Query 048754
Match_columns 625
No_of_seqs 410 out of 4519
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 22:27:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048754.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048754hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zgk_A Kelch-like ECH-associat 100.0 1.2E-40 4.1E-45 331.3 32.6 279 300-623 9-291 (308)
2 2uvk_A YJHT; unknown function, 100.0 4.1E-40 1.4E-44 334.9 29.0 286 301-623 5-346 (357)
3 2xn4_A Kelch-like protein 2; s 100.0 1.4E-38 4.7E-43 315.7 35.6 271 310-623 10-280 (302)
4 2xn4_A Kelch-like protein 2; s 100.0 1.5E-38 5.1E-43 315.5 35.5 268 283-593 32-300 (302)
5 3ii7_A Kelch-like protein 7; p 100.0 1.2E-38 4E-43 316.8 33.6 266 315-623 11-276 (306)
6 1zgk_A Kelch-like ECH-associat 100.0 1.2E-38 4.2E-43 316.8 32.5 265 283-591 41-308 (308)
7 3ii7_A Kelch-like protein 7; p 100.0 2.2E-38 7.5E-43 314.9 31.8 267 282-593 25-295 (306)
8 2vpj_A Kelch-like protein 12; 100.0 3.6E-38 1.2E-42 312.6 32.5 268 313-623 12-282 (301)
9 4asc_A Kelch repeat and BTB do 100.0 3.7E-39 1.3E-43 321.7 24.1 278 281-602 13-306 (315)
10 2woz_A Kelch repeat and BTB do 100.0 1E-38 3.6E-43 318.9 26.0 278 279-600 22-314 (318)
11 2vpj_A Kelch-like protein 12; 100.0 1E-37 3.5E-42 309.3 31.6 265 283-592 33-300 (301)
12 4asc_A Kelch repeat and BTB do 100.0 4.1E-37 1.4E-41 306.9 26.7 262 315-623 4-281 (315)
13 2zwa_A Leucine carboxyl methyl 100.0 1.5E-36 5E-41 332.6 30.6 287 301-619 384-694 (695)
14 2woz_A Kelch repeat and BTB do 100.0 4.9E-36 1.7E-40 299.5 29.4 270 304-623 7-291 (318)
15 2uvk_A YJHT; unknown function, 100.0 3.4E-34 1.2E-38 291.3 27.4 262 283-574 33-349 (357)
16 2zwa_A Leucine carboxyl methyl 100.0 2.8E-30 9.5E-35 282.9 26.6 240 352-622 383-638 (695)
17 1k3i_A Galactose oxidase precu 100.0 4.3E-30 1.5E-34 281.7 23.8 306 283-622 168-500 (656)
18 1k3i_A Galactose oxidase precu 100.0 3E-28 1E-32 267.1 22.1 300 283-618 221-548 (656)
19 3ewk_A Sensor protein; PAS dom 99.8 6.5E-19 2.2E-23 166.1 12.5 164 57-234 2-166 (227)
20 2gj3_A Nitrogen fixation regul 99.6 1.5E-15 5.1E-20 127.1 12.7 115 43-171 6-120 (120)
21 1n9l_A PHOT-LOV1, putative blu 99.6 8E-15 2.7E-19 120.3 15.4 108 53-169 2-109 (109)
22 2pr5_A Blue-light photorecepto 99.6 1.7E-14 5.8E-19 122.9 12.9 111 51-175 6-119 (132)
23 3f1p_B ARYL hydrocarbon recept 99.6 1.9E-14 6.5E-19 120.4 12.3 110 51-172 9-120 (121)
24 3f1p_A Endothelial PAS domain- 99.5 2.2E-14 7.4E-19 119.2 10.5 108 53-172 8-116 (117)
25 4hia_A LOV protein; PAS, HTH, 99.5 2.8E-14 9.4E-19 128.2 9.5 121 41-175 6-129 (176)
