Query 048754
Match_columns 625
No_of_seqs 410 out of 4519
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 12:48:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02193 nitrile-specifier pro 100.0 1.1E-40 2.4E-45 346.5 38.8 300 291-619 151-469 (470)
2 PLN02153 epithiospecifier prot 100.0 3E-40 6.4E-45 331.8 37.4 308 289-619 5-340 (341)
3 KOG4693 Uncharacterized conser 100.0 2.1E-38 4.6E-43 278.6 25.1 302 292-620 3-347 (392)
4 TIGR03547 muta_rot_YjhT mutatr 100.0 6.3E-35 1.4E-39 294.6 32.6 286 301-617 3-345 (346)
5 KOG4441 Proteins containing BT 100.0 3.6E-35 7.7E-40 308.1 29.4 289 292-623 261-551 (571)
6 KOG4441 Proteins containing BT 100.0 5.5E-35 1.2E-39 306.7 29.5 267 281-590 301-567 (571)
7 TIGR03548 mutarot_permut cycli 100.0 3.7E-34 8E-39 285.6 32.3 275 304-612 2-322 (323)
8 PLN02193 nitrile-specifier pro 100.0 7.1E-34 1.5E-38 295.6 34.6 282 311-623 116-415 (470)
9 PRK14131 N-acetylneuraminic ac 100.0 3.6E-34 7.7E-39 290.7 31.3 289 291-620 17-370 (376)
10 PHA02713 hypothetical protein; 100.0 2E-34 4.2E-39 304.5 27.9 250 283-574 274-541 (557)
11 KOG1230 Protein containing rep 100.0 5.3E-35 1.2E-39 272.7 20.6 257 352-624 61-346 (521)
12 PHA02713 hypothetical protein; 100.0 2E-33 4.3E-38 296.9 30.9 264 317-623 259-538 (557)
13 KOG0379 Kelch repeat-containin 100.0 3.1E-33 6.6E-38 289.3 30.7 297 298-620 53-359 (482)
14 PLN02153 epithiospecifier prot 100.0 8.9E-33 1.9E-37 277.7 31.1 257 344-623 7-289 (341)
15 KOG1230 Protein containing rep 100.0 3.8E-33 8.3E-38 260.3 20.4 257 301-575 62-349 (521)
16 PHA03098 kelch-like protein; P 100.0 1.7E-31 3.7E-36 285.7 29.8 251 286-574 269-519 (534)
17 KOG4693 Uncharacterized conser 100.0 7E-32 1.5E-36 237.6 20.0 253 345-623 3-281 (392)
18 KOG4152 Host cell transcriptio 100.0 5.7E-32 1.2E-36 258.4 21.0 305 288-620 14-365 (830)
19 KOG0379 Kelch repeat-containin 100.0 7.3E-31 1.6E-35 271.7 26.6 246 353-623 56-306 (482)
20 PHA03098 kelch-like protein; P 100.0 9E-30 2E-34 272.5 30.3 263 316-623 251-516 (534)
21 TIGR03547 muta_rot_YjhT mutatr 100.0 9E-30 2E-34 257.1 27.6 251 284-563 32-345 (346)
22 TIGR03548 mutarot_permut cycli 100.0 2E-29 4.4E-34 251.6 26.6 236 292-558 52-322 (323)
23 PRK14131 N-acetylneuraminic ac 100.0 2.5E-29 5.5E-34 255.2 27.6 258 284-572 53-374 (376)
24 PHA02790 Kelch-like protein; P 100.0 1.7E-27 3.7E-32 248.5 28.3 212 311-574 267-478 (480)
25 PHA02790 Kelch-like protein; P 100.0 5.2E-27 1.1E-31 244.9 27.5 206 367-623 270-475 (480)
26 KOG4152 Host cell transcriptio 100.0 8E-27 1.7E-31 223.3 23.2 264 284-563 60-362 (830)
27 COG3055 Uncharacterized protei 99.9 1.4E-20 2.9E-25 174.7 24.0 289 301-620 32-376 (381)
28 COG3055 Uncharacterized protei 99.8 9.3E-17 2E-21 149.4 20.1 255 280-563 57-373 (381)
29 KOG2437 Muskelin [Signal trans 99.7 4E-18 8.6E-23 163.8 0.7 311 289-618 237-612 (723)
30 PF13426 PAS_9: PAS domain; PD 99.5 1.3E-13 2.8E-18 112.9 13.3 104 54-169 1-104 (104)
31 KOG2437 Muskelin [Signal trans 99.5 3.8E-14 8.3E-19 136.8 4.9 210 344-563 239-470 (723)
32 PRK13560 hypothetical protein; 99.4 8.5E-13 1.8E-17 150.3 9.1 192 24-229 182-383 (807)
33 PF08448 PAS_4: PAS fold; Int 99.3 1.1E-11 2.4E-16 102.6 10.1 109 51-172 2-110 (110)
34 TIGR02040 PpsR-CrtJ transcript 99.3 7E-12 1.5E-16 131.5 6.8 172 51-238 3-193 (442)
35 TIGR02938 nifL_nitrog nitrogen 99.2 1.1E-11 2.3E-16 132.8 6.5 171 45-230 7-181 (494)
36 PRK09776 putative diguanylate 99.2 3.9E-12 8.5E-17 149.5 3.1 189 29-230 393-587 (1092)
37 PF00989 PAS: PAS fold; Inter 99.2 8.8E-11 1.9E-15 97.7 10.0 108 46-167 5-113 (113)
38 PRK09776 putative diguanylate 99.2 1.4E-11 3E-16 144.8 5.0 180 44-238 285-470 (1092)
39 PLN02772 guanylate kinase 99.1 5E-10 1.1E-14 109.6 10.6 94 523-622 19-112 (398)
40 PF13964 Kelch_6: Kelch motif 99.0 7.4E-10 1.6E-14 76.2 6.3 50 305-358 1-50 (50)
41 PF13964 Kelch_6: Kelch motif 99.0 1.2E-09 2.6E-14 75.1 6.5 49 357-410 1-50 (50)
42 TIGR02040 PpsR-CrtJ transcript 99.0 4.7E-10 1E-14 117.7 6.2 161 50-230 139-304 (442)
43 PRK13559 hypothetical protein; 99.0 3E-09 6.5E-14 108.7 11.6 117 50-175 49-165 (361)
44 PRK13560 hypothetical protein; 99.0 1E-09 2.2E-14 125.2 8.9 204 27-238 313-535 (807)
45 PF03089 RAG2: Recombination a 99.0 2.2E-08 4.8E-13 90.9 15.4 169 422-607 40-233 (337)
46 PRK13557 histidine kinase; Pro 99.0 1.7E-09 3.6E-14 117.2 9.8 122 43-175 31-152 (540)
47 PRK11091 aerobic respiration c 98.9 6E-10 1.3E-14 125.8 5.0 114 50-175 161-274 (779)
48 PRK11359 cyclic-di-GMP phospho 98.9 1.9E-09 4.2E-14 122.5 8.7 161 51-230 19-187 (799)
49 PF13415 Kelch_3: Galactose ox 98.9 4.9E-09 1.1E-13 71.6 6.2 47 368-418 1-49 (49)
50 PRK13558 bacterio-opsin activa 98.9 9.6E-09 2.1E-13 113.9 11.2 116 51-175 155-270 (665)
51 PF08447 PAS_3: PAS fold; Int 98.9 1.5E-08 3.3E-13 80.3 9.1 90 69-164 1-91 (91)
52 PF13415 Kelch_3: Galactose ox 98.9 8.3E-09 1.8E-13 70.4 6.3 48 420-471 1-49 (49)
53 PRK11359 cyclic-di-GMP phospho 98.8 8.7E-09 1.9E-13 117.2 8.2 135 28-175 122-256 (799)
54 PF13418 Kelch_4: Galactose ox 98.8 7.6E-09 1.7E-13 70.8 4.2 46 357-404 1-47 (49)
55 PLN02772 guanylate kinase 98.8 4.9E-08 1.1E-12 95.9 11.1 89 302-394 21-110 (398)
56 PF13418 Kelch_4: Galactose ox 98.8 9.8E-09 2.1E-13 70.3 4.5 46 409-456 1-46 (49)
57 PF13854 Kelch_5: Kelch motif 98.7 2.4E-08 5.2E-13 65.3 4.8 40 302-341 1-41 (42)
58 PRK10060 RNase II stability mo 98.7 2E-08 4.3E-13 110.3 7.1 114 50-175 117-231 (663)
59 PF01344 Kelch_1: Kelch motif; 98.7 3.2E-08 7E-13 67.1 4.7 45 357-404 1-46 (47)
60 PF03089 RAG2: Recombination a 98.7 1.1E-05 2.4E-10 73.8 21.7 162 317-488 40-234 (337)
61 PF07646 Kelch_2: Kelch motif; 98.6 1.1E-07 2.4E-12 64.8 6.5 45 357-404 1-48 (49)
62 PF07646 Kelch_2: Kelch motif; 98.6 8.3E-08 1.8E-12 65.5 5.7 44 305-350 1-46 (49)
63 PF01344 Kelch_1: Kelch motif; 98.6 3.7E-08 8.1E-13 66.8 3.1 44 305-350 1-44 (47)
64 PF13854 Kelch_5: Kelch motif 98.6 1.3E-07 2.9E-12 61.8 5.4 40 579-619 1-41 (42)
65 TIGR00229 sensory_box PAS doma 98.5 4.8E-07 1E-11 74.3 8.8 111 52-175 11-122 (124)
66 cd00130 PAS PAS domain; PAS mo 98.5 4.4E-06 9.6E-11 65.1 13.0 102 54-167 2-103 (103)
67 smart00612 Kelch Kelch domain. 98.4 4.6E-07 1E-11 61.4 5.0 46 370-419 1-46 (47)
68 PF12860 PAS_7: PAS fold 98.3 3.6E-06 7.9E-11 69.9 8.3 113 51-175 2-115 (115)
69 PF13596 PAS_10: PAS domain; P 98.3 4.5E-06 9.7E-11 68.2 8.6 99 53-168 8-106 (106)
70 PRK11073 glnL nitrogen regulat 98.2 2.4E-06 5.1E-11 86.9 7.2 111 44-175 9-119 (348)
71 PF14598 PAS_11: PAS domain; P 98.2 4.4E-05 9.5E-10 62.4 12.6 96 66-170 11-109 (111)
72 smart00612 Kelch Kelch domain. 98.2 3.9E-06 8.4E-11 56.8 5.3 46 422-472 1-46 (47)
73 PF07250 Glyoxal_oxid_N: Glyox 98.1 0.00012 2.6E-09 68.1 15.8 154 385-574 47-206 (243)
74 PRK11138 outer membrane biogen 98.1 0.0029 6.3E-08 65.3 26.9 180 291-509 46-231 (394)
75 TIGR02966 phoR_proteo phosphat 98.0 4.3E-06 9.4E-11 84.2 5.0 104 45-175 9-112 (333)
76 PRK11360 sensory histidine kin 98.0 2.4E-05 5.2E-10 86.0 10.0 110 51-175 269-379 (607)
77 KOG0501 K+-channel KCNQ [Inorg 98.0 1.8E-05 3.8E-10 79.2 7.7 100 66-172 39-138 (971)
78 PRK11138 outer membrane biogen 97.9 0.0062 1.3E-07 62.9 26.0 202 307-573 112-321 (394)
79 TIGR03300 assembly_YfgL outer 97.8 0.014 3.1E-07 59.9 26.7 158 309-509 59-216 (377)
80 PF07250 Glyoxal_oxid_N: Glyox 97.8 0.00034 7.3E-09 65.1 12.3 139 438-604 47-191 (243)
81 KOG1229 3'5'-cyclic nucleotide 97.8 9.3E-06 2E-10 78.3 1.3 103 50-163 163-265 (775)
82 TIGR01640 F_box_assoc_1 F-box 97.7 0.017 3.8E-07 54.5 23.6 198 333-563 15-227 (230)
83 COG5002 VicK Signal transducti 97.7 4.5E-05 9.8E-10 72.1 4.6 115 40-175 109-223 (459)
84 PF13360 PQQ_2: PQQ-like domai 97.6 0.05 1.1E-06 51.6 24.5 198 311-571 32-237 (238)
85 TIGR03300 assembly_YfgL outer 97.5 0.047 1E-06 56.0 24.3 198 311-573 101-306 (377)
86 TIGR02938 nifL_nitrog nitrogen 97.3 2.4E-05 5.3E-10 83.6 -2.9 133 27-175 111-256 (494)
87 PRK10820 DNA-binding transcrip 97.3 0.00036 7.7E-09 74.1 5.8 102 45-170 83-188 (520)
88 TIGR01640 F_box_assoc_1 F-box 97.2 0.14 3E-06 48.3 22.0 203 384-620 14-230 (230)
89 PF13360 PQQ_2: PQQ-like domai 97.1 0.21 4.5E-06 47.3 22.8 224 333-620 4-232 (238)
90 PRK13684 Ycf48-like protein; P 97.0 0.44 9.6E-06 47.7 25.9 244 291-602 76-322 (334)
91 PRK11006 phoR phosphate regulo 97.0 0.0003 6.6E-09 73.6 2.0 98 51-175 105-202 (430)
92 PF12937 F-box-like: F-box-lik 96.9 0.00063 1.4E-08 45.7 2.5 45 213-258 2-46 (47)
93 PLN00033 photosystem II stabil 96.8 0.73 1.6E-05 47.0 26.8 248 290-600 119-388 (398)
94 PF12768 Rax2: Cortical protei 96.7 0.064 1.4E-06 51.5 14.9 125 371-512 1-130 (281)
95 PF12768 Rax2: Cortical protei 96.5 0.16 3.4E-06 48.9 16.3 124 319-456 2-130 (281)
96 PRK11086 sensory histidine kin 96.4 0.0074 1.6E-07 65.4 7.8 100 52-175 229-331 (542)
97 cd00216 PQQ_DH Dehydrogenases 96.4 1.2 2.5E-05 47.5 24.0 189 307-510 53-273 (488)
98 COG2202 AtoS FOG: PAS/PAC doma 96.3 0.044 9.5E-07 49.4 10.8 112 50-173 118-231 (232)
99 PF10282 Lactonase: Lactonase, 96.1 1.7 3.7E-05 43.9 22.2 256 320-620 3-277 (345)
100 PF14870 PSII_BNR: Photosynthe 96.1 1.6 3.5E-05 42.6 24.0 247 291-601 47-294 (302)
101 COG3829 RocR Transcriptional r 96.0 0.0021 4.6E-08 65.5 0.6 153 53-228 10-166 (560)
102 PRK11388 DNA-binding transcrip 96.0 0.019 4.1E-07 63.3 7.7 99 51-169 210-308 (638)
103 COG3852 NtrB Signal transducti 95.9 0.03 6.4E-07 52.8 7.3 90 53-157 16-106 (363)
104 PRK11028 6-phosphogluconolacto 95.9 2.2 4.9E-05 42.7 25.3 152 317-502 3-157 (330)
105 COG3829 RocR Transcriptional r 95.8 0.0068 1.5E-07 61.9 3.2 105 50-175 123-227 (560)
106 KOG0281 Beta-TrCP (transducin 95.8 0.3 6.6E-06 46.6 13.5 41 217-258 84-124 (499)
107 cd00216 PQQ_DH Dehydrogenases 95.7 3.5 7.5E-05 43.9 27.9 226 312-574 106-384 (488)
108 KOG3558 Hypoxia-inducible fact 95.7 0.015 3.4E-07 60.3 5.4 97 65-170 282-379 (768)
109 COG5000 NtrY Signal transducti 95.6 0.012 2.5E-07 60.7 4.0 103 53-174 379-481 (712)
110 COG3290 CitA Signal transducti 95.6 0.0079 1.7E-07 61.4 2.7 107 44-175 217-325 (537)
111 PF00646 F-box: F-box domain; 95.5 0.0099 2.1E-07 40.0 2.3 45 212-257 3-47 (48)
112 PF13188 PAS_8: PAS domain; PD 95.4 0.012 2.6E-07 42.5 2.5 41 46-95 5-45 (64)
113 smart00256 FBOX A Receptor for 95.3 0.022 4.7E-07 36.7 3.3 39 215-254 1-39 (41)
114 PF07893 DUF1668: Protein of u 95.3 0.74 1.6E-05 46.2 15.6 128 362-513 70-217 (342)
115 PF00989 PAS: PAS fold; Inter 95.1 0.0092 2E-07 48.8 1.3 45 190-234 11-56 (113)
116 PF14870 PSII_BNR: Photosynthe 95.0 3.9 8.6E-05 39.9 22.9 247 289-603 4-253 (302)
117 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.7 7.5 0.00016 41.6 24.4 187 309-511 63-289 (527)
118 KOG3558 Hypoxia-inducible fact 94.5 0.15 3.3E-06 53.3 8.4 169 55-242 130-327 (768)
119 PF10282 Lactonase: Lactonase, 94.5 6 0.00013 39.9 27.0 291 280-621 14-325 (345)
120 COG1520 FOG: WD40-like repeat 94.4 6.6 0.00014 40.0 22.6 215 311-574 64-278 (370)
121 cd00094 HX Hemopexin-like repe 94.4 3.9 8.5E-05 37.2 18.3 157 311-502 12-176 (194)
122 KOG0310 Conserved WD40 repeat- 94.3 6.7 0.00015 39.7 19.2 217 315-605 79-302 (487)
123 smart00086 PAC Motif C-termina 94.2 0.31 6.7E-06 29.4 6.8 40 130-169 3-42 (43)
124 PRK15053 dpiB sensor histidine 94.1 0.096 2.1E-06 56.8 6.6 99 52-175 230-330 (545)
125 PRK13684 Ycf48-like protein; P 93.7 8.3 0.00018 38.6 25.9 244 289-602 33-279 (334)
126 PRK09959 hybrid sensory histid 93.7 0.099 2.1E-06 62.6 6.1 33 51-86 583-615 (1197)
127 COG2461 Uncharacterized conser 93.6 0.079 1.7E-06 51.7 4.0 108 50-175 296-403 (409)
128 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.6 12 0.00026 40.1 20.9 127 366-511 67-199 (527)
129 KOG2055 WD40 repeat protein [G 93.5 3.5 7.6E-05 41.4 14.9 149 315-502 224-375 (514)
130 PRK11028 6-phosphogluconolacto 93.5 9.1 0.0002 38.2 28.1 111 315-446 46-157 (330)
131 PF08670 MEKHLA: MEKHLA domain 93.5 1.3 2.8E-05 37.9 10.6 104 53-166 40-144 (148)
132 TIGR02373 photo_yellow photoac 92.7 0.87 1.9E-05 37.2 8.0 62 50-124 22-85 (124)
133 PF07893 DUF1668: Protein of u 92.5 7 0.00015 39.2 16.3 121 314-456 75-216 (342)
134 KOG3753 Circadian clock protei 92.4 0.37 8.1E-06 51.8 7.1 44 204-247 345-389 (1114)
135 TIGR02658 TTQ_MADH_Hv methylam 92.0 14 0.00031 36.9 26.1 117 316-448 13-139 (352)
136 KOG2055 WD40 repeat protein [G 92.0 12 0.00025 37.8 16.2 148 367-564 223-374 (514)
137 cd00094 HX Hemopexin-like repe 91.4 11 0.00023 34.3 18.0 154 368-563 16-174 (194)
138 PF13426 PAS_9: PAS domain; PD 91.4 0.085 1.8E-06 42.1 1.0 40 195-234 6-46 (104)
139 KOG2997 F-box protein FBX9 [Ge 91.2 0.095 2.1E-06 49.6 1.2 100 207-324 102-207 (366)
140 PF13088 BNR_2: BNR repeat-lik 90.9 16 0.00035 35.3 17.7 233 289-544 28-275 (275)
141 TIGR02800 propeller_TolB tol-p 90.7 23 0.00049 36.7 25.5 148 384-574 214-362 (417)
142 PRK05137 tolB translocation pr 90.6 24 0.00053 36.8 26.8 232 331-619 181-413 (435)
143 smart00091 PAS PAS domain. PAS 90.4 0.61 1.3E-05 31.5 4.8 41 53-96 10-50 (67)
144 TIGR03866 PQQ_ABC_repeats PQQ- 90.1 19 0.00041 34.9 26.1 142 317-501 2-145 (300)
145 PRK11388 DNA-binding transcrip 89.9 0.39 8.4E-06 53.0 4.7 87 143-229 143-253 (638)
146 PRK04043 tolB translocation pr 89.5 29 0.00062 36.1 22.6 185 384-619 213-401 (419)
147 PRK04792 tolB translocation pr 88.9 33 0.00072 36.0 22.5 148 384-574 242-390 (448)
148 PF02191 OLF: Olfactomedin-lik 88.3 24 0.00052 33.5 16.4 194 368-600 30-237 (250)
149 PRK10060 RNase II stability mo 88.1 0.17 3.6E-06 56.2 0.4 94 134-230 68-162 (663)
150 PF08450 SGL: SMP-30/Gluconola 87.8 25 0.00055 33.2 22.8 203 315-574 11-221 (246)
151 PF08448 PAS_4: PAS fold; Int 87.3 0.22 4.7E-06 40.2 0.5 49 193-241 8-57 (110)
152 PLN00033 photosystem II stabil 86.8 40 0.00087 34.6 27.7 136 289-454 73-214 (398)
153 PF08447 PAS_3: PAS fold; Int 86.6 0.24 5.2E-06 38.5 0.4 41 202-243 1-46 (91)
154 TIGR03866 PQQ_ABC_repeats PQQ- 86.4 33 0.00071 33.2 22.0 101 370-502 2-104 (300)
155 PF07310 PAS_5: PAS domain; I 85.7 7.3 0.00016 33.1 9.1 87 66-164 50-136 (137)
156 KOG3559 Transcriptional regula 85.5 5.4 0.00012 39.2 8.8 46 197-242 232-278 (598)
157 KOG0310 Conserved WD40 repeat- 84.8 49 0.0011 33.8 17.8 173 313-549 120-300 (487)
158 PF13596 PAS_10: PAS domain; P 84.4 0.51 1.1E-05 38.0 1.3 61 187-247 6-66 (106)
159 PF13088 BNR_2: BNR repeat-lik 84.4 40 0.00087 32.4 17.1 232 343-598 29-275 (275)
160 COG1520 FOG: WD40-like repeat 83.6 54 0.0012 33.3 24.5 218 315-574 111-332 (370)
161 PF14598 PAS_11: PAS domain; P 82.8 0.76 1.6E-05 37.5 1.7 49 197-245 9-60 (111)
162 PRK04792 tolB translocation pr 82.2 70 0.0015 33.6 21.5 187 382-620 196-384 (448)
163 KOG2120 SCF ubiquitin ligase, 81.8 1.2 2.6E-05 42.4 2.7 49 205-255 92-140 (419)
164 KOG3559 Transcriptional regula 81.5 3 6.6E-05 40.8 5.4 85 56-153 227-312 (598)
165 PRK04922 tolB translocation pr 81.1 75 0.0016 33.2 25.3 182 384-618 228-411 (433)
166 PF12217 End_beta_propel: Cata 81.0 49 0.0011 31.0 20.6 266 312-603 22-334 (367)
167 TIGR02800 propeller_TolB tol-p 79.9 78 0.0017 32.7 20.4 141 437-619 214-355 (417)
168 PF05096 Glu_cyclase_2: Glutam 78.8 41 0.00088 32.0 11.8 104 367-501 54-157 (264)
169 PRK05137 tolB translocation pr 78.2 92 0.002 32.5 23.9 194 332-574 226-420 (435)
170 PRK03629 tolB translocation pr 76.3 1E+02 0.0022 32.1 26.6 183 384-617 223-405 (429)
171 PRK00178 tolB translocation pr 75.5 1.1E+02 0.0023 31.9 27.4 148 384-574 223-371 (430)
172 KOG3560 Aryl-hydrocarbon recep 75.4 7.5 0.00016 40.0 6.3 90 66-165 292-381 (712)
173 COG3283 TyrR Transcriptional r 74.5 2.7 5.9E-05 41.1 2.9 47 46-97 84-130 (511)
174 PRK11091 aerobic respiration c 74.4 0.79 1.7E-05 52.2 -0.8 70 165-235 138-211 (779)
175 PRK11006 phoR phosphate regulo 74.4 0.042 9.2E-07 57.5 -10.3 68 163-231 79-150 (430)
176 PF13188 PAS_8: PAS domain; PD 71.3 0.99 2.1E-05 32.3 -0.7 27 189-216 10-36 (64)
177 PF08450 SGL: SMP-30/Gluconola 70.2 98 0.0021 29.1 15.8 153 420-621 11-167 (246)
178 COG2706 3-carboxymuconate cycl 70.0 1.2E+02 0.0026 30.0 25.2 259 320-622 6-278 (346)
179 KOG4649 PQQ (pyrrolo-quinoline 69.8 1E+02 0.0022 29.1 12.9 77 415-512 16-92 (354)
180 PRK04922 tolB translocation pr 69.4 1.5E+02 0.0032 30.9 20.6 140 437-619 228-369 (433)
181 cd00200 WD40 WD40 domain, foun 69.3 1E+02 0.0022 28.9 23.3 63 368-446 62-124 (289)
182 TIGR03074 PQQ_membr_DH membran 69.3 2E+02 0.0044 32.5 22.8 188 309-511 188-432 (764)
183 KOG0647 mRNA export protein (c 68.7 1.1E+02 0.0025 29.4 11.8 139 418-605 81-221 (347)
184 PRK04043 tolB translocation pr 68.6 1.5E+02 0.0033 30.7 23.9 187 333-564 214-400 (419)
185 KOG4649 PQQ (pyrrolo-quinoline 68.5 1.1E+02 0.0023 28.9 12.9 97 385-508 34-130 (354)
186 PRK00178 tolB translocation pr 67.4 1.6E+02 0.0035 30.6 22.2 140 437-619 223-364 (430)
187 PRK02889 tolB translocation pr 66.2 1.7E+02 0.0037 30.4 24.8 182 384-617 220-402 (427)
188 PF08446 PAS_2: PAS fold; Int 65.6 10 0.00023 30.7 4.2 39 57-97 18-59 (110)
189 PF02191 OLF: Olfactomedin-lik 64.7 1.3E+02 0.0028 28.6 15.7 161 302-479 65-236 (250)
190 PF05096 Glu_cyclase_2: Glutam 61.2 1.5E+02 0.0034 28.2 13.0 103 419-563 54-156 (264)
191 KOG1645 RING-finger-containing 60.6 1.4E+02 0.003 30.1 11.2 112 384-513 216-327 (463)
192 TIGR02966 phoR_proteo phosphat 59.5 3.6 7.9E-05 40.9 0.6 43 190-232 16-59 (333)
193 KOG3561 Aryl-hydrocarbon recep 59.5 4.7 0.0001 44.4 1.4 42 53-97 104-145 (803)
194 smart00284 OLF Olfactomedin-li 59.4 1.6E+02 0.0036 27.9 19.6 76 369-455 35-113 (255)
195 cd00130 PAS PAS domain; PAS mo 59.3 5.3 0.00012 29.3 1.4 39 197-235 9-48 (103)
196 TIGR00229 sensory_box PAS doma 59.1 6 0.00013 30.7 1.8 41 194-234 17-58 (124)
197 PRK03629 tolB translocation pr 58.9 2.3E+02 0.005 29.5 22.2 198 371-620 167-365 (429)
198 PF08268 FBA_3: F-box associat 57.7 1.1E+02 0.0024 25.4 9.7 83 313-402 3-88 (129)
199 KOG1645 RING-finger-containing 57.3 1.4E+02 0.0029 30.2 10.5 169 314-501 245-419 (463)
200 PF15525 DUF4652: Domain of un 57.3 1.4E+02 0.0031 26.6 11.6 72 326-403 82-157 (200)
201 PRK02889 tolB translocation pr 55.1 2.7E+02 0.0057 29.0 19.8 185 384-619 176-361 (427)
202 cd00200 WD40 WD40 domain, foun 52.4 2E+02 0.0043 26.7 27.1 22 368-394 104-125 (289)
203 PLN02919 haloacid dehalogenase 51.4 4.9E+02 0.011 31.0 27.5 165 368-564 694-888 (1057)
204 PRK13557 histidine kinase; Pro 50.7 7.7 0.00017 41.8 1.4 35 199-233 52-87 (540)
205 PF03178 CPSF_A: CPSF A subuni 50.7 2.6E+02 0.0057 27.6 13.3 103 384-513 62-169 (321)
206 TIGR03074 PQQ_membr_DH membran 50.7 4.2E+02 0.0092 30.0 25.3 130 366-511 192-354 (764)
207 PRK11073 glnL nitrogen regulat 50.3 5.1 0.00011 40.4 -0.1 47 184-230 11-58 (348)
208 PF09884 DUF2111: Uncharacteri 49.5 1E+02 0.0022 23.2 6.4 45 116-164 36-80 (84)
209 PRK15053 dpiB sensor histidine 49.3 16 0.00034 39.5 3.5 41 190-230 232-275 (545)
210 PRK10820 DNA-binding transcrip 48.7 5.1 0.00011 42.9 -0.4 47 186-232 86-133 (520)
211 PF02897 Peptidase_S9_N: Proly 48.6 3.2E+02 0.007 28.1 21.9 242 333-621 151-407 (414)
212 KOG0649 WD40 repeat protein [G 47.3 2.5E+02 0.0053 26.4 16.4 85 397-502 100-187 (325)
213 KOG0289 mRNA splicing factor [ 45.2 3.6E+02 0.0077 27.6 17.2 121 361-513 351-472 (506)
214 PLN00181 protein SPA1-RELATED; 45.0 5.3E+02 0.011 29.5 24.3 62 368-447 587-650 (793)
215 KOG3881 Uncharacterized conser 44.6 3.4E+02 0.0075 27.3 11.1 112 316-446 161-278 (412)
216 PF07433 DUF1513: Protein of u 43.2 3.3E+02 0.0072 26.7 13.2 130 461-622 3-138 (305)
217 COG4880 Secreted protein conta 42.9 3.9E+02 0.0084 27.4 13.2 171 302-512 425-599 (603)
218 PF08348 PAS_6: YheO-like PAS 42.8 28 0.0006 28.6 3.1 42 130-173 71-112 (118)
219 KOG4378 Nuclear protein COP1 [ 42.5 4.2E+02 0.0091 27.7 14.5 212 292-564 61-280 (673)
220 PF08268 FBA_3: F-box associat 42.5 2E+02 0.0043 23.9 11.7 71 492-575 19-89 (129)
221 PF02239 Cytochrom_D1: Cytochr 41.9 3.9E+02 0.0085 27.2 13.8 172 384-600 16-189 (369)
222 KOG3881 Uncharacterized conser 41.0 3.9E+02 0.0085 26.9 11.3 29 422-454 162-190 (412)
223 COG5184 ATS1 Alpha-tubulin sup 40.7 4.4E+02 0.0096 27.4 16.0 256 317-600 69-365 (476)
224 PTZ00421 coronin; Provisional 40.3 4.9E+02 0.011 27.8 22.1 106 370-501 139-245 (493)
225 PF14827 Cache_3: Sensory doma 40.2 1.5E+02 0.0033 24.0 7.2 75 53-166 38-112 (116)
226 TIGR02658 TTQ_MADH_Hv methylam 38.3 4.3E+02 0.0094 26.6 25.1 75 313-394 55-138 (352)
227 KOG0772 Uncharacterized conser 37.3 5.2E+02 0.011 27.2 19.9 73 533-617 368-444 (641)
228 PTZ00421 coronin; Provisional 37.1 5.4E+02 0.012 27.4 22.7 61 422-502 139-199 (493)
229 KOG0649 WD40 repeat protein [G 36.7 3.6E+02 0.0079 25.3 17.4 76 355-447 113-188 (325)
230 COG2202 AtoS FOG: PAS/PAC doma 36.5 63 0.0014 27.9 5.0 149 66-227 8-160 (232)
231 KOG0278 Serine/threonine kinas 35.9 3.6E+02 0.0077 25.5 9.2 63 532-605 228-290 (334)
232 KOG3753 Circadian clock protei 34.9 72 0.0016 35.4 5.4 72 65-145 339-413 (1114)
233 KOG3560 Aryl-hydrocarbon recep 34.4 27 0.00059 36.1 2.1 52 43-97 110-161 (712)
234 COG3290 CitA Signal transducti 33.3 20 0.00044 37.5 1.1 34 197-230 232-268 (537)
235 PLN02919 haloacid dehalogenase 33.3 9E+02 0.019 28.8 31.1 73 533-619 808-889 (1057)
236 PLN00181 protein SPA1-RELATED; 32.3 8.1E+02 0.018 28.0 23.6 101 370-502 546-649 (793)
237 PRK10841 hybrid sensory kinase 31.9 79 0.0017 36.8 5.7 36 44-84 336-372 (924)
238 PF03178 CPSF_A: CPSF A subuni 31.8 5.1E+02 0.011 25.5 14.3 140 421-601 42-190 (321)
239 PRK13559 hypothetical protein; 31.7 25 0.00054 35.5 1.5 32 200-231 66-98 (361)
240 KOG2066 Vacuolar assembly/sort 31.2 7.9E+02 0.017 27.5 15.3 74 306-393 39-113 (846)
241 KOG3561 Aryl-hydrocarbon recep 30.5 19 0.00041 39.9 0.4 48 189-236 104-152 (803)
242 PF12860 PAS_7: PAS fold 30.4 19 0.00042 29.2 0.3 32 189-220 4-35 (115)
243 KOG3926 F-box proteins [Amino 29.0 59 0.0013 30.7 3.2 56 208-264 198-254 (332)
244 PRK01742 tolB translocation pr 28.7 6.8E+02 0.015 26.0 20.9 165 384-604 228-393 (429)
245 COG4447 Uncharacterized protei 28.2 4E+02 0.0086 25.7 8.3 157 344-546 32-188 (339)
246 KOG2321 WD40 repeat protein [G 27.5 7.1E+02 0.015 26.7 10.6 125 409-563 133-257 (703)
247 PTZ00420 coronin; Provisional 26.5 8.7E+02 0.019 26.5 21.4 64 368-448 137-200 (568)
248 PF13540 RCC1_2: Regulator of 25.2 1E+02 0.0022 18.0 2.7 18 584-601 8-25 (30)
249 KOG1229 3'5'-cyclic nucleotide 24.3 16 0.00034 36.6 -1.4 42 190-232 167-209 (775)
250 PF02897 Peptidase_S9_N: Proly 23.5 8.1E+02 0.018 25.1 18.4 196 384-618 150-357 (414)
251 PF15525 DUF4652: Domain of un 22.7 5.7E+02 0.012 23.0 11.1 76 428-512 79-157 (200)
252 PF05262 Borrelia_P83: Borreli 22.4 3.7E+02 0.008 28.4 7.9 47 434-486 372-418 (489)
253 KOG2110 Uncharacterized conser 22.4 4.1E+02 0.0089 26.6 7.6 67 366-446 95-162 (391)
254 PF02239 Cytochrom_D1: Cytochr 22.4 8.3E+02 0.018 24.8 15.8 180 333-564 17-202 (369)
255 KOG0772 Uncharacterized conser 22.0 9.6E+02 0.021 25.4 19.0 123 408-563 315-444 (641)
256 smart00155 PLDc Phospholipase 21.7 96 0.0021 17.6 2.1 23 583-605 3-25 (28)
257 TIGR02608 delta_60_rpt delta-6 21.6 2.1E+02 0.0046 19.8 4.1 36 586-622 4-39 (55)
258 PF14830 Haemocyan_bet_s: Haem 21.5 80 0.0017 25.1 2.2 25 594-618 37-61 (103)
259 KOG2048 WD40 repeat protein [G 21.4 1.1E+03 0.024 25.8 20.8 252 309-621 249-508 (691)
260 PF06433 Me-amine-dh_H: Methyl 21.2 8.4E+02 0.018 24.4 17.7 261 316-621 3-280 (342)
261 COG4880 Secreted protein conta 21.0 9.3E+02 0.02 24.8 13.9 80 306-394 377-459 (603)
262 PF11768 DUF3312: Protein of u 20.4 1.1E+03 0.023 25.4 10.6 106 329-455 233-339 (545)
263 PRK01742 tolB translocation pr 20.1 9.8E+02 0.021 24.8 20.0 105 383-511 183-288 (429)
No 1
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.1e-40 Score=346.50 Aligned_cols=300 Identities=25% Similarity=0.372 Sum_probs=241.8
Q ss_pred CeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCC-CCCCeEEEeccCCCCceEEcccCC-CCC-CccceeEEEEc
Q 048754 291 VCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQ-PMDDTFVLNLDAANPEWRRVSVKS-SPP-GRWGHTLSSLN 367 (625)
Q Consensus 291 ~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~-~~~~~~~~~~~~~~~~W~~~~~~~-~p~-~r~~~~~~~~~ 367 (625)
.+|.++...+..|.+|.+|+++.++++|||+||...... ..+++|+||+.+ ++|..+.... .|. .|.+|+++++
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~--~~W~~~~~~g~~P~~~~~~~~~v~~- 227 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLET--RTWSISPATGDVPHLSCLGVRMVSI- 227 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCC--CEEEeCCCCCCCCCCcccceEEEEE-
Confidence 799999877778899999999999999999999854333 457899999988 7999875432 343 3567887777
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCC-CCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGG-APPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
+++|||+||......++++|+||+.++ +|+.++.+ ..|.+|.+|+++.. +++|||+||..... .+++++.||+.+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~--~W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~~~-~~~~~~~yd~~t 303 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTN--EWKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSATA-RLKTLDSYNIVD 303 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCC--EEEEcCcCCCCCCCccceEEEEE-CCEEEEECCCCCCC-CcceEEEEECCC
Confidence 668999999987777899999999999 99998754 33789999999887 66999999986543 568999999877
Q ss_pred CCCceEEcCCC-CCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC
Q 048754 447 DKPMWREIPTS-WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 447 ~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~ 525 (625)
.+ |+.++.. .+|.+|.+|+++++++ ++|++||..... .+++++||+. +.+|+++..+ +..
T Consensus 304 ~~--W~~~~~~~~~~~~R~~~~~~~~~g-kiyviGG~~g~~-----~~dv~~yD~~--t~~W~~~~~~---------g~~ 364 (470)
T PLN02193 304 KK--WFHCSTPGDSFSIRGGAGLEVVQG-KVWVVYGFNGCE-----VDDVHYYDPV--QDKWTQVETF---------GVR 364 (470)
T ss_pred CE--EEeCCCCCCCCCCCCCcEEEEECC-cEEEEECCCCCc-----cCceEEEECC--CCEEEEeccC---------CCC
Confidence 66 9998753 3567899999998876 999999975421 5899999999 6799999866 456
Q ss_pred CCCccceEEEEecCCEEEEEecCCCC--------CCCCCcEEEEeCCCCCCCeEEEcCCC---CCCCCCCcceE--EEE-
Q 048754 526 PPPRLDHVAVSMPCGRIIIFGGSIAG--------LHSPSQLFLLDPSEEKPSWRILNVPG---QPPKFAWGHST--CVV- 591 (625)
Q Consensus 526 p~~r~~~~~~~~~~~~l~v~GG~~~~--------~~~~~~v~~~d~~~~~~~W~~v~~~~---~~p~~r~~~~~--~~~- 591 (625)
|.+|..|+++++ +++|||+||.... ....+++|+||+ .+++|+.+...+ ..|.+|..|++ ..+
T Consensus 365 P~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~--~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~ 441 (470)
T PLN02193 365 PSERSVFASAAV-GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT--ETLQWERLDKFGEEEETPSSRGWTASTTGTID 441 (470)
T ss_pred CCCcceeEEEEE-CCEEEEECCccCCccccccCccceeccEEEEEc--CcCEEEEcccCCCCCCCCCCCccccceeeEEc
Confidence 889999999888 8999999997531 123579999999 799999997544 35777766643 233
Q ss_pred CCcEEEEEcCcCCCCCccCceEEEEccC
Q 048754 592 GGTRVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 592 ~~~~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
.++.|++|||.+..+.+++|+|+|++++
T Consensus 442 ~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 442 GKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred CCceEEEEcCCCCccccccceEEEecCC
Confidence 3456999999998878899999998875
No 2
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=3e-40 Score=331.83 Aligned_cols=308 Identities=23% Similarity=0.360 Sum_probs=237.4
Q ss_pred ccCeeEEeeec-CCCCCCCcccceEEECCEEEEEcccCCC-CCCCCCeEEEeccCCCCceEEcccCC-CCCC-ccceeEE
Q 048754 289 EAVCWRKFTVR-GAVEPSRCNFSACAAGNRLVLFGGEGVN-MQPMDDTFVLNLDAANPEWRRVSVKS-SPPG-RWGHTLS 364 (625)
Q Consensus 289 ~~~~W~~~~~~-~~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~~~~~~~~~~W~~~~~~~-~p~~-r~~~~~~ 364 (625)
....|.++... +..|.||.+|++++++++|||+||.... ....+++|+||+.+ ++|.++.... .|.. +.+|+++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~p~~~~~~~~~~ 82 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNT--HTWSIAPANGDVPRISCLGVRMV 82 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCC--CEEEEcCccCCCCCCccCceEEE
Confidence 45779998764 3478899999999999999999998543 33467999999988 7999875332 2332 3467777
Q ss_pred EEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCC---CCCCCCccceEEEEcCCEEEEEcCcCCCC-----cee
Q 048754 365 SLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGG---APPLPRSWHSSCIIEGSKLVVSGGCTDAG-----VLL 436 (625)
Q Consensus 365 ~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~---~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-----~~~ 436 (625)
++ +++||+|||......++++++||+.++ +|..++.+ ..|.+|..|+++.. +++|||+||....+ ..+
T Consensus 83 ~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 83 AV-GTKLYIFGGRDEKREFSDFYSYDTVKN--EWTFLTKLDEEGGPEARTFHSMASD-ENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EE-CCEEEEECCCCCCCccCcEEEEECCCC--EEEEeccCCCCCCCCCceeeEEEEE-CCEEEEECCccCCCccCCCccc
Confidence 77 568999999977777889999999999 99988754 23789999999887 56999999986432 235
Q ss_pred ceEEEEecCCCCCceEEcCCCC-CCCCCCcceEEEECCcEEEEEcCCcCC----CCcccccCceEEEEcCCCCCceeEee
Q 048754 437 SDTYLLDLTTDKPMWREIPTSW-SPPSRLGHSLSVYGRTKVLMFGGLAKS----GHLRLRSGESYTIDLGDEEPQWKQLE 511 (625)
Q Consensus 437 ~~~~~~d~~~~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~l~v~GG~~~~----~~~~~~~~~~~~~d~~~~~~~W~~~~ 511 (625)
+++++||+.+++ |+.++... .|.+|.+|+++++++ +||++||.... +......+++++||+. +.+|+++.
T Consensus 159 ~~v~~yd~~~~~--W~~l~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~--~~~W~~~~ 233 (341)
T PLN02153 159 RTIEAYNIADGK--WVQLPDPGENFEKRGGAGFAVVQG-KIWVVYGFATSILPGGKSDYESNAVQFFDPA--SGKWTEVE 233 (341)
T ss_pred ceEEEEECCCCe--EeeCCCCCCCCCCCCcceEEEECC-eEEEEeccccccccCCccceecCceEEEEcC--CCcEEecc
Confidence 789999987766 99998643 457899999988877 99999997532 1111125789999999 77999997
Q ss_pred eccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCC--------CCCCCCcEEEEeCCCCCCCeEEEcCCCCC--CC
Q 048754 512 CNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIA--------GLHSPSQLFLLDPSEEKPSWRILNVPGQP--PK 581 (625)
Q Consensus 512 ~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~~~~v~~~d~~~~~~~W~~v~~~~~~--p~ 581 (625)
.. +..|.+|..|+++++ +++|||+||... .....+++|+||+ .+++|+.+...+.+ |.
T Consensus 234 ~~---------g~~P~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~--~~~~W~~~~~~~~~~~pr 301 (341)
T PLN02153 234 TT---------GAKPSARSVFAHAVV-GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDT--ETLVWEKLGECGEPAMPR 301 (341)
T ss_pred cc---------CCCCCCcceeeeEEE-CCEEEEECcccCCccccccccccccccEEEEEc--CccEEEeccCCCCCCCCC
Confidence 65 456889999999888 899999999742 1223579999999 79999998754444 44
Q ss_pred CCCcceEEEEC-CcEEEEEcCcCCCCCccCceEEEEccC
Q 048754 582 FAWGHSTCVVG-GTRVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 582 ~r~~~~~~~~~-~~~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
.+..++++.+. +++||||||.++.+..++|+|.|+..+
T Consensus 302 ~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~~ 340 (341)
T PLN02153 302 GWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVNS 340 (341)
T ss_pred ccccccccccCCcceEEEEcCcCCCCccccceEEEeccc
Confidence 45445555444 469999999988777899999998754
No 3
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=2.1e-38 Score=278.61 Aligned_cols=302 Identities=28% Similarity=0.484 Sum_probs=241.2
Q ss_pred eeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCC----CCCeEEEeccCCCCceEEcccC-----------CCCC
Q 048754 292 CWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQP----MDDTFVLNLDAANPEWRRVSVK-----------SSPP 356 (625)
Q Consensus 292 ~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~----~~~~~~~~~~~~~~~W~~~~~~-----------~~p~ 356 (625)
.|..-- +--|.|..|+++.+++.||-|||+.....+ --|+.++|..+ .+|.++++. ..|-
T Consensus 3 ~WTVHL---eGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~--~RWtk~pp~~~ka~i~~~yp~VPy 77 (392)
T KOG4693|consen 3 TWTVHL---EGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAEN--YRWTKMPPGITKATIESPYPAVPY 77 (392)
T ss_pred eEEEEe---cCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccc--eeEEecCcccccccccCCCCccch
Confidence 465543 334569999999999999999998544221 22578888777 899998641 1245
Q ss_pred CccceeEEEEcCCEEEEEccCCC-CCccccEEEEECCCCCCEEEEcC-CCCCCCCCccceEEEEcCCEEEEEcCcCCC-C
Q 048754 357 GRWGHTLSSLNGSWLVVFGGCGR-QGLLNDVFVLDLDAKQPTWIEVS-GGAPPLPRSWHSSCIIEGSKLVVSGGCTDA-G 433 (625)
Q Consensus 357 ~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~t~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~-~ 433 (625)
.|++|+.+.+. +++||.||.+. .+..|-+|.||++++ +|.+.. .+..|.+|.+|++|++ ++.+|||||+.+. .
T Consensus 78 qRYGHtvV~y~-d~~yvWGGRND~egaCN~Ly~fDp~t~--~W~~p~v~G~vPgaRDGHsAcV~-gn~MyiFGGye~~a~ 153 (392)
T KOG4693|consen 78 QRYGHTVVEYQ-DKAYVWGGRNDDEGACNLLYEFDPETN--VWKKPEVEGFVPGARDGHSACVW-GNQMYIFGGYEEDAQ 153 (392)
T ss_pred hhcCceEEEEc-ceEEEEcCccCcccccceeeeeccccc--cccccceeeecCCccCCceeeEE-CcEEEEecChHHHHH
Confidence 69999999985 48999999975 678899999999999 999665 4577999999999999 7799999998654 4
Q ss_pred ceeceEEEEecCCCCCceEEcCCCCC-CCCCCcceEEEECCcEEEEEcCCcCCCC-----cccccCceEEEEcCCCCCce
Q 048754 434 VLLSDTYLLDLTTDKPMWREIPTSWS-PPSRLGHSLSVYGRTKVLMFGGLAKSGH-----LRLRSGESYTIDLGDEEPQW 507 (625)
Q Consensus 434 ~~~~~~~~~d~~~~~~~W~~~~~~~~-p~~r~~~~~~~~~~~~l~v~GG~~~~~~-----~~~~~~~~~~~d~~~~~~~W 507 (625)
..+++++++|+++-+ |..+...+. |.-|..|+++++++ .+|||||..+... -..+.+.+..+|+. +..|
T Consensus 154 ~FS~d~h~ld~~Tmt--Wr~~~Tkg~PprwRDFH~a~~~~~-~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~--T~aW 228 (392)
T KOG4693|consen 154 RFSQDTHVLDFATMT--WREMHTKGDPPRWRDFHTASVIDG-MMYIFGGRSDESGPFHSIHEQYCDTIMALDLA--TGAW 228 (392)
T ss_pred hhhccceeEecccee--eeehhccCCCchhhhhhhhhhccc-eEEEeccccccCCCccchhhhhcceeEEEecc--cccc
Confidence 578899999987755 999987554 45688899999986 9999999875321 12345788889999 6699
Q ss_pred eEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCC-CCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcc
Q 048754 508 KQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLH-SPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGH 586 (625)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~-~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~ 586 (625)
...... +..|..|..|++.+. +++||||||++..-. -++|+|+||+ .+..|+.+...|..|.+|..+
T Consensus 229 ~r~p~~---------~~~P~GRRSHS~fvY-ng~~Y~FGGYng~ln~HfndLy~FdP--~t~~W~~I~~~Gk~P~aRRRq 296 (392)
T KOG4693|consen 229 TRTPEN---------TMKPGGRRSHSTFVY-NGKMYMFGGYNGTLNVHFNDLYCFDP--KTSMWSVISVRGKYPSARRRQ 296 (392)
T ss_pred ccCCCC---------CcCCCcccccceEEE-cceEEEecccchhhhhhhcceeeccc--ccchheeeeccCCCCCcccce
Confidence 987655 467899999999999 999999999975322 3799999999 799999999999999999999
Q ss_pred eEEEECCcEEEEEcCcCCC-----------C-------CccCceEEEEccCC
Q 048754 587 STCVVGGTRVLVLGGHTGE-----------E-------WVLNELHELCLASK 620 (625)
Q Consensus 587 ~~~~~~~~~i~i~GG~~~~-----------~-------~~~~d~~~~~~~~~ 620 (625)
++++.++ ++|+|||..+. + --++|+.+||..++
T Consensus 297 C~~v~g~-kv~LFGGTsP~~~~~~Spt~~~G~~~~~~LiD~SDLHvLDF~Ps 347 (392)
T KOG4693|consen 297 CSVVSGG-KVYLFGGTSPLPCHPLSPTNYNGMISPSGLIDLSDLHVLDFAPS 347 (392)
T ss_pred eEEEECC-EEEEecCCCCCCCCCCCccccCCCCCcccccccccceeeecChh
Confidence 9999985 99999997651 0 02678888887654
No 4
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=6.3e-35 Score=294.63 Aligned_cols=286 Identities=17% Similarity=0.261 Sum_probs=213.9
Q ss_pred CCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCC-CCccceeEEEEcCCEEEEEccCCC
Q 048754 301 AVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSP-PGRWGHTLSSLNGSWLVVFGGCGR 379 (625)
Q Consensus 301 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p-~~r~~~~~~~~~~~~iyv~GG~~~ 379 (625)
++|.+|..+++++++++|||+||... +++|+||+....++|.++ +++| .+|..|+++++ +++|||+||...
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~~-----~~~~~~d~~~~~~~W~~l--~~~p~~~R~~~~~~~~-~~~iYv~GG~~~ 74 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSAG-----TSWYKLDLKKPSKGWQKI--ADFPGGPRNQAVAAAI-DGKLYVFGGIGK 74 (346)
T ss_pred CCCccccCceEEEECCEEEEEccccC-----CeeEEEECCCCCCCceEC--CCCCCCCcccceEEEE-CCEEEEEeCCCC
Confidence 57778998888899999999999732 568999986555799987 6677 58998888877 568999999853
Q ss_pred C------CccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCC--------------------
Q 048754 380 Q------GLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAG-------------------- 433 (625)
Q Consensus 380 ~------~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-------------------- 433 (625)
. ..++++|+||+.++ +|++++. ..|.+|.+|+++...+++||++||.....
T Consensus 75 ~~~~~~~~~~~~v~~Yd~~~~--~W~~~~~-~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (346)
T TIGR03547 75 ANSEGSPQVFDDVYRYDPKKN--SWQKLDT-RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDK 151 (346)
T ss_pred CCCCCcceecccEEEEECCCC--EEecCCC-CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhh
Confidence 2 24789999999999 9999974 33677888877733367999999975320
Q ss_pred -------------ceeceEEEEecCCCCCceEEcCCCCCCC-CCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEE
Q 048754 434 -------------VLLSDTYLLDLTTDKPMWREIPTSWSPP-SRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTID 499 (625)
Q Consensus 434 -------------~~~~~~~~~d~~~~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d 499 (625)
..++++++||+.+++ |+.++. +|. +|.+|+++++++ +||++||....+. ...+++.|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~v~~YDp~t~~--W~~~~~--~p~~~r~~~~~~~~~~-~iyv~GG~~~~~~---~~~~~~~y~ 223 (346)
T TIGR03547 152 LIAAYFSQPPEDYFWNKNVLSYDPSTNQ--WRNLGE--NPFLGTAGSAIVHKGN-KLLLINGEIKPGL---RTAEVKQYL 223 (346)
T ss_pred hHHHHhCCChhHcCccceEEEEECCCCc--eeECcc--CCCCcCCCceEEEECC-EEEEEeeeeCCCc---cchheEEEE
Confidence 014789999987766 999975 664 688888888876 9999999864332 235677787
Q ss_pred cCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCC----------------CCCcEEEEeC
Q 048754 500 LGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLH----------------SPSQLFLLDP 563 (625)
Q Consensus 500 ~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~----------------~~~~v~~~d~ 563 (625)
++.++++|+.++.++... ...+..+.+|+++++ +++|||+||.+.... ....+.+||+
T Consensus 224 ~~~~~~~W~~~~~m~~~r-----~~~~~~~~~~~a~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~ 297 (346)
T TIGR03547 224 FTGGKLEWNKLPPLPPPK-----SSSQEGLAGAFAGIS-NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYAL 297 (346)
T ss_pred ecCCCceeeecCCCCCCC-----CCccccccEEeeeEE-CCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEe
Confidence 754467999998772000 000112345556666 999999999753110 1235789999
Q ss_pred CCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEc
Q 048754 564 SEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCL 617 (625)
Q Consensus 564 ~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~ 617 (625)
++++|+.+. .+|.+|..+++++++ ++|||+||.+..+..++||+.|.+
T Consensus 298 --~~~~W~~~~---~lp~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~~~~ 345 (346)
T TIGR03547 298 --DNGKWSKVG---KLPQGLAYGVSVSWN-NGVLLIGGENSGGKAVTDVYLLSW 345 (346)
T ss_pred --cCCcccccC---CCCCCceeeEEEEcC-CEEEEEeccCCCCCEeeeEEEEEe
Confidence 688999885 678888777766665 699999999988888999998876
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.6e-35 Score=308.15 Aligned_cols=289 Identities=21% Similarity=0.298 Sum_probs=243.2
Q ss_pred eeEEeeecCC-CCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCE
Q 048754 292 CWRKFTVRGA-VEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSW 370 (625)
Q Consensus 292 ~W~~~~~~~~-~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~ 370 (625)
.|..++...+ .+.+|..... ...+.||++||........+.+.+||+.+ +.|..+ .++|.+|..++++++ +++
T Consensus 261 ~~~~~~~~~~~~~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~yd~~~--~~w~~~--a~m~~~r~~~~~~~~-~~~ 334 (571)
T KOG4441|consen 261 KYHLLPQRRPVMQSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVECYDPKT--NEWSSL--APMPSPRCRVGVAVL-NGK 334 (571)
T ss_pred HHhhCcccCccccCCCcccCc-CCCCeEEEECCCCCCCcccceeEEecCCc--CcEeec--CCCCcccccccEEEE-CCE
Confidence 4555443221 3333433332 45688999999976567788899999998 689977 788899998888888 569
Q ss_pred EEEEccCC-CCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCC
Q 048754 371 LVVFGGCG-RQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKP 449 (625)
Q Consensus 371 iyv~GG~~-~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~ 449 (625)
||++||.+ +...++++|+||+.++ +|.++++| +.+|.+++.+++ ++.||++||.+ +...++++++||+.++.
T Consensus 335 lYv~GG~~~~~~~l~~ve~YD~~~~--~W~~~a~M--~~~R~~~~v~~l-~g~iYavGG~d-g~~~l~svE~YDp~~~~- 407 (571)
T KOG4441|consen 335 LYVVGGYDSGSDRLSSVERYDPRTN--QWTPVAPM--NTKRSDFGVAVL-DGKLYAVGGFD-GEKSLNSVECYDPVTNK- 407 (571)
T ss_pred EEEEccccCCCcccceEEEecCCCC--ceeccCCc--cCccccceeEEE-CCEEEEEeccc-cccccccEEEecCCCCc-
Confidence 99999999 6778999999999999 89999988 889999999999 55999999987 44578999999987766
Q ss_pred ceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCc
Q 048754 450 MWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPR 529 (625)
Q Consensus 450 ~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r 529 (625)
|+.+++ ++.+|++|+++++++ +||++||.+.... .++.+..||+. +++|+.++++ +.+|
T Consensus 408 -W~~va~--m~~~r~~~gv~~~~g-~iYi~GG~~~~~~---~l~sve~YDP~--t~~W~~~~~M------------~~~R 466 (571)
T KOG4441|consen 408 -WTPVAP--MLTRRSGHGVAVLGG-KLYIIGGGDGSSN---CLNSVECYDPE--TNTWTLIAPM------------NTRR 466 (571)
T ss_pred -ccccCC--CCcceeeeEEEEECC-EEEEEcCcCCCcc---ccceEEEEcCC--CCceeecCCc------------cccc
Confidence 999987 777999999999987 9999999887663 26999999999 7799999987 8899
Q ss_pred cceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCcc
Q 048754 530 LDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVL 609 (625)
Q Consensus 530 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~ 609 (625)
.++.++++ +++||++||.+. ......+.+||+ .+++|+.+. .++.+|..+++++.+ +++|++||+++.. ++
T Consensus 467 ~~~g~a~~-~~~iYvvGG~~~-~~~~~~VE~ydp--~~~~W~~v~---~m~~~rs~~g~~~~~-~~ly~vGG~~~~~-~l 537 (571)
T KOG4441|consen 467 SGFGVAVL-NGKIYVVGGFDG-TSALSSVERYDP--ETNQWTMVA---PMTSPRSAVGVVVLG-GKLYAVGGFDGNN-NL 537 (571)
T ss_pred ccceEEEE-CCEEEEECCccC-CCccceEEEEcC--CCCceeEcc---cCccccccccEEEEC-CEEEEEecccCcc-cc
Confidence 99998888 999999999987 445677999999 799999994 677788888888887 5999999988876 59
Q ss_pred CceEEEEccCCCCC
Q 048754 610 NELHELCLASKQDS 623 (625)
Q Consensus 610 ~d~~~~~~~~~~~~ 623 (625)
+.+..||+.+++|.
T Consensus 538 ~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 538 NTVECYDPETDTWT 551 (571)
T ss_pred ceeEEcCCCCCcee
Confidence 99999999999875
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.5e-35 Score=306.71 Aligned_cols=267 Identities=21% Similarity=0.318 Sum_probs=231.4
Q ss_pred cceeeeecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccc
Q 048754 281 LARELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWG 360 (625)
Q Consensus 281 ~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~ 360 (625)
...+.||+.++.|..+. ++|.+|..+++++++++||+.||++.....++++++||+.. ++|..+ ++|+.+|.+
T Consensus 301 ~~ve~yd~~~~~w~~~a---~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~--~~W~~~--a~M~~~R~~ 373 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLA---PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRT--NQWTPV--APMNTKRSD 373 (571)
T ss_pred ceeEEecCCcCcEeecC---CCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCC--Cceecc--CCccCcccc
Confidence 44667999999999998 78899999999999999999999975556789999999998 799986 889999999
Q ss_pred eeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEE
Q 048754 361 HTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTY 440 (625)
Q Consensus 361 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 440 (625)
++++++ ++.||++||+++...++++++||+.++ +|..+++| +.+|++|+++++ +++||++||.......+++++
T Consensus 374 ~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m--~~~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve 447 (571)
T KOG4441|consen 374 FGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPM--LTRRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVE 447 (571)
T ss_pred ceeEEE-CCEEEEEeccccccccccEEEecCCCC--cccccCCC--CcceeeeEEEEE-CCEEEEEcCcCCCccccceEE
Confidence 999999 558999999999999999999999999 99999988 669999999999 559999999877766899999
Q ss_pred EEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCC
Q 048754 441 LLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGS 520 (625)
Q Consensus 441 ~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~ 520 (625)
+|||.+++ |+.+++ ++.+|.+++++++++ +||++||++.... ...+..||+. +++|+.+..+
T Consensus 448 ~YDP~t~~--W~~~~~--M~~~R~~~g~a~~~~-~iYvvGG~~~~~~----~~~VE~ydp~--~~~W~~v~~m------- 509 (571)
T KOG4441|consen 448 CYDPETNT--WTLIAP--MNTRRSGFGVAVLNG-KIYVVGGFDGTSA----LSSVERYDPE--TNQWTMVAPM------- 509 (571)
T ss_pred EEcCCCCc--eeecCC--cccccccceEEEECC-EEEEECCccCCCc----cceEEEEcCC--CCceeEcccC-------
Confidence 99988877 999987 899999999999988 9999999988433 4679999999 7799999766
Q ss_pred CCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEE
Q 048754 521 QSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCV 590 (625)
Q Consensus 521 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~ 590 (625)
+.+|..+.+++. ++++|++||.+. ....+.+..||+ .+++|+.+. .+...+.+.++++
T Consensus 510 -----~~~rs~~g~~~~-~~~ly~vGG~~~-~~~l~~ve~ydp--~~d~W~~~~---~~~~~~~~~~~~~ 567 (571)
T KOG4441|consen 510 -----TSPRSAVGVVVL-GGKLYAVGGFDG-NNNLNTVECYDP--ETDTWTEVT---EPESGRGGAGVAV 567 (571)
T ss_pred -----ccccccccEEEE-CCEEEEEecccC-ccccceeEEcCC--CCCceeeCC---CccccccCcceEE
Confidence 788888888888 999999999754 445899999999 799999985 3444444444443
No 7
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=3.7e-34 Score=285.65 Aligned_cols=275 Identities=16% Similarity=0.307 Sum_probs=211.4
Q ss_pred CCCcccceEEECCEEEEEcccCCCC---------CCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEE
Q 048754 304 PSRCNFSACAAGNRLVLFGGEGVNM---------QPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVF 374 (625)
Q Consensus 304 ~~r~~~~~~~~~~~lyv~GG~~~~~---------~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~ 374 (625)
..+.++.++++++.|||+||++.+. ..++++++|+....+.+|..+ +++|.+|..++++++ +++||++
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~--~~lp~~r~~~~~~~~-~~~lyvi 78 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKD--GQLPYEAAYGASVSV-ENGIYYI 78 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEc--ccCCccccceEEEEE-CCEEEEE
Confidence 4578889999999999999986543 245689988733323479876 678888988877777 6689999
Q ss_pred ccCCCCCccccEEEEECCCCCCEE----EEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCc
Q 048754 375 GGCGRQGLLNDVFVLDLDAKQPTW----IEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPM 450 (625)
Q Consensus 375 GG~~~~~~~~~~~~~d~~t~~~~W----~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~ 450 (625)
||......++++++||+.++ +| ..++++ |.+|..|+++++ +++|||+||... +..++++++||+.+++
T Consensus 79 GG~~~~~~~~~v~~~d~~~~--~w~~~~~~~~~l--p~~~~~~~~~~~-~~~iYv~GG~~~-~~~~~~v~~yd~~~~~-- 150 (323)
T TIGR03548 79 GGSNSSERFSSVYRITLDES--KEELICETIGNL--PFTFENGSACYK-DGTLYVGGGNRN-GKPSNKSYLFNLETQE-- 150 (323)
T ss_pred cCCCCCCCceeEEEEEEcCC--ceeeeeeEcCCC--CcCccCceEEEE-CCEEEEEeCcCC-CccCceEEEEcCCCCC--
Confidence 99987777899999999988 65 677766 888999999888 569999999753 3457899999987766
Q ss_pred eEEcCCCCCC-CCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCc
Q 048754 451 WREIPTSWSP-PSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPR 529 (625)
Q Consensus 451 W~~~~~~~~p-~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r 529 (625)
|+.++. +| .+|..|+++++++ +||++||.+... ..++++||+. +.+|+.++.++ .+..|..+
T Consensus 151 W~~~~~--~p~~~r~~~~~~~~~~-~iYv~GG~~~~~-----~~~~~~yd~~--~~~W~~~~~~~-------~~~~p~~~ 213 (323)
T TIGR03548 151 WFELPD--FPGEPRVQPVCVKLQN-ELYVFGGGSNIA-----YTDGYKYSPK--KNQWQKVADPT-------TDSEPISL 213 (323)
T ss_pred eeECCC--CCCCCCCcceEEEECC-EEEEEcCCCCcc-----ccceEEEecC--CCeeEECCCCC-------CCCCceec
Confidence 999875 55 4788888888876 999999986432 3578999999 67999997651 11234445
Q ss_pred cceEEEEecCCEEEEEecCCCCC-------------------------------CCCCcEEEEeCCCCCCCeEEEcCCCC
Q 048754 530 LDHVAVSMPCGRIIIFGGSIAGL-------------------------------HSPSQLFLLDPSEEKPSWRILNVPGQ 578 (625)
Q Consensus 530 ~~~~~~~~~~~~l~v~GG~~~~~-------------------------------~~~~~v~~~d~~~~~~~W~~v~~~~~ 578 (625)
..++++++.+++|||+||.+... ...+++++||+ .+++|+.+. .
T Consensus 214 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~---~ 288 (323)
T TIGR03548 214 LGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNV--RTGKWKSIG---N 288 (323)
T ss_pred cceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEEC--CCCeeeEcc---c
Confidence 56666666588999999986321 11368999999 789999985 3
Q ss_pred CC-CCCCcceEEEECCcEEEEEcCcCCCCCccCce
Q 048754 579 PP-KFAWGHSTCVVGGTRVLVLGGHTGEEWVLNEL 612 (625)
Q Consensus 579 ~p-~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~ 612 (625)
+| .+|.+++++++++ +||++||....+.+..++
T Consensus 289 ~p~~~r~~~~~~~~~~-~iyv~GG~~~pg~rt~~~ 322 (323)
T TIGR03548 289 SPFFARCGAALLLTGN-NIFSINGELKPGVRTPDI 322 (323)
T ss_pred ccccccCchheEEECC-EEEEEeccccCCcCCcCc
Confidence 44 5788898888874 999999987766555554
No 8
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=7.1e-34 Score=295.57 Aligned_cols=282 Identities=20% Similarity=0.294 Sum_probs=220.7
Q ss_pred eEEECCEEEEEcccCCCCCCCCCeEEE--eccCC--CCceEEcccC-CCCCCccceeEEEEcCCEEEEEccCCC-C-Ccc
Q 048754 311 ACAAGNRLVLFGGEGVNMQPMDDTFVL--NLDAA--NPEWRRVSVK-SSPPGRWGHTLSSLNGSWLVVFGGCGR-Q-GLL 383 (625)
Q Consensus 311 ~~~~~~~lyv~GG~~~~~~~~~~~~~~--~~~~~--~~~W~~~~~~-~~p~~r~~~~~~~~~~~~iyv~GG~~~-~-~~~ 383 (625)
.++.+++|+.|+|.... .++.+-+| ++.+. .++|.++... .+|.+|.+|+++++ +++|||+||... . ...
T Consensus 116 f~~~~~~ivgf~G~~~~--~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~-~~~iyv~GG~~~~~~~~~ 192 (470)
T PLN02193 116 FVLQGGKIVGFHGRSTD--VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQV-GNKIYSFGGEFTPNQPID 192 (470)
T ss_pred EEEcCCeEEEEeccCCC--cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEE-CCEEEEECCcCCCCCCee
Confidence 34458999999997543 34444444 54331 2689998643 36889999999988 568999999753 2 245
Q ss_pred ccEEEEECCCCCCEEEEcCCC-CCCC-CCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCC-CCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGG-APPL-PRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTS-WSP 460 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~-~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~-~~p 460 (625)
+++|+||+.++ +|..++.+ ..|. .|.+|+++.+ +++||||||.... ..++++|+||+.+++ |+++++. ..|
T Consensus 193 ~~v~~yD~~~~--~W~~~~~~g~~P~~~~~~~~~v~~-~~~lYvfGG~~~~-~~~ndv~~yD~~t~~--W~~l~~~~~~P 266 (470)
T PLN02193 193 KHLYVFDLETR--TWSISPATGDVPHLSCLGVRMVSI-GSTLYVFGGRDAS-RQYNGFYSFDTTTNE--WKLLTPVEEGP 266 (470)
T ss_pred CcEEEEECCCC--EEEeCCCCCCCCCCcccceEEEEE-CCEEEEECCCCCC-CCCccEEEEECCCCE--EEEcCcCCCCC
Confidence 78999999999 99987653 2343 4678888888 6699999997644 367899999987765 9998752 237
Q ss_pred CCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCC
Q 048754 461 PSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG 540 (625)
Q Consensus 461 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~ 540 (625)
.+|+.|+++++++ +||++||...... .++++.||+. +.+|+.++.. +..|.+|.+|+++++ ++
T Consensus 267 ~~R~~h~~~~~~~-~iYv~GG~~~~~~----~~~~~~yd~~--t~~W~~~~~~---------~~~~~~R~~~~~~~~-~g 329 (470)
T PLN02193 267 TPRSFHSMAADEE-NVYVFGGVSATAR----LKTLDSYNIV--DKKWFHCSTP---------GDSFSIRGGAGLEVV-QG 329 (470)
T ss_pred CCccceEEEEECC-EEEEECCCCCCCC----cceEEEEECC--CCEEEeCCCC---------CCCCCCCCCcEEEEE-CC
Confidence 8999999988876 9999999875443 4889999999 6799998754 345788999988888 89
Q ss_pred EEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC--------CCCccCce
Q 048754 541 RIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG--------EEWVLNEL 612 (625)
Q Consensus 541 ~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~--------~~~~~~d~ 612 (625)
+|||+||.+. ...+++++||+ .+++|+.+...+..|.+|..|++++++ ++||||||... ...+.+|+
T Consensus 330 kiyviGG~~g--~~~~dv~~yD~--~t~~W~~~~~~g~~P~~R~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~ndv 404 (470)
T PLN02193 330 KVWVVYGFNG--CEVDDVHYYDP--VQDKWTQVETFGVRPSERSVFASAAVG-KHIVIFGGEIAMDPLAHVGPGQLTDGT 404 (470)
T ss_pred cEEEEECCCC--CccCceEEEEC--CCCEEEEeccCCCCCCCcceeEEEEEC-CEEEEECCccCCccccccCccceeccE
Confidence 9999999753 23689999999 799999998777788999999998887 59999999864 12467899
Q ss_pred EEEEccCCCCC
Q 048754 613 HELCLASKQDS 623 (625)
Q Consensus 613 ~~~~~~~~~~~ 623 (625)
|.||+.+.++.
T Consensus 405 ~~~D~~t~~W~ 415 (470)
T PLN02193 405 FALDTETLQWE 415 (470)
T ss_pred EEEEcCcCEEE
Confidence 99999988765
No 9
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=3.6e-34 Score=290.70 Aligned_cols=289 Identities=18% Similarity=0.289 Sum_probs=215.9
Q ss_pred CeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCC-CCccceeEEEEcCC
Q 048754 291 VCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSP-PGRWGHTLSSLNGS 369 (625)
Q Consensus 291 ~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p-~~r~~~~~~~~~~~ 369 (625)
..++.++ ++|.+|..+++++++++|||+||... +.+|+||+....++|..+ +++| .+|.+|+++++ ++
T Consensus 17 ~~~~~l~---~lP~~~~~~~~~~~~~~iyv~gG~~~-----~~~~~~d~~~~~~~W~~l--~~~p~~~r~~~~~v~~-~~ 85 (376)
T PRK14131 17 ANAEQLP---DLPVPFKNGTGAIDNNTVYVGLGSAG-----TSWYKLDLNAPSKGWTKI--AAFPGGPREQAVAAFI-DG 85 (376)
T ss_pred eecccCC---CCCcCccCCeEEEECCEEEEEeCCCC-----CeEEEEECCCCCCCeEEC--CcCCCCCcccceEEEE-CC
Confidence 3456665 68888888889999999999999733 348999997655789987 4555 47888888877 56
Q ss_pred EEEEEccCCC------CCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCC----------
Q 048754 370 WLVVFGGCGR------QGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAG---------- 433 (625)
Q Consensus 370 ~iyv~GG~~~------~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~---------- 433 (625)
+|||+||... ...++++|+||+.++ +|..++. ..|.++.+|+++++.+++||++||.....
T Consensus 86 ~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n--~W~~~~~-~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~ 162 (376)
T PRK14131 86 KLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN--SWQKLDT-RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAA 162 (376)
T ss_pred EEEEEcCCCCCCCCCceeEcccEEEEeCCCC--EEEeCCC-CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhh
Confidence 8999999864 134689999999999 9999985 23677888888774467999999975310
Q ss_pred -----------------------ceeceEEEEecCCCCCceEEcCCCCCCC-CCCcceEEEECCcEEEEEcCCcCCCCcc
Q 048754 434 -----------------------VLLSDTYLLDLTTDKPMWREIPTSWSPP-SRLGHSLSVYGRTKVLMFGGLAKSGHLR 489 (625)
Q Consensus 434 -----------------------~~~~~~~~~d~~~~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~ 489 (625)
..++++++||+.+++ |+.++. +|. +|.+|+++++++ +||++||....+.
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~--W~~~~~--~p~~~~~~~a~v~~~~-~iYv~GG~~~~~~-- 235 (376)
T PRK14131 163 AGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQ--WKNAGE--SPFLGTAGSAVVIKGN-KLWLINGEIKPGL-- 235 (376)
T ss_pred cccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCe--eeECCc--CCCCCCCcceEEEECC-EEEEEeeeECCCc--
Confidence 124789999987766 999875 664 678888877776 9999999754432
Q ss_pred cccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCcc--------ceEEEEecCCEEEEEecCCCCCC--------
Q 048754 490 LRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRL--------DHVAVSMPCGRIIIFGGSIAGLH-------- 553 (625)
Q Consensus 490 ~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~--------~~~~~~~~~~~l~v~GG~~~~~~-------- 553 (625)
...+++.|+++.++.+|+.+..+ |.+|. .+.++++ +++|||+||.+....
