BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048753
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 110/282 (39%), Positives = 169/282 (59%), Gaps = 6/282 (2%)
Query: 8 VPGMEKFLRCRDLPSFCRAEDPMDMNLQLVVSETRSSVRADGLVLNTFEDLEGPVVSQIR 67
+PG++ F R +D+ F R +P D+ L+ + + ++LNTF +LE V++ +
Sbjct: 188 IPGLKNF-RLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALS 246
Query: 68 AHFPKIYTIGPLNAHLK--ARIPENTHSSNSLWEVDRSCIAWLDNQPSKSVIFVSFGSVA 125
+ P IY IGPL + LK +I + ++LW+ D C+ WL+++ SV++V+FGS
Sbjct: 247 STIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTT 306
Query: 126 VMQRDQLIEFWYGLVNSHKRFLWVIRPDLISGKDGENQIPEELDKATKERGYIAGWVPQE 185
VM +QL+EF +GL N K FLW+IRPDL+ G G E +RG IA W PQ+
Sbjct: 307 VMTPEQLLEFAWGLANCKKSFLWIIRPDLVIG--GSVIFSSEFTNEIADRGLIASWCPQD 364
Query: 186 EVLGHKAVGGFLTHCGWNSTLESIVARMPMICWPSFADQQINSRFVDEVWKLGLDMKDLC 245
+VL H ++GGFLTHCGWNST ESI A +PM+CWP FADQ + RF+ W++G+++
Sbjct: 365 KVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNV 424
Query: 246 DRKIVEKMVNELLVERRAAFMKS-ADRMANLAIKSVNEGGSS 286
R+ + K++NE++ + MK A + A ++ GG S
Sbjct: 425 KREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCS 466
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 28/284 (9%)
Query: 26 AEDPMDMNLQLVVSETRSSVRADGLVLNTFEDLEGPVVSQIRA---HFPKIYTIGPLNAH 82
A+D D + ++ T+ A+G+++NTF +LE + ++ P +Y +GPL
Sbjct: 186 AQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLV-- 243
Query: 83 LKARIPENTHSSNSLWEVDRSCIAWLDNQPSKSVIFVSFGSVAVMQRDQLIEFWYGLVNS 142
N + + C+ WLDNQP SV++VSFGS + +QL E GL +S
Sbjct: 244 -------NIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADS 296
Query: 143 HKRFLWVIRP----------DLISGKDGENQIPEELDKATKERGY-IAGWVPQEEVLGHK 191
+RFLWVIR D S D +P + TK+RG+ I W PQ +VL H
Sbjct: 297 EQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHP 356
Query: 192 AVGGFLTHCGWNSTLESIVARMPMICWPSFADQQINSRFVDEVWKLGLDMK----DLCDR 247
+ GGFLTHCGWNSTLES+V+ +P+I WP +A+Q++N+ + E + L + L R
Sbjct: 357 STGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRR 416
Query: 248 KIVEKMVNELLV-ERRAAFMKSADRMANLAIKSVNEGGSSNKGV 290
+ V ++V L+ E + A + + + G+S K +
Sbjct: 417 EEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKAL 460
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 152/299 (50%), Gaps = 32/299 (10%)
Query: 2 DRLIKHVPGMEKFLRCRDLPSFCRAEDPMDMNLQLVVSETRSSVRADGLVLNTFEDLEGP 61
D + ++PG+ + LP C +D + + R + G+++NTF DLE
Sbjct: 170 DHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDT---KGIIVNTFSDLEQS 226
Query: 62 VVSQIRAH---FPKIYTIGPLNAHLKARIPENTHSSNSLWEVDRSCIAWLDNQPSKSVIF 118
+ + H P IY +GPL P+ + + L + WLD QP KSV+F
Sbjct: 227 SIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDL------ILKWLDEQPDKSVVF 280
Query: 119 VSFGSVAV-MQRDQLIEFWYGLVNSHKRFLWVIRPDLISGKDGENQIPEELDK--ATKER 175
+ FGS+ V Q+ E GL +S RFLW S + PE + + +
Sbjct: 281 LCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGK 333
Query: 176 GYIAGWVPQEEVLGHKAVGGFLTHCGWNSTLESIVARMPMICWPSFADQQINS-RFVDEV 234
