+.. .+..+. .+
T Consensus 165 -~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l 241 (452)
T 3zyi_A 165 -YAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFH-GL 241 (452)
T ss_dssp -TTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGT-TC
T ss_pred -hHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCccccc-Cc
Confidence 3455555555555555 344444443 34555555555 44444443 2 2556677777754422 133344 56
Q ss_pred CCccEEEeccCchhhHHhH-HHHhhhcCCCCccEEeecCCCCCCCCCCC
Q 048752 155 QGIEDLELRKLQEQDVIYF-ANELVKVGSSQLKFLRIHGCSDALNPPAE 202 (205)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~-~~~l~~~~~~~L~~L~l~~~~~l~~lp~~ 202 (205)
++|+.|++++|. ++.+ +..+ .++++|+.|++++|. ++.+|.+
T Consensus 242 ~~L~~L~L~~n~---l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~~ 284 (452)
T 3zyi_A 242 SSLKKLWVMNSQ---VSLIERNAF--DGLASLVELNLAHNN-LSSLPHD 284 (452)
T ss_dssp TTCCEEECTTSC---CCEECTTTT--TTCTTCCEEECCSSC-CSCCCTT
T ss_pred cCCCEEEeCCCc---CceECHHHh--cCCCCCCEEECCCCc-CCccChH
Confidence 778888887775 4444 3334 577888888888886 7777654
No 6
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=149.12 Aligned_cols=182 Identities=19% Similarity=0.232 Sum_probs=99.1
Q ss_pred cccCcccceeEeecCCCccccch-hhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPI-EVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
.|.++++|++|++++|.++.++. .+..+++|++|++++ +.++.+|.+.+..+++|++|++++|.+..+++
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-------- 153 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD-NRLTTIPNGAFVYLSKLKELWLRNNPIESIPS-------- 153 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS-SCCSSCCTTTSCSCSSCCEEECCSCCCCEECT--------
T ss_pred HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC-CcCCeeCHhHhhccccCceeeCCCCcccccCH--------
Confidence 34556666666666666655543 356666666666666 45555655445666666666666666665554
Q ss_pred cHHhhcCCCCccEEEEEee-CCeeccCCcCcccccceEEe-eccccccC-C--CCCCCcceEEecCcccc---hhhHHHh
Q 048752 82 SLEELKHLPNLTSLELDIH-DVNTLPRGLFLEKLGKYRIR-IGDWYWES-T--NIWRSEFRLRLNNKICL---KDWLIVQ 153 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~--~~~~~L~~L~l~~~~~~---~~~~~~~ 153 (205)
..+..+++|+.|++++| .+..++.. .+.+++.|+.+ +.++.+.. | ..+++|++|+++.+... +..+. .
T Consensus 154 --~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~ 229 (440)
T 3zyj_A 154 --YAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQ-G 229 (440)
T ss_dssp --TTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTT-T
T ss_pred --HHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhc-c
Confidence 34555555555555552 44444443 34445555444 44443333 2 24556666666443211 22333 4
Q ss_pred cCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCCC
Q 048752 154 LQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPAE 202 (205)
Q Consensus 154 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~ 202 (205)
+++|+.|++++|. ++.++.... .++++|+.|++++|. ++.+|.+
T Consensus 230 l~~L~~L~L~~n~---l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~ 273 (440)
T 3zyj_A 230 LMHLQKLWMIQSQ---IQVIERNAF-DNLQSLVEINLAHNN-LTLLPHD 273 (440)
T ss_dssp CTTCCEEECTTCC---CCEECTTSS-TTCTTCCEEECTTSC-CCCCCTT
T ss_pred CccCCEEECCCCc---eeEEChhhh-cCCCCCCEEECCCCC-CCccChh
Confidence 5666777776664 444433221 466777777777775 6666654
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=2.9e-19 Score=138.17 Aligned_cols=170 Identities=25% Similarity=0.342 Sum_probs=134.5
Q ss_pred ccceeEeecCCCccccch-hhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh
Q 048752 8 KKLEILCLRGSDIKQLPI-EVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL 86 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l 86 (205)
.+++.|++++|+++.+|. .+..+++|++|++++ +.++.+|.+.+..+++|++|++++|.+..+++ ..+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~----------~~~ 105 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDNKLQALPI----------GVF 105 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT----------TTT
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCCEEECCCCcCCcCCH----------hHc
Confidence 468999999999988876 488999999999998 67888888767889999999999999988877 567
Q ss_pred cCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-C----CCCCCcceEEecCccc--ch-hhHHHhcCCc
Q 048752 87 KHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-T----NIWRSEFRLRLNNKIC--LK-DWLIVQLQGI 157 (205)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~----~~~~~L~~L~l~~~~~--~~-~~~~~~~~~L 157 (205)
..+++|+.|++++|.++.+++. .+..++.|+.+ +.++.+.. + ..+++|++|+++.+.. .+ ..+. .+++|
T Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L 183 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSLPPR-VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD-KLTEL 183 (270)
T ss_dssp TTCSSCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTC
T ss_pred ccccCCCEEECCCCccCeeCHH-HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhc-cCCCc
Confidence 8899999999999999888876 56777777777 66655544 2 2567889999955422 22 2244 57899
Q ss_pred cEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCC
Q 048752 158 EDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 158 ~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 194 (205)
+.|++++|. ++.+|.... ..+++|+.|++++|+
T Consensus 184 ~~L~L~~N~---l~~~~~~~~-~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 184 KTLKLDNNQ---LKRVPEGAF-DSLEKLKMLQLQENP 216 (270)
T ss_dssp CEEECCSSC---CSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred CEEECCCCc---CCcCCHHHh-ccccCCCEEEecCCC
Confidence 999999986 667766533 678999999999998
No 8
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=2.5e-19 Score=136.07 Aligned_cols=180 Identities=18% Similarity=0.202 Sum_probs=138.4
Q ss_pred ccceeEeecCCCccccch-hhccccccceEeccCCCCCcccChHHhhcccccceeecCC-CccchhhhhhhccccccHHh
Q 048752 8 KKLEILCLRGSDIKQLPI-EVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISR-RSFQKWEVEVEGAKNASLEE 85 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~-~~~~~~~~~i~~~~~~~~~~ 85 (205)
.++++|++++|+++.+|. .+..+++|++|++++|..++.++++.+..+++|++|++++ |.++.+++ ..
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~----------~~ 100 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP----------DA 100 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT----------TS
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH----------HH
Confidence 479999999999999987 5899999999999995458999986689999999999998 99998887 57
Q ss_pred hcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccc-cccC-CC----CCCCcc-eEEecCccc--chhhHHHhcC
Q 048752 86 LKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDW-YWES-TN----IWRSEF-RLRLNNKIC--LKDWLIVQLQ 155 (205)
Q Consensus 86 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~-~~~~-~~----~~~~L~-~L~l~~~~~--~~~~~~~~~~ 155 (205)
+..+++|+.|++++|.++.+|....+.+++.|+.. +.++ .+.. +. .+++|+ +|+++.+.. .+.... ..+
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~-~~~ 179 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-NGT 179 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT-TTC
T ss_pred hCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc-CCC
Confidence 88999999999999999998862233334422255 6555 5544 22 566788 999855432 232222 237
Q ss_pred CccEEEeccCchhhHHhHHHHhhhcCC-CCccEEeecCCCCCCCCCCC
Q 048752 156 GIEDLELRKLQEQDVIYFANELVKVGS-SQLKFLRIHGCSDALNPPAE 202 (205)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~l~~~~~-~~L~~L~l~~~~~l~~lp~~ 202 (205)
+|+.|++++|. .++.+|.... .++ ++|+.|++++|. ++.+|..
T Consensus 180 ~L~~L~L~~n~--~l~~i~~~~~-~~l~~~L~~L~l~~N~-l~~l~~~ 223 (239)
T 2xwt_C 180 KLDAVYLNKNK--YLTVIDKDAF-GGVYSGPSLLDVSQTS-VTALPSK 223 (239)
T ss_dssp EEEEEECTTCT--TCCEECTTTT-TTCSBCCSEEECTTCC-CCCCCCT
T ss_pred CCCEEEcCCCC--CcccCCHHHh-hccccCCcEEECCCCc-cccCChh
Confidence 89999999995 4777765543 678 999999999988 8888875
No 9
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=144.28 Aligned_cols=177 Identities=20% Similarity=0.208 Sum_probs=137.6
Q ss_pred cccCcccceeEeecCCCccccchh-hccccccceEeccCCCCCcccCh-HHhhcccccceeecCCC-ccchhhhhhhccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPP-NVLSNLSHLEELCISRR-SFQKWEVEVEGAK 79 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~-~~~~~l~~L~~L~l~~~-~~~~~~~~i~~~~ 79 (205)
.++++++|++|++++|+++.+|.. ++.+++|++|++++ +.++.+|. +.+..+++|++|++++| .+..+++
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~------ 167 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR------ 167 (353)
T ss_dssp TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT------
T ss_pred hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCccccccCH------
Confidence 477899999999999999999887 89999999999999 67888887 44889999999999998 4666665
Q ss_pred cccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-CC----CCCCcceEEecCccc--------
Q 048752 80 NASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-TN----IWRSEFRLRLNNKIC-------- 145 (205)
Q Consensus 80 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~~----~~~~L~~L~l~~~~~-------- 145 (205)
..++.+++|+.|++++|.++...+. .+.+++.|+.. +.++.+.. +. .+++|++|+++.+..
T Consensus 168 ----~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 168 ----KDFAGLTFLEELEIDASDLQSYEPK-SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp ----TTTTTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred ----HHccCCCCCCEEECCCCCcCccCHH-HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc
Confidence 5788899999999999988887555 55666666666 55544433 22 356777777743321
Q ss_pred --------------------------chhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCC
Q 048752 146 --------------------------LKDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDA 196 (205)
Q Consensus 146 --------------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l 196 (205)
.+.++. .+++|+.|++++|. ++.+|..+. ..+++|++|++++|+..
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~-~l~~L~~L~Ls~N~---l~~i~~~~~-~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLN-QISGLLELEFSRNQ---LKSVPDGIF-DRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHH-TCTTCCEEECCSSC---CCCCCTTTT-TTCTTCCEEECCSSCBC
T ss_pred ccccccchhhccccccccccCcchhhhHHHHh-cccCCCEEECCCCC---CCccCHHHH-hcCCCCCEEEeeCCCcc
Confidence 123344 58999999999996 678887753 68999999999999843
No 10
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=3.3e-19 Score=138.08 Aligned_cols=176 Identities=22% Similarity=0.281 Sum_probs=130.5
Q ss_pred cCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHH
Q 048752 5 GDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLE 84 (205)
Q Consensus 5 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~ 84 (205)
..+++|+.|+++++.++.++. ++.+++|++|++++ +.+..++ . +..+++|++|++++|.+..+++ .
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~-n~l~~~~-~-l~~l~~L~~L~L~~n~l~~~~~----------~ 103 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGG-NKLHDIS-A-LKELTNLTYLILTGNQLQSLPN----------G 103 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTT-SCCCCCG-G-GTTCTTCCEEECTTSCCCCCCT----------T
T ss_pred ccccceeeeeeCCCCcccccc-cccCCCCcEEECCC-CCCCCch-h-hcCCCCCCEEECCCCccCccCh----------h
Confidence 356788889999888887765 78889999999988 4566665 3 7888899999999888887776 5
Q ss_pred hhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-C----CCCCCcceEEecCccc--chh-hHHHhcC
Q 048752 85 ELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-T----NIWRSEFRLRLNNKIC--LKD-WLIVQLQ 155 (205)
Q Consensus 85 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~----~~~~~L~~L~l~~~~~--~~~-~~~~~~~ 155 (205)
.++.+++|++|++++|.++.++.. .+..+..|+.+ +.++.+.. + ..+++|++|+++.+.. .+. .+. .++
T Consensus 104 ~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~ 181 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQLQSLPDG-VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD-KLT 181 (272)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCT
T ss_pred HhcCCcCCCEEECCCCcCCccCHH-HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhc-CCc
Confidence 678888999999999888887766 55667777666 66555544 2 2567889999855432 122 234 578
Q ss_pred CccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCC
Q 048752 156 GIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPP 200 (205)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp 200 (205)
+|+.|++++|. ++.++.... ..+++|++|++++|+.....|
T Consensus 182 ~L~~L~L~~N~---l~~~~~~~~-~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 182 QLKDLRLYQNQ---LKSVPDGVF-DRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TCCEEECCSSC---CSCCCTTTT-TTCTTCCEEECCSSCBCCCTT
T ss_pred cCCEEECCCCc---CCccCHHHH-hCCcCCCEEEccCCCccccCc
Confidence 99999999986 566655432 688999999999998544433
No 11
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=1.4e-18 Score=137.85 Aligned_cols=108 Identities=11% Similarity=0.173 Sum_probs=59.3
Q ss_pred hhcCCCCccEEEEEeeCCeeccCCcCcccccceEEeeccccccC-----CCCCCCcceEEecCcccc---hhhHHHhcCC
Q 048752 85 ELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIRIGDWYWES-----TNIWRSEFRLRLNNKICL---KDWLIVQLQG 156 (205)
Q Consensus 85 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~---~~~~~~~~~~ 156 (205)
.+..+++|+.|++++|.++.++.. ...+|+.|. +.++.+.. -..+++|++|+++.+... +.++. .+++
T Consensus 166 ~~~~l~~L~~L~l~~n~l~~l~~~-~~~~L~~L~--l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~ 241 (330)
T 1xku_A 166 AFQGMKKLSYIRIADTNITTIPQG-LPPSLTELH--LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPH 241 (330)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCSS-CCTTCSEEE--CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTT
T ss_pred hccCCCCcCEEECCCCccccCCcc-ccccCCEEE--CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc-CCCC
Confidence 344445555555555555444443 222333322 22222222 125566777777444211 22344 5677
Q ss_pred ccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCCC
Q 048752 157 IEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPAE 202 (205)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~ 202 (205)
|+.|++++|. ++.+|..+ ..+++|++|++++|. ++.+|..
T Consensus 242 L~~L~L~~N~---l~~lp~~l--~~l~~L~~L~l~~N~-i~~~~~~ 281 (330)
T 1xku_A 242 LRELHLNNNK---LVKVPGGL--ADHKYIQVVYLHNNN-ISAIGSN 281 (330)
T ss_dssp CCEEECCSSC---CSSCCTTT--TTCSSCCEEECCSSC-CCCCCTT
T ss_pred CCEEECCCCc---CccCChhh--ccCCCcCEEECCCCc-CCccChh
Confidence 8888888775 56777666 477888888888877 7776654
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.78 E-value=6.9e-19 Score=142.65 Aligned_cols=67 Identities=18% Similarity=0.334 Sum_probs=33.5
Q ss_pred CcccceeEeecCCCccccch-hhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhh
Q 048752 6 DLKKLEILCLRGSDIKQLPI-EVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEV 73 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 73 (205)
++++|++|++++|.++.++. .+..+++|++|++++ +.+..++++.+..+++|++|++++|.+..+++
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 134 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCC-CCCCcCCHHHhcCCCCCCEEECCCCccCcCCH
Confidence 34555555555555554443 355555555555555 33444443334555555555555555554444
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=7.6e-19 Score=145.88 Aligned_cols=181 Identities=19% Similarity=0.159 Sum_probs=103.7
Q ss_pred cccCcccceeEeecCCCcccc-chhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQL-PIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
.|.++++|++|++++|.++.+ |..+.++++|++|++++ +.++.+|.+.+..+++|++|++++|++..+++
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-------- 121 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKLDISENKIVILLD-------- 121 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCTTSSTTCTTCCEEECTTSCCCEECT--------
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC-CcCCccCcccccCCCCCCEEECCCCccccCCh--------
Confidence 456677777777777777666 44577777777777777 56667776556677777777777777766544
Q ss_pred cHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-C----------------------------CC
Q 048752 82 SLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-T----------------------------NI 131 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~----------------------------~~ 131 (205)
..+..+++|+.|++++|.+..+++. .+..+++|+.+ +.++.+.. + ..
T Consensus 122 --~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~ 198 (477)
T 2id5_A 122 --YMFQDLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198 (477)
T ss_dssp --TTTTTCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCS
T ss_pred --hHccccccCCEEECCCCccceeChh-hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhccc
Confidence 3455555666666665555554433 33334433333 33322222 1 13
Q ss_pred CCCcceEEecCccc---chhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCC
Q 048752 132 WRSEFRLRLNNKIC---LKDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPA 201 (205)
Q Consensus 132 ~~~L~~L~l~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~ 201 (205)
+++|+.|+++.+.. .+.... ...+|+.|++++|. ++.+|.... ..+++|++|++++|. ++.++.
T Consensus 199 l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~---l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~ 265 (477)
T 2id5_A 199 LYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCN---LTAVPYLAV-RHLVYLRFLNLSYNP-ISTIEG 265 (477)
T ss_dssp CTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSC---CCSCCHHHH-TTCTTCCEEECCSSC-CCEECT
T ss_pred CcccceeeCCCCccccccCcccc-cCccccEEECcCCc---ccccCHHHh-cCccccCeeECCCCc-CCccCh
Confidence 33444444422111 111111 12367777777665 556654332 578888888888887 666554
No 14
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=9e-19 Score=138.02 Aligned_cols=172 Identities=20% Similarity=0.248 Sum_probs=118.4
Q ss_pred cccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhcccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNAS 82 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~ 82 (205)
.+..+++|++|++++|.++.++. +..+++|++|++++ +.++.++. +..+++|++|++++|.+..++
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~-n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---------- 123 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG-NPLKNVSA--IAGLQSIKTLDLTSTQITDVT---------- 123 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCS-CCCSCCGG--GTTCTTCCEEECTTSCCCCCG----------
T ss_pred hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccC-CcCCCchh--hcCCCCCCEEECCCCCCCCch----------
Confidence 45566777777777777776666 67777777777777 45666552 667777777777777766543
Q ss_pred HHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC---CCCCCCcceEEecCccc-chhhHHHhcCCc
Q 048752 83 LEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES---TNIWRSEFRLRLNNKIC-LKDWLIVQLQGI 157 (205)
Q Consensus 83 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~---~~~~~~L~~L~l~~~~~-~~~~~~~~~~~L 157 (205)
.+..+++|+.|++++|.++.++. +..++.|+.+ +.++.+.. ...+++|+.|+++.+.. ....+. .+++|
T Consensus 124 --~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~-~l~~L 197 (308)
T 1h6u_A 124 --PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA-SLPNL 197 (308)
T ss_dssp --GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGG-GCTTC
T ss_pred --hhcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChhhc-CCCCC
Confidence 37788888888888888887764 3556666655 55555444 23677888888855432 222244 68899
Q ss_pred cEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCC
Q 048752 158 EDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPA 201 (205)
Q Consensus 158 ~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~ 201 (205)
+.|++++|. +..++. + ..+++|+.|++++|+ ++..|.
T Consensus 198 ~~L~L~~N~---l~~~~~-l--~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 198 IEVHLKNNQ---ISDVSP-L--ANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp CEEECTTSC---CCBCGG-G--TTCTTCCEEEEEEEE-EECCCE
T ss_pred CEEEccCCc---cCcccc-c--cCCCCCCEEEccCCe-eecCCe
Confidence 999999886 566653 4 588999999999987 666554
No 15
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=1.1e-18 Score=136.49 Aligned_cols=177 Identities=20% Similarity=0.195 Sum_probs=113.3
Q ss_pred ccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccH
Q 048752 4 IGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASL 83 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~ 83 (205)
++++++++.+++++++++.+|..+. +++++|++++ +.++.+++..+..+++|++|++++|.++.++.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------- 72 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---------- 72 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC----------
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCC-CcCCccCHHHhhcCCCCCEEECCCCccCcccC----------
Confidence 5567778888888888888877654 6778888887 56666655557778888888888887776655
Q ss_pred HhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-C----CCCCCcceEEecCccc--chhh-HHHhc
Q 048752 84 EELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-T----NIWRSEFRLRLNNKIC--LKDW-LIVQL 154 (205)
Q Consensus 84 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~----~~~~~L~~L~l~~~~~--~~~~-~~~~~ 154 (205)
. +.+++|++|++++|.++.+|..+ ..+..|+.+ +.++.+.. + ..+++|++|+++.+.. .+.. +. .+
T Consensus 73 -~-~~l~~L~~L~Ls~N~l~~l~~~~--~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l 147 (290)
T 1p9a_G 73 -D-GTLPVLGTLDLSHNQLQSLPLLG--QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT-PT 147 (290)
T ss_dssp -C-SCCTTCCEEECCSSCCSSCCCCT--TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT-TC
T ss_pred -C-CCCCcCCEEECCCCcCCcCchhh--ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcc-cc
Confidence 1 56677777777777777666532 445555554 44444443 2 2455667777744321 1222 22 46
Q ss_pred CCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCCCC
Q 048752 155 QGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPAES 203 (205)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~~ 203 (205)
++|+.|++++|. ++.+|.... ..+++|+.|++++|. ++++|.+.
T Consensus 148 ~~L~~L~L~~N~---l~~l~~~~~-~~l~~L~~L~L~~N~-l~~ip~~~ 191 (290)
T 1p9a_G 148 PKLEKLSLANNN---LTELPAGLL-NGLENLDTLLLQENS-LYTIPKGF 191 (290)
T ss_dssp TTCCEEECTTSC---CSCCCTTTT-TTCTTCCEEECCSSC-CCCCCTTT
T ss_pred cCCCEEECCCCc---CCccCHHHh-cCcCCCCEEECCCCc-CCccChhh
Confidence 677777777765 556655443 456777777777776 66666654
No 16
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=2.4e-18 Score=136.55 Aligned_cols=179 Identities=20% Similarity=0.261 Sum_probs=141.8
Q ss_pred cccCcccceeEeecCCCcccc-chhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQL-PIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
.|+++++|++|++++|.++.+ |..++.+++|++|++++ +.++.+|.. +. ++|++|++++|.+..+++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~-~~--~~L~~L~l~~n~l~~~~~-------- 138 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK-NQLKELPEK-MP--KTLQELRVHENEITKVRK-------- 138 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-SCCSBCCSS-CC--TTCCEEECCSSCCCBBCH--------
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC-CcCCccChh-hc--ccccEEECCCCcccccCH--------
Confidence 578899999999999999887 67799999999999999 678889876 32 789999999999998877
Q ss_pred cHHhhcCCCCccEEEEEeeCCee--ccCCcCcccccceEEe-eccccccC-CC-CCCCcceEEecCcccc---hhhHHHh
Q 048752 82 SLEELKHLPNLTSLELDIHDVNT--LPRGLFLEKLGKYRIR-IGDWYWES-TN-IWRSEFRLRLNNKICL---KDWLIVQ 153 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~~~-~~~~~~~~-~~-~~~~L~~L~l~~~~~~---~~~~~~~ 153 (205)
..+..+++|+.|++++|.+.. .... .+.+++.|+.. +.++.+.. |. ..++|++|+++.+... +..+. .
T Consensus 139 --~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~-~ 214 (330)
T 1xku_A 139 --SVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLK-G 214 (330)
T ss_dssp --HHHTTCTTCCEEECCSSCCCGGGBCTT-GGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGT-T
T ss_pred --hHhcCCccccEEECCCCcCCccCcChh-hccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhc-C
Confidence 678999999999999998864 3333 55777777777 66665555 33 4478999999655322 34455 6
Q ss_pred cCCccEEEeccCchhhHHhHHH-HhhhcCCCCccEEeecCCCCCCCCCCCC
Q 048752 154 LQGIEDLELRKLQEQDVIYFAN-ELVKVGSSQLKFLRIHGCSDALNPPAES 203 (205)
Q Consensus 154 ~~~L~~L~l~~~~~~~~~~~~~-~l~~~~~~~L~~L~l~~~~~l~~lp~~~ 203 (205)
+++|+.|++++|. ++.++. .+ ..+++|++|++++|. ++.+|..+
T Consensus 215 l~~L~~L~Ls~n~---l~~~~~~~~--~~l~~L~~L~L~~N~-l~~lp~~l 259 (330)
T 1xku_A 215 LNNLAKLGLSFNS---ISAVDNGSL--ANTPHLRELHLNNNK-LVKVPGGL 259 (330)
T ss_dssp CTTCCEEECCSSC---CCEECTTTG--GGSTTCCEEECCSSC-CSSCCTTT
T ss_pred CCCCCEEECCCCc---CceeChhhc--cCCCCCCEEECCCCc-CccCChhh
Confidence 8999999999996 555544 45 588999999999997 88888764
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=5.4e-19 Score=150.84 Aligned_cols=91 Identities=18% Similarity=0.349 Sum_probs=48.7
Q ss_pred CcccceeEeecCCCccccch-hhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHH
Q 048752 6 DLKKLEILCLRGSDIKQLPI-EVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLE 84 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~ 84 (205)
++++|++|++++|.++.+|. .++.+++|++|++++ +.+..+|+..+..+++|++|++++|.+..+|+ .
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~----------~ 141 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR----------G 141 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------T
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCC-CcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH----------H
Confidence 44556666666666655543 355666666666665 34555554445556666666666665555554 2
Q ss_pred hhcCCCCccEEEEEeeCCeeccC
Q 048752 85 ELKHLPNLTSLELDIHDVNTLPR 107 (205)
Q Consensus 85 ~l~~l~~L~~L~l~~~~~~~~~~ 107 (205)
.++.+++|++|++++|.+..+++
T Consensus 142 ~~~~l~~L~~L~Ls~N~l~~~~~ 164 (597)
T 3oja_B 142 IFHNTPKLTTLSMSNNNLERIED 164 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCT
T ss_pred HhccCCCCCEEEeeCCcCCCCCh
Confidence 23444455555555544444433
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=5.9e-19 Score=150.58 Aligned_cols=93 Identities=19% Similarity=0.342 Sum_probs=76.6
Q ss_pred cccCcccceeEeecCCCccccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
.|+.+++|++|++++|.++.+|+. ++.+++|++|++++ +.+..+|++++..+++|++|++++|.+..+++
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-------- 164 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-------- 164 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT--------
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC-CCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh--------
Confidence 577889999999999999888765 78999999999999 57888888767889999999999999888776
Q ss_pred cHHhhcCCCCccEEEEEeeCCeecc
Q 048752 82 SLEELKHLPNLTSLELDIHDVNTLP 106 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~~~ 106 (205)
..++.+++|+.|++++|.++.++
T Consensus 165 --~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 165 --DTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp --TTTTTCTTCCEEECTTSCCSBCC
T ss_pred --hhhhcCCcCcEEECcCCCCCCcC
Confidence 46777777777777777766554
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=2.6e-19 Score=141.39 Aligned_cols=180 Identities=18% Similarity=0.236 Sum_probs=96.7
Q ss_pred cccCcccceeEeecC-CCcc-ccchhhccccccceEeccCCCCCc-ccChHHhhcccccceeecCCCccch-hhhhhhcc
Q 048752 3 VIGDLKKLEILCLRG-SDIK-QLPIEVGQLTWLTLLDLRECRKLE-VIPPNVLSNLSHLEELCISRRSFQK-WEVEVEGA 78 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~-~~i~-~lp~~i~~l~~L~~L~l~~c~~l~-~lp~~~~~~l~~L~~L~l~~~~~~~-~~~~i~~~ 78 (205)
.++++++|++|++++ |.+. .+|..++.+++|++|++++ +.+. .+|.. +..+++|++|++++|.+.. .|.
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~----- 143 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH-TNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPP----- 143 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEE-ECCEEECCGG-GGGCTTCCEEECCSSEEESCCCG-----
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcC-CeeCCcCCHH-HhCCCCCCEEeCCCCccCCcCCh-----
Confidence 355666777777764 5554 5566666777777777766 3444 55554 6667777777776666663 333
Q ss_pred ccccHHhhcCCCCccEEEEEeeCCe-eccCCc-----------------------CcccccceEEe-eccccccC--C--
Q 048752 79 KNASLEELKHLPNLTSLELDIHDVN-TLPRGL-----------------------FLEKLGKYRIR-IGDWYWES--T-- 129 (205)
Q Consensus 79 ~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-----------------------~~~~L~~L~~~-~~~~~~~~--~-- 129 (205)
.++.+++|++|++++|.++ .+|..+ .+..+. |+.. +.++.+.. +
T Consensus 144 ------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~ 216 (313)
T 1ogq_A 144 ------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL 216 (313)
T ss_dssp ------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGG
T ss_pred ------HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHH
Confidence 4444444444444444444 222211 112222 2222 22222221 1
Q ss_pred -CCCCCcceEEecCcccc--hhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCC
Q 048752 130 -NIWRSEFRLRLNNKICL--KDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPA 201 (205)
Q Consensus 130 -~~~~~L~~L~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~ 201 (205)
..+++|+.|+++.+... ...+. .+++|++|++++|. ....+|..+ ..+++|++|++++|.....+|.
T Consensus 217 ~~~l~~L~~L~L~~N~l~~~~~~~~-~l~~L~~L~Ls~N~--l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 217 FGSDKNTQKIHLAKNSLAFDLGKVG-LSKNLNGLDLRNNR--IYGTLPQGL--TQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CCTTSCCSEEECCSSEECCBGGGCC-CCTTCCEEECCSSC--CEECCCGGG--GGCTTCCEEECCSSEEEEECCC
T ss_pred HhcCCCCCEEECCCCceeeecCccc-ccCCCCEEECcCCc--ccCcCChHH--hcCcCCCEEECcCCcccccCCC
Confidence 24556666666443221 22222 45777777777776 333566666 4777788888877763235554
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=1.7e-18 Score=134.63 Aligned_cols=176 Identities=19% Similarity=0.214 Sum_probs=140.8
Q ss_pred cccceeEeecCCCccccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCCCc-cchhhhhhhccccccHH
Q 048752 7 LKKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRS-FQKWEVEVEGAKNASLE 84 (205)
Q Consensus 7 l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~-~~~~~~~i~~~~~~~~~ 84 (205)
.++|++|++++|+++.+|.. +..+++|++|++++ +.++.+++..+..+++|++|++++|. +..+++ .
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~----------~ 99 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP----------A 99 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT----------T
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCC-CccceeCHhhcCCccCCCEEeCCCCCCccccCH----------H
Confidence 46899999999999988854 89999999999999 57787755458999999999999997 877765 5
Q ss_pred hhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-C----CCCCCcceEEecCccc--ch-hhHHHhcC
Q 048752 85 ELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-T----NIWRSEFRLRLNNKIC--LK-DWLIVQLQ 155 (205)
Q Consensus 85 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~----~~~~~L~~L~l~~~~~--~~-~~~~~~~~ 155 (205)
.+..+++|++|++++|.++.+++. .+.+++.|+.. +.++.+.. + ..+++|++|+++.+.. .+ ..+. .++
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~ 177 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR-GLH 177 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCT
T ss_pred HhcCCcCCCEEECCCCcCCEECHh-HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhc-Ccc
Confidence 788999999999999999988765 56777777777 66655554 2 2578899999965532 22 2344 589
Q ss_pred CccEEEeccCchhhHHhH-HHHhhhcCCCCccEEeecCCCCCCCCCC
Q 048752 156 GIEDLELRKLQEQDVIYF-ANELVKVGSSQLKFLRIHGCSDALNPPA 201 (205)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~-~~~l~~~~~~~L~~L~l~~~~~l~~lp~ 201 (205)
+|+.|++++|. +..+ |..+ ..+++|+.|++++|. ++.+|.
T Consensus 178 ~L~~L~l~~n~---l~~~~~~~~--~~l~~L~~L~l~~n~-l~~~~~ 218 (285)
T 1ozn_A 178 SLDRLLLHQNR---VAHVHPHAF--RDLGRLMTLYLFANN-LSALPT 218 (285)
T ss_dssp TCCEEECCSSC---CCEECTTTT--TTCTTCCEEECCSSC-CSCCCH
T ss_pred ccCEEECCCCc---ccccCHhHc--cCcccccEeeCCCCc-CCcCCH
Confidence 99999999997 4554 6666 689999999999997 777664
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=143.70 Aligned_cols=190 Identities=19% Similarity=0.236 Sum_probs=124.3
Q ss_pred cccCcccceeEeecCCCccccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhh-hhc---
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVE-VEG--- 77 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~-i~~--- 77 (205)
.|+++++|++|++++|+++.+|.. +.++++|++|++++ +.+..+++..+..+++|++|++++|.+..+++. +.+
T Consensus 75 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 153 (477)
T 2id5_A 75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE-NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153 (477)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT
T ss_pred hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC-CccccCChhHccccccCCEEECCCCccceeChhhccCCCC
Confidence 467788888888888888888765 67888888888888 456655544477777777777777776655440 000
Q ss_pred --------cc-c-ccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC--CC---CCCCcceEEec
Q 048752 78 --------AK-N-ASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES--TN---IWRSEFRLRLN 141 (205)
Q Consensus 78 --------~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~--~~---~~~~L~~L~l~ 141 (205)
.. . -....+..+++|+.|++++|.+..++.. .+..+..|+.+ +.++.... +. ...+|++|+++
T Consensus 154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY-SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp CCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT-CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred CCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh-hcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence 00 0 0113466667777777777776666554 45555555555 44432222 21 33489999995
Q ss_pred Cccc--ch-hhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCC
Q 048752 142 NKIC--LK-DWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPP 200 (205)
Q Consensus 142 ~~~~--~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp 200 (205)
.+.. .+ ..+. .+++|+.|++++|. ++.++.... .++++|++|++++|. ++.++
T Consensus 233 ~n~l~~~~~~~~~-~l~~L~~L~Ls~n~---l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~ 288 (477)
T 2id5_A 233 HCNLTAVPYLAVR-HLVYLRFLNLSYNP---ISTIEGSML-HELLRLQEIQLVGGQ-LAVVE 288 (477)
T ss_dssp SSCCCSCCHHHHT-TCTTCCEEECCSSC---CCEECTTSC-TTCTTCCEEECCSSC-CSEEC
T ss_pred CCcccccCHHHhc-CccccCeeECCCCc---CCccChhhc-cccccCCEEECCCCc-cceEC
Confidence 5432 23 2344 68999999999996 566655432 689999999999997 65553
No 22
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=1.1e-18 Score=132.43 Aligned_cols=172 Identities=18% Similarity=0.190 Sum_probs=136.2
Q ss_pred cccCcccceeEeecCCC-ccccch-hhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhcccc
Q 048752 3 VIGDLKKLEILCLRGSD-IKQLPI-EVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKN 80 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~-i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~ 80 (205)
.++++++|++|++++|+ ++.++. .+..+++|++|++++|+.++.+|++.+..+++|++|++++|.++.+|.
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~------- 122 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD------- 122 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-------
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-------
Confidence 47789999999999997 999987 489999999999998778999997768999999999999999987653
Q ss_pred ccHHhhcCCCCcc---EEEEEee-CCeeccCCcCcccccceE-Ee-eccccccC-CC---CCCCcceEEecCcc---cch
Q 048752 81 ASLEELKHLPNLT---SLELDIH-DVNTLPRGLFLEKLGKYR-IR-IGDWYWES-TN---IWRSEFRLRLNNKI---CLK 147 (205)
Q Consensus 81 ~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~L~~L~-~~-~~~~~~~~-~~---~~~~L~~L~l~~~~---~~~ 147 (205)
++.+++|+ .|++++| .++.++.. .+..+..|+ .. +.++.+.. +. ..++|+.|++..+. ..+
T Consensus 123 -----~~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~ 196 (239)
T 2xwt_C 123 -----LTKVYSTDIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196 (239)
T ss_dssp -----CTTCCBCCSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEEC
T ss_pred -----cccccccccccEEECCCCcchhhcCcc-cccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCC
Confidence 55666666 9999999 99999887 678888887 55 66655544 32 23678999996652 222
Q ss_pred -hhHHHhc-CCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCC
Q 048752 148 -DWLIVQL-QGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSD 195 (205)
Q Consensus 148 -~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~ 195 (205)
..+. .+ ++|+.|++++|. ++.+|.. .+++|+.|+++++..
