BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048754
(625 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z6D|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
pdb|2Z6D|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
Length = 130
Score = 101 bits (252), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/114 (43%), Positives = 67/114 (58%), Gaps = 9/114 (7%)
Query: 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDP 111
T +FVV+DA P PI+Y + F TGY + E++GRNCRFLQ P D
Sbjct: 14 TLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQ---------GPDTDK 64
Query: 112 VVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
V++IR C++ G + G LLN+KKDGTP N L + PI+DD G IG+Q+
Sbjct: 65 NEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQV 118
>pdb|2Z6C|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
pdb|2Z6C|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
Length = 129
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 67/114 (58%), Gaps = 9/114 (7%)
Query: 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDP 111
T +FVV+DA PD+PI+Y + F TGY + EV+GRNCRFLQ A
Sbjct: 15 TFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADE------- 67
Query: 112 VVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
+++IR L G + G +LN+KKDGT N L +API+D+ G V IG+Q+
Sbjct: 68 --LAKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPIKDESGKVLKFIGMQV 119
>pdb|1N9L|A Chain A, Crystal Structure Of The Phot-lov1 Domain From
Chlamydomonas Reinhardtii In The Dark State.
pdb|1N9N|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State. Data Set
Of A Single Crystal.
pdb|1N9O|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State.
Composite Data Set
Length = 109
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 65/110 (59%), Gaps = 9/110 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+FVVADA PD P++Y ++ F TGY DEVLG NCRFLQ DP V
Sbjct: 5 TFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEG---------TDPKEVQ 55
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
+IR +++G LLN++KDGTP N L + PI+ DG V+ +G+Q+
Sbjct: 56 KIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGRVSKFVGVQV 105
>pdb|3HJK|A Chain A, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid
(Vvd).
pdb|3HJK|B Chain B, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid
(Vvd)
Length = 154
Score = 90.5 bits (223), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/120 (38%), Positives = 70/120 (58%), Gaps = 6/120 (5%)
Query: 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRD----PRAQRRHPL 108
T + V+ D D PI+Y ++ F TGY EVLGRNCRFLQ D P++ R++
Sbjct: 37 TSCALVLCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKY-- 94
Query: 109 VDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168
VD ++ +R+ ++ E Q E++NFKK+G VN L + P+RD+ G + +G Q +E
Sbjct: 95 VDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCETE 154
>pdb|3RH8|B Chain B, Crystal Structure Of The Light-State Dimer Of Fungal
Blue-Light Photoreceptor Vivid
pdb|3RH8|D Chain D, Crystal Structure Of The Light-State Dimer Of Fungal
Blue-Light Photoreceptor Vivid
Length = 148
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Query: 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRD----PRAQRRHPL 108
T + ++ D D PI+Y ++ F TGY EVLGRNCRFLQ D P++ R++
Sbjct: 33 TSCALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKY-- 90
Query: 109 VDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
VD ++ IR+ ++ E Q E++NFKK+G VN L + P+RD+ G + +G Q
Sbjct: 91 VDSNTINTIRKAIDRNAEVQVEVVNFKKNGQRFVNFLTIIPVRDETGEYRYSMGFQ 146
>pdb|3IS2|A Chain A, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid
Form Of Vivid
Length = 154
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 6/120 (5%)
Query: 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRD----PRAQRRHPL 108
T + ++ D D PI+Y ++ F TGY EVLGRNCRFLQ D P++ R++
Sbjct: 37 TSXALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKY-- 94
Query: 109 VDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168
VD ++ +R+ ++ E Q E++NFKK+G VN L + P+RD+ G + +G Q +E
Sbjct: 95 VDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCETE 154
>pdb|2PD8|A Chain A, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of
Vivid
pdb|2PD8|B Chain B, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of
Vivid
Length = 149
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query: 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRD----PRAQRRHPL 108
T ++ ++ D D PI+Y ++ F TGY EVLGRNCRFLQ D P++ R++
Sbjct: 34 TSSALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKY-- 91
Query: 109 VDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
VD ++ +R+ ++ E Q E++NFKK+G VN L + P+RD+ G + +G Q
Sbjct: 92 VDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQ 147
>pdb|3IS2|B Chain B, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid
Form Of Vivid
Length = 154
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 6/120 (5%)
Query: 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRD----PRAQRRHPL 108
T + ++ D D PI+Y ++ F TGY EVLGRNCRFLQ D P++ R++
Sbjct: 37 TSCALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKY-- 94
Query: 109 VDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168
VD ++ +R+ ++ E Q E++NFKK+G VN L + P+RD+ G + +G Q +E
Sbjct: 95 VDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCETE 154
>pdb|3HJI|A Chain A, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant Of
Vivid (Vvd).