T Consensus 236 -~~~~~~~~~~~~~~~~W~~~~~~------------p~~~~~~~~~~~~~~~a~~~-~~~iyv~GG~~~~~~~~~~~~~~ 301 (376)
T PRK14131 236 -RTDAVKQGKFTGNNLKWQKLPDL------------PPAPGGSSQEGVAGAFAGYS-NGVLLVAGGANFPGARENYQNGK 301 (376)
T ss_pred -CChhheEEEecCCCcceeecCCC------------CCCCcCCcCCccceEeceeE-CCEEEEeeccCCCCChhhhhcCC
Confidence 24667766554347799999876 33332 2224445 899999999753211
Q ss_pred -----C---CCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 554 -----S---PSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 554 -----~---~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
. ...+.+||+ ++++|+.+. .+|.+|.++++++++ ++|||+||....+..+++|++|++..+
T Consensus 302 ~~~~~~~~~~~~~e~yd~--~~~~W~~~~---~lp~~r~~~~av~~~-~~iyv~GG~~~~~~~~~~v~~~~~~~~ 370 (376)
T PRK14131 302 LYAHEGLKKSWSDEIYAL--VNGKWQKVG---ELPQGLAYGVSVSWN-NGVLLIGGETAGGKAVSDVTLLSWDGK 370 (376)
T ss_pred cccccCCcceeehheEEe--cCCcccccC---cCCCCccceEEEEeC-CEEEEEcCCCCCCcEeeeEEEEEEcCC
Confidence 0 124568999 689999874 778899888877776 599999998876667999999998754
No 10
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2e-34 Score=304.54 Aligned_cols=250 Identities=9% Similarity=0.184 Sum_probs=212.4
Q ss_pred eeeeecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCcccee
Q 048754 283 RELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHT 362 (625)
Q Consensus 283 ~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~ 362 (625)
...||+.+.+|..++ ++|.+|.++++++++++||++||.......++++++||+.+ ++|..+ +++|.+|.+++
T Consensus 274 v~~yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~--n~W~~~--~~m~~~R~~~~ 346 (557)
T PHA02713 274 ILVYNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIEN--KIHVEL--PPMIKNRCRFS 346 (557)
T ss_pred EEEEeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCC--CeEeeC--CCCcchhhcee
Confidence 456899999999987 68888999999999999999999854445678899999988 799977 78899999999
Q ss_pred EEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCC---------
Q 048754 363 LSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAG--------- 433 (625)
Q Consensus 363 ~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~--------- 433 (625)
++++ +++||++||..+...++++++||+.++ +|..++++ |.+|.+|+++++ +++||++||.+...
T Consensus 347 ~~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~m--p~~r~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~ 420 (557)
T PHA02713 347 LAVI-DDTIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDM--PIALSSYGMCVL-DQYIYIIGGRTEHIDYTSVHHMN 420 (557)
T ss_pred EEEE-CCEEEEECCcCCCCCCceEEEEECCCC--eEEECCCC--CcccccccEEEE-CCEEEEEeCCCcccccccccccc
Confidence 9888 568999999976667889999999999 99999987 889999999888 56999999976421
Q ss_pred --------ceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCC-
Q 048754 434 --------VLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEE- 504 (625)
Q Consensus 434 --------~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~- 504 (625)
..++++++|||.+++ |+.+++ ++.+|..++++++++ +||++||.+..... .+.+.+||++ +
T Consensus 421 ~~~~~~~~~~~~~ve~YDP~td~--W~~v~~--m~~~r~~~~~~~~~~-~IYv~GG~~~~~~~---~~~ve~Ydp~--~~ 490 (557)
T PHA02713 421 SIDMEEDTHSSNKVIRYDTVNNI--WETLPN--FWTGTIRPGVVSHKD-DIYVVCDIKDEKNV---KTCIFRYNTN--TY 490 (557)
T ss_pred cccccccccccceEEEECCCCCe--EeecCC--CCcccccCcEEEECC-EEEEEeCCCCCCcc---ceeEEEecCC--CC
Confidence 125789999987766 999986 888999999999987 99999998643321 2467899999 6
Q ss_pred CceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 505 PQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 505 ~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
++|+.++++ |.+|..+.++++ +++||++||.++ ...+.+||+ .+++|+.+.
T Consensus 491 ~~W~~~~~m------------~~~r~~~~~~~~-~~~iyv~Gg~~~----~~~~e~yd~--~~~~W~~~~ 541 (557)
T PHA02713 491 NGWELITTT------------ESRLSALHTILH-DNTIMMLHCYES----YMLQDTFNV--YTYEWNHIC 541 (557)
T ss_pred CCeeEcccc------------CcccccceeEEE-CCEEEEEeeecc----eeehhhcCc--ccccccchh
Confidence 699999877 889999999988 999999999864 247889999 799999885
No 11
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=5.3e-35 Score=272.66 Aligned_cols=257 Identities=27% Similarity=0.449 Sum_probs=219.1
Q ss_pred CCCCCCccceeEEEEc-CCEEEEEccCC--C--CCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEE
Q 048754 352 KSSPPGRWGHTLSSLN-GSWLVVFGGCG--R--QGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVS 426 (625)
Q Consensus 352 ~~~p~~r~~~~~~~~~-~~~iyv~GG~~--~--~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~ 426 (625)
-++|.||.++++++-. .+.+++|||.- + ...+||+|.||+.++ .|.++..+..|.||++|.++++..+.+|+|
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~--eWkk~~spn~P~pRsshq~va~~s~~l~~f 138 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKN--EWKKVVSPNAPPPRSSHQAVAVPSNILWLF 138 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEecccc--ceeEeccCCCcCCCccceeEEeccCeEEEe
Confidence 3578889999888742 34799999972 2 226899999999999 999998888899999999999987899999
Q ss_pred cCcCCCCc-----eeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 427 GGCTDAGV-----LLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 427 GG~~~~~~-----~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
||.-.+.. ...++|+||+.+++ |+++..++.|.+|.+|.|++..+ +|+||||+......-.+++++|+||++
T Consensus 139 GGEfaSPnq~qF~HYkD~W~fd~~trk--weql~~~g~PS~RSGHRMvawK~-~lilFGGFhd~nr~y~YyNDvy~FdLd 215 (521)
T KOG1230|consen 139 GGEFASPNQEQFHHYKDLWLFDLKTRK--WEQLEFGGGPSPRSGHRMVAWKR-QLILFGGFHDSNRDYIYYNDVYAFDLD 215 (521)
T ss_pred ccccCCcchhhhhhhhheeeeeeccch--heeeccCCCCCCCccceeEEeee-eEEEEcceecCCCceEEeeeeEEEecc
Confidence 99754321 34799999998877 99999888999999999999987 999999998776655679999999999
Q ss_pred CCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCC--------CCCCCCcEEEEeCC---CCCCCe
Q 048754 502 DEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIA--------GLHSPSQLFLLDPS---EEKPSW 570 (625)
Q Consensus 502 ~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~~~~v~~~d~~---~~~~~W 570 (625)
+.+|+++.+. |..|.||++++..+...+.|||.||++. .+...+|+|.+++. .++..|
T Consensus 216 --tykW~Kleps---------ga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W 284 (521)
T KOG1230|consen 216 --TYKWSKLEPS---------GAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVW 284 (521)
T ss_pred --ceeeeeccCC---------CCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeE
Confidence 8999999875 5689999999999998999999999963 23347899999994 134889
Q ss_pred EEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC--------CCCccCceEEEEccCCCCCC
Q 048754 571 RILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG--------EEWVLNELHELCLASKQDSD 624 (625)
Q Consensus 571 ~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~--------~~~~~~d~~~~~~~~~~~~~ 624 (625)
+++.+.|..|.+|.+.++++..+++-+.|||... .+.|+||+|.|+++.+.+++
T Consensus 285 ~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~ 346 (521)
T KOG1230|consen 285 TKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSE 346 (521)
T ss_pred eeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhH
Confidence 9999999999999999999999889999999654 13589999999999888765
No 12
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2e-33 Score=296.88 Aligned_cols=264 Identities=14% Similarity=0.169 Sum_probs=214.3
Q ss_pred EEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCC-CCCccccEEEEECCCCC
Q 048754 317 RLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCG-RQGLLNDVFVLDLDAKQ 395 (625)
Q Consensus 317 ~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~~d~~t~~ 395 (625)
.|++.||.. ......+++||+.+ ++|..+ +++|.+|.+|+++++ +++||++||.. .....+++++||+.++
T Consensus 259 ~l~~~~g~~--~~~~~~v~~yd~~~--~~W~~l--~~mp~~r~~~~~a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n- 330 (557)
T PHA02713 259 CLVCHDTKY--NVCNPCILVYNINT--MEYSVI--STIPNHIINYASAIV-DNEIIIAGGYNFNNPSLNKVYKINIENK- 330 (557)
T ss_pred EEEEecCcc--ccCCCCEEEEeCCC--CeEEEC--CCCCccccceEEEEE-CCEEEEEcCCCCCCCccceEEEEECCCC-
Confidence 355555521 12334689999988 799987 678888998888877 66899999985 3345789999999999
Q ss_pred CEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcE
Q 048754 396 PTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTK 475 (625)
Q Consensus 396 ~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~ 475 (625)
+|..++++ |.+|..|+++++ +++||++||.... ..++++++||+.+++ |+.+++ +|.+|.+++++++++ +
T Consensus 331 -~W~~~~~m--~~~R~~~~~~~~-~g~IYviGG~~~~-~~~~sve~Ydp~~~~--W~~~~~--mp~~r~~~~~~~~~g-~ 400 (557)
T PHA02713 331 -IHVELPPM--IKNRCRFSLAVI-DDTIYAIGGQNGT-NVERTIECYTMGDDK--WKMLPD--MPIALSSYGMCVLDQ-Y 400 (557)
T ss_pred -eEeeCCCC--cchhhceeEEEE-CCEEEEECCcCCC-CCCceEEEEECCCCe--EEECCC--CCcccccccEEEECC-E
Confidence 99999988 889999999888 5599999997543 357889999987766 999986 899999999999877 9
Q ss_pred EEEEcCCcCCCCc--------------ccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCE
Q 048754 476 VLMFGGLAKSGHL--------------RLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGR 541 (625)
Q Consensus 476 l~v~GG~~~~~~~--------------~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~ 541 (625)
||++||.+..... ...++.+++||+. +.+|+.++++ +.+|..++++++ +++
T Consensus 401 IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~--td~W~~v~~m------------~~~r~~~~~~~~-~~~ 465 (557)
T PHA02713 401 IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV--NNIWETLPNF------------WTGTIRPGVVSH-KDD 465 (557)
T ss_pred EEEEeCCCcccccccccccccccccccccccceEEEECCC--CCeEeecCCC------------CcccccCcEEEE-CCE
Confidence 9999998643210 0124789999999 6799999876 788998888888 999
Q ss_pred EEEEecCCCCCCCCCcEEEEeCCCCC-CCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 542 IIIFGGSIAGLHSPSQLFLLDPSEEK-PSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 542 l~v~GG~~~~~~~~~~v~~~d~~~~~-~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
|||+||.+......+.+++||+ ++ ++|+.+. .+|.+|..++++++++ +||++||+++. ..+.+||+.++
T Consensus 466 IYv~GG~~~~~~~~~~ve~Ydp--~~~~~W~~~~---~m~~~r~~~~~~~~~~-~iyv~Gg~~~~----~~~e~yd~~~~ 535 (557)
T PHA02713 466 IYVVCDIKDEKNVKTCIFRYNT--NTYNGWELIT---TTESRLSALHTILHDN-TIMMLHCYESY----MLQDTFNVYTY 535 (557)
T ss_pred EEEEeCCCCCCccceeEEEecC--CCCCCeeEcc---ccCcccccceeEEECC-EEEEEeeecce----eehhhcCcccc
Confidence 9999998643333456899999 67 7999985 7889999999999974 99999999873 47889999999
Q ss_pred CCC
Q 048754 621 QDS 623 (625)
Q Consensus 621 ~~~ 623 (625)
+|.
T Consensus 536 ~W~ 538 (557)
T PHA02713 536 EWN 538 (557)
T ss_pred ccc
Confidence 886
No 13
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=3.1e-33 Score=289.34 Aligned_cols=297 Identities=33% Similarity=0.561 Sum_probs=244.3
Q ss_pred ecCCCCCCCcccceEEECCEEEEEcccCCCCCCCC-CeEEEeccCCCCceEEcccCC-CCCCccceeEEEEcCCEEEEEc
Q 048754 298 VRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMD-DTFVLNLDAANPEWRRVSVKS-SPPGRWGHTLSSLNGSWLVVFG 375 (625)
Q Consensus 298 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~-~~~~~~~~~~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~iyv~G 375 (625)
..+..|.+|.+|+++.+++++|||||........+ |+|++|+.+ ..|....+.+ .|.+|++|+++++ +++||+||
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~--~~w~~~~~~g~~p~~r~g~~~~~~-~~~l~lfG 129 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLES--QLWTKPAATGDEPSPRYGHSLSAV-GDKLYLFG 129 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCC--cccccccccCCCCCcccceeEEEE-CCeEEEEc
Confidence 45678889999999999999999999877654444 699999998 6898876554 5779999999999 56899999
Q ss_pred cCCC-CCccccEEEEECCCCCCEEEEcCC-CCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEE
Q 048754 376 GCGR-QGLLNDVFVLDLDAKQPTWIEVSG-GAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWRE 453 (625)
Q Consensus 376 G~~~-~~~~~~~~~~d~~t~~~~W~~~~~-~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~ 453 (625)
|... ...+++++.||+.|+ +|..+.. ..+|.+|.+|+++.+ ++++|||||....+...+++|+||+.+.+ |.+
T Consensus 130 G~~~~~~~~~~l~~~d~~t~--~W~~l~~~~~~P~~r~~Hs~~~~-g~~l~vfGG~~~~~~~~ndl~i~d~~~~~--W~~ 204 (482)
T KOG0379|consen 130 GTDKKYRNLNELHSLDLSTR--TWSLLSPTGDPPPPRAGHSATVV-GTKLVVFGGIGGTGDSLNDLHIYDLETST--WSE 204 (482)
T ss_pred cccCCCCChhheEeccCCCC--cEEEecCcCCCCCCcccceEEEE-CCEEEEECCccCcccceeeeeeecccccc--cee
Confidence 9974 556889999999999 9997753 345899999999988 57999999998777789999999987766 999
Q ss_pred cCCC-CCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccce
Q 048754 454 IPTS-WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDH 532 (625)
Q Consensus 454 ~~~~-~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~ 532 (625)
+... ..|.||++|+++++++ +++|+||...... .++++|.||+. +.+|.++... +..|.+|++|
T Consensus 205 ~~~~g~~P~pR~gH~~~~~~~-~~~v~gG~~~~~~---~l~D~~~ldl~--~~~W~~~~~~---------g~~p~~R~~h 269 (482)
T KOG0379|consen 205 LDTQGEAPSPRYGHAMVVVGN-KLLVFGGGDDGDV---YLNDVHILDLS--TWEWKLLPTG---------GDLPSPRSGH 269 (482)
T ss_pred cccCCCCCCCCCCceEEEECC-eEEEEeccccCCc---eecceEeeecc--cceeeecccc---------CCCCCCccee
Confidence 9764 3678999999999988 8888888873333 37999999999 6899977665 6889999999
Q ss_pred EEEEecCCEEEEEecCCCCCC-CCCcEEEEeCCCCCCCeEEEcCCC-CCCCCCCcceEEEECC---cEEEEEcCcCCCCC
Q 048754 533 VAVSMPCGRIIIFGGSIAGLH-SPSQLFLLDPSEEKPSWRILNVPG-QPPKFAWGHSTCVVGG---TRVLVLGGHTGEEW 607 (625)
Q Consensus 533 ~~~~~~~~~l~v~GG~~~~~~-~~~~v~~~d~~~~~~~W~~v~~~~-~~p~~r~~~~~~~~~~---~~i~i~GG~~~~~~ 607 (625)
+.+.. +++++|+||...... .+.++|.|++ .+..|.++...+ ..|.++..|+.+.... ..+.++||......
T Consensus 270 ~~~~~-~~~~~l~gG~~~~~~~~l~~~~~l~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (482)
T KOG0379|consen 270 SLTVS-GDHLLLFGGGTDPKQEPLGDLYGLDL--ETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGE 346 (482)
T ss_pred eeEEE-CCEEEEEcCCcccccccccccccccc--cccceeeeeccccccccccccccceeeccCCccceeeecCcccccc
Confidence 99955 999999999876533 5899999999 699999999777 6788888888877753 45667777665555
Q ss_pred ccCceEEEEccCC
Q 048754 608 VLNELHELCLASK 620 (625)
Q Consensus 608 ~~~d~~~~~~~~~ 620 (625)
..++++.+.....
T Consensus 347 ~~~~~~~~~~~~~ 359 (482)
T KOG0379|consen 347 RLADVFSLQIKLL 359 (482)
T ss_pred chhhccccccccc
Confidence 6777776665443
No 14
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=8.9e-33 Score=277.67 Aligned_cols=257 Identities=23% Similarity=0.339 Sum_probs=200.7
Q ss_pred CceEEcccCC--CCCCccceeEEEEcCCEEEEEccCCC--CCccccEEEEECCCCCCEEEEcCCCC-CCC-CCccceEEE
Q 048754 344 PEWRRVSVKS--SPPGRWGHTLSSLNGSWLVVFGGCGR--QGLLNDVFVLDLDAKQPTWIEVSGGA-PPL-PRSWHSSCI 417 (625)
Q Consensus 344 ~~W~~~~~~~--~p~~r~~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~d~~t~~~~W~~~~~~~-~p~-~r~~~~~~~ 417 (625)
.+|.++.... +|.+|.+|+++++ +++|||+||... ....+++|+||+.++ +|..++.+. .|. .+.+|++++
T Consensus 7 ~~W~~~~~~~~~~P~pR~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 7 GGWIKVEQKGGKGPGPRCSHGIAVV-GDKLYSFGGELKPNEHIDKDLYVFDFNTH--TWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred CeEEEecCCCCCCCCCCCcceEEEE-CCEEEEECCccCCCCceeCcEEEEECCCC--EEEEcCccCCCCCCccCceEEEE
Confidence 5799886532 6889999999887 568999999853 234689999999999 999987642 233 244788877
Q ss_pred EcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCC---CCCCCCCcceEEEECCcEEEEEcCCcCCCCc--cccc
Q 048754 418 IEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTS---WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHL--RLRS 492 (625)
Q Consensus 418 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~---~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~--~~~~ 492 (625)
+ +++||||||..... .++++++||+.+++ |+.++.. ..|.+|..|+++++++ +|||+||....+.. ...+
T Consensus 84 ~-~~~iyv~GG~~~~~-~~~~v~~yd~~t~~--W~~~~~~~~~~~p~~R~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 84 V-GTKLYIFGGRDEKR-EFSDFYSYDTVKNE--WTFLTKLDEEGGPEARTFHSMASDEN-HVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred E-CCEEEEECCCCCCC-ccCcEEEEECCCCE--EEEeccCCCCCCCCCceeeEEEEECC-EEEEECCccCCCccCCCccc
Confidence 8 56999999986543 56899999987655 9988642 2378999999988877 99999998753311 1124
Q ss_pred CceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC-------CCCCCcEEEEeCCC
Q 048754 493 GESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG-------LHSPSQLFLLDPSE 565 (625)
Q Consensus 493 ~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~-------~~~~~~v~~~d~~~ 565 (625)
+++++||++ +.+|+.++.+ +..|.+|.+|+++++ +++|||+||.... ....+++++||+
T Consensus 159 ~~v~~yd~~--~~~W~~l~~~---------~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~-- 224 (341)
T PLN02153 159 RTIEAYNIA--DGKWVQLPDP---------GENFEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQFFDP-- 224 (341)
T ss_pred ceEEEEECC--CCeEeeCCCC---------CCCCCCCCcceEEEE-CCeEEEEeccccccccCCccceecCceEEEEc--
Confidence 789999999 6799998765 345678999988887 8999999997421 122579999999
Q ss_pred CCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC--------CCCccCceEEEEccCCCCC
Q 048754 566 EKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG--------EEWVLNELHELCLASKQDS 623 (625)
Q Consensus 566 ~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~--------~~~~~~d~~~~~~~~~~~~ 623 (625)
.+++|+++...+..|.+|..|++++++ ++||||||... .....+|+|+||+.++++.
T Consensus 225 ~~~~W~~~~~~g~~P~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 225 ASGKWTEVETTGAKPSARSVFAHAVVG-KYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred CCCcEEeccccCCCCCCcceeeeEEEC-CEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence 799999998777789999999999887 59999999742 2345789999999988764
No 15
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=3.8e-33 Score=260.31 Aligned_cols=257 Identities=26% Similarity=0.474 Sum_probs=211.2
Q ss_pred CCCCCCcccceEEE--CCEEEEEcccCCCCC---CCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEc
Q 048754 301 AVEPSRCNFSACAA--GNRLVLFGGEGVNMQ---PMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFG 375 (625)
Q Consensus 301 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~---~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~G 375 (625)
++|.||.++++++. .+.|++|||.-.+.+ .+||+|+||..+ ++|+++..++.|+||++|.++++..+.+++||
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~--~eWkk~~spn~P~pRsshq~va~~s~~l~~fG 139 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKK--NEWKKVVSPNAPPPRSSHQAVAVPSNILWLFG 139 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccc--cceeEeccCCCcCCCccceeEEeccCeEEEec
Confidence 57888999888874 568999999654432 479999999988 89999998889999999999999877999999
Q ss_pred cCC--CCC----ccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCC---ceeceEEEEecCC
Q 048754 376 GCG--RQG----LLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAG---VLLSDTYLLDLTT 446 (625)
Q Consensus 376 G~~--~~~----~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~~d~~~ 446 (625)
|.- .++ -+.|+|+||..++ +|+++.....|++|.+|-++++ .++++||||+.+.. .+.|++|+||+++
T Consensus 140 GEfaSPnq~qF~HYkD~W~fd~~tr--kweql~~~g~PS~RSGHRMvaw-K~~lilFGGFhd~nr~y~YyNDvy~FdLdt 216 (521)
T KOG1230|consen 140 GEFASPNQEQFHHYKDLWLFDLKTR--KWEQLEFGGGPSPRSGHRMVAW-KRQLILFGGFHDSNRDYIYYNDVYAFDLDT 216 (521)
T ss_pred cccCCcchhhhhhhhheeeeeeccc--hheeeccCCCCCCCccceeEEe-eeeEEEEcceecCCCceEEeeeeEEEeccc
Confidence 972 111 3689999999999 9999986667999999999999 55999999986543 5889999999877
Q ss_pred CCCceEEcCCCC-CCCCCCcceEEEECCcEEEEEcCCcCCC-----CcccccCceEEEEcCC---CCCceeEeeeccccC
Q 048754 447 DKPMWREIPTSW-SPPSRLGHSLSVYGRTKVLMFGGLAKSG-----HLRLRSGESYTIDLGD---EEPQWKQLECNAFTG 517 (625)
Q Consensus 447 ~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~l~v~GG~~~~~-----~~~~~~~~~~~~d~~~---~~~~W~~~~~~~~~~ 517 (625)
-+ |+++.+.+ .|.||.+|++.+...+.|||+||+.... ......+++|.+++++ +...|.++.+.
T Consensus 217 yk--W~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~---- 290 (521)
T KOG1230|consen 217 YK--WSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPS---- 290 (521)
T ss_pred ee--eeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCC----
Confidence 55 99998643 5889999999999667999999986422 1123468999999884 23689999876
Q ss_pred cCCCCCCCCCCccceEEEEecCCEEEEEecCCC--------CCCCCCcEEEEeCCCCCCCeEEEcC
Q 048754 518 VGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIA--------GLHSPSQLFLLDPSEEKPSWRILNV 575 (625)
Q Consensus 518 ~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~~~~v~~~d~~~~~~~W~~v~~ 575 (625)
|..|.||++.++++..+++-+.|||... .+..++|+|.||+ ..++|+..+.
T Consensus 291 -----g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdl--t~nrW~~~ql 349 (521)
T KOG1230|consen 291 -----GVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDL--TRNRWSEGQL 349 (521)
T ss_pred -----CCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheec--ccchhhHhhh
Confidence 7889999999999998889999999753 2334799999999 6889987653
No 16
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.7e-31 Score=285.70 Aligned_cols=251 Identities=17% Similarity=0.241 Sum_probs=207.1
Q ss_pred eecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEE
Q 048754 286 TTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSS 365 (625)
Q Consensus 286 ~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~ 365 (625)
|+....+|..++ ..| .+..|+++++++.||++||........+++++||+.+ ++|..+ +++|.+|.+|++++
T Consensus 269 ~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~--~~~~~~R~~~~~~~ 340 (534)
T PHA03098 269 NYSPLSEINTII---DIH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKT--KSWNKV--PELIYPRKNPGVTV 340 (534)
T ss_pred cchhhhhccccc---Ccc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCC--CeeeEC--CCCCcccccceEEE
Confidence 555566777764 233 2455788999999999999876666778999999988 799977 67888999999888
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecC
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
+ +++||++||.......+++++||+.++ +|..++++ |.+|.+|+++.+ ++++|++||....+..++++++||+.
T Consensus 341 ~-~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l--p~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~ 414 (534)
T PHA03098 341 F-NNRIYVIGGIYNSISLNTVESWKPGES--KWREEPPL--IFPRYNPCVVNV-NNLIYVIGGISKNDELLKTVECFSLN 414 (534)
T ss_pred E-CCEEEEEeCCCCCEecceEEEEcCCCC--ceeeCCCc--CcCCccceEEEE-CCEEEEECCcCCCCcccceEEEEeCC
Confidence 7 568999999986667889999999999 99999877 889999999888 56999999986666567899999987
Q ss_pred CCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC
Q 048754 446 TDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 446 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~ 525 (625)
+++ |+.+++ +|.+|.+|+++++++ +||++||....... ...+.+++||+. +.+|+.++.+
T Consensus 415 t~~--W~~~~~--~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~-~~~~~v~~yd~~--~~~W~~~~~~------------ 474 (534)
T PHA03098 415 TNK--WSKGSP--LPISHYGGCAIYHDG-KIYVIGGISYIDNI-KVYNIVESYNPV--TNKWTELSSL------------ 474 (534)
T ss_pred CCe--eeecCC--CCccccCceEEEECC-EEEEECCccCCCCC-cccceEEEecCC--CCceeeCCCC------------
Confidence 766 999876 788999999988877 99999998654321 124669999999 6799999765
Q ss_pred CCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 526 PPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 526 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
|.+|..++++.. +++|||+||.+... ..+++++||+ ++++|+.+.
T Consensus 475 ~~~r~~~~~~~~-~~~iyv~GG~~~~~-~~~~v~~yd~--~~~~W~~~~ 519 (534)
T PHA03098 475 NFPRINASLCIF-NNKIYVVGGDKYEY-YINEIEVYDD--KTNTWTLFC 519 (534)
T ss_pred CcccccceEEEE-CCEEEEEcCCcCCc-ccceeEEEeC--CCCEEEecC
Confidence 678888888888 99999999987543 3689999999 799999885
No 17
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=7e-32 Score=237.63 Aligned_cols=253 Identities=26% Similarity=0.390 Sum_probs=206.3
Q ss_pred ceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCC-----ccccEEEEECCCCCCEEEEcCCC-----------CCCC
Q 048754 345 EWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQG-----LLNDVFVLDLDAKQPTWIEVSGG-----------APPL 408 (625)
Q Consensus 345 ~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~d~~t~~~~W~~~~~~-----------~~p~ 408 (625)
.|+.- ..+ -+.|.+|+++.+ +.+||-|||+.... -.-|+.++|..+- +|.+++.. ..|-
T Consensus 3 ~WTVH-LeG-GPrRVNHAavaV-G~riYSFGGYCsGedy~~~~piDVH~lNa~~~--RWtk~pp~~~ka~i~~~yp~VPy 77 (392)
T KOG4693|consen 3 TWTVH-LEG-GPRRVNHAAVAV-GSRIYSFGGYCSGEDYDAKDPIDVHVLNAENY--RWTKMPPGITKATIESPYPAVPY 77 (392)
T ss_pred eEEEE-ecC-Ccccccceeeee-cceEEecCCcccccccccCCcceeEEeeccce--eEEecCcccccccccCCCCccch
Confidence 46643 123 344899999988 77999999995322 2347899998888 99988752 2467
Q ss_pred CCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCC-CCCCCCCcceEEEECCcEEEEEcCCcCCCC
Q 048754 409 PRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTS-WSPPSRLGHSLSVYGRTKVLMFGGLAKSGH 487 (625)
Q Consensus 409 ~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 487 (625)
.|++|+.+.+++ ++||.||.++.....|-++.||+++.. |.+.... ..|..|.+|+++++++ .+|||||+..+..
T Consensus 78 qRYGHtvV~y~d-~~yvWGGRND~egaCN~Ly~fDp~t~~--W~~p~v~G~vPgaRDGHsAcV~gn-~MyiFGGye~~a~ 153 (392)
T KOG4693|consen 78 QRYGHTVVEYQD-KAYVWGGRNDDEGACNLLYEFDPETNV--WKKPEVEGFVPGARDGHSACVWGN-QMYIFGGYEEDAQ 153 (392)
T ss_pred hhcCceEEEEcc-eEEEEcCccCcccccceeeeecccccc--ccccceeeecCCccCCceeeEECc-EEEEecChHHHHH
Confidence 799999999955 999999998877788999999987755 9887643 3688999999999988 9999999975432
Q ss_pred cccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCC--------CCCcEE
Q 048754 488 LRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLH--------SPSQLF 559 (625)
Q Consensus 488 ~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~--------~~~~v~ 559 (625)
..+++++++|+. +.+|+.+... +.+|.-|.+|++.++ ++.+|||||...... +-+.+.
T Consensus 154 --~FS~d~h~ld~~--TmtWr~~~Tk---------g~PprwRDFH~a~~~-~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~ 219 (392)
T KOG4693|consen 154 --RFSQDTHVLDFA--TMTWREMHTK---------GDPPRWRDFHTASVI-DGMMYIFGGRSDESGPFHSIHEQYCDTIM 219 (392)
T ss_pred --hhhccceeEecc--ceeeeehhcc---------CCCchhhhhhhhhhc-cceEEEeccccccCCCccchhhhhcceeE
Confidence 236899999999 8899999887 678888899999999 899999999764321 135777
Q ss_pred EEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCC-CCccCceEEEEccCCCCC
Q 048754 560 LLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGE-EWVLNELHELCLASKQDS 623 (625)
Q Consensus 560 ~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~-~~~~~d~~~~~~~~~~~~ 623 (625)
.||+ .+..|......+..|.+|..|++.++++ ++|+|||+++. +.-++|+|.||..++.++
T Consensus 220 ~ld~--~T~aW~r~p~~~~~P~GRRSHS~fvYng-~~Y~FGGYng~ln~HfndLy~FdP~t~~W~ 281 (392)
T KOG4693|consen 220 ALDL--ATGAWTRTPENTMKPGGRRSHSTFVYNG-KMYMFGGYNGTLNVHFNDLYCFDPKTSMWS 281 (392)
T ss_pred EEec--cccccccCCCCCcCCCcccccceEEEcc-eEEEecccchhhhhhhcceeecccccchhe
Confidence 8999 7999999988888999999999999985 99999999986 445899999999988765
No 18
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=5.7e-32 Score=258.40 Aligned_cols=305 Identities=28% Similarity=0.519 Sum_probs=236.7
Q ss_pred cccCeeEEee-ecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccC-CCCCCccceeEEE
Q 048754 288 LEAVCWRKFT-VRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVK-SSPPGRWGHTLSS 365 (625)
Q Consensus 288 ~~~~~W~~~~-~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-~~p~~r~~~~~~~ 365 (625)
+...+|+... ..|+.|.||.||.++++..-|.||||-+. ...+++++||..+ ++|...... ..|++...|..++
T Consensus 14 ~~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNE--GiiDELHvYNTat--nqWf~PavrGDiPpgcAA~Gfvc 89 (830)
T KOG4152|consen 14 KNVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNE--GIIDELHVYNTAT--NQWFAPAVRGDIPPGCAAFGFVC 89 (830)
T ss_pred hcccceEEEecccCCCCCccccchheeeeeeEEEecCCcc--cchhhhhhhcccc--ceeecchhcCCCCCchhhcceEe
Confidence 3456898776 46788999999999999999999999533 5577799999887 899976544 3666666666665
Q ss_pred EcCCEEEEEccCCCCC-ccccEEEEECCCCCCEEEEcC-----CCCCCCCCccceEEEEcCCEEEEEcCcCCCC------
Q 048754 366 LNGSWLVVFGGCGRQG-LLNDVFVLDLDAKQPTWIEVS-----GGAPPLPRSWHSSCIIEGSKLVVSGGCTDAG------ 433 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~-~~~~~~~~d~~t~~~~W~~~~-----~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~------ 433 (625)
. +.+||+|||....+ +.||+|.+. ...+.|.++. ++.+|.||.+|+...+ +++-|+|||..+..
T Consensus 90 d-GtrilvFGGMvEYGkYsNdLYELQ--asRWeWkrlkp~~p~nG~pPCPRlGHSFsl~-gnKcYlFGGLaNdseDpknN 165 (830)
T KOG4152|consen 90 D-GTRILVFGGMVEYGKYSNDLYELQ--ASRWEWKRLKPKTPKNGPPPCPRLGHSFSLV-GNKCYLFGGLANDSEDPKNN 165 (830)
T ss_pred c-CceEEEEccEeeeccccchHHHhh--hhhhhHhhcCCCCCCCCCCCCCccCceeEEe-ccEeEEeccccccccCcccc
Confidence 4 78999999996544 778877554 4444677654 4577999999999777 78999999985432
Q ss_pred --ceeceEEEEecC--CCCCceEEcCC-CCCCCCCCcceEEEEC-----CcEEEEEcCCcCCCCcccccCceEEEEcCCC
Q 048754 434 --VLLSDTYLLDLT--TDKPMWREIPT-SWSPPSRLGHSLSVYG-----RTKVLMFGGLAKSGHLRLRSGESYTIDLGDE 503 (625)
Q Consensus 434 --~~~~~~~~~d~~--~~~~~W~~~~~-~~~p~~r~~~~~~~~~-----~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~ 503 (625)
.++||+|++++. +.-.-|...-. +..|++|-.|+++++. ..++||+||..+-. +.|+|.+|++
T Consensus 166 vPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R-----LgDLW~Ldl~-- 238 (830)
T KOG4152|consen 166 VPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR-----LGDLWTLDLD-- 238 (830)
T ss_pred cchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc-----ccceeEEecc--
Confidence 378999999875 33456876543 4578999999999982 23899999987543 6999999999
Q ss_pred CCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCC-------------CCCCCCcEEEEeCCCCCCCe
Q 048754 504 EPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIA-------------GLHSPSQLFLLDPSEEKPSW 570 (625)
Q Consensus 504 ~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~-------------~~~~~~~v~~~d~~~~~~~W 570 (625)
+.+|.+.... |..|.||+-|++..+ +++||||||+-. .....+.+-++|+ ++..|
T Consensus 239 Tl~W~kp~~~---------G~~PlPRSLHsa~~I-GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNl--dt~~W 306 (830)
T KOG4152|consen 239 TLTWNKPSLS---------GVAPLPRSLHSATTI-GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNL--DTMAW 306 (830)
T ss_pred eeeccccccc---------CCCCCCcccccceee-cceeEEecceeeeeccccccccccceeeeccceeeeee--cchhe
Confidence 8899998776 678999999999999 999999999731 1223567778999 78999
Q ss_pred EEEcCC----CCCCCCCCcceEEEECCcEEEEEcCcCCCCC------ccCceEEEEccCC
Q 048754 571 RILNVP----GQPPKFAWGHSTCVVGGTRVLVLGGHTGEEW------VLNELHELCLASK 620 (625)
Q Consensus 571 ~~v~~~----~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~------~~~d~~~~~~~~~ 620 (625)
..+... ...|.+|.+|+++.+++ ++||..|.++-.+ --.|+|.||....
T Consensus 307 ~tl~~d~~ed~tiPR~RAGHCAvAigt-RlYiWSGRDGYrKAwnnQVCCkDlWyLdTekP 365 (830)
T KOG4152|consen 307 ETLLMDTLEDNTIPRARAGHCAVAIGT-RLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKP 365 (830)
T ss_pred eeeeeccccccccccccccceeEEecc-EEEEEeccchhhHhhccccchhhhhhhcccCC
Confidence 988642 23788999999999986 9999999886321 2468888886544
No 19
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.98 E-value=7.3e-31 Score=271.66 Aligned_cols=246 Identities=33% Similarity=0.566 Sum_probs=211.3
Q ss_pred CCCCCccceeEEEEcCCEEEEEccCCCCCcccc--EEEEECCCCCCEEEEcC-CCCCCCCCccceEEEEcCCEEEEEcCc
Q 048754 353 SSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLND--VFVLDLDAKQPTWIEVS-GGAPPLPRSWHSSCIIEGSKLVVSGGC 429 (625)
Q Consensus 353 ~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~--~~~~d~~t~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~iyv~GG~ 429 (625)
..|.+|++|+++.+ ++++|||||........+ +|++|..+. .|.... .+..|.+|++|+++.+ +++||+|||.
T Consensus 56 ~~p~~R~~hs~~~~-~~~~~vfGG~~~~~~~~~~dl~~~d~~~~--~w~~~~~~g~~p~~r~g~~~~~~-~~~l~lfGG~ 131 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLI-GNKLYVFGGYGSGDRLTDLDLYVLDLESQ--LWTKPAATGDEPSPRYGHSLSAV-GDKLYLFGGT 131 (482)
T ss_pred CCcchhhccceeEE-CCEEEEECCCCCCCccccceeEEeecCCc--ccccccccCCCCCcccceeEEEE-CCeEEEEccc
Confidence 37889999999998 778999999976665554 999999988 898654 4566899999999999 5699999998
Q ss_pred CCCCceeceEEEEecCCCCCceEEcCCCC-CCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCcee
Q 048754 430 TDAGVLLSDTYLLDLTTDKPMWREIPTSW-SPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWK 508 (625)
Q Consensus 430 ~~~~~~~~~~~~~d~~~~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~ 508 (625)
.......++++.||+.+.+ |..+...+ .|++|.+|+++++++ ++|||||...... .++++|+||+. +.+|.
T Consensus 132 ~~~~~~~~~l~~~d~~t~~--W~~l~~~~~~P~~r~~Hs~~~~g~-~l~vfGG~~~~~~---~~ndl~i~d~~--~~~W~ 203 (482)
T KOG0379|consen 132 DKKYRNLNELHSLDLSTRT--WSLLSPTGDPPPPRAGHSATVVGT-KLVVFGGIGGTGD---SLNDLHIYDLE--TSTWS 203 (482)
T ss_pred cCCCCChhheEeccCCCCc--EEEecCcCCCCCCcccceEEEECC-EEEEECCccCccc---ceeeeeeeccc--cccce
Confidence 8655568999999988877 99887654 589999999999996 9999999987664 36999999999 67899
Q ss_pred EeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceE
Q 048754 509 QLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHST 588 (625)
Q Consensus 509 ~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~ 588 (625)
++... +..|.||.+|+++++ +++++|+||.+.+...++|+|.||+ .+..|..+...+..|.+|++|++
T Consensus 204 ~~~~~---------g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~l~D~~~ldl--~~~~W~~~~~~g~~p~~R~~h~~ 271 (482)
T KOG0379|consen 204 ELDTQ---------GEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVYLNDVHILDL--STWEWKLLPTGGDLPSPRSGHSL 271 (482)
T ss_pred ecccC---------CCCCCCCCCceEEEE-CCeEEEEeccccCCceecceEeeec--ccceeeeccccCCCCCCcceeee
Confidence 99987 678999999999999 8999999998867777999999999 68999988888999999999999
Q ss_pred EEECCcEEEEEcCcCCCCC-ccCceEEEEccCCCCC
Q 048754 589 CVVGGTRVLVLGGHTGEEW-VLNELHELCLASKQDS 623 (625)
Q Consensus 589 ~~~~~~~i~i~GG~~~~~~-~~~d~~~~~~~~~~~~ 623 (625)
++.. ..++|+||...... .+.|+|.|++.+..++
T Consensus 272 ~~~~-~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~ 306 (482)
T KOG0379|consen 272 TVSG-DHLLLFGGGTDPKQEPLGDLYGLDLETLVWS 306 (482)
T ss_pred EEEC-CEEEEEcCCccccccccccccccccccccee
Confidence 9665 59999999887533 5899999998865543
No 20
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=9e-30 Score=272.46 Aligned_cols=263 Identities=17% Similarity=0.212 Sum_probs=205.3
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCC-ccccEEEEECCCC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQG-LLNDVFVLDLDAK 394 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~t~ 394 (625)
..+++.||.. .....+..|+... .+|..+ ...| .+..|+++++ +++||++||..... ..++++.||+.++
T Consensus 251 ~~~~~~~g~~---~~~~~~~~~~~~~--~~~~~~--~~~~-~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 321 (534)
T PHA03098 251 SIIYIHITMS---IFTYNYITNYSPL--SEINTI--IDIH-YVYCFGSVVL-NNVIYFIGGMNKNNLSVNSVVSYDTKTK 321 (534)
T ss_pred cceEeecccc---hhhceeeecchhh--hhcccc--cCcc-ccccceEEEE-CCEEEEECCCcCCCCeeccEEEEeCCCC
Confidence 3455656643 1223344566554 578766 3333 2445566666 66899999987544 5679999999999
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
+|..++.+ |.+|.+|+++.+ ++++|++||... ...++++++||+.+++ |+.+++ +|.+|++|+++++++
T Consensus 322 --~W~~~~~~--~~~R~~~~~~~~-~~~lyv~GG~~~-~~~~~~v~~yd~~~~~--W~~~~~--lp~~r~~~~~~~~~~- 390 (534)
T PHA03098 322 --SWNKVPEL--IYPRKNPGVTVF-NNRIYVIGGIYN-SISLNTVESWKPGESK--WREEPP--LIFPRYNPCVVNVNN- 390 (534)
T ss_pred --eeeECCCC--CcccccceEEEE-CCEEEEEeCCCC-CEecceEEEEcCCCCc--eeeCCC--cCcCCccceEEEECC-
Confidence 99999877 789999999888 569999999763 4467899999987766 999876 788999999988877
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCC-
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLH- 553 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~- 553 (625)
+||++||....+.. ++++++||+. +.+|+.+.++ |.+|.+|+++.. +++|||+||.+....
T Consensus 391 ~iYv~GG~~~~~~~---~~~v~~yd~~--t~~W~~~~~~------------p~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 452 (534)
T PHA03098 391 LIYVIGGISKNDEL---LKTVECFSLN--TNKWSKGSPL------------PISHYGGCAIYH-DGKIYVIGGISYIDNI 452 (534)
T ss_pred EEEEECCcCCCCcc---cceEEEEeCC--CCeeeecCCC------------CccccCceEEEE-CCEEEEECCccCCCCC
Confidence 99999997654432 5889999998 6799998765 788999998888 899999999864322
Q ss_pred -CCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCCCCC
Q 048754 554 -SPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQDS 623 (625)
Q Consensus 554 -~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~~~~ 623 (625)
..+.+++||+ .+++|+.+. .+|.+|..+++++++ ++|||+||.+... ..+++++||+.+++|.
T Consensus 453 ~~~~~v~~yd~--~~~~W~~~~---~~~~~r~~~~~~~~~-~~iyv~GG~~~~~-~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 453 KVYNIVESYNP--VTNKWTELS---SLNFPRINASLCIFN-NKIYVVGGDKYEY-YINEIEVYDDKTNTWT 516 (534)
T ss_pred cccceEEEecC--CCCceeeCC---CCCcccccceEEEEC-CEEEEEcCCcCCc-ccceeEEEeCCCCEEE
Confidence 2567999999 799999985 567788889888885 5999999998754 4789999999988774
No 21
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=9e-30 Score=257.06 Aligned_cols=251 Identities=22% Similarity=0.359 Sum_probs=188.4
Q ss_pred eeeec--ccCeeEEeeecCCCC-CCCcccceEEECCEEEEEcccCCCC-----CCCCCeEEEeccCCCCceEEcccCCCC
Q 048754 284 ELTTL--EAVCWRKFTVRGAVE-PSRCNFSACAAGNRLVLFGGEGVNM-----QPMDDTFVLNLDAANPEWRRVSVKSSP 355 (625)
Q Consensus 284 ~~~~~--~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~-----~~~~~~~~~~~~~~~~~W~~~~~~~~p 355 (625)
..|++ ...+|..++ ++| .+|.++++++++++|||+||+.... ..++++|+||+.+ ++|+++. ..+|
T Consensus 32 ~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~--~~W~~~~-~~~p 105 (346)
T TIGR03547 32 YKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK--NSWQKLD-TRSP 105 (346)
T ss_pred EEEECCCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCC--CEEecCC-CCCC
Confidence 34554 467899987 566 5799999999999999999985432 2478899999988 8999885 2456
Q ss_pred CCccceeEEEEcCCEEEEEccCCCCC----------------------------------ccccEEEEECCCCCCEEEEc
Q 048754 356 PGRWGHTLSSLNGSWLVVFGGCGRQG----------------------------------LLNDVFVLDLDAKQPTWIEV 401 (625)
Q Consensus 356 ~~r~~~~~~~~~~~~iyv~GG~~~~~----------------------------------~~~~~~~~d~~t~~~~W~~~ 401 (625)
.+|.+|+++++.+++||++||..... .++++++||+.++ +|+.+
T Consensus 106 ~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~--~W~~~ 183 (346)
T TIGR03547 106 VGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN--QWRNL 183 (346)
T ss_pred CcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCC--ceeEC
Confidence 77778877744477999999985321 2478999999999 99999
Q ss_pred CCCCCCC-CCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC-------CcceEEEECC
Q 048754 402 SGGAPPL-PRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR-------LGHSLSVYGR 473 (625)
Q Consensus 402 ~~~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r-------~~~~~~~~~~ 473 (625)
+.+ |. +|.+|+++.+ +++|||+||....+....+++.|+++..+.+|+.++. +|.+| .+|+++++++
T Consensus 184 ~~~--p~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~--m~~~r~~~~~~~~~~~a~~~~~ 258 (346)
T TIGR03547 184 GEN--PFLGTAGSAIVHK-GNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP--LPPPKSSSQEGLAGAFAGISNG 258 (346)
T ss_pred ccC--CCCcCCCceEEEE-CCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC--CCCCCCCccccccEEeeeEECC
Confidence 876 54 6888888777 6699999997654434456788887666667999886 55544 3555667766
Q ss_pred cEEEEEcCCcCCCCc-------------ccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCC
Q 048754 474 TKVLMFGGLAKSGHL-------------RLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG 540 (625)
Q Consensus 474 ~~l~v~GG~~~~~~~-------------~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~ 540 (625)
+||++||....... ......+.+||++ +.+|+.+..+ |.+|..++++++ ++
T Consensus 259 -~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~--~~~W~~~~~l------------p~~~~~~~~~~~-~~ 322 (346)
T TIGR03547 259 -VLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD--NGKWSKVGKL------------PQGLAYGVSVSW-NN 322 (346)
T ss_pred -EEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec--CCcccccCCC------------CCCceeeEEEEc-CC
Confidence 99999998632210 0011356789988 6699999866 778888877767 99
Q ss_pred EEEEEecCCCCCCCCCcEEEEeC
Q 048754 541 RIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 541 ~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
+|||+||.+......++|+.|..
T Consensus 323 ~iyv~GG~~~~~~~~~~v~~~~~ 345 (346)
T TIGR03547 323 GVLLIGGENSGGKAVTDVYLLSW 345 (346)
T ss_pred EEEEEeccCCCCCEeeeEEEEEe
Confidence 99999999876667888887754
No 22
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.97 E-value=2e-29 Score=251.56 Aligned_cols=236 Identities=16% Similarity=0.223 Sum_probs=181.1
Q ss_pred eeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCce----EEcccCCCCCCccceeEEEEc
Q 048754 292 CWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEW----RRVSVKSSPPGRWGHTLSSLN 367 (625)
Q Consensus 292 ~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W----~~~~~~~~p~~r~~~~~~~~~ 367 (625)
+|..+. .+|.+|..+++++++++||++||... ...++++++||+.+ .+| ..+ +++|.+|.+|+++++
T Consensus 52 ~W~~~~---~lp~~r~~~~~~~~~~~lyviGG~~~-~~~~~~v~~~d~~~--~~w~~~~~~~--~~lp~~~~~~~~~~~- 122 (323)
T TIGR03548 52 KWVKDG---QLPYEAAYGASVSVENGIYYIGGSNS-SERFSSVYRITLDE--SKEELICETI--GNLPFTFENGSACYK- 122 (323)
T ss_pred eEEEcc---cCCccccceEEEEECCEEEEEcCCCC-CCCceeEEEEEEcC--CceeeeeeEc--CCCCcCccCceEEEE-
Confidence 688876 78888988888999999999999854 34578899999987 566 544 678889999998877
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
+++|||+||.......+++++||+.++ +|+.+++++ ..+|..|+++++ +++|||+||.... ...++++||+.++
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p-~~~r~~~~~~~~-~~~iYv~GG~~~~--~~~~~~~yd~~~~ 196 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQ--EWFELPDFP-GEPRVQPVCVKL-QNELYVFGGGSNI--AYTDGYKYSPKKN 196 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCC--CeeECCCCC-CCCCCcceEEEE-CCEEEEEcCCCCc--cccceEEEecCCC
Confidence 568999999865556899999999999 999998762 247888888777 5699999997532 3467899998776
Q ss_pred CCceEEcCCC---CCCCCCCcceEEEECCcEEEEEcCCcCCCCc----------------------------ccccCceE
Q 048754 448 KPMWREIPTS---WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHL----------------------------RLRSGESY 496 (625)
Q Consensus 448 ~~~W~~~~~~---~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~----------------------------~~~~~~~~ 496 (625)
+ |+.++.. ..|..+.+++++++.+++||++||.+..... ....++++
T Consensus 197 ~--W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 274 (323)
T TIGR03548 197 Q--WQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKIL 274 (323)
T ss_pred e--eEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEE
Confidence 6 9998752 1344455666666665699999998642100 00136799
Q ss_pred EEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcE
Q 048754 497 TIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQL 558 (625)
Q Consensus 497 ~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v 558 (625)
+||+. +.+|+.+..+ +..+|.+++++.+ +++||++||........+++
T Consensus 275 ~yd~~--~~~W~~~~~~-----------p~~~r~~~~~~~~-~~~iyv~GG~~~pg~rt~~~ 322 (323)
T TIGR03548 275 IYNVR--TGKWKSIGNS-----------PFFARCGAALLLT-GNNIFSINGELKPGVRTPDI 322 (323)
T ss_pred EEECC--CCeeeEcccc-----------cccccCchheEEE-CCEEEEEeccccCCcCCcCc
Confidence 99999 6799999865 2358889988888 99999999987655545544
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=2.5e-29 Score=255.24 Aligned_cols=258 Identities=23% Similarity=0.341 Sum_probs=189.2
Q ss_pred eeeecc--cCeeEEeeecCCCC-CCCcccceEEECCEEEEEcccCC-C----CCCCCCeEEEeccCCCCceEEcccCCCC
Q 048754 284 ELTTLE--AVCWRKFTVRGAVE-PSRCNFSACAAGNRLVLFGGEGV-N----MQPMDDTFVLNLDAANPEWRRVSVKSSP 355 (625)
Q Consensus 284 ~~~~~~--~~~W~~~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~-~----~~~~~~~~~~~~~~~~~~W~~~~~~~~p 355 (625)
..|++. ++.|..++ ++| ++|.+++++.++++|||+||... . ...++++|+||+.+ ++|+++. +..|
T Consensus 53 ~~~d~~~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~--n~W~~~~-~~~p 126 (376)
T PRK14131 53 YKLDLNAPSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKT--NSWQKLD-TRSP 126 (376)
T ss_pred EEEECCCCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCC--CEEEeCC-CCCC
Confidence 345654 46899886 444 47999999999999999999864 1 13468899999988 7999985 2346
Q ss_pred CCccceeEEEEcCCEEEEEccCCCC----------------------------------CccccEEEEECCCCCCEEEEc
Q 048754 356 PGRWGHTLSSLNGSWLVVFGGCGRQ----------------------------------GLLNDVFVLDLDAKQPTWIEV 401 (625)
Q Consensus 356 ~~r~~~~~~~~~~~~iyv~GG~~~~----------------------------------~~~~~~~~~d~~t~~~~W~~~ 401 (625)
.++.+|+++++.+++||++||.... ...+++++||+.++ +|..+
T Consensus 127 ~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~--~W~~~ 204 (376)
T PRK14131 127 VGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTN--QWKNA 204 (376)
T ss_pred CcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCC--eeeEC
Confidence 7778888777457799999997531 12478999999999 99999
Q ss_pred CCCCCCC-CCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCc--------ceEEEEC
Q 048754 402 SGGAPPL-PRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLG--------HSLSVYG 472 (625)
Q Consensus 402 ~~~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~--------~~~~~~~ 472 (625)
..+ |. +|.+|+++.+ +++|||+||....+....+++.|+++..+.+|+.++. +|.+|.+ +.+++++
T Consensus 205 ~~~--p~~~~~~~a~v~~-~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~p~~~~~~~~~~~~~~~a~~~~ 279 (376)
T PRK14131 205 GES--PFLGTAGSAVVIK-GNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD--LPPAPGGSSQEGVAGAFAGYSN 279 (376)
T ss_pred CcC--CCCCCCcceEEEE-CCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC--CCCCCcCCcCCccceEeceeEC
Confidence 876 53 6777877777 6699999997655444566776655445566999886 5655532 2245566
Q ss_pred CcEEEEEcCCcCCCCc-------------ccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecC
Q 048754 473 RTKVLMFGGLAKSGHL-------------RLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPC 539 (625)
Q Consensus 473 ~~~l~v~GG~~~~~~~-------------~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~ 539 (625)
+ +||++||....... ......+.+||++ +.+|+.+..+ |.+|..++++.+ +
T Consensus 280 ~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~--~~~W~~~~~l------------p~~r~~~~av~~-~ 343 (376)
T PRK14131 280 G-VLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALV--NGKWQKVGEL------------PQGLAYGVSVSW-N 343 (376)
T ss_pred C-EEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEec--CCcccccCcC------------CCCccceEEEEe-C
Confidence 5 99999998642210 0001235679998 6699998765 788988888877 9
Q ss_pred CEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEE
Q 048754 540 GRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRI 572 (625)
Q Consensus 540 ~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~ 572 (625)
++|||+||...+....++|++|++ ..+.|..
T Consensus 344 ~~iyv~GG~~~~~~~~~~v~~~~~--~~~~~~~ 374 (376)
T PRK14131 344 NGVLLIGGETAGGKAVSDVTLLSW--DGKKLTV 374 (376)
T ss_pred CEEEEEcCCCCCCcEeeeEEEEEE--cCCEEEE
Confidence 999999998765566889999999 4556643
No 24
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=1.7e-27 Score=248.54 Aligned_cols=212 Identities=17% Similarity=0.253 Sum_probs=176.9
Q ss_pred eEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEE
Q 048754 311 ACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLD 390 (625)
Q Consensus 311 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d 390 (625)
.+..++.||++||... ....+.+++||+.+ ++|..+ +++|.+|..++++++ +++||++||.... +.++.||
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~--~~W~~~--~~m~~~r~~~~~v~~-~~~iYviGG~~~~---~sve~yd 337 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYIS--NNWIPI--PPMNSPRLYASGVPA-NNKLYVVGGLPNP---TSVERWF 337 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCC--CEEEEC--CCCCchhhcceEEEE-CCEEEEECCcCCC---CceEEEE
Confidence 3458999999999754 34567899999988 799987 678889998888877 6689999997532 5689999
Q ss_pred CCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEE
Q 048754 391 LDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSV 470 (625)
Q Consensus 391 ~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~ 470 (625)
+.++ +|..++++ |.+|.+|+++++ +++||++||.... .+.+++||+.+++ |+.+++ ++.+|..|++++
T Consensus 338 p~~n--~W~~~~~l--~~~r~~~~~~~~-~g~IYviGG~~~~---~~~ve~ydp~~~~--W~~~~~--m~~~r~~~~~~~ 405 (480)
T PHA02790 338 HGDA--AWVNMPSL--LKPRCNPAVASI-NNVIYVIGGHSET---DTTTEYLLPNHDQ--WQFGPS--TYYPHYKSCALV 405 (480)
T ss_pred CCCC--eEEECCCC--CCCCcccEEEEE-CCEEEEecCcCCC---CccEEEEeCCCCE--EEeCCC--CCCccccceEEE
Confidence 9999 99999987 889999999888 5599999997532 3678999987766 999886 888999999988
Q ss_pred ECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCC
Q 048754 471 YGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIA 550 (625)
Q Consensus 471 ~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~ 550 (625)
+++ +||++||. +.+||++ +.+|+.++++ |.+|..++++++ +++|||+||.+.
T Consensus 406 ~~~-~IYv~GG~------------~e~ydp~--~~~W~~~~~m------------~~~r~~~~~~v~-~~~IYviGG~~~ 457 (480)
T PHA02790 406 FGR-RLFLVGRN------------AEFYCES--SNTWTLIDDP------------IYPRDNPELIIV-DNKLLLIGGFYR 457 (480)
T ss_pred ECC-EEEEECCc------------eEEecCC--CCcEeEcCCC------------CCCccccEEEEE-CCEEEEECCcCC
Confidence 877 99999983 3478988 6799999876 788999998888 999999999864
Q ss_pred CCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 551 GLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 551 ~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
.. ..+.+++||+ .+++|+...
T Consensus 458 ~~-~~~~ve~Yd~--~~~~W~~~~ 478 (480)
T PHA02790 458 GS-YIDTIEVYNN--RTYSWNIWD 478 (480)
T ss_pred Cc-ccceEEEEEC--CCCeEEecC
Confidence 33 3578999999 799998753
No 25
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=5.2e-27 Score=244.92 Aligned_cols=206 Identities=15% Similarity=0.270 Sum_probs=174.4
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
.++.||++||.......+.++.||+.++ +|..++++ |.+|..++++.+ ++++|++||.... ++++.||+.+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~--~W~~~~~m--~~~r~~~~~v~~-~~~iYviGG~~~~----~sve~ydp~~ 340 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISN--NWIPIPPM--NSPRLYASGVPA-NNKLYVVGGLPNP----TSVERWFHGD 340 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCC--EEEECCCC--CchhhcceEEEE-CCEEEEECCcCCC----CceEEEECCC
Confidence 3679999999876667788999999999 99999988 789998998888 6699999997432 5789999866
Q ss_pred CCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCC
Q 048754 447 DKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVP 526 (625)
Q Consensus 447 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p 526 (625)
++ |+.+++ +|.+|..|+++++++ +||++||.... .+.+.+||+. +.+|+.++++ |
T Consensus 341 n~--W~~~~~--l~~~r~~~~~~~~~g-~IYviGG~~~~------~~~ve~ydp~--~~~W~~~~~m------------~ 395 (480)
T PHA02790 341 AA--WVNMPS--LLKPRCNPAVASINN-VIYVIGGHSET------DTTTEYLLPN--HDQWQFGPST------------Y 395 (480)
T ss_pred Ce--EEECCC--CCCCCcccEEEEECC-EEEEecCcCCC------CccEEEEeCC--CCEEEeCCCC------------C
Confidence 55 999986 888999999999977 99999997532 2568889998 6799999876 7
Q ss_pred CCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCC
Q 048754 527 PPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEE 606 (625)
Q Consensus 527 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~ 606 (625)
.+|..++++++ +++|||+||. +.+||+ ++++|+.++ .+|.+|..++++++++ +||++||.++..
T Consensus 396 ~~r~~~~~~~~-~~~IYv~GG~---------~e~ydp--~~~~W~~~~---~m~~~r~~~~~~v~~~-~IYviGG~~~~~ 459 (480)
T PHA02790 396 YPHYKSCALVF-GRRLFLVGRN---------AEFYCE--SSNTWTLID---DPIYPRDNPELIIVDN-KLLLIGGFYRGS 459 (480)
T ss_pred CccccceEEEE-CCEEEEECCc---------eEEecC--CCCcEeEcC---CCCCCccccEEEEECC-EEEEECCcCCCc
Confidence 89999988888 9999999983 568999 799999885 6788899999998875 999999988544
Q ss_pred CccCceEEEEccCCCCC
Q 048754 607 WVLNELHELCLASKQDS 623 (625)
Q Consensus 607 ~~~~d~~~~~~~~~~~~ 623 (625)
.++.+++||+.+++|+
T Consensus 460 -~~~~ve~Yd~~~~~W~ 475 (480)
T PHA02790 460 -YIDTIEVYNNRTYSWN 475 (480)
T ss_pred -ccceEEEEECCCCeEE
Confidence 3688999999999875
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=8e-27 Score=223.34 Aligned_cols=264 Identities=29% Similarity=0.477 Sum_probs=206.1
Q ss_pred eeeecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccC-----CCCCCc
Q 048754 284 ELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVK-----SSPPGR 358 (625)
Q Consensus 284 ~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-----~~p~~r 358 (625)
.+|+-.+++|......|+.|++...|..+..|.+||+|||+-....++||+|.+.... ..|+++++. .+|.||
T Consensus 60 HvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasR--WeWkrlkp~~p~nG~pPCPR 137 (830)
T KOG4152|consen 60 HVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASR--WEWKRLKPKTPKNGPPPCPR 137 (830)
T ss_pred hhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhh--hhHhhcCCCCCCCCCCCCCc
Confidence 3577788999999999999999999999999999999999988889999998776554 789998643 367789
Q ss_pred cceeEEEEcCCEEEEEccCCC---------CCccccEEEEECCCC--CCEEEE-cCCCCCCCCCccceEEEE-----cCC
Q 048754 359 WGHTLSSLNGSWLVVFGGCGR---------QGLLNDVFVLDLDAK--QPTWIE-VSGGAPPLPRSWHSSCII-----EGS 421 (625)
Q Consensus 359 ~~~~~~~~~~~~iyv~GG~~~---------~~~~~~~~~~d~~t~--~~~W~~-~~~~~~p~~r~~~~~~~~-----~~~ 421 (625)
.+|+...+ +++.|+|||... ..++||+|++++..+ -.-|.. +..+..|.+|-.|+++.+ ...
T Consensus 138 lGHSFsl~-gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~s 216 (830)
T KOG4152|consen 138 LGHSFSLV-GNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKS 216 (830)
T ss_pred cCceeEEe-ccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcc
Confidence 99999988 679999999842 227999999998744 446874 455677999999999988 124
Q ss_pred EEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCC-CCCCCCcceEEEECCcEEEEEcCCcCC---CCc-------cc
Q 048754 422 KLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSW-SPPSRLGHSLSVYGRTKVLMFGGLAKS---GHL-------RL 490 (625)
Q Consensus 422 ~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~l~v~GG~~~~---~~~-------~~ 490 (625)
++||+||+. +..+.|+|.+|+++-+ |.+....+ .|.||.-|+++.+++ ++|||||+-.. ... =.
T Consensus 217 kmvvyGGM~--G~RLgDLW~Ldl~Tl~--W~kp~~~G~~PlPRSLHsa~~IGn-KMyvfGGWVPl~~~~~~~~~hekEWk 291 (830)
T KOG4152|consen 217 KMVVYGGMS--GCRLGDLWTLDLDTLT--WNKPSLSGVAPLPRSLHSATTIGN-KMYVFGGWVPLVMDDVKVATHEKEWK 291 (830)
T ss_pred eEEEEcccc--cccccceeEEecceee--cccccccCCCCCCcccccceeecc-eeEEecceeeeeccccccccccceee
Confidence 799999974 5578999999987765 99987654 578999999999998 99999998531 100 02
Q ss_pred ccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCC------CCCcEEEEeC
Q 048754 491 RSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLH------SPSQLFLLDP 563 (625)
Q Consensus 491 ~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~------~~~~v~~~d~ 563 (625)
+.+.+-.++++ +..|..+-... ......|.+|++|+++++ +.+||+..|.+.-.. .-.|+|.+|.
T Consensus 292 CTssl~clNld--t~~W~tl~~d~-----~ed~tiPR~RAGHCAvAi-gtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT 362 (830)
T KOG4152|consen 292 CTSSLACLNLD--TMAWETLLMDT-----LEDNTIPRARAGHCAVAI-GTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT 362 (830)
T ss_pred eccceeeeeec--chheeeeeecc-----ccccccccccccceeEEe-ccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence 34566677887 67898775432 122237999999999999 999999999864221 1357777776
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.88 E-value=1.4e-20 Score=174.70 Aligned_cols=289 Identities=20% Similarity=0.325 Sum_probs=210.7
Q ss_pred CCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCC
Q 048754 301 AVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQ 380 (625)
Q Consensus 301 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~ 380 (625)
..|.+....+.+.+++.+||-=|.... ..|.+|++.....|+++. .-+-.+|.+..++++ +++||+|||.+..
T Consensus 32 dlPvg~KnG~Ga~ig~~~YVGLGs~G~-----afy~ldL~~~~k~W~~~a-~FpG~~rnqa~~a~~-~~kLyvFgG~Gk~ 104 (381)
T COG3055 32 DLPVGFKNGAGALIGDTVYVGLGSAGT-----AFYVLDLKKPGKGWTKIA-DFPGGARNQAVAAVI-GGKLYVFGGYGKS 104 (381)
T ss_pred CCCccccccccceecceEEEEeccCCc-----cceehhhhcCCCCceEcc-cCCCcccccchheee-CCeEEEeeccccC
Confidence 567776667888899999998774222 378999998778999884 224456777777766 6689999999643
Q ss_pred C-----ccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCC------------------------
Q 048754 381 G-----LLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTD------------------------ 431 (625)
Q Consensus 381 ~-----~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~------------------------ 431 (625)
. ..+++|+||+.++ +|.++... .|....+|+++.+.+.++|++||.+.
T Consensus 105 ~~~~~~~~nd~Y~y~p~~n--sW~kl~t~-sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~ 181 (381)
T COG3055 105 VSSSPQVFNDAYRYDPSTN--SWHKLDTR-SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII 181 (381)
T ss_pred CCCCceEeeeeEEecCCCC--hhheeccc-cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence 2 5799999999999 99999863 36678899999998879999999841
Q ss_pred ---------CCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 432 ---------AGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 432 ---------~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
+......++.|++.++. |+.+... +-.++++ +++++.++++.++-|.-..+. .+..++.++...
T Consensus 182 ~~yf~~~~~dy~~n~ev~sy~p~~n~--W~~~G~~-pf~~~aG-sa~~~~~n~~~lInGEiKpGL---Rt~~~k~~~~~~ 254 (381)
T COG3055 182 AHYFDKKAEDYFFNKEVLSYDPSTNQ--WRNLGEN-PFYGNAG-SAVVIKGNKLTLINGEIKPGL---RTAEVKQADFGG 254 (381)
T ss_pred HHHhCCCHHHhcccccccccccccch--hhhcCcC-cccCccC-cceeecCCeEEEEcceecCCc---cccceeEEEecc
Confidence 11244578889987766 9987631 2346666 455666668888888766554 367888888886
Q ss_pred CCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC------------------CCCCCcEEEEeCC
Q 048754 503 EEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG------------------LHSPSQLFLLDPS 564 (625)
Q Consensus 503 ~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~------------------~~~~~~v~~~d~~ 564 (625)
+..+|..+..++-+ .+..+....++.+-.. ++.++|.||.+.. ....++||.||
T Consensus 255 ~~~~w~~l~~lp~~-----~~~~~eGvAGaf~G~s-~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d-- 326 (381)
T COG3055 255 DNLKWLKLSDLPAP-----IGSNKEGVAGAFSGKS-NGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD-- 326 (381)
T ss_pred CceeeeeccCCCCC-----CCCCccccceecccee-CCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--
Confidence 67899999877411 1122233344444444 7889999997521 12367899998
Q ss_pred CCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 565 EEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 565 ~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
++.|+.+ |.+|.++.+..++..+ +.++++||.+..+..+..++.+.++..
T Consensus 327 --~g~Wk~~---GeLp~~l~YG~s~~~n-n~vl~IGGE~~~Gka~~~v~~l~~~gk 376 (381)
T COG3055 327 --NGSWKIV---GELPQGLAYGVSLSYN-NKVLLIGGETSGGKATTRVYSLSWDGK 376 (381)
T ss_pred --CCceeee---cccCCCccceEEEecC-CcEEEEccccCCCeeeeeEEEEEEcCc
Confidence 6799998 6888877666666665 699999999999888999998877543
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.76 E-value=9.3e-17 Score=149.41 Aligned_cols=255 Identities=23% Similarity=0.386 Sum_probs=187.2
Q ss_pred ccceeeeecc--cCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCC----CCCCCCeEEEeccCCCCceEEcccCC
Q 048754 280 RLARELTTLE--AVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVN----MQPMDDTFVLNLDAANPEWRRVSVKS 353 (625)
Q Consensus 280 ~~~~~~~~~~--~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~----~~~~~~~~~~~~~~~~~~W~~~~~~~ 353 (625)
...+...|+. ...|+++.. -+-.+|.+..+++++++||||||.... .+.++|+|+||+.+ ++|.++. ..
T Consensus 57 G~afy~ldL~~~~k~W~~~a~--FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~--nsW~kl~-t~ 131 (381)
T COG3055 57 GTAFYVLDLKKPGKGWTKIAD--FPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPST--NSWHKLD-TR 131 (381)
T ss_pred CccceehhhhcCCCCceEccc--CCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCC--Chhheec-cc
Confidence 3334444554 357999873 234469999999999999999997643 34578999999988 8999985 44
Q ss_pred CCCCccceeEEEEcCCEEEEEccCCC----------------------------------CCccccEEEEECCCCCCEEE
Q 048754 354 SPPGRWGHTLSSLNGSWLVVFGGCGR----------------------------------QGLLNDVFVLDLDAKQPTWI 399 (625)
Q Consensus 354 ~p~~r~~~~~~~~~~~~iyv~GG~~~----------------------------------~~~~~~~~~~d~~t~~~~W~ 399 (625)
.|..-.+++++...+.+||++||... ..+..+++.|++.++ .|+
T Consensus 132 sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n--~W~ 209 (381)
T COG3055 132 SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTN--QWR 209 (381)
T ss_pred cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccc--hhh
Confidence 56678889999887779999999832 014567999999999 999
Q ss_pred EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC-------CcceEEEEC
Q 048754 400 EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR-------LGHSLSVYG 472 (625)
Q Consensus 400 ~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r-------~~~~~~~~~ 472 (625)
.+... +-.++++ ++++..++++.++-|.-..+..+..++.+++..+..+|..++. .|.+. .++-.-..
T Consensus 210 ~~G~~-pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~--lp~~~~~~~eGvAGaf~G~s- 284 (381)
T COG3055 210 NLGEN-PFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSD--LPAPIGSNKEGVAGAFSGKS- 284 (381)
T ss_pred hcCcC-cccCccC-cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccC--CCCCCCCCccccceecccee-
Confidence 88743 2455665 5556678889999998888878888999998877788999875 33222 22222222
Q ss_pred CcEEEEEcCCcCCC---------------CcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEe
Q 048754 473 RTKVLMFGGLAKSG---------------HLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSM 537 (625)
Q Consensus 473 ~~~l~v~GG~~~~~---------------~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~ 537 (625)
++.+.+.||....+ ....-.+++|.+| ..+|+.+..+ |.++.+..++..
T Consensus 285 ~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d----~g~Wk~~GeL------------p~~l~YG~s~~~ 348 (381)
T COG3055 285 NGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD----NGSWKIVGEL------------PQGLAYGVSLSY 348 (381)
T ss_pred CCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc----CCceeeeccc------------CCCccceEEEec
Confidence 34888888865322 1112357888998 4599998665 778888888877
Q ss_pred cCCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 538 PCGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 538 ~~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
+++||++||...+......++.+..
T Consensus 349 -nn~vl~IGGE~~~Gka~~~v~~l~~ 373 (381)
T COG3055 349 -NNKVLLIGGETSGGKATTRVYSLSW 373 (381)
T ss_pred -CCcEEEEccccCCCeeeeeEEEEEE
Confidence 8999999999988877778877665
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.69 E-value=4e-18 Score=163.83 Aligned_cols=311 Identities=17% Similarity=0.302 Sum_probs=200.2
Q ss_pred ccCeeEEeeecC-------CCCCCCcccceEEECC--EEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCC-CCCCc
Q 048754 289 EAVCWRKFTVRG-------AVEPSRCNFSACAAGN--RLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKS-SPPGR 358 (625)
Q Consensus 289 ~~~~W~~~~~~~-------~~p~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-~p~~r 358 (625)
...+|.+++... .-|..|.||.|+...+ +||++||.+.- +.+.|+|.|+... +.|..+.... .|..|
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~-~~l~DFW~Y~v~e--~~W~~iN~~t~~PG~R 313 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT-QDLADFWAYSVKE--NQWTCINRDTEGPGAR 313 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccc-hhHHHHHhhcCCc--ceeEEeecCCCCCcch
Confidence 356787776544 5688899999998755 99999999654 6788999999988 7999987665 89999
Q ss_pred cceeEEEE-cCCEEEEEccCCCC------CccccEEEEECCCCCCEEEEcCC----CCCCCCCccceEEEEcC-CEEEEE
Q 048754 359 WGHTLSSL-NGSWLVVFGGCGRQ------GLLNDVFVLDLDAKQPTWIEVSG----GAPPLPRSWHSSCIIEG-SKLVVS 426 (625)
Q Consensus 359 ~~~~~~~~-~~~~iyv~GG~~~~------~~~~~~~~~d~~t~~~~W~~~~~----~~~p~~r~~~~~~~~~~-~~iyv~ 426 (625)
.+|-++.- ...++|+.|-+-+. ..-+|+|+||++++ .|..+.- ...|...+.|.+++..+ +.+|||
T Consensus 314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~--~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVf 391 (723)
T KOG2437|consen 314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTN--TWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVF 391 (723)
T ss_pred hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCc--eeEEecccccccCCcceeecceeeEecCcceEEEe
Confidence 99998864 23489999977322 24579999999999 9997652 13488999999988833 239999
Q ss_pred cCcCCCC--ceeceEEEEecCCCCCceEEcCCC-----C---CCCCCCcceEEEECC-cEEEEEcCCcCCCCcccccCce
Q 048754 427 GGCTDAG--VLLSDTYLLDLTTDKPMWREIPTS-----W---SPPSRLGHSLSVYGR-TKVLMFGGLAKSGHLRLRSGES 495 (625)
Q Consensus 427 GG~~~~~--~~~~~~~~~d~~~~~~~W~~~~~~-----~---~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~~ 495 (625)
||+.... ....-+|.||..... |..+... + ....|.+|++-...+ +.+|++||...... ++-.