G I GW PQ EVL HKA+GGF++HCGWNS LES+ +P++ WP +A+QQ+N+ R V E
Sbjct: 334 GMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE- 392
Query: 235 WKLGLDMK-------DLCDRKIVEKMVNELLVERRAAFMKSADRMANLAIKSVNEGGSS 286
W +GL ++ D+ + +EK + +L+ ++ + K M ++ +V +GGSS
Sbjct: 393 WGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM-DKDSIVHKKVQEMKEMSRNAVVDGGSS 450
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 152/299 (50%), Gaps = 32/299 (10%)
Query: 2 DRLIKHVPGMEKFLRCRDLPSFCRAEDPMDMNLQLVVSETRSSVRADGLVLNTFEDLEGP 61
D + ++PG+ + LP C +D + + R + G+++NTF DLE
Sbjct: 170 DHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDT---KGIIVNTFSDLEQS 226
Query: 62 VVSQIRAH---FPKIYTIGPLNAHLKARIPENTHSSNSLWEVDRSCIAWLDNQPSKSVIF 118
+ + H P IY +GPL P+ + + L + WLD QP KSV+F
Sbjct: 227 SIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDL------ILKWLDEQPDKSVVF 280
Query: 119 VSFGSVAV-MQRDQLIEFWYGLVNSHKRFLWVIRPDLISGKDGENQIPEELDK--ATKER 175
+ FGS+ V Q+ E GL +S RFLW S + PE + + +
Sbjct: 281 LCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGK 333
Query: 176 GYIAGWVPQEEVLGHKAVGGFLTHCGWNSTLESIVARMPMICWPSFADQQINS-RFVDEV 234
G I GW PQ EVL HKA+GGF++HCGWNS LES+ +P++ WP +A+QQ+N+ R V E
Sbjct: 334 GMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE- 392
Query: 235 WKLGLDMK-------DLCDRKIVEKMVNELLVERRAAFMKSADRMANLAIKSVNEGGSS 286
W +GL ++ D+ + +EK + +L+ ++ + K M ++ +V +GGSS
Sbjct: 393 WGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM-DKDSIVHKKVQEMKEMSRNAVVDGGSS 450
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 136/284 (47%), Gaps = 36/284 (12%)
Query: 2 DRLIKHVPGMEKFLRCRDLPSFCRAEDPMDMNLQLVVSETRSSV-----RADGLVLNTFE 56
D L+ +PGM K +R RDL E + NL + S + +A + +N+FE
Sbjct: 170 DELLNFIPGMSK-VRFRDL-----QEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFE 223
Query: 57 DLEGPVVSQIRAHFPKIYTIGPLNAHLKARIPENTHSSNSLWEVDRSCIAWLDNQPSKSV 116
+L+ + + +++ IGP N + NT C+ WL + SV
Sbjct: 224 ELDDSLTNDLKSKLKTYLNIGPFNLITPPPVVPNT----------TGCLQWLKERKPTSV 273
Query: 117 IFVSFGSVAVMQRDQLIEFWYGLVNSHKRFLWVIRPDLISGKDGENQIPEELDKATKERG 176
+++SFG+V +++ L S F+W +R +PE + T+ G
Sbjct: 274 VYISFGTVTTPPPAEVVALSEALEASRVPFIWSLR------DKARVHLPEGFLEKTRGYG 327
Query: 177 YIAGWVPQEEVLGHKAVGGFLTHCGWNSTLESIVARMPMICWPSFADQQINSRFVDEVWK 236
+ W PQ EVL H+AVG F+THCGWNS ES+ +P+IC P F DQ++N R V++V +
Sbjct: 328 MVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLE 387
Query: 237 LGLDMKD---------LCDRKIVEKMVNELLVERRAAFMKSADR 271
+G+ ++ C +I+ + + L E A ++ADR
Sbjct: 388 IGVRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADR 431
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 120/243 (49%), Gaps = 18/243 (7%)
Query: 46 RADGLVLNTFEDLEGPVVSQIRAHFPKIYTIGPLNAHLKARIPENTHSSNSLWEVDRSCI 105
RA+ + +N+F + + +++ + F + +GP N R + H C+
Sbjct: 215 RANAVAINSFATIHPLIENELNSKFKLLLNVGPFNLTTPQRKVSDEHG----------CL 264
Query: 106 AWLDNQPSKSVIFVSFGSVAVMQRDQLIEFWYGLVNSHKRFLWVIRPDLISGKDGENQIP 165
WLD + SV+++SFGSV +L L F+W R D + ++P
Sbjct: 265 EWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFR------GDPKEKLP 318