26 3mr0_A Sensory box histidine k 99.5 5.5E-14 1.9E-18 121.4 10.2 113 53-175 18-130 (142)
27 3p7n_A Sensor histidine kinase 99.5 5.6E-14 1.9E-18 134.9 9.9 162 44-218 65-228 (258)
28 3ewk_A Sensor protein; PAS dom 99.5 1.4E-13 4.9E-18 129.3 12.4 127 26-166 95-227 (227)
29 3ue6_A Aureochrome1; PAS/LOV d 99.5 8.8E-14 3E-18 123.3 9.9 121 44-175 37-157 (166)
30 3h9w_A Diguanylate cyclase wit 99.5 1.9E-13 6.6E-18 113.0 10.0 112 53-175 2-114 (115)
31 3t50_A Blue-light-activated hi 99.5 1.1E-12 3.7E-17 110.6 14.4 117 51-176 4-120 (128)
32 4eet_B Phototropin-2; LOV, blu 99.4 2.3E-12 7.8E-17 105.9 15.4 112 51-171 4-115 (115)
33 2vv6_A FIXL, sensor protein FI 99.4 1.4E-12 4.9E-17 108.5 11.6 109 53-175 2-114 (119)
34 3nja_A Probable ggdef family p 99.4 1.4E-12 4.9E-17 109.0 11.5 114 45-172 10-125 (125)
35 3mqq_A Transcriptional regulat 99.4 4.5E-13 1.5E-17 111.7 6.2 113 46-173 7-119 (120)
36 2wkq_A NPH1-1, RAS-related C3 99.4 6.9E-12 2.4E-16 125.2 15.4 116 51-175 18-133 (332)
37 2r78_A Sensor protein; sensory 99.4 2.6E-12 8.9E-17 106.6 9.6 106 43-168 12-117 (117)
38 3lyx_A Sensory BOX/ggdef domai 99.3 9.2E-12 3.1E-16 103.2 12.3 115 44-172 9-123 (124)
39 2kdk_A ARYL hydrocarbon recept 99.3 2.3E-11 7.8E-16 101.3 14.4 108 52-171 11-120 (121)
40 3sw1_A Sensory box protein; li 99.3 2.4E-12 8E-17 113.5 8.5 120 42-175 25-147 (162)
41 2z6d_A Phototropin-2; PAS-fold 99.3 2.6E-11 8.9E-16 101.3 13.5 117 45-175 9-128 (130)
42 1d06_A Nitrogen fixation regul 99.3 3.9E-12 1.3E-16 107.7 8.3 105 50-168 22-130 (130)
43 3mxq_A Sensor protein; PSI2, M 99.3 2E-12 6.7E-17 111.8 5.6 115 44-173 24-150 (152)
44 3kx0_X Uncharacterized protein 99.3 7.7E-12 2.6E-16 113.2 9.3 118 43-176 38-161 (185)
45 2v0u_A NPH1-1, LOV2; kinase, t 99.3 1E-10 3.5E-15 100.0 15.1 117 46-173 6-122 (146)
46 3k3c_A Protein RV1364C/MT1410; 99.3 5.9E-12 2E-16 110.5 7.3 117 43-175 18-140 (158)
47 3luq_A Sensor protein; PAS, hi 99.3 3.6E-11 1.2E-15 98.4 11.3 107 46-168 7-114 (114)
48 1byw_A Protein (human ERG pota 99.3 1.8E-10 6.3E-15 92.9 15.2 107 55-170 2-110 (110)
49 3icy_A Sensor protein; sensory 99.2 1.3E-11 4.5E-16 102.0 6.6 111 46-168 8-118 (118)
50 3d72_A Vivid PAS protein VVD; 99.2 1.5E-10 5.2E-15 100.2 13.4 113 54-166 35-149 (149)
51 3olo_A Two-component sensor hi 99.2 2.3E-11 8E-16 100.4 7.3 113 35-168 6-118 (118)
52 4eho_A Bacteriophytochrome, PA 99.2 4.2E-12 1.4E-16 136.9 2.3 111 51-174 525-635 (635)
53 3eeh_A Putative light and redo 99.2 6.7E-11 2.3E-15 98.3 9.1 107 51-168 18-125 (125)
54 3mjq_A Uncharacterized protein 99.1 2.2E-10 7.7E-15 95.6 10.7 109 53-176 8-116 (126)