pdb|3HJI|B Chain B, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant Of
Vivid (Vvd)
Length = 154
Score = 90.1 bits (222), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 6/120 (5%)
Query: 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRD----PRAQRRHPL 108
T + V+ D D P++Y ++ F TGY EVLGRNCRFLQ D P++ R++
Sbjct: 37 TSCALVLCDLKQKDTPVVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKY-- 94
Query: 109 VDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168
VD ++ +R+ ++ E Q E++NFKK+G VN L + P+RD+ G + +G Q +E
Sbjct: 95 VDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCETE 154
>pdb|3D72|A Chain A, 1.65 Angstrom Crystal Structure Of The Cys71val Variant In
The Fungal Photoreceptor Vvd
pdb|3D72|B Chain B, 1.65 Angstrom Crystal Structure Of The Cys71val Variant In
The Fungal Photoreceptor Vvd
Length = 149
Score = 89.7 bits (221), Expect = 5e-18, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Query: 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRD----PRAQRRHPL 108
T + ++ D D PI+Y ++ F TGY EVLGRNCRFLQ D P++ R++
Sbjct: 34 TSVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKY-- 91
Query: 109 VDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
VD ++ +R+ ++ E Q E++NFKK+G VN L + P+RD+ G + +G Q
Sbjct: 92 VDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQ 147
>pdb|2PD7|A Chain A, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light
Photoreceptor Vivid
pdb|2PD7|B Chain B, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light
Photoreceptor Vivid
pdb|2PDR|A Chain A, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDR|B Chain B, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDR|C Chain C, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDR|D Chain D, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDT|A Chain A, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
pdb|2PDT|B Chain B, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
pdb|2PDT|C Chain C, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
pdb|2PDT|D Chain D, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
Length = 149
Score = 89.4 bits (220), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Query: 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRD----PRAQRRHPL 108
T + ++ D D PI+Y ++ F TGY EVLGRNCRFLQ D P++ R++
Sbjct: 34 TSCALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKY-- 91
Query: 109 VDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
VD ++ +R+ ++ E Q E++NFKK+G VN L + P+RD+ G + +G Q
Sbjct: 92 VDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQ 147
>pdb|3ULF|A Chain A, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|B Chain B, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|C Chain C, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|D Chain D, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|E Chain E, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|F Chain F, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 170
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 9/109 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+FV+ DA PD PI+Y ++ F TGY D++LGRNCRFLQ P DP V
Sbjct: 51 NFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQ---------GPETDPRAVD 101
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
+IR + +G++ LLN+++DGT N +A +RD G + + +G+Q
Sbjct: 102 KIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQ 150
>pdb|3UE6|A Chain A, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|B Chain B, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|C Chain C, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|D Chain D, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|E Chain E, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|F Chain F, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 166
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 9/109 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+FV+ DA PD PI+Y ++ F TGY D++LGRNCRFLQ P DP V
Sbjct: 47 NFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQ---------GPETDPRAVD 97
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
+IR + +G++ LLN+++DGT N +A +RD G + + +G+Q
Sbjct: 98 KIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQ 146
>pdb|3P7N|A Chain A, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
pdb|3P7N|B Chain B, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
Length = 258
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 13/133 (9%)
Query: 37 DDTELSLKPG----LLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNC 92
DDT + ++P L +P + VV+D D P+I +N+ F TGY +E +GRNC
Sbjct: 52 DDTRVEVQPPAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNC 111
Query: 93 RFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRD 152
RFL +P + +IR+ + E E+LN+KKDGTP N + +API D
Sbjct: 112 RFLAGSG---------TEPWLTDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIYD 162
Query: 153 DDGTVTHIIGIQI 165
DD + + +G Q+
Sbjct: 163 DDDELLYFLGSQV 175
>pdb|2V1A|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Dark Structure Of Lov2 (404-546))
pdb|2V1B|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Light Structure Of Lov2 (404-546))
Length = 144
Score = 79.3 bits (194), Expect = 5e-15, Method: Composition-based stats.
Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+FV+ D PD PII+ + F T Y +E+LGRNCRFLQ P D V
Sbjct: 12 NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQ---------GPETDRATVR 62
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
+IR ++ E +L+N+ K G N L P+RD G V + IG+Q+
Sbjct: 63 KIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQL 112
>pdb|2V0U|A Chain A, N- And C-terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-induced Signal Transduction (cryo Dark
Structure Of Lov2 (404-546))
pdb|2V0W|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Cryo-
Trapped Light Structure Of Lov2 (404-546))
Length = 146
Score = 79.3 bits (194), Expect = 5e-15, Method: Composition-based stats.
Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+FV+ D PD PII+ + F T Y +E+LGRNCRFLQ P D V
Sbjct: 14 NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQ---------GPETDRATVR 64
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
+IR ++ E +L+N+ K G N L P+RD G V + IG+Q+
Sbjct: 65 KIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQL 114
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+FV+ D PD PII+ + F T Y +E+LGRNCRFLQ P D V
Sbjct: 23 NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQ---------GPETDRATVR 73
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
+IR ++ E +L+N+ K G N L P+RD G V + IG+Q+
Sbjct: 74 KIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQL 123
>pdb|4EEP|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2
Length = 115
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+FV++D PD PII+ + F T Y +E+LGRNCRFLQ P D V
Sbjct: 9 NFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQ---------GPETDQATVQ 59
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
+IR + + E +L+N+ K G N L P+RD G + + IG+Q+
Sbjct: 60 KIRDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQL 109
>pdb|3T50|A Chain A, X-Ray Structure Of The Lov Domain From The Lov-Hk Sensory
Protein From Brucella Abortus (Dark State).
pdb|3T50|B Chain B, X-Ray Structure Of The Lov Domain From The Lov-Hk Sensory
Protein From Brucella Abortus (Dark State)
Length = 128
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 39 TELSLKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYR 98
+E +L P L+ P P D PI++ N F TGY ADEV+GRNCRFLQ
Sbjct: 3 SEFTLMPMLITNPHLP-----------DNPIVFANPAFLKLTGYEADEVMGRNCRFLQGH 51
Query: 99 DPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVT 158
DP V I+ + +++N+KK G NRL ++P+ + +G +
Sbjct: 52 G---------TDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPVHNANGRLQ 102
Query: 159 HIIGIQI 165
H + Q+
Sbjct: 103 HFVSSQL 109
>pdb|4EEU|A Chain A, Crystal Structure Of Philov2.1
Length = 118
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
SFV+ D PD+PII+ + F T Y +E++GRN RFLQ P D V
Sbjct: 12 SFVITDPRLPDYPIIFASDGFLELTEYSREEIMGRNARFLQ---------GPETDQATVQ 62
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
+IR + + E +L+N+ K G N L L P+RD G + + IG+Q+
Sbjct: 63 KIRDAIRDQRETTVQLINYTKSGKKFWNLLHLQPVRDRKGGLQYFIGVQL 112
>pdb|2PR5|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
pdb|2PR5|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
pdb|2PR6|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
pdb|2PR6|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
Length = 132
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/107 (38%), Positives = 57/107 (53%), Gaps = 11/107 (10%)
Query: 58 VVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEI 117
V+ D D PI+YVN+ F TGY +E+LG+NCRFLQ + DP V I
Sbjct: 13 VITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKH---------TDPAEVDNI 63
Query: 118 RRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
R L+ ++ N+KKDGT N L + P+ +D T+ +GIQ
Sbjct: 64 RTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIEDK--TYFVGIQ 108
>pdb|4EER|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2 C426a Mutant
Length = 115
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+FV++D PD PII+ + F T Y +E+LGRN RFLQ P D V
Sbjct: 9 NFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNARFLQ---------GPETDQATVQ 59
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
+IR + + E +L+N+ K G N L P+RD G + + IG+Q+
Sbjct: 60 KIRDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQL 109
>pdb|4EES|A Chain A, Crystal Structure Of Ilov
pdb|4EET|B Chain B, Crystal Structure Of Ilov
pdb|4EET|D Chain D, Crystal Structure Of Ilov
Length = 115
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+FV+ D PD PII+ + F T Y +E+LGRN RFLQ P D V
Sbjct: 9 NFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQ---------GPETDQATVQ 59