Query: 166 EELDKATKERGYIAGWVPQEEVLGHKAVGGFLTHCGWNSTLESIVARMPMICWPSFADQQ 225
+ + TK +G I W PQ E+L H +VG FLTH GWNS LE IV +PMI P F DQ
Sbjct: 319 KGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQG 378
Query: 226 INSRFVDEVWKLGLDMKD-LCDRKIVEKMVNELLVERRAAFMKSAD-RMANLAIKSVNEG 283
+N+ + V ++G+ + + + ++ ++K + + + M+ ++ A K+V +
Sbjct: 379 LNTILTESVLEIGVGVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQN 438
Query: 284 GSS 286
G+S
Sbjct: 439 GTS 441
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 181 WVPQEEVLGHKAVGGFLTHCGWNSTLESIVARMPMICWPSFADQQIN 227
W+PQ ++LGH F+TH G N E+I +P + P FADQ N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 181 WVPQEEVLGHKAVGGFLTHCGWNSTLESIVARMPMICWPSFADQQINSRFVDEVWKLGLD 240
WVPQ ++L + F+TH G ST+E++ +PM+ P A+Q +N+ + + +LGL
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNA---ERIVELGLG 366
Query: 241 MKDLCDRKIVEKMVNELL 258
D+ EK+ +L
Sbjct: 367 RHIPRDQVTAEKLREAVL 384
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query: 181 WVPQEEVLGHKAVGGFLTHCGWNSTLESIVARMPMICWPSFADQQINSRFVDEVWKLGLD 240
WVPQ +L + F+TH G + E + PMI P DQ N+ D + LG+
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNA---DMLQGLGVA 344
Query: 241 MKDLCDRKIVEKMVNELLVERRAAFM---KSADRMANLAIKSVNEGGS 285
K E+ +LL E A + + A R+ + + EGG+
Sbjct: 345 RK-----LATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGT 387
>pdb|3S6P|A Chain A, Crystal Structure Of Helicoverpa Armigera Stunt Virus
pdb|3S6P|B Chain B, Crystal Structure Of Helicoverpa Armigera Stunt Virus
pdb|3S6P|C Chain C, Crystal Structure Of Helicoverpa Armigera Stunt Virus
pdb|3S6P|D Chain D, Crystal Structure Of Helicoverpa Armigera Stunt Virus
Length = 575
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 9 PGMEKFLRCRDLPSFCRAEDPMDMNLQLVVSETRSSVRADGLVLNTFEDLEGPVVSQIRA 68
PG E R RDLP + D D N+ V+ RS + +V T++ EG V+ +
Sbjct: 485 PGYE---RTRDLPDYTGIRDSFDQNMSTAVAHFRSLSHSCSIVTKTYQGWEG--VTNVNT 539
Query: 69 HF 70
F
Sbjct: 540 PF 541
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 181 WVPQEEVLGHKAVGGFLTHCGWNSTLESIVARMPMICWPSFADQQINSRFVDEVWKLGL- 239
W+P VL H LTH + LE+ A +P++ P FA + S + V +LGL
Sbjct: 288 WIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPS--AERVIELGLG 343
Query: 240 ------DMKDLCDRKIVEKMVNE 256
++ R+ VE++ +
Sbjct: 344 SVLRPDQLEPASIREAVERLAAD 366
>pdb|1OHF|A Chain A, The Refined Structure Of Nudaurelia Capensis Omega Virus
pdb|1OHF|B Chain B, The Refined Structure Of Nudaurelia Capensis Omega Virus
pdb|1OHF|C Chain C, The Refined Structure Of Nudaurelia Capensis Omega Virus
pdb|1OHF|D Chain D, The Refined Structure Of Nudaurelia Capensis Omega Virus
Length = 644
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 14 FLRCRDLPSFCRAEDPMDMNLQLVVSETRSSVRADGLVLNTFEDLEGPVVSQIRAHF 70
F R DLP F D +D+N+ V RS ++ +V T++ EG V+ + F
Sbjct: 482 FDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIVTKTYQGWEG--VTNVNTPF 536