T Consensus 392 GGr~~~~~e~~f~GLYaf~~~~~~--w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~E----l~L~ 465 (723)
T KOG2437|consen 392 GGRILTCNEPQFSGLYAFNCQCQT--WKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTE----LNLF 465 (723)
T ss_pred cCeeccCCCccccceEEEecCCcc--HHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceE----Eeeh
Confidence 9975332 345679999976655 8765321 1 133688888877654 48999999865433 2344
Q ss_pred EEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccce-EEEEecCCEEEEEecCCC-----CCCCCCcEEEEeCCCCCCC
Q 048754 496 YTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDH-VAVSMPCGRIIIFGGSIA-----GLHSPSQLFLLDPSEEKPS 569 (625)
Q Consensus 496 ~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~-~~~~~~~~~l~v~GG~~~-----~~~~~~~v~~~d~~~~~~~ 569 (625)
+.||+..++.. .+... ..+.....|++-... +...-....|.+.-|... .....+.+|+|++ .++.
T Consensus 466 f~y~I~~E~~~--~~s~~----~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i--~~~~ 537 (723)
T KOG2437|consen 466 FSYDIDSEHVD--IISDG----TKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDI--VRNS 537 (723)
T ss_pred hcceeccccch--hhhcc----CcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEe--cccc
Confidence 45555432111 11100 000111122222111 122222345666656532 1223578888888 5777
Q ss_pred eEEEcC----------------C-----CCCCCCCCcceEEEE-CCcEEEEEcCcCCCCC----ccCceEEEEcc
Q 048754 570 WRILNV----------------P-----GQPPKFAWGHSTCVV-GGTRVLVLGGHTGEEW----VLNELHELCLA 618 (625)
Q Consensus 570 W~~v~~----------------~-----~~~p~~r~~~~~~~~-~~~~i~i~GG~~~~~~----~~~d~~~~~~~ 618 (625)
|..+.- + -..|.+|++|+.++. .-+-+|++||..+... .+.|.|.++|-
T Consensus 538 w~cI~~I~~~~~d~dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I~ 612 (723)
T KOG2437|consen 538 WSCIYKIDQAAKDNDTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKIC 612 (723)
T ss_pred hhhHhhhHHhhccCCceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhhc
Confidence 776531 0 123557777775433 3468899999876532 57888877763
No 30
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=99.54 E-value=1.3e-13 Score=112.94 Aligned_cols=104 Identities=35% Similarity=0.518 Sum_probs=92.5
Q ss_pred CeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEEE
Q 048754 54 PTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLN 133 (625)
Q Consensus 54 ~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 133 (625)
|++++++|. +|+|+++|++|++++|+++++++|++...++. +.........+.+.+..+..+..+..+
T Consensus 1 p~~i~i~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~e~~~ 68 (104)
T PF13426_consen 1 PDGIFILDP---DGRILYVNPAFERLFGYSREELIGKSISDFFP---------EEDRPEFEEQIERALEEGGSWSGEVRL 68 (104)
T ss_dssp -SEEEEEET---TSBEEEE-HHHHHHHTS-HHHHTTSBGGGGCS---------TTSCHHHHHHHHHHHHHTSSEEEEEEE
T ss_pred CEEEEEECC---cCcEEehhHHHHHHHCcCHHHHcCCCcccccC---------cccchhhHHHHHHHHhcCCceeEEEEE
Confidence 579999999 99999999999999999999999999888864 234567778888888888889999999
Q ss_pred EeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeec
Q 048754 134 FKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEA 169 (625)
Q Consensus 134 ~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~ 169 (625)
.+++|+.+|+.+++.|+.+++|.+.+++++++|||+
T Consensus 69 ~~~~g~~~~~~~~~~~i~~~~g~~~~~i~~~~DiTe 104 (104)
T PF13426_consen 69 RRKDGETFWVEVSASPIRDEDGEITGIIGIFRDITE 104 (104)
T ss_dssp EETTSEEEEEEEEEEEEEETTSSEEEEEEEEEEEHH
T ss_pred EcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCC
Confidence 999999999999999999999999999999999996
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.46 E-value=3.8e-14 Score=136.76 Aligned_cols=210 Identities=21% Similarity=0.342 Sum_probs=147.0
Q ss_pred CceEEcccCC--------CCCCccceeEEEEcC-CEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCC-CCCCCccc
Q 048754 344 PEWRRVSVKS--------SPPGRWGHTLSSLNG-SWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGA-PPLPRSWH 413 (625)
Q Consensus 344 ~~W~~~~~~~--------~p~~r~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~-~p~~r~~~ 413 (625)
..|.++.... .|..|.||.++...+ +.||++||+++-.-+.|+|.|+...+ .|..+.... .|..|..|
T Consensus 239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~--~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKEN--QWTCINRDTEGPGARSCH 316 (723)
T ss_pred ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcc--eeEEeecCCCCCcchhhh
Confidence 4677765332 467799999998643 58999999999888999999999988 999887443 69999999
Q ss_pred eEEEE-cCCEEEEEcCcCCCC-----ceeceEEEEecCCCCCceEEcCC----CCCCCCCCcceEEEECCc-EEEEEcCC
Q 048754 414 SSCII-EGSKLVVSGGCTDAG-----VLLSDTYLLDLTTDKPMWREIPT----SWSPPSRLGHSLSVYGRT-KVLMFGGL 482 (625)
Q Consensus 414 ~~~~~-~~~~iyv~GG~~~~~-----~~~~~~~~~d~~~~~~~W~~~~~----~~~p~~r~~~~~~~~~~~-~l~v~GG~ 482 (625)
-++.. ...++|+.|-+-... ..-.++|+||+++++ |..+.- .+.|...+.|.|++.++. .+||+||+
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~--W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNT--WMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCce--eEEecccccccCCcceeecceeeEecCcceEEEecCe
Confidence 98665 234899999764332 134689999998877 987742 257888999999998872 49999998
Q ss_pred cCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEec-CCEEEEEecCCCCCCCCCcEEEE
Q 048754 483 AKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMP-CGRIIIFGGSIAGLHSPSQLFLL 561 (625)
Q Consensus 483 ~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~v~~~ 561 (625)
.-...- ..+..+|.||+. ...|..+...- .. ..+-......|.+|++-... +..+|++||..+. ..++-.+.|
T Consensus 395 ~~~~~e-~~f~GLYaf~~~--~~~w~~l~e~~-~~-~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~-~El~L~f~y 468 (723)
T KOG2437|consen 395 ILTCNE-PQFSGLYAFNCQ--CQTWKLLREDS-CN-AGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK-TELNLFFSY 468 (723)
T ss_pred eccCCC-ccccceEEEecC--CccHHHHHHHH-hh-cCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc-eEEeehhcc
Confidence 643321 236889999998 56888765431 00 01111223567788776665 4568888886432 223444456
Q ss_pred eC
Q 048754 562 DP 563 (625)
Q Consensus 562 d~ 563 (625)
++
T Consensus 469 ~I 470 (723)
T KOG2437|consen 469 DI 470 (723)
T ss_pred ee
Confidence 55
No 32
>PRK13560 hypothetical protein; Provisional
Probab=99.37 E-value=8.5e-13 Score=150.26 Aligned_cols=192 Identities=10% Similarity=-0.004 Sum_probs=139.0
Q ss_pred eeeEEecCCCCccccceeeecccccc--cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcc
Q 048754 24 QKCSFEGGGGGGGDDTELSLKPGLLF--YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPR 101 (625)
Q Consensus 24 ~~~~~~~~~~~~~~e~~~~~~~~~~~--~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~ 101 (625)
......+.+++|+.|++++..+..+. ++++++++++.|. +|+++++|+++++++||++++++|++..++.++
T Consensus 182 ~~g~~~DIT~rk~ae~~l~~~~~~l~~l~e~~~~~i~~~d~---~g~i~~~N~~~~~~~G~~~~e~~g~~~~~~~~~--- 255 (807)
T PRK13560 182 VDGFAEDITERKRAEERIDEALHFLQQLLDNIADPAFWKDE---DAKVFGCNDAACLACGFRREEIIGMSIHDFAPA--- 255 (807)
T ss_pred EEEEEEccchHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC---CCCEEEEhHHHHHHhCCCHHHHcCCcchhcCCc---
Confidence 34456788888887776654333222 4449999999999 999999999999999999999999998877532
Q ss_pred cccCCCCCChHHH-HHHHHHHHhCcceEEEEEEEeecCcceeEEEE--EEEeeCCCCCEEEEEEEEEeeecccccCCcch
Q 048754 102 AQRRHPLVDPVVV-SEIRRCLEEGIEFQGELLNFKKDGTPLVNRLR--LAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSY 178 (625)
Q Consensus 102 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~--~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~~~ 178 (625)
...... ......+..++....+.+..++||+.+|+.+. ..++.+.+|.+.+++++++|||++|++|+ .+
T Consensus 256 -------~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~~~~~g~~~g~~~~~~DITerk~~e~-~L 327 (807)
T PRK13560 256 -------QPADDYQEADAAKFDADGSQIIEAEFQNKDGRTRPVDVIFNHAEFDDKENHCAGLVGAITDISGRRAAER-EL 327 (807)
T ss_pred -------chhHHHHHHHHHHhccCCceEEEEEEEcCCCCEEEEEEEecceEEEcCCCCEEEEEEEEEechHHHHHHH-HH
Confidence 222222 33344455566667788889999999866654 45667889999999999999999998866 33
Q ss_pred hhhhhhhccccccccc---cccCCCCCCcc-cccccccccCc-hhHHHHhhhcccC
Q 048754 179 PVFKENCNQQYDQSAQ---YFSGGHSPLSQ-HQDICGILQLS-DEVLAHNILSRLT 229 (625)
Q Consensus 179 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~-n~~~~~~~g~~-~e~~~~~~~~~~~ 229 (625)
+..+++++..++.+.. ++|.+..++++ |+++++++|++ ++++|..+..+.+
T Consensus 328 ~~se~~l~~l~~~~~~~i~~~d~~g~i~~~nn~~~~~~~G~~~~e~~g~~~~~~~~ 383 (807)
T PRK13560 328 LEKEDMLRAIIEAAPIAAIGLDADGNICFVNNNAAERMLGWSAAEVMGKPLPGMDP 383 (807)
T ss_pred HHHHHHHHHHHHhCcccEEEEcCCCCEEEecCHHHHHHhCCCHHHHcCCCccccCh
Confidence 4445556666554433 33666666665 67888899999 7788766655433
No 33
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=99.32 E-value=1.1e-11 Score=102.55 Aligned_cols=109 Identities=25% Similarity=0.310 Sum_probs=90.8
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGE 130 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 130 (625)
++++++++++|. +|+|+++|+++.+++|++.++++|++..++.+ +...+.....+.+++..+.....+
T Consensus 2 ~~~p~~i~v~D~---~~~i~~~N~~~~~~~~~~~~~~~G~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 69 (110)
T PF08448_consen 2 DSSPDGIFVIDP---DGRIVYANQAAAELFGVSPEELIGRSLFDLLP---------PEDREEFQAALRRALAGGEPVFFE 69 (110)
T ss_dssp HHCSSEEEEEET---TSBEEEE-HHHHHHHTSTHHHHTTSBHHHHSC---------CGCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCCceeEEECC---CCEEEEEHHHHHHHhCCCHHHHhhccchhccc---------cchhhhhHHHHHHhhccCceEEEE
Confidence 348999999999 99999999999999999999999999888754 223455666777777777766655
Q ss_pred EEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccc
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKID 172 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~ 172 (625)
..... +|...|+.+.+.|+.+.+|.+.+++.+.+|||++|+
T Consensus 70 ~~~~~-~~~~~~~~~~~~Pi~~~~g~~~g~~~~~~DiT~~rr 110 (110)
T PF08448_consen 70 EILLR-DGEERWFEVSISPIFDEDGEVVGVLVIIRDITERRR 110 (110)
T ss_dssp EEECT-TSCEEEEEEEEEEEECTTTCEEEEEEEEEEECCHHH
T ss_pred EEEee-cCCcEEEEEEEEEeEcCCCCEEEEEEEEEECchhhC
Confidence 55444 899999999999999999999999999999999873
No 34
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=99.25 E-value=7e-12 Score=131.45 Aligned_cols=172 Identities=12% Similarity=0.041 Sum_probs=118.0
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCc-ceEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGI-EFQG 129 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 129 (625)
++++++++++|. +|+|+++|+++++++||+.+|++|++..++.+ |+..+.....+...+..+. .+..
T Consensus 3 ~~~~d~~~~~d~---~g~i~~~n~~~~~~~g~~~~el~G~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 70 (442)
T TIGR02040 3 ATAADVTLLLDA---EGVVREVAANPHHPSFEQLSEWEGRRWEEIVT---------AESVEKFELRLSEALRTGRGAVRV 70 (442)
T ss_pred cccCcEEEEECC---CCcEEEEEECCCcccccccccCCCCcHhHhhC---------cchHHHHHHHHHHHhccCCCcceE
Confidence 348899999999 99999999999999999999999999887754 3333333333444444433 3444
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCc-------------chhhhhhhhccccccccc--
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHV-------------SYPVFKENCNQQYDQSAQ-- 194 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~-------------~~~~~~~~~~~~~~~~~~-- 194 (625)
+.....++|..+|+.++..++.+. .+++++.+|||+.++.+++ .+...+++++..++.+..
T Consensus 71 e~~~~~~~g~~~~~~~~~~~~~~~----~~~~~i~rDi~~~~~~~~~l~~~~~~~e~~~~~l~~~e~r~~~l~e~~~~~i 146 (442)
T TIGR02040 71 ELNHIDPSSFELPMRFILVRLGAD----RGVLALGRDLRAVAELQQQLVAAQQAMERDYWTLREMETRYRVVLEVSSDAV 146 (442)
T ss_pred eeccCCCCCCccCeEEEEEEeCCC----CeEEEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceE
Confidence 555555666677777777766432 2567889999876554221 111223345555544432
Q ss_pred -cccC-CCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHh
Q 048754 195 -YFSG-GHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGS 238 (625)
Q Consensus 195 -~~~~-~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~ 238 (625)
++|. +..++++|+++++++||+ ++++|.++..++++++...+..
T Consensus 147 ~~~d~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~ 193 (442)
T TIGR02040 147 LLVDMSTGRIVEANSAAAALLGGVGQSLVGRAFPQEFEGRRREELML 193 (442)
T ss_pred EEEECCCCEEEEEcHHHHHHhCcCHHHHcCCCHHHhCCHHHHHHHHH
Confidence 3365 456779999999999999 8889888888888887665543
No 35
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.22 E-value=1.1e-11 Score=132.77 Aligned_cols=171 Identities=23% Similarity=0.316 Sum_probs=127.8
Q ss_pred ccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC
Q 048754 45 PGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG 124 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (625)
+.+++. +++++++.|. +|+++++|+++++++||++++++|+....+.. +.........+.+.+..+
T Consensus 7 ~~i~~~--~~~~i~~~d~---~g~~~~~N~~~~~~~G~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 72 (494)
T TIGR02938 7 RQTVDQ--APLAISITDL---KANILYANDAFTRITGYTKEEIIGKNESVLSN---------HTTPPEVYQALWGSLAEQ 72 (494)
T ss_pred HHHHHh--CCceEEEECC---CCcEEEEchhheeecCCCHHHHhCCCchhhcC---------CCCCHHHHHHHHHHHHhC
Confidence 344445 8899999999 99999999999999999999999987655532 223444556666667777
Q ss_pred cceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCcchhhhhhhhccccccc---cccccCCCC
Q 048754 125 IEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYDQS---AQYFSGGHS 201 (625)
Q Consensus 125 ~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 201 (625)
..+..+....+++|+.+|+...+.|+.+.+|.+.+++++.+|||+++++++. ++..++.++..++.. ..+++.+..
T Consensus 73 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIt~~k~~e~~-l~~~~~~~~~~~~~~~~~i~~~d~~~~ 151 (494)
T TIGR02938 73 KPWAGKLLNRRKDGELYLAELTVAPVLNEAGETTHFLGMHRDITELHRLEQV-VANQKLLIESVVDAAPVAFVLLDPTGR 151 (494)
T ss_pred CcccceeeccCCCccchhhheeeEEEECCCCCEEEEEEehhhhhHHHHHHHH-HHHHHHHHHHHHhcccceEEEEcCCCC
Confidence 7777788888899999999999999999999999999999999999877652 222333344444333 334477777
Q ss_pred CCcccccccccccCc-hhHHHHhhhcccCc
Q 048754 202 PLSQHQDICGILQLS-DEVLAHNILSRLTP 230 (625)
Q Consensus 202 ~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~ 230 (625)
++++|+++++++|+. .+..+..+...+++
T Consensus 152 i~~~N~~~~~~~g~~~~~~~~~~~~~~~~~ 181 (494)
T TIGR02938 152 VILDNQEYKKLATDLRVKEPAHTVLDLLRE 181 (494)
T ss_pred EEEechhHHHhhchhhhhHHHHHHHHHhhH
Confidence 779999999999987 55554444444443
No 36
>PRK09776 putative diguanylate cyclase; Provisional
Probab=99.22 E-value=3.9e-12 Score=149.46 Aligned_cols=189 Identities=17% Similarity=0.033 Sum_probs=140.6
Q ss_pred ecCCCCccccceeeecccccc--cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCC
Q 048754 29 EGGGGGGGDDTELSLKPGLLF--YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRH 106 (625)
Q Consensus 29 ~~~~~~~~~e~~~~~~~~~~~--~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~ 106 (625)
.+.+++++.|++++..+..++ .+..+++++.+|. ++.++++|+++.+++|+++++..+... +. +..|
T Consensus 393 ~DITerk~~e~~l~~~~~~~~~~~~~~~~~i~~~d~---~~~~~~~n~~~~~l~G~~~~~~~~~~~--~~------~~~~ 461 (1092)
T PRK09776 393 EDINELKRTEQVNERLMERITLANEAGGIGIWEWDL---KPNIISWDKRMFELYEIPPHIKPTWQV--WY------ACLH 461 (1092)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhcCceEEEEec---CCCeEeeCHHHHHHhCCCcccCCCHHH--HH------HhcC
Confidence 455666766666554433222 3448889999999 999999999999999999888433211 10 1134
Q ss_pred CCCChHHHHHHHHHHHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCcchhhhhhhhc
Q 048754 107 PLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCN 186 (625)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~~~~ 186 (625)
|++.......+.+.+..+..+..|.+.+++|| ..|+.....++.+.+|.+.+++++.+|||++|++++. ++..+++++
T Consensus 462 p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG-~~w~~~~~~~~~d~~G~~~~~ig~~~DITerk~~e~~-L~~~~~~l~ 539 (1092)
T PRK09776 462 PEDRQRVEKEIRDALQGRSPFKLEFRIVVKDG-VRHIRALANRVLNKDGEVERLLGINMDMTEVRQLNEA-LFQEKERLH 539 (1092)
T ss_pred HhHHHHHHHHHHHHHhcCCCeeEEEEEEcCCc-eEEEEEeeEEEECCCCCEEEEEeeeeehhHHHHHHHH-HHHHHHHHH
Confidence 55555555667777778888889999999999 9999999999999999999999999999999987652 233444455
Q ss_pred cccccccc---cccCCCCCCcccccccccccCc-hhHHHHhhhcccCc
Q 048754 187 QQYDQSAQ---YFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTP 230 (625)
Q Consensus 187 ~~~~~~~~---~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~ 230 (625)
..++.... ..|.+..++++|+++++++|++ ++++|.++..+++.
T Consensus 540 ~~l~~~~~~i~~~D~~g~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~~ 587 (1092)
T PRK09776 540 ITLDSIGEAVVCTDMAMKVTFMNPVAEKMTGWTQEEALGVPLLTVLHI 587 (1092)
T ss_pred HHHhccccEEEEECCCCeEEEEcHHHHHHhCCCHHHHcCCCHHHHccc
Confidence 44444333 3477777789999999999999 88888777666543
No 37
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=99.21 E-value=8.8e-11 Score=97.67 Aligned_cols=108 Identities=29% Similarity=0.401 Sum_probs=85.2
Q ss_pred cccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCc
Q 048754 46 GLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGI 125 (625)
Q Consensus 46 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (625)
.+++. ++++++++|. +|+|+++|+++++++|+++++++|++..++.. +.+.......+.+.+..+.
T Consensus 5 ~i~~~--~~~~i~~~d~---~g~I~~~N~a~~~l~g~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 70 (113)
T PF00989_consen 5 AILEN--SPDGIFVIDE---DGRILYVNQAAEELLGYSREELIGKSLFDLIH---------PEDRRELRERLRQALSQGE 70 (113)
T ss_dssp HHHHC--SSSEEEEEET---TSBEEEECHHHHHHHSS-HHHHTTSBGGGGCS---------GGGHHHHHHHHHHHHHHCC
T ss_pred HHHhc--CCceEEEEeC---cCeEEEECHHHHHHHccCHHHHcCCcHHHhcC---------chhhHHHHHHHHHHHHcCC
Confidence 34444 8999999999 99999999999999999999999999888753 2222345566666666655
Q ss_pred ceEE-EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEee
Q 048754 126 EFQG-ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFS 167 (625)
Q Consensus 126 ~~~~-e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Di 167 (625)
.... +.....++|+.+|+.+...|+.+.++.+.+++++.+||
T Consensus 71 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~DI 113 (113)
T PF00989_consen 71 SGESFEVRFRLRDGRPRWVEVRASPVRDEDGQIIGILVIFRDI 113 (113)
T ss_dssp HECEEEEEEEETTSCEEEEEEEEEEEEETTEEEEEEEEEEEE-
T ss_pred CceeEEEEEEecCCcEEEEEEEEEEEEeCCCCEEEEEEEEEeC
Confidence 4443 44444469999999999999999999999999999997
No 38
>PRK09776 putative diguanylate cyclase; Provisional
Probab=99.18 E-value=1.4e-11 Score=144.83 Aligned_cols=180 Identities=16% Similarity=0.168 Sum_probs=133.5
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (625)
.+.+++. ++++|++.|. +|+++++|+++++++||+++|++|++..++. ||++.......+.+.+..
T Consensus 285 ~~~l~e~--~~~~i~~~d~---dG~i~~~N~~~~~l~G~~~~el~g~~~~~~~---------~~~d~~~~~~~~~~~~~~ 350 (1092)
T PRK09776 285 FRNAMEY--SAIGMALVGT---EGQWLQVNKALCQFLGYSQEELRGLTFQQLT---------WPEDLNKDLQQVEKLLSG 350 (1092)
T ss_pred HHHHHHh--CCceEEEEcC---CCcEEehhHHHHHHhCCCHHHHccCCceecc---------CcchhHhHHHHHHHHHcC
Confidence 3444444 8999999999 9999999999999999999999999877664 344444444444444332
Q ss_pred C-cceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCcchhhhhhhhccccccccc---cccCC
Q 048754 124 G-IEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYDQSAQ---YFSGG 199 (625)
Q Consensus 124 ~-~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~~~~~~~~~~~~---~~~~~ 199 (625)
. ..+..+.+..++||+..|+.....++.+.+|.+.+++++.+|||++|++|+. .+..+++++..++.... .+|.+
T Consensus 351 ~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~~~g~~~~~i~~~~DITerk~~e~~-l~~~~~~~~~~~~~~~~~i~~~d~~ 429 (1092)
T PRK09776 351 EINSYSMEKRYYRRDGEVVWALLAVSLVRDTDGTPLYFIAQIEDINELKRTEQV-NERLMERITLANEAGGIGIWEWDLK 429 (1092)
T ss_pred CccceeeeeEEEcCCCCEEEEEEEEEEEECCCCCEeeehhhHHhhHHHHHHHHH-HHHHHHHHHHHHHhcCceEEEEecC
Confidence 2 3456788889999999999999999999999999999999999999987662 33344445544433322 33777
Q ss_pred CCCCcccccccccccCc-hhHHH-HhhhcccCchhhhhHHh
Q 048754 200 HSPLSQHQDICGILQLS-DEVLA-HNILSRLTPRDVASIGS 238 (625)
Q Consensus 200 ~~~~~~n~~~~~~~g~~-~e~~~-~~~~~~~~~~~~~~~~~ 238 (625)
...+++|+++++++|++ ++..+ ..+...++|++...+..
T Consensus 430 ~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~~p~d~~~~~~ 470 (1092)
T PRK09776 430 PNIISWDKRMFELYEIPPHIKPTWQVWYACLHPEDRQRVEK 470 (1092)
T ss_pred CCeEeeCHHHHHHhCCCcccCCCHHHHHHhcCHhHHHHHHH
Confidence 77789999999999999 44322 23556788887766543
No 39
>PLN02772 guanylate kinase
Probab=99.09 E-value=5e-10 Score=109.64 Aligned_cols=94 Identities=20% Similarity=0.274 Sum_probs=83.3
Q ss_pred CCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCc
Q 048754 523 AVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGH 602 (625)
Q Consensus 523 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~ 602 (625)
|..+.++.+++++.+ ++++||+||.+......+++++||. .+++|+.....|..|.+|.+|+++++++++|+|+++-
T Consensus 19 ~~~~~~~~~~tav~i-gdk~yv~GG~~d~~~~~~~v~i~D~--~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 19 GFGVKPKNRETSVTI-GDKTYVIGGNHEGNTLSIGVQILDK--ITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred CccCCCCCcceeEEE-CCEEEEEcccCCCccccceEEEEEC--CCCcEecccccCCCCCCCCcceEEEECCceEEEEeCC
Confidence 445678899999999 9999999998876556899999999 7999999999999999999999999998899999988
Q ss_pred CCCCCccCceEEEEccCCCC
Q 048754 603 TGEEWVLNELHELCLASKQD 622 (625)
Q Consensus 603 ~~~~~~~~d~~~~~~~~~~~ 622 (625)
.+.+ +++|.|.++|.--
T Consensus 96 ~~~~---~~~w~l~~~t~~~ 112 (398)
T PLN02772 96 SAPD---DSIWFLEVDTPFV 112 (398)
T ss_pred CCCc---cceEEEEcCCHHH
Confidence 7765 8999999987543
No 40
>PF13964 Kelch_6: Kelch motif
Probab=99.02 E-value=7.4e-10 Score=76.21 Aligned_cols=50 Identities=22% Similarity=0.421 Sum_probs=44.9
Q ss_pred CCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCc
Q 048754 305 SRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGR 358 (625)
Q Consensus 305 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r 358 (625)
||.+|++++++++|||+||.......++++++||+.+ ++|+++ +++|.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t--~~W~~~--~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPET--NTWEQL--PPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCC--CcEEEC--CCCCCCC
Confidence 5899999999999999999977677899999999999 799988 6788776
No 41
>PF13964 Kelch_6: Kelch motif
Probab=99.00 E-value=1.2e-09 Score=75.12 Aligned_cols=49 Identities=35% Similarity=0.601 Sum_probs=43.2
Q ss_pred CccceeEEEEcCCEEEEEccCCC-CCccccEEEEECCCCCCEEEEcCCCCCCCCC
Q 048754 357 GRWGHTLSSLNGSWLVVFGGCGR-QGLLNDVFVLDLDAKQPTWIEVSGGAPPLPR 410 (625)
Q Consensus 357 ~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r 410 (625)
||.+|+++++ +++|||+||... ...++++++||+.|+ +|+.+++| |.+|
T Consensus 1 pR~~~s~v~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~m--p~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVV-GGKIYVFGGYDNSGKYSNDVERYDPETN--TWEQLPPM--PTPR 50 (50)
T ss_pred CCccCEEEEE-CCEEEEECCCCCCCCccccEEEEcCCCC--cEEECCCC--CCCC
Confidence 6889999888 568999999987 678999999999999 99999987 6665
No 42
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=98.99 E-value=4.7e-10 Score=117.67 Aligned_cols=161 Identities=12% Similarity=0.111 Sum_probs=106.3
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
++.++++++++|. .+|+|+++|+++++++||++++++|++...+.+ |.+.......+......+.....
T Consensus 139 ~e~~~~~i~~~d~--~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~---------~~~~~~~~~~l~~~~~~g~~~~~ 207 (442)
T TIGR02040 139 LEVSSDAVLLVDM--STGRIVEANSAAAALLGGVGQSLVGRAFPQEFE---------GRRREELMLTLRNVRATGSAAPV 207 (442)
T ss_pred HhhCCceEEEEEC--CCCEEEEEcHHHHHHhCcCHHHHcCCCHHHhCC---------HHHHHHHHHHHHHHHhcCCCcce
Confidence 3448999999985 159999999999999999999999998776643 33333344455555555554444
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCcchhhhhhhhcccccc---ccccccCCCCCCccc
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYDQ---SAQYFSGGHSPLSQH 206 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~n 206 (625)
+.. .++|...| .+.+.++.. ++. ..+++..+||++++++++. .+++++..++. ...++|.++.++++|
T Consensus 208 ~~~--~~~~~~~~-~~~~~~~~~-~~~-~~~l~~~~dit~~~~~e~~----~~~~~~~l~e~~~d~I~v~D~~G~I~~~N 278 (442)
T TIGR02040 208 RIL--LRRSQKRL-LVVVSVFRQ-DGE-SLFLCQLSPAGATQPVGDE----LSENLARLYHEAPDAIVFSDADGTIRGAN 278 (442)
T ss_pred EEE--EcCCCeEE-EEEEEEEEe-CCc-eEEEEEEcccchhhhhhHH----HHHHHHHHHHhCCceEEEEcCCCcEEehh
Confidence 443 33343333 345555553 333 3567778899998766541 22234444433 333457777788999
Q ss_pred ccccccccCc--hhHHHHhhhcccCc
Q 048754 207 QDICGILQLS--DEVLAHNILSRLTP 230 (625)
Q Consensus 207 ~~~~~~~g~~--~e~~~~~~~~~~~~ 230 (625)
+++++++|++ ++++|.++..++++
T Consensus 279 ~a~~~l~G~~~~~~l~G~~~~~~~~~ 304 (442)
T TIGR02040 279 EAFLELTDSSSLEAVRGRTLDRWLGR 304 (442)
T ss_pred HHHHHHhCCCChHHHcCCCHHHHhCC
Confidence 9999999996 56888877666653
No 43
>PRK13559 hypothetical protein; Provisional
Probab=98.98 E-value=3e-09 Score=108.67 Aligned_cols=117 Identities=38% Similarity=0.642 Sum_probs=95.9
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
++.++++++++|....+|.++++|+++++++||+.++++|++...+.. +.........+...+..+..+..
T Consensus 49 ~e~~~~~i~i~D~~~~~g~i~~~N~a~~~l~G~~~~e~iG~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~ 119 (361)
T PRK13559 49 MEQTRMAMCITDPHQPDLPIVLANQAFLDLTGYAAEEVVGRNCRFLQG---------AATDPIAVAKIRAAIAAEREIVV 119 (361)
T ss_pred HHhCCCcEEEecCCCCCCcEEEEchHHHHHhCCCHHHHcCCChhhhcC---------CCCCHHHHHHHHHHhccCCceEE
Confidence 344889999999622356899999999999999999999998766642 22344445566667777777778
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+....++||..+|+.+...|+.+.+|.+.+++++.+|||++|++++
T Consensus 120 e~~~~~~dG~~~~~~~~~~~i~d~~G~~~~~v~~~~DITerk~~e~ 165 (361)
T PRK13559 120 ELLNYRKDGEPFWNALHLGPVYGEDGRLLYFFGSQWDVTDIRAVRA 165 (361)
T ss_pred EEEEEcCCCCEEEEEEEEEEEEcCCCCEEEeeeeeeehhcchhhHH
Confidence 8888899999999999999999999999999999999999987654
No 44
>PRK13560 hypothetical protein; Provisional
Probab=98.98 E-value=1e-09 Score=125.16 Aligned_cols=204 Identities=19% Similarity=0.242 Sum_probs=133.4
Q ss_pred EEecCCCCccccceeeecccccc--cCCCCeeEEEecCCCCCCCEEEE-ehHHHHHhCCCchhhcCCCCcccccCCcc--
Q 048754 27 SFEGGGGGGGDDTELSLKPGLLF--YPTTPTSFVVADAFDPDFPIIYV-NKVFEIFTGYRADEVLGRNCRFLQYRDPR-- 101 (625)
Q Consensus 27 ~~~~~~~~~~~e~~~~~~~~~~~--~~~~~~~i~~~d~~~~~g~i~~~-N~~~~~~~G~~~~e~~g~~~~~l~~~~~~-- 101 (625)
.+.+.+++++.|.+++..+..+. ++.++++++++|. +|.++++ |+++++++||++++++|++...+.+....
T Consensus 313 ~~~DITerk~~e~~L~~se~~l~~l~~~~~~~i~~~d~---~g~i~~~nn~~~~~~~G~~~~e~~g~~~~~~~~~~~~~~ 389 (807)
T PRK13560 313 AITDISGRRAAERELLEKEDMLRAIIEAAPIAAIGLDA---DGNICFVNNNAAERMLGWSAAEVMGKPLPGMDPELNEEF 389 (807)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHHHhCcccEEEEcC---CCCEEEecCHHHHHHhCCCHHHHcCCCccccChhhhhhh
Confidence 56788888888877765443332 4458999999999 9999987 67888899999999999876554321100
Q ss_pred ----cccCCCCCChHHH--HHHHHHHHhCcceE-EEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccC
Q 048754 102 ----AQRRHPLVDPVVV--SEIRRCLEEGIEFQ-GELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLN 174 (625)
Q Consensus 102 ----~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e 174 (625)
....+|+..+... ..+.+.+..+..+. .+....+++|...|+.+...|+.+.+|.+.+++++.+|||++|++|
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~p~~d~~g~~~~~~~~~~DITerk~~E 469 (807)
T PRK13560 390 WCGDFQEWYPDGRPMAFDACPMAKTIKGGKIFDGQEVLIEREDDGPADCSAYAEPLHDADGNIIGAIALLVDITERKQVE 469 (807)
T ss_pred hhchhhhcCCcCCcchhhhhhHHHHHhcCCcccCceEEEEcCCCCeEEEEEEEeeeECCCCCEEEEEEEeehhhhHHHHH
Confidence 0011122111111 11233345555443 4677788999999999999999999999999999999999999876
Q ss_pred Ccchhhhhhhhccccccccc---cccCC-CCCCcccccccccccCc-hhHHH--HhhhcccCchhhhhHHh
Q 048754 175 HVSYPVFKENCNQQYDQSAQ---YFSGG-HSPLSQHQDICGILQLS-DEVLA--HNILSRLTPRDVASIGS 238 (625)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~n~~~~~~~g~~-~e~~~--~~~~~~~~~~~~~~~~~ 238 (625)
+.. ++ ....++.+.. .++.. ...+.+|.+...++||+ +++++ ..+...++|++...+..
T Consensus 470 ~~L----~~-~~~~~e~~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~~e~~~~~~~~~~~~~p~d~~~~~~ 535 (807)
T PRK13560 470 EQL----LL-ANLIVENSPLVLFRWKAEEGWPVELVSKNITQFGYEPDEFISGKRMFAAIIHPADLEQVAA 535 (807)
T ss_pred HHH----HH-HHHHHhcCCceEEEEecCCCceEEEecchhhhcCCCHHHhhcccchHhhhcChhhHHHHHH
Confidence 522 11 1122222222 12222 23345666677889999 66654 23556788888766543
No 45
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.98 E-value=2.2e-08 Score=90.87 Aligned_cols=169 Identities=21% Similarity=0.229 Sum_probs=108.8
Q ss_pred EEEEEcCcCCCCceeceEEEEecCCCC-Cc-----eEEcC-CCCCCCCCCcceEEEEC---CcEEEEEcCCcCCC-----
Q 048754 422 KLVVSGGCTDAGVLLSDTYLLDLTTDK-PM-----WREIP-TSWSPPSRLGHSLSVYG---RTKVLMFGGLAKSG----- 486 (625)
Q Consensus 422 ~iyv~GG~~~~~~~~~~~~~~d~~~~~-~~-----W~~~~-~~~~p~~r~~~~~~~~~---~~~l~v~GG~~~~~----- 486 (625)
..+|.||.+.+++.++++|+..+++.. ++ .++-. .+..|.+||+|++.++. +...++|||...-.
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 467779999999999999999876543 11 11111 14579999999998874 33578999986421
Q ss_pred -----CcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCC-CCCCCCcEEE
Q 048754 487 -----HLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIA-GLHSPSQLFL 560 (625)
Q Consensus 487 -----~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~-~~~~~~~v~~ 560 (625)
........++.+|++.+..+-..++.+ ...-++|.+++- +|.+|++||..- +....+.+++
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lpEl------------~dG~SFHvslar-~D~VYilGGHsl~sd~Rpp~l~r 186 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLPEL------------QDGQSFHVSLAR-NDCVYILGGHSLESDSRPPRLYR 186 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccchhh------------cCCeEEEEEEec-CceEEEEccEEccCCCCCCcEEE
Confidence 122345788889988543222233322 456678888888 999999999853 3344788888
Q ss_pred EeCC--CCCCCeEEEcCCCCCCCCCCcceEEEEC--CcEEEEEcCcCCCCC
Q 048754 561 LDPS--EEKPSWRILNVPGQPPKFAWGHSTCVVG--GTRVLVLGGHTGEEW 607 (625)
Q Consensus 561 ~d~~--~~~~~W~~v~~~~~~p~~r~~~~~~~~~--~~~i~i~GG~~~~~~ 607 (625)
+.++ ..+..-+ + ..++.+..-.++++.. .+..+|+|||..+.+
T Consensus 187 lkVdLllGSP~vs-C---~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQ 233 (337)
T PF03089_consen 187 LKVDLLLGSPAVS-C---TVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQ 233 (337)
T ss_pred EEEeecCCCceeE-E---EECCCCceEeeeeEeecCCCceEEEecccccce
Confidence 7762 1111111 1 1234444455555553 479999999987753
No 46
>PRK13557 histidine kinase; Provisional
Probab=98.97 E-value=1.7e-09 Score=117.20 Aligned_cols=122 Identities=34% Similarity=0.599 Sum_probs=101.0
Q ss_pred ecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHH
Q 048754 43 LKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122 (625)
Q Consensus 43 ~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (625)
.+..+++. ++++|+++|....+|+|+++|++|++++||+.+|++|++...+.. |.........+...+.
T Consensus 31 ~~~~~~~~--~~~~i~v~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~l~~---------~~~~~~~~~~~~~~~~ 99 (540)
T PRK13557 31 IFFAAVET--TRMPMIVTDPNQPDNPIVFANRAFLEMTGYAAEEIIGNNCRFLQG---------PETDRATVAEVRDAIA 99 (540)
T ss_pred HHHHHHHh--CcCcEEEEcCCCCCCCEEEEcHHHHHHhCCCHHHhcCCChHhhcC---------CCCCHHHHHHHHHHHH
Confidence 34444444 889999998533478999999999999999999999999877753 3445556667777777
Q ss_pred hCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 123 EGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 123 ~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.+..+..+.+..+++|+.+|+.+.+.|+.+.+|.+++++++.+|||+++++++
T Consensus 100 ~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~~~g~~~~~~~~~~dit~~~~~e~ 152 (540)
T PRK13557 100 ERREIATEILNYRKDGSSFWNALFVSPVYNDAGDLVYFFGSQLDVSRRRDAED 152 (540)
T ss_pred cCCCceEEEEEEeCCCCEEEEEEEEEEeECCCCCEEEEEEEecChHHHHHHHH
Confidence 77777788888899999999999999999999999999999999999887654
No 47
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=98.94 E-value=6e-10 Score=125.76 Aligned_cols=114 Identities=16% Similarity=0.183 Sum_probs=96.5
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
+++++++|++.|. +|+|+++|+++++++|++.++++|++..+++. |.............+..+.....
T Consensus 161 l~~~~~~i~~~D~---~g~i~~~N~a~~~l~G~~~~eliG~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~ 228 (779)
T PRK11091 161 LDASPDLVYYRNE---DGEFSGCNRAMELLTGKSEKQLIGLTPKDVYS---------PEAAEKVIETDEKVFRHNVSLTY 228 (779)
T ss_pred HhcCcceEEEECC---CCcEEeEcHHHHHHhCcCHHHHcCCChHHhCC---------HHHHHHHHHHHHHHHhcCCCeEE
Confidence 3449999999999 99999999999999999999999998887753 22233344445556667777888
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+.....++|+..|+.+...|+.+.+|.+.+++++.+|||++|++++
T Consensus 229 e~~~~~~~G~~~~~~~~~~pi~~~~g~~~g~v~~~~DITe~k~~e~ 274 (779)
T PRK11091 229 EQWLDYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQD 274 (779)
T ss_pred EEEEEcCCCCEEEEEEEeeeEEcCCCCEEEEEEEEeehhHHHHHHH
Confidence 8888899999999999999999999999999999999999988765
No 48
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=98.93 E-value=1.9e-09 Score=122.47 Aligned_cols=161 Identities=18% Similarity=0.230 Sum_probs=113.9
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC----cc
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG----IE 126 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 126 (625)
+.++++++++|. +|+|+++|+++++++||+++|++|++...+.+++ ........+......+ ..
T Consensus 19 e~~~~~i~~~d~---~g~i~~~N~~~~~l~G~s~eeliG~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 86 (799)
T PRK11359 19 EQNMMGAVLINE---NDEVLFFNPAAEKLWGYKREEVIGNNIDMLIPRD---------LRPAHPEYIRHNREGGKARVEG 86 (799)
T ss_pred HhhcCcEEEEcC---CCeEEEEcHHHHHHhCCCHHHHcCCCHHHhcCcc---------ccccchHHHhhhhccCCccccc
Confidence 348889999999 9999999999999999999999999887775422 2222222223333222 23
Q ss_pred eEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCcchhhhhhhhcccc---ccccccccCCCCCC
Q 048754 127 FQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQY---DQSAQYFSGGHSPL 203 (625)
Q Consensus 127 ~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 203 (625)
+..+.+.+++||..+|+.+...++. .+|. ..++++.+|||++++.++. ++.+...+ .....+++.+..++
T Consensus 87 ~~~e~~~~~~dG~~~~v~~~~~~~~-~~g~-~~~~~~~~DiT~~~~~~~~-----~~~~~~~~~~~~~~i~~~d~~g~i~ 159 (799)
T PRK11359 87 MSRELQLEKKDGSKIWTRFALSKVS-AEGK-VYYLALVRDASVEMAQKEQ-----TRQLIIAVDHLDRPVIVLDPERRIV 159 (799)
T ss_pred cceeeEEecCCcCEEEEEEEeeeec-cCCc-eEEEEEEeeccchhhhHHH-----HHHHHHHHhcCCCcEEEEcCCCcEE
Confidence 3447788899999999999988874 4455 4578899999988765441 11222222 22333447777788
Q ss_pred cccccccccccCc-hhHHHHhhhcccCc
Q 048754 204 SQHQDICGILQLS-DEVLAHNILSRLTP 230 (625)
Q Consensus 204 ~~n~~~~~~~g~~-~e~~~~~~~~~~~~ 230 (625)
++|+++++++|++ ++++|..+..++++
T Consensus 160 ~~N~~~~~l~G~~~~e~~g~~~~~~~~~ 187 (799)
T PRK11359 160 QCNRAFTEMFGYCISEASGMQPDTLLNI 187 (799)
T ss_pred EEChhhHhhhCCCHHHHCCCChHHhcCC
Confidence 9999999999999 88887777666553
No 49
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.89 E-value=4.9e-09 Score=71.58 Aligned_cols=47 Identities=47% Similarity=0.789 Sum_probs=40.9
Q ss_pred CCEEEEEccCC--CCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEE
Q 048754 368 GSWLVVFGGCG--RQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII 418 (625)
Q Consensus 368 ~~~iyv~GG~~--~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~ 418 (625)
++++|||||.. ....++++|+||+.++ +|+++.+. |.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~--~W~~~~~~--P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTN--TWTRIGDL--PPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCC--EEEECCCC--CCCccceEEEEC
Confidence 46899999998 5668999999999999 99999654 889999999763
No 50
>PRK13558 bacterio-opsin activator; Provisional
Probab=98.87 E-value=9.6e-09 Score=113.85 Aligned_cols=116 Identities=44% Similarity=0.712 Sum_probs=97.1
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGE 130 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 130 (625)
+.++.++++.|....+|.++++|+++++++||++++++|++...+.. +.........+...+..+.....+
T Consensus 155 ~~~~~gi~~~d~~~~dg~i~~~N~~~~~l~G~~~eel~g~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~e 225 (665)
T PRK13558 155 DEAPVGITIADATLPDEPLIYINDAFERITGYSPDEVLGRNCRFLQG---------EDTNEERVAELREAIDEERPTSVE 225 (665)
T ss_pred hcCCccEEEEcCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHHHhcC---------CCccHHHHHHHHHHHhcCCCeEEE
Confidence 34889999987433378999999999999999999999998766643 233445556666777777888889
Q ss_pred EEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.+.++++|..+|+.+...|+.+.+|.+.+++++.+|||++|+.|+
T Consensus 226 ~~~~~~dG~~~~~~~~~~pi~d~~G~~~~~vgi~~DITerk~~E~ 270 (665)
T PRK13558 226 LRNYRKDGSTFWNQVDIAPIRDEDGTVTHYVGFQTDVTERKEAEL 270 (665)
T ss_pred EEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeCcHHHHHHH
Confidence 999999999999999999999999999999999999999998765
No 51
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=98.86 E-value=1.5e-08 Score=80.33 Aligned_cols=90 Identities=31% Similarity=0.378 Sum_probs=69.7
Q ss_pred EEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHH-HHHhCcceEEEEEEEeecCcceeEEEEE
Q 048754 69 IIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRR-CLEEGIEFQGELLNFKKDGTPLVNRLRL 147 (625)
Q Consensus 69 i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~dG~~~~~~~~~ 147 (625)
|+++|+.+.+++||+++++ +....... .+..||++.+.....+.+ ....+..+..+++++++||+..|+....
T Consensus 1 ~i~~s~~~~~i~G~~~~~~-~~~~~~~~-----~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~~G~~~wi~~~~ 74 (91)
T PF08447_consen 1 IIYWSDNFYEIFGYSPEEI-GKPDFEEW-----LERIHPDDRERVRQAIQQAALQNGEPFEIEYRIRRKDGEYRWIEVRG 74 (91)
T ss_dssp -EEE-THHHHHHTS-HHHH-TCBEHHHH-----HHHB-TTTHHHHHHHHHHHHHHTT-EEEEEEEEEGTTSTEEEEEEEE
T ss_pred CEEEeHHHHHHhCCCHHHh-ccCCHHHH-----HhhcCHHHHHHHHHHHHHHhhccCcceEEEEEEECCCCCEEEEEEEE
Confidence 6899999999999999999 65421111 122578888888888888 6777889999999999999999999999
Q ss_pred EEeeCCCCCEEEEEEEE
Q 048754 148 APIRDDDGTVTHIIGIQ 164 (625)
Q Consensus 148 ~~~~d~~g~~~~~i~~~ 164 (625)
.++.|.+|.+..++|++
T Consensus 75 ~~~~d~~g~~~~~~Gv~ 91 (91)
T PF08447_consen 75 RPIFDENGKPIRIIGVI 91 (91)
T ss_dssp EEEETTTS-EEEEEEEE
T ss_pred EEEECCCCCEEEEEEEC
Confidence 99999999999999874
No 52
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.85 E-value=8.3e-09 Score=70.45 Aligned_cols=48 Identities=44% Similarity=0.816 Sum_probs=41.0
Q ss_pred CCEEEEEcCcC-CCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE
Q 048754 420 GSKLVVSGGCT-DAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY 471 (625)
Q Consensus 420 ~~~iyv~GG~~-~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 471 (625)
++++|||||.. .....++++|+||+.+.+ |+++.. .|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~--W~~~~~--~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNT--WTRIGD--LPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCE--EEECCC--CCCCccceEEEEC
Confidence 46899999998 467789999999997765 999954 8999999999874
No 53
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=98.80 E-value=8.7e-09 Score=117.19 Aligned_cols=135 Identities=13% Similarity=0.107 Sum_probs=104.8
Q ss_pred EecCCCCccccceeeecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCC
Q 048754 28 FEGGGGGGGDDTELSLKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHP 107 (625)
Q Consensus 28 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~ 107 (625)
..+.+.+++.+++++..+.++ +.++++++++|. +|+++++|+++++++||+.++++|+....+.. +|
T Consensus 122 ~~DiT~~~~~~~~~~~~~~~~--~~~~~~i~~~d~---~g~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~--------~~ 188 (799)
T PRK11359 122 VRDASVEMAQKEQTRQLIIAV--DHLDRPVIVLDP---ERRIVQCNRAFTEMFGYCISEASGMQPDTLLN--------IP 188 (799)
T ss_pred EeeccchhhhHHHHHHHHHHH--hcCCCcEEEEcC---CCcEEEEChhhHhhhCCCHHHHCCCChHHhcC--------CC
Confidence 455565555554444443334 448999999999 99999999999999999999999998776642 12
Q ss_pred CCChHHHHHHHHHHHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 108 LVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.........+...+..+..+..+.+..+++|...|+.+...|+.+.+|.+.+++++.+|||+++++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~v~d~~g~~~~~~~~~~DITerk~~e~ 256 (799)
T PRK11359 189 EFPADNRIRLQQLLWKTARDQDEFLLLTRTGEKIWIKASISPVYDVLAHLQNLVMTFSDITEERQIRQ 256 (799)
T ss_pred CCcHHHHHHHHHhhccCCCCcceeEEeCCCCCEEEEEeeeeeeecCCCceeEEEEEeehhhhHHHHHH
Confidence 33444455555666666677778888899999999999999999999999999999999999987655
No 54
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.78 E-value=7.6e-09 Score=70.85 Aligned_cols=46 Identities=30% Similarity=0.679 Sum_probs=30.7
Q ss_pred CccceeEEEEcCCEEEEEccCCCC-CccccEEEEECCCCCCEEEEcCCC
Q 048754 357 GRWGHTLSSLNGSWLVVFGGCGRQ-GLLNDVFVLDLDAKQPTWIEVSGG 404 (625)
Q Consensus 357 ~r~~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~t~~~~W~~~~~~ 404 (625)
||.+|+++.+.+++||||||.+.. ..++++|+||+.++ +|++++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~--~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETN--TWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTT--EEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCC--EEEECCCC
Confidence 699999999876799999999876 58999999999999 99999654
No 55
>PLN02772 guanylate kinase
Probab=98.77 E-value=4.9e-08 Score=95.86 Aligned_cols=89 Identities=15% Similarity=0.192 Sum_probs=75.2
Q ss_pred CCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCC-CCCCccceeEEEEcCCEEEEEccCCCC
Q 048754 302 VEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKS-SPPGRWGHTLSSLNGSWLVVFGGCGRQ 380 (625)
Q Consensus 302 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~iyv~GG~~~~ 380 (625)
-+.|+..++++.+++++||+||.+.....++.+|+||..+ .+|......+ .|.||.+|+++++++.+|+|+++.+..
T Consensus 21 ~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t--~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~ 98 (398)
T PLN02772 21 GVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKIT--NNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP 98 (398)
T ss_pred cCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCC--CcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC
Confidence 3447899999999999999999876555788999999988 7999876544 788999999999988999999986654
Q ss_pred CccccEEEEECCCC
Q 048754 381 GLLNDVFVLDLDAK 394 (625)
Q Consensus 381 ~~~~~~~~~d~~t~ 394 (625)
-.++|.+.++|.
T Consensus 99 --~~~~w~l~~~t~ 110 (398)
T PLN02772 99 --DDSIWFLEVDTP 110 (398)
T ss_pred --ccceEEEEcCCH
Confidence 378999998875
No 56
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.77 E-value=9.8e-09 Score=70.31 Aligned_cols=46 Identities=33% Similarity=0.668 Sum_probs=30.3
Q ss_pred CCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCC
Q 048754 409 PRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPT 456 (625)
Q Consensus 409 ~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~ 456 (625)
||.+|+++.+.++++|||||....+..++++|+||+++.+ |+++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~--W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNT--WTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTE--EEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCE--EEECCC
Confidence 6899999999667999999998877899999999987766 999954
No 57
>PF13854 Kelch_5: Kelch motif
Probab=98.71 E-value=2.4e-08 Score=65.34 Aligned_cols=40 Identities=33% Similarity=0.538 Sum_probs=36.0
Q ss_pred CCCCCcccceEEECCEEEEEcccCC-CCCCCCCeEEEeccC
Q 048754 302 VEPSRCNFSACAAGNRLVLFGGEGV-NMQPMDDTFVLNLDA 341 (625)
Q Consensus 302 ~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~~~~~~ 341 (625)
+|++|.+|++++++++|||+||... ....++|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4788999999999999999999983 677899999999875
No 58
>PRK10060 RNase II stability modulator; Provisional
Probab=98.71 E-value=2e-08 Score=110.31 Aligned_cols=114 Identities=16% Similarity=0.137 Sum_probs=87.2
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
++.++++|+++|. +|+|+++|+++++++||+.++++|++..+++. +|.+.......+...+..+..+..
T Consensus 117 ~~~~~~gI~i~D~---~g~I~~~N~a~~~l~Gy~~~eliG~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 185 (663)
T PRK10060 117 VSEANSVIVILDS---RGNIQRFNRLCEEYTGLKEHDVIGQSVFKLFM--------SRREAAASRRNIRGFFRSGNAYEV 185 (663)
T ss_pred HhhCCceEEEEeC---CCCEEEEcHHHHHHHCcCHHHHcCCCHHHHhC--------ChhhHHHHHHHHHHHHhcCCceEE
Confidence 3448999999999 99999999999999999999999998766642 122333344556666777888888
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCC-CEEEEEEEEEeeecccccCC
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDG-TVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g-~~~~~i~~~~Dit~~~~~e~ 175 (625)
|.+..+++|+.+|+.....+ .+..| ....++++.+|||++++.++
T Consensus 186 e~~~~~~~G~~~~~~~~~~~-~~~~g~~~~~~i~~~~DITe~k~~e~ 231 (663)
T PRK10060 186 ERWIKTRKGQRLFLFRNKFV-HSGSGKNEIFLICSGTDITEERRAQE 231 (663)
T ss_pred EEEEEeCCCCEEEEEeeeEE-EcCCCCceEEEEEEEEechHHHHHHH
Confidence 99999999988887655443 44444 34567889999999987654
No 59
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.67 E-value=3.2e-08 Score=67.10 Aligned_cols=45 Identities=31% Similarity=0.431 Sum_probs=39.6
Q ss_pred CccceeEEEEcCCEEEEEccCCC-CCccccEEEEECCCCCCEEEEcCCC
Q 048754 357 GRWGHTLSSLNGSWLVVFGGCGR-QGLLNDVFVLDLDAKQPTWIEVSGG 404 (625)
Q Consensus 357 ~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~t~~~~W~~~~~~ 404 (625)
||.+|+++++ +++|||+||... ...++++++||+.++ +|+.+++|
T Consensus 1 pR~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVV-GNKIYVIGGYDGNNQPTNSVEVYDPETN--TWEELPPM 46 (47)
T ss_dssp -BBSEEEEEE-TTEEEEEEEBESTSSBEEEEEEEETTTT--EEEEEEEE
T ss_pred CCccCEEEEE-CCEEEEEeeecccCceeeeEEEEeCCCC--EEEEcCCC
Confidence 5888999988 668999999987 778999999999999 99999865
No 60
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.66 E-value=1.1e-05 Score=73.77 Aligned_cols=162 Identities=19% Similarity=0.280 Sum_probs=102.3
Q ss_pred EEEEEcccCCCCCCCCCeEEEeccCCC-CceEEcc------cCCCCCCccceeEEEE---cCCEEEEEccCCC-------
Q 048754 317 RLVLFGGEGVNMQPMDDTFVLNLDAAN-PEWRRVS------VKSSPPGRWGHTLSSL---NGSWLVVFGGCGR------- 379 (625)
Q Consensus 317 ~lyv~GG~~~~~~~~~~~~~~~~~~~~-~~W~~~~------~~~~p~~r~~~~~~~~---~~~~iyv~GG~~~------- 379 (625)
..+|+||..++++.++.+|++.+.+.. ++=..+. ....|.+|++|++.++ .+.-+++|||.+-
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 578899999999999999999987653 2222221 1357999999999997 2335789999841
Q ss_pred -C------CccccEEEEECCCCCCEEE--EcCCCCCCCCCccceEEEEcCCEEEEEcCcCC-CCceeceEEEEecC----
Q 048754 380 -Q------GLLNDVFVLDLDAKQPTWI--EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTD-AGVLLSDTYLLDLT---- 445 (625)
Q Consensus 380 -~------~~~~~~~~~d~~t~~~~W~--~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~~---- 445 (625)
. .+...++.+|++-+ ..+ .++.. ..+..+|.+.+- ++.+|++||..- ++.....++.+.++
T Consensus 120 TenWNsVvDC~P~VfLiDleFG--C~tah~lpEl--~dG~SFHvslar-~D~VYilGGHsl~sd~Rpp~l~rlkVdLllG 194 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFG--CCTAHTLPEL--QDGQSFHVSLAR-NDCVYILGGHSLESDSRPPRLYRLKVDLLLG 194 (337)
T ss_pred hhhcceeccCCCeEEEEecccc--ccccccchhh--cCCeEEEEEEec-CceEEEEccEEccCCCCCCcEEEEEEeecCC
Confidence 1 13557899999877 444 34432 556778888777 559999999643 23344456665532
Q ss_pred CCCCceEEcCCCCCCCCCCcceE--EEECCcEEEEEcCCcCCCCc
Q 048754 446 TDKPMWREIPTSWSPPSRLGHSL--SVYGRTKVLMFGGLAKSGHL 488 (625)
Q Consensus 446 ~~~~~W~~~~~~~~p~~r~~~~~--~~~~~~~l~v~GG~~~~~~~ 488 (625)
+...+.+.+. .+..-.++ +..+....+|+||+..+...
T Consensus 195 SP~vsC~vl~-----~glSisSAIvt~~~~~e~iIlGGY~sdsQK 234 (337)
T PF03089_consen 195 SPAVSCTVLQ-----GGLSISSAIVTQTGPHEYIILGGYQSDSQK 234 (337)
T ss_pred CceeEEEECC-----CCceEeeeeEeecCCCceEEEeccccccee
Confidence 1111122222 12222222 22344589999999876654
No 61
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.63 E-value=1.1e-07 Score=64.82 Aligned_cols=45 Identities=36% Similarity=0.615 Sum_probs=38.9
Q ss_pred CccceeEEEEcCCEEEEEccC---CCCCccccEEEEECCCCCCEEEEcCCC
Q 048754 357 GRWGHTLSSLNGSWLVVFGGC---GRQGLLNDVFVLDLDAKQPTWIEVSGG 404 (625)
Q Consensus 357 ~r~~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~~d~~t~~~~W~~~~~~ 404 (625)
||.+|+++++ +++|||+||. ......+++++||+.++ +|+.++.+
T Consensus 1 ~r~~hs~~~~-~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~--~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVL-DGKIYVFGGYGTDNGGSSSNDVWVFDTETN--QWTELSPM 48 (49)
T ss_pred CccceEEEEE-CCEEEEECCcccCCCCcccceeEEEECCCC--EEeecCCC
Confidence 5889999988 6699999999 45557899999999999 99999764
No 62
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.63 E-value=8.3e-08 Score=65.47 Aligned_cols=44 Identities=23% Similarity=0.500 Sum_probs=39.2
Q ss_pred CCcccceEEECCEEEEEccc--CCCCCCCCCeEEEeccCCCCceEEcc
Q 048754 305 SRCNFSACAAGNRLVLFGGE--GVNMQPMDDTFVLNLDAANPEWRRVS 350 (625)
Q Consensus 305 ~r~~~~~~~~~~~lyv~GG~--~~~~~~~~~~~~~~~~~~~~~W~~~~ 350 (625)
||.+|++++++++|||+||+ .......+++++||+.+ .+|+.++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t--~~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTET--NQWTELS 46 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCC--CEEeecC
Confidence 58999999999999999999 45567789999999999 7999884
No 63
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.59 E-value=3.7e-08 Score=66.80 Aligned_cols=44 Identities=25% Similarity=0.508 Sum_probs=39.8
Q ss_pred CCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcc
Q 048754 305 SRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVS 350 (625)
Q Consensus 305 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~ 350 (625)
||.+|++++++++|||+||.......++++++||+.+ ++|+.+.
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPET--NTWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTT--TEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCC--CEEEEcC
Confidence 5899999999999999999988778899999999998 8999873
No 64
>PF13854 Kelch_5: Kelch motif
Probab=98.58 E-value=1.3e-07 Score=61.81 Aligned_cols=40 Identities=38% Similarity=0.590 Sum_probs=35.3
Q ss_pred CCCCCCcceEEEECCcEEEEEcCcCC-CCCccCceEEEEccC
Q 048754 579 PPKFAWGHSTCVVGGTRVLVLGGHTG-EEWVLNELHELCLAS 619 (625)
Q Consensus 579 ~p~~r~~~~~~~~~~~~i~i~GG~~~-~~~~~~d~~~~~~~~ 619 (625)
.|.+|.+|++++++ ++|||+||.+. +...++|+|+|++.+
T Consensus 1 ~P~~R~~hs~~~~~-~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVG-NNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEEC-CEEEEEcCccCCCCCEECcEEEEECCC
Confidence 47899999999997 59999999994 666899999999976
No 65
>TIGR00229 sensory_box PAS domain S-box. The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator.
Probab=98.52 E-value=4.8e-07 Score=74.30 Aligned_cols=111 Identities=29% Similarity=0.384 Sum_probs=82.0
Q ss_pred CCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC-cceEEE
Q 048754 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG-IEFQGE 130 (625)
Q Consensus 52 ~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e 130 (625)
.++++++++|. ++.++++|+++.+++|++.++++|.....+.. +.........+...+... .....+
T Consensus 11 ~~~~~~~~~d~---~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (124)
T TIGR00229 11 SSPDAIIVIDL---EGNILYVNPAFEEIFGYSAEELIGRNVLELIP---------EEDREEVRERIERLLEGEREPVSEE 78 (124)
T ss_pred hCCceEEEEcC---CCcEEEEchHHHHHhCCChHHhcCcchhhhcC---------hhhhHHHHHHHHHHHcCCCCCcceE
Confidence 37889999999 99999999999999999999999987766543 222233333344444422 223334
Q ss_pred EEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.....++|...|+.....++. .+|...+++++..|||++++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dit~~~~~~~ 122 (124)
T TIGR00229 79 RRVRRKDGSEIWVEVSVSPIR-TNGGELGVVGIVRDITERKQAEE 122 (124)
T ss_pred eeeEcCCCCEEEEEEEEeehh-hCCCeeEEEEEeeehhHHHHHHh
Confidence 444577899999999999988 77888899999999999876543
No 66
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=98.47 E-value=4.4e-06 Score=65.12 Aligned_cols=102 Identities=27% Similarity=0.386 Sum_probs=79.3
Q ss_pred CeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEEE
Q 048754 54 PTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLN 133 (625)
Q Consensus 54 ~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 133 (625)
+++++++|. ++.++++|+++.+++|++.++++|.....+.. +.........+......+.....+...
T Consensus 2 ~~~i~~~d~---~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (103)
T cd00130 2 PDGVIVLDL---DGRILYANPAAEQLLGYSPEELIGKSLLDLIH---------PEDREELRERLENLLSGGEPVTLEVRL 69 (103)
T ss_pred CceEEEECC---CCcEEEECHHHHHHhCCCHHHHcCccHHHhcC---------CccchHHHHHHHHHHhcCcCeEEEEEE
Confidence 568889999 99999999999999999999999987765543 223334444455555545556667777
Q ss_pred EeecCcceeEEEEEEEeeCCCCCEEEEEEEEEee
Q 048754 134 FKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFS 167 (625)
Q Consensus 134 ~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Di 167 (625)
...+|...|+.+...++.+..+...+++++.+||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di 103 (103)
T cd00130 70 RRKDGSVIWVLVSLTPIRDEGGEVIGLLGVVRDI 103 (103)
T ss_pred EccCCCEEEEEEEEEEEecCCCCEEEEEEEEecC
Confidence 7788999999999999988888888888888775
No 67
>smart00612 Kelch Kelch domain.
Probab=98.42 E-value=4.6e-07 Score=61.44 Aligned_cols=46 Identities=30% Similarity=0.484 Sum_probs=40.4
Q ss_pred EEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEc
Q 048754 370 WLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIE 419 (625)
Q Consensus 370 ~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~ 419 (625)
+||++||......++++++||+.++ +|+.++++ |.+|..|+++.++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~--~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETN--KWTPLPSM--PTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCC--eEccCCCC--CCccccceEEEeC
Confidence 4899999976667899999999999 99999987 8899999988774
No 68
>PF12860 PAS_7: PAS fold
Probab=98.28 E-value=3.6e-06 Score=69.91 Aligned_cols=113 Identities=18% Similarity=0.105 Sum_probs=72.2
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhh-cCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEV-LGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~-~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
++.++||++.|. +++++++|++|.++++++.+.+ .|.+..++...........+......................
T Consensus 2 d~l~~Gv~v~D~---~~rl~~~N~~~~~l~~~~~~~~~~G~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (115)
T PF12860_consen 2 DSLPQGVAVFDS---DGRLVFWNQRFRELFGLPPEMLRPGASFRDLLRRLAERGEFPPGDPEAWVRQRLARLRRRQPRSF 78 (115)
T ss_pred CCcCceEEEEcC---CCeEEeEcHHHHHHhCCCHHHhcCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 458999999999 9999999999999999999988 787766553100000000011222333333333333333333
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.....||. |+.+...|+.+ | +++.+.+|||++++.|+
T Consensus 79 --~~~~~dgr--~l~~~~~~~~~--G---g~v~~~~DVT~~~~~E~ 115 (115)
T PF12860_consen 79 --ELRLPDGR--WLEVRAQPLPD--G---GFVLTFTDVTERRRAEE 115 (115)
T ss_pred --EEECCCCE--EEEEEeEECCC--C---CEEEEEEeCCHHHHhcC
Confidence 33456776 66788888754 4 46788999999987653
No 69
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=98.27 E-value=4.5e-06 Score=68.17 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=66.7
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
.+.+++++|. +++|.+.|+++.++++..+.+ +|++...+.. .........+.+.+..++....+..
T Consensus 8 ~~~~i~~vD~---~~~I~~~n~~a~~~f~~~~~~-iGr~l~~~~~----------~~~~~~l~~~i~~~~~~~~~~~~~~ 73 (106)
T PF13596_consen 8 MPIGIIFVDR---NLRIRYFNPAAARLFNLSPSD-IGRPLFDIHP----------PLSYPNLKKIIEQVRSGKEEEFEIV 73 (106)
T ss_dssp SSSEEEEEET---TSBEEEE-SCGC-SS---GGG-TTSBCCCSS-----------HHHHHHHHHHHHHHHTTSBSEEEEE
T ss_pred CCCCEEEEcC---CCeEEEeChhHhhhcCCChHH-CCCCHHHcCC----------ccchHHHHHHHHHHHcCCCceEEEE
Confidence 7889999999 999999999999999987655 7999887742 2223344445555666665333333
Q ss_pred EEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 133 NFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
. ..+|. ++.+.+.|+.+.+|...|++.++.|||
T Consensus 74 ~-~~~~~--~~~~~~~P~~~~~g~~~G~v~~~~DIT 106 (106)
T PF13596_consen 74 I-PNGGR--WYLVRYRPYRDEDGEYAGAVITFQDIT 106 (106)
T ss_dssp E-EETTE--EEEEEEEEEE-TTS-EEEEEEEEEE-G
T ss_pred e-cCCCE--EEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 3 24554 668899999999999999999999997
No 70
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=98.22 E-value=2.4e-06 Score=86.85 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=81.5
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (625)
.+.+++. .+++++++|. +|+|+++|+++++++|++.++++|++..++... .......+...+..
T Consensus 9 ~~~il~~--~~~gi~~~d~---~~~i~~~N~a~~~~~g~~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~~ 72 (348)
T PRK11073 9 AGQILNS--LINSILLLDD---DLAIHYANPAAQQLLAQSSRKLFGTPLPELLSY-----------FSLNIELMRESLQA 72 (348)
T ss_pred HHHHHhc--CcCeEEEECC---CCeEeeEcHHHHHHhCCCHHHHcCCCHHHHcCc-----------chhhHHHHHHHHHc
Confidence 3455555 8999999999 999999999999999999999999998877531 11122334445555
Q ss_pred CcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 124 GIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 124 ~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+..+..+.....++|+.+|+.++..|+. . .+++...+|+|+++++++
T Consensus 73 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~---~~~~~~~~dit~~~~~~~ 119 (348)
T PRK11073 73 GQGFTDNEVTLVIDGRSHILSLTAQRLP--E---GMILLEMAPMDNQRRLSQ 119 (348)
T ss_pred CCcccccceEEEECCceEEEEEEEEEcc--C---ceeEEEEechhHHHHHHH
Confidence 5554444445567999999999999986 2 235667899998876644
No 71
>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A ....
Probab=98.19 E-value=4.4e-05 Score=62.41 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=75.9
Q ss_pred CCCEEEEehH-HHHHhCCCchhhcCCCCcccccCCcccccCCCCCChH-HHHHHHHHHHhCcceEEEEEEEeecCcceeE
Q 048754 66 DFPIIYVNKV-FEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPV-VVSEIRRCLEEGIEFQGELLNFKKDGTPLVN 143 (625)
Q Consensus 66 ~g~i~~~N~~-~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~ 143 (625)
+|.|+++... ...++||.++|++|++..++. ||++... ........+..|.....-+|++.++|...|+
T Consensus 11 dgki~~~d~~~v~~~lgy~~~eLvG~s~y~~~---------H~~D~~~~~~~~~~~~~~~g~~~~~~yR~~~k~g~~vwv 81 (111)
T PF14598_consen 11 DGKITYVDSRAVSSLLGYLPEELVGRSIYDFV---------HPDDLQRVLKQHHREVLQKGQSVSPYYRFRTKNGGYVWV 81 (111)
T ss_dssp TSBEEEEETTHHHHHHSS-HHHHTTSBGGGGB---------SCCTHHHHHHHHHHHHHHHSSEEEEEEEEE-TTSSEEEE
T ss_pred CcEEEEEcCccChhhcCCCcHHHcCCchHHhC---------CHhhhhhHHHHHHHHHhhCCCcCcceEEEEecCCcEEEE
Confidence 9999999999 699999999999999999885 5666665 5556777778888877789999999999999
Q ss_pred EEEEEEeeC-CCCCEEEEEEEEEeeecc
Q 048754 144 RLRLAPIRD-DDGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 144 ~~~~~~~~d-~~g~~~~~i~~~~Dit~~ 170 (625)
......+.+ ..+++..++++-+-+++.
T Consensus 82 qt~~~~~~n~~~~~~~~Iv~~n~vlse~ 109 (111)
T PF14598_consen 82 QTKATLFYNPWTSKPEFIVCTNTVLSEE 109 (111)
T ss_dssp EEEEEEEEETTTTCEEEEEEEEEEESCE
T ss_pred EEEEEEEECCCCCCccEEEEEEEEeccC
Confidence 999888875 345666777766666654
No 72
>smart00612 Kelch Kelch domain.