55 2l0w_A Potassium voltage-gated 99.1 1.6E-09 5.5E-14 91.5 13.0 112 50-170 25-138 (138)
56 4f3l_A Mclock, circadian locom 99.0 2.6E-10 8.8E-15 114.4 8.3 109 53-173 250-359 (361)
57 3mfx_A Sensory BOX/ggdef famil 99.0 2.5E-10 8.6E-15 96.0 6.5 110 44-170 9-125 (129)
58 3bwl_A Sensor protein; structu 99.0 1.3E-10 4.5E-15 97.4 4.5 105 45-168 20-126 (126)
59 1v9y_A Heme PAS sensor protein 99.0 6.5E-10 2.2E-14 98.0 9.2 116 44-175 42-161 (167)
60 3vol_A Aerotaxis transducer AE 99.0 4.2E-10 1.4E-14 105.5 8.0 108 44-175 24-143 (233)
61 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 9.6E-10 3.3E-14 111.1 9.5 108 53-172 277-386 (387)
62 2vlg_A Sporulation kinase A; h 99.0 1.3E-09 4.5E-14 88.7 8.2 89 51-155 6-95 (111)
63 3fg8_A Uncharacterized protein 98.9 4.1E-09 1.4E-13 87.1 10.4 105 44-170 14-118 (118)
64 2qkp_A Uncharacterized protein 98.9 4.1E-09 1.4E-13 91.0 9.3 115 44-175 21-138 (151)
65 4hi4_A Aerotaxis transducer AE 98.9 6.3E-09 2.2E-13 86.4 10.1 102 45-170 8-121 (121)
66 3rty_A Period circadian protei 98.9 1.6E-08 5.4E-13 99.2 14.2 160 58-242 7-207 (339)
67 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 3.4E-09 1.2E-13 107.0 9.0 169 52-240 94-329 (387)
68 3fc7_A HTR-like protein, senso 98.9 4.1E-09 1.4E-13 87.7 8.0 105 42-168 19-125 (125)
69 1ll8_A PAS kinase; PAS domain, 98.8 2.8E-09 9.6E-14 87.4 6.0 101 53-168 7-113 (114)
70 4f3l_A Mclock, circadian locom 98.8 9.1E-09 3.1E-13 103.1 10.2 167 53-240 95-302 (361)
71 3b33_A Sensor protein; structu 98.8 7E-09 2.4E-13 85.0 7.6 104 46-168 11-115 (115)
72 3a0r_A Sensor protein; four he 98.7 3.5E-08 1.2E-12 98.8 9.3 116 42-178 8-124 (349)
73 3a0s_A Sensor protein; PAS-fol 98.7 3.4E-07 1.2E-11 71.2 12.8 94 54-166 2-96 (96)
74 1mzu_A PPR; photoactive yellow 98.6 7.4E-07 2.5E-11 72.6 13.0 100 45-160 25-125 (129)
75 3cax_A Uncharacterized protein 98.6 8.8E-08 3E-12 96.0 8.9 111 45-175 242-352 (369)
76 3rty_A Period circadian protei 98.6 2.5E-07 8.7E-12 90.7 11.6 107 53-171 153-265 (339)
77 4dj3_A Period circadian protei 98.5 4.4E-07 1.5E-11 88.0 12.1 104 55-170 175-282 (317)
78 1nwz_A PYP, photoactive yellow 98.5 1.4E-06 4.8E-11 70.8 12.2 97 50-160 23-120 (125)
79 4dj3_A Period circadian protei 98.4 9.7E-07 3.3E-11 85.6 10.8 167 50-242 32-227 (317)
80 3gdi_A Period circadian protei 98.4 7.7E-07 2.6E-11 86.0 10.0 170 50-242 21-218 (309)
81 3gdi_A Period circadian protei 98.3 3E-06 1E-10 81.8 11.9 104 55-170 166-272 (309)
82 4dj2_A Period circadian protei 98.3 3.6E-06 1.2E-10 81.6 11.9 167 53-242 35-229 (320)
83 4dj2_A Period circadian protei 98.3 2.6E-06 9E-11 82.6 9.8 104 55-170 177-283 (320)