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
+IR + + E +L+N+ K G N L L P+RD G + + IG+Q+
Sbjct: 60 KIRDAIRDQRETTVQLINYTKSGKKFWNLLHLQPVRDQKGELQYFIGVQL 109
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+FV+ D PD PII+ + F T Y +E+LGRN RFLQ P D V
Sbjct: 23 NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQ---------GPETDRATVR 73
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
+IR ++ E +L+N+ K G N L P+RD G V + IG+Q+
Sbjct: 74 KIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQL 123
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+FV+ D PD PII+ + F T Y +E+LGRN RFLQ P D V
Sbjct: 23 NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNMRFLQ---------GPETDRATVR 73
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
+IR ++ E +L+N+ K G N L P+RD G V + IG+Q+
Sbjct: 74 KIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQL 123
>pdb|3SW1|A Chain A, Structure Of A Full-Length Bacterial Lov Protein
pdb|3SW1|B Chain B, Structure Of A Full-Length Bacterial Lov Protein
Length = 162
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 9/107 (8%)
Query: 58 VVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEI 117
VVA+ D +IYVN FE TGY DE+L ++CRFLQ D D + + I
Sbjct: 39 VVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDR---------DQLGRARI 89
Query: 118 RRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
R+ + EG + L N++KDG+ N L + P++ D T+ IGIQ
Sbjct: 90 RKAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFIGIQ 136
>pdb|1G28|A Chain A, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|B Chain B, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|C Chain C, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|D Chain D, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1JNU|A Chain A, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
pdb|1JNU|B Chain B, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
pdb|1JNU|C Chain C, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
pdb|1JNU|D Chain D, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
Length = 104
Score = 70.5 bits (171), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
SFV+ D PD PII+ + F T Y +EVLG NCRFLQ R D V
Sbjct: 2 SFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRG---------TDRKAVQ 52
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
IR ++E + ++LN+ K G N L +RD++G V + IG+Q
Sbjct: 53 LIRDAVKEQRDVTVQVLNYTKGGRAFWNLFHLQVMRDENGDVQYFIGVQ 101
>pdb|4HIA|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HIA|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 176
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+ + D P+ P++ N F TGY ++LG NCRFLQ D AQ R +
Sbjct: 19 ALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQAR---------A 69
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
+IR L+ G E Q L N++ + P N L L P+ + +G Q
Sbjct: 70 DIRDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQ 118
>pdb|4HJ3|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HJ3|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 176
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+ + D P+ P++ N F TGY ++LG NCRFLQ D AQ R +
Sbjct: 19 ALTLVDMSLPEQPLVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQAR---------A 69
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
+IR L+ G E Q L N++ + P N L L P+ + +G Q
Sbjct: 70 DIRDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQ 118
>pdb|4HJ6|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HJ6|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 178
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+ + D P+ P++ N F TGY ++LG NCRFLQ D AQ R +
Sbjct: 21 ALTLVDMSLPEQPLVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQAR---------A 71
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
+IR L+ G E Q L N++ + P N L L P+ + +G Q
Sbjct: 72 DIRDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQ 120
>pdb|4HJ4|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HJ4|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HNB|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HNB|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 177
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+ + D P+ P++ N F TGY ++LG NCRFLQ D AQ R +
Sbjct: 20 ALTLVDMSLPEQPLVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQAR---------A 70
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
+IR L+ G E Q L N++ + P N L L P+ + +G Q
Sbjct: 71 DIRDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQ 119
>pdb|2GJ3|A Chain A, Crystal Structure Of The Fad-Containing Pas Domain Of The
Protein Nifl From Azotobacter Vinelandii.