Probab=98.18 E-value=3.9e-06 Score=56.78 Aligned_cols=46 Identities=35% Similarity=0.655 Sum_probs=38.3
Q ss_pred EEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC
Q 048754 422 KLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG 472 (625)
Q Consensus 422 ~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 472 (625)
+|||+||... ...++++++||+.+++ |+.+++ +|.+|..|++++++
T Consensus 1 ~iyv~GG~~~-~~~~~~v~~yd~~~~~--W~~~~~--~~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDG-GQRLKSVEVYDPETNK--WTPLPS--MPTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCCC-CceeeeEEEECCCCCe--EccCCC--CCCccccceEEEeC
Confidence 4899999864 4568899999987766 999886 88999999988775
No 73
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.14 E-value=0.00012 Score=68.05 Aligned_cols=154 Identities=16% Similarity=0.200 Sum_probs=94.2
Q ss_pred cEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC--CCCceEEcCCCCCCCC
Q 048754 385 DVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT--DKPMWREIPTSWSPPS 462 (625)
Q Consensus 385 ~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~--~~~~W~~~~~~~~p~~ 462 (625)
....||+.|+ +++.+... .--+..+.+.+.++++++.||...+. ..+..|++.+ .+..|.+.... +..+
T Consensus 47 ~s~~yD~~tn--~~rpl~v~---td~FCSgg~~L~dG~ll~tGG~~~G~---~~ir~~~p~~~~~~~~w~e~~~~-m~~~ 117 (243)
T PF07250_consen 47 HSVEYDPNTN--TFRPLTVQ---TDTFCSGGAFLPDGRLLQTGGDNDGN---KAIRIFTPCTSDGTCDWTESPND-MQSG 117 (243)
T ss_pred EEEEEecCCC--cEEeccCC---CCCcccCcCCCCCCCEEEeCCCCccc---cceEEEecCCCCCCCCceECccc-ccCC
Confidence 3557999999 88887642 22232333445567899999976533 4567788743 23459887643 7889
Q ss_pred CCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC---CCCceeEeeeccccCcCCCCCCCCCCccceEEEEecC
Q 048754 463 RLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD---EEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPC 539 (625)
Q Consensus 463 r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~---~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~ 539 (625)
|+..+++.+.+++++|+||.... ....+.... ....|..+.... .....-.+..+....+
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~~--------t~E~~P~~~~~~~~~~~~~l~~~~---------~~~~~nlYP~~~llPd 180 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNNP--------TYEFWPPKGPGPGPVTLPFLSQTS---------DTLPNNLYPFVHLLPD 180 (243)
T ss_pred CccccceECCCCCEEEEeCcCCC--------cccccCCccCCCCceeeecchhhh---------ccCccccCceEEEcCC
Confidence 99999999999999999998621 111222110 011222222110 0011224456667779
Q ss_pred CEEEEEecCCCCCCCCCcEEEEeCCCCCCCe-EEEc
Q 048754 540 GRIIIFGGSIAGLHSPSQLFLLDPSEEKPSW-RILN 574 (625)
Q Consensus 540 ~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W-~~v~ 574 (625)
++|++++.. +-++||. .++++ ..++
T Consensus 181 G~lFi~an~--------~s~i~d~--~~n~v~~~lP 206 (243)
T PF07250_consen 181 GNLFIFANR--------GSIIYDY--KTNTVVRTLP 206 (243)
T ss_pred CCEEEEEcC--------CcEEEeC--CCCeEEeeCC
Confidence 999999763 4567888 56665 4443
No 74
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.09 E-value=0.0029 Score=65.31 Aligned_cols=180 Identities=12% Similarity=0.132 Sum_probs=102.4
Q ss_pred CeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCC------CCCccceeEE
Q 048754 291 VCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSS------PPGRWGHTLS 364 (625)
Q Consensus 291 ~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~------p~~r~~~~~~ 364 (625)
..|+... ....+......+.++.++.||+.+.. ..++++|..+-+..|+.-..... +.++...+ .
T Consensus 46 ~~W~~~~-g~g~~~~~~~~sPvv~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~ 116 (394)
T PRK11138 46 TVWSTSV-GDGVGDYYSRLHPAVAYNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGG-V 116 (394)
T ss_pred eeeEEEc-CCCCccceeeeccEEECCEEEEECCC-------CeEEEEECCCCcEeeEEcCCCcccccccccccccccc-c
Confidence 4677543 22222212223556789999998753 24899998876678985321100 01122222 3
Q ss_pred EEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEec
Q 048754 365 SLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDL 444 (625)
Q Consensus 365 ~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~ 444 (625)
++.++++|+.+. ...++.+|..|++..|+.-... + . .+...+.++.+|+..+ ...++.||+
T Consensus 117 ~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~--~---~-~ssP~v~~~~v~v~~~-------~g~l~ald~ 177 (394)
T PRK11138 117 TVAGGKVYIGSE------KGQVYALNAEDGEVAWQTKVAG--E---A-LSRPVVSDGLVLVHTS-------NGMLQALNE 177 (394)
T ss_pred EEECCEEEEEcC------CCEEEEEECCCCCCcccccCCC--c---e-ecCCEEECCEEEEECC-------CCEEEEEEc
Confidence 344677887543 1369999999998899854322 1 1 1222333667777433 136899999
Q ss_pred CCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeE
Q 048754 445 TTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQ 509 (625)
Q Consensus 445 ~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~ 509 (625)
++.+..|+.-........+...+.++.++ .+|+..+ ...++.+|+++....|+.
T Consensus 178 ~tG~~~W~~~~~~~~~~~~~~~sP~v~~~-~v~~~~~----------~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 178 SDGAVKWTVNLDVPSLTLRGESAPATAFG-GAIVGGD----------NGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred cCCCEeeeecCCCCcccccCCCCCEEECC-EEEEEcC----------CCEEEEEEccCChhhhee
Confidence 99998998754211111122233344444 6666433 256788898876678874
No 75
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=98.05 E-value=4.3e-06 Score=84.23 Aligned_cols=104 Identities=20% Similarity=0.149 Sum_probs=76.0
Q ss_pred ccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC
Q 048754 45 PGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG 124 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (625)
+.+++. .+++++++|. +|+++++|+++++++|+++++++|++...+.. .+. +.+.+..+
T Consensus 9 ~~~~~~--~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~------------~~~----~~~~l~~~ 67 (333)
T TIGR02966 9 RAAAQA--LPDAVVVLDE---EGQIEWCNPAAERLLGLRWPDDLGQRITNLIR------------HPE----FVEYLAAG 67 (333)
T ss_pred HHHHHh--CcCcEEEECC---CCcEEEEcHHHHHHhCCChHHHcCCcHHHHcc------------CHH----HHHHHHhc
Confidence 344445 9999999999 99999999999999999999999988776642 122 22223222
Q ss_pred cceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 125 IEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 125 ~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.. ........++|...|+.+...|+.+.+ ++++.+|||+++++++
T Consensus 68 ~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~dit~~~~~~~ 112 (333)
T TIGR02966 68 RF-SEPLELPSPINSERVLEIRIAPYGEEQ-----KLLVARDVTRLRRLEQ 112 (333)
T ss_pred cc-CCCeEeecCCCCceEEEEEEEEcCCCc-----eEEEEeCchHHHHHHH
Confidence 22 223444557888889999999987543 6788899998876544
No 76
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=97.99 E-value=2.4e-05 Score=86.03 Aligned_cols=110 Identities=18% Similarity=0.167 Sum_probs=86.2
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcce-EE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEF-QG 129 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 129 (625)
+..+++++++|. +|+++++|+++++++|+++++++|++...++.+ .......+.+.+..+... ..
T Consensus 269 ~~~~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 334 (607)
T PRK11360 269 ESIADGVIAIDR---QGKITTMNPAAEVITGLQRHELVGKPYSELFPP-----------NTPFASPLLDTLEHGTEHVDL 334 (607)
T ss_pred HhccCeEEEEcC---CCCEEEECHHHHHHhCCChHHhcCCcHHHHcCC-----------chhHHHHHHHHHhcCCCccce
Confidence 348899999999 999999999999999999999999988777531 122233444445444333 33
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+....+++|... +.+...|+.+.+|.+.+++++.+|||+++++++
T Consensus 335 ~~~~~~~~~~~~-~~~~~~~i~~~~g~~~~~i~~~~Dite~~~~e~ 379 (607)
T PRK11360 335 EISFPGRDRTIE-LSVSTSLLHNTHGEMIGALVIFSDLTERKRLQR 379 (607)
T ss_pred EEEEEcCCCcEE-EEEEEeeEEcCCCCEEEEEEEEeechHHHHHHH
Confidence 556667777766 889999999999999999999999999988765
No 77
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.99 E-value=1.8e-05 Score=79.21 Aligned_cols=100 Identities=29% Similarity=0.418 Sum_probs=84.9
Q ss_pred CCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEEEEeecCcceeEEE
Q 048754 66 DFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRL 145 (625)
Q Consensus 66 ~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~ 145 (625)
+--|+|+|+.|+++.||.+.|++.++..--++- -+..+....+.+++.++..+.-+.|..++.|+.++.|+.+
T Consensus 39 D~PiVY~NdgFcKlsGY~RAevMQKs~tc~FMy-------GEltdk~ti~k~~~t~eN~~~~qfEillyKKN~TPvW~~v 111 (971)
T KOG0501|consen 39 DWPIVYCNDGFCKLSGYHRAEVMQKSCTCSFMY-------GELTDKGTIEKVRQTLENYETNQFEILLYKKNRTPVWLLV 111 (971)
T ss_pred ccceEEecCcchhccCccHHHHhcccceeeeee-------ccccchhhHHHHHHHHHhhhhcceeeEeeecCCCceEEEE
Confidence 446899999999999999999999886433321 1234556778888888888888889999999999999999
Q ss_pred EEEEeeCCCCCEEEEEEEEEeeecccc
Q 048754 146 RLAPIRDDDGTVTHIIGIQIFSEAKID 172 (625)
Q Consensus 146 ~~~~~~d~~g~~~~~i~~~~Dit~~~~ 172 (625)
.+.|++++...++.++++++|||..|+
T Consensus 112 qiAPIrNe~d~VVLfLctFkDIT~~KQ 138 (971)
T KOG0501|consen 112 QIAPIRNEKDKVVLFLCTFKDITALKQ 138 (971)
T ss_pred EeecccCCCceEEEEEeecccchhhcC
Confidence 999999999999999999999998876
No 78
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.94 E-value=0.0062 Score=62.85 Aligned_cols=202 Identities=14% Similarity=0.199 Sum_probs=117.5
Q ss_pred cccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccE
Q 048754 307 CNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDV 386 (625)
Q Consensus 307 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 386 (625)
...+.++.++.||+.+.. ..++++|..+-+..|+.-. .. + . .+..++.++.+|+..+. +.+
T Consensus 112 ~~~~~~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~-~~---~-~-~ssP~v~~~~v~v~~~~------g~l 172 (394)
T PRK11138 112 LSGGVTVAGGKVYIGSEK-------GQVYALNAEDGEVAWQTKV-AG---E-A-LSRPVVSDGLVLVHTSN------GML 172 (394)
T ss_pred cccccEEECCEEEEEcCC-------CEEEEEECCCCCCcccccC-CC---c-e-ecCCEEECCEEEEECCC------CEE
Confidence 334456778899875431 2389999987778898531 11 1 1 22223446677775442 359
Q ss_pred EEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCC----
Q 048754 387 FVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPS---- 462 (625)
Q Consensus 387 ~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~---- 462 (625)
+.+|..+++..|+.-...+....+...+-+.. ++.+|+..+ . ..++.+|+.+....|+.-.. .|..
T Consensus 173 ~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~---~----g~v~a~d~~~G~~~W~~~~~--~~~~~~~~ 242 (394)
T PRK11138 173 QALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGD---N----GRVSAVLMEQGQLIWQQRIS--QPTGATEI 242 (394)
T ss_pred EEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcC---C----CEEEEEEccCChhhheeccc--cCCCccch
Confidence 99999999888986543211111222233333 556666432 1 35788899888888975321 1110
Q ss_pred -C---CcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEec
Q 048754 463 -R---LGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMP 538 (625)
Q Consensus 463 -r---~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~ 538 (625)
+ ...+.++.++ .+|+.+. ...++.+|+.+....|+.-.. .+ ...+..
T Consensus 243 ~~~~~~~~sP~v~~~-~vy~~~~----------~g~l~ald~~tG~~~W~~~~~--------------~~---~~~~~~- 293 (394)
T PRK11138 243 DRLVDVDTTPVVVGG-VVYALAY----------NGNLVALDLRSGQIVWKREYG--------------SV---NDFAVD- 293 (394)
T ss_pred hcccccCCCcEEECC-EEEEEEc----------CCeEEEEECCCCCEEEeecCC--------------Cc---cCcEEE-
Confidence 1 1123444444 8887642 257889999876667875311 11 112333
Q ss_pred CCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEE
Q 048754 539 CGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRIL 573 (625)
Q Consensus 539 ~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v 573 (625)
+++||+... ...++.+|+++.+..|+.-
T Consensus 294 ~~~vy~~~~-------~g~l~ald~~tG~~~W~~~ 321 (394)
T PRK11138 294 GGRIYLVDQ-------NDRVYALDTRGGVELWSQS 321 (394)
T ss_pred CCEEEEEcC-------CCeEEEEECCCCcEEEccc
Confidence 788888743 3579999996556678653
No 79
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.85 E-value=0.014 Score=59.88 Aligned_cols=158 Identities=18% Similarity=0.269 Sum_probs=92.3
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEE
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFV 388 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 388 (625)
.+.++.++.+|+.+.. ..++++|..+-+..|+.-. .. +.. +..++.++.+|+.+. + ..++.
T Consensus 59 ~~p~v~~~~v~v~~~~-------g~v~a~d~~tG~~~W~~~~-~~----~~~-~~p~v~~~~v~v~~~-~-----g~l~a 119 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD-------GTVVALDAETGKRLWRVDL-DE----RLS-GGVGADGGLVFVGTE-K-----GEVIA 119 (377)
T ss_pred cceEEECCEEEEECCC-------CeEEEEEccCCcEeeeecC-CC----Ccc-cceEEcCCEEEEEcC-C-----CEEEE
Confidence 4556778888887643 2389999877667897431 11 111 123344667776543 1 36999
Q ss_pred EECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceE
Q 048754 389 LDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSL 468 (625)
Q Consensus 389 ~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~ 468 (625)
+|..+++..|+.-... . ...+. .+.++.+|+..+ ...++.+|+++....|+.-........+...+.
T Consensus 120 ld~~tG~~~W~~~~~~----~-~~~~p-~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp 186 (377)
T TIGR03300 120 LDAEDGKELWRAKLSS----E-VLSPP-LVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASP 186 (377)
T ss_pred EECCCCcEeeeeccCc----e-eecCC-EEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCC
Confidence 9999998889855332 1 11222 334567777433 136899999888888986442111111222334
Q ss_pred EEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeE
Q 048754 469 SVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQ 509 (625)
Q Consensus 469 ~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~ 509 (625)
++.++ .+| +|.. ...++.+|+.+....|+.
T Consensus 187 ~~~~~-~v~-~~~~---------~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 187 VIADG-GVL-VGFA---------GGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred EEECC-EEE-EECC---------CCEEEEEEccCCCEeeee
Confidence 44443 554 3332 257888998876667864
No 80
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.80 E-value=0.00034 Score=65.11 Aligned_cols=139 Identities=14% Similarity=0.199 Sum_probs=86.3
Q ss_pred eEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC--CCCceeEeeeccc
Q 048754 438 DTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD--EEPQWKQLECNAF 515 (625)
Q Consensus 438 ~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~--~~~~W~~~~~~~~ 515 (625)
.-.+||+.+++ ++.+.. ...-+..+.+...++++++.||... + ...+..|++.. .+..|.+....
T Consensus 47 ~s~~yD~~tn~--~rpl~v---~td~FCSgg~~L~dG~ll~tGG~~~-G-----~~~ir~~~p~~~~~~~~w~e~~~~-- 113 (243)
T PF07250_consen 47 HSVEYDPNTNT--FRPLTV---QTDTFCSGGAFLPDGRLLQTGGDND-G-----NKAIRIFTPCTSDGTCDWTESPND-- 113 (243)
T ss_pred EEEEEecCCCc--EEeccC---CCCCcccCcCCCCCCCEEEeCCCCc-c-----ccceEEEecCCCCCCCCceECccc--
Confidence 34668988876 887764 2333333444566779999999865 2 25666777652 23478877542
Q ss_pred cCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCC-C---CCCCeEEEcCCCCCCCCCCcceEEEE
Q 048754 516 TGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPS-E---EKPSWRILNVPGQPPKFAWGHSTCVV 591 (625)
Q Consensus 516 ~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~-~---~~~~W~~v~~~~~~p~~r~~~~~~~~ 591 (625)
+..+|.+.++..+.+++++|+||... ..+.|-+. . ....|..+.........-.+.-+.++
T Consensus 114 ---------m~~~RWYpT~~~L~DG~vlIvGG~~~------~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~ll 178 (243)
T PF07250_consen 114 ---------MQSGRWYPTATTLPDGRVLIVGGSNN------PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLL 178 (243)
T ss_pred ---------ccCCCccccceECCCCCEEEEeCcCC------CcccccCCccCCCCceeeecchhhhccCccccCceEEEc
Confidence 47899999999999999999999862 22233331 0 11122222211111123345667788
Q ss_pred CCcEEEEEcCcCC
Q 048754 592 GGTRVLVLGGHTG 604 (625)
Q Consensus 592 ~~~~i~i~GG~~~ 604 (625)
.+++|++++...+
T Consensus 179 PdG~lFi~an~~s 191 (243)
T PF07250_consen 179 PDGNLFIFANRGS 191 (243)
T ss_pred CCCCEEEEEcCCc
Confidence 8899999998543
No 81
>KOG1229 consensus 3'5'-cyclic nucleotide phosphodiesterases [Signal transduction mechanisms]
Probab=97.75 E-value=9.3e-06 Score=78.28 Aligned_cols=103 Identities=24% Similarity=0.430 Sum_probs=87.6
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
.+...++|-++|. +-.|.|+|++|++|+|+-+.|++|+...++...+ .........+..+++.|..+++
T Consensus 163 LD~c~eAiEI~~d---dhViQYVNpAfE~mmG~hkgEliGke~adlpkkd--------knradlldtintcikkgke~qG 231 (775)
T KOG1229|consen 163 LDECDEAIEICDD---DHVIQYVNPAFENMMGCHKGELIGKEEADLPKKD--------KNRADLLDTINTCIKKGKEAQG 231 (775)
T ss_pred Hhhhhhhheeccc---hhHHHHhcHHHHhhhcchhhhhcCCchhhccccc--------cchhhhhhhhhHhhhcCccccc
Confidence 5557788888988 8899999999999999999999999988886533 2345567788889999999999
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEE
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~ 163 (625)
+...++|.|..+.-.+.++|+....|.+..++.+
T Consensus 232 ~~~aRRksgdS~dqh~~itP~~gqggkirhfvsl 265 (775)
T KOG1229|consen 232 EEEARRKSGDSCDQHFIITPFAGQGGKIRHFVSL 265 (775)
T ss_pred hHHHhhccCCcccceEEEeeecCCCCceeeehhh
Confidence 9888999998888888899999888998888753
No 82
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.75 E-value=0.017 Score=54.49 Aligned_cols=198 Identities=14% Similarity=0.174 Sum_probs=105.2
Q ss_pred CeEEEeccCCCCceEEcccCCCCCC-ccce-eEEEE---cCC-EEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCC
Q 048754 333 DTFVLNLDAANPEWRRVSVKSSPPG-RWGH-TLSSL---NGS-WLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAP 406 (625)
Q Consensus 333 ~~~~~~~~~~~~~W~~~~~~~~p~~-r~~~-~~~~~---~~~-~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~ 406 (625)
.++++|+.+ .+|..++.+..+.. ...+ .+..+ .+. ||+.+...........+.+|+..++ +|+.+....
T Consensus 15 ~~~V~NP~T--~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~--~Wr~~~~~~- 89 (230)
T TIGR01640 15 RLVVWNPST--GQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSN--SWRTIECSP- 89 (230)
T ss_pred cEEEECCCC--CCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCC--CccccccCC-
Confidence 489999988 79998843222111 1111 11111 122 4555544321223357899999999 999887432
Q ss_pred CCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEE-cCCCCCCCCC----CcceEEEECCcEEEEEcC
Q 048754 407 PLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWRE-IPTSWSPPSR----LGHSLSVYGRTKVLMFGG 481 (625)
Q Consensus 407 p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~-~~~~~~p~~r----~~~~~~~~~~~~l~v~GG 481 (625)
+.......++.+ ++.+|-+.-..... ....+..||+.+++ |.. ++. |... .....+.+++ +|.++..
T Consensus 90 ~~~~~~~~~v~~-~G~lyw~~~~~~~~-~~~~IvsFDl~~E~--f~~~i~~---P~~~~~~~~~~~L~~~~G-~L~~v~~ 161 (230)
T TIGR01640 90 PHHPLKSRGVCI-NGVLYYLAYTLKTN-PDYFIVSFDVSSER--FKEFIPL---PCGNSDSVDYLSLINYKG-KLAVLKQ 161 (230)
T ss_pred CCccccCCeEEE-CCEEEEEEEECCCC-CcEEEEEEEcccce--Eeeeeec---CccccccccceEEEEECC-EEEEEEe
Confidence 222222225566 44677765322211 11268999998877 884 553 3222 1234555654 8877654
Q ss_pred CcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCcc---ceEEEEecCCEEEEEecCCCCCCCCC-c
Q 048754 482 LAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRL---DHVAVSMPCGRIIIFGGSIAGLHSPS-Q 557 (625)
Q Consensus 482 ~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~---~~~~~~~~~~~l~v~GG~~~~~~~~~-~ 557 (625)
..... .-++|+++-. +...|+++-..+. .+.+.. ........+++|++..+. ... -
T Consensus 162 ~~~~~-----~~~IWvl~d~-~~~~W~k~~~i~~---------~~~~~~~~~~~~~~~~~~g~I~~~~~~-----~~~~~ 221 (230)
T TIGR01640 162 KKDTN-----NFDLWVLNDA-GKQEWSKLFTVPI---------PPLPDLVDDNFLSGFTDKGEIVLCCED-----ENPFY 221 (230)
T ss_pred cCCCC-----cEEEEEECCC-CCCceeEEEEEcC---------cchhhhhhheeEeEEeeCCEEEEEeCC-----CCceE
Confidence 32211 1478888522 2456998766521 111111 123444547888887652 122 3
Q ss_pred EEEEeC
Q 048754 558 LFLLDP 563 (625)
Q Consensus 558 v~~~d~ 563 (625)
+..||+
T Consensus 222 ~~~y~~ 227 (230)
T TIGR01640 222 IFYYNV 227 (230)
T ss_pred EEEEec
Confidence 888988
No 83
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.68 E-value=4.5e-05 Score=72.08 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=85.9
Q ss_pred eeeecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHH
Q 048754 40 ELSLKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRR 119 (625)
Q Consensus 40 ~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 119 (625)
|.+....++.. ..+|++.+|. .|.|+-+|..+.+++|.+.++++|++..++..-. .. -.+.+
T Consensus 109 Er~kL~Svlay--MtDGViATdR---rG~iI~iN~~A~k~L~~~~E~~~~~~i~elL~i~----------d~---y~~~d 170 (459)
T COG5002 109 ERRKLDSVLAY--MTDGVIATDR---RGKIILINKPALKMLGVSKEDALGRSILELLKIE----------DT---YTFED 170 (459)
T ss_pred HHHHHHHHHHH--HcCceEeecC---CCcEEEeccHHHHHhCcCHHHHhcccHHHHhCCc----------cc---eeHHH
Confidence 33444556666 8899999999 9999999999999999999999999877664311 11 12344
Q ss_pred HHHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 120 CLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 120 ~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.++...++..+.. .+++...+.+....++-+.|-+-|++.+..|+|++.+.|+
T Consensus 171 L~e~~~s~lld~~---~~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~e~ 223 (459)
T COG5002 171 LVEKNDSLLLDSS---DEEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKVER 223 (459)
T ss_pred HHhcCCcEEEeec---CCCccEEEEEEEEEEeecccccceeEEEEecccHHHHHHH
Confidence 4555544444332 2677777888888888899999999999999999975543
No 84
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.59 E-value=0.05 Score=51.58 Aligned_cols=198 Identities=21% Similarity=0.315 Sum_probs=115.5
Q ss_pred eEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEE
Q 048754 311 ACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLD 390 (625)
Q Consensus 311 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d 390 (625)
.+..++.+|+..+ ...++++|..+-+..|+.-. +. +..... .+.++.+|+..+. +.++.+|
T Consensus 32 ~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~----~~-~~~~~~-~~~~~~v~v~~~~------~~l~~~d 92 (238)
T PF13360_consen 32 AVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDL----PG-PISGAP-VVDGGRVYVGTSD------GSLYALD 92 (238)
T ss_dssp EEEETTEEEEEET-------TSEEEEEETTTSEEEEEEEC----SS-CGGSGE-EEETTEEEEEETT------SEEEEEE
T ss_pred EEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeec----cc-ccccee-eecccccccccce------eeeEecc
Confidence 3447899999843 23499999877656788542 11 111122 3446788887631 2699999
Q ss_pred CCCCCCEEE-EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCC-----
Q 048754 391 LDAKQPTWI-EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRL----- 464 (625)
Q Consensus 391 ~~t~~~~W~-~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~----- 464 (625)
..+++..|+ ..... ++..........+.++.+|+... ...++.+|+++....|+.-.. .+....
T Consensus 93 ~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~~ 162 (238)
T PF13360_consen 93 AKTGKVLWSIYLTSS-PPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVG--EPRGSSPISSF 162 (238)
T ss_dssp TTTSCEEEEEEE-SS-CTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESS--TT-SS--EEEE
T ss_pred cCCcceeeeeccccc-cccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecC--CCCCCcceeee
Confidence 999988999 45432 22222223334444666776543 247899999998888987442 221111
Q ss_pred --cceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEE
Q 048754 465 --GHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542 (625)
Q Consensus 465 --~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 542 (625)
..+..++.++.+|+..+. ..+..+|..+....|+.. .. .........++.|
T Consensus 163 ~~~~~~~~~~~~~v~~~~~~----------g~~~~~d~~tg~~~w~~~-~~----------------~~~~~~~~~~~~l 215 (238)
T PF13360_consen 163 SDINGSPVISDGRVYVSSGD----------GRVVAVDLATGEKLWSKP-IS----------------GIYSLPSVDGGTL 215 (238)
T ss_dssp TTEEEEEECCTTEEEEECCT----------SSEEEEETTTTEEEEEEC-SS-----------------ECECEECCCTEE
T ss_pred cccccceEEECCEEEEEcCC----------CeEEEEECCCCCEEEEec-CC----------------CccCCceeeCCEE
Confidence 113334444488887553 235667888654357332 11 1112234447777
Q ss_pred EEEecCCCCCCCCCcEEEEeCCCCCCCeE
Q 048754 543 IIFGGSIAGLHSPSQLFLLDPSEEKPSWR 571 (625)
Q Consensus 543 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~ 571 (625)
|+.. . ...++++|+.+.+..|+
T Consensus 216 ~~~~-~------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 216 YVTS-S------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEE-T------TTEEEEEETTTTEEEEE
T ss_pred EEEe-C------CCEEEEEECCCCCEEeE
Confidence 7765 2 46899999965666675
No 85
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.48 E-value=0.047 Score=56.02 Aligned_cols=198 Identities=18% Similarity=0.224 Sum_probs=110.3
Q ss_pred eEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEE
Q 048754 311 ACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLD 390 (625)
Q Consensus 311 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d 390 (625)
.++.++.+|+.+.. ..++++|..+-+..|+.-. .. . . .+...+.++++|+..+ ...++.+|
T Consensus 101 p~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~-~~---~-~-~~~p~v~~~~v~v~~~------~g~l~a~d 161 (377)
T TIGR03300 101 VGADGGLVFVGTEK-------GEVIALDAEDGKELWRAKL-SS---E-V-LSPPLVANGLVVVRTN------DGRLTALD 161 (377)
T ss_pred eEEcCCEEEEEcCC-------CEEEEEECCCCcEeeeecc-Cc---e-e-ecCCEEECCEEEEECC------CCeEEEEE
Confidence 44557777765432 2389999877667897531 11 1 1 1222334667777543 13589999
Q ss_pred CCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCC-----C--
Q 048754 391 LDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPS-----R-- 463 (625)
Q Consensus 391 ~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~-----r-- 463 (625)
+.+++..|+.-........+...+.+.. ++.+|+ |.. + ..++.+|+.+.+..|+.-.. .+.. +
T Consensus 162 ~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~-~~~--~----g~v~ald~~tG~~~W~~~~~--~~~g~~~~~~~~ 231 (377)
T TIGR03300 162 AATGERLWTYSRVTPALTLRGSASPVIA-DGGVLV-GFA--G----GKLVALDLQTGQPLWEQRVA--LPKGRTELERLV 231 (377)
T ss_pred cCCCceeeEEccCCCceeecCCCCCEEE-CCEEEE-ECC--C----CEEEEEEccCCCEeeeeccc--cCCCCCchhhhh
Confidence 9998888985443211111222233344 445544 431 1 26888999888888975321 1111 1
Q ss_pred -CcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEE
Q 048754 464 -LGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542 (625)
Q Consensus 464 -~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 542 (625)
...+.++. ++.+|+... ...++.||+++....|..-. +. ..+.+ +.+++|
T Consensus 232 ~~~~~p~~~-~~~vy~~~~----------~g~l~a~d~~tG~~~W~~~~--------------~~---~~~p~-~~~~~v 282 (377)
T TIGR03300 232 DVDGDPVVD-GGQVYAVSY----------QGRVAALDLRSGRVLWKRDA--------------SS---YQGPA-VDDNRL 282 (377)
T ss_pred ccCCccEEE-CCEEEEEEc----------CCEEEEEECCCCcEEEeecc--------------CC---ccCce-EeCCEE
Confidence 11223333 447777532 25788999987666786531 00 11122 337888
Q ss_pred EEEecCCCCCCCCCcEEEEeCCCCCCCeEEE
Q 048754 543 IIFGGSIAGLHSPSQLFLLDPSEEKPSWRIL 573 (625)
Q Consensus 543 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v 573 (625)
|+... ...++++|.++.+..|+.-
T Consensus 283 yv~~~-------~G~l~~~d~~tG~~~W~~~ 306 (377)
T TIGR03300 283 YVTDA-------DGVVVALDRRSGSELWKND 306 (377)
T ss_pred EEECC-------CCeEEEEECCCCcEEEccc
Confidence 87632 3579999986556678753
No 86
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=97.29 E-value=2.4e-05 Score=83.61 Aligned_cols=133 Identities=9% Similarity=-0.049 Sum_probs=79.1
Q ss_pred EEecCCCCccccceeeeccccc--ccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCccccc
Q 048754 27 SFEGGGGGGGDDTELSLKPGLL--FYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQR 104 (625)
Q Consensus 27 ~~~~~~~~~~~e~~~~~~~~~~--~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~ 104 (625)
...+.+++++.+++++..+..+ .+++++++++++|. +|+++++|+++++++|+...+..+.....+..
T Consensus 111 ~~~DIt~~k~~e~~l~~~~~~~~~~~~~~~~~i~~~d~---~~~i~~~N~~~~~~~g~~~~~~~~~~~~~~~~------- 180 (494)
T TIGR02938 111 MHRDITELHRLEQVVANQKLLIESVVDAAPVAFVLLDP---TGRVILDNQEYKKLATDLRVKEPAHTVLDLLR------- 180 (494)
T ss_pred ehhhhhHHHHHHHHHHHHHHHHHHHHhcccceEEEEcC---CCCEEEechhHHHhhchhhhhHHHHHHHHHhh-------
Confidence 3456666666665554332222 24448999999999 99999999999999999877765543322211
Q ss_pred CCCCCChHHHHHHHHHHHhCcceE-EEEEEEeecCc-ceeEEEEEEEeeCCCCCE---------EEEEEEEEeeeccccc
Q 048754 105 RHPLVDPVVVSEIRRCLEEGIEFQ-GELLNFKKDGT-PLVNRLRLAPIRDDDGTV---------THIIGIQIFSEAKIDL 173 (625)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~dG~-~~~~~~~~~~~~d~~g~~---------~~~i~~~~Dit~~~~~ 173 (625)
|. ....+.........+. .+......+|. .+|+.....++.+..+.+ .+++++.+|||++|+.
T Consensus 181 --~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DITe~k~~ 254 (494)
T TIGR02938 181 --EA----WREALAENWPQQLAFSNREARFDRGGGRPARWLSCTGSVIGMESDCADSFFCAAEQPYLLLTIADISNLREE 254 (494)
T ss_pred --HH----hhhhhhhcchhhhccccceeeeccCCCceeeEEEecCceEEeecchhhheeccCCCchheehHHHHHHHHHH
Confidence 11 1111111111111122 23333344444 678888877776655543 3456678899999876
Q ss_pred CC
Q 048754 174 NH 175 (625)
Q Consensus 174 e~ 175 (625)
|+
T Consensus 255 ee 256 (494)
T TIGR02938 255 QE 256 (494)
T ss_pred HH
Confidence 55
No 87
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.28 E-value=0.00036 Score=74.11 Aligned_cols=102 Identities=13% Similarity=0.102 Sum_probs=69.8
Q ss_pred ccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC
Q 048754 45 PGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG 124 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (625)
+++++. .+++|+++|. +|+|+++|+++++++|++.++++|++..++.... . +.+.++.+
T Consensus 83 ~aIL~s--m~eGVi~vD~---~G~I~~iN~aA~~Llg~~~eel~Gk~i~eli~~~------------~----l~~~le~~ 141 (520)
T PRK10820 83 SALLEA--LPEPVLSIDM---KGKVELANPASCQLFGQSEEKLRNHTAAQLINGF------------N----FLRWLESE 141 (520)
T ss_pred HHHHHh--CCCcEEEECC---CCeeeHhHHHHHHHHCcCHHHHCCCcHHHHcCcc------------h----HHHHHHcC
Confidence 344445 9999999999 9999999999999999999999999988775311 1 22334444
Q ss_pred cceEEEEEEEeecCcceeEEEEEEEee--CCCCCE--EEEEEEEEeeecc
Q 048754 125 IEFQGELLNFKKDGTPLVNRLRLAPIR--DDDGTV--THIIGIQIFSEAK 170 (625)
Q Consensus 125 ~~~~~e~~~~~~dG~~~~~~~~~~~~~--d~~g~~--~~~i~~~~Dit~~ 170 (625)
...... .....+|..+. +.+.|+. +++|.. .|.+.+.+|+++.
T Consensus 142 ~~~~~~-~~v~~~g~~~~--v~~~PI~~~d~~g~~~~~GaVivlrd~~~l 188 (520)
T PRK10820 142 PQDSHN-EHVVINGQDFL--MEITPVYLQDENDQHVLVGAVVMLRSTARM 188 (520)
T ss_pred CCccce-EEEEECCEEEE--EEEEeeeecCCCCceeEEEEEEEeccHHHH
Confidence 331111 22334566554 5556765 666653 7888888888754
No 88
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.19 E-value=0.14 Score=48.33 Aligned_cols=203 Identities=11% Similarity=0.090 Sum_probs=103.9
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCC-Ccc-ceEEEEc---CC-EEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLP-RSW-HSSCIIE---GS-KLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTS 457 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~-r~~-~~~~~~~---~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~ 457 (625)
..++++||.|+ .|..++....+.. ... ..+..++ +. +++.+..... ......+.+|++.+++ |..+...
T Consensus 14 ~~~~V~NP~T~--~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~-~~~~~~~~Vys~~~~~--Wr~~~~~ 88 (230)
T TIGR01640 14 KRLVVWNPSTG--QSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG-NRNQSEHQVYTLGSNS--WRTIECS 88 (230)
T ss_pred CcEEEECCCCC--CEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC-CCCCccEEEEEeCCCC--ccccccC
Confidence 46899999999 8998875322111 111 1122221 11 3444433211 1123467889987765 9998742
Q ss_pred CCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeE-eeeccccCcCCCCCCCCCCc----cce
Q 048754 458 WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQ-LECNAFTGVGSQSAVVPPPR----LDH 532 (625)
Q Consensus 458 ~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~-~~~~~~~~~~~~~~~~p~~r----~~~ 532 (625)
.+........+.+++ .||-+........ ...+..||+.+ .+|.. ++ . |..+ ...
T Consensus 89 -~~~~~~~~~~v~~~G-~lyw~~~~~~~~~----~~~IvsFDl~~--E~f~~~i~-~------------P~~~~~~~~~~ 147 (230)
T TIGR01640 89 -PPHHPLKSRGVCING-VLYYLAYTLKTNP----DYFIVSFDVSS--ERFKEFIP-L------------PCGNSDSVDYL 147 (230)
T ss_pred -CCCccccCCeEEECC-EEEEEEEECCCCC----cEEEEEEEccc--ceEeeeee-c------------Cccccccccce
Confidence 221112222445555 7777653321111 12688899994 47875 43 2 2221 122
Q ss_pred EEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCC---cceEEEECCcEEEEEcCcCCCCCcc
Q 048754 533 VAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAW---GHSTCVVGGTRVLVLGGHTGEEWVL 609 (625)
Q Consensus 533 ~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~---~~~~~~~~~~~i~i~GG~~~~~~~~ 609 (625)
..+.. +++|.++...... ..-+||+++-. ++..|++.-.-..++.... .....++.+++|++..+. .. .
T Consensus 148 ~L~~~-~G~L~~v~~~~~~--~~~~IWvl~d~-~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~---~ 219 (230)
T TIGR01640 148 SLINY-KGKLAVLKQKKDT--NNFDLWVLNDA-GKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-EN---P 219 (230)
T ss_pred EEEEE-CCEEEEEEecCCC--CcEEEEEECCC-CCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CC---c
Confidence 33444 7888887654211 12588988732 4567998643222122211 123445566788886653 10 1
Q ss_pred CceEEEEccCC
Q 048754 610 NELHELCLASK 620 (625)
Q Consensus 610 ~d~~~~~~~~~ 620 (625)
.-+..|++.++
T Consensus 220 ~~~~~y~~~~~ 230 (230)
T TIGR01640 220 FYIFYYNVGEN 230 (230)
T ss_pred eEEEEEeccCC
Confidence 12667777653
No 89
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.13 E-value=0.21 Score=47.31 Aligned_cols=224 Identities=21% Similarity=0.282 Sum_probs=121.5
Q ss_pred CeEEEeccCCCCceEEcccCCCCCCcccee-EEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCc
Q 048754 333 DTFVLNLDAANPEWRRVSVKSSPPGRWGHT-LSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRS 411 (625)
Q Consensus 333 ~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~ 411 (625)
.+.++|+.+-...|+.- ..+...+.. ..+..++++|+..+ ...++.+|..+++..|+.-... + -.
T Consensus 4 ~l~~~d~~tG~~~W~~~----~~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~~--~--~~ 69 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD----LGPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDLPG--P--IS 69 (238)
T ss_dssp EEEEEETTTTEEEEEEE----CSSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEECSS--C--GG
T ss_pred EEEEEECCCCCEEEEEE----CCCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeeccc--c--cc
Confidence 37788886655678752 111122222 14435778888843 3479999999997789865422 1 11
Q ss_pred cceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceE-EcCCCCCCCC-CCcceEEEECCcEEEEEcCCcCCCCcc
Q 048754 412 WHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWR-EIPTSWSPPS-RLGHSLSVYGRTKVLMFGGLAKSGHLR 489 (625)
Q Consensus 412 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~-~~~~~~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~ 489 (625)
... ...++.+|+..+ . +.++.+|..+.+..|+ ..... .+.+ .......+. ++.+|+...
T Consensus 70 -~~~-~~~~~~v~v~~~---~----~~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-------- 130 (238)
T PF13360_consen 70 -GAP-VVDGGRVYVGTS---D----GSLYALDAKTGKVLWSIYLTSS-PPAGVRSSSSPAVD-GDRLYVGTS-------- 130 (238)
T ss_dssp -SGE-EEETTEEEEEET---T----SEEEEEETTTSCEEEEEEE-SS-CTCSTB--SEEEEE-TTEEEEEET--------
T ss_pred -cee-eecccccccccc---e----eeeEecccCCcceeeeeccccc-cccccccccCceEe-cCEEEEEec--------
Confidence 112 444668888652 1 2789999999999999 44431 1112 222333333 436766643
Q ss_pred cccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCc--cceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCC
Q 048754 490 LRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPR--LDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEK 567 (625)
Q Consensus 490 ~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r--~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~ 567 (625)
...++.+|+.++...|..-...+ .+..+... ...+...+.++.+|+..+.. .+..+|+.+..
T Consensus 131 --~g~l~~~d~~tG~~~w~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-------~~~~~d~~tg~ 194 (238)
T PF13360_consen 131 --SGKLVALDPKTGKLLWKYPVGEP-------RGSSPISSFSDINGSPVISDGRVYVSSGDG-------RVVAVDLATGE 194 (238)
T ss_dssp --CSEEEEEETTTTEEEEEEESSTT--------SS--EEEETTEEEEEECCTTEEEEECCTS-------SEEEEETTTTE
T ss_pred --cCcEEEEecCCCcEEEEeecCCC-------CCCcceeeecccccceEEECCEEEEEcCCC-------eEEEEECCCCC
Confidence 26889999987666787654221 00000000 11234444467888875532 36777985333
Q ss_pred CCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 568 PSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 568 ~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
..|+.. ..+ ..+.....++.+|+.. . -+.++.+|+.+-
T Consensus 195 ~~w~~~-~~~-------~~~~~~~~~~~l~~~~-~------~~~l~~~d~~tG 232 (238)
T PF13360_consen 195 KLWSKP-ISG-------IYSLPSVDGGTLYVTS-S------DGRLYALDLKTG 232 (238)
T ss_dssp EEEEEC-SS--------ECECEECCCTEEEEEE-T------TTEEEEEETTTT
T ss_pred EEEEec-CCC-------ccCCceeeCCEEEEEe-C------CCEEEEEECCCC
Confidence 348443 211 1121334445666655 2 256777777653
No 90
>PRK13684 Ycf48-like protein; Provisional
Probab=97.02 E-value=0.44 Score=47.68 Aligned_cols=244 Identities=15% Similarity=0.178 Sum_probs=116.5
Q ss_pred CeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccC-CCCCCccceeEEEEcCC
Q 048754 291 VCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVK-SSPPGRWGHTLSSLNGS 369 (625)
Q Consensus 291 ~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~ 369 (625)
..|++.....+ .......+....++..|+.|.. -.+|.......+|+++..+ ..|. ..+....+.++
T Consensus 76 ~tW~~~~~~~~-~~~~~l~~v~~~~~~~~~~G~~---------g~i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~ 143 (334)
T PRK13684 76 ETWEERSLDLP-EENFRLISISFKGDEGWIVGQP---------SLLLHTTDGGKNWTRIPLSEKLPG--SPYLITALGPG 143 (334)
T ss_pred CCceECccCCc-ccccceeeeEEcCCcEEEeCCC---------ceEEEECCCCCCCeEccCCcCCCC--CceEEEEECCC
Confidence 47988753211 1111122222335556665532 1133333334689988532 1222 22234444455
Q ss_pred EEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEE-ecCCCC
Q 048754 370 WLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLL-DLTTDK 448 (625)
Q Consensus 370 ~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~-d~~~~~ 448 (625)
.+++.|..+ .+++-+-.-. +|+.+.... .-..+......++.+++.|.. + .++.- | ...
T Consensus 144 ~~~~~g~~G------~i~~S~DgG~--tW~~~~~~~---~g~~~~i~~~~~g~~v~~g~~---G----~i~~s~~--~gg 203 (334)
T PRK13684 144 TAEMATNVG------AIYRTTDGGK--NWEALVEDA---AGVVRNLRRSPDGKYVAVSSR---G----NFYSTWE--PGQ 203 (334)
T ss_pred cceeeeccc------eEEEECCCCC--CceeCcCCC---cceEEEEEECCCCeEEEEeCC---c----eEEEEcC--CCC
Confidence 567666422 3444333333 899887532 223334444445444544431 1 22322 2 232
Q ss_pred CceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCC
Q 048754 449 PMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPP 528 (625)
Q Consensus 449 ~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~ 528 (625)
.+|+.+.. +..+.-++++...++.++++|... ..++...+...+|+.+... ....
T Consensus 204 ~tW~~~~~---~~~~~l~~i~~~~~g~~~~vg~~G-----------~~~~~s~d~G~sW~~~~~~-----------~~~~ 258 (334)
T PRK13684 204 TAWTPHQR---NSSRRLQSMGFQPDGNLWMLARGG-----------QIRFNDPDDLESWSKPIIP-----------EITN 258 (334)
T ss_pred CeEEEeeC---CCcccceeeeEcCCCCEEEEecCC-----------EEEEccCCCCCccccccCC-----------cccc
Confidence 34998863 334444555555666888886531 1223212224689976421 0111
Q ss_pred cc-ceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCc
Q 048754 529 RL-DHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGH 602 (625)
Q Consensus 529 r~-~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~ 602 (625)
.. .+++....++.++++|.. ..++. ... .-.+|+.+......| .....++..++++.++.|..
T Consensus 259 ~~~l~~v~~~~~~~~~~~G~~-------G~v~~-S~d-~G~tW~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 259 GYGYLDLAYRTPGEIWAGGGN-------GTLLV-SKD-GGKTWEKDPVGEEVP--SNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred ccceeeEEEcCCCCEEEEcCC-------CeEEE-eCC-CCCCCeECCcCCCCC--cceEEEEEeCCCceEEECCC
Confidence 11 223333436678888653 22332 221 467999875322233 23455666666788888763
No 91
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=97.00 E-value=0.0003 Score=73.64 Aligned_cols=98 Identities=19% Similarity=0.268 Sum_probs=64.5
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGE 130 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 130 (625)
++++++++++|. +|+|+++|+++++++||+.++++|++...+.. .+.... .+.. ......
T Consensus 105 ~~~~~~i~~~d~---~g~i~~~N~~a~~l~g~~~~~~~g~~~~~~~~------------~~~~~~----~~~~-~~~~~~ 164 (430)
T PRK11006 105 ESLPDAVVLTTE---EGNIFWCNGLAQQLLGFRWPEDNGQNILNLLR------------YPEFTQ----YLKT-RDFSRP 164 (430)
T ss_pred HhCCCeEEEEcC---CCceeHHHHHHHHHhCCCChHhCCCcHHHHhc------------CHHHHH----HHHh-cccCCC
Confidence 449999999999 99999999999999999999999998766642 112211 1111 111122
Q ss_pred EEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
......++. ++.+.+.|..+ + ..+.+.+|||+++++++
T Consensus 165 ~~~~~~~~~--~~~~~~~~~~~--~---~~~~~~~dit~~~~~e~ 202 (430)
T PRK11006 165 LTLVLNNGR--HLEIRVMPYTE--G---QLLMVARDVTQMHQLEG 202 (430)
T ss_pred eEEEcCCCC--EEEEEEEEcCC--C---cEEEEEehhhHHHHHHH
Confidence 223334454 45666666543 2 24667899998876543
No 92
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=96.95 E-value=0.00063 Score=45.72 Aligned_cols=45 Identities=36% Similarity=0.700 Sum_probs=38.3
Q ss_pred ccCchhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHhhhhh
Q 048754 213 LQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQ 258 (625)
Q Consensus 213 ~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (625)
..+|+|++ ..++..+++.|+..+..+||+|+.++.+..+|+..+.
T Consensus 2 ~~LP~Eil-~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 2 SSLPDEIL-LEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCS-HHHH-HHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred hHhHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 46899999 8999999999999999999999999998899987653
No 93
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.81 E-value=0.73 Score=46.97 Aligned_cols=248 Identities=13% Similarity=0.155 Sum_probs=116.3
Q ss_pred cCeeEEeeecCCCCCCC--cccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCC-CCCCccceeEEEE
Q 048754 290 AVCWRKFTVRGAVEPSR--CNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKS-SPPGRWGHTLSSL 366 (625)
Q Consensus 290 ~~~W~~~~~~~~~p~~r--~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-~p~~r~~~~~~~~ 366 (625)
-..|.+..........+ ...++...++..|+.|-. -.+|.......+|+++..+. +|.. ......+
T Consensus 119 G~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~---------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~ 187 (398)
T PLN00033 119 GKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP---------AILLHTSDGGETWERIPLSPKLPGE--PVLIKAT 187 (398)
T ss_pred CCCceECccCcccccccccceeeeEEECCEEEEEcCc---------eEEEEEcCCCCCceECccccCCCCC--ceEEEEE
Confidence 35788764222111111 234444567788888643 23444444457999875332 1222 2334445
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCC--CCCCC--------------ccceEEEEcCCEEEEEcCcC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGA--PPLPR--------------SWHSSCIIEGSKLVVSGGCT 430 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~--~p~~r--------------~~~~~~~~~~~~iyv~GG~~ 430 (625)
.++.++++|..+ .+++-+-.-. +|+.+.... .|..+ .........++.++++|-.
T Consensus 188 ~~~~~~ivg~~G------~v~~S~D~G~--tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~- 258 (398)
T PLN00033 188 GPKSAEMVTDEG------AIYVTSNAGR--NWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR- 258 (398)
T ss_pred CCCceEEEeccc------eEEEECCCCC--CceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECC-
Confidence 455688887432 2444433333 798763211 01111 0111122233345554421
Q ss_pred CCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCcee--
Q 048754 431 DAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWK-- 508 (625)
Q Consensus 431 ~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~-- 508 (625)
..++.-. +.....|+.+.. +.++.-.++....++.+++.|.. ..++.-+-. ...|+
T Consensus 259 ------G~~~~s~-d~G~~~W~~~~~---~~~~~l~~v~~~~dg~l~l~g~~----------G~l~~S~d~--G~~~~~~ 316 (398)
T PLN00033 259 ------GNFYLTW-EPGQPYWQPHNR---ASARRIQNMGWRADGGLWLLTRG----------GGLYVSKGT--GLTEEDF 316 (398)
T ss_pred ------ccEEEec-CCCCcceEEecC---CCccceeeeeEcCCCCEEEEeCC----------ceEEEecCC--CCccccc
Confidence 1233222 122223888874 44444445555556688887643 223332222 33443
Q ss_pred EeeeccccCcCCCCCCCCCCccc-eEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcce
Q 048754 509 QLECNAFTGVGSQSAVVPPPRLD-HVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHS 587 (625)
Q Consensus 509 ~~~~~~~~~~~~~~~~~p~~r~~-~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~ 587 (625)
.+... ..+..+.. ..+....++.++++|.. .-+++-.. .-.+|+.+......+...+ .
T Consensus 317 ~f~~~----------~~~~~~~~l~~v~~~~d~~~~a~G~~-------G~v~~s~D--~G~tW~~~~~~~~~~~~ly--~ 375 (398)
T PLN00033 317 DFEEA----------DIKSRGFGILDVGYRSKKEAWAAGGS-------GILLRSTD--GGKSWKRDKGADNIAANLY--S 375 (398)
T ss_pred ceeec----------ccCCCCcceEEEEEcCCCcEEEEECC-------CcEEEeCC--CCcceeEccccCCCCccee--E
Confidence 22222 01222222 23334446788888763 23333333 5779999864333333333 4
Q ss_pred EEEECCcEEEEEc
Q 048754 588 TCVVGGTRVLVLG 600 (625)
Q Consensus 588 ~~~~~~~~i~i~G 600 (625)
+....+++.++.|
T Consensus 376 v~f~~~~~g~~~G 388 (398)
T PLN00033 376 VKFFDDKKGFVLG 388 (398)
T ss_pred EEEcCCCceEEEe
Confidence 4445557888887
No 94
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.70 E-value=0.064 Score=51.51 Aligned_cols=125 Identities=17% Similarity=0.224 Sum_probs=77.1
Q ss_pred EEEEccCCCCC--ccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 371 LVVFGGCGRQG--LLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 371 iyv~GG~~~~~--~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
|||-|-+...+ ....+-.||+.+. +|..+... -..-. .+....+++++|+.|-.+.++.....+..||.++.+
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~~--qW~~~g~~--i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDNS--QWSSPGNG--ISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCCC--EeecCCCC--ceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 35555565444 3567888999998 99998764 11211 233334677899888766555445678889987766
Q ss_pred CceEEcCCC---CCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeee
Q 048754 449 PMWREIPTS---WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLEC 512 (625)
Q Consensus 449 ~~W~~~~~~---~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~ 512 (625)
|+.+... ..|.+....+....+...+++.|.. ..+ ..-+..|| ..+|..+..
T Consensus 76 --w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g-----~~~l~~~d----Gs~W~~i~~ 130 (281)
T PF12768_consen 76 --WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS-ANG-----STFLMKYD----GSSWSSIGS 130 (281)
T ss_pred --eeecCCcccccCCCcEEEEEeeccCCceEEEecee-cCC-----CceEEEEc----CCceEeccc
Confidence 9888752 2344432222222234467877766 322 25566775 458998876
No 95
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.54 E-value=0.16 Score=48.90 Aligned_cols=124 Identities=20% Similarity=0.296 Sum_probs=74.6
Q ss_pred EEEcccCCCCC-CCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCC-ccccEEEEECCCCCC
Q 048754 319 VLFGGEGVNMQ-PMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQG-LLNDVFVLDLDAKQP 396 (625)
Q Consensus 319 yv~GG~~~~~~-~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~t~~~ 396 (625)
||-|-+..... .+..+..||... .+|..+. ....... .++..++++++|+.|-+.-.+ ....+-.||..+.
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~--~qW~~~g--~~i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~-- 74 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDN--SQWSSPG--NGISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ-- 74 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCC--CEeecCC--CCceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC--
Confidence 44444433322 466688999888 6999763 2211111 233334577899888765433 4556888999999
Q ss_pred EEEEcCCC---CCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCC
Q 048754 397 TWIEVSGG---APPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPT 456 (625)
Q Consensus 397 ~W~~~~~~---~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~ 456 (625)
+|..+... ..|.+.........+...+++.|... .+ ...+..|| ..+ |..+..
T Consensus 75 ~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~-~g--~~~l~~~d--Gs~--W~~i~~ 130 (281)
T PF12768_consen 75 TWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSA-NG--STFLMKYD--GSS--WSSIGS 130 (281)
T ss_pred eeeecCCcccccCCCcEEEEEeeccCCceEEEeceec-CC--CceEEEEc--CCc--eEeccc
Confidence 99988763 23444432222233566788887762 22 23566676 444 999875
No 96
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.45 E-value=0.0074 Score=65.38 Aligned_cols=100 Identities=17% Similarity=0.233 Sum_probs=67.3
Q ss_pred CCCeeEEEecCCCCCCCEEEEehHHHHHhCCCc---hhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceE
Q 048754 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRA---DEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQ 128 (625)
Q Consensus 52 ~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~---~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (625)
..+++|+++|. +|+|+++|+++++++|++. ++.+|+....+.. ...+.+.+..+....
T Consensus 229 ~~~~gIi~~D~---~g~I~~~N~~a~~llg~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~ 289 (542)
T PRK11086 229 SIKEGVIAVDD---RGEVTLINDEAKRLFNYKKGLEDDPLGTDVESWMP----------------VSRLKEVLRTGTPRR 289 (542)
T ss_pred HhcCcEEEECC---CCeEEEEhHHHHHHhCCCcCCcccccCCcHHHhCC----------------chhHHHHHhcCCCcc
Confidence 38899999999 9999999999999998753 3455554443321 112333444444333
Q ss_pred EEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 129 GELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 129 ~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.+. ...+|. .+.+...|+.+ +|.+.+++.+.+|+|+.+++++
T Consensus 290 ~~~--~~~~g~--~~~~~~~pi~~-~g~~~g~v~~~rDite~~~l~~ 331 (542)
T PRK11086 290 DEE--ININGR--LLLTNTVPVRV-NGEIIGAIATFRDKTEVRQLAQ 331 (542)
T ss_pred ceE--EEECCE--EEEEEEEEEeE-CCEEEEEEEEEEEchHHHHHHH
Confidence 221 122444 44566788887 7899999999999999876644
No 97
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.45 E-value=1.2 Score=47.47 Aligned_cols=189 Identities=12% Similarity=0.061 Sum_probs=98.0
Q ss_pred cccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCC-CC-CCc-cceeEEEEcCCEEEEEccCCCCCcc
Q 048754 307 CNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKS-SP-PGR-WGHTLSSLNGSWLVVFGGCGRQGLL 383 (625)
Q Consensus 307 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-~p-~~r-~~~~~~~~~~~~iyv~GG~~~~~~~ 383 (625)
...+.++.++.+|+.... ..++.+|..+-...|+.-.... .+ .+. .....+...+++||+... .
T Consensus 53 ~~~sPvv~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------~ 119 (488)
T cd00216 53 QEGTPLVVDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------D 119 (488)
T ss_pred cccCCEEECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------C
Confidence 334556779999987653 2389999987667898532111 00 011 111122222267776543 2
Q ss_pred ccEEEEECCCCCCEEEEcCCCCC-CCCCccceEEEEcCCEEEEEcCcCCCC---ceeceEEEEecCCCCCceEEcCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAP-PLPRSWHSSCIIEGSKLVVSGGCTDAG---VLLSDTYLLDLTTDKPMWREIPTSWS 459 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~-p~~r~~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~~d~~~~~~~W~~~~~~~~ 459 (625)
..++.+|..|++..|+.-..... +......+.++. ++.+|+ |...... .....++.||..+.+..|+.-.....
T Consensus 120 g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~ 197 (488)
T cd00216 120 GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD 197 (488)
T ss_pred CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCC
Confidence 36899999999889986543211 111112223333 545554 4321110 12357899999999999975332111
Q ss_pred C--CC--------------CCcceEEEE-CCcEEEEEcCCcCCC--------CcccccCceEEEEcCCCCCceeEe
Q 048754 460 P--PS--------------RLGHSLSVY-GRTKVLMFGGLAKSG--------HLRLRSGESYTIDLGDEEPQWKQL 510 (625)
Q Consensus 460 p--~~--------------r~~~~~~~~-~~~~l~v~GG~~~~~--------~~~~~~~~~~~~d~~~~~~~W~~~ 510 (625)
+ .+ ....+.++. .++.+|+-.|..... ......+.++.+|.++.+..|+.-
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 198 PNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred cCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 1 01 011122222 233566543321000 000113579999999888899864
No 98
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms]
Probab=96.25 E-value=0.044 Score=49.38 Aligned_cols=112 Identities=26% Similarity=0.304 Sum_probs=76.3
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHH-HHhCcceE
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRC-LEEGIEFQ 128 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 128 (625)
++..+++++..|. ++.+.++|+++.+++|++..+..+.....+.... ............. ........
T Consensus 118 ~~~~~~~~~~~d~---~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 186 (232)
T COG2202 118 LEASPDGIWVLDE---DGRILYANPAAEELLGYSPEEELGRGLSDLIHPE--------DEERRELELARALAEGRGGPLE 186 (232)
T ss_pred HhhCCceEEEEeC---CCCEEEeCHHHHHHhCCChHHhcCCChhheEecC--------CCchhhHHHHHHhhccCCCCcc
Confidence 3448899999999 9999999999999999998887776655543211 0110011111121 22334466
Q ss_pred EEEEEEeecCcc-eeEEEEEEEeeCCCCCEEEEEEEEEeeeccccc
Q 048754 129 GELLNFKKDGTP-LVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDL 173 (625)
Q Consensus 129 ~e~~~~~~dG~~-~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~ 173 (625)
.+.....++|.. .+......+... .|.+..+.....|++++++.
T Consensus 187 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~ 231 (232)
T COG2202 187 IEYRVRRKDGERVRWILSRISPVRD-DGEIVGVVGIARDITERKQA 231 (232)
T ss_pred eEEEEEecCCCEEEEEEeeeeEecC-CCceEEEEEEEechHHHhhc
Confidence 677888899985 777777766654 68888888888899887643
No 99
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.11 E-value=1.7 Score=43.85 Aligned_cols=256 Identities=14% Similarity=0.106 Sum_probs=118.3
Q ss_pred EEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE--cCCEEEEEccCCCCCccccEEEEECCCCCCE
Q 048754 320 LFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL--NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPT 397 (625)
Q Consensus 320 v~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~ 397 (625)
++|++.. .....+++|.++..+.++..+...... ...+..++ .++.||+..... .-...+..|.+...+.+
T Consensus 3 ~vgsy~~--~~~~gI~~~~~d~~~g~l~~~~~~~~~---~~Ps~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~ 75 (345)
T PF10282_consen 3 YVGSYTN--GKGGGIYVFRFDEETGTLTLVQTVAEG---ENPSWLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGT 75 (345)
T ss_dssp EEEECCS--SSSTEEEEEEEETTTTEEEEEEEEEES---SSECCEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTE
T ss_pred EEEcCCC--CCCCcEEEEEEcCCCCCceEeeeecCC---CCCceEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcce
Confidence 3455543 223458888886655788877531111 11122223 567888886543 11234555554443237
Q ss_pred EEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEc----------CCCCCCCCCCcce
Q 048754 398 WIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREI----------PTSWSPPSRLGHS 467 (625)
Q Consensus 398 W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~----------~~~~~p~~r~~~~ 467 (625)
.+.+...........|.++.-+++.+|+.-- . ...+.+|+++... .-... +.......-..|.
T Consensus 76 L~~~~~~~~~g~~p~~i~~~~~g~~l~vany-~-----~g~v~v~~l~~~g-~l~~~~~~~~~~g~g~~~~rq~~~h~H~ 148 (345)
T PF10282_consen 76 LTLLNSVPSGGSSPCHIAVDPDGRFLYVANY-G-----GGSVSVFPLDDDG-SLGEVVQTVRHEGSGPNPDRQEGPHPHQ 148 (345)
T ss_dssp EEEEEEEEESSSCEEEEEECTTSSEEEEEET-T-----TTEEEEEEECTTS-EEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred eEEeeeeccCCCCcEEEEEecCCCEEEEEEc-c-----CCeEEEEEccCCc-ccceeeeecccCCCCCccccccccccee
Confidence 7766532111111122222225556666421 1 1356667765431 11111 0000112233466
Q ss_pred EEEECC-cEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCcc-ceEEEEecCCEEEEE
Q 048754 468 LSVYGR-TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRL-DHVAVSMPCGRIIIF 545 (625)
Q Consensus 468 ~~~~~~-~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~-~~~~~~~~~~~l~v~ 545 (625)
+....+ +.+|+..= + .+.+++|+++....+........ .|..-. .|.++.-.+..+||+
T Consensus 149 v~~~pdg~~v~v~dl----G-----~D~v~~~~~~~~~~~l~~~~~~~----------~~~G~GPRh~~f~pdg~~~Yv~ 209 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDL----G-----ADRVYVYDIDDDTGKLTPVDSIK----------VPPGSGPRHLAFSPDGKYAYVV 209 (345)
T ss_dssp EEE-TTSSEEEEEET----T-----TTEEEEEEE-TTS-TEEEEEEEE----------CSTTSSEEEEEE-TTSSEEEEE
T ss_pred EEECCCCCEEEEEec----C-----CCEEEEEEEeCCCceEEEeeccc----------cccCCCCcEEEEcCCcCEEEEe
Confidence 655544 36666521 1 48899999885433355433331 122111 234444335689998
Q ss_pred ecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCC---CCCCcceEE-EECCc-EEEEEcCcCCCCCccCceEEEEccCC
Q 048754 546 GGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPP---KFAWGHSTC-VVGGT-RVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 546 GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p---~~r~~~~~~-~~~~~-~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
... .+.|.+|++...+..++.+......| ......+.+ +..++ .||+-- .. .+.|.+|+++..
T Consensus 210 ~e~------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn-r~-----~~sI~vf~~d~~ 277 (345)
T PF10282_consen 210 NEL------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN-RG-----SNSISVFDLDPA 277 (345)
T ss_dssp ETT------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE-CT-----TTEEEEEEECTT
T ss_pred cCC------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe-cc-----CCEEEEEEEecC
Confidence 664 56777777732356666665322222 222223333 44444 455532 22 356777777443
No 100
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.07 E-value=1.6 Score=42.59 Aligned_cols=247 Identities=17% Similarity=0.179 Sum_probs=104.5
Q ss_pred CeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCE
Q 048754 291 VCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSW 370 (625)
Q Consensus 291 ~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~ 370 (625)
..|.........+......+....++..|+.|-. -.++.......+|+++..+. +.|-..+....+.++.
T Consensus 47 ~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~---------g~ll~T~DgG~tW~~v~l~~-~lpgs~~~i~~l~~~~ 116 (302)
T PF14870_consen 47 KTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP---------GLLLHTTDGGKTWERVPLSS-KLPGSPFGITALGDGS 116 (302)
T ss_dssp SS-EE-----S-----EEEEEEEETTEEEEEEET---------TEEEEESSTTSS-EE----T-T-SS-EEEEEEEETTE
T ss_pred ccccccccCCCccceeeEEEEEecCCceEEEcCC---------ceEEEecCCCCCcEEeecCC-CCCCCeeEEEEcCCCc
Confidence 5798876332222122223333457889988742 12444444457999985332 2233335556666778
Q ss_pred EEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCc
Q 048754 371 LVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPM 450 (625)
Q Consensus 371 iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~ 450 (625)
++++|.. ..+|+=. ..-.+|+.+... .. -.-..+....++.+++++.. + +-....|+... .
T Consensus 117 ~~l~~~~------G~iy~T~--DgG~tW~~~~~~--~~-gs~~~~~r~~dG~~vavs~~---G---~~~~s~~~G~~--~ 177 (302)
T PF14870_consen 117 AELAGDR------GAIYRTT--DGGKTWQAVVSE--TS-GSINDITRSSDGRYVAVSSR---G---NFYSSWDPGQT--T 177 (302)
T ss_dssp EEEEETT--------EEEES--STTSSEEEEE-S-------EEEEEE-TTS-EEEEETT---S---SEEEEE-TT-S--S
T ss_pred EEEEcCC------CcEEEeC--CCCCCeeEcccC--Cc-ceeEeEEECCCCcEEEEECc---c---cEEEEecCCCc--c
Confidence 8888753 2344332 222389987643 21 12222334455566655532 1 12233464333 3
Q ss_pred eEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCcc
Q 048754 451 WREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRL 530 (625)
Q Consensus 451 W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~ 530 (625)
|+... .+..|.-.++....++.|++.. .. ..+..-+......+|.+.... ......
T Consensus 178 w~~~~---r~~~~riq~~gf~~~~~lw~~~-~G---------g~~~~s~~~~~~~~w~~~~~~-----------~~~~~~ 233 (302)
T PF14870_consen 178 WQPHN---RNSSRRIQSMGFSPDGNLWMLA-RG---------GQIQFSDDPDDGETWSEPIIP-----------IKTNGY 233 (302)
T ss_dssp -EEEE-----SSS-EEEEEE-TTS-EEEEE-TT---------TEEEEEE-TTEEEEE---B-T-----------TSS--S
T ss_pred ceEEc---cCccceehhceecCCCCEEEEe-CC---------cEEEEccCCCCccccccccCC-----------cccCce
Confidence 98876 3455666677677777888864 11 233333311113467763221 112223
Q ss_pred ceEE-EEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcC
Q 048754 531 DHVA-VSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGG 601 (625)
Q Consensus 531 ~~~~-~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG 601 (625)
+... ....++.+++.||.. .++ +..+ .-.+|++.......|.. .......++++-+|+|-
T Consensus 234 ~~ld~a~~~~~~~wa~gg~G-------~l~-~S~D-gGktW~~~~~~~~~~~n--~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 234 GILDLAYRPPNEIWAVGGSG-------TLL-VSTD-GGKTWQKDRVGENVPSN--LYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp -EEEEEESSSS-EEEEESTT--------EE-EESS-TTSS-EE-GGGTTSSS-----EEEEEETTEEEEE-S
T ss_pred eeEEEEecCCCCEEEEeCCc-------cEE-EeCC-CCccceECccccCCCCc--eEEEEEcCCCceEEECC
Confidence 3333 333367899998852 333 3332 57899999753334433 23444555568888884
No 101
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=96.00 E-value=0.0021 Score=65.50 Aligned_cols=153 Identities=16% Similarity=0.085 Sum_probs=99.7
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
..+++++++. ...+..+|..+..+.+-....++|.+..++.... ... . ..++........
T Consensus 10 ~~~~~~vi~~---~~~~~~~~~~a~~~~~~~~~~~i~~~~~~i~~~~----------~~~------~-v~~~~~~~~~~~ 69 (560)
T COG3829 10 ILDGPVVIDK---NTGIDVANALALAKRQKNAEAVIGRPLREILETL----------GME------R-VEQSRDKELTER 69 (560)
T ss_pred cccceEEEEc---CCceeeechHHHHhhhcceEEEecccceeecccc----------Ccc------e-eeccCccceeee
Confidence 7788888888 8899999999999999999999998777664311 000 0 112222222222
Q ss_pred EEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCcchhhhhhhhccccc---cccccccCCCCCCcccccc
Q 048754 133 NFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYD---QSAQYFSGGHSPLSQHQDI 209 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~n~~~ 209 (625)
...+ + ....+...++.++.+++++++.+..|+++..+.-+..+...++.+...++ ....++|..+.+++.|.+.
T Consensus 70 ~~~~-~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~l~~~~~~l~~il~~~~~~l~vvD~~G~~i~~N~~~ 146 (560)
T COG3829 70 LKLK-V--KRIVVVGKTPVDEQGRVVGVLEVFLDISEALELIEENLRQLRQRLEAILDSIDDGLLVVDEDGIIIYYNKAY 146 (560)
T ss_pred eecc-c--eeEEEcCCceeecCCceeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEcCCCcEEEEcHHH
Confidence 2222 2 22233334445678899999999999998655433222233344444443 3333457777778999999
Q ss_pred cccccCc-hhHHHHhhhccc
Q 048754 210 CGILQLS-DEVLAHNILSRL 228 (625)
Q Consensus 210 ~~~~g~~-~e~~~~~~~~~~ 228 (625)
..++|++ ++++|.++.+++
T Consensus 147 ~~~~gl~~e~~~gk~~~~v~ 166 (560)
T COG3829 147 AKLLGLSPEEVLGKHLLDVV 166 (560)
T ss_pred HHHhCCCHHHHcCCcHHHHH
Confidence 9999999 888987776665
No 102
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.95 E-value=0.019 Score=63.28 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=66.7
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGE 130 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 130 (625)
+...++|+++|. +|+|+++|+++++++|++.++++|++..+++. .. ..+.+.+..+......
T Consensus 210 ~~~~~gVl~vD~---~G~I~~~N~aa~~llg~s~~~l~G~~i~~l~~------------~~---~~l~~vl~~~~~~~~~ 271 (638)
T PRK11388 210 ESMDDGVIAWDE---QGNLQFLNAQAARLLRLDATASQGRAITELLT------------LP---AVLQQAIKQAHPLKHV 271 (638)
T ss_pred hccCCcEEEECC---CCeEehhhHHHHHHhCcCHHHHCCCcHHHHhc------------cc---hHHHHHHhcCCceeeE
Confidence 347889999999 99999999999999999999999998877752 11 1233445555544332
Q ss_pred EEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeec
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEA 169 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~ 169 (625)
......+|..+++.+.+.|+.+..|. +++.+.+++++
T Consensus 272 ~~~l~~~g~~~~~~v~~~Pi~~~~g~--~~v~~l~~~~~ 308 (638)
T PRK11388 272 EVTFESQGQFIDAVITLKPIIEGQGT--SFILLLHPVEQ 308 (638)
T ss_pred EEEEecCCceEEEEEEEEeecccCce--EEEEEehhhHH
Confidence 22233456666788888898654443 24444455544
No 103
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=95.87 E-value=0.03 Score=52.82 Aligned_cols=90 Identities=21% Similarity=0.291 Sum_probs=69.8
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE-EE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG-EL 131 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~ 131 (625)
....+++.|. ++.|.|+|++++.+|+.+..-+.+.....++.. .......+.+..+.+..+.. ++
T Consensus 16 ~~~pVl~vd~---~~~i~yaN~aAe~~~~~Sa~~L~~~~l~~l~~~-----------gs~ll~ll~q~~~~~~~~~~~~v 81 (363)
T COG3852 16 LINPVLLVDD---ELAIHYANPAAEQLLAVSARRLAGTRLSELLPF-----------GSLLLSLLDQVLERGQPVTEYEV 81 (363)
T ss_pred cCCceEEEcC---CCcEEecCHHHHHHHHHHHHHHhcCChHHHcCC-----------CcHHHHHHHHHHHhcCCccccee
Confidence 7788999999 999999999999999999999999988877642 23445566666666666554 33
Q ss_pred EEEeecCcceeEEEEEEEeeCCCCCE
Q 048754 132 LNFKKDGTPLVNRLRLAPIRDDDGTV 157 (625)
Q Consensus 132 ~~~~~dG~~~~~~~~~~~~~d~~g~~ 157 (625)
.+. .+|....+...+.|+....|.+
T Consensus 82 ~l~-~~g~~~~v~~~v~~v~~~~G~v 106 (363)
T COG3852 82 TLV-ILGRSHIVDLTVAPVPEEPGSV 106 (363)
T ss_pred eee-ecCccceEEEEEeeccCCCCeE
Confidence 333 6899989999999998766654
No 104
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.86 E-value=2.2 Score=42.65 Aligned_cols=152 Identities=13% Similarity=-0.029 Sum_probs=70.4
Q ss_pred EEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECC-CC
Q 048754 317 RLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLD-AK 394 (625)
Q Consensus 317 ~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~-t~ 394 (625)
++|+..+.+ +.+.+|++.+. .+++.+..- +.....+.++.- +++.+|+.+. . .+.+..|++. ++
T Consensus 3 ~~y~~~~~~------~~I~~~~~~~~-g~l~~~~~~--~~~~~~~~l~~spd~~~lyv~~~-~----~~~i~~~~~~~~g 68 (330)
T PRK11028 3 IVYIASPES------QQIHVWNLNHE-GALTLLQVV--DVPGQVQPMVISPDKRHLYVGVR-P----EFRVLSYRIADDG 68 (330)
T ss_pred EEEEEcCCC------CCEEEEEECCC-CceeeeeEE--ecCCCCccEEECCCCCEEEEEEC-C----CCcEEEEEECCCC
Confidence 567775542 34888888542 466655321 111111222222 3556777543 2 2457677775 33
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
++..+.....+ ....|.+..-+++.+|+..- . .+.+.+|+++++......+.. .+.....|++++..++
T Consensus 69 --~l~~~~~~~~~-~~p~~i~~~~~g~~l~v~~~-~-----~~~v~v~~~~~~g~~~~~~~~--~~~~~~~~~~~~~p~g 137 (330)
T PRK11028 69 --ALTFAAESPLP-GSPTHISTDHQGRFLFSASY-N-----ANCVSVSPLDKDGIPVAPIQI--IEGLEGCHSANIDPDN 137 (330)
T ss_pred --ceEEeeeecCC-CCceEEEECCCCCEEEEEEc-C-----CCeEEEEEECCCCCCCCceee--ccCCCcccEeEeCCCC
Confidence 55544322111 11122222224556666532 1 246777887543211222211 1111223555454333
Q ss_pred -EEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 475 -KVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 475 -~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
.+|+..-. .+.+++||+++
T Consensus 138 ~~l~v~~~~---------~~~v~v~d~~~ 157 (330)
T PRK11028 138 RTLWVPCLK---------EDRIRLFTLSD 157 (330)
T ss_pred CEEEEeeCC---------CCEEEEEEECC
Confidence 56664321 37889999873
No 105
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=95.80 E-value=0.0068 Score=61.94 Aligned_cols=105 Identities=23% Similarity=0.344 Sum_probs=74.6
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
++.+.++++++|. +|+++++|.++..++|++.++++|++..++... .......+.+.++.+...