T Consensus 197 ~~~~~-~l~~~L~~L~l~~N~---l~~l~~~----~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 197 KDAFG-GVYSGPSLLDVSQTS---VTALPSK----GLEHLKELIARNTWT 238 (239)
T ss_dssp TTTTT-TCSBCCSEEECTTCC---CCCCCCT----TCTTCSEEECTTC--
T ss_pred HHHhh-ccccCCcEEECCCCc---cccCChh----HhccCceeeccCccC
Confidence 3344 56 899999999986 6777654 489999999999864
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=2.4e-18 Score=142.17 Aligned_cols=175 Identities=18% Similarity=0.138 Sum_probs=139.8
Q ss_pred ccceeEeecCCCccccc-hhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh
Q 048752 8 KKLEILCLRGSDIKQLP-IEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL 86 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l 86 (205)
+++++|++++|+++.++ ..+.++++|++|++++ +.+..++++.+..+++|++|++++|.++.+++ ..+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------~~~ 143 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-NSIRQIEVGAFNGLASLNTLELFDNWLTVIPS----------GAF 143 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCSBCCT----------TTS
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCC-CccCCcChhhccCcccCCEEECCCCcCCccCh----------hhh
Confidence 57999999999998875 5599999999999999 67888886669999999999999999998887 578
Q ss_pred cCCCCccEEEEEeeCCeeccCCcCcccccceEEe-ecc-ccccC-----CCCCCCcceEEecCccc-chhhHHHhcCCcc
Q 048752 87 KHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGD-WYWES-----TNIWRSEFRLRLNNKIC-LKDWLIVQLQGIE 158 (205)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~-~~~~~-----~~~~~~L~~L~l~~~~~-~~~~~~~~~~~L~ 158 (205)
+.+++|+.|++++|.++.++.. .+.++..|+.+ +.+ +.+.. -..+++|++|+++.+.. ....+. .+++|+
T Consensus 144 ~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~l~~L~ 221 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESIPSY-AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLT-PLVGLE 221 (452)
T ss_dssp SSCTTCCEEECCSCCCCEECTT-TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCT-TCTTCC
T ss_pred cccCCCCEEECCCCCcceeCHh-HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccccc-cccccc
Confidence 8999999999999999998876 66777777766 554 22222 22678899999955432 222344 578999
Q ss_pred EEEeccCchhhHHhH-HHHhhhcCCCCccEEeecCCCCCCCCCC
Q 048752 159 DLELRKLQEQDVIYF-ANELVKVGSSQLKFLRIHGCSDALNPPA 201 (205)
Q Consensus 159 ~L~l~~~~~~~~~~~-~~~l~~~~~~~L~~L~l~~~~~l~~lp~ 201 (205)
.|++++|. ++.+ |..+ .++++|+.|++++|. ++.++.
T Consensus 222 ~L~Ls~N~---l~~~~~~~~--~~l~~L~~L~L~~n~-l~~~~~ 259 (452)
T 3zyi_A 222 ELEMSGNH---FPEIRPGSF--HGLSSLKKLWVMNSQ-VSLIER 259 (452)
T ss_dssp EEECTTSC---CSEECGGGG--TTCTTCCEEECTTSC-CCEECT
T ss_pred EEECcCCc---CcccCcccc--cCccCCCEEEeCCCc-CceECH
Confidence 99999997 5555 5556 699999999999998 665543
No 24
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=2.9e-18 Score=131.18 Aligned_cols=167 Identities=18% Similarity=0.236 Sum_probs=110.8
Q ss_pred cceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcC
Q 048752 9 KLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKH 88 (205)
Q Consensus 9 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~ 88 (205)
..+.+++++++++.+|..+. +++++|++++ +.+..+++..+..+++|++|++++|.+..+++ ..+..
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------~~~~~ 81 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQS-TGLATLSDATFRGLTKLTWLNLDYNQLQTLSA----------GVFDD 81 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT----------TTTTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccC-CCcCccCHhHhcCcccCCEEECCCCcCCccCH----------hHhcc
Confidence 45667777777777776654 5777777777 55666665446777777777777777776665 45677
Q ss_pred CCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-C----CCCCCcceEEecCccc--chh-hHHHhcCCccE
Q 048752 89 LPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-T----NIWRSEFRLRLNNKIC--LKD-WLIVQLQGIED 159 (205)
Q Consensus 89 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~----~~~~~L~~L~l~~~~~--~~~-~~~~~~~~L~~ 159 (205)
+++|++|++++|.++.++.. .+..+..|+.+ +.++.+.. + ..+++|++|+++.+.. .+. .+. .+++|+.
T Consensus 82 l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~ 159 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLG-VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD-KLTNLQT 159 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCE
T ss_pred CCcCCEEECCCCcccccChh-HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcC-cCcCCCE
Confidence 77777777777777776655 45556666555 55554444 2 1456777777754421 222 344 5788888
Q ss_pred EEeccCchhhHHhHHHHhhhcCCCCccEEeecCCC
Q 048752 160 LELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 160 L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 194 (205)
|++++|. ++.++.... ..+++|+.|++++|+
T Consensus 160 L~L~~N~---l~~~~~~~~-~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 160 LSLSTNQ---LQSVPHGAF-DRLGKLQTITLFGNQ 190 (251)
T ss_dssp EECCSSC---CSCCCTTTT-TTCTTCCEEECCSCC
T ss_pred EECCCCc---CCccCHHHH-hCCCCCCEEEeeCCc
Confidence 8888886 556654332 578888888888887
No 25
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=3.1e-18 Score=134.49 Aligned_cols=178 Identities=16% Similarity=0.130 Sum_probs=97.6
Q ss_pred ccceeEeecCCCccccchh-hccccccceEeccCCCCCccc---ChHHhhcccccceeecCCCccchhhhhhhc------
Q 048752 8 KKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVI---PPNVLSNLSHLEELCISRRSFQKWEVEVEG------ 77 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l---p~~~~~~l~~L~~L~l~~~~~~~~~~~i~~------ 77 (205)
++|++|++++|+++.+|.. +..+++|++|++++ +.+..+ +.. +..+++|++|++++|.+..++..+.+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSS-NGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCC-CccCcccCcccc-cccccccCEEECCCCccccChhhcCCCCCCCE
Confidence 3556666666666555554 45566666666655 334333 333 44555555555555555544431110
Q ss_pred -----ccccc---HHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC---C---CCCCCcceEEecC
Q 048752 78 -----AKNAS---LEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES---T---NIWRSEFRLRLNN 142 (205)
Q Consensus 78 -----~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~---~---~~~~~L~~L~l~~ 142 (205)
..... ...+..+++|+.|++++|.+....+. .+..++.|+.+ +.++.+.. | ..+++|++|+++.
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 00000 13456677777777777777665544 44555555555 44433321 2 2566777777754
Q ss_pred ccc---chhhHHHhcCCccEEEeccCchhhHHhHHH-HhhhcCCCCccEEeecCCC
Q 048752 143 KIC---LKDWLIVQLQGIEDLELRKLQEQDVIYFAN-ELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 143 ~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~~~~~L~~L~l~~~~ 194 (205)
+.. .+.++. .+++|+.|++++|. ++.++. .+ ..+++|++|++++|.
T Consensus 185 n~l~~~~~~~~~-~l~~L~~L~L~~N~---l~~~~~~~~--~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 185 CQLEQLSPTAFN-SLSSLQVLNMSHNN---FFSLDTFPY--KCLNSLQVLDYSLNH 234 (306)
T ss_dssp SCCCEECTTTTT-TCTTCCEEECTTSC---CSBCCSGGG--TTCTTCCEEECTTSC
T ss_pred CCcCCcCHHHhc-CCCCCCEEECCCCc---cCccChhhc--cCcccCCEeECCCCC
Confidence 421 123344 56778888887775 455443 33 567888888888876
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=140.58 Aligned_cols=176 Identities=15% Similarity=0.147 Sum_probs=140.6
Q ss_pred ccceeEeecCCCccccc-hhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh
Q 048752 8 KKLEILCLRGSDIKQLP-IEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL 86 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l 86 (205)
.++++|++++|+++.++ ..+.++++|++|++++ +.+..++++.+..+++|++|++++|+++.+++ ..+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~----------~~~ 132 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR-NHIRTIEIGAFNGLANLNTLELFDNRLTTIPN----------GAF 132 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCS-SCCCEECGGGGTTCSSCCEEECCSSCCSSCCT----------TTS
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCC-CcCCccChhhccCCccCCEEECCCCcCCeeCH----------hHh
Confidence 56899999999999887 4599999999999999 67888887779999999999999999998887 678
Q ss_pred cCCCCccEEEEEeeCCeeccCCcCcccccceEEe-ecc-ccccC-----CCCCCCcceEEecCcc-cchhhHHHhcCCcc
Q 048752 87 KHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGD-WYWES-----TNIWRSEFRLRLNNKI-CLKDWLIVQLQGIE 158 (205)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~-~~~~~-----~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~ 158 (205)
..+++|+.|++++|.++.++.. .+.++.+|+.+ +.+ +.+.. -..+++|++|+++.+. .....+. .+++|+
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~l~~L~ 210 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSY-AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLT-PLIKLD 210 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTT-TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCT-TCSSCC
T ss_pred hccccCceeeCCCCcccccCHH-HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccC-CCcccC
Confidence 9999999999999999998876 66777777766 554 22222 2267899999995543 2222344 588999
Q ss_pred EEEeccCchhhHHhH-HHHhhhcCCCCccEEeecCCCCCCCCCCC
Q 048752 159 DLELRKLQEQDVIYF-ANELVKVGSSQLKFLRIHGCSDALNPPAE 202 (205)
Q Consensus 159 ~L~l~~~~~~~~~~~-~~~l~~~~~~~L~~L~l~~~~~l~~lp~~ 202 (205)
.|++++|. ++.+ |..+ .++++|+.|++++|. ++.++.+
T Consensus 211 ~L~Ls~N~---l~~~~~~~~--~~l~~L~~L~L~~n~-l~~~~~~ 249 (440)
T 3zyj_A 211 ELDLSGNH---LSAIRPGSF--QGLMHLQKLWMIQSQ-IQVIERN 249 (440)
T ss_dssp EEECTTSC---CCEECTTTT--TTCTTCCEEECTTCC-CCEECTT
T ss_pred EEECCCCc---cCccChhhh--ccCccCCEEECCCCc-eeEEChh
Confidence 99999997 5665 5555 689999999999997 6666543
No 27
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=6.3e-18 Score=130.65 Aligned_cols=174 Identities=18% Similarity=0.224 Sum_probs=140.3
Q ss_pred cceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcC
Q 048752 9 KLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKH 88 (205)
Q Consensus 9 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~ 88 (205)
..+.+++++++++.+|..+. +++++|++++ +.+..++...+..+++|++|++++|.+..+++ ..+..
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~----------~~~~~ 83 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA----------GIFKE 83 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCS-SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT----------TTTSS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcC-CCCCeeCHHHhcCCCCCCEEECCCCccCeeCh----------hhhcC
Confidence 47889999999999998765 7899999999 67888887668999999999999999998887 56789
Q ss_pred CCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-C----CCCCCcceEEecCccc--chh-hHHHhcCCccE
Q 048752 89 LPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-T----NIWRSEFRLRLNNKIC--LKD-WLIVQLQGIED 159 (205)
Q Consensus 89 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~----~~~~~L~~L~l~~~~~--~~~-~~~~~~~~L~~ 159 (205)
+++|++|++++|.++.++.. .+..+..|+.+ +.++.+.. + ..+++|++|+++.+.. .+. .+. .+++|+.
T Consensus 84 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~ 161 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIG-VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD-KLTSLKE 161 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTT-TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCE
T ss_pred CCCCCEEECCCCcCCcCCHh-HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc-CCcccce
Confidence 99999999999999998876 56777777777 66655544 2 2678999999965532 222 244 6899999
Q ss_pred EEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCCC
Q 048752 160 LELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPAE 202 (205)
Q Consensus 160 L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~ 202 (205)
|++++|. ++.++.... .++++|++|++++|. ++.+|.+
T Consensus 162 L~L~~n~---l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~ 199 (270)
T 2o6q_A 162 LRLYNNQ---LKRVPEGAF-DKLTELKTLKLDNNQ-LKRVPEG 199 (270)
T ss_dssp EECCSSC---CSCCCTTTT-TTCTTCCEEECCSSC-CSCCCTT
T ss_pred eEecCCc---CcEeChhHh-ccCCCcCEEECCCCc-CCcCCHH
Confidence 9999996 666765432 689999999999997 8888765
No 28
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=4.4e-18 Score=131.77 Aligned_cols=123 Identities=18% Similarity=0.177 Sum_probs=81.4
Q ss_pred cceeEeecCCCccccch-hhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhc
Q 048752 9 KLEILCLRGSDIKQLPI-EVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELK 87 (205)
Q Consensus 9 ~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~ 87 (205)
+|++|++++|+++.++. .+..+++|++|++++ +.++.++++.+..+++|++|++++|.+..+++ ..+.
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------~~~~ 97 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL----------GAFS 97 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEECT----------TTTT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCC-CcCCccCHHHccCCcCCCEEECCCCccCccCh----------hhhc
Confidence 57788888888877765 477788888888887 46667666557777888888888887777665 4566
Q ss_pred CCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC---C---CCCCCcceEEecCc
Q 048752 88 HLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES---T---NIWRSEFRLRLNNK 143 (205)
Q Consensus 88 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~---~---~~~~~L~~L~l~~~ 143 (205)
.+++|++|++++|.+..++.. .+.+++.|+.+ +.++.+.. | ..+++|++|+++.+
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCccccEEECCCCCccccCch-hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 777777777777777666554 34555555555 44433322 2 24566677776433
No 29
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=3.6e-18 Score=135.64 Aligned_cols=176 Identities=20% Similarity=0.251 Sum_probs=122.1
Q ss_pred cccCcccceeEeecCCCcccc-chhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQL-PIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
.++++++|++|++++|+++.+ |..++.+++|++|++++ +.++.+|.. +. ++|++|++++|.+..+++
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~-~~--~~L~~L~l~~n~i~~~~~-------- 140 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK-NHLVEIPPN-LP--SSLVELRIHDNRIRKVPK-------- 140 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS-SCCCSCCSS-CC--TTCCEEECCSSCCCCCCS--------
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC-CcCCccCcc-cc--ccCCEEECCCCccCccCH--------
Confidence 577899999999999999877 56689999999999998 677788876 32 788888888888887776
Q ss_pred cHHhhcCCCCccEEEEEeeCCee-------------------------ccCCcCcccccceEEeeccccccC-----CCC
Q 048752 82 SLEELKHLPNLTSLELDIHDVNT-------------------------LPRGLFLEKLGKYRIRIGDWYWES-----TNI 131 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~-------------------------~~~~~~~~~L~~L~~~~~~~~~~~-----~~~ 131 (205)
..++.+++|+.|++++|.++. +|.. ...+++.|. +.++.+.. -..
T Consensus 141 --~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~-~~~~L~~L~--l~~n~i~~~~~~~l~~ 215 (332)
T 2ft3_A 141 --GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD-LPETLNELH--LDHNKIQAIELEDLLR 215 (332)
T ss_dssp --GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSS-SCSSCSCCB--CCSSCCCCCCTTSSTT
T ss_pred --hHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcc-ccCCCCEEE--CCCCcCCccCHHHhcC
Confidence 456677777777777776643 2221 112222222 22222222 125
Q ss_pred CCCcceEEecCccc---chhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCCC
Q 048752 132 WRSEFRLRLNNKIC---LKDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPAE 202 (205)
Q Consensus 132 ~~~L~~L~l~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~ 202 (205)
+++|++|+++.+.. .+.++. .+++|+.|++++|. ++.+|..+ ..+++|++|++++|. ++.+|..
T Consensus 216 l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~---l~~lp~~l--~~l~~L~~L~l~~N~-l~~~~~~ 282 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNK---LSRVPAGL--PDLKLLQVVYLHTNN-ITKVGVN 282 (332)
T ss_dssp CTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSC---CCBCCTTG--GGCTTCCEEECCSSC-CCBCCTT
T ss_pred CCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCc---CeecChhh--hcCccCCEEECCCCC-CCccChh
Confidence 66778888854422 122444 57889999998886 66888777 588899999999987 7777654
No 30
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=2.9e-18 Score=134.03 Aligned_cols=168 Identities=24% Similarity=0.260 Sum_probs=136.9
Q ss_pred ccceeEeecCCCccccc-hhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh
Q 048752 8 KKLEILCLRGSDIKQLP-IEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL 86 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l 86 (205)
+++++|++++|.++.++ ..+..+++|++|++++ +.++.++. ...+++|++|++++|.+..+|. .+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~-----------~~ 96 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQV--DGTLPVLGTLDLSHNQLQSLPL-----------LG 96 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEEC--CSCCTTCCEEECCSSCCSSCCC-----------CT
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccC--CCCCCcCCEEECCCCcCCcCch-----------hh
Confidence 57899999999998875 4599999999999999 67888876 3789999999999999988776 67
Q ss_pred cCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-CC----CCCCcceEEecCcc--cchhhHHHhcCCcc
Q 048752 87 KHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-TN----IWRSEFRLRLNNKI--CLKDWLIVQLQGIE 158 (205)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~~----~~~~L~~L~l~~~~--~~~~~~~~~~~~L~ 158 (205)
..+++|+.|++++|.++.+++. .+..++.|+.+ +.++.+.. +. .+++|+.|+++.+. ..+..+...+++|+
T Consensus 97 ~~l~~L~~L~l~~N~l~~l~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 97 QTLPALTVLDVSFNRLTSLPLG-ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCSS-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred ccCCCCCEEECCCCcCcccCHH-HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence 8899999999999999998876 67888888777 77766655 32 56789999996553 22332222689999
Q ss_pred EEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCC
Q 048752 159 DLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSD 195 (205)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~ 195 (205)
.|++++|. ++.+|..+. .+++|+.+++++|+.
T Consensus 176 ~L~L~~N~---l~~ip~~~~--~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 176 TLLLQENS---LYTIPKGFF--GSHLLPFAFLHGNPW 207 (290)
T ss_dssp EEECCSSC---CCCCCTTTT--TTCCCSEEECCSCCB
T ss_pred EEECCCCc---CCccChhhc--ccccCCeEEeCCCCc
Confidence 99999996 778888884 788999999999984
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.74 E-value=3e-18 Score=136.11 Aligned_cols=174 Identities=21% Similarity=0.247 Sum_probs=128.9
Q ss_pred ccceeEeecCCCccccch-hhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh
Q 048752 8 KKLEILCLRGSDIKQLPI-EVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL 86 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l 86 (205)
+++++|++++|.++.++. .+..+++|++|++++ +.++.++++.+..+++|++|++++|.+..+|. .+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-----------~~ 121 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN-NKISKIHEKAFSPLRKLQKLYISKNHLVEIPP-----------NL 121 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECGGGSTTCTTCCEEECCSSCCCSCCS-----------SC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC-CccCccCHhHhhCcCCCCEEECCCCcCCccCc-----------cc
Confidence 689999999999998865 599999999999999 57787755559999999999999999998877 33
Q ss_pred cCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC----CCC-----------------------CCCcceE
Q 048752 87 KHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES----TNI-----------------------WRSEFRL 138 (205)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~----~~~-----------------------~~~L~~L 138 (205)
. ++|++|++++|.++.++.. .+.+++.|+.. +.++.+.. +.. .++|++|
T Consensus 122 ~--~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L 198 (332)
T 2ft3_A 122 P--SSLVELRIHDNRIRKVPKG-VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNEL 198 (332)
T ss_dssp C--TTCCEEECCSSCCCCCCSG-GGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCC
T ss_pred c--ccCCEEECCCCccCccCHh-HhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEE
Confidence 3 7999999999999988876 45666666555 44433321 111 1355666
Q ss_pred EecCcccc---hhhHHHhcCCccEEEeccCchhhHHhHHH-HhhhcCCCCccEEeecCCCCCCCCCCCC
Q 048752 139 RLNNKICL---KDWLIVQLQGIEDLELRKLQEQDVIYFAN-ELVKVGSSQLKFLRIHGCSDALNPPAES 203 (205)
Q Consensus 139 ~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~~~~~L~~L~l~~~~~l~~lp~~~ 203 (205)
+++.+... +..+. .+++|+.|++++|. ++.++. .+ ..+++|++|++++|. ++.+|.++
T Consensus 199 ~l~~n~i~~~~~~~l~-~l~~L~~L~L~~N~---l~~~~~~~~--~~l~~L~~L~L~~N~-l~~lp~~l 260 (332)
T 2ft3_A 199 HLDHNKIQAIELEDLL-RYSKLYRLGLGHNQ---IRMIENGSL--SFLPTLRELHLDNNK-LSRVPAGL 260 (332)
T ss_dssp BCCSSCCCCCCTTSST-TCTTCSCCBCCSSC---CCCCCTTGG--GGCTTCCEEECCSSC-CCBCCTTG
T ss_pred ECCCCcCCccCHHHhc-CCCCCCEEECCCCc---CCcCChhHh--hCCCCCCEEECCCCc-CeecChhh
Confidence 66433211 12344 57889999999886 555544 45 588999999999997 88888754
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.74 E-value=8.2e-19 Score=138.50 Aligned_cols=188 Identities=14% Similarity=0.119 Sum_probs=131.5
Q ss_pred cccCcccceeEeecCCCcc-ccchhhccccccceEeccCCCCCc-ccChHHhhcccccceeecCCCccc-hhhhhhhcc-
Q 048752 3 VIGDLKKLEILCLRGSDIK-QLPIEVGQLTWLTLLDLRECRKLE-VIPPNVLSNLSHLEELCISRRSFQ-KWEVEVEGA- 78 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~-~lp~~~~~~l~~L~~L~l~~~~~~-~~~~~i~~~- 78 (205)
.|+++++|++|++++|+++ .+|..+..+++|++|++++| .+. .+|.. +..+++|++|++++|.+. .+|..+...
T Consensus 96 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 173 (313)
T 1ogq_A 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFS 173 (313)
T ss_dssp GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC-ccCCcCChH-HhcCCCCCeEECcCCcccCcCCHHHhhhh
Confidence 4667788888888888776 66777888888888888874 444 56665 777888888888877776 444422220
Q ss_pred -------------ccccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC--C--CCCCCcceEEe
Q 048752 79 -------------KNASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES--T--NIWRSEFRLRL 140 (205)
Q Consensus 79 -------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~--~--~~~~~L~~L~l 140 (205)
.+..+..++.++ |+.|++++|.++...+. .+..++.|+.. +.++.+.. + ..+++|++|++
T Consensus 174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L 251 (313)
T 1ogq_A 174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL 251 (313)
T ss_dssp TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG-GCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEEC
T ss_pred hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH-HHhcCCCCCEEECCCCceeeecCcccccCCCCEEEC
Confidence 012234556665 88888888877765554 55677777776 66655543 2 36789999999
Q ss_pred cCcc---cchhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCC
Q 048752 141 NNKI---CLKDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPP 200 (205)
Q Consensus 141 ~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp 200 (205)
+.+. ..+.++. .+++|+.|++++|. ....+|.. ..+++|+.+++++|+.+...|
T Consensus 252 s~N~l~~~~p~~l~-~l~~L~~L~Ls~N~--l~~~ip~~---~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 252 RNNRIYGTLPQGLT-QLKFLHSLNVSFNN--LCGEIPQG---GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CSSCCEECCCGGGG-GCTTCCEEECCSSE--EEEECCCS---TTGGGSCGGGTCSSSEEESTT
T ss_pred cCCcccCcCChHHh-cCcCCCEEECcCCc--ccccCCCC---ccccccChHHhcCCCCccCCC
Confidence 6553 3455666 68999999999997 44466654 379999999999999766544
No 33
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.74 E-value=6.5e-18 Score=147.99 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=20.3
Q ss_pred cCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCC
Q 048752 154 LQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPP 200 (205)
Q Consensus 154 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp 200 (205)
+++|+.|++++|+ ....+|..+ ..+++|++|++++|+--..+|
T Consensus 679 L~~L~~LdLs~N~--l~g~ip~~l--~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 679 LRGLNILDLSSNK--LDGRIPQAM--SALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CTTCCEEECCSSC--CEECCCGGG--GGCCCCSEEECCSSEEEEECC
T ss_pred CCCCCEEECCCCc--ccCcCChHH--hCCCCCCEEECcCCcccccCC
Confidence 4555555555554 333444444 355555555555554333333
No 34
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=3.8e-18 Score=132.13 Aligned_cols=176 Identities=15% Similarity=0.165 Sum_probs=134.6
Q ss_pred cccCcccceeEeecCCCccccch-hhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPI-EVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
.+.++++|++|++++|.++.++. .+..+++|++|++++ +.++.++.+.+..+++|++|++++|.+..+++
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------- 117 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLEN-------- 117 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTSCCCCSTT--------
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC-CccCccChhhhcCCccccEEECCCCCccccCc--------
Confidence 57789999999999999998876 589999999999999 67888876668999999999999999988776
Q ss_pred cHHhhcCCCCccEEEEEeeCCeecc-CCcCcccccceEEe-eccccccC-C-C---CCCCcc----eEEecCcccc--hh
Q 048752 82 SLEELKHLPNLTSLELDIHDVNTLP-RGLFLEKLGKYRIR-IGDWYWES-T-N---IWRSEF----RLRLNNKICL--KD 148 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~~~-~~~~~~~~-~-~---~~~~L~----~L~l~~~~~~--~~ 148 (205)
..++.+++|++|++++|.++.+. +. .+.+++.|+.. +.++.+.. + . .+..++ .|+++.+... +.
T Consensus 118 --~~~~~l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~ 194 (276)
T 2z62_A 118 --FPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (276)
T ss_dssp --CCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred --hhcccCCCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc
Confidence 46889999999999999998743 22 45667777766 66655544 2 2 233344 6777554322 22
Q ss_pred hHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCC
Q 048752 149 WLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSD 195 (205)
Q Consensus 149 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~ 195 (205)
... ...+|+.|++++|. ++.+|.... ..+++|++|++++|+.
T Consensus 195 ~~~-~~~~L~~L~L~~n~---l~~~~~~~~-~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 195 GAF-KEIRLKELALDTNQ---LKSVPDGIF-DRLTSLQKIWLHTNPW 236 (276)
T ss_dssp TSS-CSCCEEEEECCSSC---CSCCCTTTT-TTCCSCCEEECCSSCB
T ss_pred ccc-CCCcccEEECCCCc---eeecCHhHh-cccccccEEEccCCcc
Confidence 222 24589999999996 677776643 6899999999999983
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.73 E-value=4.6e-18 Score=137.81 Aligned_cols=175 Identities=18% Similarity=0.213 Sum_probs=109.8
Q ss_pred CcccceeEeecCCCccccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHH
Q 048752 6 DLKKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLE 84 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~ 84 (205)
.+.++++|+++++.++.+|.. +..+++|++|++++ +.++.+++..+..+++|++|++++|.+..+++ .
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP----------H 111 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCCCCT----------T
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCC-CcccccChhhccCCCCcCEEECCCCCCCcCCH----------H
Confidence 357788888888888888776 67788888888888 56777766557888888888888888877766 4
Q ss_pred hhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC--C---CCCCCcceEEecCcccchhhHH-------
Q 048752 85 ELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES--T---NIWRSEFRLRLNNKICLKDWLI------- 151 (205)
Q Consensus 85 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~--~---~~~~~L~~L~l~~~~~~~~~~~------- 151 (205)
.++.+++|++|++++|.++.++.. .+.+++.|+.. +.++.+.. + ..+++|++|+++.+......+.
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~ 190 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH 190 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSE
T ss_pred HhcCCCCCCEEECCCCccCcCCHH-HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccce
Confidence 566677777777777777666655 34445555444 44433332 1 1445566666643321111111
Q ss_pred --------------------------------HhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCC
Q 048752 152 --------------------------------VQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNP 199 (205)
Q Consensus 152 --------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l 199 (205)
..+++|+.|++++|. ++..+ .+ ..+++|++|++++|. ++.+
T Consensus 191 L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~---l~~~~-~l--~~l~~L~~L~Ls~n~-l~~~ 263 (390)
T 3o6n_A 191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN---LTDTA-WL--LNYPGLVEVDLSYNE-LEKI 263 (390)
T ss_dssp EECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSC---CCCCG-GG--GGCTTCSEEECCSSC-CCEE
T ss_pred eecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCC---CcccH-HH--cCCCCccEEECCCCc-CCCc
Confidence 012456666666664 33332 34 478888888888886 5544
No 36
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=9.9e-18 Score=146.83 Aligned_cols=183 Identities=17% Similarity=0.097 Sum_probs=119.7
Q ss_pred cccCcccceeEeecCCCcc-ccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 3 VIGDLKKLEILCLRGSDIK-QLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
.++++++|++|++++|.++ .+|..++.+++|++|++++|.....+|.. +..+++|++|++++|++....+
T Consensus 437 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p-------- 507 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIP-------- 507 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCC--------
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-HhcCCCCCEEEccCCccCCcCC--------
Confidence 4566777888888887775 56767777777888887775433356665 7777777777777777764322
Q ss_pred cHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-ecccccc---------------------------------
Q 048752 82 SLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWE--------------------------------- 127 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~--------------------------------- 127 (205)
..++.+++|+.|++++|.+....+. .+..++.|+.. +.++.+.
T Consensus 508 --~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (768)
T 3rgz_A 508 --KWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584 (768)
T ss_dssp --GGGGGCTTCCEEECCSSCCEEECCG-GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred --hHHhcCCCCCEEECCCCcccCcCCH-HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence 2555555566666665555532222 22333333332 2221111
Q ss_pred -------------------------------------C--C---CCCCCcceEEecCcc---cchhhHHHhcCCccEEEe
Q 048752 128 -------------------------------------S--T---NIWRSEFRLRLNNKI---CLKDWLIVQLQGIEDLEL 162 (205)
Q Consensus 128 -------------------------------------~--~---~~~~~L~~L~l~~~~---~~~~~~~~~~~~L~~L~l 162 (205)
+ | ..+++|++|+++.+. ..+.+++ .++.|+.|++
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~-~l~~L~~L~L 663 (768)
T 3rgz_A 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFILNL 663 (768)
T ss_dssp TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG-GCTTCCEEEC
T ss_pred ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh-ccccCCEEeC
Confidence 0 1 134678889996553 3466677 6999999999
Q ss_pred ccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCCC
Q 048752 163 RKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPAE 202 (205)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~ 202 (205)
++|. ....+|..+ ..+++|++|++++|.--..+|..
T Consensus 664 s~N~--l~g~ip~~l--~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 664 GHND--ISGSIPDEV--GDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp CSSC--CCSCCCGGG--GGCTTCCEEECCSSCCEECCCGG
T ss_pred cCCc--cCCCCChHH--hCCCCCCEEECCCCcccCcCChH
Confidence 9998 555789888 69999999999999954577754
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=8.5e-18 Score=131.96 Aligned_cols=182 Identities=16% Similarity=0.166 Sum_probs=112.2
Q ss_pred ceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhh---hhhhc---------
Q 048752 10 LEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWE---VEVEG--------- 77 (205)
Q Consensus 10 L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~---~~i~~--------- 77 (205)
-+.++.++++++.+|..+. ++|++|++++ +.++.+|.+++..+++|++|++++|.+...+ ..+.+
T Consensus 9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~-n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcccCCCCCC--CCCCEEECCC-CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 4578899999999998654 7999999999 6788999887899999999999999987552 21110
Q ss_pred --c-ccccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC--C---CCCCCcceEEecCccc---
Q 048752 78 --A-KNASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES--T---NIWRSEFRLRLNNKIC--- 145 (205)
Q Consensus 78 --~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~--~---~~~~~L~~L~l~~~~~--- 145 (205)
. .......+..+++|++|++++|.++.++....+..++.|+.. +.++.+.. + ..+++|++|+++.+..
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 0 111122344455555555555555554431133444444444 44333322 1 2456667777744422
Q ss_pred -chhhHHHhcCCccEEEeccCchhhHHhH-HHHhhhcCCCCccEEeecCCCCCCCCCC
Q 048752 146 -LKDWLIVQLQGIEDLELRKLQEQDVIYF-ANELVKVGSSQLKFLRIHGCSDALNPPA 201 (205)
Q Consensus 146 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~~~~~~L~~L~l~~~~~l~~lp~ 201 (205)
.+..+. .+++|+.|++++|. ++.+ |..+ ..+++|++|++++|. ++.++.
T Consensus 166 ~~~~~~~-~l~~L~~L~Ls~n~---l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~ 216 (306)
T 2z66_A 166 FLPDIFT-ELRNLTFLDLSQCQ---LEQLSPTAF--NSLSSLQVLNMSHNN-FFSLDT 216 (306)
T ss_dssp EECSCCT-TCTTCCEEECTTSC---CCEECTTTT--TTCTTCCEEECTTSC-CSBCCS
T ss_pred cchhHHh-hCcCCCEEECCCCC---cCCcCHHHh--cCCCCCCEEECCCCc-cCccCh
Confidence 223333 46777777777775 4444 4444 467788888888876 555543
No 38
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=1.5e-17 Score=131.05 Aligned_cols=169 Identities=17% Similarity=0.214 Sum_probs=136.2
Q ss_pred cCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHH
Q 048752 5 GDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLE 84 (205)
Q Consensus 5 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~ 84 (205)
..+++|+.|++++|.++.+| .+..+++|++|++++ +.+..++. +..+++|++|++++|.+..++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~-n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~------------ 101 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKD-NQITDLAP--LKNLTKITELELSGNPLKNVS------------ 101 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCS-SCCCCCGG--GTTCCSCCEEECCSCCCSCCG------------
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccC-CcCCCChh--HccCCCCCEEEccCCcCCCch------------
Confidence 35789999999999999988 589999999999999 57888887 899999999999999988653
Q ss_pred hhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC---CCCCCCcceEEecCccc-chhhHHHhcCCccE
Q 048752 85 ELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES---TNIWRSEFRLRLNNKIC-LKDWLIVQLQGIED 159 (205)
Q Consensus 85 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~---~~~~~~L~~L~l~~~~~-~~~~~~~~~~~L~~ 159 (205)
.+..+++|+.|++++|.++.++. +..++.|+.+ +.++.+.. ...+++|++|+++.+.. ....+. .+++|+.
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~-~l~~L~~ 177 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLA-NLSKLTT 177 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCCGG---GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGT-TCTTCCE
T ss_pred hhcCCCCCCEEECCCCCCCCchh---hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhc-CCCCCCE
Confidence 57899999999999999998764 4666666666 55555544 23678999999965532 222244 6899999
Q ss_pred EEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCC
Q 048752 160 LELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPP 200 (205)
Q Consensus 160 L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp 200 (205)
|++++|. ++.++. + ..+++|++|++++|. ++.++
T Consensus 178 L~l~~n~---l~~~~~-l--~~l~~L~~L~L~~N~-l~~~~ 211 (308)
T 1h6u_A 178 LKADDNK---ISDISP-L--ASLPNLIEVHLKNNQ-ISDVS 211 (308)
T ss_dssp EECCSSC---CCCCGG-G--GGCTTCCEEECTTSC-CCBCG
T ss_pred EECCCCc---cCcChh-h--cCCCCCCEEEccCCc-cCccc
Confidence 9999996 566664 4 589999999999998 76665
No 39
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=1.2e-17 Score=129.34 Aligned_cols=173 Identities=18% Similarity=0.211 Sum_probs=134.0
Q ss_pred cccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh
Q 048752 7 LKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL 86 (205)
Q Consensus 7 l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l 86 (205)
+.++..+++.++.+..... ...+++|+.|++++ +.++.++. +..+++|++|++++|.+..++ .+
T Consensus 18 ~~~l~~l~l~~~~~~~~~~-~~~l~~L~~L~l~~-~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~------------~l 81 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAVT-QNELNSIDQIIANN-SDIKSVQG--IQYLPNVRYLALGGNKLHDIS------------AL 81 (272)
T ss_dssp HHHHHHHHHTCSCTTSEEC-HHHHTTCCEEECTT-SCCCCCTT--GGGCTTCCEEECTTSCCCCCG------------GG
T ss_pred HHHHHHHHhcCcccccccc-cccccceeeeeeCC-CCcccccc--cccCCCCcEEECCCCCCCCch------------hh
Confidence 3455666777777766644 67899999999999 56787775 889999999999999988643 57
Q ss_pred cCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-C----CCCCCcceEEecCccc--ch-hhHHHhcCCc
Q 048752 87 KHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-T----NIWRSEFRLRLNNKIC--LK-DWLIVQLQGI 157 (205)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~----~~~~~L~~L~l~~~~~--~~-~~~~~~~~~L 157 (205)
+.+++|++|++++|.++.+++. .+.+++.|+.+ +.++.+.. + ..+++|++|+++.+.. .+ ..+. .+++|
T Consensus 82 ~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L 159 (272)
T 3rfs_A 82 KELTNLTYLILTGNQLQSLPNG-VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD-KLTNL 159 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTC
T ss_pred cCCCCCCEEECCCCccCccChh-HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhc-cCccC
Confidence 8999999999999999998876 56777777777 66666555 2 2578899999965532 22 2234 68999
Q ss_pred cEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCCC
Q 048752 158 EDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPAE 202 (205)
Q Consensus 158 ~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~ 202 (205)
+.|++++|. ++.++.... ..+++|++|++++|. ++.+|++
T Consensus 160 ~~L~l~~n~---l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~ 199 (272)
T 3rfs_A 160 TELDLSYNQ---LQSLPEGVF-DKLTQLKDLRLYQNQ-LKSVPDG 199 (272)
T ss_dssp CEEECCSSC---CCCCCTTTT-TTCTTCCEEECCSSC-CSCCCTT
T ss_pred CEEECCCCC---cCccCHHHh-cCCccCCEEECCCCc-CCccCHH
Confidence 999999996 566665533 689999999999998 7777764
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=1.1e-17 Score=142.51 Aligned_cols=180 Identities=13% Similarity=0.065 Sum_probs=106.5
Q ss_pred ccCcccceeEeecCCCcccc---chhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhcccc
Q 048752 4 IGDLKKLEILCLRGSDIKQL---PIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKN 80 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~ 80 (205)
++.+++|++|++++|.++.+ |..+..+++|++|++++ +.+..+|.. +..+++|++|++++|.+...++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~------- 416 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF-NGAIIMSAN-FMGLEELQHLDFQHSTLKRVTE------- 416 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS-CSEEEECCC-CTTCTTCCEEECTTSEEESTTT-------
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC-Cccccchhh-ccCCCCCCeeECCCCccCCccC-------
Confidence 44667777777777777655 56677777777777777 456667754 6777777777777777765543
Q ss_pred ccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC---C---CCCCCcceEEecCccc---chhhH
Q 048752 81 ASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES---T---NIWRSEFRLRLNNKIC---LKDWL 150 (205)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~---~---~~~~~L~~L~l~~~~~---~~~~~ 150 (205)
...+..+++|+.|++++|.+....+. .+.+++.|+.. +.++.+.+ | ..+++|++|+++.+.. .+.++
T Consensus 417 --~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 417 --FSAFLSLEKLLYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp --TTTTTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred --hhhhhccccCCEEECcCCCCCccchh-hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence 12456666777777777766664443 34555555544 44433321 1 2455666666644321 12233
Q ss_pred HHhcCCccEEEeccCchhhHHhH-HHHhhhcCCCCccEEeecCCCCCCCCCCC
Q 048752 151 IVQLQGIEDLELRKLQEQDVIYF-ANELVKVGSSQLKFLRIHGCSDALNPPAE 202 (205)
Q Consensus 151 ~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~~~~~~L~~L~l~~~~~l~~lp~~ 202 (205)
. .+++|+.|++++|. +..+ |..+ .++++|++|++++|. ++++|..