pdb|2GJ3|B Chain B, Crystal Structure Of The Fad-Containing Pas Domain Of The
Protein Nifl From Azotobacter Vinelandii
Length = 120
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 69 IIYVNKVFEIFTGYRADEVLGRNCRFLQY-RDPRAQRRHPLVDPVVVSEIRRCLEEGIEF 127
I+Y N+ F TGY ++EVLG+N L PR +V + L + +
Sbjct: 27 ILYANRAFRTITGYGSEEVLGKNESILSNGTTPR----------LVYQALWGRLAQKKPW 76
Query: 128 QGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
G L+N +KD T + L +AP+ ++ G + +G+
Sbjct: 77 SGVLVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMH 113
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 19/199 (9%)
Query: 305 SRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLS 364
+RC F +++ + G+ + + D+ VL D +W V K+ P +GH +
Sbjct: 99 ARCLFGLGEVDDKIYVVAGKDLQTEASLDS-VLCYDPVAAKWSEV--KNLPIKVYGHNVI 155
Query: 365 SLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAP-PLPRSWHSSCIIEGSKL 423
S NG + G + N VF+ + K+ W ++ AP PRS I +G K+
Sbjct: 156 SHNGMIYCLGGKTDDKKCTNRVFI--YNPKKGDWKDL---APMKTPRSMFGVAIHKG-KI 209
Query: 424 VVSGGCTDAGVXXXXXXXXXXXXXKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLA 483
V++GG T+ G+ + E P S S + + S+Y GG A
Sbjct: 210 VIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYA------IGGFA 263
Query: 484 KSGHLRLRSGESYTIDLGD 502
++L S E ++ D
Sbjct: 264 ---MIQLESKEFAPTEVND 279
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 20/114 (17%)
Query: 453 EIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLEC 512
E+ +S P +R+ H+ + R L+ G K+ H L +++ D+ E W ++
Sbjct: 430 EVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGL--SDNWIFDMKTRE--WSMIKS 485
Query: 513 NAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEE 566
+ T R H A S+P G ++I GG G P+ L L + +EE
Sbjct: 486 LSHT------------RFRHSACSLPDGNVLILGGVTEG---PAML-LYNVTEE 523
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 313 AAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSS--PPGRWGHTLSSLN-GS 369
AGN + GG N +++ L++ + + + V SS P R HT ++++ +
Sbjct: 395 VAGNDVFYMGGS--NPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN 452
Query: 370 WLVVFGG--CGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSG 427
L++ GG QGL +D ++ D+ ++ + I+ R HS+C + +++ G
Sbjct: 453 QLLLIGGRKAPHQGL-SDNWIFDMKTREWSMIKSLSHT----RFRHSACSLPDGNVLILG 507
Query: 428 GCTD 431
G T+
Sbjct: 508 GVTE 511
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNG 368
F+ + N+L+L GG Q + D ++ D EW +KS R+ H+ SL
Sbjct: 445 FTTISRNNQLLLIGGRKAPHQGLSDNWI--FDMKTREWSM--IKSLSHTRFRHSACSLPD 500
Query: 369 SWLVVFGGC 377
+++ GG
Sbjct: 501 GNVLILGGV 509
>pdb|2L4R|A Chain A, Nmr Solution Structure Of The N-Terminal Pas Domain Of
Herg
Length = 135
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 57 FVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSE 116
F++A+A + +IY N F GY EV+ R C PR QR ++
Sbjct: 29 FIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQR-------RAAAQ 81
Query: 117 IRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHII 161
I + L E + E+ ++KDG+ + + + P++++DG V I
Sbjct: 82 IAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFI 126
>pdb|2L1M|A Chain A, Solution Structure Of The Eag Domain Of The Herg (Kv11.1)
K+ Channel
Length = 150
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 57 FVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSE 116
F++A+A + +IY N F GY EV+ R C PR QR ++
Sbjct: 29 FIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQR-------RAAAQ 81
Query: 117 IRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHII 161
I + L E + E+ ++KDG+ + + + P++++DG V I
Sbjct: 82 IAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFI 126