T Consensus 123 l~~~~~~l~vvD~---~G~~i~~N~~~~~~~gl~~e~~~gk~~~~v~~~-------------~~~s~~l~vl~~~kp~~~ 186 (560)
T COG3829 123 LDSIDDGLLVVDE---DGIIIYYNKAYAKLLGLSPEEVLGKHLLDVVSA-------------GEDSTLLEVLRTGKPIRD 186 (560)
T ss_pred HhhccCceEEEcC---CCcEEEEcHHHHHHhCCCHHHHcCCcHHHHHhc-------------cCCceehhhhhcCCccee
Confidence 3448999999999 999999999999999999999999987777410 011234456667776655
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
....+. |... .....|+. .+|.+.+.+++.+|+++-+.+..
T Consensus 187 ~~~~~~--~~~~--i~~~~pv~-~~g~l~G~v~~~~~~~~l~~l~~ 227 (560)
T COG3829 187 VVQTYN--GNKI--IVNVAPVY-ADGQLIGVVGISKDVSELERLTR 227 (560)
T ss_pred eeeeec--CCce--eEeeccEe-cCCcEEEEEEeecchHHHHHHHH
Confidence 444332 2221 34555655 46699999999999998765543
No 106
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.77 E-value=0.3 Score=46.64 Aligned_cols=41 Identities=22% Similarity=0.384 Sum_probs=36.0
Q ss_pred hhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHhhhhh
Q 048754 217 DEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQ 258 (625)
Q Consensus 217 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (625)
+++. ..++..+...++..+..+|++|+.++.++-+||++..
T Consensus 84 ~hi~-e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie 124 (499)
T KOG0281|consen 84 DHIA-ENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIE 124 (499)
T ss_pred HHHH-HHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 4444 8899999999999999999999999999999998644
No 107
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.73 E-value=3.5 Score=43.86 Aligned_cols=226 Identities=14% Similarity=0.131 Sum_probs=112.4
Q ss_pred EEEC-CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCC-CCCccceeEEEEcCCEEEEEccCCCC----Ccccc
Q 048754 312 CAAG-NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSS-PPGRWGHTLSSLNGSWLVVFGGCGRQ----GLLND 385 (625)
Q Consensus 312 ~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~-p~~r~~~~~~~~~~~~iyv~GG~~~~----~~~~~ 385 (625)
++.+ +.||+.... ..++.+|..+-+..|+.-..... +......+.+ +.++.+| +|..+.. .....
T Consensus 106 ~~~~~~~V~v~~~~-------g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~-v~~~~v~-vg~~~~~~~~~~~~g~ 176 (488)
T cd00216 106 AYWDPRKVFFGTFD-------GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPT-IVKKLVI-IGSSGAEFFACGVRGA 176 (488)
T ss_pred EEccCCeEEEecCC-------CeEEEEECCCCCEeeeecCCCCcCcceEecCCCE-EECCEEE-EeccccccccCCCCcE
Confidence 4445 778875431 23899999876678985321110 0001122223 3355555 4432211 12457
Q ss_pred EEEEECCCCCCEEEEcCCCCCC-CCCc--------------cceEEEE--cCCEEEEEcCcCC-----------CCceec
Q 048754 386 VFVLDLDAKQPTWIEVSGGAPP-LPRS--------------WHSSCII--EGSKLVVSGGCTD-----------AGVLLS 437 (625)
Q Consensus 386 ~~~~d~~t~~~~W~~~~~~~~p-~~r~--------------~~~~~~~--~~~~iyv~GG~~~-----------~~~~~~ 437 (625)
++.+|..|++..|+.-.....+ ..+. -.+...+ .++.+|+-.|-.. .+...+
T Consensus 177 v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~ 256 (488)
T cd00216 177 LRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTD 256 (488)
T ss_pred EEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCcee
Confidence 8999999998899843321101 0000 0111233 2456666533210 112345
Q ss_pred eEEEEecCCCCCceEEcCCCC-CCCCCCcceEEE-----ECCc--EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeE
Q 048754 438 DTYLLDLTTDKPMWREIPTSW-SPPSRLGHSLSV-----YGRT--KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQ 509 (625)
Q Consensus 438 ~~~~~d~~~~~~~W~~~~~~~-~p~~r~~~~~~~-----~~~~--~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~ 509 (625)
.++.+|+++.+..|+.-.... ....+.....++ +++. .++++|.. ...++.+|..+....|+.
T Consensus 257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~---------~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPK---------NGFFYVLDRTTGKLISAR 327 (488)
T ss_pred eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECC---------CceEEEEECCCCcEeeEe
Confidence 799999999999998643210 000011111111 1221 23444433 257899999987778985
Q ss_pred eeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCC-----------CCCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 510 LECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSI-----------AGLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 510 ~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~-----------~~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
-.... +. ....+.+|+-.... ........++.+|..+.+..|+.-.
T Consensus 328 ~~~~~-----------~~--------~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~ 384 (488)
T cd00216 328 PEVEQ-----------PM--------AYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKRE 384 (488)
T ss_pred Eeecc-----------cc--------ccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeC
Confidence 43210 00 01124455532111 0112245799999977788898754
No 108
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=95.73 E-value=0.015 Score=60.33 Aligned_cols=97 Identities=20% Similarity=0.256 Sum_probs=76.0
Q ss_pred CCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEEEEeecCcceeEE
Q 048754 65 PDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNR 144 (625)
Q Consensus 65 ~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~ 144 (625)
.+.+|+++.+.+..++||+++|++|+++.++. |+.+...+.....+.+.+|+..++-+|+..|+|...|+.
T Consensus 282 ~DmkityCedRisdlm~y~PeeLvGrS~Ye~~---------Ha~Ds~~v~KSh~dL~~KGQv~TgyYR~lak~GGyvWlQ 352 (768)
T KOG3558|consen 282 LDMKITYCEDRISDLMDYEPEELVGRSCYEFV---------HALDSDRVRKSHHDLLTKGQVVTGYYRLLAKNGGYVWLQ 352 (768)
T ss_pred cceeEEEEchhHHHHhcCCHHHhhchhHHHhh---------hHhhhhHHHHHHHHHHhcCccchhHHHHHHhcCCeEEEE
Confidence 37899999999999999999999999999985 556666666677778889999999999999999999999
Q ss_pred EEEEEeeCC-CCCEEEEEEEEEeeecc
Q 048754 145 LRLAPIRDD-DGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 145 ~~~~~~~d~-~g~~~~~i~~~~Dit~~ 170 (625)
..++.+... +++...+|++---+...
T Consensus 353 TqATVi~~tkn~q~q~IicVnYVlS~~ 379 (768)
T KOG3558|consen 353 TQATVIYNTKNPQEQNIICVNYVLSNI 379 (768)
T ss_pred eeeEEEecCCCCCcceEEEEEeeeccc
Confidence 988777543 23334455544344443
No 109
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=95.61 E-value=0.012 Score=60.71 Aligned_cols=103 Identities=11% Similarity=-0.015 Sum_probs=66.7
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
...|++..|. +|+|..+|++.++|+|.+.++++|.+...+.+ ...+.+...-..++.......
T Consensus 379 vtaGVi~~d~---~g~i~t~N~~ae~~l~~~~~~~~G~~lsa~ap--------------~~~~vf~~~~a~~~~~~~~ev 441 (712)
T COG5000 379 LTAGVIGFDN---RGCITTVNPSAEQILGKPFDQLLGQSLSAIAP--------------ELEEVFAEAGAAARTDKRVEV 441 (712)
T ss_pred CceeEEEEcC---CCeeEeecchHHHHhcCChhHhhcchhhhhhh--------------HHHHHHHHhhhhcCCCcccee
Confidence 7889999999 99999999999999999999999998665532 111122221122222222223
Q ss_pred EEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccC
Q 048754 133 NFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLN 174 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e 174 (625)
..-+.|+...+.+..+-...+ .-.+++.++.|||+...++
T Consensus 442 ~~~r~g~~rtl~Vq~t~~~~d--~~~gyVvt~DDITdLV~AQ 481 (712)
T COG5000 442 KLAREGEERTLNVQATREPED--NGNGYVVTFDDITDLVIAQ 481 (712)
T ss_pred ecccCCCceeeeeeeeecccc--cCCceEEEecchHHHHHHH
Confidence 334456666666655543322 2246788999999887553
No 110
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=95.60 E-value=0.0079 Score=61.41 Aligned_cols=107 Identities=19% Similarity=0.219 Sum_probs=75.9
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCch--hhcCCCCcccccCCcccccCCCCCChHHHHHHHHHH
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRAD--EVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCL 121 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~--e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (625)
+++.+.. ..+|++.+|. .|.|..+|.++++|+|+... +.+|++..++..|+ . .+...+
T Consensus 217 r~A~l~s--i~EGviAvd~---~G~It~~N~~A~~ll~~~~~~~~~ig~~i~~v~~p~---------~------~l~~vl 276 (537)
T COG3290 217 RQAMLQS--IKEGVIAVDK---KGVITLINQAAQKLLGLRQPSGDPIGRSIVEVLPPD---------S------DLPEVL 276 (537)
T ss_pred HHHHHHH--hhceEEEECC---CCeEeehhHHHHHHhcccCcCcccccccceEeeccc---------c------CcHHHH
Confidence 3444444 8899999999 99999999999999999766 68898888776532 1 122334
Q ss_pred HhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 122 EEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 122 ~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+.+.+...+. .+-+|. ++.+...|+.. +++++|.+.++||-|+-+++.+
T Consensus 277 ~~~~~~~~~e--~~~ng~--~~i~nr~pI~~-~~~~~GaI~tFRdktei~~L~e 325 (537)
T COG3290 277 ETGKPQHDEE--IRINGR--LLVANRVPIRS-GGQIVGAIITFRDKTEIKKLTE 325 (537)
T ss_pred hcCCcccchh--hhcCCe--EEEEEeccEEE-CCEEeEEEEEEecHHHHHHHHH
Confidence 4454433322 122344 45677788874 6789999999999999887654
No 111
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=95.54 E-value=0.0099 Score=40.02 Aligned_cols=45 Identities=33% Similarity=0.563 Sum_probs=37.8
Q ss_pred cccCchhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHhhhh
Q 048754 212 ILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVC 257 (625)
Q Consensus 212 ~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (625)
+..+|+|++ ..++..+++.++..+..+|++|+..+.+...|+..+
T Consensus 3 ~~~LP~~il-~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEIL-QEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHH-HHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHH-HHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 567899999 999999999999999999999999999999887653
No 112
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.
Probab=95.43 E-value=0.012 Score=42.53 Aligned_cols=41 Identities=34% Similarity=0.535 Sum_probs=29.7
Q ss_pred cccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCccc
Q 048754 46 GLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFL 95 (625)
Q Consensus 46 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l 95 (625)
.+++. ++++|+++| +++|+++|+++++++||+ ..|+....+
T Consensus 5 ~l~~~--~~~~i~i~d----~~~i~~~N~~~~~l~g~~---~~~~~~~~~ 45 (64)
T PF13188_consen 5 SLFDN--SPDGILIID----GGRIIYVNPAFEELFGYS---LEGEDIGQL 45 (64)
T ss_dssp HHHCC--SSSEEEEEE----TSBEEEE-HHHHHHHCS----HTCCCHHCT
T ss_pred HHHHc--CccceEEEE----CCChHHhhHHHHHHhCCC---CCCCCHHHh
Confidence 44445 999999998 348999999999999998 555554333
No 113
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=95.33 E-value=0.022 Score=36.69 Aligned_cols=39 Identities=38% Similarity=0.618 Sum_probs=35.3
Q ss_pred CchhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHh
Q 048754 215 LSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRK 254 (625)
Q Consensus 215 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (625)
+|+|++ ..++..+++.++..+..+|++|+..+.+...|+
T Consensus 1 lP~~ll-~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEIL-EEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 467787 789999999999999999999999999998875
No 114
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.29 E-value=0.74 Score=46.19 Aligned_cols=128 Identities=18% Similarity=0.229 Sum_probs=73.8
Q ss_pred eEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCce------
Q 048754 362 TLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVL------ 435 (625)
Q Consensus 362 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~------ 435 (625)
.++.+.+++|+..+.. ..+.+||..|. .-...+.+ +.+...-.++.+ +++||+..........
T Consensus 70 ~F~al~gskIv~~d~~------~~t~vyDt~t~--av~~~P~l--~~pk~~pisv~V-G~~LY~m~~~~~~~~~~~~~~~ 138 (342)
T PF07893_consen 70 DFFALHGSKIVAVDQS------GRTLVYDTDTR--AVATGPRL--HSPKRCPISVSV-GDKLYAMDRSPFPEPAGRPDFP 138 (342)
T ss_pred EEEEecCCeEEEEcCC------CCeEEEECCCC--eEeccCCC--CCCCcceEEEEe-CCeEEEeeccCccccccCccce
Confidence 3444457889988764 34889999988 55555554 333333455566 5679999775433211
Q ss_pred eceEEEEe------cCCCCCceEEcCCCCCCCCCC-------cceEEEECCcEEEEE-cCCcCCCCcccccCceEEEEcC
Q 048754 436 LSDTYLLD------LTTDKPMWREIPTSWSPPSRL-------GHSLSVYGRTKVLMF-GGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 436 ~~~~~~~d------~~~~~~~W~~~~~~~~p~~r~-------~~~~~~~~~~~l~v~-GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
.-++..|+ .....+.|..++.+ |.... -.+-+++++..|+|. -|.. .-.|.||..
T Consensus 139 ~FE~l~~~~~~~~~~~~~~w~W~~LP~P--Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~---------~GTysfDt~ 207 (342)
T PF07893_consen 139 CFEALVYRPPPDDPSPEESWSWRSLPPP--PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR---------WGTYSFDTE 207 (342)
T ss_pred eEEEeccccccccccCCCcceEEcCCCC--CccccCCcccceEEEEEEecCCeEEEEecCCc---------eEEEEEEcC
Confidence 22233344 23456778888752 32221 123334445578773 2211 246789988
Q ss_pred CCCCceeEeeec
Q 048754 502 DEEPQWKQLECN 513 (625)
Q Consensus 502 ~~~~~W~~~~~~ 513 (625)
+.+|+++..-
T Consensus 208 --~~~W~~~GdW 217 (342)
T PF07893_consen 208 --SHEWRKHGDW 217 (342)
T ss_pred --Ccceeeccce
Confidence 6699998553
No 115
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=95.14 E-value=0.0092 Score=48.77 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=36.3
Q ss_pred ccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhh
Q 048754 190 DQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 190 ~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~ 234 (625)
.....++|.++.++++|+++++++|++ ++++|.++.+++++++..
T Consensus 11 ~~~i~~~d~~g~I~~~N~a~~~l~g~~~~~~~g~~~~~~~~~~~~~ 56 (113)
T PF00989_consen 11 PDGIFVIDEDGRILYVNQAAEELLGYSREELIGKSLFDLIHPEDRR 56 (113)
T ss_dssp SSEEEEEETTSBEEEECHHHHHHHSS-HHHHTTSBGGGGCSGGGHH
T ss_pred CceEEEEeCcCeEEEECHHHHHHHccCHHHHcCCcHHHhcCchhhH
Confidence 333445587888889999999999999 999999999999987644
No 116
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.97 E-value=3.9 Score=39.90 Aligned_cols=247 Identities=16% Similarity=0.250 Sum_probs=104.7
Q ss_pred ccCeeEEeeecCCCCCCCcccceEEE-CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEc
Q 048754 289 EAVCWRKFTVRGAVEPSRCNFSACAA-GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLN 367 (625)
Q Consensus 289 ~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 367 (625)
....|+.+.. |....-...... .+.-|++|-. -.+|-......+|..+...........+..+.+.
T Consensus 4 ~~~~W~~v~l----~t~~~l~dV~F~d~~~G~~VG~~---------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~ 70 (302)
T PF14870_consen 4 SGNSWQQVSL----PTDKPLLDVAFVDPNHGWAVGAY---------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFD 70 (302)
T ss_dssp SS--EEEEE-----S-SS-EEEEEESSSS-EEEEETT---------TEEEEESSTTSS-EE-----S-----EEEEEEEE
T ss_pred cCCCcEEeec----CCCCceEEEEEecCCEEEEEecC---------CEEEEECCCCccccccccCCCccceeeEEEEEec
Confidence 3568999873 322222333333 4678888753 1234444444689987533222213334444455
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
++..|++|..+ + ++-...+-.+|++++... +.+-..+....+.++.++++|.. ..+|. -...
T Consensus 71 ~~~g~ivG~~g-------~-ll~T~DgG~tW~~v~l~~-~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~--T~Dg 132 (302)
T PF14870_consen 71 GNEGWIVGEPG-------L-LLHTTDGGKTWERVPLSS-KLPGSPFGITALGDGSAELAGDR-------GAIYR--TTDG 132 (302)
T ss_dssp TTEEEEEEETT-------E-EEEESSTTSS-EE----T-T-SS-EEEEEEEETTEEEEEETT---------EEE--ESST
T ss_pred CCceEEEcCCc-------e-EEEecCCCCCcEEeecCC-CCCCCeeEEEEcCCCcEEEEcCC-------CcEEE--eCCC
Confidence 67899887421 2 233322333899986321 22333345556667778877642 13333 2245
Q ss_pred CCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceE-EEEcCCCCCceeEeeeccccCcCCCCCCCC
Q 048754 448 KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESY-TIDLGDEEPQWKQLECNAFTGVGSQSAVVP 526 (625)
Q Consensus 448 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~-~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p 526 (625)
...|+.+... ....-.......++++++++.. ..++ ..|+- ...|......
T Consensus 133 G~tW~~~~~~---~~gs~~~~~r~~dG~~vavs~~----------G~~~~s~~~G--~~~w~~~~r~------------- 184 (302)
T PF14870_consen 133 GKTWQAVVSE---TSGSINDITRSSDGRYVAVSSR----------GNFYSSWDPG--QTTWQPHNRN------------- 184 (302)
T ss_dssp TSSEEEEE-S-------EEEEEE-TTS-EEEEETT----------SSEEEEE-TT---SS-EEEE---------------
T ss_pred CCCeeEcccC---CcceeEeEEECCCCcEEEEECc----------ccEEEEecCC--CccceEEccC-------------
Confidence 5569987642 1111222334456576666543 3443 34554 4579888753
Q ss_pred CCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceE-EEECCcEEEEEcCcC
Q 048754 527 PPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHST-CVVGGTRVLVLGGHT 603 (625)
Q Consensus 527 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~-~~~~~~~i~i~GG~~ 603 (625)
..|.-.++....++.|+++. . -..+..=+......+|.+... +.+...++.-- +..+++.+++.||..
T Consensus 185 ~~~riq~~gf~~~~~lw~~~-~------Gg~~~~s~~~~~~~~w~~~~~--~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLA-R------GGQIQFSDDPDDGETWSEPII--PIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEE-T------TTEEEEEE-TTEEEEE---B---TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ccceehhceecCCCCEEEEe-C------CcEEEEccCCCCccccccccC--CcccCceeeEEEEecCCCCEEEEeCCc
Confidence 34444455555578888874 1 113444441114567877432 22233343333 333468999999864
No 117
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.65 E-value=7.5 Score=41.65 Aligned_cols=187 Identities=10% Similarity=0.053 Sum_probs=99.5
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCC-CCCC-----ccceeEEEEcCCEEEEEccCCCCCc
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKS-SPPG-----RWGHTLSSLNGSWLVVFGGCGRQGL 382 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-~p~~-----r~~~~~~~~~~~~iyv~GG~~~~~~ 382 (625)
.+.++.++.||+.... +.++++|..+-...|+.-.... ...+ ....+. ++.+++||+...
T Consensus 63 stPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~-av~~~~v~v~t~------ 128 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGV-ALYDGKVFFGTL------ 128 (527)
T ss_pred cCCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccc-eEECCEEEEEcC------
Confidence 4556779999986542 2389999887667898532111 0000 011122 334567776432
Q ss_pred cccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCC-
Q 048754 383 LNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPP- 461 (625)
Q Consensus 383 ~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~- 461 (625)
...++.+|..|++..|+.-............+-++. ++.+|+-..... ......++.||..+....|+.-..+..+.
T Consensus 129 dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~ 206 (527)
T TIGR03075 129 DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRYTVPGDMGY 206 (527)
T ss_pred CCEEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccc-cCCCcEEEEEECCCCceeEeccCcCCCccc
Confidence 135899999999889985432110111111223334 556666422111 11235788999999988897544311100
Q ss_pred -------------------CCCcc------eEEEEC--CcEEEEEcCCc----CCCC--cccccCceEEEEcCCCCCcee
Q 048754 462 -------------------SRLGH------SLSVYG--RTKVLMFGGLA----KSGH--LRLRSGESYTIDLGDEEPQWK 508 (625)
Q Consensus 462 -------------------~r~~~------~~~~~~--~~~l~v~GG~~----~~~~--~~~~~~~~~~~d~~~~~~~W~ 508 (625)
..+.+ ....++ .+.+|+--|.. .... -...++.+..+|+++....|.
T Consensus 207 ~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~ 286 (527)
T TIGR03075 207 LDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWH 286 (527)
T ss_pred ccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEe
Confidence 00111 111333 23566654541 1110 113367899999998888898
Q ss_pred Eee
Q 048754 509 QLE 511 (625)
Q Consensus 509 ~~~ 511 (625)
.-.
T Consensus 287 ~Q~ 289 (527)
T TIGR03075 287 YQT 289 (527)
T ss_pred eeC
Confidence 654
No 118
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=94.53 E-value=0.15 Score=53.30 Aligned_cols=169 Identities=14% Similarity=0.090 Sum_probs=92.2
Q ss_pred eeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceE------
Q 048754 55 TSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQ------ 128 (625)
Q Consensus 55 ~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 128 (625)
--|++++. +|.++|+++.....+|.+.=|+.|..+.++ .||.+..++.+++--...+.....
T Consensus 130 GFVm~l~~---dG~~lYiSEtVS~yLGLSQvELTG~SvFDf---------iHP~DheE~~eqL~l~~~~p~~~es~~~~t 197 (768)
T KOG3558|consen 130 GFVMALTQ---DGDFLYISETVSIYLGLSQVELTGSSVFDF---------IHPCDHEEIAEQLGLRLTTPEVKESTDTST 197 (768)
T ss_pred ceEEEEcc---CCCEEEEechhHhhhCccceeeecchhhhc---------cCccCHHHHHHHhccccCCCcccccccCcc
Confidence 34677888 999999999999999999999999998877 467676666555432222111000
Q ss_pred ---EEEEE---EeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeec---ccccCCcchhhhhhhhccc------cccc-
Q 048754 129 ---GELLN---FKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEA---KIDLNHVSYPVFKENCNQQ------YDQS- 192 (625)
Q Consensus 129 ---~e~~~---~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~---~~~~e~~~~~~~~~~~~~~------~~~~- 192 (625)
.-+|. +.+-|+...+..... +++.+.|-.+--+. -.-+--..+-+...-+... +.+.
T Consensus 198 eRsFflRMKsTLT~RGRtlnlKSa~y-------Kvlh~tgh~rv~~~~sh~s~~~g~~~Pl~~lV~~a~alp~ps~~Eip 270 (768)
T KOG3558|consen 198 ERSFFLRMKSTLTKRGRTLNLKSAGY-------KVLHCTGHLRVYNNPSHNSPLCGYKEPLLGLVALAEALPPPSYTEIP 270 (768)
T ss_pred ceeEEEEeeeeeccCCceeeeeccce-------eEEEEeeeeeeccCCCCCCcccCccccchheeeeeccCCCCcccccc
Confidence 00111 223333222222111 22222222210000 0000000000000000000 0111
Q ss_pred ----cccc--cCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhHHHH
Q 048754 193 ----AQYF--SGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVCRR 242 (625)
Q Consensus 193 ----~~~~--~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~~~ 242 (625)
..+. ..|.++.|.-+++..+.||. +|++|..+..++|+.|-..+....+.
T Consensus 271 L~~~~FvtRhs~DmkityCedRisdlm~y~PeeLvGrS~Ye~~Ha~Ds~~v~KSh~d 327 (768)
T KOG3558|consen 271 LDCHMFVTRHSLDMKITYCEDRISDLMDYEPEELVGRSCYEFVHALDSDRVRKSHHD 327 (768)
T ss_pred cCCceeEEeeecceeEEEEchhHHHHhcCCHHHhhchhHHHhhhHhhhhHHHHHHHH
Confidence 1111 45667779999999999999 99999999999999998887554443
No 119
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.50 E-value=6 Score=39.87 Aligned_cols=291 Identities=13% Similarity=0.092 Sum_probs=137.8
Q ss_pred ccceeeeecccCeeEEeeecCCCCCCCcccceEE--ECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCC
Q 048754 280 RLARELTTLEAVCWRKFTVRGAVEPSRCNFSACA--AGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPG 357 (625)
Q Consensus 280 ~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~ 357 (625)
.++...+|...+.+..+........| .+ ++. -++.||+..... .....+..|.+...+.+.+.+........
T Consensus 14 gI~~~~~d~~~g~l~~~~~~~~~~~P--s~-l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQTVAEGENP--SW-LAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESSSE--CC-EEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred cEEEEEEcCCCCCceEeeeecCCCCC--ce-EEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 34444456678888776632211111 11 222 366788886543 12334777777664356766632211111
Q ss_pred ccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcC-------CC---CCCCCCccceEEEE-cCCEEEEE
Q 048754 358 RWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVS-------GG---APPLPRSWHSSCII-EGSKLVVS 426 (625)
Q Consensus 358 r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~-------~~---~~p~~r~~~~~~~~-~~~~iyv~ 426 (625)
.-+|-+..-+++.+|+.- +. .+.+.+|++... ..-.... .. .....-.-|.+... +++.+|+.
T Consensus 88 ~p~~i~~~~~g~~l~van-y~----~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVAN-YG----GGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp CEEEEEECTTSSEEEEEE-TT----TTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred CcEEEEEecCCCEEEEEE-cc----CCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 222322222456677653 11 135777777653 1222110 01 01122334555555 44567774
Q ss_pred cCcCCCCceeceEEEEecCCCCCceEEcCCCCCC---CCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCC
Q 048754 427 GGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSP---PSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDE 503 (625)
Q Consensus 427 GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p---~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~ 503 (625)
.= -.+.+++|+++..+.+......-..| .|| |.+..-++..+|+.... .+.+.+|++...
T Consensus 162 dl------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR--h~~f~pdg~~~Yv~~e~---------s~~v~v~~~~~~ 224 (345)
T PF10282_consen 162 DL------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR--HLAFSPDGKYAYVVNEL---------SNTVSVFDYDPS 224 (345)
T ss_dssp ET------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE--EEEE-TTSSEEEEEETT---------TTEEEEEEEETT
T ss_pred ec------CCCEEEEEEEeCCCceEEEeeccccccCCCCc--EEEEcCCcCEEEEecCC---------CCcEEEEeeccc
Confidence 21 13678999987665334332110011 132 33333344589998654 367777776633
Q ss_pred CCceeEeeeccccCcCCCCCCCCCCccceEEEEec--CCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcC---CCC
Q 048754 504 EPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMP--CGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNV---PGQ 578 (625)
Q Consensus 504 ~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~---~~~ 578 (625)
...++.+....... .........+.+.+. +..||+.-.. .+.|.+|++...+...+.+.. .|.
T Consensus 225 ~g~~~~~~~~~~~~------~~~~~~~~~~~i~ispdg~~lyvsnr~------~~sI~vf~~d~~~g~l~~~~~~~~~G~ 292 (345)
T PF10282_consen 225 DGSLTEIQTISTLP------EGFTGENAPAEIAISPDGRFLYVSNRG------SNSISVFDLDPATGTLTLVQTVPTGGK 292 (345)
T ss_dssp TTEEEEEEEEESCE------TTSCSSSSEEEEEE-TTSSEEEEEECT------TTEEEEEEECTTTTTEEEEEEEEESSS
T ss_pred CCceeEEEEeeecc------ccccccCCceeEEEecCCCEEEEEecc------CCEEEEEEEecCCCceEEEEEEeCCCC
Confidence 44666655442100 001111133444443 4467876432 667888888424455555431 232
Q ss_pred CCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCCC
Q 048754 579 PPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQ 621 (625)
Q Consensus 579 ~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~~ 621 (625)
.| ..+.+..+++.+++++..+ +.|.+|+++..+
T Consensus 293 ~P-----r~~~~s~~g~~l~Va~~~s-----~~v~vf~~d~~t 325 (345)
T PF10282_consen 293 FP-----RHFAFSPDGRYLYVANQDS-----NTVSVFDIDPDT 325 (345)
T ss_dssp SE-----EEEEE-TTSSEEEEEETTT-----TEEEEEEEETTT
T ss_pred Cc-----cEEEEeCCCCEEEEEecCC-----CeEEEEEEeCCC
Confidence 22 2444455556555554333 557777776544
No 120
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.43 E-value=6.6 Score=40.04 Aligned_cols=215 Identities=15% Similarity=0.159 Sum_probs=112.8
Q ss_pred eEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEE
Q 048754 311 ACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLD 390 (625)
Q Consensus 311 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d 390 (625)
.+..++++|+...- ..++.+|..+-...|+..... ....-.+-....+++||+-...+ .++.||
T Consensus 64 ~~~~dg~v~~~~~~-------G~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~i~~g~~~g------~~y~ld 127 (370)
T COG1520 64 PADGDGTVYVGTRD-------GNIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGKIYVGSWDG------KLYALD 127 (370)
T ss_pred cEeeCCeEEEecCC-------CcEEEEeCCCCcEEecccCcC---cceeccCceEEeCCeEEEecccc------eEEEEE
Confidence 46778899997211 148999998854468754221 00111111112245666554422 689999
Q ss_pred CCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEE
Q 048754 391 LDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSV 470 (625)
Q Consensus 391 ~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~ 470 (625)
..+++..|..-... . ++.. +.++..+..+|+.- ....++.+|.++.+..|..-.... ...+...+..
T Consensus 128 ~~~G~~~W~~~~~~--~-~~~~-~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~- 194 (370)
T COG1520 128 ASTGTLVWSRNVGG--S-PYYA-SPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPA- 194 (370)
T ss_pred CCCCcEEEEEecCC--C-eEEe-cCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-cccccccCce-
Confidence 98888899966543 2 3332 23344354566532 124788999988888998543211 1222222222
Q ss_pred ECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCC
Q 048754 471 YGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIA 550 (625)
Q Consensus 471 ~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~ 550 (625)
+.++.+|+-... . ...++.+|+++.+..|..-..... +..... ....+.+..|++-||.-
T Consensus 195 ~~~~~vy~~~~~--~------~~~~~a~~~~~G~~~w~~~~~~~~-------~~~~~~----~~~~~~~~~v~v~~~~~- 254 (370)
T COG1520 195 IASGTVYVGSDG--Y------DGILYALNAEDGTLKWSQKVSQTI-------GRTAIS----TTPAVDGGPVYVDGGVY- 254 (370)
T ss_pred eecceEEEecCC--C------cceEEEEEccCCcEeeeeeeeccc-------Cccccc----ccccccCceEEECCcEE-
Confidence 444356554221 0 137899999877888985332210 000000 01112133444443311
Q ss_pred CCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 551 GLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 551 ~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
.......++++|..+.+..|+.-.
T Consensus 255 ~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 255 AGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred EEecCCeEEEEEcCCCceEEEEec
Confidence 011134588888866677887664
No 121
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.38 E-value=3.9 Score=37.22 Aligned_cols=157 Identities=16% Similarity=0.148 Sum_probs=76.0
Q ss_pred eEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccC--CCCCCccceeEEEEcCCEEEEEccCCCCCccccEEE
Q 048754 311 ACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVK--SSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFV 388 (625)
Q Consensus 311 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 388 (625)
++...+.+|+|-|. .+|+++.......-..|... +.| .....+...-.++++|+|-| +..|+
T Consensus 12 ~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p-~~IDAa~~~~~~~~~yfFkg-------~~yw~ 75 (194)
T cd00094 12 VTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLP-SPVDAAFERPDTGKIYFFKG-------DKYWV 75 (194)
T ss_pred EEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCC-CCccEEEEECCCCEEEEECC-------CEEEE
Confidence 34456889999773 16777653211122223211 112 12222222222368999977 36888
Q ss_pred EECCCCCCE-EEEcCC-CCCCCCCccceEEEEc-CCEEEEEcCcCCCCceeceEEEEecCCCCCc--e-EEcCCCCCCCC
Q 048754 389 LDLDAKQPT-WIEVSG-GAPPLPRSWHSSCIIE-GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPM--W-REIPTSWSPPS 462 (625)
Q Consensus 389 ~d~~t~~~~-W~~~~~-~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~--W-~~~~~~~~p~~ 462 (625)
|+..+.... -..+.. +.++.+..-.++.... ++++|+|.| +..|.||....+.. . ..+.......+
T Consensus 76 ~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p 147 (194)
T cd00094 76 YTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQKMDPGYPKLIETDFPGVP 147 (194)
T ss_pred EcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCccccCCCCcchhhcCCCcC
Confidence 886542001 112222 1111112223343443 568999988 46788886443310 0 01111111122
Q ss_pred CCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 463 RLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 463 r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
..-.++....++++|++-| +.+|+||..+
T Consensus 148 ~~idaa~~~~~~~~yfF~g-----------~~y~~~d~~~ 176 (194)
T cd00094 148 DKVDAAFRWLDGYYYFFKG-----------DQYWRFDPRS 176 (194)
T ss_pred CCcceeEEeCCCcEEEEEC-----------CEEEEEeCcc
Confidence 2223344455458999866 6889999873
No 122
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.32 E-value=6.7 Score=39.68 Aligned_cols=217 Identities=17% Similarity=0.148 Sum_probs=111.4
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
+++|+..|+... .+.+||..+ +.--+.+.....|..+. -....++.+++.|+-+. -+-.+|..+.
T Consensus 79 DG~LlaaGD~sG------~V~vfD~k~-r~iLR~~~ah~apv~~~---~f~~~d~t~l~s~sDd~-----v~k~~d~s~a 143 (487)
T KOG0310|consen 79 DGRLLAAGDESG------HVKVFDMKS-RVILRQLYAHQAPVHVT---KFSPQDNTMLVSGSDDK-----VVKYWDLSTA 143 (487)
T ss_pred CCeEEEccCCcC------cEEEecccc-HHHHHHHhhccCceeEE---EecccCCeEEEecCCCc-----eEEEEEcCCc
Confidence 688999998643 388999544 11222222222333332 22234678888887543 2344555555
Q ss_pred CCEEE-EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECC
Q 048754 395 QPTWI-EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGR 473 (625)
Q Consensus 395 ~~~W~-~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 473 (625)
.-+ .+.+ ....-|.+ ++.-.++.|++.||++. .+-.||..+.+ .|..--+.+.|.. .++.+.+
T Consensus 144 --~v~~~l~~-htDYVR~g--~~~~~~~hivvtGsYDg------~vrl~DtR~~~-~~v~elnhg~pVe----~vl~lps 207 (487)
T KOG0310|consen 144 --YVQAELSG-HTDYVRCG--DISPANDHIVVTGSYDG------KVRLWDTRSLT-SRVVELNHGCPVE----SVLALPS 207 (487)
T ss_pred --EEEEEecC-CcceeEee--ccccCCCeEEEecCCCc------eEEEEEeccCC-ceeEEecCCCcee----eEEEcCC
Confidence 211 2222 11223332 12223457999999753 56777865543 3543222334433 2444554
Q ss_pred cE-EEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccce-----EEEEecCCEEEEEec
Q 048754 474 TK-VLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDH-----VAVSMPCGRIIIFGG 547 (625)
Q Consensus 474 ~~-l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~-----~~~~~~~~~l~v~GG 547 (625)
+. |...|| +.+.++|+.++.. . +..+.+| +.....++.=++.||
T Consensus 208 gs~iasAgG-----------n~vkVWDl~~G~q---l----------------l~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 208 GSLIASAGG-----------NSVKVWDLTTGGQ---L----------------LTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred CCEEEEcCC-----------CeEEEEEecCCce---e----------------hhhhhcccceEEEEEeecCCceEeecc
Confidence 34 444444 6777888764211 1 1112212 233333456677777
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCC
Q 048754 548 SIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGE 605 (625)
Q Consensus 548 ~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~ 605 (625)
.+ ..+-+||++ .|+.+..- ..|.+- -++.+.++++.+++|+.++-
T Consensus 258 LD------~~VKVfd~t----~~Kvv~s~-~~~~pv--Lsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 258 LD------RHVKVFDTT----NYKVVHSW-KYPGPV--LSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred cc------cceEEEEcc----ceEEEEee-ecccce--eeEEecCCCceEEEecccce
Confidence 64 366788863 56666421 122221 35666677899999987764
No 123
>smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain). PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold.
Probab=94.20 E-value=0.31 Score=29.43 Aligned_cols=40 Identities=33% Similarity=0.427 Sum_probs=32.9
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeec
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEA 169 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~ 169 (625)
+......+|...|+.....++.+..+.+.+++++.+|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ 42 (43)
T smart00086 3 EYRLRRKDGSYIWVLVSASPIRDEDGEVEGILGVVRDITE 42 (43)
T ss_pred EEEEEecCCCEEEEEEEeEEEECCCCCEEEEEEEEEeccC
Confidence 3455677888888888888888888888899999999985
No 124
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=94.14 E-value=0.096 Score=56.80 Aligned_cols=99 Identities=14% Similarity=0.079 Sum_probs=64.8
Q ss_pred CCCeeEEEecCCCCCCCEEEEehHHHHHhCCCc--hhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRA--DEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 52 ~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~--~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
...++++++|. +|+|+.+|+++++++|++. ++++|++..++..+. ... ....... . .
T Consensus 230 ~~~egii~~D~---~g~I~~~N~~a~~ll~~~~~~~~~~g~~~~~~~~~~------------~~~---~~~~~~~-~-~- 288 (545)
T PRK15053 230 SVYEGLIAVDP---HGYITAINRNARKMLGLSSPGRQWLGKPIAEVVRPA------------DFF---TEQIDEK-R-Q- 288 (545)
T ss_pred HhCceEEEECC---CCeEEeecHHHHHHhCCCCcchhhcCCcHHHhCCCc------------hhh---hhhcCCc-c-c-
Confidence 37899999999 9999999999999999965 468998877664311 111 0111111 0 1
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+ .....+|. .+.+...|+.. ++.+.+.+.+.+|+|+.+++++
T Consensus 289 ~-~~~~~~~~--~~~~~~~~i~~-~~~~~G~v~~~~d~te~~~l~~ 330 (545)
T PRK15053 289 D-VVANFNGL--SVIANREAIRS-GDDLLGAIISFRSKDEISTLNA 330 (545)
T ss_pred c-eEEEECCE--EEEEEeeeEEE-CCeEEEEEEEEEchHHHHHHHH
Confidence 1 11222443 34456677764 5667899999999998876544
No 125
>PRK13684 Ycf48-like protein; Provisional
Probab=93.74 E-value=8.3 Score=38.63 Aligned_cols=244 Identities=11% Similarity=0.158 Sum_probs=112.9
Q ss_pred ccCeeEEeeecCCCCCCCcccceEEEC-CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEc
Q 048754 289 EAVCWRKFTVRGAVEPSRCNFSACAAG-NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLN 367 (625)
Q Consensus 289 ~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 367 (625)
....|+... .|....-...+..+ +..|+.|-. -.++.......+|+++... .|..........+.
T Consensus 33 ~~~~W~~~~----~~~~~~l~~v~F~d~~~g~avG~~---------G~il~T~DgG~tW~~~~~~-~~~~~~~l~~v~~~ 98 (334)
T PRK13684 33 SSSPWQVID----LPTEANLLDIAFTDPNHGWLVGSN---------RTLLETNDGGETWEERSLD-LPEENFRLISISFK 98 (334)
T ss_pred cCCCcEEEe----cCCCCceEEEEEeCCCcEEEEECC---------CEEEEEcCCCCCceECccC-CcccccceeeeEEc
Confidence 456798885 23322333333333 466766632 1234333334689987432 22222212222233
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCC-CCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGG-APPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
++..++.|.. .-++ -....-.+|+++... ..|.. ......+.++.+++.|.. ..++.-+ .
T Consensus 99 ~~~~~~~G~~------g~i~--~S~DgG~tW~~~~~~~~~~~~--~~~i~~~~~~~~~~~g~~-------G~i~~S~--D 159 (334)
T PRK13684 99 GDEGWIVGQP------SLLL--HTTDGGKNWTRIPLSEKLPGS--PYLITALGPGTAEMATNV-------GAIYRTT--D 159 (334)
T ss_pred CCcEEEeCCC------ceEE--EECCCCCCCeEccCCcCCCCC--ceEEEEECCCcceeeecc-------ceEEEEC--C
Confidence 4456666532 1233 332222389988642 12221 122334444456665531 1233322 3
Q ss_pred CCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCC
Q 048754 447 DKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVP 526 (625)
Q Consensus 447 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p 526 (625)
...+|+.+... ..-..+.+....++.++++|.. ..++.- ......+|+.+.. +
T Consensus 160 gG~tW~~~~~~---~~g~~~~i~~~~~g~~v~~g~~----------G~i~~s-~~~gg~tW~~~~~-------------~ 212 (334)
T PRK13684 160 GGKNWEALVED---AAGVVRNLRRSPDGKYVAVSSR----------GNFYST-WEPGQTAWTPHQR-------------N 212 (334)
T ss_pred CCCCceeCcCC---CcceEEEEEECCCCeEEEEeCC----------ceEEEE-cCCCCCeEEEeeC-------------C
Confidence 44569998742 2223344444555455555432 222222 1112458998853 2
Q ss_pred CCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCC-cceEEEECCcEEEEEcCc
Q 048754 527 PPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAW-GHSTCVVGGTRVLVLGGH 602 (625)
Q Consensus 527 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~-~~~~~~~~~~~i~i~GG~ 602 (625)
..+.-.++....++.++++|.. -..++...+.-.+|+.+..+. +.... -+++.+.+++.+++.|..
T Consensus 213 ~~~~l~~i~~~~~g~~~~vg~~--------G~~~~~s~d~G~sW~~~~~~~--~~~~~~l~~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 213 SSRRLQSMGFQPDGNLWMLARG--------GQIRFNDPDDLESWSKPIIPE--ITNGYGYLDLAYRTPGEIWAGGGN 279 (334)
T ss_pred CcccceeeeEcCCCCEEEEecC--------CEEEEccCCCCCccccccCCc--cccccceeeEEEcCCCCEEEEcCC
Confidence 3334445455557788888653 112342111346898764311 11112 233344445678877664
No 126
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=93.67 E-value=0.099 Score=62.65 Aligned_cols=33 Identities=18% Similarity=0.130 Sum_probs=29.1
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchh
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADE 86 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e 86 (625)
+..+++|+++|. +|+|+++|+++++++|++..+
T Consensus 583 ~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~ 615 (1197)
T PRK09959 583 DSLPNPTYVVNW---QGNVISHNSAFEHYFTADYYK 615 (1197)
T ss_pred hhCCCcEEEEcC---CCcEEEehHHHHHHhCccccc
Confidence 449999999999 999999999999999986543
No 127
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=93.61 E-value=0.079 Score=51.69 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=81.5
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
+.+.|.-|-.+|. ++++.+.|+. +++|-.++.. +|++...- ||-........+.+.+..|..-..
T Consensus 296 f~~lP~Ditfvdk---~diV~ffs~~-~rif~rt~sv-iGr~v~~c----------hpPksv~iv~ki~~~fksG~kd~~ 360 (409)
T COG2461 296 FKHLPVDITFVDK---NDIVRFFSGG-ERIFPRTPSV-IGRRVQLC----------HPPKSVHIVEKILKDFKSGEKDFA 360 (409)
T ss_pred HhhCCCceEEecc---cceEEecCCc-ceecccChHh-hCCcccCC----------CCCchHHHHHHHHHHhhcCCcchH
Confidence 3337766667788 9999999998 7888877765 68776544 233455677788888888887777
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+++.. .|. ..+.++..+++|++|.-.|.+-+.+|||..++++-
T Consensus 361 efw~~--~~~-~~i~i~Y~av~de~ge~~g~le~~qdi~~i~~l~g 403 (409)
T COG2461 361 EFWIN--MGD-KFIHIRYFAVKDEEGEYLGTLEVVQDITRIKELEG 403 (409)
T ss_pred HHhcc--CCC-ceEEEEEEEEEcCCCceeeeehhhhhhHHHHhccc
Confidence 77732 222 25678899999999999999999999999987754
No 128
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.61 E-value=12 Score=40.12 Aligned_cols=127 Identities=15% Similarity=0.131 Sum_probs=71.1
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCC-CCCC----ccceEEEEcCCEEEEEcCcCCCCceeceEE
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAP-PLPR----SWHSSCIIEGSKLVVSGGCTDAGVLLSDTY 440 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~-p~~r----~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 440 (625)
+.++.||+.... +.++.+|..|++..|+.-..... ..+. .....+.+.++++|+... ...++
T Consensus 67 v~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ 133 (527)
T TIGR03075 67 VVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLV 133 (527)
T ss_pred EECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEE
Confidence 446788886542 35899999999889985442110 0000 001122344667776321 13689
Q ss_pred EEecCCCCCceEEcCCCCCCC-CCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEee
Q 048754 441 LLDLTTDKPMWREIPTSWSPP-SRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLE 511 (625)
Q Consensus 441 ~~d~~~~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~ 511 (625)
.+|.++.+..|+.-... ... .....+.++.++ .+|+-......+. ...++.||.++....|+.-.
T Consensus 134 ALDa~TGk~~W~~~~~~-~~~~~~~tssP~v~~g-~Vivg~~~~~~~~----~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 134 ALDAKTGKVVWSKKNGD-YKAGYTITAAPLVVKG-KVITGISGGEFGV----RGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred EEECCCCCEEeeccccc-ccccccccCCcEEECC-EEEEeecccccCC----CcEEEEEECCCCceeEeccC
Confidence 99999999999864321 111 112223444554 6666422111111 35788899988777887543
No 129
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=93.46 E-value=3.5 Score=41.35 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=72.7
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCce-EEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEW-RRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W-~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
.-.+.+.+|++.. +..|.++.+.+.- ..+....-|.. +++.. +|...++++|.. .-+|.||..
T Consensus 224 ~~plllvaG~d~~------lrifqvDGk~N~~lqS~~l~~fPi~----~a~f~p~G~~~i~~s~rr-----ky~ysyDle 288 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT------LRIFQVDGKVNPKLQSIHLEKFPIQ----KAEFAPNGHSVIFTSGRR-----KYLYSYDLE 288 (514)
T ss_pred CCceEEEecCCCc------EEEEEecCccChhheeeeeccCccc----eeeecCCCceEEEecccc-----eEEEEeecc
Confidence 3458888887544 4555555432331 11111112221 22222 344477777753 248999999
Q ss_pred CCCCEEEEcCCCCCCCCCccceE-EEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE
Q 048754 393 AKQPTWIEVSGGAPPLPRSWHSS-CIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY 471 (625)
Q Consensus 393 t~~~~W~~~~~~~~p~~r~~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 471 (625)
+. +-.++..+..-..+.-+.. +..++ .++++-|.. .-++++...| ..|. ..-..+......+. .-
T Consensus 289 ~a--k~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~------G~I~lLhakT--~eli--~s~KieG~v~~~~f-sS 354 (514)
T KOG2055|consen 289 TA--KVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNN------GHIHLLHAKT--KELI--TSFKIEGVVSDFTF-SS 354 (514)
T ss_pred cc--ccccccCCCCcccchhheeEecCCC-CeEEEcccC------ceEEeehhhh--hhhh--heeeeccEEeeEEE-ec
Confidence 88 7777654322222222222 23334 466666632 2345555333 3352 11111111111122 22
Q ss_pred CCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 472 GRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 472 ~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
++..|++.||. .++|++|+..
T Consensus 355 dsk~l~~~~~~----------GeV~v~nl~~ 375 (514)
T KOG2055|consen 355 DSKELLASGGT----------GEVYVWNLRQ 375 (514)
T ss_pred CCcEEEEEcCC----------ceEEEEecCC
Confidence 33478888885 7999999984
No 130
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=93.46 E-value=9.1 Score=38.24 Aligned_cols=111 Identities=15% Similarity=0.001 Sum_probs=51.0
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.||+.+.. .+.+.+|++.. ..++..+.....+. ...+.+..-+++.+|+..- . .+.+.+|+++++
T Consensus 46 ~~~lyv~~~~------~~~i~~~~~~~-~g~l~~~~~~~~~~-~p~~i~~~~~g~~l~v~~~-~----~~~v~v~~~~~~ 112 (330)
T PRK11028 46 KRHLYVGVRP------EFRVLSYRIAD-DGALTFAAESPLPG-SPTHISTDHQGRFLFSASY-N----ANCVSVSPLDKD 112 (330)
T ss_pred CCEEEEEECC------CCcEEEEEECC-CCceEEeeeecCCC-CceEEEECCCCCEEEEEEc-C----CCeEEEEEECCC
Confidence 5567775442 13477788763 24565443211111 1122222224556666642 1 246777877643
Q ss_pred CCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
......+... +....-|.++.. +++.+|+..- ..+.+.+||+++
T Consensus 113 g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~~~ 157 (330)
T PRK11028 113 GIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFTLSD 157 (330)
T ss_pred CCCCCceeec--cCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEEECC
Confidence 1111112111 111223444333 4456666432 225788999865
No 131
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=93.46 E-value=1.3 Score=37.88 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=68.6
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
.+.+|+.-+. ..+-.++|.|.++.+|++++-+++.+.+...-.. |...+.....+.++..+|-.....-.
T Consensus 40 ap~ailsh~~-~~dP~f~yaN~aaL~l~e~~w~el~~lPsr~sae---------~~~r~er~~lL~~v~~qG~~~~y~Gi 109 (148)
T PF08670_consen 40 APFAILSHGT-KADPIFIYANQAALDLFETTWDELVGLPSRLSAE---------EPERKERQSLLAQVMQQGYIDNYSGI 109 (148)
T ss_pred CCCEEEEcCC-CCCCEEEehhHHHHHHhcCCHHHHhcCcHhhccC---------hhhHHHHHHHHHHHHHhCCccCCCeE
Confidence 6778877653 1255899999999999999999999987654432 12233444455555555543333445
Q ss_pred EEeecCcceeEEE-EEEEeeCCCCCEEEEEEEEEe
Q 048754 133 NFKKDGTPLVNRL-RLAPIRDDDGTVTHIIGIQIF 166 (625)
Q Consensus 133 ~~~~dG~~~~~~~-~~~~~~d~~g~~~~~i~~~~D 166 (625)
.+.+.|+.++++- .+=.+.|++|...+.-.++.+
T Consensus 110 Riss~Grrf~ie~a~vW~l~D~~g~~~GqAa~F~~ 144 (148)
T PF08670_consen 110 RISSTGRRFRIERATVWNLIDEDGNYCGQAAMFSN 144 (148)
T ss_pred EEcCCCCeEEEeceEEEEEEcCCCCEEEEEEEEee
Confidence 5677888877643 444577888988777665544
No 132
>TIGR02373 photo_yellow photoactive yellow protein. Members of this family are photoactive yellow protein, a cytosolic, 14-kDa light-sensing protein which has a 4-hydroxycinnamyl (p-coumaric acid) chromophore covalently linked to a Cys residue. The enzyme 4-coumarate--CoA ligase as described by TIGR02372 is required for its biosynthesis. The modified Cys is in a PAS (pfam00989) domain, frequently found in signal transducing proteins. Members are known in alpha and gamma Proteobacteria that include Rhodobacter capsulatus, Halorhodospira halophila, Rhodospirillum centenum, etc.
Probab=92.70 E-value=0.87 Score=37.16 Aligned_cols=62 Identities=23% Similarity=0.333 Sum_probs=46.8
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCC-cccccCCcccccCCCCCC-hHHHHHHHHHHHhC
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNC-RFLQYRDPRAQRRHPLVD-PVVVSEIRRCLEEG 124 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~-~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 124 (625)
.+..+-|++.+|. +|.|+..|.+-.++.|++++.++|++. .++. |-.+ +.+...+.+..+++
T Consensus 22 lD~lpFGvI~lD~---~G~V~~YN~aE~~~sg~~p~~vlGr~FF~eVA----------PC~~~~~f~gRF~~g~~~g 85 (124)
T TIGR02373 22 FDALPFGAIQLDG---SGVILRYNAAEGRITGRDPERVIGRNFFKEVA----------PCTDIPEFSGRFMEGVASG 85 (124)
T ss_pred hhcCCcceEEECC---CCEEEEEecchhhhcCCChhhhhchhhhhhcc----------cccCCHHHHHHHHhhhhcC
Confidence 4448999999999 999999999999999999999999974 3332 3333 33455565555544
No 133
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=92.50 E-value=7 Score=39.23 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=66.0
Q ss_pred ECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccc-----cEEE
Q 048754 314 AGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLN-----DVFV 388 (625)
Q Consensus 314 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~-----~~~~ 388 (625)
.+++|+..+.. ..+.+||..+. .-..+ +.++.+...-.+..+ +++||++.......... .++.
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~--av~~~--P~l~~pk~~pisv~V-G~~LY~m~~~~~~~~~~~~~~~~FE~ 142 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTR--AVATG--PRLHSPKRCPISVSV-GDKLYAMDRSPFPEPAGRPDFPCFEA 142 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCC--eEecc--CCCCCCCcceEEEEe-CCeEEEeeccCccccccCccceeEEE
Confidence 58899988765 22789998873 33322 333333333333445 56799998764322111 3334
Q ss_pred E--E------CCCCCCEEEEcCCCCCCCCCcc-------ceEEEEcCCEEEE-EcCcCCCCceeceEEEEecCCCCCceE
Q 048754 389 L--D------LDAKQPTWIEVSGGAPPLPRSW-------HSSCIIEGSKLVV-SGGCTDAGVLLSDTYLLDLTTDKPMWR 452 (625)
Q Consensus 389 ~--d------~~t~~~~W~~~~~~~~p~~r~~-------~~~~~~~~~~iyv-~GG~~~~~~~~~~~~~~d~~~~~~~W~ 452 (625)
+ + .....+.|..++.+ |-.+.. .+-++++|..|+| .-|.. .-.|.||..+ .+|+
T Consensus 143 l~~~~~~~~~~~~~~w~W~~LP~P--Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~--~~W~ 212 (342)
T PF07893_consen 143 LVYRPPPDDPSPEESWSWRSLPPP--PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTES--HEWR 212 (342)
T ss_pred eccccccccccCCCcceEEcCCCC--CccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCC--ccee
Confidence 3 4 22345578888753 333221 1222225778888 33211 2368889554 5599
Q ss_pred EcCC
Q 048754 453 EIPT 456 (625)
Q Consensus 453 ~~~~ 456 (625)
++..
T Consensus 213 ~~Gd 216 (342)
T PF07893_consen 213 KHGD 216 (342)
T ss_pred eccc
Confidence 9864
No 134
>KOG3753 consensus Circadian clock protein period [Signal transduction mechanisms]
Probab=92.38 E-value=0.37 Score=51.77 Aligned_cols=44 Identities=14% Similarity=0.250 Sum_probs=36.4
Q ss_pred cccccccccccCc-hhHHHHhhhcccCchhhhhHHhHHHHHHHhh
Q 048754 204 SQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVCRRIRQLT 247 (625)
Q Consensus 204 ~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (625)
+|-+++-.++||- .|++|..++.++|++|+..+....+.+....
T Consensus 345 hVDeaAVp~LGyLPqDLIG~sil~f~H~eDr~vm~q~H~~v~q~~ 389 (1114)
T KOG3753|consen 345 HVDEAAVPLLGYLPQDLIGTSILAFVHPEDRHVMVQIHQKVLQSG 389 (1114)
T ss_pred ecchhhhhhhccCchhhhccchhhhhcCCchHHHHHHHHHHHHhC
Confidence 8889999999997 9999999999999999877766665544443
No 135
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=92.05 E-value=14 Score=36.94 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=62.8
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCC----CCccccEEEEEC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGR----QGLLNDVFVLDL 391 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~----~~~~~~~~~~d~ 391 (625)
..+||.-...... .+.++++|..+ ++.+ ...+.....+....-+++.+|+.-.+.. ....+.+.+||+
T Consensus 13 ~~v~V~d~~~~~~--~~~v~ViD~~~----~~v~--g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~ 84 (352)
T TIGR02658 13 RRVYVLDPGHFAA--TTQVYTIDGEA----GRVL--GMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDP 84 (352)
T ss_pred CEEEEECCccccc--CceEEEEECCC----CEEE--EEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 4466665532211 26799999876 3333 1122222222233345778999977422 223567999999
Q ss_pred CCCCCEEEEcCCCCCCCCCc-----c-ceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 392 DAKQPTWIEVSGGAPPLPRS-----W-HSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 392 ~t~~~~W~~~~~~~~p~~r~-----~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
.|.+... +++.+ +.||+ - ..+..-+|+.+||.- -.+.+.+-+.|+.+..
T Consensus 85 ~t~~~~~-~i~~p--~~p~~~~~~~~~~~~ls~dgk~l~V~n-----~~p~~~V~VvD~~~~k 139 (352)
T TIGR02658 85 QTHLPIA-DIELP--EGPRFLVGTYPWMTSLTPDNKTLLFYQ-----FSPSPAVGVVDLEGKA 139 (352)
T ss_pred ccCcEEe-EEccC--CCchhhccCccceEEECCCCCEEEEec-----CCCCCEEEEEECCCCc
Confidence 9883222 34332 33342 1 223333566778742 1234678888876644
No 136
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=91.98 E-value=12 Score=37.84 Aligned_cols=148 Identities=11% Similarity=0.147 Sum_probs=74.5
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEE--EcCCCCCCCCCccceEEEEcCCE-EEEEcCcCCCCceeceEEEEe
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWI--EVSGGAPPLPRSWHSSCIIEGSK-LVVSGGCTDAGVLLSDTYLLD 443 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~--~~~~~~~p~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~d 443 (625)
...-+.+.+|.++. -.+|..|-.++. .-+ .+... |. .+++...++. .++++|.. .-+|.||
T Consensus 223 p~~plllvaG~d~~---lrifqvDGk~N~-~lqS~~l~~f--Pi----~~a~f~p~G~~~i~~s~rr------ky~ysyD 286 (514)
T KOG2055|consen 223 PTAPLLLVAGLDGT---LRIFQVDGKVNP-KLQSIHLEKF--PI----QKAEFAPNGHSVIFTSGRR------KYLYSYD 286 (514)
T ss_pred CCCceEEEecCCCc---EEEEEecCccCh-hheeeeeccC--cc----ceeeecCCCceEEEecccc------eEEEEee
Confidence 44568888887653 245666665552 111 12221 21 1233333334 77777732 3578999
Q ss_pred cCCCCCceEEcCCC-CCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCC
Q 048754 444 LTTDKPMWREIPTS-WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQS 522 (625)
Q Consensus 444 ~~~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~ 522 (625)
+.+.. -+++... +.+ .+.-+...+-.++.++++-|.. .-++.+... +..|..--.
T Consensus 287 le~ak--~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~---------G~I~lLhak--T~eli~s~K---------- 342 (514)
T KOG2055|consen 287 LETAK--VTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNN---------GHIHLLHAK--TKELITSFK---------- 342 (514)
T ss_pred ccccc--cccccCCCCcc-cchhheeEecCCCCeEEEcccC---------ceEEeehhh--hhhhhheee----------
Confidence 86655 6666532 222 2233333333333566666653 455566555 445532211
Q ss_pred CCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 523 AVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 523 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
...+....++...+..|++.|| ..+||++|+.
T Consensus 343 ---ieG~v~~~~fsSdsk~l~~~~~-------~GeV~v~nl~ 374 (514)
T KOG2055|consen 343 ---IEGVVSDFTFSSDSKELLASGG-------TGEVYVWNLR 374 (514)
T ss_pred ---eccEEeeEEEecCCcEEEEEcC-------CceEEEEecC
Confidence 1222222333332345667766 4599999993
No 137
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=91.45 E-value=11 Score=34.32 Aligned_cols=154 Identities=17% Similarity=0.173 Sum_probs=74.4
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcC-CEEEEEcCcCCCCceeceEEEEecCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEG-SKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
.+++|+|-| +.+|+++.......-..+...-+..+..-.++..... +++|+|-| +..|.|+..+
T Consensus 16 ~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg--------~~yw~~~~~~ 80 (194)
T cd00094 16 RGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKG--------DKYWVYTGKN 80 (194)
T ss_pred CCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECC--------CEEEEEcCcc
Confidence 368999977 3578887642211223333211111222233434433 68999977 3678887542
Q ss_pred CCCce-EEcCCCCCCC--CCCcceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCC
Q 048754 447 DKPMW-REIPTSWSPP--SRLGHSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQS 522 (625)
Q Consensus 447 ~~~~W-~~~~~~~~p~--~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~ 522 (625)
..... ..+..-+.|. ... -++.... ++++|++-| +..|+||... .+.. ...+.....
T Consensus 81 ~~~~~Pk~i~~~~~~~~~~~i-DAA~~~~~~~~~yfFkg-----------~~y~ry~~~~--~~v~--~~yP~~i~~--- 141 (194)
T cd00094 81 LEPGYPKPISDLGFPPTVKQI-DAALRWPDNGKTYFFKG-----------DKYWRYDEKT--QKMD--PGYPKLIET--- 141 (194)
T ss_pred cccCCCcchhhcCCCCCCCCc-cEEEEEcCCCEEEEEeC-----------CEEEEEeCCC--cccc--CCCCcchhh---
Confidence 11001 1121101221 112 2333343 569999977 6788898652 2211 000000000
Q ss_pred CCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 523 AVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 523 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
...-.+..-.+++...++++|.|-|. ..|+||.
T Consensus 142 ~w~g~p~~idaa~~~~~~~~yfF~g~--------~y~~~d~ 174 (194)
T cd00094 142 DFPGVPDKVDAAFRWLDGYYYFFKGD--------QYWRFDP 174 (194)
T ss_pred cCCCcCCCcceeEEeCCCcEEEEECC--------EEEEEeC
Confidence 00111222345555645889999664 7899998
No 138
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=91.35 E-value=0.085 Score=42.07 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=31.5
Q ss_pred cccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhh
Q 048754 195 YFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 195 ~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~ 234 (625)
+++.+..++++|+++++++|++ ++++|.++..++++++..
T Consensus 6 i~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~ 46 (104)
T PF13426_consen 6 ILDPDGRILYVNPAFERLFGYSREELIGKSISDFFPEEDRP 46 (104)
T ss_dssp EEETTSBEEEE-HHHHHHHTS-HHHHTTSBGGGGCSTTSCH
T ss_pred EECCcCcEEehhHHHHHHHCcCHHHHcCCCcccccCcccch
Confidence 4477777889999999999999 899988898888866533
No 139
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=91.17 E-value=0.095 Score=49.62 Aligned_cols=100 Identities=22% Similarity=0.457 Sum_probs=67.7
Q ss_pred ccccccccCchhHHHHhhhcccCc-----hhhhhHHhHHHHHHHhhcchhHHhhhhhhcccccccchhcccccccccccc
Q 048754 207 QDICGILQLSDEVLAHNILSRLTP-----RDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTKKLGWGRL 281 (625)
Q Consensus 207 ~~~~~~~g~~~e~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (625)
++...+.-+|+|++ ..++..+-+ .++.++..+||.|+..++++++|+.-|...|+... ..+
T Consensus 102 p~~~~~~~LPdEvL-m~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~-------------~~l 167 (366)
T KOG2997|consen 102 PELISISVLPDEVL-MRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSC-------------IKL 167 (366)
T ss_pred hhhhhhhhCCHHHH-HHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhh-------------hcc
Confidence 55555789999998 777766554 88999999999999999999999999999887764 111
Q ss_pred ceeee-ecccCeeEEeeecCCCCCCCcccceEEECCEEEEEccc
Q 048754 282 ARELT-TLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGE 324 (625)
Q Consensus 282 ~~~~~-~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~ 324 (625)
..... ......|+.+= .-.||.-+-.|.+...=|+=-|.
T Consensus 168 n~~~~~sky~~SWR~Mf----l~RpRvrFdG~YIS~~tYiR~G~ 207 (366)
T KOG2997|consen 168 NPKILQSKYYTSWREMF----LERPRVRFDGVYISKTTYIRQGE 207 (366)
T ss_pred chhhhhhHHHhHHHHHH----hhCcceeecceEEEEEeEeecCc
Confidence 11111 11245677542 33345555555555555665564
No 140
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=90.90 E-value=16 Score=35.28 Aligned_cols=233 Identities=15% Similarity=0.124 Sum_probs=107.4
Q ss_pred ccCeeEEeeecCCCC--CCCcccceEEE--CCEEEEEcccCCCCC--CCCCe-EEEeccCCCCceEEccc-CC---CCCC
Q 048754 289 EAVCWRKFTVRGAVE--PSRCNFSACAA--GNRLVLFGGEGVNMQ--PMDDT-FVLNLDAANPEWRRVSV-KS---SPPG 357 (625)
Q Consensus 289 ~~~~W~~~~~~~~~p--~~r~~~~~~~~--~~~lyv~GG~~~~~~--~~~~~-~~~~~~~~~~~W~~~~~-~~---~p~~ 357 (625)
.-.+|.........+ ..+.+..+.+. ++.|++|........ ....+ +....+ ...+|..... .. ....
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D-~G~TWs~~~~l~~~~~~~~~ 106 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTD-GGKTWSEPTDLPPGWFGNFS 106 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESS-TTSS-EEEEEEHHHCCCSCE
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECC-CCCCCCCcccccccccccee
Confidence 346798766433333 22333333332 788888863221111 11111 233333 2368987631 10 1111
Q ss_pred cccee-EEEEcCCEEEEEccCCC-CCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEE-EEcCCEEEEEcCcCCCCc
Q 048754 358 RWGHT-LSSLNGSWLVVFGGCGR-QGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSC-IIEGSKLVVSGGCTDAGV 434 (625)
Q Consensus 358 r~~~~-~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~-~~~~~~iyv~GG~~~~~~ 434 (625)
..... ...+.++.+++.. +.. .........+..+.+ .+|....... +.....+.+. ...++.++++--.. ...
T Consensus 107 ~~~~~~~i~~~~G~l~~~~-~~~~~~~~~~~~~~S~D~G-~tW~~~~~~~-~~~~~~e~~~~~~~dG~l~~~~R~~-~~~ 182 (275)
T PF13088_consen 107 GPGRGPPIQLPDGRLIAPY-YHESGGSFSAFVYYSDDGG-KTWSSGSPIP-DGQGECEPSIVELPDGRLLAVFRTE-GND 182 (275)
T ss_dssp ECSEEEEEEECTTEEEEEE-EEESSCEEEEEEEEESSTT-SSEEEEEECE-CSEEEEEEEEEEETTSEEEEEEEEC-SST
T ss_pred ccceeeeeEecCCCEEEEE-eeccccCcceEEEEeCCCC-ceeecccccc-ccCCcceeEEEECCCCcEEEEEEcc-CCC
Confidence 11222 1334456777762 111 111233444555544 3798765421 1223333333 34566788775432 111
Q ss_pred eeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeecc
Q 048754 435 LLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNA 514 (625)
Q Consensus 435 ~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~ 514 (625)
.++.+--.....+|+.......|.+.....++...++.++++.... ... ..+.++-...+..+|.......
T Consensus 183 ---~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~r-----~~l~l~~S~D~g~tW~~~~~i~ 253 (275)
T PF13088_consen 183 ---DIYISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNP-DGR-----SNLSLYVSEDGGKTWSRPKTID 253 (275)
T ss_dssp ---EEEEEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECS-STS-----EEEEEEEECTTCEEEEEEEEEE
T ss_pred ---cEEEEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECC-CCC-----CceEEEEEeCCCCcCCccEEEe
Confidence 3444433344557998643234555555555555666887776621 111 2333332333367999776652
Q ss_pred ccCcCCCCCCCC-CCccceEEEEecCCEEEE
Q 048754 515 FTGVGSQSAVVP-PPRLDHVAVSMPCGRIII 544 (625)
Q Consensus 515 ~~~~~~~~~~~p-~~r~~~~~~~~~~~~l~v 544 (625)
..+ ..-.+.+++...+++|+|
T Consensus 254 ---------~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 254 ---------DGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp ---------EEE-CCEEEEEEEEEETTEEEE
T ss_pred ---------CCCCCcEECCeeEEeCCCcCCC
Confidence 111 113455666666778886
No 141
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=90.70 E-value=23 Score=36.71 Aligned_cols=148 Identities=19% Similarity=0.209 Sum_probs=73.3
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR 463 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 463 (625)
..++++|+.++ ....+... +.... .....-+++.+++...... ..++|.+|+.+.. ...+..... ..
T Consensus 214 ~~i~v~d~~~g--~~~~~~~~--~~~~~-~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~--~~~l~~~~~--~~ 280 (417)
T TIGR02800 214 PEIYVQDLATG--QREKVASF--PGMNG-APAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQ--LTRLTNGPG--ID 280 (417)
T ss_pred cEEEEEECCCC--CEEEeecC--CCCcc-ceEECCCCCEEEEEECCCC----CccEEEEECCCCC--EEECCCCCC--CC
Confidence 57999999887 55554432 11111 1122224555665433211 2478999986654 666653211 11
Q ss_pred CcceEEEE-CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEE
Q 048754 464 LGHSLSVY-GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542 (625)
Q Consensus 464 ~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 542 (625)
...... ++..|++..... + ...+|.+|+. +..+..+... ...........+++.
T Consensus 281 --~~~~~s~dg~~l~~~s~~~--g-----~~~iy~~d~~--~~~~~~l~~~--------------~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 281 --TEPSWSPDGKSIAFTSDRG--G-----SPQIYMMDAD--GGEVRRLTFR--------------GGYNASPSWSPDGDL 335 (417)
T ss_pred --CCEEECCCCCEEEEEECCC--C-----CceEEEEECC--CCCEEEeecC--------------CCCccCeEECCCCCE
Confidence 111222 333454443221 1 2578999987 4466655432 111122223335666
Q ss_pred EEEecCCCCCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 543 IIFGGSIAGLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 543 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
+++..... ....++.+|+ .+..+..+.
T Consensus 336 i~~~~~~~---~~~~i~~~d~--~~~~~~~l~ 362 (417)
T TIGR02800 336 IAFVHREG---GGFNIAVMDL--DGGGERVLT 362 (417)
T ss_pred EEEEEccC---CceEEEEEeC--CCCCeEEcc
Confidence 66654432 2347999999 455555553
No 142
>PRK05137 tolB translocation protein TolB; Provisional
Probab=90.57 E-value=24 Score=36.84 Aligned_cols=232 Identities=20% Similarity=0.192 Sum_probs=104.8
Q ss_pred CCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCC
Q 048754 331 MDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPR 410 (625)
Q Consensus 331 ~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r 410 (625)
...+|++|.... .=+++.....+ ..+....-++++|+...-..+ ...+|++|+.++ ....+... +..
T Consensus 181 ~~~l~~~d~dg~--~~~~lt~~~~~---v~~p~wSpDG~~lay~s~~~g---~~~i~~~dl~~g--~~~~l~~~--~g~- 247 (435)
T PRK05137 181 IKRLAIMDQDGA--NVRYLTDGSSL---VLTPRFSPNRQEITYMSYANG---RPRVYLLDLETG--QRELVGNF--PGM- 247 (435)
T ss_pred ceEEEEECCCCC--CcEEEecCCCC---eEeeEECCCCCEEEEEEecCC---CCEEEEEECCCC--cEEEeecC--CCc-
Confidence 456888887652 22333211111 111111124555544432211 257999999888 66666543 211
Q ss_pred ccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc-EEEEEcCCcCCCCcc
Q 048754 411 SWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT-KVLMFGGLAKSGHLR 489 (625)
Q Consensus 411 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~ 489 (625)
.......-+++++++..... + ..++|.+|+.+.. ...+... +. .........++ .|+..... .+
T Consensus 248 ~~~~~~SPDG~~la~~~~~~--g--~~~Iy~~d~~~~~--~~~Lt~~--~~--~~~~~~~spDG~~i~f~s~~--~g--- 312 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLSQG--G--NTDIYTMDLRSGT--TTRLTDS--PA--IDTSPSYSPDGSQIVFESDR--SG--- 312 (435)
T ss_pred ccCcEECCCCCEEEEEEecC--C--CceEEEEECCCCc--eEEccCC--CC--ccCceeEcCCCCEEEEEECC--CC---
Confidence 11122223455555443221 1 2578999987655 5666532 11 11112222233 44433211 11
Q ss_pred cccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCC
Q 048754 490 LRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPS 569 (625)
Q Consensus 490 ~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~ 569 (625)
..++|++|++ +...+.+... ......... ..+++.+++.....+ ...++.+|+ ....
T Consensus 313 --~~~Iy~~d~~--g~~~~~lt~~-------------~~~~~~~~~-SpdG~~ia~~~~~~~---~~~i~~~d~--~~~~ 369 (435)
T PRK05137 313 --SPQLYVMNAD--GSNPRRISFG-------------GGRYSTPVW-SPRGDLIAFTKQGGG---QFSIGVMKP--DGSG 369 (435)
T ss_pred --CCeEEEEECC--CCCeEEeecC-------------CCcccCeEE-CCCCCEEEEEEcCCC---ceEEEEEEC--CCCc
Confidence 2578999987 3355555421 111112222 224444444332211 247889998 3444
Q ss_pred eEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccC
Q 048754 570 WRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 570 W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
...+.. +. . .......++++.+++-...........+|+++++.