T Consensus 494 ~-~l~~L~~L~Ls~N~---l~~~~~~~~--~~l~~L~~L~l~~N~-l~~~p~~ 539 (606)
T 3vq2_A 494 D-TLHRLQLLNMSHNN---LLFLDSSHY--NQLYSLSTLDCSFNR-IETSKGI 539 (606)
T ss_dssp T-TCTTCCEEECCSSC---CSCEEGGGT--TTCTTCCEEECTTSC-CCCEESC
T ss_pred c-ccccCCEEECCCCc---CCCcCHHHc--cCCCcCCEEECCCCc-CcccCHh
Confidence 3 45666666666665 3333 4444 456666666666665 5555543
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.72 E-value=9e-17 Score=128.09 Aligned_cols=186 Identities=17% Similarity=0.140 Sum_probs=110.3
Q ss_pred ccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhh----------
Q 048752 4 IGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEV---------- 73 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~---------- 73 (205)
+..+++|++|++++|.....+..+..+++|++|++++ +.+..++. +..+++|++|++++|.+..+++
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 204 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE-SKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYF 204 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEE
T ss_pred hccCCceeEEECCCCCCcccccchhhCCCCcEEEecC-CCcCCchh--hccCCCCCEEEccCCcccccccccCCCcccee
Confidence 4566677777777774433333366667777777766 34555544 5666666666666666655543
Q ss_pred hhhccccccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC---CCCCCCcceEEecCccc-chh
Q 048752 74 EVEGAKNASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES---TNIWRSEFRLRLNNKIC-LKD 148 (205)
Q Consensus 74 ~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~---~~~~~~L~~L~l~~~~~-~~~ 148 (205)
.+.+........+..+++|++|++++|.++.++. +..++.|+.. +.++.+.. ...+++|++|+++.+.. ...
T Consensus 205 ~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 281 (347)
T 4fmz_A 205 TAYVNQITDITPVANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS 281 (347)
T ss_dssp ECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred ecccCCCCCCchhhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCCh
Confidence 0011111111236677888888888888877664 2444444444 44433333 23677788888854422 223
Q ss_pred hHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCC
Q 048752 149 WLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPA 201 (205)
Q Consensus 149 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~ 201 (205)
.+. .+++|+.|++++|. .....|..+ .++++|++|++++|+ ++.+++
T Consensus 282 ~~~-~l~~L~~L~L~~n~--l~~~~~~~l--~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 282 VLN-NLSQLNSLFLNNNQ--LGNEDMEVI--GGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp GGG-GCTTCSEEECCSSC--CCGGGHHHH--HTCTTCSEEECCSSS-CCCCGG
T ss_pred hhc-CCCCCCEEECcCCc--CCCcChhHh--hccccCCEEEccCCc-cccccC
Confidence 344 57888888888886 333344555 578888888888887 665543
No 42
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=2.5e-18 Score=135.64 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=30.2
Q ss_pred cccceeEeecCCCcc-ccchhh--ccccccceEeccCCCCCcccChHHhhcc-----cccceeecCCCccchhh
Q 048752 7 LKKLEILCLRGSDIK-QLPIEV--GQLTWLTLLDLRECRKLEVIPPNVLSNL-----SHLEELCISRRSFQKWE 72 (205)
Q Consensus 7 l~~L~~L~l~~~~i~-~lp~~i--~~l~~L~~L~l~~c~~l~~lp~~~~~~l-----~~L~~L~l~~~~~~~~~ 72 (205)
+++|++|++++|+++ .+|..+ ..+++|++|++++ +.+..+|.. +..+ ++|++|++++|++..++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN-VSWATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFS 165 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEES-CBCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccC-CCCcchhHH-HHHHHHhhcCCCcEEEeeCCCCccch
Confidence 445555555555554 344433 4455555555555 334433432 4444 45555555555554444
No 43
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.72 E-value=9.4e-18 Score=144.18 Aligned_cols=121 Identities=11% Similarity=0.129 Sum_probs=69.8
Q ss_pred cccCcccceeEeecCCC-cc--ccchhhccc------cccceEeccCCCCCcccCh--HHhhcccccceeecCCCccc-h
Q 048752 3 VIGDLKKLEILCLRGSD-IK--QLPIEVGQL------TWLTLLDLRECRKLEVIPP--NVLSNLSHLEELCISRRSFQ-K 70 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~-i~--~lp~~i~~l------~~L~~L~l~~c~~l~~lp~--~~~~~l~~L~~L~l~~~~~~-~ 70 (205)
.++++++|++|++++|+ ++ .+|..++.+ ++|++|++++ +.++.+|. . +..+++|++|++++|++. .
T Consensus 268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-n~l~~ip~~~~-l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY-NNLKTFPVETS-LQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS-SCCSSCCCHHH-HTTCTTCCEEECCSCCCEEE
T ss_pred HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC-CcCCccCchhh-hccCCCCCEEeCcCCcCccc
Confidence 35566666666666665 65 366666555 6666666666 34446665 4 666666666666666665 4
Q ss_pred hhhhhhc------------cccccHHhhcCCCC-ccEEEEEeeCCeeccCCcCcccccceEEe-eccccc
Q 048752 71 WEVEVEG------------AKNASLEELKHLPN-LTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYW 126 (205)
Q Consensus 71 ~~~~i~~------------~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~ 126 (205)
+| .+.. .....+..++.+++ |+.|++++|.++.+|..+....+..|+.. +.++.+
T Consensus 346 ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp CC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred hh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcC
Confidence 44 2211 11122346777787 88888888888777764422222344444 444443
No 44
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.72 E-value=4.8e-17 Score=129.65 Aligned_cols=100 Identities=25% Similarity=0.342 Sum_probs=68.7
Q ss_pred CcccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhc----
Q 048752 2 SVIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEG---- 77 (205)
Q Consensus 2 ~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~---- 77 (205)
+.++.+++|++|++++|.++.+|. +..+++|++|++++ +.++.+|. +..+++|++|++++|.+..+++ +..
T Consensus 60 ~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~-n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L 134 (347)
T 4fmz_A 60 QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGT-NKITDISA--LQNLTNLRELYLNEDNISDISP-LANLTKM 134 (347)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTCTTC
T ss_pred hhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccC-CcccCchH--HcCCCcCCEEECcCCcccCchh-hccCCce
Confidence 446678888888888888888877 88888888888888 46676653 7888888888888888776654 111
Q ss_pred -------c-ccccHHhhcCCCCccEEEEEeeCCeecc
Q 048752 78 -------A-KNASLEELKHLPNLTSLELDIHDVNTLP 106 (205)
Q Consensus 78 -------~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 106 (205)
. .......+..+++|+.|++++|.+..++
T Consensus 135 ~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (347)
T 4fmz_A 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT 171 (347)
T ss_dssp CEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred eEEECCCCCCcccccchhhCCCCcEEEecCCCcCCch
Confidence 1 2222234556666666666666555544
No 45
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=4.5e-18 Score=134.44 Aligned_cols=185 Identities=13% Similarity=0.107 Sum_probs=113.8
Q ss_pred CcccceeEeecCCCccccc-hhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhh-------hhc
Q 048752 6 DLKKLEILCLRGSDIKQLP-IEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVE-------VEG 77 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~-------i~~ 77 (205)
.+++|++|++++|+++.++ ..++.+++|++|++++ +.+...++ +..+++|++|++++|.+..++.. +.+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~ 108 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS-NVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAAN 108 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTT-SCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCS
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCC-CcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCC
Confidence 4668999999999998776 4588999999999998 56776665 78889999999998888765531 001
Q ss_pred cccccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC--C----CCCCCcceEEecCcccc-hhh
Q 048752 78 AKNASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES--T----NIWRSEFRLRLNNKICL-KDW 149 (205)
Q Consensus 78 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~--~----~~~~~L~~L~l~~~~~~-~~~ 149 (205)
...... ....+++|++|++++|.++.+++. .+..++.|+.+ +.++.+.. + ..+++|++|+++.+... ...
T Consensus 109 n~l~~~-~~~~~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 186 (317)
T 3o53_A 109 NNISRV-SCSRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (317)
T ss_dssp SCCSEE-EECCCSSCEEEECCSSCCCSGGGB-CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CccCCc-CccccCCCCEEECCCCCCCCccch-hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc
Confidence 000000 112355667777777766666554 44555566555 44444333 1 13466677776443211 111
Q ss_pred HHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCCC
Q 048752 150 LIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPAE 202 (205)
Q Consensus 150 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~ 202 (205)
.. .+++|+.|++++|. ++.+|..+ ..+++|++|++++|. ++.+|..
T Consensus 187 ~~-~l~~L~~L~Ls~N~---l~~l~~~~--~~l~~L~~L~L~~N~-l~~l~~~ 232 (317)
T 3o53_A 187 QV-VFAKLKTLDLSSNK---LAFMGPEF--QSAAGVTWISLRNNK-LVLIEKA 232 (317)
T ss_dssp CC-CCTTCCEEECCSSC---CCEECGGG--GGGTTCSEEECTTSC-CCEECTT
T ss_pred cc-ccccCCEEECCCCc---CCcchhhh--cccCcccEEECcCCc-ccchhhH
Confidence 11 25667777776664 45555554 466777777777765 5666554
No 46
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=1.7e-17 Score=129.76 Aligned_cols=170 Identities=25% Similarity=0.277 Sum_probs=133.4
Q ss_pred ccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccH
Q 048752 4 IGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASL 83 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~ 83 (205)
+..+++|++|++++|.++.++. +..+++|++|++++ +.++.+++ +..+++|++|++++|.+..++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~----------- 106 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNG-NKLTDIKP--LANLKNLGWLFLDENKVKDLS----------- 106 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCCGG-----------
T ss_pred hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccC-CccCCCcc--cccCCCCCEEECCCCcCCCCh-----------
Confidence 3467889999999999998875 88999999999999 67888876 889999999999999988643
Q ss_pred HhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC---CCCCCCcceEEecCcccc-hhhHHHhcCCcc
Q 048752 84 EELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES---TNIWRSEFRLRLNNKICL-KDWLIVQLQGIE 158 (205)
Q Consensus 84 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~---~~~~~~L~~L~l~~~~~~-~~~~~~~~~~L~ 158 (205)
.++.+++|+.|++++|.++.++ .+..++.|+.+ +.++.+.. ...+++|++|+++.+... ...+. .+++|+
T Consensus 107 -~l~~l~~L~~L~L~~n~i~~~~---~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~-~l~~L~ 181 (291)
T 1h6t_A 107 -SLKDLKKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLA-GLTKLQ 181 (291)
T ss_dssp -GGTTCTTCCEEECTTSCCCCCG---GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGT-TCTTCC
T ss_pred -hhccCCCCCEEECCCCcCCCCh---hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhc-CCCccC
Confidence 4889999999999999998875 34566666666 55555444 337889999999655322 22244 689999
Q ss_pred EEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCC
Q 048752 159 DLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPP 200 (205)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp 200 (205)
.|++++|. ++.++. + ..+++|+.|++++|+ ++..|
T Consensus 182 ~L~L~~N~---i~~l~~-l--~~l~~L~~L~l~~n~-i~~~~ 216 (291)
T 1h6t_A 182 NLYLSKNH---ISDLRA-L--AGLKNLDVLELFSQE-CLNKP 216 (291)
T ss_dssp EEECCSSC---CCBCGG-G--TTCTTCSEEEEEEEE-EECCC
T ss_pred EEECCCCc---CCCChh-h--ccCCCCCEEECcCCc-ccCCc
Confidence 99999996 667764 5 589999999999997 55444
No 47
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.71 E-value=2.4e-17 Score=141.63 Aligned_cols=192 Identities=14% Similarity=0.102 Sum_probs=105.6
Q ss_pred cccCcccceeEeecCCCccccchhhccccc-cceEeccCCCCCcccChHHhhccc--ccceeecCCCccchhhh-hhh--
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIEVGQLTW-LTLLDLRECRKLEVIPPNVLSNLS--HLEELCISRRSFQKWEV-EVE-- 76 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~-L~~L~l~~c~~l~~lp~~~~~~l~--~L~~L~l~~~~~~~~~~-~i~-- 76 (205)
.++++++|++|++++|+++.+|..+..+++ |++|++++ +.++.+|.. +..+. +|++|++++|.+....+ .+.
T Consensus 348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~-N~l~~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH-NKLKYIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS-SCCSSCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC-CcCcccchh-hhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 344555666666666666666666666666 66666666 344455543 33322 44455554444433211 000
Q ss_pred ----------------cc-ccccH-HhhcCCCCccEEEEEeeCCeeccCCcCccc-------ccceEEe-eccccccC-C
Q 048752 77 ----------------GA-KNASL-EELKHLPNLTSLELDIHDVNTLPRGLFLEK-------LGKYRIR-IGDWYWES-T 129 (205)
Q Consensus 77 ----------------~~-~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-------L~~L~~~-~~~~~~~~-~ 129 (205)
+. ....+ ..+..+++|+.|++++|.++.+|... +.. ++.|+.+ +.++.+.. |
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 504 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS-LKDENENFKNTYLLTSIDLRFNKLTKLS 504 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSS-SEETTEECTTGGGCCEEECCSSCCCBCC
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHH-hccccccccccCCccEEECcCCcCCccC
Confidence 00 00011 33456777788888777777766652 221 1244444 44443333 2
Q ss_pred C-----CCCCcceEEecCcc--cchhhHHHhcCCccEEEecc------CchhhHHhHHHHhhhcCCCCccEEeecCCCCC
Q 048752 130 N-----IWRSEFRLRLNNKI--CLKDWLIVQLQGIEDLELRK------LQEQDVIYFANELVKVGSSQLKFLRIHGCSDA 196 (205)
Q Consensus 130 ~-----~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l 196 (205)
. .+++|++|+++.+. ..+.++. .+++|+.|++++ |. ....+|..+ ..+++|++|++++|. +
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~Ls~N~~ls~N~--l~~~~p~~l--~~l~~L~~L~Ls~N~-l 578 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNSFSKFPTQPL-NSSTLKGFGIRNQRDAQGNR--TLREWPEGI--TLCPSLTQLQIGSND-I 578 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSSCCCGGG-GCSSCCEEECCSCBCTTCCB--CCCCCCTTG--GGCSSCCEEECCSSC-C
T ss_pred hhhhhccCCCcCEEECCCCCCCCcChhhh-cCCCCCEEECCCCcccccCc--ccccChHHH--hcCCCCCEEECCCCc-C
Confidence 2 56677888885442 2344455 578888888843 43 345567677 478888888888887 6
Q ss_pred CCCCCCC
Q 048752 197 LNPPAES 203 (205)
Q Consensus 197 ~~lp~~~ 203 (205)
+.+|..+
T Consensus 579 ~~ip~~~ 585 (636)
T 4eco_A 579 RKVNEKI 585 (636)
T ss_dssp CBCCSCC
T ss_pred CccCHhH
Confidence 7777653
No 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.71 E-value=7.1e-17 Score=136.00 Aligned_cols=175 Identities=17% Similarity=0.155 Sum_probs=122.9
Q ss_pred ccceeEeecCCCccccc-hhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh
Q 048752 8 KKLEILCLRGSDIKQLP-IEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL 86 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l 86 (205)
++|++|++++|+++.++ ..++.+++|++|++++ +.+..++++.+..+++|++|++++|.+...++ ..+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------~~~ 94 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKS-SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS----------SWF 94 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCCSCCH----------HHH
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCC-CCcCccChhhccccccCCEEECCCCccCccCH----------HHh
Confidence 57888999998888774 4588889999999988 56777775558888899999998888888777 568
Q ss_pred cCCCCccEEEEEeeCCeeccCCcCcccccceEEe-ecccc-ccC-----CCCCCCcceEEecCcc---cchhhHHHhcCC
Q 048752 87 KHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWY-WES-----TNIWRSEFRLRLNNKI---CLKDWLIVQLQG 156 (205)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~-~~~-----~~~~~~L~~L~l~~~~---~~~~~~~~~~~~ 156 (205)
+.+++|++|++++|.++.++....+.+++.|+.. +.++. +.. -..+++|++|+++.+. ..+.++. .+++
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~ 173 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK-SIRD 173 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSE
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh-cccc
Confidence 8888888888888888764321134555555555 44433 211 2256677888884432 1234455 5778
Q ss_pred ccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCC
Q 048752 157 IEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNP 199 (205)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l 199 (205)
|+.|++++|. ...+|..+. ..+++|++|++++|. ++..
T Consensus 174 L~~L~l~~n~---~~~~~~~~~-~~l~~L~~L~L~~n~-l~~~ 211 (549)
T 2z81_A 174 IHHLTLHLSE---SAFLLEIFA-DILSSVRYLELRDTN-LARF 211 (549)
T ss_dssp EEEEEEECSB---STTHHHHHH-HSTTTBSEEEEESCB-CTTC
T ss_pred CceEecccCc---ccccchhhH-hhcccccEEEccCCc-cccc
Confidence 8888888775 455665543 567888888888887 5543
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=5e-18 Score=133.86 Aligned_cols=175 Identities=14% Similarity=0.013 Sum_probs=132.5
Q ss_pred cCcccceeEeecCCCccccchhhccc-----cccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccc
Q 048752 5 GDLKKLEILCLRGSDIKQLPIEVGQL-----TWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAK 79 (205)
Q Consensus 5 ~~l~~L~~L~l~~~~i~~lp~~i~~l-----~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~ 79 (205)
+.+++|++|++++|+++.+|..++.+ ++|++|++++ +.+..++++.+..+++|++|++++|++....+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------ 190 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELGERG------ 190 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH------
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhccCCCCCEEECCCCCcCcchH------
Confidence 78999999999999999888878887 9999999999 67788885559999999999999999764311
Q ss_pred cccHHhh--cCCCCccEEEEEeeCCeeccCCc--CcccccceEEe-eccccccC-C--C---CCCCcceEEecCcccc--
Q 048752 80 NASLEEL--KHLPNLTSLELDIHDVNTLPRGL--FLEKLGKYRIR-IGDWYWES-T--N---IWRSEFRLRLNNKICL-- 146 (205)
Q Consensus 80 ~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~~~-~~~~~~~~-~--~---~~~~L~~L~l~~~~~~-- 146 (205)
.+..+ +.+++|++|++++|.++.++... .+..++.|+.. +.++.+.+ + . .+++|++|+++.+...
T Consensus 191 --~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i 268 (312)
T 1wwl_A 191 --LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268 (312)
T ss_dssp --HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred --HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh
Confidence 01244 88999999999999998543221 23445566555 56655544 2 1 3578999999655322
Q ss_pred hhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCC
Q 048752 147 KDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALN 198 (205)
Q Consensus 147 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~ 198 (205)
+.+ .+++|+.|++++|+ ++.+|. + ..+++|++|++++|+ ++.
T Consensus 269 p~~---~~~~L~~L~Ls~N~---l~~~p~-~--~~l~~L~~L~L~~N~-l~~ 310 (312)
T 1wwl_A 269 PKG---LPAKLSVLDLSYNR---LDRNPS-P--DELPQVGNLSLKGNP-FLD 310 (312)
T ss_dssp CSS---CCSEEEEEECCSSC---CCSCCC-T--TTSCEEEEEECTTCT-TTC
T ss_pred hhh---ccCCceEEECCCCC---CCCChh-H--hhCCCCCEEeccCCC-CCC
Confidence 222 23799999999996 677766 5 589999999999998 554
No 50
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=3.8e-17 Score=144.31 Aligned_cols=145 Identities=12% Similarity=0.115 Sum_probs=70.3
Q ss_pred ccceeEeecCCCccccch--hhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHh
Q 048752 8 KKLEILCLRGSDIKQLPI--EVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEE 85 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~ 85 (205)
++|++|++++|.++.+|. .++.+++|++|++++ +.+..+| . +..+++|++|++++|.+..+|. .
T Consensus 548 ~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~-N~l~~lp-~-~~~L~~L~~L~Ls~N~l~~lp~-----------~ 613 (876)
T 4ecn_A 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH-NKVRHLE-A-FGTNVKLTDLKLDYNQIEEIPE-----------D 613 (876)
T ss_dssp TTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTT-SCCCBCC-C-CCTTSEESEEECCSSCCSCCCT-----------T
T ss_pred CCccEEEeeCCcCCccCChhhhhcCCCCCEEECCC-CCcccch-h-hcCCCcceEEECcCCccccchH-----------H
Confidence 344455555444444444 444555555555554 2333444 2 4445555555555555444433 5
Q ss_pred hcCCCC-ccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-CC---------CCCCcceEEecCcc--cchhhHH
Q 048752 86 LKHLPN-LTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-TN---------IWRSEFRLRLNNKI--CLKDWLI 151 (205)
Q Consensus 86 l~~l~~-L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~~---------~~~~L~~L~l~~~~--~~~~~~~ 151 (205)
+..+++ |+.|++++|.++.+|..+.......|+.+ +.++.+.+ +. ...+|+.|+++.+. ..+.++.
T Consensus 614 l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~ 693 (876)
T 4ecn_A 614 FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693 (876)
T ss_dssp SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH
T ss_pred HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHH
Confidence 677777 88888888877766654311112224444 44443332 11 12256666663332 2233332
Q ss_pred HhcCCccEEEeccCc
Q 048752 152 VQLQGIEDLELRKLQ 166 (205)
Q Consensus 152 ~~~~~L~~L~l~~~~ 166 (205)
..+++|+.|++++|.
T Consensus 694 ~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 694 ATGSPISTIILSNNL 708 (876)
T ss_dssp HTTCCCSEEECCSCC
T ss_pred ccCCCCCEEECCCCc
Confidence 234555555555553
No 51
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=1.7e-16 Score=131.58 Aligned_cols=89 Identities=22% Similarity=0.364 Sum_probs=71.0
Q ss_pred CcccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 2 SVIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 2 ~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
+.+..+++|++|++++|.++.+|. ++.+++|++|++++ +.+..+++ +..+++|++|++++|.+..+++
T Consensus 62 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~-n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-------- 129 (466)
T 1o6v_A 62 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNN-NQIADITP--LANLTNLTGLTLFNNQITDIDP-------- 129 (466)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--------
T ss_pred cchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCC-CccccChh--hcCCCCCCEEECCCCCCCCChH--------
Confidence 446678888888888888888877 88888888888888 56677765 7888889999988888876543
Q ss_pred cHHhhcCCCCccEEEEEeeCCeecc
Q 048752 82 SLEELKHLPNLTSLELDIHDVNTLP 106 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~~~ 106 (205)
++.+++|+.|++++|.+..++
T Consensus 130 ----~~~l~~L~~L~l~~n~l~~~~ 150 (466)
T 1o6v_A 130 ----LKNLTNLNRLELSSNTISDIS 150 (466)
T ss_dssp ----GTTCTTCSEEEEEEEEECCCG
T ss_pred ----HcCCCCCCEEECCCCccCCCh
Confidence 677888888888888777665
No 52
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=7.4e-17 Score=132.95 Aligned_cols=108 Identities=17% Similarity=0.249 Sum_probs=56.9
Q ss_pred ccCcccceeEeecCCCcc-ccc-hhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 4 IGDLKKLEILCLRGSDIK-QLP-IEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~-~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
|+++++|++|++++|.+. .++ ..+..+++|++|++++ +.+..++++.+..+++|++|++++|.+....+
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------- 120 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY-NQFLQLETGAFNGLANLEVLTLTQCNLDGAVL-------- 120 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT-CTTCEECTTTTTTCTTCCEEECTTSCCBTHHH--------
T ss_pred hccCccccEEECcCCcccceECcccccccccCCEEeCCC-CccCccChhhccCcccCCEEeCCCCCCCcccc--------
Confidence 445555566666555553 332 3355566666666665 33444432225556666666666655553221
Q ss_pred cHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe
Q 048752 82 SLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR 120 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~ 120 (205)
....++.+++|++|++++|.++.+.+...+.+++.|+..
T Consensus 121 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 159 (455)
T 3v47_A 121 SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159 (455)
T ss_dssp HSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE
T ss_pred CcccccCcccCCEEECCCCccCccCcccccCCCCcccEE
Confidence 001266777777777777777665433123445555444
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.70 E-value=1.4e-16 Score=134.14 Aligned_cols=153 Identities=22% Similarity=0.229 Sum_probs=114.0
Q ss_pred cccCcccceeEeecCCCccccc-hhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQLP-IEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
.|+++++|++|++++|+++.++ ..++.+++|++|++++ +.+..++++.+..+++|++|++++|.+..++.
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------- 115 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD-NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV-------- 115 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS--------
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC-CccCccCHHHhccCCCCcEEECCCCcccccch--------
Confidence 5788999999999999998887 4599999999999999 67888888779999999999999999885432
Q ss_pred cHHhhcCCCCccEEEEEeeC-CeeccCCcCcccccceEEe-eccccccC--CC---CCCCcceEEecCcc--cchhhHHH
Q 048752 82 SLEELKHLPNLTSLELDIHD-VNTLPRGLFLEKLGKYRIR-IGDWYWES--TN---IWRSEFRLRLNNKI--CLKDWLIV 152 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~~~-~~~~~~~~--~~---~~~~L~~L~l~~~~--~~~~~~~~ 152 (205)
+..++.+++|++|++++|. +..++.. .+.+++.|+.. +.++.+.+ |. .+++|++|+++.+. ..+.++..
T Consensus 116 -~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 193 (549)
T 2z81_A 116 -TSLFPNLTNLQTLRIGNVETFSEIRRI-DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193 (549)
T ss_dssp -SCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHH
T ss_pred -hhhhhccCCccEEECCCCccccccCHh-hhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHh
Confidence 1267888899999999887 6666654 55777777766 55554443 22 45667777774332 22333333
Q ss_pred hcCCccEEEeccCc
Q 048752 153 QLQGIEDLELRKLQ 166 (205)
Q Consensus 153 ~~~~L~~L~l~~~~ 166 (205)
.+++|+.|++++|.
T Consensus 194 ~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 194 ILSSVRYLELRDTN 207 (549)
T ss_dssp STTTBSEEEEESCB
T ss_pred hcccccEEEccCCc
Confidence 46777777777765
No 54
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=4.5e-17 Score=124.56 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=120.1
Q ss_pred cccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcCCCCccEEEEEeeCCeeccCCcC
Q 048752 31 TWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDVNTLPRGLF 110 (205)
Q Consensus 31 ~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 110 (205)
...+++++++ +.++.+|.+ +. +++++|++++|.+..+++ ..++.+++|++|++++|.++.+++. .
T Consensus 14 ~~~~~l~~~~-~~l~~~p~~-~~--~~l~~L~L~~n~l~~~~~----------~~~~~l~~L~~L~L~~n~l~~~~~~-~ 78 (251)
T 3m19_A 14 EGKKEVDCQG-KSLDSVPSG-IP--ADTEKLDLQSTGLATLSD----------ATFRGLTKLTWLNLDYNQLQTLSAG-V 78 (251)
T ss_dssp GGGTEEECTT-CCCSSCCSC-CC--TTCCEEECTTSCCCCCCT----------TTTTTCTTCCEEECTTSCCCCCCTT-T
T ss_pred CCCeEEecCC-CCccccCCC-CC--CCCCEEEccCCCcCccCH----------hHhcCcccCCEEECCCCcCCccCHh-H
Confidence 5678899999 789999986 33 689999999999998877 6789999999999999999998876 6
Q ss_pred cccccceEEe-eccccccC-C----CCCCCcceEEecCccc--chh-hHHHhcCCccEEEeccCchhhHHhHHHHhhhcC
Q 048752 111 LEKLGKYRIR-IGDWYWES-T----NIWRSEFRLRLNNKIC--LKD-WLIVQLQGIEDLELRKLQEQDVIYFANELVKVG 181 (205)
Q Consensus 111 ~~~L~~L~~~-~~~~~~~~-~----~~~~~L~~L~l~~~~~--~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~ 181 (205)
+..++.|+.+ +.++.+.. + ..+++|++|+++.+.. .+. .+. .+++|+.|++++|. ++.+|.... .+
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~---l~~~~~~~~-~~ 153 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD-RLTKLKELRLNTNQ---LQSIPAGAF-DK 153 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSC---CCCCCTTTT-TT
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhc-cCCcccEEECcCCc---CCccCHHHc-Cc
Confidence 6778888777 67666655 2 2678999999965532 222 234 58999999999996 677766422 68
Q ss_pred CCCccEEeecCCCCCCCCCCC
Q 048752 182 SSQLKFLRIHGCSDALNPPAE 202 (205)
Q Consensus 182 ~~~L~~L~l~~~~~l~~lp~~ 202 (205)
+++|++|++++|. ++.+|++
T Consensus 154 l~~L~~L~L~~N~-l~~~~~~ 173 (251)
T 3m19_A 154 LTNLQTLSLSTNQ-LQSVPHG 173 (251)
T ss_dssp CTTCCEEECCSSC-CSCCCTT
T ss_pred CcCCCEEECCCCc-CCccCHH
Confidence 9999999999998 7787764
No 55
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=3.1e-17 Score=131.36 Aligned_cols=179 Identities=18% Similarity=0.187 Sum_probs=126.1
Q ss_pred ccceeEeecCCCccccchh-hccccccceEeccCCCCCcccChHHhhcccccce-eecCCCccchhhhhhhccccccHHh
Q 048752 8 KKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEE-LCISRRSFQKWEVEVEGAKNASLEE 85 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~-L~l~~~~~~~~~~~i~~~~~~~~~~ 85 (205)
+++++|+|++|+|+.+|.. +.++++|++|++++|...+.+|.++|..++++++ +.+.+|+++.+++ +.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~----------~~ 99 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP----------EA 99 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT----------TS
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc----------hh
Confidence 5789999999999999875 8999999999999965567788877888888775 5566788888877 67
Q ss_pred hcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-ecc-ccccC-CC-----CCCCcceEEecCccc--chhhHHHhcC
Q 048752 86 LKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGD-WYWES-TN-----IWRSEFRLRLNNKIC--LKDWLIVQLQ 155 (205)
Q Consensus 86 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~-~~~~~-~~-----~~~~L~~L~l~~~~~--~~~~~~~~~~ 155 (205)
+..+++|+.|++++|.+..++.. .+.....+... +.. ..+.. +. ....++.|+++.+.. .+..+. ..+
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~ 177 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDV-HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGT 177 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCC-TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTE
T ss_pred hhhccccccccccccccccCCch-hhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-ccc
Confidence 89999999999999999988766 33333333332 322 23322 21 123567777754422 222222 246
Q ss_pred CccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCCC
Q 048752 156 GIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPAE 202 (205)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~ 202 (205)
+++.+++.++. .++.+|...+ .++++|++|++++|. ++++|.+
T Consensus 178 ~L~~l~l~~~n--~l~~i~~~~f-~~l~~L~~LdLs~N~-l~~lp~~ 220 (350)
T 4ay9_X 178 QLDELNLSDNN--NLEELPNDVF-HGASGPVILDISRTR-IHSLPSY 220 (350)
T ss_dssp EEEEEECTTCT--TCCCCCTTTT-TTEECCSEEECTTSC-CCCCCSS
T ss_pred chhHHhhccCC--cccCCCHHHh-ccCcccchhhcCCCC-cCccChh
Confidence 78888887666 6777776553 577888888888886 7777764
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.1e-17 Score=139.51 Aligned_cols=185 Identities=13% Similarity=0.107 Sum_probs=114.6
Q ss_pred CcccceeEeecCCCccccc-hhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhh-------hhc
Q 048752 6 DLKKLEILCLRGSDIKQLP-IEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVE-------VEG 77 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~-------i~~ 77 (205)
.+++|++|++++|.++.++ ..++.+++|++|++++ +.+...++ +..+++|++|++++|.+..+++. +.+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~ 108 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS-NVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAAN 108 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTT-SCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCS
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeC-CCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcC
Confidence 4558999999999998776 4689999999999998 56666655 78889999999998888766541 001
Q ss_pred cccccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC--CC----CCCCcceEEecCcccc-hhh
Q 048752 78 AKNASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES--TN----IWRSEFRLRLNNKICL-KDW 149 (205)
Q Consensus 78 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~--~~----~~~~L~~L~l~~~~~~-~~~ 149 (205)
+..... ....+++|+.|++++|.++.+++. .+..++.|+.+ +.++.+.+ |. .+++|++|+++.+... ...
T Consensus 109 N~l~~~-~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 109 NNISRV-SCSRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (487)
T ss_dssp SCCCCE-EECCCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CcCCCC-CccccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence 000000 012356667777777766665544 44556666655 55544433 21 3466677777443221 111
Q ss_pred HHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCCC
Q 048752 150 LIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPAE 202 (205)
Q Consensus 150 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~ 202 (205)
.. .+++|+.|++++|. ++.+|..+ ..+++|+.|++++|. ++.+|..
T Consensus 187 ~~-~l~~L~~L~Ls~N~---l~~~~~~~--~~l~~L~~L~Ls~N~-l~~lp~~ 232 (487)
T 3oja_A 187 QV-VFAKLKTLDLSSNK---LAFMGPEF--QSAAGVTWISLRNNK-LVLIEKA 232 (487)
T ss_dssp CC-CCTTCCEEECCSSC---CCEECGGG--GGGTTCSEEECTTSC-CCEECTT
T ss_pred cc-cCCCCCEEECCCCC---CCCCCHhH--cCCCCccEEEecCCc-Ccccchh
Confidence 11 35677777777665 45555555 466777777777766 5555554
No 57
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.7e-17 Score=146.54 Aligned_cols=158 Identities=17% Similarity=0.216 Sum_probs=97.7
Q ss_pred cccCcccceeEeecCCCccc------------------cchhhc--cccccceEeccCCCCCcccChHHhhcccccceee
Q 048752 3 VIGDLKKLEILCLRGSDIKQ------------------LPIEVG--QLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELC 62 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~------------------lp~~i~--~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~ 62 (205)
.|+++++|++|++++|.++. +|..++ ++++|++|++++|+....+|.. +.++++|++|+
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~ 521 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLN 521 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEE
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEE
Confidence 47789999999999999987 999887 9999999999997778889976 99999999999
Q ss_pred cCCCc-cch--hhhhhhccccccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-C--CCCCCc
Q 048752 63 ISRRS-FQK--WEVEVEGAKNASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-T--NIWRSE 135 (205)
Q Consensus 63 l~~~~-~~~--~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~--~~~~~L 135 (205)
+++|+ ++. +|..+..-. ..+..+++|+.|++++|.++.+|..-.+.+++.|+.+ +.++.+.. | ..+++|
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~----~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L 597 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLA----DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKL 597 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHH----HCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEE
T ss_pred CcCCCCcccccchHHHHhhh----hcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcc
Confidence 99998 764 555222100 0223344666666666666655540012334444433 33333222 2 134455
Q ss_pred ceEEecCcc--cchhhHHHhcCC-ccEEEeccCc
Q 048752 136 FRLRLNNKI--CLKDWLIVQLQG-IEDLELRKLQ 166 (205)
Q Consensus 136 ~~L~l~~~~--~~~~~~~~~~~~-L~~L~l~~~~ 166 (205)
+.|+++.+. ..+.++. .+++ |+.|++++|.