84 2w0n_A Sensor protein DCUS; si 98.2 1.4E-07 4.6E-12 77.2 -0.1 99 44-168 17-118 (118)
85 1p22_A F-BOX/WD-repeat protein 98.2 0.00018 6.1E-09 74.0 23.2 51 210-261 9-63 (435)
86 2jhe_A Transcription regulator 98.1 6.6E-07 2.2E-11 80.8 2.2 103 43-171 81-189 (190)
87 2ovr_B FBW7, F-BOX/WD repeat p 98.0 0.0029 9.8E-08 65.1 26.4 50 210-260 17-66 (445)
88 3q7m_A Lipoprotein YFGL, BAMB; 97.9 0.0053 1.8E-07 61.5 26.7 213 309-573 47-266 (376)
89 3v7d_B Cell division control p 97.9 0.0037 1.3E-07 64.6 24.9 50 210-260 13-63 (464)
90 3q7m_A Lipoprotein YFGL, BAMB; 97.8 0.022 7.6E-07 56.8 29.5 200 309-573 97-304 (376)
91 3no2_A Uncharacterized protein 97.6 0.0085 2.9E-07 57.1 21.1 223 316-600 5-230 (276)
92 2ykf_A Pdtas, probable sensor 96.7 1.2E-05 4.3E-10 77.8 0.0 111 51-175 177-291 (305)
93 3dsm_A Uncharacterized protein 97.5 0.091 3.1E-06 51.2 28.3 278 280-618 16-301 (328)
94 3dsm_A Uncharacterized protein 97.2 0.15 5.3E-06 49.6 25.5 230 331-620 16-254 (328)
95 3mbr_X Glutamine cyclotransfer 97.1 0.14 4.7E-06 47.0 21.9 194 366-618 28-234 (243)
96 1fs1_A SKP2 F-BOX, cyclin A/CD 96.8 0.00091 3.1E-08 45.3 3.3 46 209-255 6-51 (53)
97 3nol_A Glutamine cyclotransfer 96.7 0.26 8.7E-06 45.7 20.0 197 366-618 50-255 (262)
98 3vgz_A Uncharacterized protein 96.7 0.53 1.8E-05 45.7 27.5 198 315-570 100-306 (353)
99 1oj5_A Steroid receptor coacti 96.6 0.0059 2E-07 49.3 7.1 101 57-170 10-115 (132)
100 3bws_A Protein LP49; two-domai 96.6 0.4 1.4E-05 48.4 23.2 150 315-501 180-333 (433)
101 3hfq_A Uncharacterized protein 96.5 0.44 1.5E-05 46.4 22.5 66 315-392 50-116 (347)
102 1kb0_A Quinohemoprotein alcoho 96.5 0.32 1.1E-05 52.7 22.8 130 309-455 71-208 (677)
103 2hqs_A Protein TOLB; TOLB, PAL 96.5 0.45 1.6E-05 48.0 22.8 228 332-619 159-387 (415)
104 3nok_A Glutaminyl cyclase; bet 96.5 0.31 1.1E-05 45.1 19.2 150 366-569 62-212 (268)
105 1d06_A Nitrogen fixation regul 96.5 0.00042 1.4E-08 57.4 -0.3 52 183-234 16-71 (130)
106 1kb0_A Quinohemoprotein alcoho 96.4 0.68 2.3E-05 50.1 24.9 128 366-511 75-208 (677)
107 3vgz_A Uncharacterized protein 96.4 0.69 2.4E-05 44.9 23.3 157 315-502 52-215 (353)
108 2vlg_A Sporulation kinase A; h 96.4 0.00098 3.4E-08 53.6 1.8 44 194-237 13-57 (111)
109 1l0q_A Surface layer protein; 96.4 0.34 1.2E-05 48.1 21.1 228 316-619 2-233 (391)
110 3scy_A Hypothetical bacterial 96.4 0.59 2E-05 45.8 22.5 114 317-446 14-129 (361)
111 3mbr_X Glutamine cyclotransfer 96.4 0.32 1.1E-05 44.5 18.3 111 415-569 25-135 (243)
112 1l0q_A Surface layer protein; 96.3 0.56 1.9E-05 46.5 22.3 144 315-502 43-189 (391)