T Consensus 370 ~~~lt~-~~----~-~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 370 ERILTS-GF----L-VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred eEeccC-CC----C-CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 444421 11 1 12233444556555544332211124688888754
No 143
>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=90.37 E-value=0.61 Score=31.51 Aligned_cols=41 Identities=32% Similarity=0.485 Sum_probs=35.3
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccc
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQ 96 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~ 96 (625)
.++++++++. ++.+..+|+.+.+++|++..++.+.....+.
T Consensus 10 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (67)
T smart00091 10 LPDGIFVLDL---DGRILYANPAAEELLGYSPEELIGKSLLELI 50 (67)
T ss_pred CCceEEEEcC---CCeEEEECHHHHHHhCCCHHHHcCCcHHHhc
Confidence 6788999998 9999999999999999999898887655553
No 144
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=90.09 E-value=19 Score=34.87 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=66.9
Q ss_pred EEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEE-EcCCEEEEEccCCCCCccccEEEEECCCCC
Q 048754 317 RLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSS-LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQ 395 (625)
Q Consensus 317 ~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~ 395 (625)
.+|+.++.+. .++++|+.+. +-...- .....++ +++. -+++.+|+.++.. +.+.+||..+.
T Consensus 2 ~~~~s~~~d~------~v~~~d~~t~--~~~~~~-~~~~~~~---~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~- 63 (300)
T TIGR03866 2 KAYVSNEKDN------TISVIDTATL--EVTRTF-PVGQRPR---GITLSKDGKLLYVCASDS-----DTIQVIDLATG- 63 (300)
T ss_pred cEEEEecCCC------EEEEEECCCC--ceEEEE-ECCCCCC---ceEECCCCCEEEEEECCC-----CeEEEEECCCC-
Confidence 4666665432 4888888762 322211 1111122 2222 2344677776532 35889998877
Q ss_pred CEEEE-cCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 396 PTWIE-VSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 396 ~~W~~-~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
.... ++.. +.+. .....-+++.+|+.++.. ..+.+||+.+... ...++. ....+++....++
T Consensus 64 -~~~~~~~~~--~~~~--~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~-~~~~~~-----~~~~~~~~~~~dg 126 (300)
T TIGR03866 64 -EVIGTLPSG--PDPE--LFALHPNGKILYIANEDD------NLVTVIDIETRKV-LAEIPV-----GVEPEGMAVSPDG 126 (300)
T ss_pred -cEEEeccCC--CCcc--EEEECCCCCEEEEEcCCC------CeEEEEECCCCeE-EeEeeC-----CCCcceEEECCCC
Confidence 4432 3221 1121 122222455566655421 3688899865431 122221 1111334444455
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
.+++++... ...++.+|..
T Consensus 127 ~~l~~~~~~--------~~~~~~~d~~ 145 (300)
T TIGR03866 127 KIVVNTSET--------TNMAHFIDTK 145 (300)
T ss_pred CEEEEEecC--------CCeEEEEeCC
Confidence 666665432 1345567776
No 145
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=89.85 E-value=0.39 Score=53.03 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=53.5
Q ss_pred EEEEEEEeeCCCCCEEEEEEEEEeeeccccc------------CC-----cchhhhhhh------hccccccccccccCC
Q 048754 143 NRLRLAPIRDDDGTVTHIIGIQIFSEAKIDL------------NH-----VSYPVFKEN------CNQQYDQSAQYFSGG 199 (625)
Q Consensus 143 ~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~------------e~-----~~~~~~~~~------~~~~~~~~~~~~~~~ 199 (625)
+.....|+.|.+|++++++.+..+....... |. ......+.. +.........++|.+
T Consensus 143 ~~c~aaPI~d~~G~liGvl~l~~~~~~~~~~~l~lv~~~a~~Ie~~l~~~~~~~~~~~~~~~~~~il~~~~~gVl~vD~~ 222 (638)
T PRK11388 143 WAFCATPVFDSKGRLTGTIALACPVEQTSAADLPLTLSIAREVGNLLLTDSLLAESNRHLNQLNALLESMDDGVIAWDEQ 222 (638)
T ss_pred ceEEeeEEEcCCCCEEEEEEEEecccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEECCC
Confidence 3567899999999999998876644321110 00 000000111 112223334455888
Q ss_pred CCCCcccccccccccCc-hhHHHHhhhcccC
Q 048754 200 HSPLSQHQDICGILQLS-DEVLAHNILSRLT 229 (625)
Q Consensus 200 ~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~ 229 (625)
+.++++|+++++++|++ ++++|..+.++++
T Consensus 223 G~I~~~N~aa~~llg~s~~~l~G~~i~~l~~ 253 (638)
T PRK11388 223 GNLQFLNAQAARLLRLDATASQGRAITELLT 253 (638)
T ss_pred CeEehhhHHHHHHhCcCHHHHCCCcHHHHhc
Confidence 88889999999999998 7788776666654
No 146
>PRK04043 tolB translocation protein TolB; Provisional
Probab=89.52 E-value=29 Score=36.06 Aligned_cols=185 Identities=15% Similarity=0.186 Sum_probs=94.3
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR 463 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 463 (625)
.++|++|+.++ .=..+... + .........-+++++++.-... + ..++|++|+++.. ++++... +.
T Consensus 213 ~~Iyv~dl~tg--~~~~lt~~--~-g~~~~~~~SPDG~~la~~~~~~--g--~~~Iy~~dl~~g~--~~~LT~~--~~-- 277 (419)
T PRK04043 213 PTLYKYNLYTG--KKEKIASS--Q-GMLVVSDVSKDGSKLLLTMAPK--G--QPDIYLYDTNTKT--LTQITNY--PG-- 277 (419)
T ss_pred CEEEEEECCCC--cEEEEecC--C-CcEEeeEECCCCCEEEEEEccC--C--CcEEEEEECCCCc--EEEcccC--CC--
Confidence 38999999887 55565432 1 1111122233565665543321 1 2589999987765 8888642 11
Q ss_pred CcceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEE
Q 048754 464 LGHSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542 (625)
Q Consensus 464 ~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 542 (625)
......... +++|+...... + ..++|++|++ +...+++...+ ... ..+.- +++.
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~--g-----~~~Iy~~dl~--~g~~~rlt~~g--------------~~~-~~~SP-DG~~ 332 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRL--G-----YPNIFMKKLN--SGSVEQVVFHG--------------KNN-SSVST-YKNY 332 (419)
T ss_pred ccCccEECCCCCEEEEEECCC--C-----CceEEEEECC--CCCeEeCccCC--------------CcC-ceECC-CCCE
Confidence 112222333 33666654331 1 3689999998 44555554321 011 22222 4443
Q ss_pred EEEecCCC-CCC--CCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccC
Q 048754 543 IIFGGSIA-GLH--SPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 543 ~v~GG~~~-~~~--~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
+++-.... ... ...+++.+|+ ++..+..+...+ . .......+|++.++|-...+. ...++.++++.
T Consensus 333 Ia~~~~~~~~~~~~~~~~I~v~d~--~~g~~~~LT~~~-----~-~~~p~~SPDG~~I~f~~~~~~---~~~L~~~~l~g 401 (419)
T PRK04043 333 IVYSSRETNNEFGKNTFNLYLIST--NSDYIRRLTANG-----V-NQFPRFSSDGGSIMFIKYLGN---QSALGIIRLNY 401 (419)
T ss_pred EEEEEcCCCcccCCCCcEEEEEEC--CCCCeEECCCCC-----C-cCCeEECCCCCEEEEEEccCC---cEEEEEEecCC
Confidence 33333221 111 2368999999 677887775421 1 122334445555555433322 24677776644
No 147
>PRK04792 tolB translocation protein TolB; Provisional
Probab=88.92 E-value=33 Score=36.01 Aligned_cols=148 Identities=17% Similarity=0.215 Sum_probs=74.7
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR 463 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 463 (625)
..+|++|+.++ .-..+... +.. .......-+++.+++..... + ..++|.+|+.+.. .+.+.... .
T Consensus 242 ~~L~~~dl~tg--~~~~lt~~--~g~-~~~~~wSPDG~~La~~~~~~--g--~~~Iy~~dl~tg~--~~~lt~~~---~- 306 (448)
T PRK04792 242 AEIFVQDIYTQ--VREKVTSF--PGI-NGAPRFSPDGKKLALVLSKD--G--QPEIYVVDIATKA--LTRITRHR---A- 306 (448)
T ss_pred cEEEEEECCCC--CeEEecCC--CCC-cCCeeECCCCCEEEEEEeCC--C--CeEEEEEECCCCC--eEECccCC---C-
Confidence 57999999887 55555532 211 11122223555565543221 1 2479999987655 77766421 1
Q ss_pred CcceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEE
Q 048754 464 LGHSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542 (625)
Q Consensus 464 ~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 542 (625)
.........++ .|++..... + ..++|.+|+. +.+++.+...+ ......++ ..+++.
T Consensus 307 ~~~~p~wSpDG~~I~f~s~~~--g-----~~~Iy~~dl~--~g~~~~Lt~~g-------------~~~~~~~~-SpDG~~ 363 (448)
T PRK04792 307 IDTEPSWHPDGKSLIFTSERG--G-----KPQIYRVNLA--SGKVSRLTFEG-------------EQNLGGSI-TPDGRS 363 (448)
T ss_pred CccceEECCCCCEEEEEECCC--C-----CceEEEEECC--CCCEEEEecCC-------------CCCcCeeE-CCCCCE
Confidence 11122232233 455443211 1 2589999988 45677764220 01111222 335544
Q ss_pred EEEecCCCCCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 543 IIFGGSIAGLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 543 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
+++.+... ....++.+|+ .+.....+.
T Consensus 364 l~~~~~~~---g~~~I~~~dl--~~g~~~~lt 390 (448)
T PRK04792 364 MIMVNRTN---GKFNIARQDL--ETGAMQVLT 390 (448)
T ss_pred EEEEEecC---CceEEEEEEC--CCCCeEEcc
Confidence 44433322 1347999999 566666554
No 148
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=88.25 E-value=24 Score=33.53 Aligned_cols=194 Identities=13% Similarity=0.086 Sum_probs=95.1
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCC---CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEec
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAK---QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDL 444 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~---~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~ 444 (625)
.+++|++.|..+. .++.|..... .......-. .|.+-.|...++++| .+|..-. .++.+..||+
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~--Lp~~~~GtG~vVYng-slYY~~~------~s~~IvkydL 96 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYK--LPYPWQGTGHVVYNG-SLYYNKY------NSRNIVKYDL 96 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEE--EeceeccCCeEEECC-cEEEEec------CCceEEEEEC
Confidence 4579999887554 4555543221 001111111 144445555556644 5555322 3468999999
Q ss_pred CCCCCc-eEEcCCCCC----CCCCCcceEE--EECCcEEEEEcCCcCCCCcccccCceEEEEcCC--CCCceeEeeeccc
Q 048754 445 TTDKPM-WREIPTSWS----PPSRLGHSLS--VYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD--EEPQWKQLECNAF 515 (625)
Q Consensus 445 ~~~~~~-W~~~~~~~~----p~~r~~~~~~--~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~--~~~~W~~~~~~~~ 515 (625)
.+.... +..++.... |....+++-+ +++.+-|+++=....+.. .--+-.+|+++ -..+|..-
T Consensus 97 ~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g----~ivvskld~~tL~v~~tw~T~----- 167 (250)
T PF02191_consen 97 TTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG----NIVVSKLDPETLSVEQTWNTS----- 167 (250)
T ss_pred cCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC----cEEEEeeCcccCceEEEEEec-----
Confidence 998877 777764321 1122222222 234445665544332221 01233455542 01245421
Q ss_pred cCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEEC--C
Q 048754 516 TGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVG--G 593 (625)
Q Consensus 516 ~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~--~ 593 (625)
.+.+..+.+-++ -|.||++-..+... ..-.+.||+. +++=..+.. ..+.+-..++++-.+ +
T Consensus 168 ---------~~k~~~~naFmv--CGvLY~~~s~~~~~--~~I~yafDt~--t~~~~~~~i--~f~~~~~~~~~l~YNP~d 230 (250)
T PF02191_consen 168 ---------YPKRSAGNAFMV--CGVLYATDSYDTRD--TEIFYAFDTY--TGKEEDVSI--PFPNPYGNISMLSYNPRD 230 (250)
T ss_pred ---------cCchhhcceeeE--eeEEEEEEECCCCC--cEEEEEEECC--CCceeceee--eeccccCceEeeeECCCC
Confidence 233334443333 47899886654322 3345789984 444444432 233333355666665 5
Q ss_pred cEEEEEc
Q 048754 594 TRVLVLG 600 (625)
Q Consensus 594 ~~i~i~G 600 (625)
++||++-
T Consensus 231 k~LY~wd 237 (250)
T PF02191_consen 231 KKLYAWD 237 (250)
T ss_pred CeEEEEE
Confidence 7888763
No 149
>PRK10060 RNase II stability modulator; Provisional
Probab=88.12 E-value=0.17 Score=56.19 Aligned_cols=94 Identities=11% Similarity=0.023 Sum_probs=54.8
Q ss_pred EeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCcchhhhhhhhccccccccccccCCCCCCcccccccccc
Q 048754 134 FKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYDQSAQYFSGGHSPLSQHQDICGIL 213 (625)
Q Consensus 134 ~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~ 213 (625)
.+.+|+..|+.....++.. ....+..+...|+++.++..... ..+.+.+.........++|.+..++++|+++++++
T Consensus 68 ~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~gI~i~D~~g~I~~~N~a~~~l~ 144 (663)
T PRK10060 68 LTLDGEPLSVHLVGRKINK--REWAGTASAWHDTPSVARDLSHG-LSFAEQVVSEANSVIVILDSRGNIQRFNRLCEEYT 144 (663)
T ss_pred EEeCCcEEEEEEeeeccCc--ccccchhhHHHHHHHHHHHHHHH-HHHHHHHHhhCCceEEEEeCCCCEEEEcHHHHHHH
Confidence 4458998888876665532 23344444445555532211100 01111122222333334577788889999999999
Q ss_pred cCc-hhHHHHhhhcccCc
Q 048754 214 QLS-DEVLAHNILSRLTP 230 (625)
Q Consensus 214 g~~-~e~~~~~~~~~~~~ 230 (625)
||+ ++++|.++..++.+
T Consensus 145 Gy~~~eliG~~~~~l~~~ 162 (663)
T PRK10060 145 GLKEHDVIGQSVFKLFMS 162 (663)
T ss_pred CcCHHHHcCCCHHHHhCC
Confidence 999 88998887776543
No 150
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=87.75 E-value=25 Score=33.25 Aligned_cols=203 Identities=12% Similarity=0.121 Sum_probs=101.5
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.||+.--. ...++++++.+ ..-..+..+. . .+++.. .++.+|+.... ...++|+.+
T Consensus 11 ~g~l~~~D~~------~~~i~~~~~~~--~~~~~~~~~~----~--~G~~~~~~~g~l~v~~~~-------~~~~~d~~~ 69 (246)
T PF08450_consen 11 DGRLYWVDIP------GGRIYRVDPDT--GEVEVIDLPG----P--NGMAFDRPDGRLYVADSG-------GIAVVDPDT 69 (246)
T ss_dssp TTEEEEEETT------TTEEEEEETTT--TEEEEEESSS----E--EEEEEECTTSEEEEEETT-------CEEEEETTT
T ss_pred CCEEEEEEcC------CCEEEEEECCC--CeEEEEecCC----C--ceEEEEccCCEEEEEEcC-------ceEEEecCC
Confidence 4566666322 23488999887 3333332121 2 233333 46788888652 356679988
Q ss_pred CCCEEEEcCCC---CCCCCCccceEEEEcCCEEEEEcCcCCCCcee--ceEEEEecCCCCCceEEcCCCCCCCCCCcceE
Q 048754 394 KQPTWIEVSGG---APPLPRSWHSSCIIEGSKLVVSGGCTDAGVLL--SDTYLLDLTTDKPMWREIPTSWSPPSRLGHSL 468 (625)
Q Consensus 394 ~~~~W~~~~~~---~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~ 468 (625)
+ +++.+... ..+..+.+..+ +-.++.+|+---........ ..+++++++ .+ .+.+... ...+ .+.
T Consensus 70 g--~~~~~~~~~~~~~~~~~~ND~~-vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~-~~~p---NGi 139 (246)
T PF08450_consen 70 G--KVTVLADLPDGGVPFNRPNDVA-VDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADG-LGFP---NGI 139 (246)
T ss_dssp T--EEEEEEEEETTCSCTEEEEEEE-E-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEE-ESSE---EEE
T ss_pred C--cEEEEeeccCCCcccCCCceEE-EcCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecC-cccc---cce
Confidence 8 88766542 11233343333 33455687752111111111 578999975 23 4444321 2112 345
Q ss_pred EEECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCC-ccceEEEEecCCEEEEEe
Q 048754 469 SVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPP-RLDHVAVSMPCGRIIIFG 546 (625)
Q Consensus 469 ~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~-r~~~~~~~~~~~~l~v~G 546 (625)
+...++ .||+.--. ...++.|+++.....+....... ..+.. ...-.+++-.+++|||..
T Consensus 140 ~~s~dg~~lyv~ds~---------~~~i~~~~~~~~~~~~~~~~~~~---------~~~~~~g~pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 140 AFSPDGKTLYVADSF---------NGRIWRFDLDADGGELSNRRVFI---------DFPGGPGYPDGLAVDSDGNLWVAD 201 (246)
T ss_dssp EEETTSSEEEEEETT---------TTEEEEEEEETTTCCEEEEEEEE---------E-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred EECCcchheeecccc---------cceeEEEeccccccceeeeeeEE---------EcCCCCcCCCcceEcCCCCEEEEE
Confidence 555444 67774221 36799999874333343222110 01111 122344444478999974
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 547 GSIAGLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 547 G~~~~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
- ....|++||+ +-..-..+.
T Consensus 202 ~------~~~~I~~~~p--~G~~~~~i~ 221 (246)
T PF08450_consen 202 W------GGGRIVVFDP--DGKLLREIE 221 (246)
T ss_dssp E------TTTEEEEEET--TSCEEEEEE
T ss_pred c------CCCEEEEECC--CccEEEEEc
Confidence 3 2458999999 433444553
No 151
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=87.29 E-value=0.22 Score=40.16 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=38.3
Q ss_pred cccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhHHH
Q 048754 193 AQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVCR 241 (625)
Q Consensus 193 ~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~~ 241 (625)
..++|.+..++++|+++++++|.+ ++++|..+.+++++.....+....+
T Consensus 8 i~v~D~~~~i~~~N~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 57 (110)
T PF08448_consen 8 IFVIDPDGRIVYANQAAAELFGVSPEELIGRSLFDLLPPEDREEFQAALR 57 (110)
T ss_dssp EEEEETTSBEEEE-HHHHHHHTSTHHHHTTSBHHHHSCCGCHHHHHHHHH
T ss_pred eEEECCCCEEEEEHHHHHHHhCCCHHHHhhccchhccccchhhhhHHHHH
Confidence 345588888889999999999999 8999999999888876665544333
No 152
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.77 E-value=40 Score=34.56 Aligned_cols=136 Identities=13% Similarity=0.135 Sum_probs=64.8
Q ss_pred ccCeeEEeeecCCCCCCCcccceEE---ECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCC--CCccceeE
Q 048754 289 EAVCWRKFTVRGAVEPSRCNFSACA---AGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSP--PGRWGHTL 363 (625)
Q Consensus 289 ~~~~W~~~~~~~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p--~~r~~~~~ 363 (625)
....|++...+-.+ ...-..+.. ..+.-++.|-+ -.++.......+|.+...+... .....+..
T Consensus 73 ~G~~W~q~~~p~~~--~~~L~~V~F~~~d~~~GwAVG~~---------G~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~ 141 (398)
T PLN00033 73 QSSEWEQVDLPIDP--GVVLLDIAFVPDDPTHGFLLGTR---------QTLLETKDGGKTWVPRSIPSAEDEDFNYRFNS 141 (398)
T ss_pred CCCccEEeecCCCC--CCceEEEEeccCCCCEEEEEcCC---------CEEEEEcCCCCCceECccCcccccccccceee
Confidence 34579988632211 122233333 13477887764 2355554445689986422211 11122223
Q ss_pred EEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCC-CCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEE
Q 048754 364 SSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGA-PPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLL 442 (625)
Q Consensus 364 ~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 442 (625)
..+.++..|++|-.+ .+|-....-.+|+.++... .|.. .+....+.++..++.|.. + .++.-
T Consensus 142 v~f~~~~g~~vG~~G--------~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~---G----~v~~S 204 (398)
T PLN00033 142 ISFKGKEGWIIGKPA--------ILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE---G----AIYVT 204 (398)
T ss_pred eEEECCEEEEEcCce--------EEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc---c----eEEEE
Confidence 333456788886421 3333322223899886421 1222 233334545567777632 1 23433
Q ss_pred ecCCCCCceEEc
Q 048754 443 DLTTDKPMWREI 454 (625)
Q Consensus 443 d~~~~~~~W~~~ 454 (625)
+ .....|+.+
T Consensus 205 ~--D~G~tW~~~ 214 (398)
T PLN00033 205 S--NAGRNWKAA 214 (398)
T ss_pred C--CCCCCceEc
Confidence 3 334459887
No 153
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=86.60 E-value=0.24 Score=38.47 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=29.2
Q ss_pred CCcccccccccccCc-hhHHHHh----hhcccCchhhhhHHhHHHHH
Q 048754 202 PLSQHQDICGILQLS-DEVLAHN----ILSRLTPRDVASIGSVCRRI 243 (625)
Q Consensus 202 ~~~~n~~~~~~~g~~-~e~~~~~----~~~~~~~~~~~~~~~~~~~~ 243 (625)
++|+|+.+++++|++ +++ +.. +...+||+|...+....+..
T Consensus 1 ~i~~s~~~~~i~G~~~~~~-~~~~~~~~~~~ihpdD~~~~~~~~~~~ 46 (91)
T PF08447_consen 1 IIYWSDNFYEIFGYSPEEI-GKPDFEEWLERIHPDDRERVRQAIQQA 46 (91)
T ss_dssp -EEE-THHHHHHTS-HHHH-TCBEHHHHHHHB-TTTHHHHHHHHHHH
T ss_pred CEEEeHHHHHHhCCCHHHh-ccCCHHHHHhhcCHHHHHHHHHHHHHH
Confidence 358999999999999 555 444 88899999999886665553
No 154
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=86.43 E-value=33 Score=33.18 Aligned_cols=101 Identities=17% Similarity=0.150 Sum_probs=50.4
Q ss_pred EEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCC
Q 048754 370 WLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKP 449 (625)
Q Consensus 370 ~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~ 449 (625)
.+|+.++.+ +.+.++|+.+++. -..+... ..++. ....-+++.+|+.++. .+.+.+||+.+..
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~-~~~~~~~--~~~~~--l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~- 64 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEV-TRTFPVG--QRPRG--ITLSKDGKLLYVCASD------SDTIQVIDLATGE- 64 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCce-EEEEECC--CCCCc--eEECCCCCEEEEEECC------CCeEEEEECCCCc-
Confidence 466666643 3688899887621 1222221 11221 2222244457776652 1468889976644
Q ss_pred ceEE-cCCCCCCCCCCcceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 450 MWRE-IPTSWSPPSRLGHSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 450 ~W~~-~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
... ++. ...+ ...+... ++.+|+.++. ...+.+||+.+
T Consensus 65 -~~~~~~~--~~~~---~~~~~~~~g~~l~~~~~~---------~~~l~~~d~~~ 104 (300)
T TIGR03866 65 -VIGTLPS--GPDP---ELFALHPNGKILYIANED---------DNLVTVIDIET 104 (300)
T ss_pred -EEEeccC--CCCc---cEEEECCCCCEEEEEcCC---------CCeEEEEECCC
Confidence 332 221 1111 2233333 3356666542 25688899873
No 155
>PF07310 PAS_5: PAS domain; InterPro: IPR009922 This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long.
Probab=85.71 E-value=7.3 Score=33.11 Aligned_cols=87 Identities=25% Similarity=0.251 Sum_probs=65.9
Q ss_pred CCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEEEEeecCcceeEEE
Q 048754 66 DFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRL 145 (625)
Q Consensus 66 ~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~ 145 (625)
+.++..+-...++++|+ |+-|+...+++. |.........+..++....+..........+|....++.
T Consensus 50 ~~r~RLaGt~i~~~~G~---d~tG~~~~el~~---------~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~g~~~~~e~ 117 (137)
T PF07310_consen 50 DFRYRLAGTRIVELFGR---DLTGRRLSELFP---------PEDRERVRRAYRAVVERPAPVRARGRAEDADGRYLEYER 117 (137)
T ss_pred ceEEEEecHHHHHHhCC---CCCCCCHHHhcC---------hHhHHHHHHHHHHHHcCCceEEEEEEEecCCCCeeEEEE
Confidence 44566788889999998 456888877754 223444556666777777777777777778888888888
Q ss_pred EEEEeeCCCCCEEEEEEEE
Q 048754 146 RLAPIRDDDGTVTHIIGIQ 164 (625)
Q Consensus 146 ~~~~~~d~~g~~~~~i~~~ 164 (625)
.+-|+.+++|.+..++|+.
T Consensus 118 l~LPL~~~~~~v~rilG~~ 136 (137)
T PF07310_consen 118 LLLPLRSDGGTVDRILGAL 136 (137)
T ss_pred EEcccCCCCCCccEEEEec
Confidence 9999999999999888864
No 156
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=85.50 E-value=5.4 Score=39.22 Aligned_cols=46 Identities=4% Similarity=0.042 Sum_probs=36.7
Q ss_pred cCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhHHHH
Q 048754 197 SGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVCRR 242 (625)
Q Consensus 197 ~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~~~ 242 (625)
..|...+|+..++.+++||+ .+++++.+...++..|...++....-
T Consensus 232 slDlkliF~D~rv~qltgYepqdliektLY~~ih~~D~~~lr~~H~~ 278 (598)
T KOG3559|consen 232 SLDLKLIFLDSRVHQLTGYEPQDLIEKTLYHHIHGCDSFHLRCAHHL 278 (598)
T ss_pred ecceEEEeehhhHHHhhCCCchhhhhHHHHHHhhhhhHHHHHHHHHH
Confidence 44566778889999999999 89998999999998887766554443
No 157
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.82 E-value=49 Score=33.80 Aligned_cols=173 Identities=21% Similarity=0.287 Sum_probs=89.5
Q ss_pred EECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCC-CCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEEC
Q 048754 313 AAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKS-SPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDL 391 (625)
Q Consensus 313 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~ 391 (625)
..++.++++|+-+.- +-.+|+.+. -.++...+ .---|.+.... . +..|++-||+++ .+-.||+
T Consensus 120 ~~d~t~l~s~sDd~v------~k~~d~s~a---~v~~~l~~htDYVR~g~~~~-~-~~hivvtGsYDg-----~vrl~Dt 183 (487)
T KOG0310|consen 120 PQDNTMLVSGSDDKV------VKYWDLSTA---YVQAELSGHTDYVRCGDISP-A-NDHIVVTGSYDG-----KVRLWDT 183 (487)
T ss_pred ccCCeEEEecCCCce------EEEEEcCCc---EEEEEecCCcceeEeecccc-C-CCeEEEecCCCc-----eEEEEEe
Confidence 357888998885332 344555552 22322222 22224332222 2 457999999876 4777887
Q ss_pred CCCCCEEE-EcCCCCCCCCCccceEEEEcC-CEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcc---
Q 048754 392 DAKQPTWI-EVSGGAPPLPRSWHSSCIIEG-SKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGH--- 466 (625)
Q Consensus 392 ~t~~~~W~-~~~~~~~p~~r~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~--- 466 (625)
.+.+ .|. .+.-+. |. -..+.+.+ ..|.-.|| +.+-++|+.++. .++.....|
T Consensus 184 R~~~-~~v~elnhg~-pV----e~vl~lpsgs~iasAgG--------n~vkVWDl~~G~---------qll~~~~~H~Kt 240 (487)
T KOG0310|consen 184 RSLT-SRVVELNHGC-PV----ESVLALPSGSLIASAGG--------NSVKVWDLTTGG---------QLLTSMFNHNKT 240 (487)
T ss_pred ccCC-ceeEEecCCC-ce----eeEEEcCCCCEEEEcCC--------CeEEEEEecCCc---------eehhhhhcccce
Confidence 7663 333 333221 21 13344544 33444455 466777765433 122222212
Q ss_pred --eEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEE
Q 048754 467 --SLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIII 544 (625)
Q Consensus 467 --~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v 544 (625)
|+....++.-++.||.+ ..+-+||+. .|.-+.... .|.|-. ++.+..++.-++
T Consensus 241 VTcL~l~s~~~rLlS~sLD---------~~VKVfd~t----~~Kvv~s~~----------~~~pvL--siavs~dd~t~v 295 (487)
T KOG0310|consen 241 VTCLRLASDSTRLLSGSLD---------RHVKVFDTT----NYKVVHSWK----------YPGPVL--SIAVSPDDQTVV 295 (487)
T ss_pred EEEEEeecCCceEeecccc---------cceEEEEcc----ceEEEEeee----------ccccee--eEEecCCCceEE
Confidence 23333444666777765 577789865 677666652 233322 333344778888
Q ss_pred EecCC
Q 048754 545 FGGSI 549 (625)
Q Consensus 545 ~GG~~ 549 (625)
+|..+
T Consensus 296 iGmsn 300 (487)
T KOG0310|consen 296 IGMSN 300 (487)
T ss_pred Eeccc
Confidence 88764
No 158
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=84.38 E-value=0.51 Score=38.05 Aligned_cols=61 Identities=7% Similarity=0.095 Sum_probs=40.9
Q ss_pred cccccccccccCCCCCCcccccccccccCchhHHHHhhhcccCchhhhhHHhHHHHHHHhh
Q 048754 187 QQYDQSAQYFSGGHSPLSQHQDICGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLT 247 (625)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (625)
..+..+..++|.+..+.++|+++.+++++....+|.++.++.++.....+....+.+....
T Consensus 6 ~s~~~~i~~vD~~~~I~~~n~~a~~~f~~~~~~iGr~l~~~~~~~~~~~l~~~i~~~~~~~ 66 (106)
T PF13596_consen 6 DSMPIGIIFVDRNLRIRYFNPAAARLFNLSPSDIGRPLFDIHPPLSYPNLKKIIEQVRSGK 66 (106)
T ss_dssp HHSSSEEEEEETTSBEEEE-SCGC-SS---GGGTTSBCCCSS-HHHHHHHHHHHHHHHTTS
T ss_pred hcCCCCEEEEcCCCeEEEeChhHhhhcCCChHHCCCCHHHcCCccchHHHHHHHHHHHcCC
Confidence 3344555566888888899999999999998888999999988877777766665544433
No 159
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=84.37 E-value=40 Score=32.43 Aligned_cols=232 Identities=13% Similarity=0.168 Sum_probs=105.8
Q ss_pred CCceEEcccC-CCC--CCccceeEEEE-cCCEEEEEc--cCCCCCccc-cE-EEEECCCCCCEEEEcCCCC----CCCCC
Q 048754 343 NPEWRRVSVK-SSP--PGRWGHTLSSL-NGSWLVVFG--GCGRQGLLN-DV-FVLDLDAKQPTWIEVSGGA----PPLPR 410 (625)
Q Consensus 343 ~~~W~~~~~~-~~p--~~r~~~~~~~~-~~~~iyv~G--G~~~~~~~~-~~-~~~d~~t~~~~W~~~~~~~----~p~~r 410 (625)
..+|.....- ..+ ..+.+..+.+. .+++|+++- +........ .+ +....+. -.+|+...... .....
T Consensus 29 G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~-G~TWs~~~~l~~~~~~~~~~ 107 (275)
T PF13088_consen 29 GKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDG-GKTWSEPTDLPPGWFGNFSG 107 (275)
T ss_dssp TTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESST-TSS-EEEEEEHHHCCCSCEE
T ss_pred CCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCC-CCCCCCccccccccccceec
Confidence 4679875321 222 23333333332 466787775 222211111 11 2333332 23798654210 01111
Q ss_pred ccce-EEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceE-EEECCcEEEEEcCCcCCCCc
Q 048754 411 SWHS-SCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSL-SVYGRTKVLMFGGLAKSGHL 488 (625)
Q Consensus 411 ~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~-~~~~~~~l~v~GG~~~~~~~ 488 (625)
..+. .+.+.++.+++. .+............+.- ....+|+...... ......+.+ +...++.|+++--.. ..
T Consensus 108 ~~~~~~i~~~~G~l~~~-~~~~~~~~~~~~~~~S~-D~G~tW~~~~~~~-~~~~~~e~~~~~~~dG~l~~~~R~~-~~-- 181 (275)
T PF13088_consen 108 PGRGPPIQLPDGRLIAP-YYHESGGSFSAFVYYSD-DGGKTWSSGSPIP-DGQGECEPSIVELPDGRLLAVFRTE-GN-- 181 (275)
T ss_dssp CSEEEEEEECTTEEEEE-EEEESSCEEEEEEEEES-STTSSEEEEEECE-CSEEEEEEEEEEETTSEEEEEEEEC-SS--
T ss_pred cceeeeeEecCCCEEEE-EeeccccCcceEEEEeC-CCCceeecccccc-ccCCcceeEEEECCCCcEEEEEEcc-CC--
Confidence 1111 234446677776 21111112223333443 3445698875411 111222333 334666888874332 11
Q ss_pred ccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCC
Q 048754 489 RLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKP 568 (625)
Q Consensus 489 ~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~ 568 (625)
..++..-..+...+|+..... ..|.+.....++...++.++++...... ..+-...+... +..
T Consensus 182 ----~~~~~~~S~D~G~TWs~~~~~----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~--r~~l~l~~S~D-~g~ 244 (275)
T PF13088_consen 182 ----DDIYISRSTDGGRTWSPPQPT----------NLPNPNSSISLVRLSDGRLLLVYNNPDG--RSNLSLYVSED-GGK 244 (275)
T ss_dssp ----TEEEEEEESSTTSS-EEEEEE----------ECSSCCEEEEEEECTTSEEEEEEECSST--SEEEEEEEECT-TCE
T ss_pred ----CcEEEEEECCCCCcCCCceec----------ccCcccCCceEEEcCCCCEEEEEECCCC--CCceEEEEEeC-CCC
Confidence 244444444446799987644 2355556666666667888888772111 12222223332 478
Q ss_pred CeEEEcCCCCCCCCCC-cceEEEECCcEEEE
Q 048754 569 SWRILNVPGQPPKFAW-GHSTCVVGGTRVLV 598 (625)
Q Consensus 569 ~W~~v~~~~~~p~~r~-~~~~~~~~~~~i~i 598 (625)
+|.........+...+ +.+++...++.|+|
T Consensus 245 tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 245 TWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred cCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 9987653222222233 44455556678876
No 160
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=83.63 E-value=54 Score=33.34 Aligned_cols=218 Identities=15% Similarity=0.173 Sum_probs=112.3
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
+++||+-.... .+++||..+-...|+.-... . ++. .+.+++.+..+|+.. ..+.++.+|..+.
T Consensus 111 ~G~i~~g~~~g-------~~y~ld~~~G~~~W~~~~~~--~-~~~-~~~~v~~~~~v~~~s------~~g~~~al~~~tG 173 (370)
T COG1520 111 DGKIYVGSWDG-------KLYALDASTGTLVWSRNVGG--S-PYY-ASPPVVGDGTVYVGT------DDGHLYALNADTG 173 (370)
T ss_pred CCeEEEecccc-------eEEEEECCCCcEEEEEecCC--C-eEE-ecCcEEcCcEEEEec------CCCeEEEEEccCC
Confidence 66766655432 58999996656789865322 2 232 222334344555543 1246899999988
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcc-eEEEECC
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGH-SLSVYGR 473 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~-~~~~~~~ 473 (625)
+..|..-.... ...+...+.. ...+.+|+-.. . ....++.+|+.+.+..|..-.. .+..+..- ....+..
T Consensus 174 ~~~W~~~~~~~-~~~~~~~~~~-~~~~~vy~~~~-~----~~~~~~a~~~~~G~~~w~~~~~--~~~~~~~~~~~~~~~~ 244 (370)
T COG1520 174 TLKWTYETPAP-LSLSIYGSPA-IASGTVYVGSD-G----YDGILYALNAEDGTLKWSQKVS--QTIGRTAISTTPAVDG 244 (370)
T ss_pred cEEEEEecCCc-cccccccCce-eecceEEEecC-C----CcceEEEEEccCCcEeeeeeee--cccCcccccccccccC
Confidence 88998443221 1222222222 43546666321 1 1226899999999999985221 11111100 1122223
Q ss_pred cEEEEEcCC-cCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCC
Q 048754 474 TKVLMFGGL-AKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGL 552 (625)
Q Consensus 474 ~~l~v~GG~-~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~ 552 (625)
..+|+-|+. .... ...++.+|..+.+..|+.-.... ....+...+.....++++|+........
T Consensus 245 ~~v~v~~~~~~~~~-----~g~~~~l~~~~G~~~W~~~~~~~----------~~~~~~~~~~~~~~dG~v~~~~~~~~~~ 309 (370)
T COG1520 245 GPVYVDGGVYAGSY-----GGKLLCLDADTGELIWSFPAGGS----------VQGSGLYTTPVAGADGKVYIGFTDNDGR 309 (370)
T ss_pred ceEEECCcEEEEec-----CCeEEEEEcCCCceEEEEecccE----------eccCCeeEEeecCCCccEEEEEeccccc
Confidence 355555442 1111 24588888887777898765310 1112222222222367787775432221
Q ss_pred CCCCcEEEEeCCCCCC--CeEEEc
Q 048754 553 HSPSQLFLLDPSEEKP--SWRILN 574 (625)
Q Consensus 553 ~~~~~v~~~d~~~~~~--~W~~v~ 574 (625)
....+++++...... .|....
T Consensus 310 -~~~~~~~~~~~~g~~~~~w~~~~ 332 (370)
T COG1520 310 -GSGSLYALADVPGGTLLKWSYPV 332 (370)
T ss_pred -cccceEEEeccCCCeeEEEEEeC
Confidence 345677777522333 676553
No 161
>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A ....
Probab=82.78 E-value=0.76 Score=37.45 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=38.7
Q ss_pred cCCCCCCccccc-ccccccCc-hhHHHHhhhcccCchhhhh-HHhHHHHHHH
Q 048754 197 SGGHSPLSQHQD-ICGILQLS-DEVLAHNILSRLTPRDVAS-IGSVCRRIRQ 245 (625)
Q Consensus 197 ~~~~~~~~~n~~-~~~~~g~~-~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 245 (625)
+.+..++++-+. +..++||. +|++|..+.+++||+|+.. +....+.+..
T Consensus 9 s~dgki~~~d~~~v~~~lgy~~~eLvG~s~y~~~H~~D~~~~~~~~~~~~~~ 60 (111)
T PF14598_consen 9 SLDGKITYVDSRAVSSLLGYLPEELVGRSIYDFVHPDDLQRVLKQHHREVLQ 60 (111)
T ss_dssp ETTSBEEEEETTHHHHHHSS-HHHHTTSBGGGGBSCCTHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCccChhhcCCCcHHHcCCchHHhCCHhhhhhHHHHHHHHHhh
Confidence 456677788888 68999997 9999999999999999996 7655555443
No 162
>PRK04792 tolB translocation protein TolB; Provisional
Probab=82.19 E-value=70 Score=33.58 Aligned_cols=187 Identities=12% Similarity=0.166 Sum_probs=88.1
Q ss_pred ccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCC
Q 048754 382 LLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPP 461 (625)
Q Consensus 382 ~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~ 461 (625)
....+++.|.+.. .-..+... +. ........-++++++... ... + ...+|++|+.+.. -+.+.. .+.
T Consensus 196 ~~~~l~i~d~dG~--~~~~l~~~--~~-~~~~p~wSPDG~~La~~s-~~~-g--~~~L~~~dl~tg~--~~~lt~--~~g 262 (448)
T PRK04792 196 YPYQLMIADYDGY--NEQMLLRS--PE-PLMSPAWSPDGRKLAYVS-FEN-R--KAEIFVQDIYTQV--REKVTS--FPG 262 (448)
T ss_pred CceEEEEEeCCCC--CceEeecC--CC-cccCceECCCCCEEEEEE-ecC-C--CcEEEEEECCCCC--eEEecC--CCC
Confidence 3457888887655 33344332 11 111112222444444332 111 1 2479999987655 555543 111
Q ss_pred CCCcceEEEE-CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCC
Q 048754 462 SRLGHSLSVY-GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG 540 (625)
Q Consensus 462 ~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~ 540 (625)
........ +++.|++....+ + ..++|++|++ +.+.+.+.... ......+.. .++
T Consensus 263 --~~~~~~wSPDG~~La~~~~~~--g-----~~~Iy~~dl~--tg~~~~lt~~~-------------~~~~~p~wS-pDG 317 (448)
T PRK04792 263 --INGAPRFSPDGKKLALVLSKD--G-----QPEIYVVDIA--TKALTRITRHR-------------AIDTEPSWH-PDG 317 (448)
T ss_pred --CcCCeeECCCCCEEEEEEeCC--C-----CeEEEEEECC--CCCeEECccCC-------------CCccceEEC-CCC
Confidence 11122233 233565543221 1 2589999998 44565554320 001112222 244
Q ss_pred E-EEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccC
Q 048754 541 R-IIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 541 ~-l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
+ |+..... . ...++|.+|+ ++.++..+...+. ...+....++++.+++.+.... ..++|++++.+
T Consensus 318 ~~I~f~s~~-~---g~~~Iy~~dl--~~g~~~~Lt~~g~-----~~~~~~~SpDG~~l~~~~~~~g---~~~I~~~dl~~ 383 (448)
T PRK04792 318 KSLIFTSER-G---GKPQIYRVNL--ASGKVSRLTFEGE-----QNLGGSITPDGRSMIMVNRTNG---KFNIARQDLET 383 (448)
T ss_pred CEEEEEECC-C---CCceEEEEEC--CCCCEEEEecCCC-----CCcCeeECCCCCEEEEEEecCC---ceEEEEEECCC
Confidence 4 4443221 1 2368999999 5778888753221 1122334445455555443322 24688888765
Q ss_pred C
Q 048754 620 K 620 (625)
Q Consensus 620 ~ 620 (625)
.
T Consensus 384 g 384 (448)
T PRK04792 384 G 384 (448)
T ss_pred C
Confidence 4
No 163
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=81.84 E-value=1.2 Score=42.38 Aligned_cols=49 Identities=24% Similarity=0.484 Sum_probs=43.0
Q ss_pred ccccccccccCchhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHhh
Q 048754 205 QHQDICGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKM 255 (625)
Q Consensus 205 ~n~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (625)
.|+... ...+|+|++ ..||..++..+++.+..+|+||+.+.++..+|..
T Consensus 92 ~npgv~-~~slpDEil-l~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~ 140 (419)
T KOG2120|consen 92 NNPGVS-WDSLPDEIL-LGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT 140 (419)
T ss_pred cCCCCC-cccCCHHHH-HHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence 455555 778899998 9999999999999999999999999999999864
No 164
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=81.46 E-value=3 Score=40.85 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=54.3
Q ss_pred eEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHH-hCcceEEEEEEE
Q 048754 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE-EGIEFQGELLNF 134 (625)
Q Consensus 56 ~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~ 134 (625)
-+++... |-.+++......+++||++.+++++.+..+.+ . .+....+.....+. .|..-+-=+++.
T Consensus 227 Fmfrasl---DlkliF~D~rv~qltgYepqdliektLY~~ih---------~-~D~~~lr~~H~~ll~kGqvtTkYYR~l 293 (598)
T KOG3559|consen 227 FMFRASL---DLKLIFLDSRVHQLTGYEPQDLIEKTLYHHIH---------G-CDSFHLRCAHHLLLVKGQVTTKYYRFL 293 (598)
T ss_pred EEEEeec---ceEEEeehhhHHHhhCCCchhhhhHHHHHHhh---------h-hhHHHHHHHHHHHHhccccccHHHHHH
Confidence 3455556 78899999999999999999999998765532 1 12223333333333 333222234566
Q ss_pred eecCcceeEEEEEEEeeCC
Q 048754 135 KKDGTPLVNRLRLAPIRDD 153 (625)
Q Consensus 135 ~~dG~~~~~~~~~~~~~d~ 153 (625)
.+.|...|+......+.+.
T Consensus 294 ~k~ggwvwvqsyat~vHnS 312 (598)
T KOG3559|consen 294 LKQGGWVWVQSYATFVHNS 312 (598)
T ss_pred HcCCceEEEEEeeEEEecc
Confidence 7788888887766655443
No 165
>PRK04922 tolB translocation protein TolB; Provisional
Probab=81.07 E-value=75 Score=33.18 Aligned_cols=182 Identities=15% Similarity=0.180 Sum_probs=86.9
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR 463 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 463 (625)
..+|++|+.++ ....+... +.. .......-+++++++..... + ..+++++|+.+.. ...+... . .
T Consensus 228 ~~l~~~dl~~g--~~~~l~~~--~g~-~~~~~~SpDG~~l~~~~s~~-g---~~~Iy~~d~~~g~--~~~lt~~--~-~- 292 (433)
T PRK04922 228 SAIYVQDLATG--QRELVASF--RGI-NGAPSFSPDGRRLALTLSRD-G---NPEIYVMDLGSRQ--LTRLTNH--F-G- 292 (433)
T ss_pred cEEEEEECCCC--CEEEeccC--CCC-ccCceECCCCCEEEEEEeCC-C---CceEEEEECCCCC--eEECccC--C-C-
Confidence 56999999887 66666543 211 11122223455565543211 1 1479999987655 5555432 1 1
Q ss_pred CcceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCC-E
Q 048754 464 LGHSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG-R 541 (625)
Q Consensus 464 ~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~-~ 541 (625)
.........++ .|+...... + ..++|.+|+. +.+.+.+... ...........++ .
T Consensus 293 ~~~~~~~spDG~~l~f~sd~~--g-----~~~iy~~dl~--~g~~~~lt~~--------------g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 293 IDTEPTWAPDGKSIYFTSDRG--G-----RPQIYRVAAS--GGSAERLTFQ--------------GNYNARASVSPDGKK 349 (433)
T ss_pred CccceEECCCCCEEEEEECCC--C-----CceEEEEECC--CCCeEEeecC--------------CCCccCEEECCCCCE
Confidence 11122333333 444432221 1 2578999987 4456665422 1111112222244 4
Q ss_pred EEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEcc
Q 048754 542 IIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLA 618 (625)
Q Consensus 542 l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~ 618 (625)
|++..+ ..+ ...++++|+ .+.....+.. +.. ........+++.+++...... ...+|.++++
T Consensus 350 Ia~~~~-~~~---~~~I~v~d~--~~g~~~~Lt~-~~~-----~~~p~~spdG~~i~~~s~~~g---~~~L~~~~~~ 411 (433)
T PRK04922 350 IAMVHG-SGG---QYRIAVMDL--STGSVRTLTP-GSL-----DESPSFAPNGSMVLYATREGG---RGVLAAVSTD 411 (433)
T ss_pred EEEEEC-CCC---ceeEEEEEC--CCCCeEECCC-CCC-----CCCceECCCCCEEEEEEecCC---ceEEEEEECC
Confidence 444433 211 237999998 5666665542 111 112233445566666544322 2456666653
No 166
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=80.97 E-value=49 Score=30.98 Aligned_cols=266 Identities=14% Similarity=0.178 Sum_probs=100.9
Q ss_pred EEECCEEEE--EcccCCCCCCCCCeEEEeccCCCCceEEccc-CC----CCCC-ccceeEEEEcCCEEEEEccC--CCCC
Q 048754 312 CAAGNRLVL--FGGEGVNMQPMDDTFVLNLDAANPEWRRVSV-KS----SPPG-RWGHTLSSLNGSWLVVFGGC--GRQG 381 (625)
Q Consensus 312 ~~~~~~lyv--~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~----~p~~-r~~~~~~~~~~~~iyv~GG~--~~~~ 381 (625)
.+.++-||. ++|....-..+.-.|+-..+.. .+|+..+- .+ -|.- --++++.++ ++++|..=-. -...
T Consensus 22 FVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG-~TWttPEwLtd~H~~yptvnyHCmSMGv~-~NRLfa~iEtR~~a~~ 99 (367)
T PF12217_consen 22 FVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDG-QTWTTPEWLTDLHPDYPTVNYHCMSMGVV-GNRLFAVIETRTVASN 99 (367)
T ss_dssp EEETTEEEEEEEEESSSSSTT-EEEEEEESSTT-SS----EESS---TTTTTEEEE-B-EEEE-TTEEEEEEEEEETTT-
T ss_pred eeecCeeecccccccccCccceEEEEEEecCCC-CcccCchhhhhcCCCCCccceeeeeeeee-cceeeEEEeehhhhhh
Confidence 345565552 3443333233333455555443 67875431 11 1221 123455545 6788776322 1222
Q ss_pred ccccEEEEE---CCCCCCEEEEcCCCCCCC-------CCccceEEEEcCCEEEEEcCcCCCCceeceEEEEec----CCC
Q 048754 382 LLNDVFVLD---LDAKQPTWIEVSGGAPPL-------PRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDL----TTD 447 (625)
Q Consensus 382 ~~~~~~~~d---~~t~~~~W~~~~~~~~p~-------~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~----~~~ 447 (625)
.+.....|+ ...+ .|+...-+..|. .-.-|+.|.++++ -|.+|=. .+......+-.+-. .+.
T Consensus 100 km~~~~Lw~RpMF~~s--pW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~-~fA~GyH-nGD~sPRe~G~~yfs~~~~sp 175 (367)
T PF12217_consen 100 KMVRAELWSRPMFHDS--PWRITELGTIASFTSAGVAVTELHSFATIDDN-QFAVGYH-NGDVSPRELGFLYFSDAFASP 175 (367)
T ss_dssp -EEEEEEEEEE-STTS----EEEEEES-TT--------SEEEEEEE-SSS--EEEEEE-E-SSSS-EEEEEEETTTTT-T
T ss_pred hhhhhhhhcccccccC--CceeeecccccccccccceeeeeeeeeEecCC-ceeEEec-cCCCCcceeeEEEecccccCC
Confidence 344455555 2344 787433222232 4456888888664 4566532 22211222222211 111
Q ss_pred CCce-EEcCCCCCCCCCCcceEEEECCcEEEEEc-CCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC
Q 048754 448 KPMW-REIPTSWSPPSRLGHSLSVYGRTKVLMFG-GLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 448 ~~~W-~~~~~~~~p~~r~~~~~~~~~~~~l~v~G-G~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~ 525 (625)
...- ..++.. ....-...+.-.+++ .||+.- |...... -..+.+-+.. ...|..+...
T Consensus 176 ~~~vrr~i~se-y~~~AsEPCvkyY~g-~LyLtTRgt~~~~~----GS~L~rs~d~--G~~w~slrfp------------ 235 (367)
T PF12217_consen 176 GVFVRRIIPSE-YERNASEPCVKYYDG-VLYLTTRGTLPTNP----GSSLHRSDDN--GQNWSSLRFP------------ 235 (367)
T ss_dssp T--EEEE--GG-G-TTEEEEEEEEETT-EEEEEEEES-TTS-------EEEEESST--TSS-EEEE-T------------
T ss_pred cceeeeechhh-hccccccchhhhhCC-EEEEEEcCcCCCCC----cceeeeeccc--CCchhhcccc------------
Confidence 1111 122211 111111122333444 998875 3332222 1445555555 5689988643
Q ss_pred CCCccceEEEEecCCEEEEEecCCCCC---------C---CCCcEEEE--eCC---CCCCCeEEEcC---CCCCCCCCCc
Q 048754 526 PPPRLDHVAVSMPCGRIIIFGGSIAGL---------H---SPSQLFLL--DPS---EEKPSWRILNV---PGQPPKFAWG 585 (625)
Q Consensus 526 p~~r~~~~~~~~~~~~l~v~GG~~~~~---------~---~~~~v~~~--d~~---~~~~~W~~v~~---~~~~p~~r~~ 585 (625)
..-....--+...++.|||||-....+ . ..+..+.. ++. -++-+|..+.. .|..-..-.+
T Consensus 236 ~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavG 315 (367)
T PF12217_consen 236 NNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVG 315 (367)
T ss_dssp T---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SE
T ss_pred ccccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceecccccccccc
Confidence 111111122334499999998643110 1 12333322 221 13556666652 1223333445
Q ss_pred ceEEEECCcEEE-EEcCcC
Q 048754 586 HSTCVVGGTRVL-VLGGHT 603 (625)
Q Consensus 586 ~~~~~~~~~~i~-i~GG~~ 603 (625)
-+.+++.|+.|| +|||.+
T Consensus 316 VGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 316 VGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp EEEEEEETTEEEEEEEEB-
T ss_pred ceeEEEECCEEEEEecCcc
Confidence 666777777776 799976
No 167
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=79.94 E-value=78 Score=32.69 Aligned_cols=141 Identities=18% Similarity=0.266 Sum_probs=67.8
Q ss_pred ceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECC-cEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccc
Q 048754 437 SDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGR-TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAF 515 (625)
Q Consensus 437 ~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~ 515 (625)
..++++|+.+.. ...+.. .+... .+.....+ +.|++..... + ..++|.+|+.+ .....+...
T Consensus 214 ~~i~v~d~~~g~--~~~~~~--~~~~~--~~~~~spDg~~l~~~~~~~--~-----~~~i~~~d~~~--~~~~~l~~~-- 276 (417)
T TIGR02800 214 PEIYVQDLATGQ--REKVAS--FPGMN--GAPAFSPDGSKLAVSLSKD--G-----NPDIYVMDLDG--KQLTRLTNG-- 276 (417)
T ss_pred cEEEEEECCCCC--EEEeec--CCCCc--cceEECCCCCEEEEEECCC--C-----CccEEEEECCC--CCEEECCCC--
Confidence 578999987654 444432 11111 12233333 3565543221 1 26799999883 345554322
Q ss_pred cCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcE
Q 048754 516 TGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTR 595 (625)
Q Consensus 516 ~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~ 595 (625)
+.. ....... .+++-+++..... ....+|.+|+ .+..+..+...+ ..........+++
T Consensus 277 ----------~~~-~~~~~~s-~dg~~l~~~s~~~---g~~~iy~~d~--~~~~~~~l~~~~-----~~~~~~~~spdg~ 334 (417)
T TIGR02800 277 ----------PGI-DTEPSWS-PDGKSIAFTSDRG---GSPQIYMMDA--DGGEVRRLTFRG-----GYNASPSWSPDGD 334 (417)
T ss_pred ----------CCC-CCCEEEC-CCCCEEEEEECCC---CCceEEEEEC--CCCCEEEeecCC-----CCccCeEECCCCC
Confidence 000 0011122 2444333332211 1358999998 566677665322 1222333444556
Q ss_pred EEEEcCcCCCCCccCceEEEEccC
Q 048754 596 VLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 596 i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
.+++....+. ...++++++.+
T Consensus 335 ~i~~~~~~~~---~~~i~~~d~~~ 355 (417)
T TIGR02800 335 LIAFVHREGG---GFNIAVMDLDG 355 (417)
T ss_pred EEEEEEccCC---ceEEEEEeCCC
Confidence 6666654432 24677777654
No 168
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=78.76 E-value=41 Score=32.03 Aligned_cols=104 Identities=21% Similarity=0.201 Sum_probs=62.4
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
.++.+|.--|.-+ .+.+..+|+.|+ +-...... |..-++-..+.+ ++++|..-= .....++||+++
T Consensus 54 ~~g~LyESTG~yG---~S~l~~~d~~tg--~~~~~~~l--~~~~FgEGit~~-~d~l~qLTW------k~~~~f~yd~~t 119 (264)
T PF05096_consen 54 DDGTLYESTGLYG---QSSLRKVDLETG--KVLQSVPL--PPRYFGEGITIL-GDKLYQLTW------KEGTGFVYDPNT 119 (264)
T ss_dssp ETTEEEEEECSTT---EEEEEEEETTTS--SEEEEEE---TTT--EEEEEEE-TTEEEEEES------SSSEEEEEETTT
T ss_pred CCCEEEEeCCCCC---cEEEEEEECCCC--cEEEEEEC--CccccceeEEEE-CCEEEEEEe------cCCeEEEEcccc
Confidence 5678888877654 357889999998 43322222 444455555555 668988532 124678999754
Q ss_pred CCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 447 DKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 447 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
.+.+.. .+.+.-+-+.+..++ .|++.-| ++.++.+|++
T Consensus 120 ----l~~~~~--~~y~~EGWGLt~dg~-~Li~SDG----------S~~L~~~dP~ 157 (264)
T PF05096_consen 120 ----LKKIGT--FPYPGEGWGLTSDGK-RLIMSDG----------SSRLYFLDPE 157 (264)
T ss_dssp ----TEEEEE--EE-SSS--EEEECSS-CEEEE-S----------SSEEEEE-TT
T ss_pred ----ceEEEE--EecCCcceEEEcCCC-EEEEECC----------ccceEEECCc
Confidence 555543 233345566764444 8999877 3899999987
No 169
>PRK05137 tolB translocation protein TolB; Provisional
Probab=78.21 E-value=92 Score=32.53 Aligned_cols=194 Identities=17% Similarity=0.178 Sum_probs=90.8
Q ss_pred CCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCc
Q 048754 332 DDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRS 411 (625)
Q Consensus 332 ~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~ 411 (625)
..+|++|+.+ ....++. ..+.. .......-++++|++....++ ..++|++|..++ ...++... +. ..
T Consensus 226 ~~i~~~dl~~--g~~~~l~--~~~g~-~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~Lt~~--~~-~~ 292 (435)
T PRK05137 226 PRVYLLDLET--GQRELVG--NFPGM-TFAPRFSPDGRKVVMSLSQGG---NTDIYTMDLRSG--TTTRLTDS--PA-ID 292 (435)
T ss_pred CEEEEEECCC--CcEEEee--cCCCc-ccCcEECCCCCEEEEEEecCC---CceEEEEECCCC--ceEEccCC--CC-cc
Confidence 4699999977 4566553 21211 111112224556655543322 357999999887 66777643 21 11
Q ss_pred cceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE-CCcEEEEEcCCcCCCCccc
Q 048754 412 WHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY-GRTKVLMFGGLAKSGHLRL 490 (625)
Q Consensus 412 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~ 490 (625)
......-+++.+++... ..+ ...+|++|+++.. .+.+... ..... ..... +++.|++.. ... +
T Consensus 293 ~~~~~spDG~~i~f~s~--~~g--~~~Iy~~d~~g~~--~~~lt~~---~~~~~-~~~~SpdG~~ia~~~-~~~-~---- 356 (435)
T PRK05137 293 TSPSYSPDGSQIVFESD--RSG--SPQLYVMNADGSN--PRRISFG---GGRYS-TPVWSPRGDLIAFTK-QGG-G---- 356 (435)
T ss_pred CceeEcCCCCEEEEEEC--CCC--CCeEEEEECCCCC--eEEeecC---CCccc-CeEECCCCCEEEEEE-cCC-C----
Confidence 11222234545554321 111 2478999976544 5665431 11121 22232 333454433 211 1
Q ss_pred ccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCe
Q 048754 491 RSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSW 570 (625)
Q Consensus 491 ~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W 570 (625)
...++++|++. .....+... .......+ ..+++.+++-....+......+|.+|+ +...-
T Consensus 357 -~~~i~~~d~~~--~~~~~lt~~--------------~~~~~p~~-spDG~~i~~~~~~~~~~~~~~L~~~dl--~g~~~ 416 (435)
T PRK05137 357 -QFSIGVMKPDG--SGERILTSG--------------FLVEGPTW-APNGRVIMFFRQTPGSGGAPKLYTVDL--TGRNE 416 (435)
T ss_pred -ceEEEEEECCC--CceEeccCC--------------CCCCCCeE-CCCCCEEEEEEccCCCCCcceEEEEEC--CCCce
Confidence 14688888863 333333211 11112222 225555555443222211257999998 34444
Q ss_pred EEEc
Q 048754 571 RILN 574 (625)
Q Consensus 571 ~~v~ 574 (625)
..+.
T Consensus 417 ~~l~ 420 (435)
T PRK05137 417 REVP 420 (435)
T ss_pred EEcc
Confidence 5554
No 170
>PRK03629 tolB translocation protein TolB; Provisional
Probab=76.33 E-value=1e+02 Score=32.11 Aligned_cols=183 Identities=13% Similarity=0.188 Sum_probs=88.9
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR 463 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 463 (625)
..++++|+.++ +-..+... +.. .......-+++++++..... + ..++|++|+++.. ...+... +..
T Consensus 223 ~~i~i~dl~~G--~~~~l~~~--~~~-~~~~~~SPDG~~La~~~~~~--g--~~~I~~~d~~tg~--~~~lt~~--~~~- 288 (429)
T PRK03629 223 SALVIQTLANG--AVRQVASF--PRH-NGAPAFSPDGSKLAFALSKT--G--SLNLYVMDLASGQ--IRQVTDG--RSN- 288 (429)
T ss_pred cEEEEEECCCC--CeEEccCC--CCC-cCCeEECCCCCEEEEEEcCC--C--CcEEEEEECCCCC--EEEccCC--CCC-
Confidence 46899999887 55555432 111 11122223555565543211 1 1368999987655 6666532 111
Q ss_pred CcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEE
Q 048754 464 LGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRII 543 (625)
Q Consensus 464 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~ 543 (625)
........+++.+++.... .+ ..++|.+|+.+ ..-..+... ..... ......+++.+
T Consensus 289 -~~~~~wSPDG~~I~f~s~~-~g-----~~~Iy~~d~~~--g~~~~lt~~-------------~~~~~-~~~~SpDG~~I 345 (429)
T PRK03629 289 -NTEPTWFPDSQNLAYTSDQ-AG-----RPQVYKVNING--GAPQRITWE-------------GSQNQ-DADVSSDGKFM 345 (429)
T ss_pred -cCceEECCCCCEEEEEeCC-CC-----CceEEEEECCC--CCeEEeecC-------------CCCcc-CEEECCCCCEE
Confidence 1222333333433332211 11 25889999873 344454322 11111 12223355555
Q ss_pred EEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEc
Q 048754 544 IFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCL 617 (625)
Q Consensus 544 v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~ 617 (625)
++.+...+ ..+++.+|+ ++..+..+.... ........+|++.+++.+..+.. ..++.+++
T Consensus 346 a~~~~~~g---~~~I~~~dl--~~g~~~~Lt~~~------~~~~p~~SpDG~~i~~~s~~~~~---~~l~~~~~ 405 (429)
T PRK03629 346 VMVSSNGG---QQHIAKQDL--ATGGVQVLTDTF------LDETPSIAPNGTMVIYSSSQGMG---SVLNLVST 405 (429)
T ss_pred EEEEccCC---CceEEEEEC--CCCCeEEeCCCC------CCCCceECCCCCEEEEEEcCCCc---eEEEEEEC
Confidence 55443222 347999999 577777775211 11223344666777777655432 33444444
No 171
>PRK00178 tolB translocation protein TolB; Provisional
Probab=75.47 E-value=1.1e+02 Score=31.91 Aligned_cols=148 Identities=16% Similarity=0.175 Sum_probs=73.1
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR 463 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 463 (625)
..+|++|+.++ .-..+... +. ........-+++++++.... .+ ..++|++|+++.. ...+... + ..
T Consensus 223 ~~l~~~~l~~g--~~~~l~~~--~g-~~~~~~~SpDG~~la~~~~~--~g--~~~Iy~~d~~~~~--~~~lt~~--~-~~ 288 (430)
T PRK00178 223 PRIFVQNLDTG--RREQITNF--EG-LNGAPAWSPDGSKLAFVLSK--DG--NPEIYVMDLASRQ--LSRVTNH--P-AI 288 (430)
T ss_pred CEEEEEECCCC--CEEEccCC--CC-CcCCeEECCCCCEEEEEEcc--CC--CceEEEEECCCCC--eEEcccC--C-CC
Confidence 47999999888 66666542 11 11111112245555543221 11 1479999987765 7776532 1 11
Q ss_pred CcceEEEE-CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEE
Q 048754 464 LGHSLSVY-GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542 (625)
Q Consensus 464 ~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 542 (625)
....... +++.|++..... + ...+|.+|+. +.+++.+... ..........- +++.
T Consensus 289 -~~~~~~spDg~~i~f~s~~~--g-----~~~iy~~d~~--~g~~~~lt~~-------------~~~~~~~~~Sp-dg~~ 344 (430)
T PRK00178 289 -DTEPFWGKDGRTLYFTSDRG--G-----KPQIYKVNVN--GGRAERVTFV-------------GNYNARPRLSA-DGKT 344 (430)
T ss_pred -cCCeEECCCCCEEEEEECCC--C-----CceEEEEECC--CCCEEEeecC-------------CCCccceEECC-CCCE
Confidence 1122233 333555542211 1 2578999987 4466666432 01111122222 4443
Q ss_pred EEEecCCCCCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 543 IIFGGSIAGLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 543 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
+++.....+ ..+++.+|+ .+...+.+.
T Consensus 345 i~~~~~~~~---~~~l~~~dl--~tg~~~~lt 371 (430)
T PRK00178 345 LVMVHRQDG---NFHVAAQDL--QRGSVRILT 371 (430)
T ss_pred EEEEEccCC---ceEEEEEEC--CCCCEEEcc
Confidence 333332211 336999999 566676664
No 172
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=75.44 E-value=7.5 Score=39.95 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=64.9
Q ss_pred CCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEEEEeecCcceeEEE
Q 048754 66 DFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRL 145 (625)
Q Consensus 66 ~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~ 145 (625)
|+..+.+......++||...|+.|.+...|.+ -++..-..+...+.+++|++--.-++..+|+|+..|+..
T Consensus 292 Dfa~vs~Dak~k~~lgy~eaEL~~m~gY~lvH---------~~D~~y~Aeah~e~iktgeSGmlvyR~qtk~grw~wvqs 362 (712)
T KOG3560|consen 292 DFALVSMDAKVKATLGYCEAELHGMPGYNLVH---------VEDKVYMAEAHSEGIKTGESGMLVYREQTKAGRWAWVQS 362 (712)
T ss_pred ccceeccchhhhhhhccchhhccCCCccceee---------hhhhhhhhHHHHHHhhcCCcceEEEEEeecCCcEEEeec
Confidence 56666677778889999999999988777753 223333345566778888887777888899999999988
Q ss_pred EEEEeeCCCCCEEEEEEEEE
Q 048754 146 RLAPIRDDDGTVTHIIGIQI 165 (625)
Q Consensus 146 ~~~~~~d~~g~~~~~i~~~~ 165 (625)
+...+. .+|++-.++.+-+
T Consensus 363 sarlly-kngkPD~vi~thr 381 (712)
T KOG3560|consen 363 SARLLY-KNGKPDLVIDTHR 381 (712)
T ss_pred cceeee-ecCCCCEEEecCC
Confidence 766543 5677665555443
No 173
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=74.54 E-value=2.7 Score=41.08 Aligned_cols=47 Identities=19% Similarity=0.156 Sum_probs=40.9
Q ss_pred cccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCccccc
Q 048754 46 GLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQY 97 (625)
Q Consensus 46 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~ 97 (625)
++++. .+++++.+|. .|.+..+|+|+++++|.+++++.|.+...++.
T Consensus 84 aLL~a--l~~pVlsvd~---kg~v~~aNpAa~~l~~~~~~~~~g~~~~~l~~ 130 (511)
T COG3283 84 ALLEA--LPEPVLSVDM---KGKVDMANPAACQLFGRKEDRLRGHTAAQLIN 130 (511)
T ss_pred HHHHh--CCCceEEecc---cCceeecCHHHHHHhCCChhhhcCccHHHhcC
Confidence 34444 8999999999 99999999999999999999999998776653
No 174
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=74.43 E-value=0.79 Score=52.16 Aligned_cols=70 Identities=7% Similarity=-0.032 Sum_probs=46.4
Q ss_pred EeeecccccCCcchhhhhhhhccccccccc---cccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhh
Q 048754 165 IFSEAKIDLNHVSYPVFKENCNQQYDQSAQ---YFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVAS 235 (625)
Q Consensus 165 ~Dit~~~~~e~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~ 235 (625)
++++++++.++ .++..++.++..++.... ++|.++.++++|+++++++|++ ++++|..+.++++++....
T Consensus 138 ~~i~~r~~~~~-~l~~~~~~l~~il~~~~~~i~~~D~~g~i~~~N~a~~~l~G~~~~eliG~~~~~l~~~~~~~~ 211 (779)
T PRK11091 138 NEIKEREETQI-ELEQQSSLLRSFLDASPDLVYYRNEDGEFSGCNRAMELLTGKSEKQLIGLTPKDVYSPEAAEK 211 (779)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhcCcceEEEECCCCcEEeEcHHHHHHhCcCHHHHcCCChHHhCCHHHHHH
Confidence 45666655433 222333444444443333 4477778889999999999999 8888888888888765443
No 175
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=74.42 E-value=0.042 Score=57.50 Aligned_cols=68 Identities=9% Similarity=-0.053 Sum_probs=42.8
Q ss_pred EEEeeecccccCCcchhhhhhhhcccccccc---ccccCCCCCCcccccccccccCc-hhHHHHhhhcccCch
Q 048754 163 IQIFSEAKIDLNHVSYPVFKENCNQQYDQSA---QYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPR 231 (625)
Q Consensus 163 ~~~Dit~~~~~e~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~ 231 (625)
+.+++++.++.++ .++..+++++..++... .++|.++.++++|+++++++|++ ++..|.++...+.++
T Consensus 79 ~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~i~~~d~~g~i~~~N~~a~~l~g~~~~~~~g~~~~~~~~~~ 150 (430)
T PRK11006 79 LYQMQLRNRKRRR-ELGNLIKRFRSGAESLPDAVVLTTEEGNIFWCNGLAQQLLGFRWPEDNGQNILNLLRYP 150 (430)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCeEEEEcCCCceeHHHHHHHHHhCCCChHhCCCcHHHHhcCH
Confidence 3445555544332 22334444555543333 34487888889999999999998 777877776665543
No 176
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.
Probab=71.26 E-value=0.99 Score=32.26 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=18.7
Q ss_pred cccccccccCCCCCCcccccccccccCc
Q 048754 189 YDQSAQYFSGGHSPLSQHQDICGILQLS 216 (625)
Q Consensus 189 ~~~~~~~~~~~~~~~~~n~~~~~~~g~~ 216 (625)
......+++ +..++++|+++++++|++
T Consensus 10 ~~~~i~i~d-~~~i~~~N~~~~~l~g~~ 36 (64)
T PF13188_consen 10 SPDGILIID-GGRIIYVNPAFEELFGYS 36 (64)
T ss_dssp SSSEEEEEE-TSBEEEE-HHHHHHHCS-
T ss_pred CccceEEEE-CCChHHhhHHHHHHhCCC
Confidence 344444567 556779999999999998
No 177
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=70.15 E-value=98 Score=29.15 Aligned_cols=153 Identities=14% Similarity=0.145 Sum_probs=80.6
Q ss_pred CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE-CCcEEEEEcCCcCCCCcccccCceEEE
Q 048754 420 GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY-GRTKVLMFGGLAKSGHLRLRSGESYTI 498 (625)
Q Consensus 420 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~ 498 (625)
++.+|+..- ....++.+++.+.. -..+.. +. ..++++. .++.+|+... ..+.++
T Consensus 11 ~g~l~~~D~------~~~~i~~~~~~~~~--~~~~~~---~~---~~G~~~~~~~g~l~v~~~-----------~~~~~~ 65 (246)
T PF08450_consen 11 DGRLYWVDI------PGGRIYRVDPDTGE--VEVIDL---PG---PNGMAFDRPDGRLYVADS-----------GGIAVV 65 (246)
T ss_dssp TTEEEEEET------TTTEEEEEETTTTE--EEEEES---SS---EEEEEEECTTSEEEEEET-----------TCEEEE
T ss_pred CCEEEEEEc------CCCEEEEEECCCCe--EEEEec---CC---CceEEEEccCCEEEEEEc-----------CceEEE
Confidence 567777632 22478999986654 443332 22 2345554 4568888744 455677
Q ss_pred EcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCC--CcEEEEeCCCCCCCeEEEcCC
Q 048754 499 DLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSP--SQLFLLDPSEEKPSWRILNVP 576 (625)
Q Consensus 499 d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~--~~v~~~d~~~~~~~W~~v~~~ 576 (625)
|+. +.+++.+.... .+..+..+.+-.+ +-.+++||+---........ ..+|++++ + .+...+...
T Consensus 66 d~~--~g~~~~~~~~~-------~~~~~~~~~ND~~-vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~--~-~~~~~~~~~ 132 (246)
T PF08450_consen 66 DPD--TGKVTVLADLP-------DGGVPFNRPNDVA-VDPDGNLYVTDSGGGGASGIDPGSVYRIDP--D-GKVTVVADG 132 (246)
T ss_dssp ETT--TTEEEEEEEEE-------TTCSCTEEEEEEE-E-TTS-EEEEEECCBCTTCGGSEEEEEEET--T-SEEEEEEEE
T ss_pred ecC--CCcEEEEeecc-------CCCcccCCCceEE-EcCCCCEEEEecCCCccccccccceEEECC--C-CeEEEEecC
Confidence 888 55787776651 0111233333333 34477887753221111112 57999998 4 555555321
Q ss_pred CCCCCCCCcceEEEECCcE-EEEEcCcCCCCCccCceEEEEccCCC
Q 048754 577 GQPPKFAWGHSTCVVGGTR-VLVLGGHTGEEWVLNELHELCLASKQ 621 (625)
Q Consensus 577 ~~~p~~r~~~~~~~~~~~~-i~i~GG~~~~~~~~~d~~~~~~~~~~ 621 (625)
...-.+.++..+++ ||+.- ...+.||+|+++...