T Consensus 598 ~~L~Ls~N~l~~lp~~l~-~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 598 TDLKLDYNQIEEIPEDFC-AFTDQVEGLGFSHNK 630 (876)
T ss_dssp SEEECCSSCCSCCCTTSC-EECTTCCEEECCSSC
T ss_pred eEEECcCCccccchHHHh-hccccCCEEECcCCC
Confidence 555553322 1222233 3444 5555555554
No 58
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.70 E-value=5e-17 Score=138.53 Aligned_cols=188 Identities=18% Similarity=0.164 Sum_probs=113.9
Q ss_pred ccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccc-hhhhh-h------
Q 048752 4 IGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQ-KWEVE-V------ 75 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~-~~~~~-i------ 75 (205)
++++++|++|++++|.++.+|..+..+++|++|++++ +.+..+++..+..+++|++|++++|.+. .++.. +
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSA-NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTT-CCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECcc-CCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 5667788888888888888887777888888888887 4555554433677777777777777654 23321 0
Q ss_pred -----hcccc----ccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC------CCCCCCcceEE
Q 048752 76 -----EGAKN----ASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES------TNIWRSEFRLR 139 (205)
Q Consensus 76 -----~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~------~~~~~~L~~L~ 139 (205)
.+... .....++.+++|++|++++|.+...++. .+..++.|+.. +.++.+.. -..+++|++|+
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT-TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH-HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 00000 0123456666777777777766665444 44555555554 44433322 12456777777
Q ss_pred ecCccc---chhhHHHhcCCccEEEeccCchhhHHh--HH--HHhhhcCCCCccEEeecCCCCCCCCC
Q 048752 140 LNNKIC---LKDWLIVQLQGIEDLELRKLQEQDVIY--FA--NELVKVGSSQLKFLRIHGCSDALNPP 200 (205)
Q Consensus 140 l~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~--~~l~~~~~~~L~~L~l~~~~~l~~lp 200 (205)
++.+.. .+.++. .+++|+.|++++|. +.. ++ ..+ ..+++|++|++++|. ++.++
T Consensus 432 l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~---l~~~~~~~~~~~--~~l~~L~~L~Ls~n~-l~~~~ 492 (606)
T 3t6q_A 432 LSHSLLDISSEQLFD-GLPALQHLNLQGNH---FPKGNIQKTNSL--QTLGRLEILVLSFCD-LSSID 492 (606)
T ss_dssp CTTCCCBTTCTTTTT-TCTTCCEEECTTCB---CGGGEECSSCGG--GGCTTCCEEECTTSC-CCEEC
T ss_pred CCCCccCCcCHHHHh-CCCCCCEEECCCCC---CCccccccchhh--ccCCCccEEECCCCc-cCccC
Confidence 754422 223344 57888888888886 332 22 234 578888888888887 55543
No 59
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.70 E-value=9.2e-17 Score=132.37 Aligned_cols=68 Identities=22% Similarity=0.342 Sum_probs=40.7
Q ss_pred cccCcccceeEeecCCCccc-cchh--hccccccceEeccCCCCCccc-ChHHhhcccccceeecCCCccchh
Q 048752 3 VIGDLKKLEILCLRGSDIKQ-LPIE--VGQLTWLTLLDLRECRKLEVI-PPNVLSNLSHLEELCISRRSFQKW 71 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~L~l~~c~~l~~l-p~~~~~~l~~L~~L~l~~~~~~~~ 71 (205)
.|+++++|++|++++|+++. +|.. ++.+++|++|++++| .+..+ |...+..+++|++|++++|.+...
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCccccc
Confidence 45566777777777776653 3333 666677777777763 34443 433356666666666666665543
No 60
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=2e-17 Score=122.14 Aligned_cols=152 Identities=15% Similarity=0.107 Sum_probs=106.2
Q ss_pred cCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHH
Q 048752 5 GDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLE 84 (205)
Q Consensus 5 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~ 84 (205)
+.+++|++|++++|.++.+| .+..+++|++|++++| .+..++ . +..+++|++|++++|.+....+ .
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~-l~~l~~L~~L~l~~n~l~~~~~----------~ 106 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-P-ISGLSNLERLRIMGKDVTSDKI----------P 106 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-G-GTTCTTCCEEEEECTTCBGGGS----------C
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-h-hhcCCCCCEEEeECCccCcccC----------h
Confidence 35677888888888888877 5888888888888885 566555 3 7788888888888888876433 4
Q ss_pred hhcCCCCccEEEEEeeCCeeccCCcCcccccceEEeeccccccCCCCCCCcceEEecCcc--cchhhHHHhcCCccEEEe
Q 048752 85 ELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIRIGDWYWESTNIWRSEFRLRLNNKI--CLKDWLIVQLQGIEDLEL 162 (205)
Q Consensus 85 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l 162 (205)
.++.+++|+.|++++|.++..... .+. .+++|++|+++.+. .....+. .+++|+.|++
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~-~l~------------------~l~~L~~L~L~~n~~i~~~~~l~-~l~~L~~L~l 166 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILT-KIN------------------TLPKVNSIDLSYNGAITDIMPLK-TLPELKSLNI 166 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHH-HHT------------------TCSSCCEEECCSCTBCCCCGGGG-GCSSCCEEEC
T ss_pred hhcCCCCCCEEEecCCccCcHhHH-HHh------------------hCCCCCEEEccCCCCccccHhhc-CCCCCCEEEC
Confidence 677888888888888877652222 223 34445566664332 1122344 6899999999
Q ss_pred ccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCC
Q 048752 163 RKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDAL 197 (205)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~ 197 (205)
++|. ++.++ .+ ..+++|++|++++|+ +.
T Consensus 167 ~~n~---i~~~~-~l--~~l~~L~~L~l~~N~-i~ 194 (197)
T 4ezg_A 167 QFDG---VHDYR-GI--EDFPKLNQLYAFSQT-IG 194 (197)
T ss_dssp TTBC---CCCCT-TG--GGCSSCCEEEECBC----
T ss_pred CCCC---CcChH-Hh--ccCCCCCEEEeeCcc-cC
Confidence 9996 66666 55 589999999999998 54
No 61
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=4.1e-17 Score=122.57 Aligned_cols=103 Identities=21% Similarity=0.377 Sum_probs=76.6
Q ss_pred eeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcCCC
Q 048752 11 EILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLP 90 (205)
Q Consensus 11 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~ 90 (205)
+.++.++++++.+|..+. +++++|++++ +.++.++++.+..+++|++|++++|++..+.+ ..+.+++
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~-n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~----------~~~~~l~ 80 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQ-NTIKVIPPGAFSPYKKLRRIDLSNNQISELAP----------DAFQGLR 80 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCS-SCCCEECTTSSTTCTTCCEEECCSSCCCEECT----------TTTTTCS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCC-CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH----------HHhhCCc
Confidence 567788888888887654 6888888888 67777777557888888888888888887755 5778888
Q ss_pred CccEEEEEeeCCeeccCCcCcccccceEEe-ecccccc
Q 048752 91 NLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWE 127 (205)
Q Consensus 91 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~ 127 (205)
+|+.|++++|.++.++.. .+..+..|+.+ +.++.+.
T Consensus 81 ~L~~L~Ls~N~l~~l~~~-~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 81 SLNSLVLYGNKITELPKS-LFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp SCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCC
T ss_pred CCCEEECCCCcCCccCHh-HccCCCCCCEEECCCCCCC
Confidence 888888888888887766 45555555555 4444443
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.69 E-value=3.3e-17 Score=139.69 Aligned_cols=170 Identities=16% Similarity=0.102 Sum_probs=119.8
Q ss_pred ccceeEeecCCCccccch-hhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh
Q 048752 8 KKLEILCLRGSDIKQLPI-EVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL 86 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l 86 (205)
.++++|||++|+|+.+|+ .|.++++|++|+|++ +.++.+|+++|..+++|++|++++|+++.+++ ..+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~-N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~----------~~f 120 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL----------GAF 120 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEECG----------GGG
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCC-CcCCCcChhHhcCCCCCCEEEccCCcCCCCCH----------HHh
Confidence 368999999999999986 489999999999999 67888988778999999999999999998887 678
Q ss_pred cCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC---CC---CCCCcceEEecCccc---chhhHHH---h
Q 048752 87 KHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES---TN---IWRSEFRLRLNNKIC---LKDWLIV---Q 153 (205)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~---~~---~~~~L~~L~l~~~~~---~~~~~~~---~ 153 (205)
+++++|++|++++|.++.+++. .+.++++|+.+ +.++.+.. |. .++.|++|+++.+.. .+..+.. .
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~-~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred cCCCCCCEEECCCCcCCCCChh-hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence 9999999999999999988876 66777777766 55554432 22 456677777744321 1222221 1
Q ss_pred cCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCC
Q 048752 154 LQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 154 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 194 (205)
......++++.+. ++.++... .....++.+++.+|.
T Consensus 200 ~~~~~~~~ls~n~---l~~i~~~~--~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 200 PLLNLSLDLSLNP---MNFIQPGA--FKEIRLHKLTLRNNF 235 (635)
T ss_dssp TTCCCEEECTTCC---CCEECTTT--TTTCEEEEEEEESCC
T ss_pred hhhhhhhhcccCc---ccccCccc--ccchhhhhhhhhccc
Confidence 1223355666554 44444443 234456666666653
No 63
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.68 E-value=1.5e-16 Score=135.51 Aligned_cols=177 Identities=14% Similarity=0.089 Sum_probs=76.5
Q ss_pred CcccceeEeecCCCcccc---chhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhcccccc
Q 048752 6 DLKKLEILCLRGSDIKQL---PIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNAS 82 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~ 82 (205)
++++|++|++++|.++.+ |..+..+++|++|++++ +.+..+++..+..+++|++|++++|.+....+
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------- 417 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY-NEPLSLKTEAFKECPQLELLDLAFTRLKVKDA--------- 417 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCS-CSCEEECTTTTTTCTTCSEEECTTCCEECCTT---------
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCC-CcCCcCCHHHhcCCccCCeEECCCCcCCCccc---------
Confidence 344444444444444332 22344444444444444 22333322224444444444444444433221
Q ss_pred HHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC--------CCCCCCcceEEecCccc---chhhH
Q 048752 83 LEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES--------TNIWRSEFRLRLNNKIC---LKDWL 150 (205)
Q Consensus 83 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~--------~~~~~~L~~L~l~~~~~---~~~~~ 150 (205)
...+..+++|++|++++|.+...++. .+..++.|+.. +.++.+.+ ...+++|++|+++.+.. .+.++
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 496 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSEQ-LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCTT-TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred chhhhCcccCCEEECCCCccCCcCHH-HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence 01244555555555555555544333 33444444443 33332211 11345556666533321 12233
Q ss_pred HHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCC
Q 048752 151 IVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPP 200 (205)
Q Consensus 151 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp 200 (205)
. .+++|+.|++++|. .....|..+ ..+++| .|++++|. ++.+|
T Consensus 497 ~-~l~~L~~L~Ls~N~--l~~~~~~~l--~~l~~L-~L~L~~N~-l~~~~ 539 (606)
T 3t6q_A 497 T-SLKMMNHVDLSHNR--LTSSSIEAL--SHLKGI-YLNLASNH-ISIIL 539 (606)
T ss_dssp T-TCTTCCEEECCSSC--CCGGGGGGG--TTCCSC-EEECCSSC-CCCCC
T ss_pred c-cccCCCEEECCCCc--cCcCChhHh--Cccccc-EEECcCCc-ccccC
Confidence 3 45666666666665 222234444 355666 66666665 44444
No 64
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.68 E-value=4.1e-17 Score=139.04 Aligned_cols=175 Identities=15% Similarity=0.045 Sum_probs=139.9
Q ss_pred ccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccCh-HHhhcccccceeecCCCccchhhhhhhcccccc
Q 048752 4 IGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPP-NVLSNLSHLEELCISRRSFQKWEVEVEGAKNAS 82 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~ 82 (205)
++.+++|++|++++|.++.+|..+..+++|++|++++| .+...++ ..+..+++|++|++++|.+....+
T Consensus 372 ~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------- 441 (606)
T 3vq2_A 372 DLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD--------- 441 (606)
T ss_dssp HHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSCCEECCT---------
T ss_pred hccCCcccEeECCCCccccchhhccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCCCCccch---------
Confidence 45789999999999999999988999999999999994 5555543 448899999999999999987665
Q ss_pred HHhhcCCCCccEEEEEeeCCee-ccCCcCcccccceEEe-eccccccC--C---CCCCCcceEEecCccc---chhhHHH
Q 048752 83 LEELKHLPNLTSLELDIHDVNT-LPRGLFLEKLGKYRIR-IGDWYWES--T---NIWRSEFRLRLNNKIC---LKDWLIV 152 (205)
Q Consensus 83 ~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~~~-~~~~~~~~--~---~~~~~L~~L~l~~~~~---~~~~~~~ 152 (205)
..++.+++|++|++++|.+.. ..+. .+..++.|+.. +.++.+.. + ..+++|++|+++.+.. .+.++.
T Consensus 442 -~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~- 518 (606)
T 3vq2_A 442 -GIFLGLTSLNTLKMAGNSFKDNTLSN-VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN- 518 (606)
T ss_dssp -TTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT-
T ss_pred -hhhcCCCCCCEEECCCCcCCCcchHH-hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc-
Confidence 578999999999999998876 2333 45677777776 66655544 2 2678999999965532 244555
Q ss_pred hcCCccEEEeccCchhhHHhHHHHhhhcCCC-CccEEeecCCCCC
Q 048752 153 QLQGIEDLELRKLQEQDVIYFANELVKVGSS-QLKFLRIHGCSDA 196 (205)
Q Consensus 153 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~-~L~~L~l~~~~~l 196 (205)
.+++|+.|++++|. ++.+|..+ ..++ +|+++++++|+..
T Consensus 519 ~l~~L~~L~l~~N~---l~~~p~~~--~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 519 QLYSLSTLDCSFNR---IETSKGIL--QHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp TCTTCCEEECTTSC---CCCEESCG--GGSCTTCCEEECCSCCCC
T ss_pred CCCcCCEEECCCCc---CcccCHhH--hhhcccCcEEEccCCCcc
Confidence 68999999999997 67888886 5776 6999999999843
No 65
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.68 E-value=4.1e-17 Score=121.24 Aligned_cols=101 Identities=29% Similarity=0.413 Sum_probs=63.5
Q ss_pred ccceeEeecCCCccccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh
Q 048752 8 KKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL 86 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l 86 (205)
++|++|++++|+++.+|.. +..+++|++|++++ +.++.+|.+.+..+++|++|++++|.+..+++ ..+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------~~~ 96 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN----------GVF 96 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------TTT
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCC-CccCccChhhcCCCCCcCEEECCCCcCCccCH----------hHh
Confidence 4566777777766666654 56667777777776 45666665545666777777777676666555 345
Q ss_pred cCCCCccEEEEEeeCCeeccCCcCcccccceEEe
Q 048752 87 KHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR 120 (205)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~ 120 (205)
+.+++|+.|++++|.++.++.. .+.++..|+.+
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L 129 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPDG-VFDKLTQLKDL 129 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEE
T ss_pred cCccCCCEEEcCCCcCcccCHh-HhccCCcCCEE
Confidence 6666777777777766666554 34444444444
No 66
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.67 E-value=1.2e-15 Score=127.88 Aligned_cols=69 Identities=17% Similarity=0.090 Sum_probs=43.6
Q ss_pred CCCCCcceEEecCccc---chhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCC-CCCC
Q 048752 130 NIWRSEFRLRLNNKIC---LKDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALN-PPAE 202 (205)
Q Consensus 130 ~~~~~L~~L~l~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~-lp~~ 202 (205)
..+++|++|+++.+.. .+.++. .+++|+.|++++|....+..+|..+ ..+++|++|++++|. +.. +|.+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~--~~l~~L~~L~Ls~N~-l~~~l~~~ 393 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMT--TQMKSLQQLDISQNS-VSYDEKKG 393 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHH--TTCTTCCEEECCSSC-CBCCGGGC
T ss_pred hhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHH--hhCCCCCEEECCCCc-CCcccccc
Confidence 4566777777754432 233444 5778888888887632333555556 578888888888877 554 5543
No 67
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=1.8e-16 Score=119.72 Aligned_cols=97 Identities=21% Similarity=0.337 Sum_probs=63.2
Q ss_pred ceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcCC
Q 048752 10 LEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHL 89 (205)
Q Consensus 10 L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l 89 (205)
-+.++.++++++.+|..+. ++|++|++++ +.+..++++.+..+++|++|++++|.+..+++ ..+..+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~----------~~~~~l 87 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHD-NQITKLEPGVFDSLINLKELYLGSNQLGALPV----------GVFDSL 87 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------TTTTTC
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCC-CccCccCHHHhhCccCCcEEECCCCCCCCcCh----------hhcccC
Confidence 4456677777777776544 6777777777 45666544446777777777777777776665 455677
Q ss_pred CCccEEEEEeeCCeeccCCcCcccccceEEe
Q 048752 90 PNLTSLELDIHDVNTLPRGLFLEKLGKYRIR 120 (205)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~ 120 (205)
++|+.|++++|.++.++.. .+..+..|+.+
T Consensus 88 ~~L~~L~Ls~N~l~~l~~~-~~~~l~~L~~L 117 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVLPSA-VFDRLVHLKEL 117 (229)
T ss_dssp TTCCEEECCSSCCCCCCTT-TTTTCTTCCEE
T ss_pred CCcCEEECCCCcCCccChh-HhCcchhhCeE
Confidence 7777777777777766654 34444444444
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.66 E-value=9.3e-17 Score=126.84 Aligned_cols=174 Identities=13% Similarity=0.140 Sum_probs=123.9
Q ss_pred cccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChH----------------HhhcccccceeecCCC
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPN----------------VLSNLSHLEELCISRR 66 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~----------------~~~~l~~L~~L~l~~~ 66 (205)
.++++++|++|++++|.++..++ +..+++|++|++++| .++.++.. ....+++|++|++++|
T Consensus 53 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N 130 (317)
T 3o53_A 53 DLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130 (317)
T ss_dssp HHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSS
T ss_pred HhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-ccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCC
Confidence 35678888888888888877665 788888888888874 44444321 0122455666666666
Q ss_pred ccchhhhhhhccccccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC---CCCCCCcceEEecC
Q 048752 67 SFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES---TNIWRSEFRLRLNN 142 (205)
Q Consensus 67 ~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~---~~~~~~L~~L~l~~ 142 (205)
++..+++ ..++.+++|+.|++++|.++.++.......++.|+.. +.++.+.. ...+++|++|+++.
T Consensus 131 ~l~~~~~----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 131 KITMLRD----------LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS 200 (317)
T ss_dssp CCCSGGG----------BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS
T ss_pred CCCCccc----------hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCC
Confidence 6666555 4677889999999999999886554222356666666 56655544 22588999999965
Q ss_pred ccc--chhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCC
Q 048752 143 KIC--LKDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 143 ~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 194 (205)
+.. .+..+. .+++|+.|++++|. ++.+|..+ ..+++|+.|++++|+
T Consensus 201 N~l~~l~~~~~-~l~~L~~L~L~~N~---l~~l~~~~--~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 201 NKLAFMGPEFQ-SAAGVTWISLRNNK---LVLIEKAL--RFSQNLEHFDLRGNG 248 (317)
T ss_dssp SCCCEECGGGG-GGTTCSEEECTTSC---CCEECTTC--CCCTTCCEEECTTCC
T ss_pred CcCCcchhhhc-ccCcccEEECcCCc---ccchhhHh--hcCCCCCEEEccCCC
Confidence 532 334455 68999999999996 67788777 588999999999998
No 69
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.66 E-value=4.5e-16 Score=129.01 Aligned_cols=62 Identities=19% Similarity=0.115 Sum_probs=30.7
Q ss_pred CCCCcceEEecCcc-cchhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCC
Q 048752 131 IWRSEFRLRLNNKI-CLKDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPP 200 (205)
Q Consensus 131 ~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp 200 (205)
.+++|++|+++.+. .....+. .+++|+.|++++|. +..++. + ..+++|+.|++++|+ ++.+|
T Consensus 329 ~l~~L~~L~l~~n~l~~~~~l~-~l~~L~~L~l~~n~---l~~~~~-~--~~l~~L~~L~l~~n~-~~~~p 391 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSDVSSLA-NLTNINWLSAGHNQ---ISDLTP-L--ANLTRITQLGLNDQA-WTNAP 391 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGGGT-TCTTCCEEECCSSC---CCBCGG-G--TTCTTCCEEECCCEE-EECCC
T ss_pred cCccCCEeECCCCccCCchhhc-cCCCCCEEeCCCCc---cCccch-h--hcCCCCCEEeccCCc-ccCCc
Confidence 44455555553331 1112233 45666666666664 333332 3 356666666666665 44444
No 70
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.66 E-value=7e-16 Score=129.24 Aligned_cols=150 Identities=13% Similarity=0.147 Sum_probs=110.8
Q ss_pred ccccccceEeccCCCCCcc-cChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcCCCCccEEEEEeeCCee-c
Q 048752 28 GQLTWLTLLDLRECRKLEV-IPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDVNT-L 105 (205)
Q Consensus 28 ~~l~~L~~L~l~~c~~l~~-lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~ 105 (205)
..+++|++|++++| .+.. +|.. +..+++|++|++++|++..++. .+..++.+++|++|++++|.+.. +
T Consensus 321 ~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~--------~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 321 SKISPFLHLDFSNN-LLTDTVFEN-CGHLTELETLILQMNQLKELSK--------IAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTT-CCCCSSCCEEECCSSCCCBHHH--------HHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred hhCCcccEEEeECC-ccChhhhhh-hccCCCCCEEEccCCccCcccc--------chHHHhhCCCCCEEECCCCcCCccc
Confidence 57788888899884 4554 6665 7888899999998888886443 12468889999999999999887 7
Q ss_pred cCCcCcccccceEEe-eccccccC--CCCC-CCcceEEecCcc--cchhhHHHhcCCccEEEeccCchhhHHhHHHH-hh
Q 048752 106 PRGLFLEKLGKYRIR-IGDWYWES--TNIW-RSEFRLRLNNKI--CLKDWLIVQLQGIEDLELRKLQEQDVIYFANE-LV 178 (205)
Q Consensus 106 ~~~~~~~~L~~L~~~-~~~~~~~~--~~~~-~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~ 178 (205)
|.. .+..++.|+.. +.++.+.+ +..+ ++|++|+++.+. ..+.++. .+++|+.|++++|. ++.+|.. +
T Consensus 391 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~---l~~l~~~~~- 464 (520)
T 2z7x_B 391 KKG-DCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQ---LKSVPDGIF- 464 (520)
T ss_dssp GGC-SCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSC---CCCCCTTTT-
T ss_pred ccc-hhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhh-cCCCCCEEECCCCc---CCccCHHHh-
Confidence 765 45666666666 66655543 3344 689999995543 3345555 68899999999886 6778776 4
Q ss_pred hcCCCCccEEeecCCC
Q 048752 179 KVGSSQLKFLRIHGCS 194 (205)
Q Consensus 179 ~~~~~~L~~L~l~~~~ 194 (205)
..+++|++|++++|+
T Consensus 465 -~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 465 -DRLTSLQKIWLHTNP 479 (520)
T ss_dssp -TTCTTCCEEECCSSC
T ss_pred -ccCCcccEEECcCCC
Confidence 578999999999988
No 71
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=1.2e-16 Score=136.39 Aligned_cols=170 Identities=25% Similarity=0.290 Sum_probs=131.8
Q ss_pred cCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHH
Q 048752 5 GDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLE 84 (205)
Q Consensus 5 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~ 84 (205)
..+.+|+.|++++|.+..+|. +..+++|+.|+|++ +.+..+++ +..+++|++|++++|.+..++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~------------ 103 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNG-NKLTDIKP--LTNLKNLGWLFLDENKIKDLS------------ 103 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTT-SCCCCCGG--GGGCTTCCEEECCSSCCCCCT------------
T ss_pred hcCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeC-CCCCCChh--hccCCCCCEEECcCCCCCCCh------------
Confidence 457889999999999998874 88999999999999 57787876 889999999999999987643
Q ss_pred hhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC---CCCCCCcceEEecCcccc-hhhHHHhcCCccE
Q 048752 85 ELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES---TNIWRSEFRLRLNNKICL-KDWLIVQLQGIED 159 (205)
Q Consensus 85 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~---~~~~~~L~~L~l~~~~~~-~~~~~~~~~~L~~ 159 (205)
.+..+++|+.|++++|.+..++. +..+..|+.+ +..+.+.. ...+++|+.|+++.+... ...+. .+++|+.
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~l~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~-~l~~L~~ 179 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISDING---LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLA-GLTKLQN 179 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCCCGG---GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGT-TCTTCCE
T ss_pred hhccCCCCCEEEecCCCCCCCcc---ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhc-cCCCCCE
Confidence 57889999999999999888753 4566666666 55554444 347889999999655322 22244 6899999
Q ss_pred EEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCC
Q 048752 160 LELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPA 201 (205)
Q Consensus 160 L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~ 201 (205)
|++++|. +..++ .+ ..+++|+.|++++|+ +...|.
T Consensus 180 L~Ls~N~---i~~l~-~l--~~l~~L~~L~L~~N~-l~~~p~ 214 (605)
T 1m9s_A 180 LYLSKNH---ISDLR-AL--AGLKNLDVLELFSQE-CLNKPI 214 (605)
T ss_dssp EECCSSC---CCBCG-GG--TTCTTCSEEECCSEE-EECCCC
T ss_pred EECcCCC---CCCCh-HH--ccCCCCCEEEccCCc-CcCCcc
Confidence 9999996 56665 45 589999999999997 555443
No 72
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.65 E-value=6e-16 Score=128.14 Aligned_cols=60 Identities=23% Similarity=0.262 Sum_probs=31.0
Q ss_pred CcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccch
Q 048752 6 DLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQK 70 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~ 70 (205)
++++|++|++++|.++.+| .++.+++|++|++++ +.++.+| +..+++|++|++++|.+..
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~-n~l~~~~---~~~l~~L~~L~Ls~N~l~~ 99 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTS-NNITTLD---LSQNTNLTYLACDSNKLTN 99 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCS-SCCSCCC---CTTCTTCSEEECCSSCCSC
T ss_pred HcCCCCEEEccCCCcccCh-hhcccCCCCEEEccC-CcCCeEc---cccCCCCCEEECcCCCCce
Confidence 4555555555555555554 355555555555555 3344443 3445555555555555443
No 73
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.65 E-value=5.1e-16 Score=134.00 Aligned_cols=186 Identities=17% Similarity=0.147 Sum_probs=94.2
Q ss_pred ccceeEeecCCCccccc-hhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhc---------
Q 048752 8 KKLEILCLRGSDIKQLP-IEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEG--------- 77 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~--------- 77 (205)
.+|+.|++++|+++.++ ..+..+++|++|++++|.....+|...+..+++|++|++++|++..+++..-.
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 35666666666665543 34666666666666663222345533366666666666666665544331000
Q ss_pred -------cccccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-------------CCCCCCcc
Q 048752 78 -------AKNASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-------------TNIWRSEF 136 (205)
Q Consensus 78 -------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-------------~~~~~~L~ 136 (205)
.....+..++.+++|+.|++++|.++.+++. .+..++.|+.. +.++.+.. -..+++|+
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD-MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCChh-hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCC
Confidence 0011223556666666666666666666554 44455555444 43333221 02345566
Q ss_pred eEEecCccc--chh-hHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCC
Q 048752 137 RLRLNNKIC--LKD-WLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPP 200 (205)
Q Consensus 137 ~L~l~~~~~--~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp 200 (205)
+|+++.+.. .+. .+. .+++|+.|++++|. ++.+|.... .++++|++|++++|. ++.++
T Consensus 540 ~L~L~~N~l~~i~~~~~~-~l~~L~~L~Ls~N~---l~~l~~~~~-~~l~~L~~L~L~~N~-l~~~~ 600 (680)
T 1ziw_A 540 ILNLESNGFDEIPVEVFK-DLFELKIIDLGLNN---LNTLPASVF-NNQVSLKSLNLQKNL-ITSVE 600 (680)
T ss_dssp EEECCSSCCCCCCTTTTT-TCTTCCEEECCSSC---CCCCCTTTT-TTCTTCCEEECTTSC-CCBCC
T ss_pred EEECCCCCCCCCCHHHcc-cccCcceeECCCCC---CCcCCHhHh-CCCCCCCEEECCCCc-CCccC
Confidence 666643321 111 123 45566666666554 445544432 455566666666654 44443
No 74
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.65 E-value=3.2e-16 Score=129.80 Aligned_cols=167 Identities=17% Similarity=0.086 Sum_probs=130.6
Q ss_pred CcccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 2 SVIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 2 ~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
+.++.+++|++|++++|.++.+| ++.+++|++|++++ +.++.+| +..+++|++|++++|++..+
T Consensus 58 ~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~-N~l~~~~---~~~l~~L~~L~L~~N~l~~l---------- 121 (457)
T 3bz5_A 58 TGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDS-NKLTNLD---VTPLTKLTYLNCDTNKLTKL---------- 121 (457)
T ss_dssp TTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCS-SCCSCCC---CTTCTTCCEEECCSSCCSCC----------
T ss_pred hhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcC-CCCceee---cCCCCcCCEEECCCCcCCee----------
Confidence 45778999999999999999987 88999999999999 5677775 78999999999999998754
Q ss_pred cHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-ecccc-ccC--CCCCCCcceEEecCcccchhhHHHhcCCc
Q 048752 82 SLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWY-WES--TNIWRSEFRLRLNNKICLKDWLIVQLQGI 157 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~-~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~L 157 (205)
.++.+++|+.|++++|.++.++ +.+++.|+.. +..+. +.. ...+++|++|+++.+....-.+. .+++|
T Consensus 122 ---~~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~-~l~~L 193 (457)
T 3bz5_A 122 ---DVSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVS-QNKLL 193 (457)
T ss_dssp ---CCTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCT-TCTTC
T ss_pred ---cCCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccc-cCCCC
Confidence 2678999999999999998874 2455555555 44432 221 34788999999965532221244 68999
Q ss_pred cEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCC
Q 048752 158 EDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPP 200 (205)
Q Consensus 158 ~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp 200 (205)
+.|++++|. ++.++ + ..+++|++|++++|. ++.+|
T Consensus 194 ~~L~l~~N~---l~~~~--l--~~l~~L~~L~Ls~N~-l~~ip 228 (457)
T 3bz5_A 194 NRLNCDTNN---ITKLD--L--NQNIQLTFLDCSSNK-LTEID 228 (457)
T ss_dssp CEEECCSSC---CSCCC--C--TTCTTCSEEECCSSC-CSCCC
T ss_pred CEEECcCCc---CCeec--c--ccCCCCCEEECcCCc-ccccC
Confidence 999999997 55553 4 589999999999998 77776
No 75
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=5.7e-16 Score=115.04 Aligned_cols=142 Identities=20% Similarity=0.275 Sum_probs=102.8
Q ss_pred ceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcCC
Q 048752 10 LEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHL 89 (205)
Q Consensus 10 L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l 89 (205)
-+.++.+++.++.+|..+ .++|++|++++ +.++.++.+.+..+++|++|++++|++..+++ ..+..+
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~~~~~l 75 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLET-NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN----------GVFNKL 75 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT----------TTTTTC
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCC-CccCcCChhhhcccccCcEEECCCCccCccCh----------hhcCCC
Confidence 367888888999999765 46999999999 67888888768899999999999999998877 567899
Q ss_pred CCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-CC----CCCCcceEEecCccc--chh-hHHHhcCCccEE
Q 048752 90 PNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-TN----IWRSEFRLRLNNKIC--LKD-WLIVQLQGIEDL 160 (205)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~~----~~~~L~~L~l~~~~~--~~~-~~~~~~~~L~~L 160 (205)
++|++|++++|.++.++.. .+..++.|+.+ +.++.+.. +. .+++|++|+++.+.. .+. .+. .+++|+.|
T Consensus 76 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L 153 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQSLPNG-VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD-RLTSLQYI 153 (208)
T ss_dssp TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEE
T ss_pred CCcCEEECCCCcCCccCHh-HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhc-cCCCccEE
Confidence 9999999999999988876 55666666666 55555444 21 345556666633311 111 122 35566666
Q ss_pred EeccCc
Q 048752 161 ELRKLQ 166 (205)
Q Consensus 161 ~l~~~~ 166 (205)
++++|.
T Consensus 154 ~l~~N~ 159 (208)
T 2o6s_A 154 WLHDNP 159 (208)
T ss_dssp ECCSCC
T ss_pred EecCCC
Confidence 666554
No 76
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=2.7e-16 Score=113.01 Aligned_cols=139 Identities=20% Similarity=0.203 Sum_probs=100.9
Q ss_pred cccceeEeecCCCcc--ccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHH
Q 048752 7 LKKLEILCLRGSDIK--QLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLE 84 (205)
Q Consensus 7 l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~ 84 (205)
.++|+.|++++|.++ .+|..+..+++|++|++++ +.++.+ .. +..+++|++|++++|.+....+ .
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~-n~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~----------~ 89 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLIN-VGLISV-SN-LPKLPKLKKLELSENRIFGGLD----------M 89 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEES-SCCCCC-SS-CCCCSSCCEEEEESCCCCSCCC----------H
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcC-CCCCCh-hh-hccCCCCCEEECcCCcCchHHH----------H
Confidence 466788888888877 7777777888888888887 446666 33 7778888888888888776333 3
Q ss_pred hhcCCCCccEEEEEeeCCeeccCCcCcccccceEEeeccccccCCCCCCCcceEEecCcccchhhHHHhcCCccEEEecc
Q 048752 85 ELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIRIGDWYWESTNIWRSEFRLRLNNKICLKDWLIVQLQGIEDLELRK 164 (205)
Q Consensus 85 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 164 (205)
.+..+++|+.|++++|.++.++.. ..+. .+++|+.|++++
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~~---------------------------------------~~l~-~l~~L~~L~l~~ 129 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDISTL---------------------------------------EPLK-KLECLKSLDLFN 129 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGGG---------------------------------------GGGS-SCSCCCEEECCS
T ss_pred HHhhCCCCCEEeccCCccCcchhH---------------------------------------HHHh-cCCCCCEEEeeC
Confidence 556677888888887777665421 1122 478899999999
Q ss_pred CchhhHHhHHH----HhhhcCCCCccEEeecCCCCCCCCCCCCC
Q 048752 165 LQEQDVIYFAN----ELVKVGSSQLKFLRIHGCSDALNPPAESK 204 (205)
Q Consensus 165 ~~~~~~~~~~~----~l~~~~~~~L~~L~l~~~~~l~~lp~~~~ 204 (205)
|. +..+|. .+ ..+++|++|++++|. +.++|.+.+
T Consensus 130 N~---l~~~~~~~~~~~--~~l~~L~~L~l~~n~-~~~~~~~~~ 167 (168)
T 2ell_A 130 CE---VTNLNDYRESVF--KLLPQLTYLDGYDRE-DQEAPDSDA 167 (168)
T ss_dssp SG---GGTSTTHHHHHH--TTCSSCCEETTEETT-SCBCCSSSC
T ss_pred Cc---CcchHHHHHHHH--HhCccCcEecCCCCC-hhhcccccc
Confidence 86 566655 45 689999999999998 788887653
No 77
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=1.4e-16 Score=122.70 Aligned_cols=167 Identities=15% Similarity=0.149 Sum_probs=114.3
Q ss_pred CcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHh
Q 048752 6 DLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEE 85 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~ 85 (205)
.+.++..++++++.+++++ .+..+++|++|++++ +.++.+| + +..+++|++|++++|++..+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~-n~i~~l~-~-l~~l~~L~~L~L~~N~i~~~~~------------ 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDN-SNIQSLA-G-MQFFTNLKELHLSHNQISDLSP------------ 80 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTT-SCCCCCT-T-GGGCTTCCEEECCSSCCCCCGG------------
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcC-CCcccch-H-HhhCCCCCEEECCCCccCCChh------------
Confidence 3556667777777777777 467788888888887 4677777 3 7778888888888887776543
Q ss_pred hcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC---CCCCCCcceEEecCccc-chhhHHHhcCCccEE
Q 048752 86 LKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES---TNIWRSEFRLRLNNKIC-LKDWLIVQLQGIEDL 160 (205)
Q Consensus 86 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~---~~~~~~L~~L~l~~~~~-~~~~~~~~~~~L~~L 160 (205)
++.+++|+.|++++|.++.++.. .. ..|+.+ +.++.+.. ...+++|+.|+++.+.. ....+. .+++|+.|
T Consensus 81 l~~l~~L~~L~L~~N~l~~l~~~-~~---~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~-~l~~L~~L 155 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKNLNGI-PS---ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLG-FLSKLEVL 155 (263)
T ss_dssp GTTCSSCCEEECCSSCCSCCTTC-CC---SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGG-GCTTCCEE
T ss_pred hccCCCCCEEECCCCccCCcCcc-cc---CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHc-cCCCCCEE
Confidence 66777888888888877776654 22 334333 44443333 23677888888855432 223444 68899999
Q ss_pred EeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCC
Q 048752 161 ELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPP 200 (205)
Q Consensus 161 ~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp 200 (205)
++++|. +..+ ..+ ..+++|+.|++++|+ +...|
T Consensus 156 ~L~~N~---i~~~-~~l--~~l~~L~~L~l~~N~-~~~~~ 188 (263)
T 1xeu_A 156 DLHGNE---ITNT-GGL--TRLKKVNWIDLTGQK-CVNEP 188 (263)
T ss_dssp ECTTSC---CCBC-TTS--TTCCCCCEEEEEEEE-EECCC
T ss_pred ECCCCc---Ccch-HHh--ccCCCCCEEeCCCCc-ccCCc
Confidence 999986 5555 445 588999999999987 55544
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=1.8e-16 Score=132.22 Aligned_cols=174 Identities=14% Similarity=0.140 Sum_probs=126.7
Q ss_pred cccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChH----------------HhhcccccceeecCCC
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPN----------------VLSNLSHLEELCISRR 66 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~----------------~~~~l~~L~~L~l~~~ 66 (205)
.|+++++|++|++++|.++..++ ++.+++|++|++++ +.++.+|.. ....+++|++|++++|
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~-N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N 130 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN-NYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCS-SEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSS
T ss_pred HHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecC-CcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCC
Confidence 56788999999999999987666 88888898888888 455554421 0112455666666666
Q ss_pred ccchhhhhhhccccccHHhhcCCCCccEEEEEeeCCeeccCCcCc-ccccceEEe-eccccccC-C--CCCCCcceEEec
Q 048752 67 SFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDVNTLPRGLFL-EKLGKYRIR-IGDWYWES-T--NIWRSEFRLRLN 141 (205)
Q Consensus 67 ~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~~~-~~~~~~~~-~--~~~~~L~~L~l~ 141 (205)
.+...++ ..++.+++|+.|++++|.++..++. .+ ..++.|+.+ +.++.+.+ + ..+++|++|+++
T Consensus 131 ~l~~~~~----------~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls 199 (487)
T 3oja_A 131 KITMLRD----------LDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS 199 (487)
T ss_dssp CCCSGGG----------BCGGGGSSEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC
T ss_pred CCCCCCc----------hhhcCCCCCCEEECCCCCCCCcChH-HHhhhCCcccEEecCCCccccccccccCCCCCEEECC
Confidence 6665544 4678899999999999999886544 33 356667666 66655554 2 358899999996
Q ss_pred Cccc--chhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCC
Q 048752 142 NKIC--LKDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSD 195 (205)
Q Consensus 142 ~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~ 195 (205)
.+.. .+..+. .+++|+.|++++|. +..+|..+ ..+++|+.|++++|+.