>pdb|2L0W|A Chain A, Solution Nmr Structure Of The N-Terminal Pas Domain Of
Herg Potassium Channel
Length = 138
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 57 FVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSE 116
F++A+A + +IY N F GY EV+ R C PR QR ++
Sbjct: 32 FIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQR-------RAAAQ 84
Query: 117 IRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHII 161
I + L E + E+ ++KDG+ + + + P++++DG V I
Sbjct: 85 IAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFI 129
>pdb|1BYW|A Chain A, Structure Of The N-Terminal Domain Of The Human-Erg
Potassium Channel
Length = 110
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 57 FVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGR--NCRFLQYRDPRAQRRHPLVDPVVV 114
F++A+A + +IY N F GY EV+ R C FL P
Sbjct: 4 FIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLH---------GPCTQRRAA 54
Query: 115 SEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHII 161
++I + L E + E+ ++KDG+ + + + P++++DG V I
Sbjct: 55 AQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFI 101
>pdb|1V9Y|A Chain A, Crystal Structure Of The Heme Pas Sensor Domain Of Ec Dos
(Ferric Form)
pdb|1V9Y|B Chain B, Crystal Structure Of The Heme Pas Sensor Domain Of Ec Dos
(Ferric Form)
pdb|1V9Z|A Chain A, Crystal Structure Of The Heme Pas Sensor Domain Of Ec Dos
(Ferrous Form)
pdb|1V9Z|B Chain B, Crystal Structure Of The Heme Pas Sensor Domain Of Ec Dos
(Ferrous Form)
pdb|1VB6|A Chain A, Crystal Structure Of The Heme Pas Sensor Domain Of Ec Dos
(Oxygen- Bound Form)
pdb|1VB6|B Chain B, Crystal Structure Of The Heme Pas Sensor Domain Of Ec Dos
(Oxygen- Bound Form)
Length = 167
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 48 LFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHP 107
+F+P + + A + + +++ N E GY+ +EV+G N L RD R HP
Sbjct: 41 IFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPA--HP 98
Query: 108 LVDPVVVSEIRRCLEEG-IEFQG---ELLNFKKDGTPLVNRLRLAPI 150
IR E G +G EL KKDG+ + R L+ +
Sbjct: 99 -------EYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV 138
>pdb|1S66|L Chain L, Crystal Structure Of Heme Domain Of Direct Oxygen Sensor
From E. Coli
pdb|1S66|U Chain U, Crystal Structure Of Heme Domain Of Direct Oxygen Sensor
From E. Coli
pdb|1S67|L Chain L, Crystal Structure Of Heme Domain Of Direct Oxygen Sensor
From E. Coli
pdb|1S67|U Chain U, Crystal Structure Of Heme Domain Of Direct Oxygen Sensor
From E. Coli
Length = 119
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 48 LFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHP 107
+F+P + + A + + +++ N E GY+ +EV+G N L RD R HP
Sbjct: 6 IFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPA--HP 63
Query: 108 LVDPVVVSEIRRCLEEG-IEFQG---ELLNFKKDGTPLVNRLRLAPI 150
IR E G +G EL KKDG+ + R L+ +
Sbjct: 64 -------EYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV 103
>pdb|2GLJ|A Chain A, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|B Chain B, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|C Chain C, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|D Chain D, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|E Chain E, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|F Chain F, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|G Chain G, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|H Chain H, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|I Chain I, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|J Chain J, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|K