T Consensus 133 -----~~~pNGi~~s~dg~~lyv~d------s~~~~i~~~~~~~~~ 167 (246)
T PF08450_consen 133 -----LGFPNGIAFSPDGKTLYVAD------SFNGRIWRFDLDADG 167 (246)
T ss_dssp -----ESSEEEEEEETTSSEEEEEE------TTTTEEEEEEEETTT
T ss_pred -----cccccceEECCcchheeecc------cccceeEEEeccccc
Confidence 11224566666554 55521 123558888886443
No 178
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=70.02 E-value=1.2e+02 Score=30.00 Aligned_cols=259 Identities=14% Similarity=0.118 Sum_probs=115.6
Q ss_pred EEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE--cCCEEEEEccCCCCCccccEEEEECCCCCCE
Q 048754 320 LFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL--NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPT 397 (625)
Q Consensus 320 v~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~ 397 (625)
++|.+... ....+++|++++.+.+-..++....+ ..-+-.++ +++.+|++..-+..+ --..|.+|.+.+ +
T Consensus 6 YiGtyT~~--~s~gI~v~~ld~~~g~l~~~~~v~~~---~nptyl~~~~~~~~LY~v~~~~~~g-gvaay~iD~~~G--~ 77 (346)
T COG2706 6 YIGTYTKR--ESQGIYVFNLDTKTGELSLLQLVAEL---GNPTYLAVNPDQRHLYVVNEPGEEG-GVAAYRIDPDDG--R 77 (346)
T ss_pred EEeeeccc--CCCceEEEEEeCcccccchhhhcccc---CCCceEEECCCCCEEEEEEecCCcC-cEEEEEEcCCCC--e
Confidence 44555321 24558999988643333322211111 11122222 234678776543211 123455565556 6
Q ss_pred EEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcC----CCCCCCCC----CcceEE
Q 048754 398 WIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIP----TSWSPPSR----LGHSLS 469 (625)
Q Consensus 398 W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~----~~~~p~~r----~~~~~~ 469 (625)
.+.+.....+..-..|.+ ++.+.=|||..... ...+-+|-+..+..-|..+. .+..|-+| ..|.+.
T Consensus 78 Lt~ln~~~~~g~~p~yvs--vd~~g~~vf~AnY~----~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~ 151 (346)
T COG2706 78 LTFLNRQTLPGSPPCYVS--VDEDGRFVFVANYH----SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN 151 (346)
T ss_pred EEEeeccccCCCCCeEEE--ECCCCCEEEEEEcc----CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence 665542211111112333 32323233322111 24566676645433343321 11223344 134444
Q ss_pred EECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCC
Q 048754 470 VYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSI 549 (625)
Q Consensus 470 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~ 549 (625)
.-.++++++.--. ..+.++.|+++.. .-+...... ..|-.--.|-++.-.+...|++.-.+
T Consensus 152 ~tP~~~~l~v~DL--------G~Dri~~y~~~dg--~L~~~~~~~---------v~~G~GPRHi~FHpn~k~aY~v~EL~ 212 (346)
T COG2706 152 FTPDGRYLVVPDL--------GTDRIFLYDLDDG--KLTPADPAE---------VKPGAGPRHIVFHPNGKYAYLVNELN 212 (346)
T ss_pred eCCCCCEEEEeec--------CCceEEEEEcccC--ccccccccc---------cCCCCCcceEEEcCCCcEEEEEeccC
Confidence 4444333333111 1489999998842 333333221 11211122444444345688886653
Q ss_pred CCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCC---CCCcceEE-EECCcEEEEEcCcCCCCCccCceEEEEccCCCC
Q 048754 550 AGLHSPSQLFLLDPSEEKPSWRILNVPGQPPK---FAWGHSTC-VVGGTRVLVLGGHTGEEWVLNELHELCLASKQD 622 (625)
Q Consensus 550 ~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~---~r~~~~~~-~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~~~ 622 (625)
+ .-++|.||. ...+...++....+|. +-.+.+++ +..+++++..-- ...+.|++|.++.+.+
T Consensus 213 s----tV~v~~y~~--~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN-----Rg~dsI~~f~V~~~~g 278 (346)
T COG2706 213 S----TVDVLEYNP--AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN-----RGHDSIAVFSVDPDGG 278 (346)
T ss_pred C----EEEEEEEcC--CCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec-----CCCCeEEEEEEcCCCC
Confidence 1 235555665 4677888876555554 22233444 334544443321 1246778887776643
No 179
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.76 E-value=1e+02 Score=29.13 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=52.1
Q ss_pred EEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCc
Q 048754 415 SCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGE 494 (625)
Q Consensus 415 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 494 (625)
.+++++.+-|++=|... ..+-..|+.+.+..|+.+- ..|...+++++++ ++|+|-. ...
T Consensus 16 LVV~~dskT~v~igSHs-----~~~~avd~~sG~~~We~il-----g~RiE~sa~vvgd--fVV~GCy---------~g~ 74 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHS-----GIVIAVDPQSGNLIWEAIL-----GVRIECSAIVVGD--FVVLGCY---------SGG 74 (354)
T ss_pred EEEecCCceEEEEecCC-----ceEEEecCCCCcEEeehhh-----CceeeeeeEEECC--EEEEEEc---------cCc
Confidence 45555545555545332 3566678989999998864 3677778888876 4666554 478
Q ss_pred eEEEEcCCCCCceeEeee
Q 048754 495 SYTIDLGDEEPQWKQLEC 512 (625)
Q Consensus 495 ~~~~d~~~~~~~W~~~~~ 512 (625)
+|.++.+++..-|..+..
T Consensus 75 lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 75 LYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred EEEEEecchhheeeeeeh
Confidence 899999876667876653
No 180
>PRK04922 tolB translocation protein TolB; Provisional
Probab=69.37 E-value=1.5e+02 Score=30.93 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=65.6
Q ss_pred ceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE-CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccc
Q 048754 437 SDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY-GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAF 515 (625)
Q Consensus 437 ~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~ 515 (625)
..++++|+.+.. ...+.. .+.. . .+...- ++++|++..... + ..++|++|+.+ .....+...
T Consensus 228 ~~l~~~dl~~g~--~~~l~~--~~g~-~-~~~~~SpDG~~l~~~~s~~--g-----~~~Iy~~d~~~--g~~~~lt~~-- 290 (433)
T PRK04922 228 SAIYVQDLATGQ--RELVAS--FRGI-N-GAPSFSPDGRRLALTLSRD--G-----NPEIYVMDLGS--RQLTRLTNH-- 290 (433)
T ss_pred cEEEEEECCCCC--EEEecc--CCCC-c-cCceECCCCCEEEEEEeCC--C-----CceEEEEECCC--CCeEECccC--
Confidence 478999987655 555543 2211 1 122222 233555442221 1 25899999984 344444322
Q ss_pred cCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCc-
Q 048754 516 TGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGT- 594 (625)
Q Consensus 516 ~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~- 594 (625)
+ ......+. ..+++-+++..... ...++|.+|+ ++..+..+...+ .+........++
T Consensus 291 ----------~-~~~~~~~~-spDG~~l~f~sd~~---g~~~iy~~dl--~~g~~~~lt~~g-----~~~~~~~~SpDG~ 348 (433)
T PRK04922 291 ----------F-GIDTEPTW-APDGKSIYFTSDRG---GRPQIYRVAA--SGGSAERLTFQG-----NYNARASVSPDGK 348 (433)
T ss_pred ----------C-CCccceEE-CCCCCEEEEEECCC---CCceEEEEEC--CCCCeEEeecCC-----CCccCEEECCCCC
Confidence 0 01111122 22454444432111 1358999998 566777775322 122233334444
Q ss_pred EEEEEcCcCCCCCccCceEEEEccC
Q 048754 595 RVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 595 ~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
.|++..+.++ ...++++++.+
T Consensus 349 ~Ia~~~~~~~----~~~I~v~d~~~ 369 (433)
T PRK04922 349 KIAMVHGSGG----QYRIAVMDLST 369 (433)
T ss_pred EEEEEECCCC----ceeEEEEECCC
Confidence 4444433211 13677777654
No 181
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=69.32 E-value=1e+02 Score=28.88 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=30.4
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
++..+++++.+ ..+.+||+.+.+... .+.. . ...-.+.....++.+++.|+.. ..+.+||+.+
T Consensus 62 ~~~~l~~~~~~-----~~i~i~~~~~~~~~~-~~~~---~-~~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~ 124 (289)
T cd00200 62 DGTYLASGSSD-----KTIRLWDLETGECVR-TLTG---H-TSYVSSVAFSPDGRILSSSSRD------KTIKVWDVET 124 (289)
T ss_pred CCCEEEEEcCC-----CeEEEEEcCcccceE-EEec---c-CCcEEEEEEcCCCCEEEEecCC------CeEEEEECCC
Confidence 33456666642 368889987652111 2211 1 1111222233334566655521 3678888754
No 182
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=69.27 E-value=2e+02 Score=32.46 Aligned_cols=188 Identities=15% Similarity=0.146 Sum_probs=93.2
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeE---------------------EEEc
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTL---------------------SSLN 367 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~---------------------~~~~ 367 (625)
.+-+++++.||+.... +.++.+|..+-+..|+.-...... ....+.. ..+.
T Consensus 188 ~TPlvvgg~lYv~t~~-------~~V~ALDa~TGk~lW~~d~~~~~~-~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~ 259 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH-------NKVIALDAATGKEKWKFDPKLKTE-AGRQHQTCRGVSYYDAPAAAAGPAAPAAPADC 259 (764)
T ss_pred cCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCCcc-cccccccccceEEecCCccccccccccccccc
Confidence 4556789999998653 347888887766678743211110 0000100 0112
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCC--------C-CCCCCC-ccceEEEEcCCEEEEEcCcCCCC----
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSG--------G-APPLPR-SWHSSCIIEGSKLVVSGGCTDAG---- 433 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~--------~-~~p~~r-~~~~~~~~~~~~iyv~GG~~~~~---- 433 (625)
+++||+. ..+ ..++.+|..|++..|..-.+ + ..+..- ...+.-.+.++.+|+ |+....+
T Consensus 260 ~~rV~~~-T~D-----g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~ 332 (764)
T TIGR03074 260 ARRIILP-TSD-----ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTD 332 (764)
T ss_pred CCEEEEe-cCC-----CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-Eeccccccccc
Confidence 3455543 222 24778888888777753211 1 111111 112222333555555 5432211
Q ss_pred ceeceEEEEecCCCCCceEEcCCCC---CC-CC-----CCcc---eEEEEC--CcEEEEEcCCcCC--------CCcccc
Q 048754 434 VLLSDTYLLDLTTDKPMWREIPTSW---SP-PS-----RLGH---SLSVYG--RTKVLMFGGLAKS--------GHLRLR 491 (625)
Q Consensus 434 ~~~~~~~~~d~~~~~~~W~~~~~~~---~p-~~-----r~~~---~~~~~~--~~~l~v~GG~~~~--------~~~~~~ 491 (625)
.....+..||..|.+..|..-.... .+ .+ +.+. ....++ .+.+|+--|.... ......
T Consensus 333 ~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y 412 (764)
T TIGR03074 333 EPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKY 412 (764)
T ss_pred CCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccc
Confidence 2345688899999998897543210 00 00 1100 122232 2355553332211 001234
Q ss_pred cCceEEEEcCCCCCceeEee
Q 048754 492 SGESYTIDLGDEEPQWKQLE 511 (625)
Q Consensus 492 ~~~~~~~d~~~~~~~W~~~~ 511 (625)
.+.+..+|+++....|..-.
T Consensus 413 ~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQT 432 (764)
T ss_pred cceEEEEeCCCCceEEEecc
Confidence 67888999998878998654
No 183
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=68.73 E-value=1.1e+02 Score=29.42 Aligned_cols=139 Identities=14% Similarity=0.179 Sum_probs=71.8
Q ss_pred EcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc--EEEEEcCCcCCCCcccccCce
Q 048754 418 IEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT--KVLMFGGLAKSGHLRLRSGES 495 (625)
Q Consensus 418 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~--~l~v~GG~~~~~~~~~~~~~~ 495 (625)
.+++..+..||++ ..+-++|+.++. -.++.....| .| ++..+.+. .+++.|..+ +.+
T Consensus 81 sddgskVf~g~~D------k~~k~wDL~S~Q--~~~v~~Hd~p-vk---t~~wv~~~~~~cl~TGSWD---------KTl 139 (347)
T KOG0647|consen 81 SDDGSKVFSGGCD------KQAKLWDLASGQ--VSQVAAHDAP-VK---TCHWVPGMNYQCLVTGSWD---------KTL 139 (347)
T ss_pred ccCCceEEeeccC------CceEEEEccCCC--eeeeeecccc-ee---EEEEecCCCcceeEecccc---------cce
Confidence 3444555557754 356778987764 5565543222 22 23333331 356666664 455
Q ss_pred EEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcC
Q 048754 496 YTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNV 575 (625)
Q Consensus 496 ~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~ 575 (625)
..+|+. +=..+..+ .-+.|.+..-+. .-|.|++-. ...|.+|++.+...+.+.+.
T Consensus 140 KfWD~R----~~~pv~t~-----------~LPeRvYa~Dv~---~pm~vVata------~r~i~vynL~n~~te~k~~~- 194 (347)
T KOG0647|consen 140 KFWDTR----SSNPVATL-----------QLPERVYAADVL---YPMAVVATA------ERHIAVYNLENPPTEFKRIE- 194 (347)
T ss_pred eecccC----CCCeeeee-----------eccceeeehhcc---CceeEEEec------CCcEEEEEcCCCcchhhhhc-
Confidence 556655 22234433 123344333332 235555432 45788899854444444442
Q ss_pred CCCCCCCCCcceEEEECCcEEEEEcCcCCC
Q 048754 576 PGQPPKFAWGHSTCVVGGTRVLVLGGHTGE 605 (625)
Q Consensus 576 ~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~ 605 (625)
.|..-.-.+.+...++..+.+|+..+.
T Consensus 195 ---SpLk~Q~R~va~f~d~~~~alGsiEGr 221 (347)
T KOG0647|consen 195 ---SPLKWQTRCVACFQDKDGFALGSIEGR 221 (347)
T ss_pred ---CcccceeeEEEEEecCCceEeeeecce
Confidence 333333345556666677899987664
No 184
>PRK04043 tolB translocation protein TolB; Provisional
Probab=68.63 E-value=1.5e+02 Score=30.75 Aligned_cols=187 Identities=14% Similarity=0.147 Sum_probs=94.2
Q ss_pred CeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCcc
Q 048754 333 DTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSW 412 (625)
Q Consensus 333 ~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~ 412 (625)
++|++|+.+ .+=+++. .. ..........-++++|++.-...+ ..++|++|..++ .+.+++.. +. ...
T Consensus 214 ~Iyv~dl~t--g~~~~lt--~~-~g~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g--~~~~LT~~--~~-~d~ 280 (419)
T PRK04043 214 TLYKYNLYT--GKKEKIA--SS-QGMLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTK--TLTQITNY--PG-IDV 280 (419)
T ss_pred EEEEEECCC--CcEEEEe--cC-CCcEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCC--cEEEcccC--CC-ccC
Confidence 699999977 4445542 11 111111122234556665543322 358999999888 88888754 21 111
Q ss_pred ceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCccccc
Q 048754 413 HSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRS 492 (625)
Q Consensus 413 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~ 492 (625)
.....-++++||+..... + ..++|.+|+++.. .+++... +.+.. ...-+++.|.......... .....
T Consensus 281 ~p~~SPDG~~I~F~Sdr~--g--~~~Iy~~dl~~g~--~~rlt~~----g~~~~-~~SPDG~~Ia~~~~~~~~~-~~~~~ 348 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRL--G--YPNIFMKKLNSGS--VEQVVFH----GKNNS-SVSTYKNYIVYSSRETNNE-FGKNT 348 (419)
T ss_pred ccEECCCCCEEEEEECCC--C--CceEEEEECCCCC--eEeCccC----CCcCc-eECCCCCEEEEEEcCCCcc-cCCCC
Confidence 112223566777754321 1 2589999987765 6666532 11221 2222333444443322111 00012
Q ss_pred CceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 493 GESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 493 ~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
.+++++|++ +..++.+... ......... .+++.+++-... .....++.+++.
T Consensus 349 ~~I~v~d~~--~g~~~~LT~~--------------~~~~~p~~S-PDG~~I~f~~~~---~~~~~L~~~~l~ 400 (419)
T PRK04043 349 FNLYLISTN--SDYIRRLTAN--------------GVNQFPRFS-SDGGSIMFIKYL---GNQSALGIIRLN 400 (419)
T ss_pred cEEEEEECC--CCCeEECCCC--------------CCcCCeEEC-CCCCEEEEEEcc---CCcEEEEEEecC
Confidence 588999998 4467666532 111122222 356555443322 124578888883
No 185
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.46 E-value=1.1e+02 Score=28.95 Aligned_cols=97 Identities=19% Similarity=0.250 Sum_probs=59.3
Q ss_pred cEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCC
Q 048754 385 DVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRL 464 (625)
Q Consensus 385 ~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~ 464 (625)
.+-..|+.++++.|+.+- ..|...+++++ |+. +|+|=+ ...+|.++.++.+.-|..+... ...
T Consensus 34 ~~~avd~~sG~~~We~il-----g~RiE~sa~vv-gdf-VV~GCy------~g~lYfl~~~tGs~~w~f~~~~----~vk 96 (354)
T KOG4649|consen 34 IVIAVDPQSGNLIWEAIL-----GVRIECSAIVV-GDF-VVLGCY------SGGLYFLCVKTGSQIWNFVILE----TVK 96 (354)
T ss_pred eEEEecCCCCcEEeehhh-----CceeeeeeEEE-CCE-EEEEEc------cCcEEEEEecchhheeeeeehh----hhc
Confidence 467789999999999884 36777778777 544 555532 2468888988888889876532 111
Q ss_pred cceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCcee
Q 048754 465 GHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWK 508 (625)
Q Consensus 465 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~ 508 (625)
..+.+..+. .++-+|-.+ ..+|.+|+.+..-.|+
T Consensus 97 ~~a~~d~~~-glIycgshd---------~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 97 VRAQCDFDG-GLIYCGSHD---------GNFYALDPKTYGCVYK 130 (354)
T ss_pred cceEEcCCC-ceEEEecCC---------CcEEEecccccceEEe
Confidence 112222333 344444443 4667777775433454
No 186
>PRK00178 tolB translocation protein TolB; Provisional
Probab=67.37 E-value=1.6e+02 Score=30.58 Aligned_cols=140 Identities=13% Similarity=0.122 Sum_probs=67.4
Q ss_pred ceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccc
Q 048754 437 SDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAF 515 (625)
Q Consensus 437 ~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~ 515 (625)
..+|++|+++.+ -+.+.. .+ . .........++ +|++..... + ..++|++|+. +...+.+...
T Consensus 223 ~~l~~~~l~~g~--~~~l~~--~~-g-~~~~~~~SpDG~~la~~~~~~--g-----~~~Iy~~d~~--~~~~~~lt~~-- 285 (430)
T PRK00178 223 PRIFVQNLDTGR--REQITN--FE-G-LNGAPAWSPDGSKLAFVLSKD--G-----NPEIYVMDLA--SRQLSRVTNH-- 285 (430)
T ss_pred CEEEEEECCCCC--EEEccC--CC-C-CcCCeEECCCCCEEEEEEccC--C-----CceEEEEECC--CCCeEEcccC--
Confidence 479999987765 555543 11 1 11122233333 554432211 1 2589999998 4456555432
Q ss_pred cCcCCCCCCCCCCccceEEEEecCC-EEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCc
Q 048754 516 TGVGSQSAVVPPPRLDHVAVSMPCG-RIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGT 594 (625)
Q Consensus 516 ~~~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~ 594 (625)
+ ........ ..++ +|+.... . .....+|.+|+ .+..+..+...+ ..........++
T Consensus 286 ----------~-~~~~~~~~-spDg~~i~f~s~-~---~g~~~iy~~d~--~~g~~~~lt~~~-----~~~~~~~~Spdg 342 (430)
T PRK00178 286 ----------P-AIDTEPFW-GKDGRTLYFTSD-R---GGKPQIYKVNV--NGGRAERVTFVG-----NYNARPRLSADG 342 (430)
T ss_pred ----------C-CCcCCeEE-CCCCCEEEEEEC-C---CCCceEEEEEC--CCCCEEEeecCC-----CCccceEECCCC
Confidence 1 01111122 2244 4444321 1 12458999998 567777775322 112222333444
Q ss_pred EEEEEcCcCCCCCccCceEEEEccC
Q 048754 595 RVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 595 ~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
+.+++...... ..+++++++.+
T Consensus 343 ~~i~~~~~~~~---~~~l~~~dl~t 364 (430)
T PRK00178 343 KTLVMVHRQDG---NFHVAAQDLQR 364 (430)
T ss_pred CEEEEEEccCC---ceEEEEEECCC
Confidence 44444333221 23588888765
No 187
>PRK02889 tolB translocation protein TolB; Provisional
Probab=66.23 E-value=1.7e+02 Score=30.44 Aligned_cols=182 Identities=14% Similarity=0.145 Sum_probs=83.6
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR 463 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 463 (625)
..+|++|+.++ .-..+... + ....+....-+++++++..... + ..++|.+|+.+.. ...+... . ..
T Consensus 220 ~~I~~~dl~~g--~~~~l~~~--~-g~~~~~~~SPDG~~la~~~~~~--g--~~~Iy~~d~~~~~--~~~lt~~--~-~~ 285 (427)
T PRK02889 220 PVVYVHDLATG--RRRVVANF--K-GSNSAPAWSPDGRTLAVALSRD--G--NSQIYTVNADGSG--LRRLTQS--S-GI 285 (427)
T ss_pred cEEEEEECCCC--CEEEeecC--C-CCccceEECCCCCEEEEEEccC--C--CceEEEEECCCCC--cEECCCC--C-CC
Confidence 46999999887 44455432 2 1111222222555565543322 1 2578888876544 5565431 1 11
Q ss_pred CcceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEE
Q 048754 464 LGHSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542 (625)
Q Consensus 464 ~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 542 (625)
. .......++ .|+..... .+ ..++|.++.. +...+.+... ...........+++.
T Consensus 286 ~-~~~~wSpDG~~l~f~s~~--~g-----~~~Iy~~~~~--~g~~~~lt~~--------------g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 286 D-TEPFFSPDGRSIYFTSDR--GG-----APQIYRMPAS--GGAAQRVTFT--------------GSYNTSPRISPDGKL 341 (427)
T ss_pred C-cCeEEcCCCCEEEEEecC--CC-----CcEEEEEECC--CCceEEEecC--------------CCCcCceEECCCCCE
Confidence 1 122333333 44443221 11 2578888876 3355555422 011111222224544
Q ss_pred EEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEc
Q 048754 543 IIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCL 617 (625)
Q Consensus 543 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~ 617 (625)
+++.....+ ...++++|+ .+.....+...+ ........++++.+++....+.. ..++.+++
T Consensus 342 Ia~~s~~~g---~~~I~v~d~--~~g~~~~lt~~~------~~~~p~~spdg~~l~~~~~~~g~---~~l~~~~~ 402 (427)
T PRK02889 342 LAYISRVGG---AFKLYVQDL--ATGQVTALTDTT------RDESPSFAPNGRYILYATQQGGR---SVLAAVSS 402 (427)
T ss_pred EEEEEccCC---cEEEEEEEC--CCCCeEEccCCC------CccCceECCCCCEEEEEEecCCC---EEEEEEEC
Confidence 444332211 237999998 455666554211 11222334455666665543321 33455544
No 188
>PF08446 PAS_2: PAS fold; InterPro: IPR013654 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; GO: 0008020 G-protein coupled photoreceptor activity, 0006355 regulation of transcription, DNA-dependent, 0009584 detection of visible light, 0018298 protein-chromophore linkage; PDB: 3S7O_A 2O9B_A 3S7P_A 1ZTU_A 3S7N_A 3S7Q_A 2O9C_A 2OOL_A 3C2W_G 3NHQ_B ....
Probab=65.60 E-value=10 Score=30.68 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=31.7
Q ss_pred EEEecCCCCCCCEEEEehHHHHHhCCC---chhhcCCCCccccc
Q 048754 57 FVVADAFDPDFPIIYVNKVFEIFTGYR---ADEVLGRNCRFLQY 97 (625)
Q Consensus 57 i~~~d~~~~~g~i~~~N~~~~~~~G~~---~~e~~g~~~~~l~~ 97 (625)
++++|. .+++|+.++.....++|.+ .++++|++...++.
T Consensus 18 LLa~d~--~~~~I~~~S~N~~~~lg~~~~~~~~llG~~l~~ll~ 59 (110)
T PF08446_consen 18 LLALDP--DDLRIVQASENIAELLGIPPELPEELLGRPLSELLG 59 (110)
T ss_dssp EEEEET--TTTBEEEEETTHHHHHSS----HHHHTTCBHHHHSC
T ss_pred EEEEEC--CCCEEEEEcCCHHHHhCCccccchhhcccCHHHHhC
Confidence 344554 2689999999999999999 99999999988864
No 189
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=64.75 E-value=1.3e+02 Score=28.58 Aligned_cols=161 Identities=15% Similarity=0.059 Sum_probs=83.5
Q ss_pred CCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCc-eEEcccCCC----CCCccceeEE--EEcCCEEEEE
Q 048754 302 VEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPE-WRRVSVKSS----PPGRWGHTLS--SLNGSWLVVF 374 (625)
Q Consensus 302 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~-W~~~~~~~~----p~~r~~~~~~--~~~~~~iyv~ 374 (625)
+|-+-.|.+.++.++.+|..-. ..+.+.+||+.+.... +..|+.... |-...+++-. +++++-|.|+
T Consensus 65 Lp~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvI 138 (250)
T PF02191_consen 65 LPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVI 138 (250)
T ss_pred EeceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEE
Confidence 4555667777788888887654 3455999999986544 555532211 1111111111 1334446555
Q ss_pred ccCCCCCccccEEEEECCCC--CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceE
Q 048754 375 GGCGRQGLLNDVFVLDLDAK--QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWR 452 (625)
Q Consensus 375 GG~~~~~~~~~~~~~d~~t~--~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~ 452 (625)
=......-.--+-..|+.+- +-+|..- .+.+..+.+..++ | .+|+........ ..-.+.||..+++ =.
T Consensus 139 Yat~~~~g~ivvskld~~tL~v~~tw~T~----~~k~~~~naFmvC-G-vLY~~~s~~~~~--~~I~yafDt~t~~--~~ 208 (250)
T PF02191_consen 139 YATEDNNGNIVVSKLDPETLSVEQTWNTS----YPKRSAGNAFMVC-G-VLYATDSYDTRD--TEIFYAFDTYTGK--EE 208 (250)
T ss_pred EecCCCCCcEEEEeeCcccCceEEEEEec----cCchhhcceeeEe-e-EEEEEEECCCCC--cEEEEEEECCCCc--ee
Confidence 33322111112344565543 1156532 2455566666666 5 788887655433 2345778976555 33
Q ss_pred EcCCCCCCCCCCcceEEEEC--CcEEEEE
Q 048754 453 EIPTSWSPPSRLGHSLSVYG--RTKVLMF 479 (625)
Q Consensus 453 ~~~~~~~p~~r~~~~~~~~~--~~~l~v~ 479 (625)
.+... .+.+-..++++.++ +++||++
T Consensus 209 ~~~i~-f~~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 209 DVSIP-FPNPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred ceeee-eccccCceEeeeECCCCCeEEEE
Confidence 33321 23333345555553 3488887
No 190
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=61.22 E-value=1.5e+02 Score=28.23 Aligned_cols=103 Identities=26% Similarity=0.365 Sum_probs=62.3
Q ss_pred cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEE
Q 048754 419 EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTI 498 (625)
Q Consensus 419 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~ 498 (625)
+++.+|.--|... -+.+..+|+++.. -..... +|..-++-+++++++ +||..-=. ....++|
T Consensus 54 ~~g~LyESTG~yG----~S~l~~~d~~tg~--~~~~~~--l~~~~FgEGit~~~d-~l~qLTWk---------~~~~f~y 115 (264)
T PF05096_consen 54 DDGTLYESTGLYG----QSSLRKVDLETGK--VLQSVP--LPPRYFGEGITILGD-KLYQLTWK---------EGTGFVY 115 (264)
T ss_dssp ETTEEEEEECSTT----EEEEEEEETTTSS--EEEEEE---TTT--EEEEEEETT-EEEEEESS---------SSEEEEE
T ss_pred CCCEEEEeCCCCC----cEEEEEEECCCCc--EEEEEE--CCccccceeEEEECC-EEEEEEec---------CCeEEEE
Confidence 6778888777543 2578899998865 332221 566677788888877 99887322 3678899
Q ss_pred EcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 499 DLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 499 d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
|.+ +...+... +.+..+=..+.- +..|++--| ++.++.+|+
T Consensus 116 d~~----tl~~~~~~------------~y~~EGWGLt~d-g~~Li~SDG-------S~~L~~~dP 156 (264)
T PF05096_consen 116 DPN----TLKKIGTF------------PYPGEGWGLTSD-GKRLIMSDG-------SSRLYFLDP 156 (264)
T ss_dssp ETT----TTEEEEEE------------E-SSS--EEEEC-SSCEEEE-S-------SSEEEEE-T
T ss_pred ccc----cceEEEEE------------ecCCcceEEEcC-CCEEEEECC-------ccceEEECC
Confidence 987 45555554 222334444433 667777666 458888888
No 191
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.65 E-value=1.4e+02 Score=30.11 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=52.1
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR 463 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 463 (625)
+.+-++|+.|. .-...-. ..+.--+++..-+..=||++|..++ .+++||....+.-..++.......|.
T Consensus 216 nkiki~dlet~--~~vssy~----a~~~~wSC~wDlde~h~IYaGl~nG-----~VlvyD~R~~~~~~~e~~a~~t~~pv 284 (463)
T KOG1645|consen 216 NKIKIMDLETS--CVVSSYI----AYNQIWSCCWDLDERHVIYAGLQNG-----MVLVYDMRQPEGPLMELVANVTINPV 284 (463)
T ss_pred ceEEEEecccc--eeeehee----ccCCceeeeeccCCcceeEEeccCc-----eEEEEEccCCCchHhhhhhhhccCcc
Confidence 45777888776 2211111 1122234444445577888896543 68999974332111111110011111
Q ss_pred CcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeec
Q 048754 464 LGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECN 513 (625)
Q Consensus 464 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~ 513 (625)
|....+..++++-+||.-... +..+-.|++......|..+...
T Consensus 285 --~~i~~~~~n~~f~~gglLv~~-----lt~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 285 --HKIAPVQPNKIFTSGGLLVFA-----LTVLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred --eeecccCccccccccceEEee-----ehhhhhhhhhccccCCCccccc
Confidence 333334444777777764322 2333333333224466665544
No 192
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=59.55 E-value=3.6 Score=40.86 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=33.3
Q ss_pred ccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchh
Q 048754 190 DQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRD 232 (625)
Q Consensus 190 ~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~ 232 (625)
.....++|.+..++++|+++++++|++ ++.+|..+..++++++
T Consensus 16 ~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~ 59 (333)
T TIGR02966 16 PDAVVVLDEEGQIEWCNPAAERLLGLRWPDDLGQRITNLIRHPE 59 (333)
T ss_pred cCcEEEECCCCcEEEEcHHHHHHhCCChHHHcCCcHHHHccCHH
Confidence 444445588888889999999999998 7788777777766543
No 193
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=59.47 E-value=4.7 Score=44.42 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=36.6
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCccccc
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQY 97 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~ 97 (625)
..--++++.. +|+|+||++....++||..+|+.|.++.++.+
T Consensus 104 lDGF~fvV~c---dG~IvyVSeSVT~~L~y~QsDL~~qSly~ilh 145 (803)
T KOG3561|consen 104 LDGFLFVVNC---DGRIVYVSESVTSVLGYLQSDLMGQSLYDILH 145 (803)
T ss_pred hcCeEEEEec---CceEEEEecchHHhhCcCHHHHhcchHHHhcC
Confidence 4445677888 89999999999999999999999999888853
No 194
>smart00284 OLF Olfactomedin-like domains.
Probab=59.36 E-value=1.6e+02 Score=27.93 Aligned_cols=76 Identities=14% Similarity=-0.044 Sum_probs=40.2
Q ss_pred CEEEEEccCCCCCccccEEEEECCCC--CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 369 SWLVVFGGCGRQGLLNDVFVLDLDAK--QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 369 ~~iyv~GG~~~~~~~~~~~~~d~~t~--~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
+++|+..+.+. ..+.++.|..... ..++.+.- ..|.+-.+...++++ +.+|..-. .+..+..||+.+
T Consensus 35 ~~~wv~~~~~~--~~~~v~ey~~~~~f~~~~~~~~~--~Lp~~~~GtG~VVYn-gslYY~~~------~s~~iiKydL~t 103 (255)
T smart00284 35 SLYWYMPLNTR--VLRSVREYSSMSDFQMGKNPTDH--PLPHAGQGTGVVVYN-GSLYFNKF------NSHDICRFDLTT 103 (255)
T ss_pred ceEEEEccccC--CCcEEEEecCHHHHhccCCceEE--ECCCccccccEEEEC-ceEEEEec------CCccEEEEECCC
Confidence 46888766531 1234555543211 00222211 125555666666774 46776432 236799999988
Q ss_pred CCCc-eEEcC
Q 048754 447 DKPM-WREIP 455 (625)
Q Consensus 447 ~~~~-W~~~~ 455 (625)
.+.. +..++
T Consensus 104 ~~v~~~~~Lp 113 (255)
T smart00284 104 ETYQKEPLLN 113 (255)
T ss_pred CcEEEEEecC
Confidence 8753 45555
No 195
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=59.26 E-value=5.3 Score=29.27 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=30.3
Q ss_pred cCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhh
Q 048754 197 SGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVAS 235 (625)
Q Consensus 197 ~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~ 235 (625)
+.+..++++|+++++++|++ .+++|..+...+++.+...
T Consensus 9 d~~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 48 (103)
T cd00130 9 DLDGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREE 48 (103)
T ss_pred CCCCcEEEECHHHHHHhCCCHHHHcCccHHHhcCCccchH
Confidence 55566679999999999999 7788777777777766543
No 196
>TIGR00229 sensory_box PAS domain S-box. The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator.
Probab=59.09 E-value=6 Score=30.70 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=30.7
Q ss_pred ccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhh
Q 048754 194 QYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 194 ~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~ 234 (625)
.+++.+..++++|+++++++|++ .+++|..+...+++.+..
T Consensus 17 ~~~d~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 58 (124)
T TIGR00229 17 IVIDLEGNILYVNPAFEEIFGYSAEELIGRNVLELIPEEDRE 58 (124)
T ss_pred EEEcCCCcEEEEchHHHHHhCCChHHhcCcchhhhcChhhhH
Confidence 34466677779999999999999 677777776666665443
No 197
>PRK03629 tolB translocation protein TolB; Provisional
Probab=58.92 E-value=2.3e+02 Score=29.50 Aligned_cols=198 Identities=16% Similarity=0.153 Sum_probs=88.8
Q ss_pred EEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCc
Q 048754 371 LVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPM 450 (625)
Q Consensus 371 iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~ 450 (625)
+|+....+ ..+...+|+.|.+.. .-..+... +. ........-+++.+.... .... ...++++|+.+..
T Consensus 167 ayv~~~~~-~~~~~~l~~~d~dg~--~~~~lt~~--~~-~~~~p~wSPDG~~la~~s-~~~g---~~~i~i~dl~~G~-- 234 (429)
T PRK03629 167 AYVVQTNG-GQFPYELRVSDYDGY--NQFVVHRS--PQ-PLMSPAWSPDGSKLAYVT-FESG---RSALVIQTLANGA-- 234 (429)
T ss_pred EEEEeeCC-CCcceeEEEEcCCCC--CCEEeecC--CC-ceeeeEEcCCCCEEEEEE-ecCC---CcEEEEEECCCCC--
Confidence 45554322 234568999998754 22333322 11 111112222444443322 1111 2468889986654
Q ss_pred eEEcCCCCCCCCCCcceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCc
Q 048754 451 WREIPTSWSPPSRLGHSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPR 529 (625)
Q Consensus 451 W~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r 529 (625)
-..+.. .+.. ........++ +|++..... + ..++|++|+++ ...+++... + ..
T Consensus 235 ~~~l~~--~~~~--~~~~~~SPDG~~La~~~~~~--g-----~~~I~~~d~~t--g~~~~lt~~------------~-~~ 288 (429)
T PRK03629 235 VRQVAS--FPRH--NGAPAFSPDGSKLAFALSKT--G-----SLNLYVMDLAS--GQIRQVTDG------------R-SN 288 (429)
T ss_pred eEEccC--CCCC--cCCeEECCCCCEEEEEEcCC--C-----CcEEEEEECCC--CCEEEccCC------------C-CC
Confidence 444442 1111 1122333333 555543221 1 24699999983 355554322 1 01
Q ss_pred cceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCcc
Q 048754 530 LDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVL 609 (625)
Q Consensus 530 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~ 609 (625)
. .......+++.+++..... ...++|.+|+ ++..-.++...+. ........++++.+++.+.... .
T Consensus 289 ~-~~~~wSPDG~~I~f~s~~~---g~~~Iy~~d~--~~g~~~~lt~~~~-----~~~~~~~SpDG~~Ia~~~~~~g---~ 354 (429)
T PRK03629 289 N-TEPTWFPDSQNLAYTSDQA---GRPQVYKVNI--NGGAPQRITWEGS-----QNQDADVSSDGKFMVMVSSNGG---Q 354 (429)
T ss_pred c-CceEECCCCCEEEEEeCCC---CCceEEEEEC--CCCCeEEeecCCC-----CccCEEECCCCCEEEEEEccCC---C
Confidence 1 1122223555444433211 1358999998 4555556542111 1122333444455555443322 2
Q ss_pred CceEEEEccCC
Q 048754 610 NELHELCLASK 620 (625)
Q Consensus 610 ~d~~~~~~~~~ 620 (625)
.+++++++.+.
T Consensus 355 ~~I~~~dl~~g 365 (429)
T PRK03629 355 QHIAKQDLATG 365 (429)
T ss_pred ceEEEEECCCC
Confidence 46777877543
No 198
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=57.74 E-value=1.1e+02 Score=25.41 Aligned_cols=83 Identities=12% Similarity=0.176 Sum_probs=49.0
Q ss_pred EECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccC-CCCCCccceeEEEEcCCEEEEEccCCCC-CccccEEEEE
Q 048754 313 AAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVK-SSPPGRWGHTLSSLNGSWLVVFGGCGRQ-GLLNDVFVLD 390 (625)
Q Consensus 313 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d 390 (625)
.+++-+|...-. ......-+.+||+.+ -+|+.+..+ ...........+.+.| +|-++.-.... ...-++|+++
T Consensus 3 cinGvly~~a~~--~~~~~~~IvsFDv~~--E~f~~i~~P~~~~~~~~~~~L~~~~G-~L~~v~~~~~~~~~~~~iWvLe 77 (129)
T PF08268_consen 3 CINGVLYWLAWS--EDSDNNVIVSFDVRS--EKFRFIKLPEDPYSSDCSSTLIEYKG-KLALVSYNDQGEPDSIDIWVLE 77 (129)
T ss_pred EECcEEEeEEEE--CCCCCcEEEEEEcCC--ceEEEEEeeeeeccccCccEEEEeCC-eEEEEEecCCCCcceEEEEEee
Confidence 467777776654 222344588999998 589888644 2233345556666644 56555433222 2235788885
Q ss_pred -CCCCCCEEEEcC
Q 048754 391 -LDAKQPTWIEVS 402 (625)
Q Consensus 391 -~~t~~~~W~~~~ 402 (625)
..+. .|.+..
T Consensus 78 D~~k~--~Wsk~~ 88 (129)
T PF08268_consen 78 DYEKQ--EWSKKH 88 (129)
T ss_pred ccccc--eEEEEE
Confidence 4444 898664
No 199
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.32 E-value=1.4e+02 Score=30.16 Aligned_cols=169 Identities=13% Similarity=0.048 Sum_probs=75.0
Q ss_pred ECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCc-cccEEEEECC
Q 048754 314 AGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGL-LNDVFVLDLD 392 (625)
Q Consensus 314 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~d~~ 392 (625)
.++.=||++|..... +++||+....+-...+. ..+... .-|..+.+..+++|-.||.-.... --..|.+-..
T Consensus 245 lde~h~IYaGl~nG~-----VlvyD~R~~~~~~~e~~-a~~t~~-pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s 317 (463)
T KOG1645|consen 245 LDERHVIYAGLQNGM-----VLVYDMRQPEGPLMELV-ANVTIN-PVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFS 317 (463)
T ss_pred cCCcceeEEeccCce-----EEEEEccCCCchHhhhh-hhhccC-cceeecccCccccccccceEEeeehhhhhhhhhcc
Confidence 356778888864433 89999875322221111 111111 113444455667888888632111 1123444444
Q ss_pred CCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEE-EecCCCCCceEEcCCC-CCCC-CCCcc--e
Q 048754 393 AKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYL-LDLTTDKPMWREIPTS-WSPP-SRLGH--S 467 (625)
Q Consensus 393 t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-~d~~~~~~~W~~~~~~-~~p~-~r~~~--~ 467 (625)
.. .|..+....+|.+-...+..... +.+.+.--.+.+.+.+..+.. -|..++...|.+-+.. +.+. ++..- -
T Consensus 318 ~~--~~p~vlele~pG~cismqy~~~s-nh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai 394 (463)
T KOG1645|consen 318 AE--CLPCVLELEPPGICISMQYHGVS-NHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAI 394 (463)
T ss_pred cc--CCCcccccCCCcceeeeeecCcc-ceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccce
Confidence 44 77765544445443332322221 233332221122111222222 1222344445544332 2222 22111 1
Q ss_pred EEEECCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 468 LSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 468 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
..+.+++.|+++|+. .+++...|+.
T Consensus 395 ~~~~~nn~iv~~gd~---------tn~lil~D~~ 419 (463)
T KOG1645|consen 395 RAVEDNNYIVVVGDS---------TNELILQDPH 419 (463)
T ss_pred eccccccEEEEecCC---------cceeEEeccc
Confidence 123345578888883 3677777776
No 200
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=57.27 E-value=1.4e+02 Score=26.61 Aligned_cols=72 Identities=11% Similarity=0.228 Sum_probs=41.2
Q ss_pred CCCCCCCCeEEEeccCCCCceEEcccCCC---CCCccceeEEEEcCCEEEEEccC-CCCCccccEEEEECCCCCCEEEEc
Q 048754 326 VNMQPMDDTFVLNLDAANPEWRRVSVKSS---PPGRWGHTLSSLNGSWLVVFGGC-GRQGLLNDVFVLDLDAKQPTWIEV 401 (625)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~---p~~r~~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~~d~~t~~~~W~~~ 401 (625)
...+...++|.+|+.. ..|..+...+. -.|. .....-+.+-++++|.. +.-.--..+|+|++.++ .-..+
T Consensus 82 a~eEgiGkIYIkn~~~--~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg--~~~~l 155 (200)
T PF15525_consen 82 AEEEGIGKIYIKNLNN--NNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTG--NLTEL 155 (200)
T ss_pred cccccceeEEEEecCC--CceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceEccCCeEEEEEccCC--ceeEe
Confidence 3345678899999988 56665543332 2333 23333334445555532 11111357999999999 66666
Q ss_pred CC
Q 048754 402 SG 403 (625)
Q Consensus 402 ~~ 403 (625)
..
T Consensus 156 y~ 157 (200)
T PF15525_consen 156 YE 157 (200)
T ss_pred ee
Confidence 54
No 201
>PRK02889 tolB translocation protein TolB; Provisional
Probab=55.14 E-value=2.7e+02 Score=29.02 Aligned_cols=185 Identities=16% Similarity=0.171 Sum_probs=82.1
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR 463 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 463 (625)
..+|+.|.... ....+... +.. .......-+++.+++ ...... ...+|++|+.+.. =..+.. .+ .
T Consensus 176 ~~L~~~D~dG~--~~~~l~~~--~~~-v~~p~wSPDG~~la~-~s~~~~---~~~I~~~dl~~g~--~~~l~~--~~-g- 240 (427)
T PRK02889 176 YQLQISDADGQ--NAQSALSS--PEP-IISPAWSPDGTKLAY-VSFESK---KPVVYVHDLATGR--RRVVAN--FK-G- 240 (427)
T ss_pred cEEEEECCCCC--CceEeccC--CCC-cccceEcCCCCEEEE-EEccCC---CcEEEEEECCCCC--EEEeec--CC-C-
Confidence 56888888654 33444322 111 111122224444443 322211 2468999987654 334432 11 1
Q ss_pred CcceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEE
Q 048754 464 LGHSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542 (625)
Q Consensus 464 ~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 542 (625)
...+.....++ +|++..... + ..++|.+|+.. ...+++... . ........ ..+++-
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~--g-----~~~Iy~~d~~~--~~~~~lt~~------------~-~~~~~~~w-SpDG~~ 297 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRD--G-----NSQIYTVNADG--SGLRRLTQS------------S-GIDTEPFF-SPDGRS 297 (427)
T ss_pred CccceEECCCCCEEEEEEccC--C-----CceEEEEECCC--CCcEECCCC------------C-CCCcCeEE-cCCCCE
Confidence 11122233333 555433221 1 26899999873 344444321 0 11111222 225544
Q ss_pred EEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccC
Q 048754 543 IIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 543 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
+++..... ...++|.+++ +......+...+ .+.......++++.+++....+. ...++++++.+
T Consensus 298 l~f~s~~~---g~~~Iy~~~~--~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g---~~~I~v~d~~~ 361 (427)
T PRK02889 298 IYFTSDRG---GAPQIYRMPA--SGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGG---AFKLYVQDLAT 361 (427)
T ss_pred EEEEecCC---CCcEEEEEEC--CCCceEEEecCC-----CCcCceEECCCCCEEEEEEccCC---cEEEEEEECCC
Confidence 44432111 2458999998 456666665322 11122333344444444432221 13577777654
No 202
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=52.43 E-value=2e+02 Score=26.75 Aligned_cols=22 Identities=9% Similarity=0.160 Sum_probs=13.9
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+ ..+.+||+.+.
T Consensus 104 ~~~~~~~~~~~-----~~i~~~~~~~~ 125 (289)
T cd00200 104 DGRILSSSSRD-----KTIKVWDVETG 125 (289)
T ss_pred CCCEEEEecCC-----CeEEEEECCCc
Confidence 34566666522 36888998765
No 203
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=51.45 E-value=4.9e+02 Score=30.98 Aligned_cols=165 Identities=10% Similarity=-0.002 Sum_probs=78.7
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCC--------CCC---CCCccceEEEE-cCCEEEEEcCcCCCCce
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGG--------APP---LPRSWHSSCII-EGSKLVVSGGCTDAGVL 435 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~--------~~p---~~r~~~~~~~~-~~~~iyv~GG~~~~~~~ 435 (625)
++.+||.... .+.+++||+.++ ....+... ..+ ....-+..+.. +++.+||....
T Consensus 694 ~g~LyVad~~-----~~~I~v~d~~~g--~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------ 760 (1057)
T PLN02919 694 NEKVYIAMAG-----QHQIWEYNISDG--VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------ 760 (1057)
T ss_pred CCeEEEEECC-----CCeEEEEECCCC--eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------
Confidence 5678887542 245888998776 44332210 000 00111122222 34568886542
Q ss_pred eceEEEEecCCCCCceEEcCCC-------------CC-CCCC--CcceEEEECCcEEEEEcCCcCCCCcccccCceEEEE
Q 048754 436 LSDTYLLDLTTDKPMWREIPTS-------------WS-PPSR--LGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTID 499 (625)
Q Consensus 436 ~~~~~~~d~~~~~~~W~~~~~~-------------~~-p~~r--~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d 499 (625)
.+.+.+||+++....+..-... +. .... .-.++++..++.+||.... ...+.+||
T Consensus 761 n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~---------N~rIrviD 831 (1057)
T PLN02919 761 SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY---------NHKIKKLD 831 (1057)
T ss_pred CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC---------CCEEEEEE
Confidence 2578889986654222110000 00 0000 1124444455578887543 36788999
Q ss_pred cCCCCCceeEeeeccccCcCCCCCCCCCCc--cceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 500 LGDEEPQWKQLECNAFTGVGSQSAVVPPPR--LDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 500 ~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r--~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
+. +.....+...+.... ..|...... ..+.++...+++|||.-.. .+.|.++|+.
T Consensus 832 ~~--tg~v~tiaG~G~~G~--~dG~~~~a~l~~P~GIavd~dG~lyVaDt~------Nn~Irvid~~ 888 (1057)
T PLN02919 832 PA--TKRVTTLAGTGKAGF--KDGKALKAQLSEPAGLALGENGRLFVADTN------NSLIRYLDLN 888 (1057)
T ss_pred CC--CCeEEEEeccCCcCC--CCCcccccccCCceEEEEeCCCCEEEEECC------CCEEEEEECC
Confidence 87 445555543321100 011111111 2233344447789988543 4577788883
No 204
>PRK13557 histidine kinase; Provisional
Probab=50.75 E-value=7.7 Score=41.78 Aligned_cols=35 Identities=9% Similarity=0.117 Sum_probs=28.9
Q ss_pred CCCCCcccccccccccCc-hhHHHHhhhcccCchhh
Q 048754 199 GHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDV 233 (625)
Q Consensus 199 ~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~ 233 (625)
+..++|+|+++++++||+ ++++|.++..++++++.
T Consensus 52 ~g~i~~~N~a~~~~~G~~~~e~~g~~~~~l~~~~~~ 87 (540)
T PRK13557 52 DNPIVFANRAFLEMTGYAAEEIIGNNCRFLQGPETD 87 (540)
T ss_pred CCCEEEEcHHHHHHhCCCHHHhcCCChHhhcCCCCC
Confidence 455679999999999999 88898888877776543
No 205
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=50.66 E-value=2.6e+02 Score=27.62 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=52.4
Q ss_pred ccEEEEECCCC---CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCC
Q 048754 384 NDVFVLDLDAK---QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSP 460 (625)
Q Consensus 384 ~~~~~~d~~t~---~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p 460 (625)
..+++|++... ..++..+.....+.+ -.+.+.+ ++++++.-| +.+.+|++.... ++..... ..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~--V~ai~~~-~~~lv~~~g--------~~l~v~~l~~~~-~l~~~~~--~~ 127 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGP--VTAICSF-NGRLVVAVG--------NKLYVYDLDNSK-TLLKKAF--YD 127 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS---EEEEEEE-TTEEEEEET--------TEEEEEEEETTS-SEEEEEE--E-
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCc--ceEhhhh-CCEEEEeec--------CEEEEEEccCcc-cchhhhe--ec
Confidence 66889998773 124554432211222 2455566 446666555 467788875544 4666554 22
Q ss_pred CCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEE--EEcCCCCCceeEeeec
Q 048754 461 PSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYT--IDLGDEEPQWKQLECN 513 (625)
Q Consensus 461 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~--~d~~~~~~~W~~~~~~ 513 (625)
.+-+..+..+.++ .|+ +|.. ...+.. |+.+ ..+-..+...
T Consensus 128 ~~~~i~sl~~~~~-~I~-vgD~---------~~sv~~~~~~~~--~~~l~~va~d 169 (321)
T PF03178_consen 128 SPFYITSLSVFKN-YIL-VGDA---------MKSVSLLRYDEE--NNKLILVARD 169 (321)
T ss_dssp BSSSEEEEEEETT-EEE-EEES---------SSSEEEEEEETT--TE-EEEEEEE
T ss_pred ceEEEEEEecccc-EEE-EEEc---------ccCEEEEEEEcc--CCEEEEEEec
Confidence 2334455555655 554 4433 244444 4554 3445566554
No 206
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=50.66 E-value=4.2e+02 Score=30.04 Aligned_cols=130 Identities=18% Similarity=0.131 Sum_probs=67.9
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceE----EE-----------------EcCCEEE
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSS----CI-----------------IEGSKLV 424 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~----~~-----------------~~~~~iy 424 (625)
+.++.+|+.... +.++.+|..|++..|+.-+..... ....|.. +. ..++++|
T Consensus 192 vvgg~lYv~t~~------~~V~ALDa~TGk~lW~~d~~~~~~-~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~ 264 (764)
T TIGR03074 192 KVGDTLYLCTPH------NKVIALDAATGKEKWKFDPKLKTE-AGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRII 264 (764)
T ss_pred EECCEEEEECCC------CeEEEEECCCCcEEEEEcCCCCcc-cccccccccceEEecCCcccccccccccccccCCEEE
Confidence 347789998552 468999999988889865432111 1001100 01 1123455
Q ss_pred EEcCcCCCCceeceEEEEecCCCCCceEEcCC---------CCCCCC--CCcceEEEECCcEEEEEcCCcCCC-Cccccc
Q 048754 425 VSGGCTDAGVLLSDTYLLDLTTDKPMWREIPT---------SWSPPS--RLGHSLSVYGRTKVLMFGGLAKSG-HLRLRS 492 (625)
Q Consensus 425 v~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~---------~~~p~~--r~~~~~~~~~~~~l~v~GG~~~~~-~~~~~~ 492 (625)
+ +.. -..++.+|.++.+..|..-.. ...+.. ....+.++.++ .+|+ |+...++ ......
T Consensus 265 ~-~T~------Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIv-G~~v~d~~~~~~~~ 335 (764)
T TIGR03074 265 L-PTS------DARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVI-GGRVADNYSTDEPS 335 (764)
T ss_pred E-ecC------CCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECC-EEEE-EecccccccccCCC
Confidence 4 221 125778888888878863211 011111 12233344544 5555 5432221 111124
Q ss_pred CceEEEEcCCCCCceeEee
Q 048754 493 GESYTIDLGDEEPQWKQLE 511 (625)
Q Consensus 493 ~~~~~~d~~~~~~~W~~~~ 511 (625)
..+..||.++....|+.-.
T Consensus 336 G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 336 GVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred cEEEEEECCCCcEeeEEec
Confidence 6788899998777887653
No 207
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=50.26 E-value=5.1 Score=40.36 Aligned_cols=47 Identities=9% Similarity=-0.011 Sum_probs=36.7
Q ss_pred hhccccccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCc
Q 048754 184 NCNQQYDQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTP 230 (625)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~ 230 (625)
.+.+.......++|.+..++++|+++++++|++ ++++|..+.++++.
T Consensus 11 ~il~~~~~gi~~~d~~~~i~~~N~a~~~~~g~~~~~~~g~~~~~~~~~ 58 (348)
T PRK11073 11 QILNSLINSILLLDDDLAIHYANPAAQQLLAQSSRKLFGTPLPELLSY 58 (348)
T ss_pred HHHhcCcCeEEEECCCCeEeeEcHHHHHHhCCCHHHHcCCCHHHHcCc
Confidence 344555566666788888889999999999999 77888887777664
No 208
>PF09884 DUF2111: Uncharacterized protein conserved in archaea (DUF2111); InterPro: IPR012029 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, members of PIRSF036667 from PIRSF possess a domain homologous to these proteins fused within a signal transduction sensor protein containing PAS/PAC and GAF domains. Therefore, it is possible that members of this family are involved in signal transduction (possibly as a sensor).
Probab=49.54 E-value=1e+02 Score=23.24 Aligned_cols=45 Identities=29% Similarity=0.408 Sum_probs=32.4
Q ss_pred HHHHHHHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEE
Q 048754 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164 (625)
Q Consensus 116 ~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~ 164 (625)
-+.+.+++++... ..-..|...=+-+.+.|+++.+|++++.+|+.
T Consensus 36 VLe~vl~~g~v~r----~~P~~G~Y~G~PViV~PI~~~~g~viaAiGvV 80 (84)
T PF09884_consen 36 VLEEVLETGKVIR----VTPIEGPYKGVPVIVAPIKDEDGEVIAAIGVV 80 (84)
T ss_pred HHHHHHHcCCEEE----eccCCcccCCeeEEEEEEEcCCCCEEEEEEEE
Confidence 3556666665432 23346766667788999999999999999975
No 209
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=49.33 E-value=16 Score=39.54 Aligned_cols=41 Identities=15% Similarity=0.078 Sum_probs=30.5
Q ss_pred ccccccccCCCCCCcccccccccccCc---hhHHHHhhhcccCc
Q 048754 190 DQSAQYFSGGHSPLSQHQDICGILQLS---DEVLAHNILSRLTP 230 (625)
Q Consensus 190 ~~~~~~~~~~~~~~~~n~~~~~~~g~~---~e~~~~~~~~~~~~ 230 (625)
.+...++|.++.++++|+++++++|++ ++.+|..+.+.+++
T Consensus 232 ~egii~~D~~g~I~~~N~~a~~ll~~~~~~~~~~g~~~~~~~~~ 275 (545)
T PRK15053 232 YEGLIAVDPHGYITAINRNARKMLGLSSPGRQWLGKPIAEVVRP 275 (545)
T ss_pred CceEEEECCCCeEEeecHHHHHHhCCCCcchhhcCCcHHHhCCC
Confidence 333445588888889999999999986 35777777666654
No 210
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=48.68 E-value=5.1 Score=42.91 Aligned_cols=47 Identities=6% Similarity=0.041 Sum_probs=37.6
Q ss_pred ccccccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchh
Q 048754 186 NQQYDQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRD 232 (625)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~ 232 (625)
.+.+.....++|.++.++++|+++++++|++ ++++|.++.++++...
T Consensus 86 L~sm~eGVi~vD~~G~I~~iN~aA~~Llg~~~eel~Gk~i~eli~~~~ 133 (520)
T PRK10820 86 LEALPEPVLSIDMKGKVELANPASCQLFGQSEEKLRNHTAAQLINGFN 133 (520)
T ss_pred HHhCCCcEEEECCCCeeeHhHHHHHHHHCcCHHHHCCCcHHHHcCcch
Confidence 3444555666688888889999999999999 7888888888887644
No 211
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=48.56 E-value=3.2e+02 Score=28.11 Aligned_cols=242 Identities=14% Similarity=0.115 Sum_probs=113.2
Q ss_pred CeEEEeccCCCCceEEcccCCCCCCcccee-EEEEcCCEEEEEccCCCCC------ccccEEEEECCCCCCEEEEcCCCC
Q 048754 333 DTFVLNLDAANPEWRRVSVKSSPPGRWGHT-LSSLNGSWLVVFGGCGRQG------LLNDVFVLDLDAKQPTWIEVSGGA 405 (625)
Q Consensus 333 ~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~-~~~~~~~~iyv~GG~~~~~------~~~~~~~~d~~t~~~~W~~~~~~~ 405 (625)
.++++|+.+ ++.. . ...+ ...++ ++-..+++.+++....... ....+++..+.+....=..+-...
T Consensus 151 ~l~v~Dl~t--g~~l--~-d~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~ 223 (414)
T PF02897_consen 151 TLRVFDLET--GKFL--P-DGIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEP 223 (414)
T ss_dssp EEEEEETTT--TEEE--E-EEEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-T
T ss_pred EEEEEECCC--CcCc--C-Cccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeec
Confidence 488888887 3222 1 1112 22223 3334454566666554432 267889888877622211222221
Q ss_pred CCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC---CCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCC
Q 048754 406 PPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD---KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGL 482 (625)
Q Consensus 406 ~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~---~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~ 482 (625)
.+..........-+++.++|.-+.. .. .++++.++.... ...|..+.. +..-..+.+... ++.+|+....
T Consensus 224 ~~~~~~~~~~~s~d~~~l~i~~~~~--~~-~s~v~~~d~~~~~~~~~~~~~l~~---~~~~~~~~v~~~-~~~~yi~Tn~ 296 (414)
T PF02897_consen 224 DEPFWFVSVSRSKDGRYLFISSSSG--TS-ESEVYLLDLDDGGSPDAKPKLLSP---REDGVEYYVDHH-GDRLYILTND 296 (414)
T ss_dssp TCTTSEEEEEE-TTSSEEEEEEESS--SS-EEEEEEEECCCTTTSS-SEEEEEE---SSSS-EEEEEEE-TTEEEEEE-T
T ss_pred CCCcEEEEEEecCcccEEEEEEEcc--cc-CCeEEEEeccccCCCcCCcEEEeC---CCCceEEEEEcc-CCEEEEeeCC
Confidence 1111122222222444444433322 11 478999998664 445888753 111111222233 4488887653
Q ss_pred cCCCCcccccCceEEEEcCCCCC-ceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEE
Q 048754 483 AKSGHLRLRSGESYTIDLGDEEP-QWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLL 561 (625)
Q Consensus 483 ~~~~~~~~~~~~~~~~d~~~~~~-~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~ 561 (625)
.. ....+..+++..... .|..+-.. +.....-..+...+++|++.-=. .....|.++
T Consensus 297 ~a------~~~~l~~~~l~~~~~~~~~~~l~~------------~~~~~~l~~~~~~~~~Lvl~~~~----~~~~~l~v~ 354 (414)
T PF02897_consen 297 DA------PNGRLVAVDLADPSPAEWWTVLIP------------EDEDVSLEDVSLFKDYLVLSYRE----NGSSRLRVY 354 (414)
T ss_dssp T-------TT-EEEEEETTSTSGGGEEEEEE--------------SSSEEEEEEEEETTEEEEEEEE----TTEEEEEEE
T ss_pred CC------CCcEEEEecccccccccceeEEcC------------CCCceeEEEEEEECCEEEEEEEE----CCccEEEEE
Confidence 21 136788888885321 46643221 22222223333337887776322 125689999
Q ss_pred eCCCCCCCeEEEcCCCCCCCCCCcceEEEEC---CcEEE-EEcCcCCCCCccCceEEEEccCCC
Q 048754 562 DPSEEKPSWRILNVPGQPPKFAWGHSTCVVG---GTRVL-VLGGHTGEEWVLNELHELCLASKQ 621 (625)
Q Consensus 562 d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~---~~~i~-i~GG~~~~~~~~~d~~~~~~~~~~ 621 (625)
++ . ..|..... ..|. .+....... ++.++ .+.++.. -..+|.||+.+.+
T Consensus 355 ~~--~-~~~~~~~~--~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~----P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 355 DL--D-DGKESREI--PLPE--AGSVSGVSGDFDSDELRFSYSSFTT----PPTVYRYDLATGE 407 (414)
T ss_dssp ET--T--TEEEEEE--ESSS--SSEEEEEES-TT-SEEEEEEEETTE----EEEEEEEETTTTC
T ss_pred EC--C-CCcEEeee--cCCc--ceEEeccCCCCCCCEEEEEEeCCCC----CCEEEEEECCCCC
Confidence 98 3 34444432 2222 222122221 23443 4666554 3578899987764
No 212
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=47.26 E-value=2.5e+02 Score=26.36 Aligned_cols=85 Identities=15% Similarity=0.101 Sum_probs=45.9
Q ss_pred EEEEcCCC---CCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECC
Q 048754 397 TWIEVSGG---APPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGR 473 (625)
Q Consensus 397 ~W~~~~~~---~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 473 (625)
.|+..+++ ..+.|-.+.-...-..|.++..||- ..+|..|+++.+ .+..-- .-.-|-|+.+.-..
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~--i~r~~r---GHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGR--IQREYR---GHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCE--EEEEEc---CCcceeeeeeeccc
Confidence 47655433 2244444433333245678888872 257888887776 544321 22345566654333
Q ss_pred cEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 474 TKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 474 ~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
+.=++.|+.+ ..+.++|+.+
T Consensus 168 ~~qilsG~ED---------GtvRvWd~kt 187 (325)
T KOG0649|consen 168 NGQILSGAED---------GTVRVWDTKT 187 (325)
T ss_pred CcceeecCCC---------ccEEEEeccc
Confidence 2344556554 4566788774
No 213
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=45.23 E-value=3.6e+02 Score=27.63 Aligned_cols=121 Identities=13% Similarity=0.092 Sum_probs=57.7
Q ss_pred eeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEE
Q 048754 361 HTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTY 440 (625)
Q Consensus 361 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 440 (625)
+++....++.||..|-.+ ..+-+||+.+. . .+... |..-.--..+.+.+|-.|+.-+.+++ ++.
T Consensus 351 ts~~fHpDgLifgtgt~d-----~~vkiwdlks~--~--~~a~F--pght~~vk~i~FsENGY~Lat~add~-----~V~ 414 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTPD-----GVVKIWDLKSQ--T--NVAKF--PGHTGPVKAISFSENGYWLATAADDG-----SVK 414 (506)
T ss_pred EEeeEcCCceEEeccCCC-----ceEEEEEcCCc--c--ccccC--CCCCCceeEEEeccCceEEEEEecCC-----eEE
Confidence 333334455455444322 35778888766 2 23322 21111112334444456665553332 478
Q ss_pred EEecCCCCCceEEcCCCCCCCCCCcceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeec
Q 048754 441 LLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECN 513 (625)
Q Consensus 441 ~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~ 513 (625)
++|+.... ....+.. +.. ..-....++ .+...+++| +++.+|-....+.+|+++...
T Consensus 415 lwDLRKl~-n~kt~~l---~~~-~~v~s~~fD~SGt~L~~~g-----------~~l~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 415 LWDLRKLK-NFKTIQL---DEK-KEVNSLSFDQSGTYLGIAG-----------SDLQVYICKKKTKSWTEIKEL 472 (506)
T ss_pred EEEehhhc-ccceeec---ccc-ccceeEEEcCCCCeEEeec-----------ceeEEEEEecccccceeeehh
Confidence 88873322 1333332 211 122233333 335566655 455555554447799999876
No 214
>PLN00181 protein SPA1-RELATED; Provisional
Probab=44.99 E-value=5.3e+02 Score=29.52 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=32.1
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEE--cCCEEEEEcCcCCCCceeceEEEEecC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII--EGSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
++.+++.||.++ .+.+||+.+.. ....+... . .-.++.+ .++.+++.|+.+ ..+.+||+.
T Consensus 587 ~~~~L~Sgs~Dg-----~v~iWd~~~~~-~~~~~~~~---~---~v~~v~~~~~~g~~latgs~d------g~I~iwD~~ 648 (793)
T PLN00181 587 DPTLLASGSDDG-----SVKLWSINQGV-SIGTIKTK---A---NICCVQFPSESGRSLAFGSAD------HKVYYYDLR 648 (793)
T ss_pred CCCEEEEEcCCC-----EEEEEECCCCc-EEEEEecC---C---CeEEEEEeCCCCCEEEEEeCC------CeEEEEECC
Confidence 345777777543 57888887652 22222211 0 1112222 234567767632 368889975
Q ss_pred CC
Q 048754 446 TD 447 (625)
Q Consensus 446 ~~ 447 (625)
+.
T Consensus 649 ~~ 650 (793)
T PLN00181 649 NP 650 (793)
T ss_pred CC
Confidence 43
No 215
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.59 E-value=3.4e+02 Score=27.28 Aligned_cols=112 Identities=14% Similarity=0.175 Sum_probs=54.7
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCC----CCCCccceeEEEEcC--CEEEEEccCCCCCccccEEEE
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKS----SPPGRWGHTLSSLNG--SWLVVFGGCGRQGLLNDVFVL 389 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~p~~r~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~ 389 (625)
..|+.+||.. ..+.+-++|+......|+--..++ +-.|-+...+..+.+ ++-|+.+- -+..+-.|
T Consensus 161 p~Iva~GGke----~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T-----~~hqvR~Y 231 (412)
T KOG3881|consen 161 PYIVATGGKE----NINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT-----RYHQVRLY 231 (412)
T ss_pred CceEecCchh----cccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEe-----cceeEEEe
Confidence 4688889973 255577788776555676432221 223334333333333 33333321 23568889
Q ss_pred ECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 390 DLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 390 d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
|+....---..+.-+.. +. .+.+....++.||+ |- ...++..||...
T Consensus 232 Dt~~qRRPV~~fd~~E~--~i-s~~~l~p~gn~Iy~-gn------~~g~l~~FD~r~ 278 (412)
T KOG3881|consen 232 DTRHQRRPVAQFDFLEN--PI-SSTGLTPSGNFIYT-GN------TKGQLAKFDLRG 278 (412)
T ss_pred cCcccCcceeEeccccC--cc-eeeeecCCCcEEEE-ec------ccchhheecccC
Confidence 99865111112222211 11 12333334555444 32 335788899644
No 216
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.24 E-value=3.3e+02 Score=26.70 Aligned_cols=130 Identities=16% Similarity=0.136 Sum_probs=71.5
Q ss_pred CCCCcceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCc--cceEEEEe
Q 048754 461 PSRLGHSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPR--LDHVAVSM 537 (625)
Q Consensus 461 ~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r--~~~~~~~~ 537 (625)
.|-.+|.+++.. ...+++|+-.. -.-+++||+.+.. .-..+ ..|..| ++|.++.-
T Consensus 3 lP~RgH~~a~~p~~~~avafaRRP--------G~~~~v~D~~~g~-~~~~~-------------~a~~gRHFyGHg~fs~ 60 (305)
T PF07433_consen 3 LPARGHGVAAHPTRPEAVAFARRP--------GTFALVFDCRTGQ-LLQRL-------------WAPPGRHFYGHGVFSP 60 (305)
T ss_pred CCccccceeeCCCCCeEEEEEeCC--------CcEEEEEEcCCCc-eeeEE-------------cCCCCCEEecCEEEcC
Confidence 355567777765 34667775442 2567788988531 22222 236667 46777777
Q ss_pred cCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCC-CCCcceEEEECCc-EEEE-EcCcCCCCCccCceEE
Q 048754 538 PCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPK-FAWGHSTCVVGGT-RVLV-LGGHTGEEWVLNELHE 614 (625)
Q Consensus 538 ~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~-~r~~~~~~~~~~~-~i~i-~GG~~~~~~~~~d~~~ 614 (625)
.+..||.. .+.-...-.-|-+||. .....++. ..+. +.--|-+..++|+ .|+| -||..-.- -..=-+
T Consensus 61 dG~~LytT--End~~~g~G~IgVyd~---~~~~~ri~---E~~s~GIGPHel~l~pDG~tLvVANGGI~Thp--d~GR~k 130 (305)
T PF07433_consen 61 DGRLLYTT--ENDYETGRGVIGVYDA---ARGYRRIG---EFPSHGIGPHELLLMPDGETLVVANGGIETHP--DSGRAK 130 (305)
T ss_pred CCCEEEEe--ccccCCCcEEEEEEEC---cCCcEEEe---EecCCCcChhhEEEcCCCCEEEEEcCCCccCc--ccCcee
Confidence 45556665 2211222456778998 35666664 2222 2222777777776 5554 77864331 112246
Q ss_pred EEccCCCC
Q 048754 615 LCLASKQD 622 (625)
Q Consensus 615 ~~~~~~~~ 622 (625)
|+|++++.
T Consensus 131 LNl~tM~p 138 (305)
T PF07433_consen 131 LNLDTMQP 138 (305)
T ss_pred cChhhcCC
Confidence 66666654
No 217
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=42.94 E-value=3.9e+02 Score=27.40 Aligned_cols=171 Identities=13% Similarity=0.179 Sum_probs=77.4
Q ss_pred CCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCC
Q 048754 302 VEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQG 381 (625)
Q Consensus 302 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~ 381 (625)
.|-.|. +++-..++.+|+.-= ..++.++++|+..+.+- +.+ +..-.|-+..-.-.++++.+.=+|-..+.
T Consensus 425 ~~gERI-YAvRf~gdv~yiVTf-----rqtDPlfviDlsNPenP-kvl--GeLKIPGfS~YLHpigen~~lGvG~~~g~- 494 (603)
T COG4880 425 APGERI-YAVRFVGDVLYIVTF-----RQTDPLFVIDLSNPENP-KVL--GELKIPGFSEYLHPIGENRLLGVGAYQGG- 494 (603)
T ss_pred CCCceE-EEEEEeCceEEEEEE-----eccCceEEEEcCCCCCC-cee--EEEecCCchhhccccCCCcEEEeecccCC-
Confidence 343444 344556777776653 23445889998764211 111 11222222222223445555555544422
Q ss_pred ccccEEEEECCCCC----CEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCC
Q 048754 382 LLNDVFVLDLDAKQ----PTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTS 457 (625)
Q Consensus 382 ~~~~~~~~d~~t~~----~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~ 457 (625)
-.+..||++.-. ..--.+..--.|.-+..|+...-..-.+++.=-+ ...++|-++.+. +-.+-...
T Consensus 495 --vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay-------~~gyif~iedg~-kl~k~~e~ 564 (603)
T COG4880 495 --VKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAY-------LGGYIFFIEDGS-KLRKRAER 564 (603)
T ss_pred --ceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEeccc-------CccEEEEEecCc-eeeehhhh
Confidence 145566654220 0001111111244455565543333345443211 122444443332 12221111
Q ss_pred CCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeee
Q 048754 458 WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLEC 512 (625)
Q Consensus 458 ~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~ 512 (625)
..+.-| +..++ +.+|++|| +++|+||-+ +|+.+..