T Consensus 200 ~N~l~~~~~~~~-~l~~L~~L~Ls~N~---l~~lp~~l--~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 200 SNKLAFMGPEFQ-SAAGVTWISLRNNK---LVLIEKAL--RFSQNLEHFDLRGNGF 249 (487)
T ss_dssp SSCCCEECGGGG-GGTTCSEEECTTSC---CCEECTTC--CCCTTCCEEECTTCCB
T ss_pred CCCCCCCCHhHc-CCCCccEEEecCCc---Ccccchhh--ccCCCCCEEEcCCCCC
Confidence 5532 334455 68999999999996 67788777 5889999999999983
No 79
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.64 E-value=3.4e-15 Score=126.40 Aligned_cols=66 Identities=24% Similarity=0.199 Sum_probs=46.1
Q ss_pred cccCcccceeEeecCCCcccc-chhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhh
Q 048752 3 VIGDLKKLEILCLRGSDIKQL-PIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWE 72 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~ 72 (205)
.|+++++|++|++++|.++.+ |..++.+++|++|++++ +.++.+|.. .+++|++|++++|++..++
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~ 137 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH-NRLQNISCC---PMASLRHLDLSFNDFDVLP 137 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT-SCCCEECSC---CCTTCSEEECCSSCCSBCC
T ss_pred hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC-CcCCccCcc---ccccCCEEECCCCCccccC
Confidence 466777777777777777766 34477777777777777 556677753 6777777777777766543
No 80
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.64 E-value=3.3e-16 Score=117.56 Aligned_cols=105 Identities=10% Similarity=0.203 Sum_probs=76.9
Q ss_pred ceeEeecCCCccccchhhccccccceEeccCCCCCccc-ChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcC
Q 048752 10 LEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVI-PPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKH 88 (205)
Q Consensus 10 L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l-p~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~ 88 (205)
-+.++++++.++.+|..+. ..+++|++++ +.++.+ +.+.+..+++|++|++++|+++.+++ ..+..
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~----------~~~~~ 79 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNN-NEFTVLEATGIFKKLPQLRKINFSNNKITDIEE----------GAFEG 79 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCS-SCCCEECCCCCGGGCTTCCEEECCSSCCCEECT----------TTTTT
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCC-CcCCccCchhhhccCCCCCEEECCCCcCCEECH----------HHhCC
Confidence 3578888888888887654 4567888888 667776 34457888888888888888887776 57788
Q ss_pred CCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC
Q 048752 89 LPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES 128 (205)
Q Consensus 89 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~ 128 (205)
+++|++|++++|.++.+++. .+..+..|+.+ +.++.+..
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~ 119 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHK-MFKGLESLKTLMLRSNRITC 119 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGG-GGTTCSSCCEEECTTSCCCC
T ss_pred CCCCCEEECCCCccCccCHh-HhcCCcCCCEEECCCCcCCe
Confidence 88888888888888887765 45656555555 44444433
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.63 E-value=3.8e-16 Score=131.98 Aligned_cols=179 Identities=17% Similarity=0.150 Sum_probs=116.8
Q ss_pred cCcccceeEeecCCCcccc---chhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 5 GDLKKLEILCLRGSDIKQL---PIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 5 ~~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
..+++|++|++++|.++.. |..+..+++|++|++++ +.+..+|.. +..+++|++|++++|.+...++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-------- 413 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE-------- 413 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCS-CSEEEEEEE-EETCTTCCEEECTTSEEESCTT--------
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCC-Ccccccccc-ccccCCCCEEEccCCccccccc--------
Confidence 3566777777777766554 45567777777777777 456666665 6777777777777777665433
Q ss_pred cHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-ecccccc---CC---CCCCCcceEEecCccc---chhhHH
Q 048752 82 SLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWE---ST---NIWRSEFRLRLNNKIC---LKDWLI 151 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~---~~---~~~~~L~~L~l~~~~~---~~~~~~ 151 (205)
...+..+++|+.|++++|.+....+. .+..++.|+.. +.++.+. .| ..+++|++|+++.+.. .+.++.
T Consensus 414 -~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 491 (570)
T 2z63_A 414 -FSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491 (570)
T ss_dssp -SCTTTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred -hhhhhcCCCCCEEeCcCCcccccchh-hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence 13567788888888888887776554 45666666666 5554443 12 3567888888855422 133455
Q ss_pred HhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCC
Q 048752 152 VQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPP 200 (205)
Q Consensus 152 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp 200 (205)
.+++|+.|++++|. ++.+|.... ..+++|++|++++|+.-...|
T Consensus 492 -~l~~L~~L~l~~n~---l~~~~~~~~-~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 492 -SLSSLQVLNMASNQ---LKSVPDGIF-DRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp -TCTTCCEEECCSSC---CSCCCTTTT-TTCTTCCEEECCSSCBCCCTT
T ss_pred -cccCCCEEeCCCCc---CCCCCHHHh-hcccCCcEEEecCCcccCCCc
Confidence 57888888888886 555544322 578888888888887444333
No 82
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.63 E-value=7.9e-16 Score=132.83 Aligned_cols=170 Identities=18% Similarity=0.208 Sum_probs=129.2
Q ss_pred ccceeEeecCCCccccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh
Q 048752 8 KKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL 86 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l 86 (205)
+++++|++++|.++.+|.. ++++++|++|++++ +.+..++++.+.++++|++|++++|.+..+++ ..+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~----------~~~ 93 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF-NTISKLEPELCQKLPMLKVLNLQHNELSQLSD----------KTF 93 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCS-SCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT----------TTT
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCC-CccCccCHHHHhcccCcCEEECCCCccCccCh----------hhh
Confidence 5789999999999888765 89999999999998 56777765568999999999999999988887 568
Q ss_pred cCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC--CC---CCCCcceEEecCccc--c-hhhHHH-hcCC
Q 048752 87 KHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES--TN---IWRSEFRLRLNNKIC--L-KDWLIV-QLQG 156 (205)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~--~~---~~~~L~~L~l~~~~~--~-~~~~~~-~~~~ 156 (205)
+.+++|++|++++|.++.+++. .+.+++.|+.. +.++.+.. +. .+++|++|+++.+.. . +..+.. ..++
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSC-TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred ccCCCCCEEECCCCccCccChh-HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence 8999999999999999888766 56777777777 66655544 22 577888888855422 1 222321 3478
Q ss_pred ccEEEeccCchhhHHhH-HHHhhhcCCCCccEEeecCCC
Q 048752 157 IEDLELRKLQEQDVIYF-ANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 157 L~~L~l~~~~~~~~~~~-~~~l~~~~~~~L~~L~l~~~~ 194 (205)
|+.|++++|. ++.+ |..+ ..+++|+.+++++|.
T Consensus 173 L~~L~L~~n~---l~~~~~~~~--~~l~~L~~L~l~~~~ 206 (680)
T 1ziw_A 173 LKKLELSSNQ---IKEFSPGCF--HAIGRLFGLFLNNVQ 206 (680)
T ss_dssp ESEEECTTCC---CCCBCTTGG--GGSSEECEEECTTCC
T ss_pred ccEEECCCCc---ccccChhhh--hhhhhhhhhhccccc
Confidence 9999998886 4444 4444 578888888888775
No 83
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=4e-16 Score=125.36 Aligned_cols=166 Identities=17% Similarity=0.175 Sum_probs=96.5
Q ss_pred eeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhh-cccccceeecCCCccchhhhhhhccccccHHhhcCC
Q 048752 11 EILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLS-NLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHL 89 (205)
Q Consensus 11 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~-~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l 89 (205)
+.++.++++++.+|..+. ..+++|++++ +.++.++.+.+. .+++|++|++++|++..+++ ..+..+
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~----------~~~~~l 87 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS----------EAFVPV 87 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCS-SCCCEECTTSSSSCCTTCCEEECCSSCCCEECT----------TTTTTC
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCC-CCCCccChhhhhhcccccCEEECCCCcCCccCh----------hhccCC
Confidence 456666666666666543 3466677766 556666655444 66667777776666666655 456666
Q ss_pred CCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC--C---CCCCCcceEEecCccc--chhh-HH--HhcCCcc
Q 048752 90 PNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES--T---NIWRSEFRLRLNNKIC--LKDW-LI--VQLQGIE 158 (205)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~--~---~~~~~L~~L~l~~~~~--~~~~-~~--~~~~~L~ 158 (205)
++|+.|++++|.++.++.. .+..+..|+.+ +.++.+.. + ..+++|+.|+++.+.. .+.. +. ..+++|+
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEF-LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp TTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred CCCCEEECCCCcCCcCCHH-HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence 6777777777766666655 44555555555 44444333 1 1455666666644321 1222 10 1467788
Q ss_pred EEEeccCchhhHHhHHHHhhhcCCCC--ccEEeecCCC
Q 048752 159 DLELRKLQEQDVIYFANELVKVGSSQ--LKFLRIHGCS 194 (205)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~l~~~~~~~--L~~L~l~~~~ 194 (205)
.|++++|. ++.+|.... ..++. ++.|++++|+
T Consensus 167 ~L~L~~N~---l~~l~~~~~-~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 167 LLDLSSNK---LKKLPLTDL-QKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp EEECCSSC---CCCCCHHHH-HHSCHHHHTTEECCSSC
T ss_pred EEECCCCC---CCccCHHHh-hhccHhhcceEEecCCC
Confidence 88887775 555553322 45665 4777777776
No 84
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.62 E-value=8.8e-16 Score=130.00 Aligned_cols=151 Identities=13% Similarity=0.159 Sum_probs=108.4
Q ss_pred ccccccceEeccCCCCCcc-cChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcCCCCccEEEEEeeCCee-c
Q 048752 28 GQLTWLTLLDLRECRKLEV-IPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDVNT-L 105 (205)
Q Consensus 28 ~~l~~L~~L~l~~c~~l~~-lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~ 105 (205)
+.+++|++|++++| .+.. .|.. +..+++|++|++++|++..++. .+..++.+++|+.|++++|.++. +
T Consensus 350 ~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~--------~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 350 PSPSSFTFLNFTQN-VFTDSVFQG-CSTLKRLQTLILQRNGLKNFFK--------VALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTT-CCSCSSCCEEECCSSCCCBTTH--------HHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred cCCCCceEEECCCC-ccccchhhh-hcccCCCCEEECCCCCcCCccc--------chhhhcCCCCCCEEECCCCcCCCcc
Confidence 56788888888884 4554 5554 7888888888888888876543 11357888889999998888887 6
Q ss_pred cCCcCcccccceEEe-eccccccC--CCCC-CCcceEEecCcc--cchhhHHHhcCCccEEEeccCchhhHHhHHHH-hh
Q 048752 106 PRGLFLEKLGKYRIR-IGDWYWES--TNIW-RSEFRLRLNNKI--CLKDWLIVQLQGIEDLELRKLQEQDVIYFANE-LV 178 (205)
Q Consensus 106 ~~~~~~~~L~~L~~~-~~~~~~~~--~~~~-~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~ 178 (205)
+.. .+..+..|+.. +.++.+.+ +..+ ++|++|+++.+. ..+.++. .+++|+.|++++|. ++.+|.. +
T Consensus 420 ~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~---l~~l~~~~~- 493 (562)
T 3a79_B 420 YDR-TCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQ---LKSVPDGVF- 493 (562)
T ss_dssp SSC-CCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSC---CCCCCTTST-
T ss_pred Chh-hhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCC---CCCCCHHHH-
Confidence 665 45666666666 66655544 4444 588888885543 2344455 67888999998886 6677776 4
Q ss_pred hcCCCCccEEeecCCCC
Q 048752 179 KVGSSQLKFLRIHGCSD 195 (205)
Q Consensus 179 ~~~~~~L~~L~l~~~~~ 195 (205)
..+++|+.|++++|+.
T Consensus 494 -~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 494 -DRLTSLQYIWLHDNPW 509 (562)
T ss_dssp -TTCTTCCCEECCSCCB
T ss_pred -hcCCCCCEEEecCCCc
Confidence 5788899999988873
No 85
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.62 E-value=8.1e-16 Score=123.60 Aligned_cols=149 Identities=19% Similarity=0.205 Sum_probs=116.8
Q ss_pred cceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhc-CCCCccEEEEEeeCCeeccCCcCc
Q 048752 33 LTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELK-HLPNLTSLELDIHDVNTLPRGLFL 111 (205)
Q Consensus 33 L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~ 111 (205)
-++++.++ +.++.+|.. + ...+++|++++|.++.+++ ..+. .+++|+.|++++|.++.+++. .+
T Consensus 20 ~~~l~c~~-~~l~~iP~~-~--~~~l~~L~Ls~N~l~~l~~----------~~~~~~l~~L~~L~L~~N~i~~i~~~-~~ 84 (361)
T 2xot_A 20 SNILSCSK-QQLPNVPQS-L--PSYTALLDLSHNNLSRLRA----------EWTPTRLTNLHSLLLSHNHLNFISSE-AF 84 (361)
T ss_dssp TTEEECCS-SCCSSCCSS-C--CTTCSEEECCSSCCCEECT----------TSSSSCCTTCCEEECCSSCCCEECTT-TT
T ss_pred CCEEEeCC-CCcCccCcc-C--CCCCCEEECCCCCCCccCh----------hhhhhcccccCEEECCCCcCCccChh-hc
Confidence 46899998 789999976 3 2458999999999998887 5566 899999999999999999876 67
Q ss_pred ccccceEEe-eccccccC-C----CCCCCcceEEecCcccc---hhhHHHhcCCccEEEeccCchhhHHhHHHHhhh--c
Q 048752 112 EKLGKYRIR-IGDWYWES-T----NIWRSEFRLRLNNKICL---KDWLIVQLQGIEDLELRKLQEQDVIYFANELVK--V 180 (205)
Q Consensus 112 ~~L~~L~~~-~~~~~~~~-~----~~~~~L~~L~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~--~ 180 (205)
..+..|+.+ +.++.+.. + ..+++|++|+++.+... +..+. .+++|+.|++++|. ++.+|..+.. .
T Consensus 85 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~---l~~l~~~~~~~~~ 160 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE-DMAQLQKLYLSQNQ---ISRFPVELIKDGN 160 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSC---CCSCCGGGTC---
T ss_pred cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhC-CcccCCEEECCCCc---CCeeCHHHhcCcc
Confidence 788888777 77766655 2 26788999999655432 34455 68999999999996 7777766521 2
Q ss_pred CCCCccEEeecCCCCCCCCCC
Q 048752 181 GSSQLKFLRIHGCSDALNPPA 201 (205)
Q Consensus 181 ~~~~L~~L~l~~~~~l~~lp~ 201 (205)
.+++|+.|++++|. ++.+|.
T Consensus 161 ~l~~L~~L~L~~N~-l~~l~~ 180 (361)
T 2xot_A 161 KLPKLMLLDLSSNK-LKKLPL 180 (361)
T ss_dssp -CTTCCEEECCSSC-CCCCCH
T ss_pred cCCcCCEEECCCCC-CCccCH
Confidence 58999999999998 888773
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=2.2e-16 Score=124.33 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=14.2
Q ss_pred ceeEeecCCCcc-ccchhh--ccccccceEeccC
Q 048752 10 LEILCLRGSDIK-QLPIEV--GQLTWLTLLDLRE 40 (205)
Q Consensus 10 L~~L~l~~~~i~-~lp~~i--~~l~~L~~L~l~~ 40 (205)
|++|++++|.++ ..|..+ ..+++|++|++++
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 126 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRN 126 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEES
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeec
Confidence 455555555443 223333 4445555555554
No 87
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=135.09 Aligned_cols=173 Identities=16% Similarity=0.108 Sum_probs=130.7
Q ss_pred cccceeEeecCCCcccc-chhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHh
Q 048752 7 LKKLEILCLRGSDIKQL-PIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEE 85 (205)
Q Consensus 7 l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~ 85 (205)
.+++++||+++|.++.+ |..++++++|++|++++|.....++++.+.++++|++|++++|.+..+++ ..
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p----------~~ 92 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP----------DA 92 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT----------TS
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH----------hH
Confidence 47899999999999877 45699999999999999777888865559999999999999999998766 58
Q ss_pred hcCCCCccEEEEEeeCCee-ccCCcCcccccceEEe-eccccccC--C----CCCCCcceEEecCccc---chhhHHHhc
Q 048752 86 LKHLPNLTSLELDIHDVNT-LPRGLFLEKLGKYRIR-IGDWYWES--T----NIWRSEFRLRLNNKIC---LKDWLIVQL 154 (205)
Q Consensus 86 l~~l~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~~~-~~~~~~~~--~----~~~~~L~~L~l~~~~~---~~~~~~~~~ 154 (205)
++++++|++|++++|.++. .+....+.++++|+.+ +.++.+.. + ..+++|++|+++.+.. .+..+. .+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l 171 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PL 171 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-HH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc-cc
Confidence 8999999999999998876 3332245777777776 66655443 1 2688899999965432 233344 23
Q ss_pred --CCccEEEeccCchhhHHhHHHHhhhcCCCC------ccEEeecCCC
Q 048752 155 --QGIEDLELRKLQEQDVIYFANELVKVGSSQ------LKFLRIHGCS 194 (205)
Q Consensus 155 --~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~------L~~L~l~~~~ 194 (205)
++|+.|++++|. .....|..+ ..+++ |+.|++++|.
T Consensus 172 ~~~~L~~L~L~~n~--l~~~~~~~~--~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 172 QGKTLSFFSLAANS--LYSRVSVDW--GKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp HHCSSCCCEECCSB--SCCCCCCCC--CSSSCTTTTCCBSEEBCSSCC
T ss_pred cCCccceEECCCCc--cccccccch--hhcCCccccCceeEEecCCCc
Confidence 899999999887 444444444 24443 9999999985
No 88
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.60 E-value=9.2e-16 Score=129.59 Aligned_cols=169 Identities=17% Similarity=0.130 Sum_probs=128.1
Q ss_pred ccceeEeecCCCccccch-hhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh
Q 048752 8 KKLEILCLRGSDIKQLPI-EVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL 86 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l 86 (205)
.++++|++++|.++.++. .+..+++|++|++++ +.++.++++.+..+++|++|++++|+++.+++ ..+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~----------~~~ 96 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL----------GAF 96 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEECT----------TTT
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCC-CcCCccCcccccCchhCCEEeCcCCcCCccCH----------hhh
Confidence 468999999999988865 489999999999999 46788877668999999999999999988876 688
Q ss_pred cCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC---CC---CCCCcceEEecCccc---chhhHHHhcCC
Q 048752 87 KHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES---TN---IWRSEFRLRLNNKIC---LKDWLIVQLQG 156 (205)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~---~~---~~~~L~~L~l~~~~~---~~~~~~~~~~~ 156 (205)
+++++|++|++++|.++.++.. .+.+++.|+.. +.++.+.. |. .+++|++|+++.+.. .+..+. .+++
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~ 174 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQ 174 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTC-SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH-HHHT
T ss_pred cCccccccccccccccccCCCc-cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHcc-chhc
Confidence 9999999999999999988775 56777777776 66554432 32 577888888855422 123344 4566
Q ss_pred c----cEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCC
Q 048752 157 I----EDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 157 L----~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 194 (205)
| ..+++++|. ++.++.... ...+|+.|++++|.
T Consensus 175 L~~~~~~L~l~~n~---l~~~~~~~~--~~~~L~~L~l~~n~ 211 (570)
T 2z63_A 175 MPLLNLSLDLSLNP---MNFIQPGAF--KEIRLHKLTLRNNF 211 (570)
T ss_dssp CTTCCCEEECTTCC---CCEECTTTT--TTCEEEEEEEESCC
T ss_pred cchhhhhcccCCCC---ceecCHHHh--ccCcceeEeccccc
Confidence 6 788888886 455544432 33479999998874
No 89
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.60 E-value=3.9e-15 Score=127.36 Aligned_cols=39 Identities=13% Similarity=0.051 Sum_probs=20.4
Q ss_pred cCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCC
Q 048752 154 LQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPA 201 (205)
Q Consensus 154 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~ 201 (205)
+++|+.|++++|. ++.+|. .+++|+.|++++|. ++.+|.
T Consensus 240 l~~L~~L~Ls~N~---L~~lp~-----~~~~L~~L~Ls~N~-L~~lp~ 278 (622)
T 3g06_A 240 PSELKELMVSGNR---LTSLPM-----LPSGLLSLSVYRNQ-LTRLPE 278 (622)
T ss_dssp CTTCCEEECCSSC---CSCCCC-----CCTTCCEEECCSSC-CCSCCG
T ss_pred CCcCcEEECCCCC---CCcCCc-----ccccCcEEeCCCCC-CCcCCH
Confidence 4455555555553 344432 24556666666664 555554
No 90
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.60 E-value=3.2e-15 Score=132.25 Aligned_cols=173 Identities=15% Similarity=0.123 Sum_probs=102.9
Q ss_pred ccceeEeecCCCccccc-hhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh
Q 048752 8 KKLEILCLRGSDIKQLP-IEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL 86 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l 86 (205)
++|+.|++++|.+..++ ..++.+++|++|++++ +.+..++++.+..+++|++|++++|.+..+.+ ..+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------~~~ 334 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY-NKINKIADEAFYGLDNLQVLNLSYNLLGELYS----------SNF 334 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEES-CCCCEECTTTTTTCSSCCEEEEESCCCSCCCS----------CSC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCC-CcCCCCChHHhcCCCCCCEEECCCCCCCccCH----------HHh
Confidence 56777777777776554 3477777777777777 45665554447777777777777777766544 456
Q ss_pred cCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccCCCCCCCcceEEecCc--------------------cc
Q 048752 87 KHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWESTNIWRSEFRLRLNNK--------------------IC 145 (205)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~~~~~~~L~~L~l~~~--------------------~~ 145 (205)
+.+++|+.|++++|.+..++.. .+..+++|+.+ +.++.+.....+++|+.|.++.+ ..
T Consensus 335 ~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l 413 (844)
T 3j0a_A 335 YGLPKVAYIDLQKNHIAIIQDQ-TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413 (844)
T ss_dssp SSCTTCCEEECCSCCCCCCCSS-CSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCC
T ss_pred cCCCCCCEEECCCCCCCccChh-hhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCcc
Confidence 6677777777777776666554 44555555555 44444444223445555554322 11
Q ss_pred c----hhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCC
Q 048752 146 L----KDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDAL 197 (205)
Q Consensus 146 ~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~ 197 (205)
. ..++. .+++|+.|++++|. +..++.......+++|+.|++++|. ++
T Consensus 414 ~~l~~~~~~~-~l~~L~~L~Ls~N~---l~~~~~~~~~~~~~~L~~L~Ls~N~-l~ 464 (844)
T 3j0a_A 414 ENLDILYFLL-RVPHLQILILNQNR---FSSCSGDQTPSENPSLEQLFLGENM-LQ 464 (844)
T ss_dssp CSSTTHHHHT-TCTTCCEEEEESCC---CCCCCSSSSSCSCTTCCBCEEESCC-CS
T ss_pred ccCchhhhhh-cCCccceeeCCCCc---ccccccccccccCCccccccCCCCc-cc
Confidence 1 11122 46777777777775 3433222111356777777777776 44
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=4.9e-15 Score=115.73 Aligned_cols=145 Identities=23% Similarity=0.266 Sum_probs=117.5
Q ss_pred CcccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 2 SVIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 2 ~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
+.++.+++|++|++++|+++.++. +..+++|++|++++ +.++.+|. +..+++|++|++++|.+..++
T Consensus 62 ~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~L~~n~i~~~~--------- 128 (291)
T 1h6t_A 62 QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE-NKVKDLSS--LKDLKKLKSLSLEHNGISDIN--------- 128 (291)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCGGG--GTTCTTCCEEECTTSCCCCCG---------
T ss_pred hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC-CcCCCChh--hccCCCCCEEECCCCcCCCCh---------
Confidence 456788999999999999999988 99999999999999 67888765 899999999999999998753
Q ss_pred cHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC---CCCCCCcceEEecCccc-chhhHHHhcCC
Q 048752 82 SLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES---TNIWRSEFRLRLNNKIC-LKDWLIVQLQG 156 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~---~~~~~~L~~L~l~~~~~-~~~~~~~~~~~ 156 (205)
.+..+++|+.|++++|.++.++ .+..++.|+.+ +.++.+.. ...+++|++|+++.+.. ....+. .+++
T Consensus 129 ---~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~l~-~l~~ 201 (291)
T 1h6t_A 129 ---GLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA-GLKN 201 (291)
T ss_dssp ---GGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGT-TCTT
T ss_pred ---hhcCCCCCCEEEccCCcCCcch---hhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChhhc-cCCC
Confidence 5778999999999999998874 44666666666 66655544 34788999999965532 223344 6899
Q ss_pred ccEEEeccCc
Q 048752 157 IEDLELRKLQ 166 (205)
Q Consensus 157 L~~L~l~~~~ 166 (205)
|+.|++++|+
T Consensus 202 L~~L~l~~n~ 211 (291)
T 1h6t_A 202 LDVLELFSQE 211 (291)
T ss_dssp CSEEEEEEEE
T ss_pred CCEEECcCCc
Confidence 9999999986
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=1.6e-16 Score=125.05 Aligned_cols=174 Identities=11% Similarity=-0.025 Sum_probs=124.1
Q ss_pred cCcccceeEeecCCCcccc-c----hhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccch---hhhhhh
Q 048752 5 GDLKKLEILCLRGSDIKQL-P----IEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQK---WEVEVE 76 (205)
Q Consensus 5 ~~l~~L~~L~l~~~~i~~l-p----~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~---~~~~i~ 76 (205)
+++++|++|++++|+++.. + ..+..+++|++|++++ +.+..++++.+..+++|++|++++|++.. ++.
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--- 189 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQ-AHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA--- 189 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEEC-CSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT---
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeC-CCcchhhHHHhccCCCCCEEECCCCCCccchhhhH---
Confidence 7789999999999998752 2 2356799999999999 56777776558899999999999998764 222
Q ss_pred ccccccHHhhcCCCCccEEEEEeeCCeeccCCc--CcccccceEEe-eccccccC--CC---CC---CCcceEEecCccc
Q 048752 77 GAKNASLEELKHLPNLTSLELDIHDVNTLPRGL--FLEKLGKYRIR-IGDWYWES--TN---IW---RSEFRLRLNNKIC 145 (205)
Q Consensus 77 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~~~-~~~~~~~~--~~---~~---~~L~~L~l~~~~~ 145 (205)
...++.+++|++|++++|.++.++... .+..++.|+.+ +.++.+.. |. .+ ++|++|+++.+..
T Consensus 190 ------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 190 ------ALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp ------TSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC
T ss_pred ------HHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC
Confidence 013368899999999999987655421 12344444444 45544433 22 23 6899999965532
Q ss_pred c--hhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCC
Q 048752 146 L--KDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALN 198 (205)
Q Consensus 146 ~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~ 198 (205)
. +.+ .+++|+.|++++|. ++.+|. . ..+++|+.|++++|+ ++.
T Consensus 264 ~~lp~~---~~~~L~~L~Ls~N~---l~~~~~-~--~~l~~L~~L~L~~N~-l~~ 308 (310)
T 4glp_A 264 EQVPKG---LPAKLRVLDLSSNR---LNRAPQ-P--DELPEVDNLTLDGNP-FLV 308 (310)
T ss_dssp CSCCSC---CCSCCSCEECCSCC---CCSCCC-T--TSCCCCSCEECSSTT-TSC
T ss_pred Cchhhh---hcCCCCEEECCCCc---CCCCch-h--hhCCCccEEECcCCC-CCC
Confidence 2 222 34899999999997 666654 3 589999999999998 543
No 93
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=2.8e-15 Score=112.46 Aligned_cols=124 Identities=17% Similarity=0.251 Sum_probs=100.5
Q ss_pred ccceeEeecCCCccccch-hhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh
Q 048752 8 KKLEILCLRGSDIKQLPI-EVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL 86 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l 86 (205)
.+++.|++++|+++.+|. .+..+++|++|++++ +.+..++++.+..+++|++|++++|.++.+++ ..+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~----------~~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRSLNSLVLYGNKITELPK----------SLF 100 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCS-SCCCEECTTTTTTCSSCCEEECCSSCCCCCCT----------TTT
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC-CcCCCcCHHHhhCCcCCCEEECCCCcCCccCH----------hHc
Confidence 579999999999999887 489999999999999 67888755559999999999999999999888 567
Q ss_pred cCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-CC----CCCCcceEEecCc
Q 048752 87 KHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-TN----IWRSEFRLRLNNK 143 (205)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~~----~~~~L~~L~l~~~ 143 (205)
..+++|+.|++++|.++.+++. .+..+..|+.+ +.++.+.. +. .+++|++|+++.+
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCCCCCEeCHH-HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 8999999999999999998776 66777777776 66665554 21 3455666666443
No 94
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.59 E-value=3e-15 Score=123.83 Aligned_cols=128 Identities=24% Similarity=0.286 Sum_probs=57.6
Q ss_pred ccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhh--------
Q 048752 4 IGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEV-------- 75 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i-------- 75 (205)
++++++|++|++++|+++.+|.. ..+|++|++++ +.++.+| + +..+++|++|++++|++..+|...
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~-n~l~~l~-~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l 222 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGN-NQLEELP-E-LQNLPFLTAIYADNNSLKKLPDLPLSLESIVA 222 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS-SCCSSCC-C-CTTCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred cCCCCCCCEEECCCCcCcccCCC---cccccEEECcC-CcCCcCc-c-ccCCCCCCEEECCCCcCCcCCCCcCcccEEEC
Confidence 34444455555555444444432 13445555554 3444444 2 556666666666666655443311
Q ss_pred hccccccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEeeccccccC-CCCCCCcceEEec
Q 048752 76 EGAKNASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIRIGDWYWES-TNIWRSEFRLRLN 141 (205)
Q Consensus 76 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~-~~~~~~L~~L~l~ 141 (205)
.+.....+..++.+++|+.|++++|.++.++... .+++.|. +.++.+.. |...++|++|+++
T Consensus 223 ~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~--l~~N~l~~l~~~~~~L~~L~ls 285 (454)
T 1jl5_A 223 GNNILEELPELQNLPFLTTIYADNNLLKTLPDLP--PSLEALN--VRDNYLTDLPELPQSLTFLDVS 285 (454)
T ss_dssp CSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCC--TTCCEEE--CCSSCCSCCCCCCTTCCEEECC
T ss_pred cCCcCCcccccCCCCCCCEEECCCCcCCcccccc--cccCEEE--CCCCcccccCcccCcCCEEECc
Confidence 1111111113445555566666555555544321 2233222 22333333 3334555555553
No 95
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.58 E-value=2.5e-15 Score=128.05 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=125.6
Q ss_pred cccCcccceeEeecCCCccccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
.|.++++|++|+|++|+|+.+|+. |.++++|++|+|++ +.++.+|+++|..+++|++|++++|+++.+++
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~-N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~-------- 141 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLEN-------- 141 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCCEECGGGGTTCTTCCEEECTTSCCCCSTT--------
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC-CcCCCCCHHHhcCCCCCCEEECCCCcCCCCCh--------
Confidence 578999999999999999999765 99999999999999 68999998879999999999999999999887
Q ss_pred cHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC--CCCCCC-------cceEEecCccc--chhh
Q 048752 82 SLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES--TNIWRS-------EFRLRLNNKIC--LKDW 149 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~--~~~~~~-------L~~L~l~~~~~--~~~~ 149 (205)
..++++++|++|++++|.++.++....+..++.|+.+ +.++.+.. +..+.. ...+++..+.. .+..
T Consensus 142 --~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~ 219 (635)
T 4g8a_A 142 --FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 219 (635)
T ss_dssp --CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred --hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcc
Confidence 5689999999999999999876433245667777766 66655544 222221 23455543321 1211
Q ss_pred HHHhcCCccEEEeccCchhhHHhH-HHHhhhcCCCCccEEeec
Q 048752 150 LIVQLQGIEDLELRKLQEQDVIYF-ANELVKVGSSQLKFLRIH 191 (205)
Q Consensus 150 ~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~~~~~~L~~L~l~ 191 (205)
.. ....+..+++.++. ....+ +..+ .+++.++...+.
T Consensus 220 ~~-~~~~~~~l~l~~n~--~~~~~~~~~~--~~l~~l~~~~l~ 257 (635)
T 4g8a_A 220 AF-KEIRLHKLTLRNNF--DSLNVMKTCI--QGLAGLEVHRLV 257 (635)
T ss_dssp TT-TTCEEEEEEEESCC--SSHHHHHHHH--HTTTTCEEEEEE
T ss_pred cc-cchhhhhhhhhccc--ccccccchhh--cCCccccccccc
Confidence 12 23456778888775 33333 3344 578887776654
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=2.8e-15 Score=119.95 Aligned_cols=180 Identities=18% Similarity=0.198 Sum_probs=123.2
Q ss_pred cccCcccceeEeecCCCc-cccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhcccc
Q 048752 3 VIGDLKKLEILCLRGSDI-KQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKN 80 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i-~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~ 80 (205)
.|.++++|++|+|++|++ +.+|.. +.++++++.+...+++.+..++++.+..+++|++|++++|.+..+++
T Consensus 49 ~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~------- 121 (350)
T 4ay9_X 49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD------- 121 (350)
T ss_dssp SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC-------
T ss_pred HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCc-------
Confidence 478899999999999998 557654 78999988766655588999988778999999999999999988776
Q ss_pred ccHHhhcCCCCccEEEEEe-eCCeeccCCcCccccc-ceEEe-eccccccC-CC---CCCCcceEEecC-c--ccchh-h
Q 048752 81 ASLEELKHLPNLTSLELDI-HDVNTLPRGLFLEKLG-KYRIR-IGDWYWES-TN---IWRSEFRLRLNN-K--ICLKD-W 149 (205)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~-~L~~~-~~~~~~~~-~~---~~~~L~~L~l~~-~--~~~~~-~ 149 (205)
.......++..|++.+ +.+..++.. .+..+. .++.. +.++.+.. +. ....++.+.+.. + ...+. .
T Consensus 122 ---~~~~~~~~l~~l~l~~~~~i~~l~~~-~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~ 197 (350)
T 4ay9_X 122 ---VHKIHSLQKVLLDIQDNINIHTIERN-SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197 (350)
T ss_dssp ---CTTCCBSSCEEEEEESCTTCCEECTT-SSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTT
T ss_pred ---hhhcccchhhhhhhcccccccccccc-chhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHH
Confidence 3444555666777765 466666665 444443 34444 55555544 22 223456666632 2 12222 2
Q ss_pred HHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCC
Q 048752 150 LIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPA 201 (205)
Q Consensus 150 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~ 201 (205)
+. .+++|+.|++++|. ++.+|.. .+.+|+.|++.+|..++++|.