Chain K, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|L Chain L, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|M Chain M, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|N Chain N, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|O Chain O, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|P Chain P, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|Q Chain Q, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|R Chain R, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|S Chain S, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|T Chain T, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|U Chain U, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|V Chain V, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|W Chain W, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|X Chain X, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
Length = 461
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 37 DDTELSLKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQ 96
D EL L+ L Y + S V+ AFDP++P V E R LG+ F +
Sbjct: 319 DYDELKLRKAL--YNSEMLSSDVSAAFDPNYP-----NVME----KRNSAYLGKGIVFNK 367
Query: 97 YRDPRAQRRHPLVDPVVVSEIRRCL-EEGIEFQ 128
Y R + +P ++E+RR L +E + +Q
Sbjct: 368 YTGSRGKSGCNDANPEYIAELRRILSKESVNWQ 400
>pdb|3EWK|A Chain A, Structure Of The Redox Sensor Domain Of Methylococcus
Capsulatus (Bath) Mmos
Length = 227
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 69 IIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQ 128
I+Y N F + Y +E++G++ R + + ++ R + G +Q
Sbjct: 11 ILYANDNFCAVSRYGREELVGQDHRIVN---------SGYHGKAYIRDMWRTISRGNIWQ 61
Query: 129 GELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
GE N +KDGT + P+ D+ G I I+
Sbjct: 62 GEFCNRRKDGTRYWVDSTIVPLMDNAGKPRQYISIR 97
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 69 IIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQ 128
IIY N F+G E+LG++ L PL D ++ ++ L+ G +
Sbjct: 133 IIYANPALCRFSGMAEGELLGQSPSILD---------SPLADQETLAAMQEALQAGQPWS 183
Query: 129 GELLNFKKDG 138
G LLN ++ G
Sbjct: 184 GRLLNRRRTG 193
>pdb|1YYA|A Chain A, Crystal Structure Of Tt0473, Putative Triosephosphate
Isomerase From Thermus Thermophilus Hb8
pdb|1YYA|B Chain B, Crystal Structure Of Tt0473, Putative Triosephosphate
Isomerase From Thermus Thermophilus Hb8
Length = 250
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 22/107 (20%)
Query: 62 AFDPDFPIIYVNK--VFEIFTGYRADEVLGRN-----------------CRFLQYRDPRA 102
A P FPI+ V K + E GY A +V CR+
Sbjct: 38 AVLPAFPILPVAKEVLAETQVGYGAQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSER 97
Query: 103 QRRHPLVDPVVVSEIRRCLEEGIE---FQGELLNFKKDGTPLVNRLR 146
+R H D +V + +R LEEGI GE L ++ G + LR
Sbjct: 98 RRYHGETDALVAEKAKRLLEEGITPILCVGEPLEVREKGEAVPYTLR 144
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 209 ICGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGA 268
+C ++ L EV ++ + L V ++ R LT+ H+ K VC WG + +
Sbjct: 81 LCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGLSMNLS 140
Query: 269 L 269
L
Sbjct: 141 L 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,729,871
Number of Sequences: 62578
Number of extensions: 763922
Number of successful extensions: 1770
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1692
Number of HSP's gapped (non-prelim): 50
length of query: 625
length of database: 14,973,337
effective HSP length: 105
effective length of query: 520
effective length of database: 8,402,647
effective search space: 4369376440
effective search space used: 4369376440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)