T Consensus 565 k~na~R----A~fi~-dylY~vg~-----------~ev~~lden----swe~Vge 599 (603)
T COG4880 565 KLNADR----AFFIK-DYLYLVGG-----------NEVWKLDEN----SWEVVGE 599 (603)
T ss_pred ccccee----eEEec-ceEEEecc-----------ceeEEeccc----hHhhhhh
Confidence 122222 33444 49999998 789999854 8987753
No 218
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=42.81 E-value=28 Score=28.63 Aligned_cols=42 Identities=24% Similarity=0.175 Sum_probs=33.3
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeeccccc
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDL 173 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~ 173 (625)
-+....++|+. ++.+...++|++|.+++++++=.|++...++
T Consensus 71 nY~~~~~~Gk~--lrSsT~~Ird~~g~~iG~LCIN~D~s~~~~~ 112 (118)
T PF08348_consen 71 NYKTKTKDGKI--LRSSTFFIRDENGKLIGALCINFDISALEQA 112 (118)
T ss_pred cccccCCCCCE--EEEEEEEEECCCCCEEEEEEEEeccHHHHHH
Confidence 44456778864 5677788999999999999999999977544
No 219
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=42.53 E-value=4.2e+02 Score=27.68 Aligned_cols=212 Identities=17% Similarity=0.093 Sum_probs=94.3
Q ss_pred eeEEeeecCCCCCCCc-----ccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE
Q 048754 292 CWRKFTVRGAVEPSRC-----NFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL 366 (625)
Q Consensus 292 ~W~~~~~~~~~p~~r~-----~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 366 (625)
.|.+....+..|.-|. .+|.......+|+..|- ..+.+-+||+..+ ..-+.+ ..+..--+++.+
T Consensus 61 ~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG-----~~~~Vkiwdl~~k-l~hr~l-----kdh~stvt~v~Y 129 (673)
T KOG4378|consen 61 IKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGG-----QSGCVKIWDLRAK-LIHRFL-----KDHQSTVTYVDY 129 (673)
T ss_pred EecccCCCCccceeeccccchHHHHhhhhcceeeeccC-----cCceeeehhhHHH-HHhhhc-----cCCcceeEEEEe
Confidence 4666554344443221 23333444557766552 2234677887642 111211 111122333334
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
+.+.-||..+..+ .|+.+..+.|+.. =..+..+....-| |--.....+.+..+.|. . ..|.+||...
T Consensus 130 N~~DeyiAsvs~g----Gdiiih~~~t~~~-tt~f~~~sgqsvR--ll~ys~skr~lL~~asd--~----G~VtlwDv~g 196 (673)
T KOG4378|consen 130 NNTDEYIASVSDG----GDIIIHGTKTKQK-TTTFTIDSGQSVR--LLRYSPSKRFLLSIASD--K----GAVTLWDVQG 196 (673)
T ss_pred cCCcceeEEeccC----CcEEEEecccCcc-ccceecCCCCeEE--EeecccccceeeEeecc--C----CeEEEEeccC
Confidence 5555677766543 3566667666521 1111111001111 00001112233333331 1 2466677633
Q ss_pred C--CCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCC
Q 048754 447 D--KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAV 524 (625)
Q Consensus 447 ~--~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~ 524 (625)
. ...|.+... .|+ .+-+.+.... .|++.=|.+ .+++.||+.... .-..+...
T Consensus 197 ~sp~~~~~~~Hs--AP~--~gicfspsne-~l~vsVG~D---------kki~~yD~~s~~-s~~~l~y~----------- 250 (673)
T KOG4378|consen 197 MSPIFHASEAHS--APC--RGICFSPSNE-ALLVSVGYD---------KKINIYDIRSQA-STDRLTYS----------- 250 (673)
T ss_pred CCcccchhhhcc--CCc--CcceecCCcc-ceEEEeccc---------ceEEEeeccccc-ccceeeec-----------
Confidence 2 223555432 333 2233333333 777777764 788999987421 22222211
Q ss_pred CCCCccceEEEEec-CCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 525 VPPPRLDHVAVSMP-CGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 525 ~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
.| .+++.+. ++.++++|-. ...++.||+.
T Consensus 251 ~P-----lstvaf~~~G~~L~aG~s------~G~~i~YD~R 280 (673)
T KOG4378|consen 251 HP-----LSTVAFSECGTYLCAGNS------KGELIAYDMR 280 (673)
T ss_pred CC-----cceeeecCCceEEEeecC------CceEEEEecc
Confidence 12 3445554 4455555443 4588888883
No 220
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=42.51 E-value=2e+02 Score=23.87 Aligned_cols=71 Identities=11% Similarity=0.234 Sum_probs=42.9
Q ss_pred cCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeE
Q 048754 492 SGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWR 571 (625)
Q Consensus 492 ~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~ 571 (625)
...+..||+.++ +|+.+... ............+.. +|+|-++.-........-++|+++-. ++..|+
T Consensus 19 ~~~IvsFDv~~E--~f~~i~~P---------~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~~~iWvLeD~-~k~~Ws 85 (129)
T PF08268_consen 19 NNVIVSFDVRSE--KFRFIKLP---------EDPYSSDCSSTLIEY-KGKLALVSYNDQGEPDSIDIWVLEDY-EKQEWS 85 (129)
T ss_pred CcEEEEEEcCCc--eEEEEEee---------eeeccccCccEEEEe-CCeEEEEEecCCCCcceEEEEEeecc-ccceEE
Confidence 367888999954 77766542 001222233344445 88888875543322234589999632 578999
Q ss_pred EEcC
Q 048754 572 ILNV 575 (625)
Q Consensus 572 ~v~~ 575 (625)
+...
T Consensus 86 k~~~ 89 (129)
T PF08268_consen 86 KKHI 89 (129)
T ss_pred EEEE
Confidence 8854
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=41.86 E-value=3.9e+02 Score=27.15 Aligned_cols=172 Identities=16% Similarity=0.180 Sum_probs=76.7
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEE--cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII--EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPP 461 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~ 461 (625)
+.+.++|..+.+ .-..++.+. .-|..... +++++|+.+. + ..+-++|+.+.. .-.++..
T Consensus 16 ~~v~viD~~t~~-~~~~i~~~~-----~~h~~~~~s~Dgr~~yv~~r---d----g~vsviD~~~~~-~v~~i~~----- 76 (369)
T PF02239_consen 16 GSVAVIDGATNK-VVARIPTGG-----APHAGLKFSPDGRYLYVANR---D----GTVSVIDLATGK-VVATIKV----- 76 (369)
T ss_dssp TEEEEEETTT-S-EEEEEE-ST-----TEEEEEE-TT-SSEEEEEET---T----SEEEEEETTSSS-EEEEEE------
T ss_pred CEEEEEECCCCe-EEEEEcCCC-----CceeEEEecCCCCEEEEEcC---C----CeEEEEECCccc-EEEEEec-----
Confidence 578999998873 234554321 11554443 4678999753 2 257889986654 1223332
Q ss_pred CCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCE
Q 048754 462 SRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGR 541 (625)
Q Consensus 462 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~ 541 (625)
+....+.++-.+++.++.+... .+.+.++|.++ .+.+...+.... + ...+.+|. .+.+......
T Consensus 77 G~~~~~i~~s~DG~~~~v~n~~--------~~~v~v~D~~t----le~v~~I~~~~~--~-~~~~~~Rv-~aIv~s~~~~ 140 (369)
T PF02239_consen 77 GGNPRGIAVSPDGKYVYVANYE--------PGTVSVIDAET----LEPVKTIPTGGM--P-VDGPESRV-AAIVASPGRP 140 (369)
T ss_dssp SSEEEEEEE--TTTEEEEEEEE--------TTEEEEEETTT------EEEEEE--EE----TTTS---E-EEEEE-SSSS
T ss_pred CCCcceEEEcCCCCEEEEEecC--------CCceeEecccc----ccceeecccccc--c-ccccCCCc-eeEEecCCCC
Confidence 3333445444444444444332 37788899772 333332210000 0 00133333 2222233445
Q ss_pred EEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEc
Q 048754 542 IIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLG 600 (625)
Q Consensus 542 l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~G 600 (625)
.||+-=. ..+++|..|....++..... .+.+++-|-.....+++.++.+
T Consensus 141 ~fVv~lk-----d~~~I~vVdy~d~~~~~~~~-----i~~g~~~~D~~~dpdgry~~va 189 (369)
T PF02239_consen 141 EFVVNLK-----DTGEIWVVDYSDPKNLKVTT-----IKVGRFPHDGGFDPDGRYFLVA 189 (369)
T ss_dssp EEEEEET-----TTTEEEEEETTTSSCEEEEE-----EE--TTEEEEEE-TTSSEEEEE
T ss_pred EEEEEEc-----cCCeEEEEEeccccccceee-----ecccccccccccCcccceeeec
Confidence 5555222 25789999974222222222 1234444666666655554443
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.98 E-value=3.9e+02 Score=26.90 Aligned_cols=29 Identities=24% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEEcCcCCCCceeceEEEEecCCCCCceEEc
Q 048754 422 KLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREI 454 (625)
Q Consensus 422 ~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 454 (625)
.|+.+||..+ .+.+.++|+......|+.-
T Consensus 162 ~Iva~GGke~----~n~lkiwdle~~~qiw~aK 190 (412)
T KOG3881|consen 162 YIVATGGKEN----INELKIWDLEQSKQIWSAK 190 (412)
T ss_pred ceEecCchhc----ccceeeeecccceeeeecc
Confidence 6888899653 4567778876766678653
No 223
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=40.70 E-value=4.4e+02 Score=27.41 Aligned_cols=256 Identities=14% Similarity=0.000 Sum_probs=0.0
Q ss_pred EEEEEc--ccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccc--eeEEEEcCCEEEEEccCCCCCccccE------
Q 048754 317 RLVLFG--GEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWG--HTLSSLNGSWLVVFGGCGRQGLLNDV------ 386 (625)
Q Consensus 317 ~lyv~G--G~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~--~~~~~~~~~~iyv~GG~~~~~~~~~~------ 386 (625)
.+|++| |...-..--....++.+.- ..|-.+.....-.-.+| |+++.-.++.||..|-......-.++
T Consensus 69 ~v~~~Gsn~~~eLGlg~de~~~~~P~~--~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~ 146 (476)
T COG5184 69 SVYSWGSNGMNELGLGNDETKVDRPQL--NPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICD 146 (476)
T ss_pred eeEEEecCcceeeccCCchhcccCcee--cCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccccccccccccc
Q ss_pred ---------EEEECCCCCCEEEEc------C-CCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCc
Q 048754 387 ---------FVLDLDAKQPTWIEV------S-GGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPM 450 (625)
Q Consensus 387 ---------~~~d~~t~~~~W~~~------~-~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~ 450 (625)
+.....+. .--+. + .-..-..-..++++...++.+|.+|...... -....|. .+.+
T Consensus 147 ~~~~~~~~~~~~~~~tP--~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e---~~~g~~~---~s~k 218 (476)
T COG5184 147 QNNDIIDFDDYELESTP--FKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGE---LGQGSYK---NSQK 218 (476)
T ss_pred ccccccccchhhcccCC--ceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccc---ccccccc---cccc
Q ss_pred eEEcCCCCCCC--------CCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCC
Q 048754 451 WREIPTSWSPP--------SRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQS 522 (625)
Q Consensus 451 W~~~~~~~~p~--------~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~ 522 (625)
|+....+..-+ +-..|-.++..++++|-+|-.............+-..-+..+...-..+...
T Consensus 219 ~~~~~~p~~v~~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~v--------- 289 (476)
T COG5184 219 TSIQFTPLKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYV--------- 289 (476)
T ss_pred ceeeeeeeecCchheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhc---------
Q ss_pred CCCCCCccceEEEEecCCEEEEEecCCCCCCCCC-------cEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcE
Q 048754 523 AVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPS-------QLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTR 595 (625)
Q Consensus 523 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~-------~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~ 595 (625)
..-..|++++-.++.||..|.-..+..... ..+.=+.+ ....|..+ .....-..|+.+...++.
T Consensus 290 ----acG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~-~~~~~~~i----~~is~ge~H~l~L~~~G~ 360 (476)
T COG5184 290 ----ACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYK-QLLSGVTI----CSISAGESHSLILRKDGT 360 (476)
T ss_pred ----ccCcceEEEEcCCCeEEEeccchhcccccCcccccceeecccccc-ccCCCceE----EEEecCcceEEEEecCce
Q ss_pred EEEEc
Q 048754 596 VLVLG 600 (625)
Q Consensus 596 i~i~G 600 (625)
+|-+|
T Consensus 361 l~a~G 365 (476)
T COG5184 361 LYAFG 365 (476)
T ss_pred EEEec
No 224
>PTZ00421 coronin; Provisional
Probab=40.30 E-value=4.9e+02 Score=27.77 Aligned_cols=106 Identities=11% Similarity=0.030 Sum_probs=49.7
Q ss_pred EEEEEccCCCCCccccEEEEECCCCCCEEE-EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 370 WLVVFGGCGRQGLLNDVFVLDLDAKQPTWI-EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 370 ~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
.+++.||.++ .+.++|+.++ .-. .+... ... . .+.....++.+++.|+.+ ..+.+||+.+..
T Consensus 139 ~iLaSgs~Dg-----tVrIWDl~tg--~~~~~l~~h--~~~-V-~sla~spdG~lLatgs~D------g~IrIwD~rsg~ 201 (493)
T PTZ00421 139 NVLASAGADM-----VVNVWDVERG--KAVEVIKCH--SDQ-I-TSLEWNLDGSLLCTTSKD------KKLNIIDPRDGT 201 (493)
T ss_pred CEEEEEeCCC-----EEEEEECCCC--eEEEEEcCC--CCc-e-EEEEEECCCCEEEEecCC------CEEEEEECCCCc
Confidence 4777777543 5888898876 322 23221 111 1 122222344566666643 357788986544
Q ss_pred CceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 449 PMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 449 ~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
. ...+.. ....+. ..++...++..++..|.+... ...+.+||+.
T Consensus 202 ~-v~tl~~--H~~~~~-~~~~w~~~~~~ivt~G~s~s~-----Dr~VklWDlr 245 (493)
T PTZ00421 202 I-VSSVEA--HASAKS-QRCLWAKRKDLIITLGCSKSQ-----QRQIMLWDTR 245 (493)
T ss_pred E-EEEEec--CCCCcc-eEEEEcCCCCeEEEEecCCCC-----CCeEEEEeCC
Confidence 2 222221 111111 122233333444555543221 2567888876
No 225
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=40.19 E-value=1.5e+02 Score=24.05 Aligned_cols=75 Identities=24% Similarity=0.342 Sum_probs=42.2
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
..+-++++|. +|.+++. +..+.+|+....- . ..+.+ +|+.+...
T Consensus 38 ~~~~i~v~D~---~g~~l~~----------s~~~~iG~~~~~~--------------~------~~~aL-~G~~~~~~-- 81 (116)
T PF14827_consen 38 DIDYIVVTDR---DGIVLAH----------SDPERIGDRYSDE--------------D------VRKAL-QGKSYTSV-- 81 (116)
T ss_dssp T-SEEEEECT---TSBECE-----------SSCCCTTSB-SSC--------------C------HCHHC-CT--EEEE--
T ss_pred CCeEEEEEcC---CCCEEEc----------CChHHcCCcccCC--------------C------hhhhh-cCCceEEe--
Confidence 4567889999 9988764 3345577654321 0 11233 55554433
Q ss_pred EEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEe
Q 048754 133 NFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIF 166 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~D 166 (625)
..|..-+......|+.|.+|+++|++.+...
T Consensus 82 ---~~~~~~~~~~~~~PV~d~~g~viG~V~VG~~ 112 (116)
T PF14827_consen 82 ---SQGTGGPSLRAFAPVYDSDGKVIGVVSVGVS 112 (116)
T ss_dssp ---EECTTCEEEEEEEEEE-TTS-EEEEEEEEEE
T ss_pred ---eecCCceEEEEEEeeECCCCcEEEEEEEEEE
Confidence 2233345566788999999999999876543
No 226
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=38.30 E-value=4.3e+02 Score=26.63 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=40.1
Q ss_pred EECCEEEEEcccCC---CCCCCCCeEEEeccCCCCceEEcccCCCCCCc-----cceeEEE-EcCCEEEEEccCCCCCcc
Q 048754 313 AAGNRLVLFGGEGV---NMQPMDDTFVLNLDAANPEWRRVSVKSSPPGR-----WGHTLSS-LNGSWLVVFGGCGRQGLL 383 (625)
Q Consensus 313 ~~~~~lyv~GG~~~---~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r-----~~~~~~~-~~~~~iyv~GG~~~~~~~ 383 (625)
..++.||+.-.+-. .....+.+.++|+.+-. .-.++.. ++.|| .-...+. -+|+.+||.- . ...
T Consensus 55 pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~-~~~~i~~--p~~p~~~~~~~~~~~~ls~dgk~l~V~n-~---~p~ 127 (352)
T TIGR02658 55 SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL-PIADIEL--PEGPRFLVGTYPWMTSLTPDNKTLLFYQ-F---SPS 127 (352)
T ss_pred CCCCEEEEEeccccccccCCCCCEEEEEECccCc-EEeEEcc--CCCchhhccCccceEEECCCCCEEEEec-C---CCC
Confidence 34678999987422 23345668999998732 1223322 23333 1122222 2455677763 1 223
Q ss_pred ccEEEEECCCC
Q 048754 384 NDVFVLDLDAK 394 (625)
Q Consensus 384 ~~~~~~d~~t~ 394 (625)
+.+-++|+.++
T Consensus 128 ~~V~VvD~~~~ 138 (352)
T TIGR02658 128 PAVGVVDLEGK 138 (352)
T ss_pred CEEEEEECCCC
Confidence 56777777766
No 227
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=37.26 E-value=5.2e+02 Score=27.22 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=36.2
Q ss_pred EEEEec-CCEEEEEecCCCCCCCCCcEEEEeCCCC---CCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCc
Q 048754 533 VAVSMP-CGRIIIFGGSIAGLHSPSQLFLLDPSEE---KPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWV 608 (625)
Q Consensus 533 ~~~~~~-~~~l~v~GG~~~~~~~~~~v~~~d~~~~---~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~ 608 (625)
+++.++ ++++++--|.+ +.+-++|+.+- -+.|+ .+|.+--+--|++.++.+|++.|-...+..-
T Consensus 368 tsi~FS~dg~~LlSRg~D------~tLKvWDLrq~kkpL~~~t------gL~t~~~~tdc~FSPd~kli~TGtS~~~~~~ 435 (641)
T KOG0772|consen 368 TSISFSYDGNYLLSRGFD------DTLKVWDLRQFKKPLNVRT------GLPTPFPGTDCCFSPDDKLILTGTSAPNGMT 435 (641)
T ss_pred eEEEeccccchhhhccCC------Cceeeeeccccccchhhhc------CCCccCCCCccccCCCceEEEecccccCCCC
Confidence 344443 66666665643 34445665211 12232 3344333445667777788887765444332
Q ss_pred cCceEEEEc
Q 048754 609 LNELHELCL 617 (625)
Q Consensus 609 ~~d~~~~~~ 617 (625)
...+++|+.
T Consensus 436 ~g~L~f~d~ 444 (641)
T KOG0772|consen 436 AGTLFFFDR 444 (641)
T ss_pred CceEEEEec
Confidence 333444443
No 228
>PTZ00421 coronin; Provisional
Probab=37.07 E-value=5.4e+02 Score=27.41 Aligned_cols=61 Identities=18% Similarity=0.082 Sum_probs=32.3
Q ss_pred EEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 422 KLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 422 ~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
.+++.||.+ ..+.++|+.+.. .-..+.. .... -.++....++.+++.|+.+ ..+.+||+.
T Consensus 139 ~iLaSgs~D------gtVrIWDl~tg~-~~~~l~~--h~~~--V~sla~spdG~lLatgs~D---------g~IrIwD~r 198 (493)
T PTZ00421 139 NVLASAGAD------MVVNVWDVERGK-AVEVIKC--HSDQ--ITSLEWNLDGSLLCTTSKD---------KKLNIIDPR 198 (493)
T ss_pred CEEEEEeCC------CEEEEEECCCCe-EEEEEcC--CCCc--eEEEEEECCCCEEEEecCC---------CEEEEEECC
Confidence 466666643 357788876543 1122221 1111 1223333345777777753 567889987
Q ss_pred C
Q 048754 502 D 502 (625)
Q Consensus 502 ~ 502 (625)
+
T Consensus 199 s 199 (493)
T PTZ00421 199 D 199 (493)
T ss_pred C
Confidence 4
No 229
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=36.74 E-value=3.6e+02 Score=25.30 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=44.0
Q ss_pred CCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCc
Q 048754 355 PPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGV 434 (625)
Q Consensus 355 p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~ 434 (625)
+.|-.+.....-..+.|++.||- ..+|..|++++ +.+..-.+ ..-+-|+.+.-+.+.=++.|+.+ +
T Consensus 113 evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G--~i~r~~rG---HtDYvH~vv~R~~~~qilsG~ED--G- 178 (325)
T KOG0649|consen 113 EVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDG--RIQREYRG---HTDYVHSVVGRNANGQILSGAED--G- 178 (325)
T ss_pred cCCccceeEeccCCCcEEEecCC------eEEEEEEecCC--EEEEEEcC---CcceeeeeeecccCcceeecCCC--c-
Confidence 44444433333245679999983 25888999998 77655432 34566776654444445556532 2
Q ss_pred eeceEEEEecCCC
Q 048754 435 LLSDTYLLDLTTD 447 (625)
Q Consensus 435 ~~~~~~~~d~~~~ 447 (625)
.+-++|.++.
T Consensus 179 ---tvRvWd~kt~ 188 (325)
T KOG0649|consen 179 ---TVRVWDTKTQ 188 (325)
T ss_pred ---cEEEEecccc
Confidence 4556675443
No 230
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms]
Probab=36.54 E-value=63 Score=27.92 Aligned_cols=149 Identities=24% Similarity=0.239 Sum_probs=69.9
Q ss_pred CCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEEEEeecCcceeEEE
Q 048754 66 DFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRL 145 (625)
Q Consensus 66 ~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~ 145 (625)
.+.+...+......+++......+ ....... .............................++...++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (232)
T COG2202 8 DGRIIYANEAAEELLGYSAEELLG-LLLALHP----------EDRDRLRELLRRLLAGEELLSEELRLVRKDGEERWVEL 76 (232)
T ss_pred cccEEEecccchhhcCCChHHhhh-hhhccCc----------cchhhhHHHHHHHhccCCcchhhHHhhhcCCcEEEEEe
Confidence 667888888888888887776655 1000000 00001111111111111111111122233444333333
Q ss_pred EEEEeeCCCCCEEEEEEEEEeeecccccCCcchhhhhhhhcccccccc---ccccCCCCCCcccccccccccCc-hhHHH
Q 048754 146 RLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYDQSA---QYFSGGHSPLSQHQDICGILQLS-DEVLA 221 (625)
Q Consensus 146 ~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~n~~~~~~~g~~-~e~~~ 221 (625)
.........+.....+.. .++++.+..++... ..+.++...+.... .+++.+..+.++|+++++++|++ .+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~n~~~~~~~g~~~~~~~~ 154 (232)
T COG2202 77 SAAPLRDGEGRVLGLLGL-RDITERKRAEEALR-ESEERLRALLEASPDGIWVLDEDGRILYANPAAEELLGYSPEEELG 154 (232)
T ss_pred cceEEEcCCCCEEEEEee-eecchHHHHHHHHH-HHHHHHHHHHhhCCceEEEEeCCCCEEEeCHHHHHHhCCChHHhcC
Confidence 322223334444444555 67777766544211 22222333333332 23466677779999999999999 55544
Q ss_pred Hhhhcc
Q 048754 222 HNILSR 227 (625)
Q Consensus 222 ~~~~~~ 227 (625)
......
T Consensus 155 ~~~~~~ 160 (232)
T COG2202 155 RGLSDL 160 (232)
T ss_pred CChhhe
Confidence 444333
No 231
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=35.94 E-value=3.6e+02 Score=25.46 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=36.4
Q ss_pred eEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCC
Q 048754 532 HVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGE 605 (625)
Q Consensus 532 ~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~ 605 (625)
.++...++..+||.||.+ -.++.||.. +..=...-..|. .---|+....+++.+|..|-.++.
T Consensus 228 ~SASL~P~k~~fVaGged------~~~~kfDy~--TgeEi~~~nkgh---~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 228 ESASLHPKKEFFVAGGED------FKVYKFDYN--TGEEIGSYNKGH---FGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred ccccccCCCceEEecCcc------eEEEEEecc--CCceeeecccCC---CCceEEEEECCCCceeeccCCCce
Confidence 344455577899999963 356677762 221111101111 111366667788899999987764
No 232
>KOG3753 consensus Circadian clock protein period [Signal transduction mechanisms]
Probab=34.91 E-value=72 Score=35.41 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=52.3
Q ss_pred CCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcce---EEEEEEEeecCcce
Q 048754 65 PDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEF---QGELLNFKKDGTPL 141 (625)
Q Consensus 65 ~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~e~~~~~~dG~~~ 141 (625)
....+..|..++..++||=+.++||+++..+ +||++...+.+...+.+..++.. ...+++...+|...
T Consensus 339 ptClf~hVDeaAVp~LGyLPqDLIG~sil~f---------~H~eDr~vm~q~H~~v~q~~G~p~F~~sp~Rf~aqNG~yv 409 (1114)
T KOG3753|consen 339 PTCLFQHVDEAAVPLLGYLPQDLIGTSILAF---------VHPEDRHVMVQIHQKVLQSGGKPVFSHSPIRFCAQNGSYV 409 (1114)
T ss_pred CcceeeecchhhhhhhccCchhhhccchhhh---------hcCCchHHHHHHHHHHHHhCCCCcccccceeeeecCCcEE
Confidence 3677888999999999999999999998777 35666666666666666644322 23567778888766
Q ss_pred eEEE
Q 048754 142 VNRL 145 (625)
Q Consensus 142 ~~~~ 145 (625)
.+..
T Consensus 410 ~ldT 413 (1114)
T KOG3753|consen 410 RLDT 413 (1114)
T ss_pred EEec
Confidence 5544
No 233
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=34.38 E-value=27 Score=36.12 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=41.0
Q ss_pred ecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCccccc
Q 048754 43 LKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQY 97 (625)
Q Consensus 43 ~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~ 97 (625)
+++-.+..++..--++++.. +|.|.|++...+..+|+-..+++-++..++.+
T Consensus 110 llege~lLqsLnGF~lVvt~---eg~ifyAS~tIedYLGFhQSDV~HQsVYdlIH 161 (712)
T KOG3560|consen 110 LLEGELLLQSLNGFALVVTA---EGEIFYASATIEDYLGFHQSDVMHQSVYDLIH 161 (712)
T ss_pred ccchHHHHHhcCCeEEEEec---CceEEEehhhHHhhhcccccchhhhhHHHHhh
Confidence 44444444445555677777 99999999999999999999999999988864
No 234
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=33.33 E-value=20 Score=37.45 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=27.7
Q ss_pred cCCCCCCcccccccccccCc---hhHHHHhhhcccCc
Q 048754 197 SGGHSPLSQHQDICGILQLS---DEVLAHNILSRLTP 230 (625)
Q Consensus 197 ~~~~~~~~~n~~~~~~~g~~---~e~~~~~~~~~~~~ 230 (625)
|..+.+..+|+++++|++++ .+.+|..+...++|
T Consensus 232 d~~G~It~~N~~A~~ll~~~~~~~~~ig~~i~~v~~p 268 (537)
T COG3290 232 DKKGVITLINQAAQKLLGLRQPSGDPIGRSIVEVLPP 268 (537)
T ss_pred CCCCeEeehhHHHHHHhcccCcCcccccccceEeecc
Confidence 55555669999999999998 35788889888887
No 235
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=33.33 E-value=9e+02 Score=28.83 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=39.6
Q ss_pred EEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCC-------CCC--CCcceEEEECCcEEEEEcCcC
Q 048754 533 VAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQP-------PKF--AWGHSTCVVGGTRVLVLGGHT 603 (625)
Q Consensus 533 ~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~-------p~~--r~~~~~~~~~~~~i~i~GG~~ 603 (625)
.++...++.|||.-.. ...|.+||+ .+.....+...|.. ... ..-+++++..++++||.-..+
T Consensus 808 Gvavd~dG~LYVADs~------N~rIrviD~--~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N 879 (1057)
T PLN02919 808 GVLCAKDGQIYVADSY------NHKIKKLDP--ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN 879 (1057)
T ss_pred eeeEeCCCcEEEEECC------CCEEEEEEC--CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence 3333446789988543 568999998 56666555432211 011 112344555566888875432
Q ss_pred CCCCccCceEEEEccC
Q 048754 604 GEEWVLNELHELCLAS 619 (625)
Q Consensus 604 ~~~~~~~d~~~~~~~~ 619 (625)
+.|.++++.+
T Consensus 880 ------n~Irvid~~~ 889 (1057)
T PLN02919 880 ------SLIRYLDLNK 889 (1057)
T ss_pred ------CEEEEEECCC
Confidence 3455555544
No 236
>PLN00181 protein SPA1-RELATED; Provisional
Probab=32.27 E-value=8.1e+02 Score=27.99 Aligned_cols=101 Identities=18% Similarity=0.130 Sum_probs=48.1
Q ss_pred EEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 370 WLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 370 ~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
..++.|+.+ ..+.++|..++ +....-.. ..... .+.... .++.+++.||.+ ..+.+||+.+..
T Consensus 546 ~~las~~~D-----g~v~lWd~~~~--~~~~~~~~--H~~~V-~~l~~~p~~~~~L~Sgs~D------g~v~iWd~~~~~ 609 (793)
T PLN00181 546 SQVASSNFE-----GVVQVWDVARS--QLVTEMKE--HEKRV-WSIDYSSADPTLLASGSDD------GSVKLWSINQGV 609 (793)
T ss_pred CEEEEEeCC-----CeEEEEECCCC--eEEEEecC--CCCCE-EEEEEcCCCCCEEEEEcCC------CEEEEEECCCCc
Confidence 355556543 35888898776 32221111 11111 122222 234577777743 257778875432
Q ss_pred CceEEcCCCCCCCCCCcceEEEE--CCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 449 PMWREIPTSWSPPSRLGHSLSVY--GRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 449 ~~W~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
....+.. .. ...++.+ .++.++++|+.+ ..+.+||+..
T Consensus 610 -~~~~~~~---~~---~v~~v~~~~~~g~~latgs~d---------g~I~iwD~~~ 649 (793)
T PLN00181 610 -SIGTIKT---KA---NICCVQFPSESGRSLAFGSAD---------HKVYYYDLRN 649 (793)
T ss_pred -EEEEEec---CC---CeEEEEEeCCCCCEEEEEeCC---------CeEEEEECCC
Confidence 1222221 11 1122222 234677777653 5788898863
No 237
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=31.92 E-value=79 Score=36.80 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=28.0
Q ss_pred cccccccCCCCeeEEEec-CCCCCCCEEEEehHHHHHhCCCc
Q 048754 44 KPGLLFYPTTPTSFVVAD-AFDPDFPIIYVNKVFEIFTGYRA 84 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d-~~~~~g~i~~~N~~~~~~~G~~~ 84 (625)
.+.+++. .+.++++.+ . +|.++..|+.+..++++..
T Consensus 336 ~r~iv~~--~p~gi~i~~~~---~g~~~~~N~~a~~~~~l~~ 372 (924)
T PRK10841 336 NRKIVAS--APVGICILRTS---DGTNILSNELAHNYLNMLT 372 (924)
T ss_pred HHHHHHh--CCccEEEEEcC---CCcEEEehHHHHHHhccCC
Confidence 3444444 899998886 5 8999999999999887643
No 238
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=31.77 E-value=5.1e+02 Score=25.51 Aligned_cols=140 Identities=11% Similarity=0.155 Sum_probs=66.9
Q ss_pred CEEEEEcCcCC-CC--cee-ceEEEEecCCC---CCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccC
Q 048754 421 SKLVVSGGCTD-AG--VLL-SDTYLLDLTTD---KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSG 493 (625)
Q Consensus 421 ~~iyv~GG~~~-~~--~~~-~~~~~~d~~~~---~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 493 (625)
..++++|.... .. ... ..+++|++... ..++..+.....+.+ -.+++.+++ +|++.-| +
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~--V~ai~~~~~-~lv~~~g-----------~ 107 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGP--VTAICSFNG-RLVVAVG-----------N 107 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS---EEEEEEETT-EEEEEET-----------T
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCc--ceEhhhhCC-EEEEeec-----------C
Confidence 45666664321 11 122 56888988663 123554433212222 345666655 7666544 6
Q ss_pred ceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEE--EEeCCCCCCCeE
Q 048754 494 ESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLF--LLDPSEEKPSWR 571 (625)
Q Consensus 494 ~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~--~~d~~~~~~~W~ 571 (625)
.+++|++.... ++...... ..+- ....+...++ .+++|-. ...+. .|+. ...+-.
T Consensus 108 ~l~v~~l~~~~-~l~~~~~~------------~~~~-~i~sl~~~~~-~I~vgD~------~~sv~~~~~~~--~~~~l~ 164 (321)
T PF03178_consen 108 KLYVYDLDNSK-TLLKKAFY------------DSPF-YITSLSVFKN-YILVGDA------MKSVSLLRYDE--ENNKLI 164 (321)
T ss_dssp EEEEEEEETTS-SEEEEEEE-------------BSS-SEEEEEEETT-EEEEEES------SSSEEEEEEET--TTE-EE
T ss_pred EEEEEEccCcc-cchhhhee------------cceE-EEEEEecccc-EEEEEEc------ccCEEEEEEEc--cCCEEE
Confidence 78888887422 37777765 2222 3334444366 4555553 33444 4554 344455
Q ss_pred EEcCCCCCCCCCCcceEEEECCcEEEEEcC
Q 048754 572 ILNVPGQPPKFAWGHSTCVVGGTRVLVLGG 601 (625)
Q Consensus 572 ~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG 601 (625)
.+. .-+.+++..++..+.++. .++++
T Consensus 165 ~va---~d~~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 165 LVA---RDYQPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp EEE---EESS-BEEEEEEEE-SSS-EEEEE
T ss_pred EEE---ecCCCccEEEEEEecCCc-EEEEE
Confidence 553 233355555666662224 44443
No 239
>PRK13559 hypothetical protein; Provisional
Probab=31.67 E-value=25 Score=35.53 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=24.9
Q ss_pred CCCCcccccccccccCc-hhHHHHhhhcccCch
Q 048754 200 HSPLSQHQDICGILQLS-DEVLAHNILSRLTPR 231 (625)
Q Consensus 200 ~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~ 231 (625)
..++++|+++++++|++ ++++|..+..+.++.
T Consensus 66 g~i~~~N~a~~~l~G~~~~e~iG~~~~~l~~~~ 98 (361)
T PRK13559 66 LPIVLANQAFLDLTGYAAEEVVGRNCRFLQGAA 98 (361)
T ss_pred CcEEEEchHHHHHhCCCHHHHcCCChhhhcCCC
Confidence 34669999999999998 888887766555443
No 240
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.23 E-value=7.9e+02 Score=27.54 Aligned_cols=74 Identities=12% Similarity=0.050 Sum_probs=36.9
Q ss_pred CcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEccc-CCCCCCccceeEEEEcCCEEEEEccCCCCCccc
Q 048754 306 RCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSV-KSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLN 384 (625)
Q Consensus 306 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~ 384 (625)
+-..+++.+.++.+.||-.... ++.++... +. ...-. ++....-...+.|.. ++++.|.|=.++ .
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~------v~~~~~~~--~~-~~~~~~s~~~~~Gey~asCS~-DGkv~I~sl~~~----~ 104 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGA------VYLTTCQG--NP-KTNFDHSSSILEGEYVASCSD-DGKVVIGSLFTD----D 104 (846)
T ss_pred hhHHHHHHhhcceeeeccccce------EEEEecCC--cc-cccccccccccCCceEEEecC-CCcEEEeeccCC----c
Confidence 4445667788889999865332 66666554 22 21111 111111222344434 556777665433 2
Q ss_pred cEEEEECCC
Q 048754 385 DVFVLDLDA 393 (625)
Q Consensus 385 ~~~~~d~~t 393 (625)
.+..||+..
T Consensus 105 ~~~~~df~r 113 (846)
T KOG2066|consen 105 EITQYDFKR 113 (846)
T ss_pred cceeEecCC
Confidence 355566643
No 241
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=30.49 E-value=19 Score=39.92 Aligned_cols=48 Identities=10% Similarity=0.130 Sum_probs=38.7
Q ss_pred cccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhH
Q 048754 189 YDQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASI 236 (625)
Q Consensus 189 ~~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~ 236 (625)
++.=..++..++.|+||.+.+..++||. +|+.|..+++++||.+...+
T Consensus 104 lDGF~fvV~cdG~IvyVSeSVT~~L~y~QsDL~~qSly~ilhp~d~~~~ 152 (803)
T KOG3561|consen 104 LDGFLFVVNCDGRIVYVSESVTSVLGYLQSDLMGQSLYDILHPLDNDKP 152 (803)
T ss_pred hcCeEEEEecCceEEEEecchHHhhCcCHHHHhcchHHHhcCccccCcc
Confidence 3333334466688889999999999999 99999999999999776544
No 242
>PF12860 PAS_7: PAS fold
Probab=30.41 E-value=19 Score=29.18 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=26.5
Q ss_pred cccccccccCCCCCCcccccccccccCchhHH
Q 048754 189 YDQSAQYFSGGHSPLSQHQDICGILQLSDEVL 220 (625)
Q Consensus 189 ~~~~~~~~~~~~~~~~~n~~~~~~~g~~~e~~ 220 (625)
+.....++|.+...+++|+++.++++++.+.+
T Consensus 4 l~~Gv~v~D~~~rl~~~N~~~~~l~~~~~~~~ 35 (115)
T PF12860_consen 4 LPQGVAVFDSDGRLVFWNQRFRELFGLPPEML 35 (115)
T ss_pred cCceEEEEcCCCeEEeEcHHHHHHhCCCHHHh
Confidence 45556677989999999999999999996554
No 243
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=29.02 E-value=59 Score=30.66 Aligned_cols=56 Identities=25% Similarity=0.395 Sum_probs=46.6
Q ss_pred cccccccCchhHHHHhhhcccCc-hhhhhHHhHHHHHHHhhcchhHHhhhhhhccccc
Q 048754 208 DICGILQLSDEVLAHNILSRLTP-RDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGRE 264 (625)
Q Consensus 208 ~~~~~~g~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (625)
+.-.+..+|.+++ .+|+.+++. .|+.+++++-..+..+..+..+||..|.=++.+.
T Consensus 198 ~~ltl~dLP~e~v-l~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~er 254 (332)
T KOG3926|consen 198 AGLTLHDLPLECV-LNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNER 254 (332)
T ss_pred CCCCcccchHHHH-HHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 6778899998888 788888775 8899999999999999998888998887655443
No 244
>PRK01742 tolB translocation protein TolB; Provisional
Probab=28.69 E-value=6.8e+02 Score=25.97 Aligned_cols=165 Identities=13% Similarity=0.148 Sum_probs=76.8
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR 463 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 463 (625)
..++++|+.++ .-..+... +. ........-+++.+++... .. +. .++|.+|+.+.. ...+... ..
T Consensus 228 ~~i~i~dl~tg--~~~~l~~~--~g-~~~~~~wSPDG~~La~~~~-~~-g~--~~Iy~~d~~~~~--~~~lt~~--~~-- 292 (429)
T PRK01742 228 SQLVVHDLRSG--ARKVVASF--RG-HNGAPAFSPDGSRLAFASS-KD-GV--LNIYVMGANGGT--PSQLTSG--AG-- 292 (429)
T ss_pred cEEEEEeCCCC--ceEEEecC--CC-ccCceeECCCCCEEEEEEe-cC-Cc--EEEEEEECCCCC--eEeeccC--CC--
Confidence 46899999877 54445432 11 1111122224444544322 11 21 258888876654 6665531 11
Q ss_pred CcceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEE
Q 048754 464 LGHSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542 (625)
Q Consensus 464 ~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 542 (625)
.........++ .|+...... + ..++|.++.... .-..+. . .. ....+ ..+++.
T Consensus 293 ~~~~~~wSpDG~~i~f~s~~~--g-----~~~I~~~~~~~~--~~~~l~-~-------------~~--~~~~~-SpDG~~ 346 (429)
T PRK01742 293 NNTEPSWSPDGQSILFTSDRS--G-----SPQVYRMSASGG--GASLVG-G-------------RG--YSAQI-SADGKT 346 (429)
T ss_pred CcCCEEECCCCCEEEEEECCC--C-----CceEEEEECCCC--CeEEec-C-------------CC--CCccC-CCCCCE
Confidence 11223333333 444443221 1 257788877632 222221 1 01 11222 224444
Q ss_pred EEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 543 IIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 543 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
+++.+. +.++.+|+ .+..+..+... . ...+....++++.+++++..+
T Consensus 347 ia~~~~-------~~i~~~Dl--~~g~~~~lt~~--~----~~~~~~~sPdG~~i~~~s~~g 393 (429)
T PRK01742 347 LVMING-------DNVVKQDL--TSGSTEVLSST--F----LDESPSISPNGIMIIYSSTQG 393 (429)
T ss_pred EEEEcC-------CCEEEEEC--CCCCeEEecCC--C----CCCCceECCCCCEEEEEEcCC
Confidence 444332 36888998 56777766421 1 112334555677777776543
No 245
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=28.24 E-value=4e+02 Score=25.69 Aligned_cols=157 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred CceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEE
Q 048754 344 PEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKL 423 (625)
Q Consensus 344 ~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i 423 (625)
+.|..+ ..+-.....--+....+++.+++||... +..-|-.-. +|.+... +..|+.+.++.+.+.+-
T Consensus 32 ~p~~~v--elp~~s~~l~ia~~~~g~~gwlVg~rgt------iletdd~g~--tw~qal~---~~gr~~f~sv~f~~~eg 98 (339)
T COG4447 32 NPWTDV--ELPTLSPTLDIAFTESGSHGWLVGGRGT------ILETDDGGI--TWAQALD---FLGRHAFHSVSFLGMEG 98 (339)
T ss_pred Ccceee--eccccCcccceeEeecCcceEEEcCcce------EEEecCCcc--cchhhhc---hhhhhheeeeeeecccc
Q ss_pred EEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCC
Q 048754 424 VVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDE 503 (625)
Q Consensus 424 yv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~ 503 (625)
++.|- .-.++.......+|.+++.. ...+-.-.+...+++++-+++|-... +|...+.
T Consensus 99 w~vGe---------~sqll~T~DgGqsWARi~~~-e~~eg~~~sI~f~d~q~g~m~gd~Ga------------il~T~Dg 156 (339)
T COG4447 99 WIVGE---------PSQLLHTTDGGQSWARIPLS-EKLEGFPDSITFLDDQRGEMLGDQGA------------ILKTTDG 156 (339)
T ss_pred cccCC---------cceEEEecCCCcchhhchhh-cCCCCCcceeEEecchhhhhhcccce------------EEEecCC
Q ss_pred CCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEe
Q 048754 504 EPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFG 546 (625)
Q Consensus 504 ~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G 546 (625)
...|+.+... ..+....+.-+... ++..+++|
T Consensus 157 Gk~Wk~l~e~----------~v~~~~~n~ia~s~-dng~vaVg 188 (339)
T COG4447 157 GKNWKALVEK----------AVGLAVPNEIARSA-DNGYVAVG 188 (339)
T ss_pred cccHhHhccc----------ccchhhhhhhhhhc-cCCeEEEe
No 246
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=27.48 E-value=7.1e+02 Score=26.71 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=0.0
Q ss_pred CCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCc
Q 048754 409 PRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHL 488 (625)
Q Consensus 409 ~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~ 488 (625)
|+++...+...-++=..+|| ..+++|.||++.+. |-..-. .-.+-..+..+.-.. .|+.+||.+
T Consensus 133 P~~GRDm~y~~~scDly~~g------sg~evYRlNLEqGr--fL~P~~--~~~~~lN~v~in~~h-gLla~Gt~~----- 196 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVG------SGSEVYRLNLEQGR--FLNPFE--TDSGELNVVSINEEH-GLLACGTED----- 196 (703)
T ss_pred CcCCccccccCCCccEEEee------cCcceEEEEccccc--cccccc--cccccceeeeecCcc-ceEEecccC-----
Q ss_pred ccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 489 RLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 489 ~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
..+..+|+-+ ...-..+...............|.. +++.+.++-|-|.=|.+ ...+++||+
T Consensus 197 ----g~VEfwDpR~-ksrv~~l~~~~~v~s~pg~~~~~sv----Tal~F~d~gL~~aVGts-----~G~v~iyDL 257 (703)
T KOG2321|consen 197 ----GVVEFWDPRD-KSRVGTLDAASSVNSHPGGDAAPSV----TALKFRDDGLHVAVGTS-----TGSVLIYDL 257 (703)
T ss_pred ----ceEEEecchh-hhhheeeecccccCCCccccccCcc----eEEEecCCceeEEeecc-----CCcEEEEEc
No 247
>PTZ00420 coronin; Provisional
Probab=26.48 E-value=8.7e+02 Score=26.47 Aligned_cols=64 Identities=11% Similarity=0.165 Sum_probs=32.4
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
+..+++.||.+ ..+.++|+.+.+..+ .+.. +. .-.+.....++.+++.++.+ ..+.+||+.+.
T Consensus 137 g~~iLaSgS~D-----gtIrIWDl~tg~~~~-~i~~---~~--~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg 199 (568)
T PTZ00420 137 NYYIMCSSGFD-----SFVNIWDIENEKRAF-QINM---PK--KLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQ 199 (568)
T ss_pred CCeEEEEEeCC-----CeEEEEECCCCcEEE-EEec---CC--cEEEEEECCCCCEEEEEecC------CEEEEEECCCC
Confidence 33455666654 357888988773222 2211 11 11222222344566665532 35788997654
Q ss_pred C
Q 048754 448 K 448 (625)
Q Consensus 448 ~ 448 (625)
.
T Consensus 200 ~ 200 (568)
T PTZ00420 200 E 200 (568)
T ss_pred c
Confidence 3
No 248
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=25.17 E-value=1e+02 Score=17.96 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=13.9
Q ss_pred CcceEEEECCcEEEEEcC
Q 048754 584 WGHSTCVVGGTRVLVLGG 601 (625)
Q Consensus 584 ~~~~~~~~~~~~i~i~GG 601 (625)
..|++++..++.+|.+|-
T Consensus 8 ~~ht~al~~~g~v~~wG~ 25 (30)
T PF13540_consen 8 GYHTCALTSDGEVYCWGD 25 (30)
T ss_dssp SSEEEEEE-TTEEEEEE-
T ss_pred CCEEEEEEcCCCEEEEcC
Confidence 468888888899999994
No 249
>KOG1229 consensus 3'5'-cyclic nucleotide phosphodiesterases [Signal transduction mechanisms]
Probab=24.29 E-value=16 Score=36.59 Aligned_cols=42 Identities=12% Similarity=0.208 Sum_probs=31.2
Q ss_pred ccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchh
Q 048754 190 DQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRD 232 (625)
Q Consensus 190 ~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~ 232 (625)
.+++.+++++..+.|||+++++|.|+- .|++|... +-+|..+
T Consensus 167 ~eAiEI~~ddhViQYVNpAfE~mmG~hkgEliGke~-adlpkkd 209 (775)
T KOG1229|consen 167 DEAIEICDDDHVIQYVNPAFENMMGCHKGELIGKEE-ADLPKKD 209 (775)
T ss_pred hhhheeccchhHHHHhcHHHHhhhcchhhhhcCCch-hhccccc
Confidence 566666777777779999999999998 88886554 4444433
No 250
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=23.53 E-value=8.1e+02 Score=25.11 Aligned_cols=196 Identities=15% Similarity=0.113 Sum_probs=88.9
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCC-----ceeceEEEEecCCCCCceEEcCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAG-----VLLSDTYLLDLTTDKPMWREIPTSW 458 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~~d~~~~~~~W~~~~~~~ 458 (625)
..++++|+.++ +...-. .+.+... +.+..++++.+++....... .....++...+.+....=..+-.
T Consensus 150 ~~l~v~Dl~tg--~~l~d~---i~~~~~~-~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe-- 221 (414)
T PF02897_consen 150 YTLRVFDLETG--KFLPDG---IENPKFS-SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFE-- 221 (414)
T ss_dssp EEEEEEETTTT--EEEEEE---EEEEESE-EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC--
T ss_pred EEEEEEECCCC--cCcCCc---ccccccc-eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEe--
Confidence 46999999998 443211 0112221 13344443455544433322 13568888887654422112211
Q ss_pred CCCCCC-cceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCCC---CCceeEeeeccccCcCCCCCCCCCCccceE
Q 048754 459 SPPSRL-GHSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDE---EPQWKQLECNAFTGVGSQSAVVPPPRLDHV 533 (625)
Q Consensus 459 ~p~~r~-~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~---~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~ 533 (625)
.+.... ...+..-.++ .|++.-..... .+++|.+|+... ...|..+... .. ....
T Consensus 222 ~~~~~~~~~~~~~s~d~~~l~i~~~~~~~------~s~v~~~d~~~~~~~~~~~~~l~~~-------------~~-~~~~ 281 (414)
T PF02897_consen 222 EPDEPFWFVSVSRSKDGRYLFISSSSGTS------ESEVYLLDLDDGGSPDAKPKLLSPR-------------ED-GVEY 281 (414)
T ss_dssp -TTCTTSEEEEEE-TTSSEEEEEEESSSS------EEEEEEEECCCTTTSS-SEEEEEES-------------SS-S-EE
T ss_pred ecCCCcEEEEEEecCcccEEEEEEEcccc------CCeEEEEeccccCCCcCCcEEEeCC-------------CC-ceEE
Confidence 111222 2233333333 44443222211 178999999842 3478887643 11 1122
Q ss_pred EEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCC-CCeEEEcCCCCCCCCC-CcceEEEECCcEEEEEcCcCCCCCccCc
Q 048754 534 AVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEK-PSWRILNVPGQPPKFA-WGHSTCVVGGTRVLVLGGHTGEEWVLNE 611 (625)
Q Consensus 534 ~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~-~~W~~v~~~~~~p~~r-~~~~~~~~~~~~i~i~GG~~~~~~~~~d 611 (625)
.+...++.+|+.-.. ......|+.+++.... ..|..+-. .+... .-..+.+.. +.|++.-=.++ ...
T Consensus 282 ~v~~~~~~~yi~Tn~---~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~~-~~Lvl~~~~~~----~~~ 350 (414)
T PF02897_consen 282 YVDHHGDRLYILTND---DAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLFK-DYLVLSYRENG----SSR 350 (414)
T ss_dssp EEEEETTEEEEEE-T---T-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEET-TEEEEEEEETT----EEE
T ss_pred EEEccCCEEEEeeCC---CCCCcEEEEecccccccccceeEEc---CCCCceeEEEEEEEC-CEEEEEEEECC----ccE
Confidence 233338889988552 2235689999984211 13664422 11111 122333333 46666543222 355
Q ss_pred eEEEEcc
Q 048754 612 LHELCLA 618 (625)
Q Consensus 612 ~~~~~~~ 618 (625)
|.++++.
T Consensus 351 l~v~~~~ 357 (414)
T PF02897_consen 351 LRVYDLD 357 (414)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 6666655
No 251
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=22.72 E-value=5.7e+02 Score=23.03 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=40.8
Q ss_pred CcCCCCceeceEEEEecCCCCCceEEcCCCC---CCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCC
Q 048754 428 GCTDAGVLLSDTYLLDLTTDKPMWREIPTSW---SPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEE 504 (625)
Q Consensus 428 G~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~---~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~ 504 (625)
|.....+-..++|++|..+.. |..+.... -..|. -+..+++..|.++=|....... .-..||.|++.+
T Consensus 79 g~~a~eEgiGkIYIkn~~~~~--~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~a~GTvS--~GGnLy~~nl~t-- 149 (200)
T PF15525_consen 79 GPEAEEEGIGKIYIKNLNNNN--WWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGYAHGTVS--KGGNLYKYNLNT-- 149 (200)
T ss_pred CCccccccceeEEEEecCCCc--eEEEEecCcccccCCc---eeEEecCCcEEEEEccccceEc--cCCeEEEEEccC--
Confidence 434444566789999976665 55442211 12233 2556766555444343221111 137899999984
Q ss_pred CceeEeee
Q 048754 505 PQWKQLEC 512 (625)
Q Consensus 505 ~~W~~~~~ 512 (625)
..-+.+..
T Consensus 150 g~~~~ly~ 157 (200)
T PF15525_consen 150 GNLTELYE 157 (200)
T ss_pred CceeEeee
Confidence 45555543
No 252
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=22.43 E-value=3.7e+02 Score=28.42 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=28.2
Q ss_pred ceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCC
Q 048754 434 VLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSG 486 (625)
Q Consensus 434 ~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~ 486 (625)
..++.++.+|++++. - +.. ......++.+.....+ .+++++|..+++
T Consensus 372 ~~ls~LvllD~~tg~--~--l~~-S~~~~Ir~r~~~~~~~-~~vaI~g~~G~~ 418 (489)
T PF05262_consen 372 HYLSELVLLDSDTGD--T--LKR-SPVNGIRGRTFYERED-DLVAIAGCSGNA 418 (489)
T ss_pred CcceeEEEEeCCCCc--e--ecc-cccceeccceeEEcCC-CEEEEeccCCch
Confidence 467889999987754 1 111 1223444455555555 788888885443
No 253
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=22.36 E-value=4.1e+02 Score=26.56 Aligned_cols=67 Identities=19% Similarity=0.318 Sum_probs=35.3
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEE-EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEec
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWI-EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDL 444 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~ 444 (625)
++.++++|+= ..++|+||+.+. +-- .+.. .+|.++.-.+...-.++....+=|... ..++.+||.
T Consensus 95 mNr~RLvV~L-------ee~IyIydI~~M--klLhTI~t-~~~n~~gl~AlS~n~~n~ylAyp~s~t----~GdV~l~d~ 160 (391)
T KOG2110|consen 95 MNRKRLVVCL-------EESIYIYDIKDM--KLLHTIET-TPPNPKGLCALSPNNANCYLAYPGSTT----SGDVVLFDT 160 (391)
T ss_pred EccceEEEEE-------cccEEEEecccc--eeehhhhc-cCCCccceEeeccCCCCceEEecCCCC----CceEEEEEc
Confidence 4455666652 246999999876 433 2222 224444332332223444555555443 358889985
Q ss_pred CC
Q 048754 445 TT 446 (625)
Q Consensus 445 ~~ 446 (625)
.+
T Consensus 161 ~n 162 (391)
T KOG2110|consen 161 IN 162 (391)
T ss_pred cc
Confidence 43
No 254
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=22.36 E-value=8.3e+02 Score=24.80 Aligned_cols=180 Identities=18% Similarity=0.224 Sum_probs=80.2
Q ss_pred CeEEEeccCCCCceEEcccCCCCCCccceeEEEE--cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCC
Q 048754 333 DTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL--NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPR 410 (625)
Q Consensus 333 ~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r 410 (625)
.+.++|..+. ..-.+++.. ..-|....+ ++.++|+.+. + ..+.++|+.+.+ .-..+..+ ..++
T Consensus 17 ~v~viD~~t~-~~~~~i~~~-----~~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~-~v~~i~~G--~~~~ 81 (369)
T PF02239_consen 17 SVAVIDGATN-KVVARIPTG-----GAPHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGK-VVATIKVG--GNPR 81 (369)
T ss_dssp EEEEEETTT--SEEEEEE-S-----TTEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSS-EEEEEE-S--SEEE
T ss_pred EEEEEECCCC-eEEEEEcCC-----CCceeEEEecCCCCEEEEEcC-C-----CeEEEEECCccc-EEEEEecC--CCcc
Confidence 4888888763 123344211 111544433 4678999863 2 358999998884 23344433 1122
Q ss_pred ccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCC----CCCCCcceEEEECCcEEEEEcCCcCCC
Q 048754 411 SWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWS----PPSRLGHSLSVYGRTKVLMFGGLAKSG 486 (625)
Q Consensus 411 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~----p~~r~~~~~~~~~~~~l~v~GG~~~~~ 486 (625)
. .+..-+++.+|+ +.+ ..+.+.++|..+.+ .-..++..+. +.+|.. +.+....+..|++--.
T Consensus 82 ~--i~~s~DG~~~~v-~n~-----~~~~v~v~D~~tle-~v~~I~~~~~~~~~~~~Rv~-aIv~s~~~~~fVv~lk---- 147 (369)
T PF02239_consen 82 G--IAVSPDGKYVYV-ANY-----EPGTVSVIDAETLE-PVKTIPTGGMPVDGPESRVA-AIVASPGRPEFVVNLK---- 147 (369)
T ss_dssp E--EEE--TTTEEEE-EEE-----ETTEEEEEETTT---EEEEEE--EE-TTTS---EE-EEEE-SSSSEEEEEET----
T ss_pred e--EEEcCCCCEEEE-Eec-----CCCceeEecccccc-ceeecccccccccccCCCce-eEEecCCCCEEEEEEc----
Confidence 1 233345655555 332 33578889954422 1223332222 223321 1111222233444211
Q ss_pred CcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 487 HLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 487 ~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
...++|..|.... .-..+... ...+..|-...-.+++.++.+-. ..+.+-++|.+
T Consensus 148 ----d~~~I~vVdy~d~--~~~~~~~i------------~~g~~~~D~~~dpdgry~~va~~-----~sn~i~viD~~ 202 (369)
T PF02239_consen 148 ----DTGEIWVVDYSDP--KNLKVTTI------------KVGRFPHDGGFDPDGRYFLVAAN-----GSNKIAVIDTK 202 (369)
T ss_dssp ----TTTEEEEEETTTS--SCEEEEEE------------E--TTEEEEEE-TTSSEEEEEEG-----GGTEEEEEETT
T ss_pred ----cCCeEEEEEeccc--cccceeee------------cccccccccccCcccceeeeccc-----ccceeEEEeec
Confidence 1478999998742 21122222 33455555555545555554322 14477788873
No 255
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=21.95 E-value=9.6e+02 Score=25.38 Aligned_cols=123 Identities=17% Similarity=0.163 Sum_probs=63.2
Q ss_pred CCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCC---CCCCCCCcceEEEE-CCcEEEEEcCCc
Q 048754 408 LPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTS---WSPPSRLGHSLSVY-GRTKVLMFGGLA 483 (625)
Q Consensus 408 ~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~---~~p~~r~~~~~~~~-~~~~l~v~GG~~ 483 (625)
..|...+.|.++...-.|.+|+.++ ++..++. .. |..-+.. ..-.+-..-+++.+ .+++.++.-|.+
T Consensus 315 g~Rv~~tsC~~nrdg~~iAagc~DG-----SIQ~W~~--~~--~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D 385 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIAAGCLDG-----SIQIWDK--GS--RTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD 385 (641)
T ss_pred CcccCceeeecCCCcchhhhcccCC-----ceeeeec--CC--cccccceEeeeccCCCCceeEEEeccccchhhhccCC
Confidence 4666677788755444577887654 4555553 22 4433220 01112122233333 233555554543
Q ss_pred CCCCcccccCceEEEEcCC---CCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEE
Q 048754 484 KSGHLRLRSGESYTIDLGD---EEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFL 560 (625)
Q Consensus 484 ~~~~~~~~~~~~~~~d~~~---~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~ 560 (625)
+.+.++|+.. .-+.|+-+. .+-...-++...+++|++.|-...+......++.
T Consensus 386 ---------~tLKvWDLrq~kkpL~~~tgL~---------------t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f 441 (641)
T KOG0772|consen 386 ---------DTLKVWDLRQFKKPLNVRTGLP---------------TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFF 441 (641)
T ss_pred ---------CceeeeeccccccchhhhcCCC---------------ccCCCCccccCCCceEEEecccccCCCCCceEEE
Confidence 4445555542 112344433 2222333444458889998877666655678899
Q ss_pred EeC
Q 048754 561 LDP 563 (625)
Q Consensus 561 ~d~ 563 (625)
||.
T Consensus 442 ~d~ 444 (641)
T KOG0772|consen 442 FDR 444 (641)
T ss_pred Eec
Confidence 986
No 256
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=21.67 E-value=96 Score=17.64 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=15.8
Q ss_pred CCcceEEEECCcEEEEEcCcCCC
Q 048754 583 AWGHSTCVVGGTRVLVLGGHTGE 605 (625)
Q Consensus 583 r~~~~~~~~~~~~i~i~GG~~~~ 605 (625)
+..|+-+++-|++..++|+.+-.
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~ 25 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLD 25 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCC
Confidence 34567666656689999987643
No 257
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=21.56 E-value=2.1e+02 Score=19.77 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=21.9
Q ss_pred ceEEEECCcEEEEEcCcCCCCCccCceEEEEccCCCC
Q 048754 586 HSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQD 622 (625)
Q Consensus 586 ~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~~~ 622 (625)
+++.+.++++|++.|-..... ...+..+.+++++..
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~~-~~~~~~l~Rln~DGs 39 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNSS-GNNDFVLARLNADGS 39 (55)
T ss_pred EEEEECCCCcEEEEEEeecCC-CcccEEEEEECCCCC
Confidence 455566678999988654321 235666666665543
No 258
>PF14830 Haemocyan_bet_s: Haemocyanin beta-sandwich; PDB: 1JS8_B 3QJO_A 1LNL_A.
Probab=21.50 E-value=80 Score=25.09 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=14.1
Q ss_pred cEEEEEcCcCCCCCccCceEEEEcc
Q 048754 594 TRVLVLGGHTGEEWVLNELHELCLA 618 (625)
Q Consensus 594 ~~i~i~GG~~~~~~~~~d~~~~~~~ 618 (625)
+.++|.||....-+.++-+|+|+|.
T Consensus 37 G~F~vLGG~~EMpW~FdRlykydIT 61 (103)
T PF14830_consen 37 GTFFVLGGEKEMPWAFDRLYKYDIT 61 (103)
T ss_dssp EEEEE---TTS---B-SS-EEEE-H
T ss_pred cEEEEcCCCccCccccCccchhhHH
Confidence 5999999998888889999999985
No 259
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=21.38 E-value=1.1e+03 Score=25.82 Aligned_cols=252 Identities=12% Similarity=0.133 Sum_probs=0.0
Q ss_pred cceEEECC-EEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEE
Q 048754 309 FSACAAGN-RLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVF 387 (625)
Q Consensus 309 ~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 387 (625)
.++++.++ .-++.+|.++. +..|...+...+|.... .....++.--+++++.. +.+.|| .|..
T Consensus 249 l~Lav~~~~d~vfsaGvd~~------ii~~~~~~~~~~wv~~~-~r~~h~hdvrs~av~~~--~l~sgG-------~d~~ 312 (691)
T KOG2048|consen 249 LALAVADNEDRVFSAGVDPK------IIQYSLTTNKSEWVINS-RRDLHAHDVRSMAVIEN--ALISGG-------RDFT 312 (691)
T ss_pred eEEEEcCCCCeEEEccCCCc------eEEEEecCCccceeeec-cccCCcccceeeeeecc--eEEecc-------eeeE
Q ss_pred EEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC----CCceEEcCCCCCCCCC
Q 048754 388 VLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD----KPMWREIPTSWSPPSR 463 (625)
Q Consensus 388 ~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~----~~~W~~~~~~~~p~~r 463 (625)
++=....+.+-..-. +..+.++..-..+.- .+++++.= ..+.+....+.+. ...-..+-.-..+..+
T Consensus 313 l~i~~s~~~~~~~h~-~~~~~p~~~~v~~a~-~~~L~~~w-------~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~ 383 (691)
T KOG2048|consen 313 LAICSSREFKNMDHR-QKNLFPASDRVSVAP-ENRLLVLW-------KAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKE 383 (691)
T ss_pred EEEccccccCchhhh-ccccccccceeecCc-cceEEEEe-------ccccccceeccCcccccccChhhheeeecCCcc
Q ss_pred CcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEec--CCE
Q 048754 464 LGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMP--CGR 541 (625)
Q Consensus 464 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~--~~~ 541 (625)
.-.+++...++.++.+|-... -.+|.+.++. ..+-+.+..+ |..+...+..... +++
T Consensus 384 nIs~~aiSPdg~~Ia~st~~~--------~~iy~L~~~~-~vk~~~v~~~------------~~~~~~a~~i~ftid~~k 442 (691)
T KOG2048|consen 384 NISCAAISPDGNLIAISTVSR--------TKIYRLQPDP-NVKVINVDDV------------PLALLDASAISFTIDKNK 442 (691)
T ss_pred ceeeeccCCCCCEEEEeeccc--------eEEEEeccCc-ceeEEEeccc------------hhhhccceeeEEEecCce
Q ss_pred EEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCC-CCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 542 IIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQP-PKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 542 l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~-p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
++++- ...-++..+++ ++.+-+.+...... -.+-..+-++.-.++.|.++++ ..+|++|++++.
T Consensus 443 ~~~~s------~~~~~le~~el--~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t-------~g~I~v~nl~~~ 507 (691)
T KOG2048|consen 443 LFLVS------KNIFSLEEFEL--ETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST-------RGQIFVYNLETL 507 (691)
T ss_pred EEEEe------cccceeEEEEe--cCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec-------cceEEEEEcccc
Q ss_pred C
Q 048754 621 Q 621 (625)
Q Consensus 621 ~ 621 (625)
+
T Consensus 508 ~ 508 (691)
T KOG2048|consen 508 E 508 (691)
T ss_pred e
No 260
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=21.22 E-value=8.4e+02 Score=24.42 Aligned_cols=261 Identities=16% Similarity=0.085 Sum_probs=0.0
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccC----CCCCccccEEEEEC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGC----GRQGLLNDVFVLDL 391 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~----~~~~~~~~~~~~d~ 391 (625)
+++||.--...... ..++++|.++ .+-. ...+..-.++.+..-+++.+|+..=+ ......+-+.+||.
T Consensus 3 ~rvyV~D~~~~~~~--~rv~viD~d~--~k~l----Gmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~ 74 (342)
T PF06433_consen 3 HRVYVQDPVFFHMT--SRVYVIDADS--GKLL----GMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDT 74 (342)
T ss_dssp TEEEEEE-GGGGSS--EEEEEEETTT--TEEE----EEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEET
T ss_pred cEEEEECCcccccc--ceEEEEECCC--CcEE----EEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEec
Q ss_pred CCCCCEEEEcCCCC---CCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceE
Q 048754 392 DAKQPTWIEVSGGA---PPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSL 468 (625)
Q Consensus 392 ~t~~~~W~~~~~~~---~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~ 468 (625)
.|-+.+++..-+.. .-.+..+..+..-+++.+|| .+-++..+|-+.|++... .... .+.|-|.+.-
T Consensus 75 ~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V-----~N~TPa~SVtVVDl~~~k--vv~e----i~~PGC~~iy 143 (342)
T PF06433_consen 75 QTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYV-----QNFTPATSVTVVDLAAKK--VVGE----IDTPGCWLIY 143 (342)
T ss_dssp TTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEE-----EEESSSEEEEEEETTTTE--EEEE----EEGTSEEEEE
T ss_pred CcCcccceEecCCcchheecccccceEEccCCcEEEE-----EccCCCCeEEEEECCCCc--eeee----ecCCCEEEEE
Q ss_pred EEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecC
Q 048754 469 SVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGS 548 (625)
Q Consensus 469 ~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~ 548 (625)
-.-.+ .++.++|- ..+..+.+..+.+.=++.... ......|.+.+.+....++.+|-+
T Consensus 144 P~~~~-~F~~lC~D----------Gsl~~v~Ld~~Gk~~~~~t~~--------F~~~~dp~f~~~~~~~~~~~~~F~--- 201 (342)
T PF06433_consen 144 PSGNR-GFSMLCGD----------GSLLTVTLDADGKEAQKSTKV--------FDPDDDPLFEHPAYSRDGGRLYFV--- 201 (342)
T ss_dssp EEETT-EEEEEETT----------SCEEEEEETSTSSEEEEEEEE--------SSTTTS-B-S--EEETTTTEEEEE---
T ss_pred ecCCC-ceEEEecC----------CceEEEEECCCCCEeEeeccc--------cCCCCcccccccceECCCCeEEEE---
Q ss_pred CCCCCCCCcEEEEeCCCCCCCeEEEcCC-------CCCCCCCCcceEEEECCcEEEE---EcCcCCCCCccCceEEEEcc
Q 048754 549 IAGLHSPSQLFLLDPSEEKPSWRILNVP-------GQPPKFAWGHSTCVVGGTRVLV---LGGHTGEEWVLNELHELCLA 618 (625)
Q Consensus 549 ~~~~~~~~~v~~~d~~~~~~~W~~v~~~-------~~~p~~r~~~~~~~~~~~~i~i---~GG~~~~~~~~~d~~~~~~~ 618 (625)
.+...|+..|++.+.-.|...-.. ..-.++-+...++--..++||| =|+...-...-.+||+||++
T Consensus 202 ----Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 202 ----SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp ----BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred ----ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Q ss_pred CCC
Q 048754 619 SKQ 621 (625)
Q Consensus 619 ~~~ 621 (625)
+.+
T Consensus 278 t~k 280 (342)
T PF06433_consen 278 THK 280 (342)
T ss_dssp TTE
T ss_pred CCe
No 261
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=20.96 E-value=9.3e+02 Score=24.84 Aligned_cols=80 Identities=15% Similarity=0.161 Sum_probs=47.9
Q ss_pred CcccceEEECCEEEEEcc---cCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCc
Q 048754 306 RCNFSACAAGNRLVLFGG---EGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGL 382 (625)
Q Consensus 306 r~~~~~~~~~~~lyv~GG---~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~ 382 (625)
...+++...++++=+.-- +....+..|++|++|-+- +---++. +-.|..|... +-+.++.+|++.=. -
T Consensus 377 ln~f~~deyngylRvaTt~~dW~~~de~~N~vYilDe~l--nvvGklt-Gl~~gERIYA--vRf~gdv~yiVTfr----q 447 (603)
T COG4880 377 LNSFDGDEYNGYLRVATTLSDWTSEDEPVNAVYILDENL--NVVGKLT-GLAPGERIYA--VRFVGDVLYIVTFR----Q 447 (603)
T ss_pred hhcccCcccceEEEEEeeecccccCCCccceeEEEcCCC--cEEEEEe-ccCCCceEEE--EEEeCceEEEEEEe----c
Confidence 445666677777666543 344567889999999765 3444442 2234456532 23446778887532 2
Q ss_pred cccEEEEECCCC
Q 048754 383 LNDVFVLDLDAK 394 (625)
Q Consensus 383 ~~~~~~~d~~t~ 394 (625)
++-+++.|+...
T Consensus 448 tDPlfviDlsNP 459 (603)
T COG4880 448 TDPLFVIDLSNP 459 (603)
T ss_pred cCceEEEEcCCC
Confidence 355788887654
No 262
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=20.39 E-value=1.1e+03 Score=25.36 Aligned_cols=106 Identities=14% Similarity=0.130 Sum_probs=56.7
Q ss_pred CCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCC
Q 048754 329 QPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPP 407 (625)
Q Consensus 329 ~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p 407 (625)
...-+..+|++.. ++-+++.....|.+- .-.+++. .....+++|-.++ .+-+||..++..++.+.. ..|
T Consensus 233 ~~~~d~ciYE~~r--~klqrvsvtsipL~s-~v~~ca~sp~E~kLvlGC~Dg-----SiiLyD~~~~~t~~~ka~--~~P 302 (545)
T PF11768_consen 233 EPSADSCIYECSR--NKLQRVSVTSIPLPS-QVICCARSPSEDKLVLGCEDG-----SIILYDTTRGVTLLAKAE--FIP 302 (545)
T ss_pred CceeEEEEEEeec--CceeEEEEEEEecCC-cceEEecCcccceEEEEecCC-----eEEEEEcCCCeeeeeeec--ccc
Confidence 3445566777765 455555434333321 1222222 3345777776544 588999887743444333 223
Q ss_pred CCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcC
Q 048754 408 LPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIP 455 (625)
Q Consensus 408 ~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 455 (625)
.-.. ...++.++++|+.. ..+.+||..-+..+-.-+.
T Consensus 303 ~~ia-----WHp~gai~~V~s~q------GelQ~FD~ALspi~~qLls 339 (545)
T PF11768_consen 303 TLIA-----WHPDGAIFVVGSEQ------GELQCFDMALSPIKMQLLS 339 (545)
T ss_pred eEEE-----EcCCCcEEEEEcCC------ceEEEEEeecCccceeecc
Confidence 2222 22345788887732 3789999766554444443
No 263
>PRK01742 tolB translocation protein TolB; Provisional
Probab=20.07 E-value=9.8e+02 Score=24.77 Aligned_cols=105 Identities=15% Similarity=0.081 Sum_probs=46.3
Q ss_pred cccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCC
Q 048754 383 LNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPS 462 (625)
Q Consensus 383 ~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~ 462 (625)
...+++.|.+.. .-..+.... .........-+++.+ ++...... ...++++|+.+.. -+.+.. .+.
T Consensus 183 ~~~i~i~d~dg~--~~~~lt~~~---~~v~~p~wSPDG~~l-a~~s~~~~---~~~i~i~dl~tg~--~~~l~~--~~g- 248 (429)
T PRK01742 183 PYEVRVADYDGF--NQFIVNRSS---QPLMSPAWSPDGSKL-AYVSFENK---KSQLVVHDLRSGA--RKVVAS--FRG- 248 (429)
T ss_pred eEEEEEECCCCC--CceEeccCC---CccccceEcCCCCEE-EEEEecCC---CcEEEEEeCCCCc--eEEEec--CCC-
Confidence 357888887654 222333221 111112222245444 44332221 2468889986654 444432 111
Q ss_pred CCcceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEee
Q 048754 463 RLGHSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLE 511 (625)
Q Consensus 463 r~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~ 511 (625)
.........++ .|++....+ + ..++|.+|+. +.....+.
T Consensus 249 -~~~~~~wSPDG~~La~~~~~~--g-----~~~Iy~~d~~--~~~~~~lt 288 (429)
T PRK01742 249 -HNGAPAFSPDGSRLAFASSKD--G-----VLNIYVMGAN--GGTPSQLT 288 (429)
T ss_pred -ccCceeECCCCCEEEEEEecC--C-----cEEEEEEECC--CCCeEeec
Confidence 11123333343 444432221 1 2468889987 33444443
Done!