T Consensus 198 f~-~l~~L~~LdLs~N~---l~~lp~~----~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 198 FH-GASGPVILDISRTR---IHSLPSY----GLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp TT-TEECCSEEECTTSC---CCCCCSS----SCTTCCEEECTTCTTCCCCCC
T ss_pred hc-cCcccchhhcCCCC---cCccChh----hhccchHhhhccCCCcCcCCC
Confidence 34 57788888888775 6666643 367777777777777777774
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=4.3e-15 Score=112.10 Aligned_cols=109 Identities=24% Similarity=0.323 Sum_probs=90.8
Q ss_pred cccceeEeecCCCcccc-chhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHh
Q 048752 7 LKKLEILCLRGSDIKQL-PIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEE 85 (205)
Q Consensus 7 l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~ 85 (205)
.++|++|++++|.++.+ |..+..+++|++|++++ +.++.+|.+.+..+++|++|++++|+++.+++ ..
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~----------~~ 107 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS----------AV 107 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------TT
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCC-CCCCCcChhhcccCCCcCEEECCCCcCCccCh----------hH
Confidence 36899999999999887 45599999999999999 67899998768999999999999999998887 56
Q ss_pred hcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC
Q 048752 86 LKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES 128 (205)
Q Consensus 86 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~ 128 (205)
+..+++|+.|++++|.++.+|..+ ..+..|+.+ +.++.+..
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~lp~~~--~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTELPRGI--ERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTG--GGCTTCSEEECCSSCCCC
T ss_pred hCcchhhCeEeccCCcccccCccc--ccCCCCCEEECCCCcCCc
Confidence 789999999999999999887654 555555555 45544443
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=5.5e-15 Score=110.87 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=97.6
Q ss_pred ccceeEeecCCCccccch--hhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHh
Q 048752 8 KKLEILCLRGSDIKQLPI--EVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEE 85 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~ 85 (205)
..+++|++++|+++.++. .+..+++|++|++++ +.++.++++.+..+++|++|++++|.++.+++ ..
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~----------~~ 100 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN-NKITDIEEGAFEGASGVNEILLTSNRLENVQH----------KM 100 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCCCCG----------GG
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC-CcCCEECHHHhCCCCCCCEEECCCCccCccCH----------hH
Confidence 357899999999998843 389999999999999 67888887669999999999999999998887 67
Q ss_pred hcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC--CC---CCCCcceEEec
Q 048752 86 LKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES--TN---IWRSEFRLRLN 141 (205)
Q Consensus 86 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~--~~---~~~~L~~L~l~ 141 (205)
++.+++|++|++++|.++.+++. .+..+..|+.+ +.++.+.. |. .+++|++|+++
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred hcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 89999999999999999998766 56767776666 55555544 21 34455555553
No 99
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.57 E-value=6.2e-15 Score=126.15 Aligned_cols=173 Identities=17% Similarity=0.164 Sum_probs=98.4
Q ss_pred cccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHH--hh--------------cccccceeecCCCccch
Q 048752 7 LKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNV--LS--------------NLSHLEELCISRRSFQK 70 (205)
Q Consensus 7 l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~--~~--------------~l~~L~~L~l~~~~~~~ 70 (205)
+++|++|++++|+++.+|. .+++|++|++++ +.+..+|... +. .+++|++|++++|.+..
T Consensus 80 l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~l~~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPV---LPPGLLELSIFS-NPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS 155 (622)
T ss_dssp CTTCCEEEECSCCCSCCCC---CCTTCCEEEECS-CCCCCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC
T ss_pred CCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC-CcCCCCCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCC
Confidence 4556666666666665554 445555555555 3344433210 00 12555666666665555
Q ss_pred hhhhhhc--------cccccHHhhcCCCCccEEEEEeeCCeeccCCcCcccc-----------------cceEEe-eccc
Q 048752 71 WEVEVEG--------AKNASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKL-----------------GKYRIR-IGDW 124 (205)
Q Consensus 71 ~~~~i~~--------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L-----------------~~L~~~-~~~~ 124 (205)
++..+.. +....+. ..+++|+.|++++|.++.++... .+| .+|+.+ +.++
T Consensus 156 l~~~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~~~~--~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N 231 (622)
T 3g06_A 156 LPALPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLPTLP--SELYKLWAYNNRLTSLPALPSGLKELIVSGN 231 (622)
T ss_dssp CCCCCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCCTTCCEEECCSS
T ss_pred cCCccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCCCcc--chhhEEECcCCcccccCCCCCCCCEEEccCC
Confidence 4431100 0000000 22366777777777776655432 222 223333 4445
Q ss_pred cccC-CCCCCCcceEEecCcccchhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCC
Q 048752 125 YWES-TNIWRSEFRLRLNNKICLKDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 125 ~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 194 (205)
.+.. |..+++|++|+++.+.... +...+++|+.|++++|. ++.+|..+ .++++|+.|++++|+
T Consensus 232 ~L~~lp~~l~~L~~L~Ls~N~L~~--lp~~~~~L~~L~Ls~N~---L~~lp~~l--~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 232 RLTSLPVLPSELKELMVSGNRLTS--LPMLPSGLLSLSVYRNQ---LTRLPESL--IHLSSETTVNLEGNP 295 (622)
T ss_dssp CCSCCCCCCTTCCEEECCSSCCSC--CCCCCTTCCEEECCSSC---CCSCCGGG--GGSCTTCEEECCSCC
T ss_pred ccCcCCCCCCcCcEEECCCCCCCc--CCcccccCcEEeCCCCC---CCcCCHHH--hhccccCEEEecCCC
Confidence 5555 5567788888885553221 11157899999999996 67888887 699999999999998
No 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=2.5e-15 Score=119.16 Aligned_cols=173 Identities=20% Similarity=0.180 Sum_probs=100.4
Q ss_pred ccCcccceeEeecCCCccc--cchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCC-ccchhhhhhhcccc
Q 048752 4 IGDLKKLEILCLRGSDIKQ--LPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRR-SFQKWEVEVEGAKN 80 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~-~~~~~~~~i~~~~~ 80 (205)
+.++++|++|++++|.++. +|..+..+++|++|++++|......+.. +..+++|++|++++| .++....
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l------- 160 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFAL------- 160 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHH-------
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHH-------
Confidence 3456777777777777653 6666777778888888775422244444 667777888887777 4543111
Q ss_pred ccHHhhcCCCCccEEEEEee-CCee--ccCCcCccccc-ceEEe-eccc--cccC------CCCCCCcceEEecCcc---
Q 048752 81 ASLEELKHLPNLTSLELDIH-DVNT--LPRGLFLEKLG-KYRIR-IGDW--YWES------TNIWRSEFRLRLNNKI--- 144 (205)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~~-~~~~--~~~~~~~~~L~-~L~~~-~~~~--~~~~------~~~~~~L~~L~l~~~~--- 144 (205)
...+..+++|+.|++++| .++. ++.. +..++ .|+.+ +.++ .+.. ...+++|++|+++.+.
T Consensus 161 --~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 161 --QTLLSSCSRLDELNLSWCFDFTEKHVQVA--VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp --HHHHHHCTTCCEEECCCCTTCCHHHHHHH--HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred --HHHHhcCCCCCEEcCCCCCCcChHHHHHH--HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence 124667777888888777 6654 2221 23333 33333 3332 2211 1256777777775443
Q ss_pred -cchhhHHHhcCCccEEEeccCchhhHHhH-HHHhhhcCCCCccEEeecCC
Q 048752 145 -CLKDWLIVQLQGIEDLELRKLQEQDVIYF-ANELVKVGSSQLKFLRIHGC 193 (205)
Q Consensus 145 -~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~~~~~~L~~L~l~~~ 193 (205)
..+..+. .+++|+.|++++|. .+.+. ...+ ..+++|++|++++|
T Consensus 237 ~~~~~~l~-~l~~L~~L~l~~~~--~~~~~~~~~l--~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 237 NDCFQEFF-QLNYLQHLSLSRCY--DIIPETLLEL--GEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGG-GCTTCCEEECTTCT--TCCGGGGGGG--GGCTTCCEEECTTS
T ss_pred HHHHHHHh-CCCCCCEeeCCCCC--CCCHHHHHHH--hcCCCCCEEeccCc
Confidence 1223344 46778888887774 23221 1234 46777777777777
No 101
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=7.8e-15 Score=107.92 Aligned_cols=124 Identities=17% Similarity=0.246 Sum_probs=95.0
Q ss_pred eeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcCCC
Q 048752 11 EILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLP 90 (205)
Q Consensus 11 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~ 90 (205)
+++++++++++.+|..+. .+|++|++++ +.++.+|.. +..+++|++|++++|.++.+++ ..+..++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~-n~i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~----------~~f~~l~ 78 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDG-NQFTLVPKE-LSNYKHLTLIDLSNNRISTLSN----------QSFSNMT 78 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCS-SCCCSCCGG-GGGCTTCCEEECCSSCCCCCCT----------TTTTTCT
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCC-CcCchhHHH-hhcccCCCEEECCCCcCCEeCH----------hHccCCC
Confidence 678999999999998654 6899999999 678899965 8999999999999999998887 6789999
Q ss_pred CccEEEEEeeCCeeccCCcCcccccceEEe-eccccccCCCCCCCcceEEecCcccchhhHHHhcCCccEEEeccCc
Q 048752 91 NLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWESTNIWRSEFRLRLNNKICLKDWLIVQLQGIEDLELRKLQ 166 (205)
Q Consensus 91 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 166 (205)
+|++|++++|.++.+++. .+..++.|+.+ +.++.+.. ..+..+. .+++|+.|++++|+
T Consensus 79 ~L~~L~Ls~N~l~~i~~~-~f~~l~~L~~L~L~~N~l~~----------------~~~~~~~-~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 79 QLLTLILSYNRLRCIPPR-TFDGLKSLRLLSLHGNDISV----------------VPEGAFN-DLSALSHLAIGANP 137 (193)
T ss_dssp TCCEEECCSSCCCBCCTT-TTTTCTTCCEEECCSSCCCB----------------CCTTTTT-TCTTCCEEECCSSC
T ss_pred CCCEEECCCCccCEeCHH-HhCCCCCCCEEECCCCCCCe----------------eChhhhh-cCccccEEEeCCCC
Confidence 999999999999998876 55655555554 44443333 0011133 46788888888775
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=3.2e-15 Score=118.45 Aligned_cols=169 Identities=17% Similarity=0.094 Sum_probs=126.3
Q ss_pred ccceeEeecCCCccccchhhccccccceEeccCCCCCc-c-cChHHhhcccccceeecCCCccchhhhhhhccccccHHh
Q 048752 8 KKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLE-V-IPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEE 85 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~-~-lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~ 85 (205)
++++.|+++++.++..+..+..+++|++|++++|. +. . +|.. +..+++|++|++++|.+....+ ..
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~-~~~~~~L~~L~L~~~~l~~~~~----------~~ 137 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGI-LSQCSKLQNLSLEGLRLSDPIV----------NT 137 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHH-HTTBCCCSEEECTTCBCCHHHH----------HH
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHH-HhhCCCCCEEeCcCcccCHHHH----------HH
Confidence 78899999999998877778889999999999965 44 3 6654 8999999999999998876544 58
Q ss_pred hcCCCCccEEEEEee-CCee--ccCCcCcccccceEEe-eccc-cccC------CCCCC-CcceEEecCcc--cc----h
Q 048752 86 LKHLPNLTSLELDIH-DVNT--LPRGLFLEKLGKYRIR-IGDW-YWES------TNIWR-SEFRLRLNNKI--CL----K 147 (205)
Q Consensus 86 l~~l~~L~~L~l~~~-~~~~--~~~~~~~~~L~~L~~~-~~~~-~~~~------~~~~~-~L~~L~l~~~~--~~----~ 147 (205)
++.+++|++|++++| .++. ++.. +.+++.|+.+ +.++ .+.. ...++ +|++|+++.+. .. +
T Consensus 138 l~~~~~L~~L~L~~~~~l~~~~l~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~ 215 (336)
T 2ast_B 138 LAKNSNLVRLNLSGCSGFSEFALQTL--LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215 (336)
T ss_dssp HTTCTTCSEEECTTCBSCCHHHHHHH--HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH
T ss_pred HhcCCCCCEEECCCCCCCCHHHHHHH--HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH
Confidence 889999999999999 6764 3332 2444555554 4443 3332 23677 99999997652 11 2
Q ss_pred hhHHHhcCCccEEEeccCchhhHH-hHHHHhhhcCCCCccEEeecCCCC
Q 048752 148 DWLIVQLQGIEDLELRKLQEQDVI-YFANELVKVGSSQLKFLRIHGCSD 195 (205)
Q Consensus 148 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~~~~~~L~~L~l~~~~~ 195 (205)
..+. .+++|+.|++++|. .++ ..+..+ ..+++|++|++++|..
T Consensus 216 ~~~~-~~~~L~~L~l~~~~--~l~~~~~~~l--~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 216 TLVR-RCPNLVHLDLSDSV--MLKNDCFQEF--FQLNYLQHLSLSRCYD 259 (336)
T ss_dssp HHHH-HCTTCSEEECTTCT--TCCGGGGGGG--GGCTTCCEEECTTCTT
T ss_pred HHHh-hCCCCCEEeCCCCC--cCCHHHHHHH--hCCCCCCEeeCCCCCC
Confidence 3333 68999999999997 443 345566 5889999999999963
No 103
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=3.3e-15 Score=108.21 Aligned_cols=131 Identities=18% Similarity=0.203 Sum_probs=94.6
Q ss_pred cccCcccceeEeecCCCccccchhhcccc-ccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIEVGQLT-WLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~i~~l~-~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
.+..+.+|+.|++++|.++.+|. +..+. +|++|++++ +.++.++ . +..+++|++|++++|.+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~-N~l~~~~-~-l~~l~~L~~L~Ls~N~l~~~~~-------- 81 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSD-NEIRKLD-G-FPLLRRLKTLLVNNNRICRIGE-------- 81 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCS-SCCCEEC-C-CCCCSSCCEEECCSSCCCEECS--------
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCC-CCCCccc-c-cccCCCCCEEECCCCcccccCc--------
Confidence 35578899999999999998875 55555 999999999 5778774 3 8899999999999999998876
Q ss_pred cHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEeeccccccCCCCCCCcceEEecCccc--chhh----HHHhcC
Q 048752 82 SLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIRIGDWYWESTNIWRSEFRLRLNNKIC--LKDW----LIVQLQ 155 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~----~~~~~~ 155 (205)
..++.+++|+.|++++|.+..++..-.+..++ +|++|+++.+.. .+.. +. .++
T Consensus 82 --~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~------------------~L~~L~l~~N~i~~~~~~~~~~~~-~l~ 140 (176)
T 1a9n_A 82 --GLDQALPDLTELILTNNSLVELGDLDPLASLK------------------SLTYLCILRNPVTNKKHYRLYVIY-KVP 140 (176)
T ss_dssp --CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCT------------------TCCEEECCSSGGGGSTTHHHHHHH-HCT
T ss_pred --chhhcCCCCCEEECCCCcCCcchhhHhhhcCC------------------CCCEEEecCCCCCCcHhHHHHHHH-HCC
Confidence 34588999999999999998776511223333 344444422211 1221 33 578
Q ss_pred CccEEEeccCc
Q 048752 156 GIEDLELRKLQ 166 (205)
Q Consensus 156 ~L~~L~l~~~~ 166 (205)
+|+.|++++|.
T Consensus 141 ~L~~Ld~~~n~ 151 (176)
T 1a9n_A 141 QVRVLDFQKVK 151 (176)
T ss_dssp TCSEETTEECC
T ss_pred ccceeCCCcCC
Confidence 88888888776
No 104
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=4.6e-15 Score=104.41 Aligned_cols=129 Identities=22% Similarity=0.215 Sum_probs=98.9
Q ss_pred CcccceeEeecCCCcc--ccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccH
Q 048752 6 DLKKLEILCLRGSDIK--QLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASL 83 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~ 83 (205)
..++|+.|++++|.++ .+|..++.+++|++|++++ +.++.+ .. +..+++|++|++++|.+....+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~-~~-~~~l~~L~~L~Ls~n~i~~~~~---------- 81 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTIN-VGLTSI-AN-LPKLNKLKKLELSDNRVSGGLE---------- 81 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTT-SCCCCC-TT-CCCCTTCCEEECCSSCCCSCTH----------
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcC-CCCCCc-hh-hhcCCCCCEEECCCCcccchHH----------
Confidence 4578999999999998 8888889999999999999 567777 33 8899999999999999987333
Q ss_pred HhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEeeccccccCCCCCCCcceEEecCcccchhhHHHhcCCccEEEec
Q 048752 84 EELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIRIGDWYWESTNIWRSEFRLRLNNKICLKDWLIVQLQGIEDLELR 163 (205)
Q Consensus 84 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 163 (205)
..++.+++|++|++++|.++.++.. ..+. .+++|++|+++
T Consensus 82 ~~~~~l~~L~~L~ls~N~i~~~~~~---------------------------------------~~~~-~l~~L~~L~l~ 121 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGNKIKDLSTI---------------------------------------EPLK-KLENLKSLDLF 121 (149)
T ss_dssp HHHHHCTTCCEEECTTSCCCSHHHH---------------------------------------GGGG-GCTTCCEEECT
T ss_pred HHhhhCCCCCEEECCCCcCCChHHH---------------------------------------HHHh-hCCCCCEEeCc
Confidence 3667789999999999888765311 1122 46788888888
Q ss_pred cCchhhHHhHHH----HhhhcCCCCccEEeecC
Q 048752 164 KLQEQDVIYFAN----ELVKVGSSQLKFLRIHG 192 (205)
Q Consensus 164 ~~~~~~~~~~~~----~l~~~~~~~L~~L~l~~ 192 (205)
+|. ++.+|. .+ ..+++|+.|++++
T Consensus 122 ~N~---l~~~~~~~~~~~--~~l~~L~~L~l~d 149 (149)
T 2je0_A 122 NCE---VTNLNDYRENVF--KLLPQLTYLDGYD 149 (149)
T ss_dssp TCG---GGGSTTHHHHHH--HHCTTCCEETTBC
T ss_pred CCc---ccchHHHHHHHH--HHCCCcccccCCC
Confidence 885 555543 34 5788888887764
No 105
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.55 E-value=2e-14 Score=118.88 Aligned_cols=40 Identities=28% Similarity=0.401 Sum_probs=24.0
Q ss_pred cccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhh
Q 048752 31 TWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEV 73 (205)
Q Consensus 31 ~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 73 (205)
++|++|++++ +.++.+| + +..+++|++|++++|++..+|.
T Consensus 131 ~~L~~L~L~~-n~l~~lp-~-~~~l~~L~~L~l~~N~l~~lp~ 170 (454)
T 1jl5_A 131 PLLEYLGVSN-NQLEKLP-E-LQNSSFLKIIDVDNNSLKKLPD 170 (454)
T ss_dssp TTCCEEECCS-SCCSSCC-C-CTTCTTCCEEECCSSCCSCCCC
T ss_pred CCCCEEECcC-CCCCCCc-c-cCCCCCCCEEECCCCcCcccCC
Confidence 4566666666 3455566 3 6666666666666666665443
No 106
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=9.1e-15 Score=118.29 Aligned_cols=190 Identities=15% Similarity=0.127 Sum_probs=101.2
Q ss_pred ccCcccceeEeecCCCcc----ccchhh-------ccccccceEeccCCCCCcc-----cChHHhhcccccceeecCCCc
Q 048752 4 IGDLKKLEILCLRGSDIK----QLPIEV-------GQLTWLTLLDLRECRKLEV-----IPPNVLSNLSHLEELCISRRS 67 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~----~lp~~i-------~~l~~L~~L~l~~c~~l~~-----lp~~~~~~l~~L~~L~l~~~~ 67 (205)
+.++++|++|++++|.+. .+|..+ ..+++|++|++++| .+.. +|.. +..+++|++|++++|.
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSC
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCC
Confidence 445666666666665332 223332 45666666666663 3333 4443 5556666666666665
Q ss_pred cchhhh-----hh------------hc--------c------ccccHHhhcCCCCccEEEEEeeCCee-----ccCCcCc
Q 048752 68 FQKWEV-----EV------------EG--------A------KNASLEELKHLPNLTSLELDIHDVNT-----LPRGLFL 111 (205)
Q Consensus 68 ~~~~~~-----~i------------~~--------~------~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~ 111 (205)
+...+. .+ .. + .......+..+++|++|++++|.+.. +.+. .+
T Consensus 134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~-~l 212 (386)
T 2ca6_A 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE-GL 212 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT-TG
T ss_pred CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH-Hh
Confidence 543221 00 00 0 00111355677788888888877762 1221 22
Q ss_pred ccccceEEe-ecccccc-----C----CCCCCCcceEEecCcccchh-------hHHH-hcCCccEEEeccCchhh--HH
Q 048752 112 EKLGKYRIR-IGDWYWE-----S----TNIWRSEFRLRLNNKICLKD-------WLIV-QLQGIEDLELRKLQEQD--VI 171 (205)
Q Consensus 112 ~~L~~L~~~-~~~~~~~-----~----~~~~~~L~~L~l~~~~~~~~-------~~~~-~~~~L~~L~l~~~~~~~--~~ 171 (205)
..++.|+.+ +.++.+. . ...+++|++|+++.+..... ++.. .+++|+.|++++|.... ..
T Consensus 213 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence 444445444 4444332 1 23567888888865543221 2210 16788888888886111 11
Q ss_pred hHHHHhhhcCCCCccEEeecCCCCCCC
Q 048752 172 YFANELVKVGSSQLKFLRIHGCSDALN 198 (205)
Q Consensus 172 ~~~~~l~~~~~~~L~~L~l~~~~~l~~ 198 (205)
.+|..+. ..+++|++|++++|+ ++.
T Consensus 293 ~l~~~l~-~~l~~L~~L~l~~N~-l~~ 317 (386)
T 2ca6_A 293 TLKTVID-EKMPDLLFLELNGNR-FSE 317 (386)
T ss_dssp HHHHHHH-HHCTTCCEEECTTSB-SCT
T ss_pred HHHHHHH-hcCCCceEEEccCCc-CCc
Confidence 3676663 457888888888887 443
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=3.3e-14 Score=104.74 Aligned_cols=130 Identities=17% Similarity=0.169 Sum_probs=97.7
Q ss_pred CcccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcc-cChHHhhcccccceeecCCCccchhhhhhhcccc
Q 048752 2 SVIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEV-IPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKN 80 (205)
Q Consensus 2 ~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~-lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~ 80 (205)
+.+..+++|++|++++|.++.++ .+..+++|++|++++ +.++. .+.. +..+++|++|++++|.++...+
T Consensus 60 ~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~-n~l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~------- 129 (197)
T 4ezg_A 60 TGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMG-KDVTSDKIPN-LSGLTSLTLLDISHSAHDDSIL------- 129 (197)
T ss_dssp TTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEEC-TTCBGGGSCC-CTTCTTCCEEECCSSBCBGGGH-------
T ss_pred HHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeEC-CccCcccChh-hcCCCCCCEEEecCCccCcHhH-------
Confidence 45678899999999999888776 588999999999999 55664 5665 8999999999999999987554
Q ss_pred ccHHhhcCCCCccEEEEEeeC-CeeccCCcCcccccceEEe-eccccccCCCCCCCcceEEecCcccchhhHHHhcCCcc
Q 048752 81 ASLEELKHLPNLTSLELDIHD-VNTLPRGLFLEKLGKYRIR-IGDWYWESTNIWRSEFRLRLNNKICLKDWLIVQLQGIE 158 (205)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~ 158 (205)
..++.+++|+.|++++|. ++.++ .+..++.|+.+ +.++.+.. ...+. .+++|+
T Consensus 130 ---~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~------------------~~~l~-~l~~L~ 184 (197)
T 4ezg_A 130 ---TKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHD------------------YRGIE-DFPKLN 184 (197)
T ss_dssp ---HHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCC------------------CTTGG-GCSSCC
T ss_pred ---HHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcC------------------hHHhc-cCCCCC
Confidence 588999999999999997 77775 23444444333 33332222 11233 578888
Q ss_pred EEEeccCc
Q 048752 159 DLELRKLQ 166 (205)
Q Consensus 159 ~L~l~~~~ 166 (205)
.|++++|+
T Consensus 185 ~L~l~~N~ 192 (197)
T 4ezg_A 185 QLYAFSQT 192 (197)
T ss_dssp EEEECBC-
T ss_pred EEEeeCcc
Confidence 88888875
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=7.5e-15 Score=113.07 Aligned_cols=142 Identities=21% Similarity=0.240 Sum_probs=112.6
Q ss_pred ccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccH
Q 048752 4 IGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASL 83 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~ 83 (205)
+..+++|++|++++|+++.+| .++.+++|++|++++ +.++.+++ +..+++|++|++++|++..+++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~-N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~---------- 102 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSH-NQISDLSP--LKDLTKLEELSVNRNRLKNLNG---------- 102 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCS-SCCCCCGG--GTTCSSCCEEECCSSCCSCCTT----------
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCC-CccCCChh--hccCCCCCEEECCCCccCCcCc----------
Confidence 456889999999999999998 689999999999999 67888887 8899999999999999988765
Q ss_pred HhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC---CCCCCCcceEEecCccc-chhhHHHhcCCcc
Q 048752 84 EELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES---TNIWRSEFRLRLNNKIC-LKDWLIVQLQGIE 158 (205)
Q Consensus 84 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~---~~~~~~L~~L~l~~~~~-~~~~~~~~~~~L~ 158 (205)
+.. ++|+.|++++|.++.++ .+..++.|+.+ +.++.+.. ...+++|++|+++.+.. ....+. .+++|+
T Consensus 103 --~~~-~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~-~l~~L~ 175 (263)
T 1xeu_A 103 --IPS-ACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLT-RLKKVN 175 (263)
T ss_dssp --CCC-SSCCEEECCSSCCSBSG---GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTST-TCCCCC
T ss_pred --ccc-CcccEEEccCCccCCCh---hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhc-cCCCCC
Confidence 223 88999999999998875 34666666666 66655554 23678899999965532 223344 688999
Q ss_pred EEEeccCc
Q 048752 159 DLELRKLQ 166 (205)
Q Consensus 159 ~L~l~~~~ 166 (205)
.|++++|.
T Consensus 176 ~L~l~~N~ 183 (263)
T 1xeu_A 176 WIDLTGQK 183 (263)
T ss_dssp EEEEEEEE
T ss_pred EEeCCCCc
Confidence 99999886
No 109
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=1.3e-14 Score=117.34 Aligned_cols=94 Identities=16% Similarity=0.238 Sum_probs=65.8
Q ss_pred ccCcccceeEeecCCCccc-----cchhhccccccceEeccCC--CCCc-ccChHH------hhcccccceeecCCCccc
Q 048752 4 IGDLKKLEILCLRGSDIKQ-----LPIEVGQLTWLTLLDLREC--RKLE-VIPPNV------LSNLSHLEELCISRRSFQ 69 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~c--~~l~-~lp~~~------~~~l~~L~~L~l~~~~~~ 69 (205)
+..+++|++|++++|+++. ++..+..+++|++|++++| +.+. .+|.++ +..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 4567899999999998864 4455778999999999996 3333 345542 378899999999999988
Q ss_pred hhhhhhhccccccHHhhcCCCCccEEEEEeeCCe
Q 048752 70 KWEVEVEGAKNASLEELKHLPNLTSLELDIHDVN 103 (205)
Q Consensus 70 ~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 103 (205)
.... ...+..+..+++|+.|++++|.+.
T Consensus 108 ~~~~------~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 108 PTAQ------EPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTTH------HHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHHH------HHHHHHHHhCCCCCEEECcCCCCC
Confidence 6211 001135556666666666666654
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=3e-14 Score=121.64 Aligned_cols=145 Identities=23% Similarity=0.267 Sum_probs=118.0
Q ss_pred CcccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 2 SVIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 2 ~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
+.++.+++|+.|+|++|.++.+|+ +..+++|++|+|++ +.+..+|. +..+++|++|++++|.+..++
T Consensus 59 ~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~--------- 125 (605)
T 1m9s_A 59 QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE-NKIKDLSS--LKDLKKLKSLSLEHNGISDIN--------- 125 (605)
T ss_dssp TTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS-SCCCCCTT--STTCTTCCEEECTTSCCCCCG---------
T ss_pred hHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC-CCCCCChh--hccCCCCCEEEecCCCCCCCc---------
Confidence 457789999999999999999987 99999999999999 57788774 899999999999999998653
Q ss_pred cHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC---CCCCCCcceEEecCcc-cchhhHHHhcCC
Q 048752 82 SLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES---TNIWRSEFRLRLNNKI-CLKDWLIVQLQG 156 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~---~~~~~~L~~L~l~~~~-~~~~~~~~~~~~ 156 (205)
.+..+++|+.|++++|.+..++ .+..+..|+.+ +.++.+.. ...+++|+.|+++.+. .....+. .+++
T Consensus 126 ---~l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~-~l~~ 198 (605)
T 1m9s_A 126 ---GLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA-GLKN 198 (605)
T ss_dssp ---GGGGCTTCSEEECCSSCCCCCG---GGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGT-TCTT
T ss_pred ---cccCCCccCEEECCCCccCCch---hhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChHHc-cCCC
Confidence 5788999999999999998874 44666666666 66655554 2478899999996553 2233455 6899
Q ss_pred ccEEEeccCc
Q 048752 157 IEDLELRKLQ 166 (205)
Q Consensus 157 L~~L~l~~~~ 166 (205)
|+.|++++|.
T Consensus 199 L~~L~L~~N~ 208 (605)
T 1m9s_A 199 LDVLELFSQE 208 (605)
T ss_dssp CSEEECCSEE
T ss_pred CCEEEccCCc
Confidence 9999999986
No 111
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.53 E-value=1.6e-14 Score=106.13 Aligned_cols=126 Identities=17% Similarity=0.249 Sum_probs=96.0
Q ss_pred ceeEeecCCCccccchhhccccccceEeccCCCCCcccChH-HhhcccccceeecCCCccchhhhhhhccccccHHhhcC
Q 048752 10 LEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPN-VLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKH 88 (205)
Q Consensus 10 L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~-~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~ 88 (205)
-+++++++++++.+|..+.. ++++|++++ +.++.+++. .+..+++|++|++++|.++.+++ ..++.
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------~~~~~ 76 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQLTGIEP----------NAFEG 76 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT----------TTTTT
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCC-CcCCccCCccccccCCCCCEEECCCCCCCCcCH----------hHcCC
Confidence 37899999999999987654 999999999 678888763 48899999999999999998866 58899
Q ss_pred CCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccCCCCCCCcceEEecCcccchhhHHHhcCCccEEEeccCc
Q 048752 89 LPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWESTNIWRSEFRLRLNNKICLKDWLIVQLQGIEDLELRKLQ 166 (205)
Q Consensus 89 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 166 (205)
+++|++|++++|.++.+++. .+..++.|+.+ +.++.+.. ..+..+. .+++|+.|++++|.
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~----------------~~~~~~~-~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNK-MFLGLHQLKTLNLYDNQISC----------------VMPGSFE-HLNSLTSLNLASNP 137 (192)
T ss_dssp CTTCCEEECCSCCCCEECSS-SSTTCTTCCEEECCSSCCCE----------------ECTTSST-TCTTCCEEECTTCC
T ss_pred cccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCe----------------eCHHHhh-cCCCCCEEEeCCCC
Confidence 99999999999999998776 45555554444 44333332 1122233 46788888888775
No 112
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=1.7e-14 Score=106.09 Aligned_cols=107 Identities=23% Similarity=0.374 Sum_probs=92.5
Q ss_pred ccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhc
Q 048752 8 KKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELK 87 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~ 87 (205)
.+|++|++++|.++.+|..+..+++|++|++++ +.++.++++.|..+++|++|++++|.++.+++ ..+.
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~----------~~f~ 99 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYNRLRCIPP----------RTFD 99 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT----------TTTT
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCCCccCEeCH----------HHhC
Confidence 579999999999999998899999999999999 78888887779999999999999999999887 6789
Q ss_pred CCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccc
Q 048752 88 HLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYW 126 (205)
Q Consensus 88 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~ 126 (205)
.+++|+.|++++|.++.++.. .+..+..|+.. +.++.+
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 100 GLKSLRLLSLHGNDISVVPEG-AFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEEECCCCCCCeeChh-hhhcCccccEEEeCCCCe
Confidence 999999999999999998876 55656555554 444433
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=2.3e-16 Score=133.75 Aligned_cols=184 Identities=16% Similarity=0.090 Sum_probs=133.8
Q ss_pred ccCcccceeEeecCCCccccchhhccccccceEeccCCC-------------CCcccChHHhhcccccceee-cCCCccc
Q 048752 4 IGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECR-------------KLEVIPPNVLSNLSHLEELC-ISRRSFQ 69 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~-------------~l~~lp~~~~~~l~~L~~L~-l~~~~~~ 69 (205)
+..+++|+.|++++|+++.+|..++.+++|+.|++++|. .....|. .+..+++|+.|+ ++.|.+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~-~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE-TLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH-HHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHH-HHHHHHhcccCcchhhcccc
Confidence 456889999999999999999999999999999997742 2333444 488999999998 6666655
Q ss_pred hhhhh-hhccccccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-CC---CCCCcceEEecCc
Q 048752 70 KWEVE-VEGAKNASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-TN---IWRSEFRLRLNNK 143 (205)
Q Consensus 70 ~~~~~-i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~~---~~~~L~~L~l~~~ 143 (205)
.++.. +.+.. +..+. ...|+.|++++|.++.+|. +..++.|+.+ +.++.+.. |. .+++|++|+++.+
T Consensus 424 ~L~~l~l~~n~---i~~l~-~~~L~~L~Ls~n~l~~lp~---~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 424 DLRSKFLLENS---VLKME-YADVRVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHH---HHHHH-HTTCSEEECTTSCCSSCCC---GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred hhhhhhhhccc---ccccC-ccCceEEEecCCCCCCCcC---ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC
Confidence 54431 11111 11111 1258899999999998874 4667777766 66665554 43 6788899999655
Q ss_pred c-cchhhHHHhcCCccEEEeccCchhhHHhH--HHHhhhcCCCCccEEeecCCCCCCCCCCC
Q 048752 144 I-CLKDWLIVQLQGIEDLELRKLQEQDVIYF--ANELVKVGSSQLKFLRIHGCSDALNPPAE 202 (205)
Q Consensus 144 ~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~~~~~~L~~L~l~~~~~l~~lp~~ 202 (205)
. .....+. .+++|+.|++++|. ++.+ |..+ ..+++|+.|++++|+ ++.+|+.
T Consensus 497 ~l~~lp~l~-~l~~L~~L~Ls~N~---l~~~~~p~~l--~~l~~L~~L~L~~N~-l~~~~~~ 551 (567)
T 1dce_A 497 ALENVDGVA-NLPRLQELLLCNNR---LQQSAAIQPL--VSCPRLVLLNLQGNS-LCQEEGI 551 (567)
T ss_dssp CCCCCGGGT-TCSSCCEEECCSSC---CCSSSTTGGG--GGCTTCCEEECTTSG-GGGSSSC
T ss_pred CCCCCcccC-CCCCCcEEECCCCC---CCCCCCcHHH--hcCCCCCEEEecCCc-CCCCccH
Confidence 3 2222555 68999999999996 6666 7777 689999999999998 7777654
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=5.2e-14 Score=113.03 Aligned_cols=183 Identities=13% Similarity=0.069 Sum_probs=120.5
Q ss_pred CcccceeEeecCCCccccc-----hhhcccc-ccceEeccCCCCCcccChHHhhcc-----cccceeecCCCccchhhhh
Q 048752 6 DLKKLEILCLRGSDIKQLP-----IEVGQLT-WLTLLDLRECRKLEVIPPNVLSNL-----SHLEELCISRRSFQKWEVE 74 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~~lp-----~~i~~l~-~L~~L~l~~c~~l~~lp~~~~~~l-----~~L~~L~l~~~~~~~~~~~ 74 (205)
...+|++|++++|.++..+ ..+..++ +|++|++++ +.++......+..+ ++|++|++++|.+...++.