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 37 VVSETRSSVRADGLVLNTFEDLEGPVVSQIRAHFPKIYTIGPLNAHLKARIPENTHSSNS 96
VVS +S+R DG + + + +V R HFP + + P+ + KA H SNS
Sbjct: 235 VVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLV-SYSPVLSKSKA-----FHESNS 288
Query: 97 LWEVDRSCI 105
+ E+ +C
Sbjct: 289 VSEITNACF 297
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 27 EDPMDMNLQ----LVVSETRSSVRADGLVLNTFEDLEGPVVSQIRAHFPKIYTIGPLNAH 82
E P NL +VS +S+R DG + + + +V RAHFP + T P+ +
Sbjct: 220 ERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRAHFP-LATYAPVISA 278
Query: 83 LKARIPENTHSSNSLWEVDRSCI 105
KA H S+ E+ +C
Sbjct: 279 EKAY-----HEQLSVAEITNACF 296
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 181 WVPQEEVLGHKAVGGFLTHCGWNSTLESIVARMPMICWPSFADQQINSRFVDEV 234
WVP +VL V +TH G + E++ P++ P D Q +R VD++
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQL 355
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 181 WVPQEEVLGHKAVGGFLTHCGWNSTLESIVARMPMICWPSFADQQINSRFVDEV 234
WVP +VL V +TH G + E++ P++ P D Q +R VD++
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQL 355
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 11 MEKFLRCRDLPSFCRAEDPMDMNLQLVVSETRSSVRADGLVLNTFEDLEGPVVSQIRAHF 70
M L D+P + E+ +++ R+ R+ GL+L+T ++L V +I +
Sbjct: 1687 MNTLLANADIPDLFQGEE-----YDKLLNNLRNKTRSLGLLLDTEQELYDWFVGEIAKNL 1741
Query: 71 PKIYTI-GPLNAHLKARIPENTHSSNSLWEVDRSCIAWLDNQPSKSVIFVSFGSVAVM 127
++TI P N A I SS +L+ +R I W+ + +K++ V+ V V+
Sbjct: 1742 HVVFTICDPTNNKSSAMI-----SSPALF--NRCIINWMGDWDTKTMSQVANNMVDVI 1792
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 11 MEKFLRCRDLPSFCRAEDPMDMNLQLVVSETRSSVRADGLVLNTFEDLEGPVVSQIRAHF 70
M L D+P + E+ +++ R+ R+ GL+L+T ++L V +I +
Sbjct: 1468 MNTLLANADIPDLFQGEE-----YDKLLNNLRNKTRSLGLLLDTEQELYDWFVGEIAKNL 1522
Query: 71 PKIYTI-GPLNAHLKARIPENTHSSNSLWEVDRSCIAWLDNQPSKSVIFVSFGSVAVM 127
++TI P N A I SS +L+ +R I W+ + +K++ V+ V V+
Sbjct: 1523 HVVFTICDPTNNKSSAMI-----SSPALF--NRCIINWMGDWDTKTMSQVANNMVDVV 1573
>pdb|1VBM|A Chain A, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
pdb|1VBM|B Chain B, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
Length = 318
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 168 LDKATKERGYIAGWVPQEEVLGHKAVGGFLTHCGWNSTLESIVAR--MPMICWPSF 221
L K +ERG +A +E + A G +CG++ T +S+ +P++C F
Sbjct: 2 LIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRF 57
>pdb|1X8X|A Chain A, Tyrosyl T-Rna Synthetase From E.Coli Complexed With
Tyrosine
Length = 322
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 168 LDKATKERGYIAGWVPQEEVLGHKAVGGFLTHCGWNSTLESIVAR--MPMICWPSF 221
L K +ERG +A +E + A G +CG++ T +S+ +P++C F
Sbjct: 6 LIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRF 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,212,108
Number of Sequences: 62578
Number of extensions: 363982
Number of successful extensions: 713
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 691
Number of HSP's gapped (non-prelim): 22
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)