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG-NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCS-SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcC-CCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 3455999999999998776 4577888 899999999 57777655446665 8999999999998866550
Q ss_pred hhccccccHHhhcCC-CCccEEEEEeeCCeeccCCc---Ccccc-cceEEe-eccccccC--C-------CCC-CCcceE
Q 048752 75 VEGAKNASLEELKHL-PNLTSLELDIHDVNTLPRGL---FLEKL-GKYRIR-IGDWYWES--T-------NIW-RSEFRL 138 (205)
Q Consensus 75 i~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~---~~~~L-~~L~~~-~~~~~~~~--~-------~~~-~~L~~L 138 (205)
.....+..+ ++|++|++++|.++..+... .+..+ +.|+.+ +.++.+.. . ... ++|++|
T Consensus 99 ------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 99 ------ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp ------HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred ------HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 111235555 78999999999887754421 12221 244444 44444332 1 123 489999
Q ss_pred EecCcccc---hhhHHH---hc-CCccEEEeccCchhhHHh-----HHHHhhhcCCCCccEEeecCCCCCCCCC
Q 048752 139 RLNNKICL---KDWLIV---QL-QGIEDLELRKLQEQDVIY-----FANELVKVGSSQLKFLRIHGCSDALNPP 200 (205)
Q Consensus 139 ~l~~~~~~---~~~~~~---~~-~~L~~L~l~~~~~~~~~~-----~~~~l~~~~~~~L~~L~l~~~~~l~~lp 200 (205)
+++.+... ...+.. .. ++|+.|++++|. ++. ++..+. ...++|++|++++|. ++..+
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~---i~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~-l~~~~ 241 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANL---LGLKSYAELAYIFS-SIPNHVVSLNLCLNC-LHGPS 241 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC---GGGSCHHHHHHHHH-HSCTTCCEEECCSSC-CCCCC
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC---CChhHHHHHHHHHh-cCCCCceEEECcCCC-CCcHH
Confidence 99655322 222221 23 589999999886 444 666663 234689999999987 66543
No 115
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=2.2e-14 Score=103.85 Aligned_cols=126 Identities=21% Similarity=0.319 Sum_probs=94.3
Q ss_pred cceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcC
Q 048752 9 KLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKH 88 (205)
Q Consensus 9 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~ 88 (205)
+.+.+++++++++.+|..+. ++|++|++++ +.++.+|...+..+++|++|++++|.++.+++ ..++.
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~~~~~ 74 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD----------GVFDK 74 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT----------TTTTT
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCC-CcccEeCHHHhcCcccccEEECCCCcceEeCh----------hHccC
Confidence 45789999999999997643 7999999999 67888887767899999999999999998877 56789
Q ss_pred CCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccCCCCCCCcceEEecCcccchhh-HHHhcCCccEEEeccCc
Q 048752 89 LPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWESTNIWRSEFRLRLNNKICLKDW-LIVQLQGIEDLELRKLQ 166 (205)
Q Consensus 89 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~ 166 (205)
+++|+.|++++|.++.++.. .+..++.|+.. +.++.+.. .+.. +. .+++|+.|++++|+
T Consensus 75 l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~-----------------~~~~~~~-~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPNG-VFDKLTQLKELALDTNQLKS-----------------VPDGIFD-RLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSC-----------------CCTTTTT-TCTTCCEEECCSSC
T ss_pred CCccCEEECCCCCccccCHH-HhhCCcccCEEECcCCcceE-----------------eCHHHhc-CCcccCEEEecCCC
Confidence 99999999999999888765 44544444443 33333322 1111 22 46788888888776
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.50 E-value=4.8e-14 Score=119.47 Aligned_cols=162 Identities=13% Similarity=0.122 Sum_probs=88.6
Q ss_pred cceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhc---------cc
Q 048752 9 KLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEG---------AK 79 (205)
Q Consensus 9 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~---------~~ 79 (205)
+++.|++++|+++.+|..+. ++|++|++++ +.++.+| + .+++|++|++++|+++.+|. +.+ +.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~-N~l~~ip-~---~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQ-NALISLP-E---LPASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCS-SCCSCCC-C---CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcC-CCCcccc-c---ccCCCCEEEccCCCCCCcch-hhcCCCEEECCCCc
Confidence 56667776666666666542 5666666666 4555666 2 35666666666666665443 111 00
Q ss_pred cccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-CCCCCCcceEEecCccc--chhhHHHhcC
Q 048752 80 NASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-TNIWRSEFRLRLNNKIC--LKDWLIVQLQ 155 (205)
Q Consensus 80 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~~~~~~L~~L~l~~~~~--~~~~~~~~~~ 155 (205)
...+.. .+++|+.|++++|.++.+|. .++.|+.+ +.++.+.. |.-.++|+.|+++.+.. .+. +. .
T Consensus 132 l~~lp~--~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~~lp~-~~---~ 200 (571)
T 3cvr_A 132 LTMLPE--LPALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPA-VP---V 200 (571)
T ss_dssp CSCCCC--CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-CC----
T ss_pred CCCCCC--cCccccEEeCCCCccCcCCC-----cCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCCchhh-HH---H
Confidence 000001 45666677777766666554 12333333 34444433 33225677777744421 111 11 2
Q ss_pred Cc-------cEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCC
Q 048752 156 GI-------EDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 156 ~L-------~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 194 (205)
+| +.|++++|. ++.+|..+. .+++|+.|++++|+
T Consensus 201 ~L~~~~~~L~~L~Ls~N~---l~~lp~~l~--~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENR---ITHIPENIL--SLDPTCTIILEDNP 241 (571)
T ss_dssp -------CCEEEECCSSC---CCCCCGGGG--GSCTTEEEECCSSS
T ss_pred hhhcccccceEEecCCCc---ceecCHHHh--cCCCCCEEEeeCCc
Confidence 45 778887775 667777663 57888888888877
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=3.4e-14 Score=120.38 Aligned_cols=136 Identities=18% Similarity=0.175 Sum_probs=76.1
Q ss_pred ccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcCCCCccEEEEEeeCCeeccCCcCc
Q 048752 32 WLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDVNTLPRGLFL 111 (205)
Q Consensus 32 ~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 111 (205)
++++|++++ +.++.+|.. + .++|++|++++|.++.+|. .+++|+.|++++|.++.+|. +
T Consensus 60 ~L~~L~Ls~-n~L~~lp~~-l--~~~L~~L~Ls~N~l~~ip~--------------~l~~L~~L~Ls~N~l~~ip~-l-- 118 (571)
T 3cvr_A 60 QFSELQLNR-LNLSSLPDN-L--PPQITVLEITQNALISLPE--------------LPASLEYLDACDNRLSTLPE-L-- 118 (571)
T ss_dssp TCSEEECCS-SCCSCCCSC-C--CTTCSEEECCSSCCSCCCC--------------CCTTCCEEECCSSCCSCCCC-C--
T ss_pred CccEEEeCC-CCCCccCHh-H--cCCCCEEECcCCCCccccc--------------ccCCCCEEEccCCCCCCcch-h--
Confidence 899999999 578889986 3 4789999999999986652 35667777777776666654 2
Q ss_pred ccccceEEe-eccccccC-CCCCCCcceEEecCcccchhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEe
Q 048752 112 EKLGKYRIR-IGDWYWES-TNIWRSEFRLRLNNKICLKDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLR 189 (205)
Q Consensus 112 ~~L~~L~~~-~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~ 189 (205)
.+ .|+.+ +.++.+.. |..+++|++|+++.+.... +...+++|+.|++++|. ++.+|. + . ++|+.|+
T Consensus 119 ~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~--lp~~l~~L~~L~Ls~N~---L~~lp~-l---~-~~L~~L~ 186 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQLTMLPELPALLEYINADNNQLTM--LPELPTSLEVLSVRNNQ---LTFLPE-L---P-ESLEALD 186 (571)
T ss_dssp CT--TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC--CCCCCTTCCEEECCSSC---CSCCCC-C---C-TTCCEEE
T ss_pred hc--CCCEEECCCCcCCCCCCcCccccEEeCCCCccCc--CCCcCCCcCEEECCCCC---CCCcch-h---h-CCCCEEE
Confidence 21 23333 33333333 2244555555553332110 11123455555555553 333443 2 1 4444555
Q ss_pred ecCCCCCCCCCC
Q 048752 190 IHGCSDALNPPA 201 (205)
Q Consensus 190 l~~~~~l~~lp~ 201 (205)
+++|. ++.+|.
T Consensus 187 Ls~N~-L~~lp~ 197 (571)
T 3cvr_A 187 VSTNL-LESLPA 197 (571)
T ss_dssp CCSSC-CSSCCC
T ss_pred CcCCC-CCchhh
Confidence 54443 444443
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=1.2e-14 Score=126.53 Aligned_cols=70 Identities=24% Similarity=0.313 Sum_probs=32.4
Q ss_pred hhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcCCCCccEEEEEeeCCee
Q 048752 25 IEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDVNT 104 (205)
Q Consensus 25 ~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 104 (205)
..+..+.+|++|+|++ +.+..+|.+ +..+++|++|++++|.++.+|. .++.+++|+.|++++|.++.
T Consensus 218 ~~~~~l~~L~~L~Ls~-n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~-----------~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSN-LQIFNISAN-IFKYDFLTRLYLNGNSLTELPA-----------EIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp ----CCCCCCEEECTT-SCCSCCCGG-GGGCCSCSCCBCTTSCCSCCCG-----------GGGGGTTCCEEECTTSCCSS
T ss_pred hhhccCCCCcEEECCC-CCCCCCChh-hcCCCCCCEEEeeCCcCcccCh-----------hhhCCCCCCEEeCcCCcCCc
Confidence 3344455555555555 334445544 3345555555555555544443 44455555555555555544
Q ss_pred ccC
Q 048752 105 LPR 107 (205)
Q Consensus 105 ~~~ 107 (205)
+|.
T Consensus 285 lp~ 287 (727)
T 4b8c_D 285 LPA 287 (727)
T ss_dssp CCS
T ss_pred cCh
Confidence 433
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.44 E-value=2e-13 Score=98.70 Aligned_cols=108 Identities=23% Similarity=0.411 Sum_probs=90.0
Q ss_pred cccceeEeecCCCccccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHh
Q 048752 7 LKKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEE 85 (205)
Q Consensus 7 l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~ 85 (205)
.++|++|++++|+++.+|.. ++.+++|++|++++ +.++.+|+..+..+++|++|++++|.++.+++ ..
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----------~~ 95 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLTILYLHENKLQSLPN----------GV 95 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------TT
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCC-CcceEeChhHccCCCccCEEECCCCCccccCH----------HH
Confidence 46899999999999998876 78999999999999 68888988767899999999999999998887 56
Q ss_pred hcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccc
Q 048752 86 LKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYW 126 (205)
Q Consensus 86 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~ 126 (205)
+..+++|+.|++++|.++.++.. .+..++.|+.. +.++.+
T Consensus 96 ~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLKSVPDG-IFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCB
T ss_pred hhCCcccCEEECcCCcceEeCHH-HhcCCcccCEEEecCCCe
Confidence 78999999999999999988876 44555554444 444433
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.44 E-value=1.7e-13 Score=100.59 Aligned_cols=107 Identities=21% Similarity=0.336 Sum_probs=89.6
Q ss_pred cceeEeecCCCccccchh--hccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh
Q 048752 9 KLEILCLRGSDIKQLPIE--VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL 86 (205)
Q Consensus 9 ~L~~L~l~~~~i~~lp~~--i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l 86 (205)
++++|++++|+++.++.. ++.+++|++|++++ +.++.++++.+..+++|++|++++|+++.+++ ..+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------~~~ 98 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQELQLGENKIKEISN----------KMF 98 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSCCCCEECS----------SSS
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCC-CCCCCcCHhHcCCcccCCEEECCCCcCCccCH----------HHh
Confidence 899999999999998864 89999999999999 67887755559999999999999999998887 568
Q ss_pred cCCCCccEEEEEeeCCeeccCCcCcccccceEEe-ecccccc
Q 048752 87 KHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWE 127 (205)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~ 127 (205)
..+++|+.|++++|.++.+++. .+..+..|+.. +.++.+.
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBC
T ss_pred cCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCcc
Confidence 8999999999999999988665 55666665555 5554444
No 121
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=4.3e-13 Score=96.59 Aligned_cols=105 Identities=19% Similarity=0.350 Sum_probs=85.7
Q ss_pred cceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcC
Q 048752 9 KLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKH 88 (205)
Q Consensus 9 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~ 88 (205)
..+.+++++++++.+|..+. ++|++|++++ +.++.++++.+..+++|++|++++|+++.+++ ..+..
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~----------~~f~~ 76 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYD-NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA----------GVFDK 76 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT----------TTTTT
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCC-CcCCccChhhhcCcccCCEEECCCCCcCccCh----------hhccC
Confidence 46789999999999998764 8999999999 78888866668899999999999999998887 56789
Q ss_pred CCCccEEEEEeeCCeeccCCcCcccccceEEe-ecccccc
Q 048752 89 LPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWE 127 (205)
Q Consensus 89 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~ 127 (205)
+++|+.|++++|.++.+++. .+..+..|+.+ +.++.+.
T Consensus 77 l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 77 LTQLTQLSLNDNQLKSIPRG-AFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCBC
T ss_pred CCCCCEEECCCCccCEeCHH-HhcCCCCCCEEEeCCCCCC
Confidence 99999999999999998876 55666666555 5555443
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.40 E-value=3.8e-13 Score=96.39 Aligned_cols=104 Identities=24% Similarity=0.287 Sum_probs=85.8
Q ss_pred ccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcc-cChHHhhcccccceeecCCCccchhhhhhhcccccc
Q 048752 4 IGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEV-IPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNAS 82 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~-lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~ 82 (205)
+..+++|++|++++|.++.+ ..++.+++|++|++++ +.+.. +|.. +..+++|++|++++|.++.++.
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~-N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~--------- 112 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSE-NRIFGGLDML-AEKLPNLTHLNLSGNKLKDIST--------- 112 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEES-CCCCSCCCHH-HHHCTTCCEEECBSSSCCSSGG---------
T ss_pred HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcC-CcCchHHHHH-HhhCCCCCEEeccCCccCcchh---------
Confidence 47889999999999999888 6699999999999999 56666 6654 7789999999999999998763
Q ss_pred HHhhcCCCCccEEEEEeeCCeeccC---CcCcccccceEEe
Q 048752 83 LEELKHLPNLTSLELDIHDVNTLPR---GLFLEKLGKYRIR 120 (205)
Q Consensus 83 ~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~~~ 120 (205)
+..+..+++|+.|++++|.++.++. . .+..++.|+..
T Consensus 113 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~-~~~~l~~L~~L 152 (168)
T 2ell_A 113 LEPLKKLECLKSLDLFNCEVTNLNDYRES-VFKLLPQLTYL 152 (168)
T ss_dssp GGGGSSCSCCCEEECCSSGGGTSTTHHHH-HHTTCSSCCEE
T ss_pred HHHHhcCCCCCEEEeeCCcCcchHHHHHH-HHHhCccCcEe
Confidence 2478899999999999999988876 2 33555555554
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=8.6e-13 Score=111.92 Aligned_cols=104 Identities=24% Similarity=0.284 Sum_probs=81.7
Q ss_pred cceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcC
Q 048752 9 KLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKH 88 (205)
Q Consensus 9 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~ 88 (205)
.|++|++++|.++.+|. ++.+++|++|++++ +.++.+|.. +..+++|++|++++|.++.+| .++.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp------------~l~~ 506 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSH-NRLRALPPA-LAALRCLEVLQASDNALENVD------------GVAN 506 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCS-SCCCCCCGG-GGGCTTCCEEECCSSCCCCCG------------GGTT
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCc-ccccccchh-hhcCCCCCEEECCCCCCCCCc------------ccCC
Confidence 47889999999988887 88999999999998 677788886 889999999999999888654 4788
Q ss_pred CCCccEEEEEeeCCeecc-CCcCcccccceEEe-eccccccC
Q 048752 89 LPNLTSLELDIHDVNTLP-RGLFLEKLGKYRIR-IGDWYWES 128 (205)
Q Consensus 89 l~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~~~-~~~~~~~~ 128 (205)
+++|+.|++++|.++.++ +. .+..++.|+.+ +.++.+.+
T Consensus 507 l~~L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 507 LPRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CSSCCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTSGGGG
T ss_pred CCCCcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCCcCCC
Confidence 899999999999888874 33 44666665555 55554444
No 124
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.39 E-value=2.4e-13 Score=112.04 Aligned_cols=62 Identities=16% Similarity=0.052 Sum_probs=37.9
Q ss_pred CCCCcceEEecCcccch---hhHHHh----cCCccEEEeccCchh--hHHhHHHHhhhcCCCCccEEeecCCC
Q 048752 131 IWRSEFRLRLNNKICLK---DWLIVQ----LQGIEDLELRKLQEQ--DVIYFANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 131 ~~~~L~~L~l~~~~~~~---~~~~~~----~~~L~~L~l~~~~~~--~~~~~~~~l~~~~~~~L~~L~l~~~~ 194 (205)
.+++|++|+++.+.... ..+... .++|+.|++++|... ....+|..+ ..+++|++|++++|+
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l--~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL--LANHSLRELDLSNNC 409 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH--HHCCCCCEEECCSSS
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH--HhCCCccEEECCCCC
Confidence 35677888886553322 122221 458888888888610 011566666 467888888888886
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=5.2e-13 Score=93.78 Aligned_cols=93 Identities=23% Similarity=0.350 Sum_probs=80.4
Q ss_pred cccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcc-cChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEV-IPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~-lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
.++.+++|++|++++|.++.+ ..++.+++|++|++++ +.+.. +|. .+..+++|++|++++|.+..++.
T Consensus 37 ~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~-n~i~~~~~~-~~~~l~~L~~L~ls~N~i~~~~~-------- 105 (149)
T 2je0_A 37 LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD-NRVSGGLEV-LAEKCPNLTHLNLSGNKIKDLST-------- 105 (149)
T ss_dssp CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCS-SCCCSCTHH-HHHHCTTCCEEECTTSCCCSHHH--------
T ss_pred HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCC-CcccchHHH-HhhhCCCCCEEECCCCcCCChHH--------
Confidence 357889999999999999888 6699999999999999 56776 555 47889999999999999998753
Q ss_pred cHHhhcCCCCccEEEEEeeCCeeccC
Q 048752 82 SLEELKHLPNLTSLELDIHDVNTLPR 107 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~~~~ 107 (205)
+..++.+++|+.|++++|.++..+.
T Consensus 106 -~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 106 -IEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp -HGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred -HHHHhhCCCCCEEeCcCCcccchHH
Confidence 2478999999999999999988776
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=1.3e-13 Score=120.09 Aligned_cols=133 Identities=14% Similarity=0.045 Sum_probs=61.3
Q ss_pred hhcccccceeecCCCccchhhhhhhccccccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-eccccccC-C
Q 048752 52 LSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWES-T 129 (205)
Q Consensus 52 ~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~~-~ 129 (205)
+..+.+|++|++++|.+..++. .+..+++|+.|++++|.++.+|.. +.++..|+.+ +.++.+.. |
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~-----------~~~~l~~L~~L~Ls~N~l~~lp~~--~~~l~~L~~L~Ls~N~l~~lp 286 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISA-----------NIFKYDFLTRLYLNGNSLTELPAE--IKNLSNLRVLDLSHNRLTSLP 286 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCG-----------GGGGCCSCSCCBCTTSCCSCCCGG--GGGGTTCCEEECTTSCCSSCC
T ss_pred hccCCCCcEEECCCCCCCCCCh-----------hhcCCCCCCEEEeeCCcCcccChh--hhCCCCCCEEeCcCCcCCccC
Confidence 5555555555555555554444 334455555555555555544432 2444444443 33333322 2
Q ss_pred C---CCCCcceEEecCcc--cchhhHHHhcCCccEEEeccCchhhHHhHHHHhhhcCC-CCccEEeecCCCCCCCCCCC
Q 048752 130 N---IWRSEFRLRLNNKI--CLKDWLIVQLQGIEDLELRKLQEQDVIYFANELVKVGS-SQLKFLRIHGCSDALNPPAE 202 (205)
Q Consensus 130 ~---~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~-~~L~~L~l~~~~~l~~lp~~ 202 (205)
. .+++|++|+++.+. ..+..++ .+++|+.|++++|. ....+|..+. .+ ..+..+++++|..-..+|..
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~~lp~~~~-~l~~L~~L~L~~N~--l~~~~p~~~~--~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVTTLPWEFG-NLCNLQFLGVEGNP--LEKQFLKILT--EKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCCCCCSSTT-SCTTCCCEECTTSC--CCSHHHHHHH--HHHHHHHHHHHHHCCCCCCCCCC
T ss_pred hhhcCCCCCCEEECCCCCCCccChhhh-cCCCccEEeCCCCc--cCCCChHHHh--hcchhhhHHhhccCcccCcCccc
Confidence 1 22333333332221 1122233 46778888888776 3334454442 22 12234567777654555544
No 127
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=6.7e-13 Score=95.97 Aligned_cols=104 Identities=18% Similarity=0.341 Sum_probs=82.4
Q ss_pred ceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcCC
Q 048752 10 LEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHL 89 (205)
Q Consensus 10 L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l 89 (205)
-+.+++++++++.+|..+. ++|++|++++ +.++.++++.+..+++|++|++++|+++.+++ ..+..+
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----------~~~~~l 80 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNN-NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT----------GVFDKL 80 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------TTTTTC
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCC-CCccccCHHHhcCCcCCCEEECCCCCCCccCh----------hHhCCc
Confidence 3678899999999998765 8899999998 67888866558899999999999999998887 456889
Q ss_pred CCccEEEEEeeCCeeccCCcCcccccceEEe-ecccccc
Q 048752 90 PNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWE 127 (205)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~ 127 (205)
++|+.|++++|.++.+++. .+..+..|+.+ +.++.+.
T Consensus 81 ~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 81 TQLTQLDLNDNHLKSIPRG-AFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCCEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCBC
T ss_pred chhhEEECCCCccceeCHH-HhccccCCCEEEeCCCCcc
Confidence 9999999999999888876 45666665555 5554443
No 128
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.38 E-value=2.5e-13 Score=111.87 Aligned_cols=92 Identities=18% Similarity=0.246 Sum_probs=50.9
Q ss_pred cCcccceeEeecCCCcc-----ccchhhccccccceEeccCCCCCccc-ChHHhhccc----ccceeecCCCccchhhhh
Q 048752 5 GDLKKLEILCLRGSDIK-----QLPIEVGQLTWLTLLDLRECRKLEVI-PPNVLSNLS----HLEELCISRRSFQKWEVE 74 (205)
Q Consensus 5 ~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~c~~l~~l-p~~~~~~l~----~L~~L~l~~~~~~~~~~~ 74 (205)
..+++|++|++++|+++ .++..+..+++|++|++++ +.+... +..++..++ +|++|++++|.+.....
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~- 102 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS-NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC- 102 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTT-CCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH-
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCC-CcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH-
Confidence 34566777777777665 3455566667777777776 344432 222233344 47777776666653220
Q ss_pred hhccccccHHhhcCCCCccEEEEEeeCCe
Q 048752 75 VEGAKNASLEELKHLPNLTSLELDIHDVN 103 (205)
Q Consensus 75 i~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 103 (205)
......+..+++|++|++++|.++
T Consensus 103 -----~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 103 -----GVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp -----HHHHHHTTSCTTCCEEECCSSBCH
T ss_pred -----HHHHHHHccCCceeEEECCCCcCc
Confidence 011135566666666666666554
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=9.1e-14 Score=102.43 Aligned_cols=140 Identities=25% Similarity=0.238 Sum_probs=98.8
Q ss_pred ceeEeecCC--CccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhc
Q 048752 10 LEILCLRGS--DIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELK 87 (205)
Q Consensus 10 L~~L~l~~~--~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~ 87 (205)
++...++++ .++.+|..++.+++|++|++++ +.++.+| . +..+++|++|++++|.+..+|. .+.
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~-n~l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~-----------~~~ 90 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALST-NNIEKIS-S-LSGMENLRILSLGRNLIKKIEN-----------LDA 90 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSE-EEESCCC-C-HHHHTTCCEEEEEEEEECSCSS-----------HHH
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCC-CCCcccc-c-cccCCCCCEEECCCCCcccccc-----------hhh
Confidence 344444443 4566666899999999999999 5778888 4 8999999999999999987776 566
Q ss_pred CCCCccEEEEEeeCCeeccCCcCcccccceEEeeccccccCCCCCCCcceEEecCcccc--h--hhHHHhcCCccEEEec
Q 048752 88 HLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIRIGDWYWESTNIWRSEFRLRLNNKICL--K--DWLIVQLQGIEDLELR 163 (205)
Q Consensus 88 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~--~~~~~~~~~L~~L~l~ 163 (205)
.+++|+.|++++|.++.++. +..++. |++|+++.+... + ..+. .+++|++|+++
T Consensus 91 ~~~~L~~L~L~~N~l~~l~~---~~~l~~------------------L~~L~l~~N~i~~~~~~~~l~-~l~~L~~L~l~ 148 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLSG---IEKLVN------------------LRVLYMSNNKITNWGEIDKLA-ALDKLEDLLLA 148 (198)
T ss_dssp HHHHCSEEEEEEEECCCHHH---HHHHHH------------------SSEEEESEEECCCHHHHHHHT-TTTTCSEEEEC
T ss_pred cCCcCCEEECcCCcCCcCCc---cccCCC------------------CCEEECCCCcCCchhHHHHHh-cCCCCCEEEec
Confidence 67889999999999988762 243333 444444322211 1 2344 58899999999
Q ss_pred cCchhhHHhHHH---------H-hhhcCCCCccEEe
Q 048752 164 KLQEQDVIYFAN---------E-LVKVGSSQLKFLR 189 (205)
Q Consensus 164 ~~~~~~~~~~~~---------~-l~~~~~~~L~~L~ 189 (205)
+|. .....|. . + ..+++|++|+
T Consensus 149 ~N~--l~~~~~~~~~~~~~~~~~~--~~l~~L~~Ld 180 (198)
T 1ds9_A 149 GNP--LYNDYKENNATSEYRIEVV--KRLPNLKKLD 180 (198)
T ss_dssp SCH--HHHHHHTTTTHHHHHHHHH--HHCSSCSEEC
T ss_pred CCc--cccccccccchHHHHHHHH--HhCCCcEEEC
Confidence 986 3232232 1 3 5889999997
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=8.3e-13 Score=95.44 Aligned_cols=94 Identities=20% Similarity=0.234 Sum_probs=81.4
Q ss_pred cccCcc-cceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 3 VIGDLK-KLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 3 ~i~~l~-~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
.+..+. +|++|++++|.++.+ ..++.+++|++|++++ +.++.+|++.+..+++|++|++++|.+..++.
T Consensus 36 ~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-------- 105 (176)
T 1a9n_A 36 NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNN-NRICRIGEGLDQALPDLTELILTNNSLVELGD-------- 105 (176)
T ss_dssp CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCS-SCCCEECSCHHHHCTTCCEEECCSCCCCCGGG--------
T ss_pred HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCC-CcccccCcchhhcCCCCCEEECCCCcCCcchh--------
Confidence 345555 999999999999988 5699999999999999 68889998756999999999999999987775
Q ss_pred cHHhhcCCCCccEEEEEeeCCeeccC
Q 048752 82 SLEELKHLPNLTSLELDIHDVNTLPR 107 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~~~~ 107 (205)
...++.+++|+.|++++|.++.++.
T Consensus 106 -~~~l~~l~~L~~L~l~~N~i~~~~~ 130 (176)
T 1a9n_A 106 -LDPLASLKSLTYLCILRNPVTNKKH 130 (176)
T ss_dssp -GGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred -hHhhhcCCCCCEEEecCCCCCCcHh
Confidence 2468899999999999999987765
No 131
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=1.1e-12 Score=94.86 Aligned_cols=90 Identities=22% Similarity=0.263 Sum_probs=81.0
Q ss_pred ccceeEeecCCCccccc-hhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhh
Q 048752 8 KKLEILCLRGSDIKQLP-IEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEEL 86 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l 86 (205)
++|++|++++|.++.++ ..+..+++|++|++++ +.++.+|.+++..+++|++|++++|++..+++ ..+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~----------~~~ 101 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR----------GAF 101 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------TTT
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCCCccceeCH----------HHh
Confidence 78999999999999885 4599999999999999 78999998867899999999999999999887 568
Q ss_pred cCCCCccEEEEEeeCCeeccCC
Q 048752 87 KHLPNLTSLELDIHDVNTLPRG 108 (205)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~ 108 (205)
..+++|+.|++++|.+...+..
T Consensus 102 ~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp TTCTTCSEEECCSSCBCTTBGG
T ss_pred ccccCCCEEEeCCCCccccccc
Confidence 9999999999999998876653
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=1.4e-12 Score=93.86 Aligned_cols=90 Identities=24% Similarity=0.318 Sum_probs=80.6
Q ss_pred cccceeEeecCCCccccc-hhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHh
Q 048752 7 LKKLEILCLRGSDIKQLP-IEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEE 85 (205)
Q Consensus 7 l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~ 85 (205)
.++|++|++++|+|+.++ ..+..+++|++|++++ +.++.+|++.+..+++|++|++++|+++.+++ ..
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~----------~~ 97 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR----------GA 97 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------TT
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCCCccCEeCH----------HH
Confidence 378999999999999885 4599999999999999 78999998877999999999999999999887 56
Q ss_pred hcCCCCccEEEEEeeCCeeccC
Q 048752 86 LKHLPNLTSLELDIHDVNTLPR 107 (205)
Q Consensus 86 l~~l~~L~~L~l~~~~~~~~~~ 107 (205)
+..+++|+.|++++|.+.....
T Consensus 98 ~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 98 FDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp TTTCTTCCEEECCSSCBCTTBG
T ss_pred hcCCCCCCEEEeCCCCCCCCch
Confidence 8999999999999998876554
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.31 E-value=2.8e-12 Score=102.92 Aligned_cols=170 Identities=19% Similarity=0.071 Sum_probs=115.3
Q ss_pred eEeecCCCccccchh-hccccccceEeccCCCCCcccCh----HHhhccc-ccceeecCCCccchhhhhhhccccccHHh
Q 048752 12 ILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPP----NVLSNLS-HLEELCISRRSFQKWEVEVEGAKNASLEE 85 (205)
Q Consensus 12 ~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~----~~~~~l~-~L~~L~l~~~~~~~~~~~i~~~~~~~~~~ 85 (205)
++++++++++...+. +....+|++|++++ +.++..+. +.+..++ +|++|++++|.+..... ..
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~----------~~ 70 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSL-NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS----------DE 70 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTT-SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH----------HH
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccC-CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH----------HH
Confidence 467889999755444 56666699999999 56888886 5588888 89999999999987654 33
Q ss_pred hcC----C-CCccEEEEEeeCCeeccCCc---Ccccc-cceEEe-eccccccC-C-C-------C-CCCcceEEecCccc
Q 048752 86 LKH----L-PNLTSLELDIHDVNTLPRGL---FLEKL-GKYRIR-IGDWYWES-T-N-------I-WRSEFRLRLNNKIC 145 (205)
Q Consensus 86 l~~----l-~~L~~L~l~~~~~~~~~~~~---~~~~L-~~L~~~-~~~~~~~~-~-~-------~-~~~L~~L~l~~~~~ 145 (205)
+.. . ++|++|++++|.++...... .+... +.|+.+ +.++.+.. + . . ..+|++|+++.+..
T Consensus 71 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 71 LVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred HHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 433 3 89999999999987654331 12222 444444 45544433 1 1 2 36999999966543
Q ss_pred ch---hhHHH---hc-CCccEEEeccCchhhHHhH-H----HHhhhcCC-CCccEEeecCCCCCCC
Q 048752 146 LK---DWLIV---QL-QGIEDLELRKLQEQDVIYF-A----NELVKVGS-SQLKFLRIHGCSDALN 198 (205)
Q Consensus 146 ~~---~~~~~---~~-~~L~~L~l~~~~~~~~~~~-~----~~l~~~~~-~~L~~L~l~~~~~l~~ 198 (205)
.. ..+.. .+ ++|++|++++|. ++.. + ..+ ..+ ++|++|++++|. ++.
T Consensus 151 ~~~~~~~l~~~l~~~~~~L~~L~Ls~n~---l~~~~~~~l~~~l--~~~~~~L~~L~Ls~N~-i~~ 210 (362)
T 3goz_A 151 GIKSSDELIQILAAIPANVNSLNLRGNN---LASKNCAELAKFL--ASIPASVTSLDLSANL-LGL 210 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSC---GGGSCHHHHHHHH--HTSCTTCCEEECTTSC-GGG
T ss_pred CHHHHHHHHHHHhcCCccccEeeecCCC---CchhhHHHHHHHH--HhCCCCCCEEECCCCC-CCh
Confidence 32 12211 23 499999999997 3332 2 233 355 599999999997 654
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=6.7e-12 Score=99.40 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=50.7
Q ss_pred cccceeEeecCCCcc--------------------ccchh-hcc--------ccccceEeccCCCCCcccChHHhhcccc
Q 048752 7 LKKLEILCLRGSDIK--------------------QLPIE-VGQ--------LTWLTLLDLRECRKLEVIPPNVLSNLSH 57 (205)
Q Consensus 7 l~~L~~L~l~~~~i~--------------------~lp~~-i~~--------l~~L~~L~l~~c~~l~~lp~~~~~~l~~ 57 (205)
+++|++|||++|++. .+|+. +.+ +++|+.+++.+ .++.++++.|..+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence 677999999998877 45544 667 89999999987 678888888889999
Q ss_pred cceeecCCCccchhhh
Q 048752 58 LEELCISRRSFQKWEV 73 (205)
Q Consensus 58 L~~L~l~~~~~~~~~~ 73 (205)
|+.+++..|.+..+++
T Consensus 126 L~~l~l~~n~i~~i~~ 141 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLP 141 (329)
T ss_dssp CCEEEBCCSSCCEECT
T ss_pred cceEEcCCCCccccch
Confidence 9999998887654444
No 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=1.9e-11 Score=97.28 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=59.3
Q ss_pred eEeecCC-CccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcCCC
Q 048752 12 ILCLRGS-DIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLP 90 (205)
Q Consensus 12 ~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~ 90 (205)
.++.+++ +++.+|. ++.+++|++|+|++++.++.+|++.|..|++|++|++++|++..+++ ..++.++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----------~~~~~l~ 80 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP----------DAFHFTP 80 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT----------TGGGSCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH----------HHhcCCc
Confidence 4466666 6777777 77777777777765456677765556777777777777777776665 4566777
Q ss_pred CccEEEEEeeCCeeccCC
Q 048752 91 NLTSLELDIHDVNTLPRG 108 (205)
Q Consensus 91 ~L~~L~l~~~~~~~~~~~ 108 (205)
+|+.|++++|.++.+++.
T Consensus 81 ~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 81 RLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CCCEEECCSSCCSCCCST
T ss_pred CCCEEeCCCCccceeCHH
Confidence 777777777777776655
No 136
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.22 E-value=7.9e-11 Score=99.86 Aligned_cols=81 Identities=15% Similarity=0.105 Sum_probs=39.2
Q ss_pred CcccceeEeecCCCccc-----cchhhccccccceEeccCCCCCc-----ccChHHhhcccccceeecCCCccchhhhhh
Q 048752 6 DLKKLEILCLRGSDIKQ-----LPIEVGQLTWLTLLDLRECRKLE-----VIPPNVLSNLSHLEELCISRRSFQKWEVEV 75 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~c~~l~-----~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i 75 (205)
++++|++|++++|.++. ++.....+++|++|++++| .+. .++. .+..+++|++|++++|.+..++.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~l~~-- 237 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLET-IARNCRSLVSVKVGDFEILELVG-- 237 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGGGHH--
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHH-HHhhCCCCcEEeccCccHHHHHH--
Confidence 34555555555554422 2222334555555555552 232 2222 24455566666666555554443
Q ss_pred hccccccHHhhcCCCCccEEEEEe
Q 048752 76 EGAKNASLEELKHLPNLTSLELDI 99 (205)
Q Consensus 76 ~~~~~~~~~~l~~l~~L~~L~l~~ 99 (205)
.+..+++|+.|.++.
T Consensus 238 ---------~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 238 ---------FFKAAANLEEFCGGS 252 (592)
T ss_dssp ---------HHHHCTTCCEEEECB
T ss_pred ---------HHhhhhHHHhhcccc
Confidence 455556666665553
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=1.6e-13 Score=101.03 Aligned_cols=90 Identities=21% Similarity=0.278 Sum_probs=78.7
Q ss_pred cccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhcccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNAS 82 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~ 82 (205)
.++++++|++|++++|.++.+| .+..+++|++|++++ +.++.+|.. +..+++|++|++++|.+..++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~-n~l~~l~~~-~~~~~~L~~L~L~~N~l~~l~---------- 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGR-NLIKKIENL-DAVADTLEELWISYNQIASLS---------- 109 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEE-EEECSCSSH-HHHHHHCSEEEEEEEECCCHH----------
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCC-CCcccccch-hhcCCcCCEEECcCCcCCcCC----------
Confidence 4667899999999999999999 899999999999999 578889975 788999999999999998754
Q ss_pred HHhhcCCCCccEEEEEeeCCeeccC
Q 048752 83 LEELKHLPNLTSLELDIHDVNTLPR 107 (205)
Q Consensus 83 ~~~l~~l~~L~~L~l~~~~~~~~~~ 107 (205)
.++.+++|+.|++++|.++.++.
T Consensus 110 --~~~~l~~L~~L~l~~N~i~~~~~ 132 (198)
T 1ds9_A 110 --GIEKLVNLRVLYMSNNKITNWGE 132 (198)
T ss_dssp --HHHHHHHSSEEEESEEECCCHHH
T ss_pred --ccccCCCCCEEECCCCcCCchhH
Confidence 46678899999999999887654
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=2.7e-11 Score=96.45 Aligned_cols=91 Identities=16% Similarity=0.254 Sum_probs=78.9
Q ss_pred cccCcccceeEeecC-CCccccch-hhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhcccc
Q 048752 3 VIGDLKKLEILCLRG-SDIKQLPI-EVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKN 80 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~ 80 (205)
.|..+.+|+.|+|++ |.++.+|. .++.|++|++|+|++ |.++.++++.|..|++|++|++++|++..+++
T Consensus 26 ~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------- 97 (347)
T 2ifg_A 26 HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSFNALESLSW------- 97 (347)
T ss_dssp TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCSSCCSCCCS-------
T ss_pred CCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCCCccceeCH-------
Confidence 367788999999996 99999985 599999999999999 68898888778999999999999999999887
Q ss_pred ccHHhhcCCCCccEEEEEeeCCeec
Q 048752 81 ASLEELKHLPNLTSLELDIHDVNTL 105 (205)
Q Consensus 81 ~~~~~l~~l~~L~~L~l~~~~~~~~ 105 (205)
..+..++ |+.|++.+|.+...
T Consensus 98 ---~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 98 ---KTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp ---TTTCSCC-CCEEECCSSCCCCC
T ss_pred ---HHcccCC-ceEEEeeCCCccCC
Confidence 4455555 99999999988653
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.15 E-value=5.3e-11 Score=100.92 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=34.4
Q ss_pred CcccceeEeecCCCcc-----ccchhhccccccceEeccCCCCCcccChHHhhcccccceeecC
Q 048752 6 DLKKLEILCLRGSDIK-----QLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCIS 64 (205)
Q Consensus 6 ~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~ 64 (205)
.+++|++|++++|.++ .++..+..+++|++|++++| .+..+|.. +..+++|++|+++
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~-~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGF-FKAAANLEEFCGG 251 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHH-HHHCTTCCEEEEC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHH-HhhhhHHHhhccc
Confidence 4567777777777664 34444556677777777773 34445543 5556666666654
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.09 E-value=9.8e-11 Score=94.40 Aligned_cols=91 Identities=19% Similarity=0.218 Sum_probs=60.7
Q ss_pred cccceeEeecCCCccccch-hhcc-----ccccceEeccCCCCCccc-ChHHhhcccccceeecCCCccchhhhhhhccc
Q 048752 7 LKKLEILCLRGSDIKQLPI-EVGQ-----LTWLTLLDLRECRKLEVI-PPNVLSNLSHLEELCISRRSFQKWEVEVEGAK 79 (205)
Q Consensus 7 l~~L~~L~l~~~~i~~lp~-~i~~-----l~~L~~L~l~~c~~l~~l-p~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~ 79 (205)
+++|+.|++++|.++.... .+.. .++|++|++++| .+... ...+...+++|++|++++|.+...+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~----- 144 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK----- 144 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH-----
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH-----
Confidence 3578899999998864322 1322 378999999995 45432 223345577899999999988765540
Q ss_pred cccHHhh-cCCCCccEEEEEeeCCee
Q 048752 80 NASLEEL-KHLPNLTSLELDIHDVNT 104 (205)
Q Consensus 80 ~~~~~~l-~~l~~L~~L~l~~~~~~~ 104 (205)
...+.+ ...++|++|++++|.++.
T Consensus 145 -~L~~~L~~~~~~L~~L~Ls~n~l~~ 169 (372)
T 3un9_A 145 -DLRDLLLHDQCQITTLRLSNNPLTA 169 (372)
T ss_dssp -HHHHHHHSTTCCCCEEECCSSCCHH
T ss_pred -HHHHHHHhcCCccceeeCCCCCCCh
Confidence 011223 356789999999998765
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.05 E-value=2.3e-10 Score=96.98 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=35.2
Q ss_pred CcccceeEeecCC-Cccc--cchhhccccccceEeccCCCCCcccChHH----hhcccccceeecCCCc
Q 048752 6 DLKKLEILCLRGS-DIKQ--LPIEVGQLTWLTLLDLRECRKLEVIPPNV----LSNLSHLEELCISRRS 67 (205)
Q Consensus 6 ~l~~L~~L~l~~~-~i~~--lp~~i~~l~~L~~L~l~~c~~l~~lp~~~----~~~l~~L~~L~l~~~~ 67 (205)
.+++|++|++++| .++. ++.....+++|++|++++|. ++...... ...+++|++|++++|.
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 3567777777777 5543 44445567777777777753 33221111 2245567777776664
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=5e-09 Score=85.19 Aligned_cols=176 Identities=13% Similarity=0.086 Sum_probs=110.6
Q ss_pred cccCcccceeEeecCCCccccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhcccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNAS 82 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~ 82 (205)
.|.+|.+|+.+++.+++++.+|...-...+|+.+.+.. .++.++...|..+.+|+.+++.. .++.++.
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~--------- 242 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE-NVSTIGQ--------- 242 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT-TCCEECT---------
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCC-CccCccc---------
Confidence 45667777778887777777776632357777777765 37777777777888888888854 3555555
Q ss_pred HHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-ecccccc------CC----CCCCCcceEEecCcccc--hhh
Q 048752 83 LEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWYWE------ST----NIWRSEFRLRLNNKICL--KDW 149 (205)
Q Consensus 83 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~~~------~~----~~~~~L~~L~l~~~~~~--~~~ 149 (205)
.++.+ .+|+.+.+ .+.++.++.. +|.++..|+.. +.++... .+ ..+.+|+.+.+..+... ...
T Consensus 243 -~aF~~-~~L~~i~l-p~~i~~I~~~-aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~a 318 (401)
T 4fdw_A 243 -EAFRE-SGITTVKL-PNGVTNIASR-AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGL 318 (401)
T ss_dssp -TTTTT-CCCSEEEE-ETTCCEECTT-TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTT
T ss_pred -ccccc-CCccEEEe-CCCccEEChh-HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhh
Confidence 45555 57777777 4556666666 66666666555 4332221 11 25667888887533221 233
Q ss_pred HHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCCCCCCCCCC
Q 048752 150 LIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCSDALNPPAE 202 (205)
Q Consensus 150 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~lp~~ 202 (205)
+. .+++|+.+.+..+ ++.+....+ .++ +|+.+++.+|. +..++.+
T Consensus 319 F~-~c~~L~~l~lp~~----l~~I~~~aF-~~~-~L~~l~l~~n~-~~~l~~~ 363 (401)
T 4fdw_A 319 LG-GNRKVTQLTIPAN----VTQINFSAF-NNT-GIKEVKVEGTT-PPQVFEK 363 (401)
T ss_dssp TT-TCCSCCEEEECTT----CCEECTTSS-SSS-CCCEEEECCSS-CCBCCCS
T ss_pred hc-CCCCccEEEECcc----ccEEcHHhC-CCC-CCCEEEEcCCC-Ccccccc
Confidence 44 5678888888543 455554443 677 88888888875 5555443
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.94 E-value=2.3e-09 Score=90.81 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=31.2
Q ss_pred CCCCcceEEecCcc--cchh---hHHHhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCC
Q 048752 131 IWRSEFRLRLNNKI--CLKD---WLIVQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGC 193 (205)
Q Consensus 131 ~~~~L~~L~l~~~~--~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~ 193 (205)
.+++|++|++..+. .... .+...+++|++|++++|. .++.++..+ ..+++|+.|++.+|
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--~~~~l~~~~--~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV--PLEKLATLL--QRAPQLEELGTGGY 245 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS--CHHHHHHHH--HHCTTCSEEECSBC
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC--cHHHHHHHH--hcCCcceEcccccc
Confidence 45566666664332 1111 111235677777777665 455555555 46666666664443
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=3.1e-09 Score=83.99 Aligned_cols=99 Identities=19% Similarity=0.194 Sum_probs=81.5
Q ss_pred cccceeEeecCCCccccchh-hccccccceEeccCCCCCcccChHHhhcccccc-eeecCCCccchhhhhhhccccccHH
Q 048752 7 LKKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLE-ELCISRRSFQKWEVEVEGAKNASLE 84 (205)
Q Consensus 7 l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~-~L~l~~~~~~~~~~~i~~~~~~~~~ 84 (205)
+++|+.+++++|+++.+|.. +.++.+|+.+++.+ + ++.++++.|..+.+|+ .+++.. .++.+++ .
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~-n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~----------~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH-N-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF----------G 291 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEEEECT-TCCEECT----------T
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc-c-cceehHHHhhCChhccEEEEEcc-cceEEch----------h
Confidence 67889999998889888876 88899999999988 4 8888888888899998 888866 7777776 6
Q ss_pred hhcCCCCccEEEEEeeCCeeccCCcCcccccceEE
Q 048752 85 ELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRI 119 (205)
Q Consensus 85 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~ 119 (205)
.+.++++|+.++++++.++.++.. .|.++.+|+.
T Consensus 292 aF~~c~~L~~l~l~~n~i~~I~~~-aF~~~~~L~~ 325 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDKITTLGDE-LFGNGVPSKL 325 (329)
T ss_dssp TTTTCTTEEEEEECSSCCCEECTT-TTCTTCCCCE
T ss_pred hhhCCccCCEEEeCCCccCccchh-hhcCCcchhh
Confidence 888899999998888888888877 6666655543
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=3.3e-08 Score=79.30 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=35.7
Q ss_pred CCCCcceEEecCcccch---hhHHH--hcCCccEEEeccCchhh--HHhHHHHhhhcCCCCccEEeecCCC
Q 048752 131 IWRSEFRLRLNNKICLK---DWLIV--QLQGIEDLELRKLQEQD--VIYFANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 131 ~~~~L~~L~l~~~~~~~---~~~~~--~~~~L~~L~l~~~~~~~--~~~~~~~l~~~~~~~L~~L~l~~~~ 194 (205)
.+++|++|.+..+.... ..+.. .+++|++|+++.|.... ...++..+ ..+++|+.|++++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L--~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV--DKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH--HHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc--ccCCcceEEECCCCc
Confidence 46778888885443221 12221 36788888888775111 11233333 356888888888875
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.67 E-value=4e-08 Score=70.59 Aligned_cols=87 Identities=22% Similarity=0.185 Sum_probs=66.6
Q ss_pred ccceeEeecCCCcccc-chhhccccccceEeccCCCCCcccChHHhhcc----cccceeecCCCc-cchhhhhhhccccc
Q 048752 8 KKLEILCLRGSDIKQL-PIEVGQLTWLTLLDLRECRKLEVIPPNVLSNL----SHLEELCISRRS-FQKWEVEVEGAKNA 81 (205)
Q Consensus 8 ~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l----~~L~~L~l~~~~-~~~~~~~i~~~~~~ 81 (205)
.+|+.||+++|.++.. -..+..+++|++|+|++|..++.-.-..+..+ ++|++|++++|. ++...-
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-------- 132 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-------- 132 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH--------
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH--------
Confidence 4699999999988643 23378899999999999987775433335554 379999999986 766554
Q ss_pred cHHhhcCCCCccEEEEEee-CCee
Q 048752 82 SLEELKHLPNLTSLELDIH-DVNT 104 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~-~~~~ 104 (205)
..+..+++|+.|++++| .++.
T Consensus 133 --~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 --IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp --HHGGGCTTCCEEEEESCTTCCC
T ss_pred --HHHhcCCCCCEEECCCCCCCCc
Confidence 67888999999999988 3544
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.64 E-value=3.1e-08 Score=79.78 Aligned_cols=138 Identities=16% Similarity=0.055 Sum_probs=88.3
Q ss_pred cccceeEeecCCCccc--cchhhccccccceEeccCCCCCcccChHHh-----hcccccceeecCCCccchhhhhhhccc
Q 048752 7 LKKLEILCLRGSDIKQ--LPIEVGQLTWLTLLDLRECRKLEVIPPNVL-----SNLSHLEELCISRRSFQKWEVEVEGAK 79 (205)
Q Consensus 7 l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~-----~~l~~L~~L~l~~~~~~~~~~~i~~~~ 79 (205)
..+|+.|+|++|.++. +..-...+.+|++|++++| .++......+ ...++|++|++++|.+...+.
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~------ 172 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGV------ 172 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHH------
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHH------
Confidence 3689999999999864 3333456789999999995 6654433223 245789999999999876443
Q ss_pred cccHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEeeccccccCCCCCCCcceEEecCcccchh---hHHH---h
Q 048752 80 NASLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIRIGDWYWESTNIWRSEFRLRLNNKICLKD---WLIV---Q 153 (205)
Q Consensus 80 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~---~ 153 (205)
......+..+++|++|++++|.+...... .+.. . ....++|++|+++.+..... .+.. .
T Consensus 173 ~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~-~L~~-----------~---L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~ 237 (372)
T 3un9_A 173 AVLMEGLAGNTSVTHLSLLHTGLGDEGLE-LLAA-----------Q---LDRNRQLQELNVAYNGAGDTAALALARAARE 237 (372)
T ss_dssp HHHHHHHHTCSSCCEEECTTSSCHHHHHH-HHHH-----------H---GGGCSCCCEEECCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcCEEeCCCCCCCcHHHH-HHHH-----------H---HhcCCCcCeEECCCCCCCHHHHHHHHHHHHh
Confidence 11224567899999999999988652211 0000 0 01233577777755433322 1221 3
Q ss_pred cCCccEEEeccCc
Q 048752 154 LQGIEDLELRKLQ 166 (205)
Q Consensus 154 ~~~L~~L~l~~~~ 166 (205)
.+.|++|++++|.
T Consensus 238 ~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 238 HPSLELLHLYFNE 250 (372)
T ss_dssp CSSCCEEECTTSS
T ss_pred CCCCCEEeccCCC
Confidence 5788888888886
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.59 E-value=1.8e-07 Score=76.00 Aligned_cols=151 Identities=12% Similarity=0.124 Sum_probs=74.1
Q ss_pred hccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcCCCCccEEEEEeeCCeecc
Q 048752 27 VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDVNTLP 106 (205)
Q Consensus 27 i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 106 (205)
+.++++|+.+++.+ +.++.++.+.|. ..+|+.+.+. +.++.++. ..+.++++|+.+.+.. .++.+.
T Consensus 176 F~~c~~L~~l~l~~-n~l~~I~~~aF~-~~~L~~l~lp-~~l~~I~~----------~aF~~~~~L~~l~l~~-~l~~I~ 241 (401)
T 4fdw_A 176 FYYCYNLKKADLSK-TKITKLPASTFV-YAGIEEVLLP-VTLKEIGS----------QAFLKTSQLKTIEIPE-NVSTIG 241 (401)
T ss_dssp TTTCTTCCEEECTT-SCCSEECTTTTT-TCCCSEEECC-TTCCEECT----------TTTTTCTTCCCEECCT-TCCEEC
T ss_pred hhCcccCCeeecCC-CcceEechhhEe-ecccCEEEeC-Cchheehh----------hHhhCCCCCCEEecCC-CccCcc
Confidence 44444455555544 344444444333 3444444443 22444444 4556666666666654 244444
Q ss_pred CCcCcccccceEEe-eccc--cccC--CCCCCCcceEEecCccc-------c-hhhHHHhcCCccEEEeccCchhhHHhH
Q 048752 107 RGLFLEKLGKYRIR-IGDW--YWES--TNIWRSEFRLRLNNKIC-------L-KDWLIVQLQGIEDLELRKLQEQDVIYF 173 (205)
Q Consensus 107 ~~~~~~~L~~L~~~-~~~~--~~~~--~~~~~~L~~L~l~~~~~-------~-~~~~~~~~~~L~~L~l~~~~~~~~~~~ 173 (205)
.. +|.. ..|+.. +... .+.. =..+.+|+.+.+..+.. . ...+. .+++|+.+.+.+ .++.+
T Consensus 242 ~~-aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~-~c~~L~~l~l~~----~i~~I 314 (401)
T 4fdw_A 242 QE-AFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE-GCPKLARFEIPE----SIRIL 314 (401)
T ss_dssp TT-TTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT-TCTTCCEECCCT----TCCEE
T ss_pred cc-cccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh-CCccCCeEEeCC----ceEEE
Confidence 44 3333 222222 2110 1111 12566777777743321 1 22333 567777777763 24566
Q ss_pred HHHhhhcCCCCccEEeecCCCCCCCCCC
Q 048752 174 ANELVKVGSSQLKFLRIHGCSDALNPPA 201 (205)
Q Consensus 174 ~~~l~~~~~~~L~~L~l~~~~~l~~lp~ 201 (205)
+...+ .++++|+.+.+.++ ++.++.
T Consensus 315 ~~~aF-~~c~~L~~l~lp~~--l~~I~~ 339 (401)
T 4fdw_A 315 GQGLL-GGNRKVTQLTIPAN--VTQINF 339 (401)
T ss_dssp CTTTT-TTCCSCCEEEECTT--CCEECT
T ss_pred hhhhh-cCCCCccEEEECcc--ccEEcH
Confidence 55544 67788888888553 455443
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=6.2e-07 Score=68.76 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=48.3
Q ss_pred ccccee--EeecCCCccccchh----hccccccceEeccCCCCCcccCh--HHhhcccccceeecCCCccchhhhhhhcc
Q 048752 7 LKKLEI--LCLRGSDIKQLPIE----VGQLTWLTLLDLRECRKLEVIPP--NVLSNLSHLEELCISRRSFQKWEVEVEGA 78 (205)
Q Consensus 7 l~~L~~--L~l~~~~i~~lp~~----i~~l~~L~~L~l~~c~~l~~lp~--~~~~~l~~L~~L~l~~~~~~~~~~~i~~~ 78 (205)
.+.|+. ++++.|....++.. ..++++|+.|+|++ |.+..++. +.+..+++|++|++++|++..+..
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~----- 213 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE----- 213 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-----
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCCccCCchh-----
Confidence 344444 55555544333322 24567777777777 45554331 225667777777777777765532
Q ss_pred ccccHHhhcCCCCccEEEEEeeCCee
Q 048752 79 KNASLEELKHLPNLTSLELDIHDVNT 104 (205)
Q Consensus 79 ~~~~~~~l~~l~~L~~L~l~~~~~~~ 104 (205)
+..+..+ +|++|++++|.+..
T Consensus 214 ----l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 214 ----LDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp ----GGGGTTS-CCSEEECTTSTTGG
T ss_pred ----hhhcccC-CcceEEccCCcCcc
Confidence 2233344 67777777776653
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=2.2e-06 Score=61.45 Aligned_cols=34 Identities=6% Similarity=0.130 Sum_probs=17.9
Q ss_pred ccceeecCCCccchhhhhhhccccccHHhhcCCCCccEEEEEee
Q 048752 57 HLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIH 100 (205)
Q Consensus 57 ~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~ 100 (205)
.|++||+++|.++...- ..+.++++|+.|++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL----------~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF----------DHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGG----------GGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHH----------HHhcCCCCCCEEEeCCC
Confidence 45555555555443332 34455555565555555
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.10 E-value=1.1e-06 Score=67.42 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=22.8
Q ss_pred hcccccceeecCCCccchhhhhhhccccccHHhhcCCCCccEEEEEeeCCeec
Q 048752 53 SNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDVNTL 105 (205)
Q Consensus 53 ~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 105 (205)
.++++|++|++++|++..+++ ....+..+++|+.|++++|.++++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~--------l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDD--------MSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGG--------GTTHHHHSTTCCEEECTTSCCCSG
T ss_pred hhCCCCCEEECCCCCCCCCcc--------chhHHhhCCCCCEEECCCCccCCc
Confidence 345555566665555554332 012334555555555555555554
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.02 E-value=5.5e-06 Score=59.94 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=46.9
Q ss_pred cCcccceeEeecCC-Ccc-----ccchhhccccccceEeccCCCCCcc-----cChHHhhcccccceeecCCCccchhhh
Q 048752 5 GDLKKLEILCLRGS-DIK-----QLPIEVGQLTWLTLLDLRECRKLEV-----IPPNVLSNLSHLEELCISRRSFQKWEV 73 (205)
Q Consensus 5 ~~l~~L~~L~l~~~-~i~-----~lp~~i~~l~~L~~L~l~~c~~l~~-----lp~~~~~~l~~L~~L~l~~~~~~~~~~ 73 (205)
...+.|+.|++++| .+. .+...+...++|++|++++| .+.. +... +...++|++|++++|.+.....
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~-L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEM-LKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHH-HHHCSSCCEEECCSSCCCHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHH-HHhCCCcCEEECcCCcCCHHHH
Confidence 34556666666666 553 23344555566666666663 3332 2221 3444566666666666654332
Q ss_pred hhhccccccHHhhcCCCCccEEEE--EeeCCe
Q 048752 74 EVEGAKNASLEELKHLPNLTSLEL--DIHDVN 103 (205)
Q Consensus 74 ~i~~~~~~~~~~l~~l~~L~~L~l--~~~~~~ 103 (205)
....+.+...++|++|++ ++|.+.
T Consensus 111 ------~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 111 ------LALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp ------HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred ------HHHHHHHHhCCCceEEEecCCCCCCC
Confidence 111134455556666666 445543
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.99 E-value=4.5e-06 Score=60.43 Aligned_cols=93 Identities=12% Similarity=0.074 Sum_probs=69.3
Q ss_pred ccCcccceeEeecCCCcc-----ccchhhccccccceEeccCCCCCcc-----cChHHhhcccccceeec--CCCccchh
Q 048752 4 IGDLKKLEILCLRGSDIK-----QLPIEVGQLTWLTLLDLRECRKLEV-----IPPNVLSNLSHLEELCI--SRRSFQKW 71 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~c~~l~~-----lp~~~~~~l~~L~~L~l--~~~~~~~~ 71 (205)
+...++|++|+|++|.|. .+...+...+.|++|++++ +.++. +... +...++|++|++ ++|.+...
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~i~~~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES-NFISGSGILALVEA-LQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS-SCCCHHHHHHHHHG-GGGCSSCCEEECCCCSSCCCHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC-CcCCHHHHHHHHHH-HHhCCCceEEEecCCCCCCCHH
Confidence 445688999999999985 3555567778999999999 45654 3333 667789999999 88988764
Q ss_pred hhhhhccccccHHhhcCCCCccEEEEEeeCCee
Q 048752 72 EVEVEGAKNASLEELKHLPNLTSLELDIHDVNT 104 (205)
Q Consensus 72 ~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 104 (205)
.. ....+.+...++|+.|++++|.+..
T Consensus 139 g~------~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 139 VE------MEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HH------HHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HH------HHHHHHHHhCCCcCEEeccCCCCCh
Confidence 43 1122466677899999999987743
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.88 E-value=3.3e-05 Score=61.82 Aligned_cols=172 Identities=16% Similarity=0.151 Sum_probs=104.1
Q ss_pred ccCcccceeEeecCCCcc----------ccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhh
Q 048752 4 IGDLKKLEILCLRGSDIK----------QLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEV 73 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~----------~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 73 (205)
+.++++|+.|.+...... .+...+..+++|+.|++++|..+ .++. + .+++|++|++..|.+..-..
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCCChHHH
Confidence 456789999998654321 35555778899999999986333 4554 3 38899999998888764333
Q ss_pred hhhccccccHHhh--cCCCCccEEEEEee--C------CeeccCCc---CcccccceEEe---eccc---cccCCCCCCC
Q 048752 74 EVEGAKNASLEEL--KHLPNLTSLELDIH--D------VNTLPRGL---FLEKLGKYRIR---IGDW---YWESTNIWRS 134 (205)
Q Consensus 74 ~i~~~~~~~~~~l--~~l~~L~~L~l~~~--~------~~~~~~~~---~~~~L~~L~~~---~~~~---~~~~~~~~~~ 134 (205)
..+ ..+++|+.|+++.+ . +..+...+ .+++|+.|.+. ++.. .+.....++.
T Consensus 211 ----------~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~ 280 (362)
T 2ra8_A 211 ----------EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280 (362)
T ss_dssp ----------HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGG
T ss_pred ----------HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCC
Confidence 344 37999999999742 1 21121111 34566666654 1110 1111125789
Q ss_pred cceEEecCcccchhh---HH---HhcCCccEEEeccCchhhHHhHHHHhhhcCCCCccEEeecCCC
Q 048752 135 EFRLRLNNKICLKDW---LI---VQLQGIEDLELRKLQEQDVIYFANELVKVGSSQLKFLRIHGCS 194 (205)
Q Consensus 135 L~~L~l~~~~~~~~~---~~---~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 194 (205)
|++|+++.+...... +. ..+++|+.|++++|. .-...-..+. ..+ ...++++++.
T Consensus 281 L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~--i~d~~~~~l~-~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY--LSDEMKKELQ-KSL--PMKIDVSDSQ 341 (362)
T ss_dssp CSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB--CCHHHHHHHH-HHC--CSEEECCSBC
T ss_pred CCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc--CCHHHHHHHH-HHc--CCEEEecCCc
Confidence 999999666433321 22 257999999999886 3233333332 112 3456776654
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.50 E-value=0.00014 Score=49.41 Aligned_cols=56 Identities=20% Similarity=0.305 Sum_probs=45.1
Q ss_pred eeEeecCCCcc--ccchhhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccc
Q 048752 11 EILCLRGSDIK--QLPIEVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQ 69 (205)
Q Consensus 11 ~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 69 (205)
.+.+-++.+++ .+|..+. .+|++|+|++ |.++.+|.++|..+++|++|++.+|...
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCee
Confidence 46777788887 8887543 4788999998 7889999887888999999999888654
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.45 E-value=0.00034 Score=56.33 Aligned_cols=133 Identities=10% Similarity=0.163 Sum_probs=79.9
Q ss_pred ccccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcCCCCccEEEEE
Q 048752 20 IKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELD 98 (205)
Q Consensus 20 i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~ 98 (205)
++.+... +.++.+|+.+.+.+ .+..++...+.++.+|+.+.+. +.++.++. ..+.++.+|+.+.+.
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~----------~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFS-SRITELPE----------SVFAGCISLKSIDIP 319 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECC-TTCCEECT----------TTTTTCTTCCEEECC
T ss_pred ceEcccceeeecccccEEeccc--ccceecCcccccccccccccCC-CcccccCc----------eeecCCCCcCEEEeC
Confidence 4444433 77888999998876 3566777778889999999984 56777777 688889999988774
Q ss_pred eeCCeeccCCcCcccccceEEeeccccccCCCCCCCcceEEecCcc--cchhhHHHhcCCccEEEeccCchhhHHhHHHH
Q 048752 99 IHDVNTLPRGLFLEKLGKYRIRIGDWYWESTNIWRSEFRLRLNNKI--CLKDWLIVQLQGIEDLELRKLQEQDVIYFANE 176 (205)
Q Consensus 99 ~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 176 (205)
. .++.+... +|.. +.+|+.+.+..+. .....+. .+++|+.+++.++. ..+ ..
T Consensus 320 ~-~v~~I~~~-aF~~------------------C~~L~~i~ip~sv~~I~~~aF~-~C~~L~~i~~~~~~----~~~-~~ 373 (394)
T 4gt6_A 320 E-GITQILDD-AFAG------------------CEQLERIAIPSSVTKIPESAFS-NCTALNNIEYSGSR----SQW-NA 373 (394)
T ss_dssp T-TCCEECTT-TTTT------------------CTTCCEEEECTTCCBCCGGGGT-TCTTCCEEEESSCH----HHH-HT
T ss_pred C-cccEehHh-HhhC------------------CCCCCEEEECcccCEEhHhHhh-CCCCCCEEEECCce----eeh-hh
Confidence 3 34444444 4443 4445555553221 1223344 57888888887664 222 23
Q ss_pred hhhcCCCCccEEeecCC
Q 048752 177 LVKVGSSQLKFLRIHGC 193 (205)
Q Consensus 177 l~~~~~~~L~~L~l~~~ 193 (205)
+ ..+.+|+.+.+..+
T Consensus 374 ~--~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 374 I--STDSGLQNLPVAPG 388 (394)
T ss_dssp C--BCCCCC--------
T ss_pred h--hccCCCCEEEeCCC
Confidence 3 36777887776654
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.30 E-value=0.0012 Score=53.14 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=46.6
Q ss_pred cccCcccceeEeecCCCccccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCCC
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRR 66 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~ 66 (205)
.|.++.+|+.+.+..+ +..++.. +.++.+|+.+++.. .++.++...+.++..|+.+.+..+
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCTT
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC--CceEeCchhhccccccceeecCCC
Confidence 4678899999999764 5666655 88899999999976 277777777888888888876443
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.28 E-value=0.003 Score=50.76 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=36.3
Q ss_pred cccch-hhccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhh
Q 048752 21 KQLPI-EVGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEV 73 (205)
Q Consensus 21 ~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 73 (205)
..+.. .+.++++|+.+.+.+ .+..++...|..+.+|+.+++..+ ++.++.
T Consensus 151 ~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~ 201 (394)
T 4fs7_A 151 TVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN-LKIIRD 201 (394)
T ss_dssp CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT-CCEECT
T ss_pred cccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC-ceEeCc
Confidence 33433 388899999999976 357788887889999999998654 444433
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.03 E-value=0.0011 Score=52.89 Aligned_cols=102 Identities=16% Similarity=0.102 Sum_probs=71.1
Q ss_pred ccCcccceeEeecCCCccccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhcccccc
Q 048752 4 IGDLKKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNAS 82 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~ 82 (205)
+..+..|+...+.. .++.++.. +..+.+|+.+.+.. .++.++...+..+.+|+.+.+. ..+..++.
T Consensus 213 f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~-~~i~~i~~--------- 279 (379)
T 4h09_A 213 FSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFY-AKVKTVPY--------- 279 (379)
T ss_dssp TTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEEC-CCCSEECT---------
T ss_pred cccccccceeeecc-ceeEEccccccCCccceEEEcCC--CccEeCccccceeehhcccccc-ccceeccc---------
Confidence 34556677776654 35555544 67788888888876 2677777767888888888874 34666665
Q ss_pred HHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe
Q 048752 83 LEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR 120 (205)
Q Consensus 83 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~ 120 (205)
..+.++++|+.+.+.++.++.++.. .|.++.+|+-.
T Consensus 280 -~aF~~c~~L~~i~l~~~~i~~I~~~-aF~~c~~L~~i 315 (379)
T 4h09_A 280 -LLCSGCSNLTKVVMDNSAIETLEPR-VFMDCVKLSSV 315 (379)
T ss_dssp -TTTTTCTTCCEEEECCTTCCEECTT-TTTTCTTCCEE
T ss_pred -cccccccccccccccccccceehhh-hhcCCCCCCEE
Confidence 5778888888888877778877776 67666666544
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.00 E-value=0.0014 Score=52.75 Aligned_cols=122 Identities=10% Similarity=0.142 Sum_probs=82.4
Q ss_pred cccCcccceeEeecCCCccccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhccccc
Q 048752 3 VIGDLKKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNA 81 (205)
Q Consensus 3 ~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~ 81 (205)
.|..+..|+.+.+..+ +..+... +.++.+|+.+.+.. .++.++...|..+.+|+.+++.. .++.++.
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~-------- 327 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE-GITQILD-------- 327 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT-TCCEECT--------
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC-cccEehH--------
Confidence 4667888888888654 4455544 78889999999964 57888888889999999999954 4776766
Q ss_pred cHHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe-ecccc--ccCCCCCCCcceEEe
Q 048752 82 SLEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR-IGDWY--WESTNIWRSEFRLRL 140 (205)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~-~~~~~--~~~~~~~~~L~~L~l 140 (205)
.++.++.+|+.+.+. ..++.+... +|.++.+|+-. +.+.. +..-..+.+|+.+.+
T Consensus 328 --~aF~~C~~L~~i~ip-~sv~~I~~~-aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 328 --DAFAGCEQLERIAIP-SSVTKIPES-AFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPV 385 (394)
T ss_dssp --TTTTTCTTCCEEEEC-TTCCBCCGG-GGTTCTTCCEEEESSCHHHHHTCBCCCCC-----
T ss_pred --hHhhCCCCCCEEEEC-cccCEEhHh-HhhCCCCCCEEEECCceeehhhhhccCCCCEEEe
Confidence 688899999998884 347777666 77777766655 44321 111124445555554
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.95 E-value=0.00073 Score=53.93 Aligned_cols=102 Identities=15% Similarity=0.183 Sum_probs=77.2
Q ss_pred ccCcccceeEeecCCCccccchh-hccccccceEeccCCCCCcccChHHhhcccccceeecCCCccchhhhhhhcccccc
Q 048752 4 IGDLKKLEILCLRGSDIKQLPIE-VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNAS 82 (205)
Q Consensus 4 i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~ 82 (205)
+..+..|+.+.+..+ ++.+... +.++.+|+.+.+.. .+..++...|..+.+|+.+.+..+.++.++.
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~--------- 303 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEP--------- 303 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECT---------
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceeccccccccccccccccccccccceehh---------
Confidence 456778888888664 7777655 77888999998875 4778887778889999999998778887777
Q ss_pred HHhhcCCCCccEEEEEeeCCeeccCCcCcccccceEEe
Q 048752 83 LEELKHLPNLTSLELDIHDVNTLPRGLFLEKLGKYRIR 120 (205)
Q Consensus 83 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~ 120 (205)
..+.++.+|+.+.+.. .++.+... +|.++.+|+-.
T Consensus 304 -~aF~~c~~L~~i~lp~-~l~~I~~~-aF~~C~~L~~i 338 (379)
T 4h09_A 304 -RVFMDCVKLSSVTLPT-ALKTIQVY-AFKNCKALSTI 338 (379)
T ss_dssp -TTTTTCTTCCEEECCT-TCCEECTT-TTTTCTTCCCC
T ss_pred -hhhcCCCCCCEEEcCc-cccEEHHH-HhhCCCCCCEE
Confidence 6888899999887743 46666666 66666655443
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.19 E-value=0.0034 Score=42.44 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=45.7
Q ss_pred ceEeccCCCCCc--ccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcCCCCccEEEEEeeCCee
Q 048752 34 TLLDLRECRKLE--VIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDVNT 104 (205)
Q Consensus 34 ~~L~l~~c~~l~--~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 104 (205)
.+++-++ +.++ .+|.+ + -.+|++|++++|+++.++. ..+..+++|++|++++|.+..
T Consensus 11 ~~v~Cs~-~~L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l~~----------~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGR-RGLTWASLPTA-F--PVDTTELVLTGNNLTALPP----------GLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCS-SCCCTTTSCSC-C--CTTCSEEECTTSCCSSCCT----------TTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCC-CCCccccCCCC-C--CcCCCEEECCCCcCCccCh----------hhhhhccccCEEEecCCCeec
Confidence 3677777 7777 88864 1 2368999999999999998 678889999999999986643
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.00 E-value=0.038 Score=40.08 Aligned_cols=12 Identities=0% Similarity=0.033 Sum_probs=6.8
Q ss_pred CCccEEEeccCc
Q 048752 155 QGIEDLELRKLQ 166 (205)
Q Consensus 155 ~~L~~L~l~~~~ 166 (205)
+.|+.|+++.+.
T Consensus 157 ~tL~~L~l~~~~ 168 (197)
T 1pgv_A 157 ESLLRVGISFAS 168 (197)
T ss_dssp SSCCEEECCCCC
T ss_pred CCcCeEeccCCC
Confidence 556666665543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.85 E-value=0.22 Score=36.04 Aligned_cols=44 Identities=18% Similarity=0.354 Sum_probs=19.6
Q ss_pred cccccceeecCCCccchhhhhhhccccccHHhhcCCCCccEEEEEeeCCe
Q 048752 54 NLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHDVN 103 (205)
Q Consensus 54 ~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 103 (205)
.-..|++|++++|.+..... ....+.+..=+.|++|++++|.+.
T Consensus 68 ~N~~L~~L~L~~n~igd~ga------~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEA------RGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHH------TTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hCCCcCEEEccCCCCChHHH------HHHHHHHhcCCccCeEecCCCcCC
Confidence 33455555555555543332 111123333345555555555443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.68 E-value=2.9 Score=26.41 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=15.2
Q ss_pred hccccccceEeccCCCCCcccChHHhhcccccceeec
Q 048752 27 VGQLTWLTLLDLRECRKLEVIPPNVLSNLSHLEELCI 63 (205)
Q Consensus 27 i~~l~~L~~L~l~~c~~l~~lp~~~~~~l~~L~~L~l 63 (205)
|.++.+|+.+.+.. .++.+....|..+.+|+.+.+
T Consensus 16 F~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 16 FAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp TTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEE
T ss_pred hcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEE
Confidence 44444444444443 234444433444444444444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=64.32 E-value=3.2 Score=26.23 Aligned_cols=49 Identities=10% Similarity=0.073 Sum_probs=39.0
Q ss_pred CCCcccChHHhhcccccceeecCCCccchhhhhhhccccccHHhhcCCCCccEEEEEeeC
Q 048752 42 RKLEVIPPNVLSNLSHLEELCISRRSFQKWEVEVEGAKNASLEELKHLPNLTSLELDIHD 101 (205)
Q Consensus 42 ~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~i~~~~~~~~~~l~~l~~L~~L~l~~~~ 101 (205)
..++.+....|..+.+|+.+.+. ..++.+.. .++.++.+|+.+.+.+..
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP-~~v~~Ig~----------~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQ-PNIGLLYD----------GMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEEC-TTSSCCCT----------TSSTTCTTCCCEEECCSC
T ss_pred CccCEecHHHhcCCCCCcEEEcC-CchheEcH----------HHHhccCCccEEEEcCCC
Confidence 45677887778999999999985 45777776 688999999999887643
Done!