113 3hfq_A Uncharacterized protein 96.3 0.23 8E-06 48.5 19.0 144 333-501 17-170 (347)
114 3bws_A Protein LP49; two-domai 96.3 1 3.5E-05 45.2 24.5 245 315-619 133-390 (433)
115 3jrp_A Fusion protein of prote 96.2 0.79 2.7E-05 44.9 22.7 232 316-604 23-278 (379)
116 3nok_A Glutaminyl cyclase; bet 96.2 0.2 6.7E-06 46.5 16.0 109 414-569 58-166 (268)
117 2ad6_A Methanol dehydrogenase 96.2 0.64 2.2E-05 49.1 22.3 128 366-511 60-194 (571)
118 2ad6_A Methanol dehydrogenase 96.1 0.75 2.6E-05 48.6 22.6 132 309-455 56-194 (571)
119 3nol_A Glutamine cyclotransfer 96.1 0.15 5.2E-06 47.2 14.7 109 414-564 46-154 (262)
120 3no2_A Uncharacterized protein 96.1 0.47 1.6E-05 44.7 18.8 181 369-603 5-185 (276)
121 1gxr_A ESG1, transducin-like e 96.0 0.72 2.5E-05 44.3 20.7 180 367-604 107-287 (337)
122 2iwa_A Glutamine cyclotransfer 96.0 1 3.4E-05 42.0 21.3 204 361-620 24-238 (266)
123 3f1p_B ARYL hydrocarbon recept 95.9 0.0024 8.3E-08 51.8 1.8 43 195-237 17-60 (121)
124 3u4y_A Uncharacterized protein 95.9 0.73 2.5E-05 44.3 20.3 175 283-502 22-207 (331)
125 2xbg_A YCF48-like protein; pho 95.8 1.4 4.9E-05 42.6 25.9 246 291-601 66-311 (327)
126 3bwl_A Sensor protein; structu 95.8 0.00055 1.9E-08 56.1 -2.6 63 166-229 1-69 (126)
127 2ovr_B FBW7, F-BOX/WD repeat p 95.8 1.5 5.1E-05 44.4 22.8 234 315-620 208-443 (445)
128 3v9f_A Two-component system se 95.8 1.2 4.3E-05 49.0 23.5 216 334-604 429-648 (781)
129 1ri6_A Putative isomerase YBHE 95.8 1.5 5.1E-05 42.1 23.2 212 315-574 49-271 (343)
130 3jro_A Fusion protein of prote 95.8 0.46 1.6E-05 52.3 19.8 232 316-604 21-276 (753)
131 1ri6_A Putative isomerase YBHE 95.7 0.44 1.5E-05 46.0 17.8 204 316-572 5-216 (343)
132 1kv9_A Type II quinohemoprotei 95.7 2.4 8.2E-05 45.7 24.8 127 366-510 64-195 (668)
133 1yiq_A Quinohemoprotein alcoho 95.7 2.2 7.5E-05 46.2 24.6 127 366-510 68-200 (689)
134 3u4y_A Uncharacterized protein 95.5 1.9 6.4E-05 41.3 23.0 147 315-502 9-160 (331)
135 3f1p_A Endothelial PAS domain- 95.5 0.0054 1.9E-07 49.2 2.2 43 197-239 16-59 (117)
136 1w6s_A Methanol dehydrogenase 95.4 2.1 7.3E-05 45.3 22.3 133 309-455 56-200 (599)
137 2ojh_A Uncharacterized protein 95.4 1.7 5.8E-05 40.4 20.0 232 331-620 21-259 (297)
138 4a2l_A BT_4663, two-component 95.3 3.4 0.00012 45.6 25.0 214 334-604 429-651 (795)
139 1gxr_A ESG1, transducin-like e 95.3 1.5 5.1E-05 41.9 19.9 220 316-604 109-328 (337)
140 2r78_A Sensor protein; sensory 95.2 0.0053 1.8E-07 49.5 1.2 50 180-229 8-61 (117)
141 1w6s_A Methanol dehydrogenase 95.2 3.1 0.00011 44.0 22.8 129 366-511 60-200 (599)
142 1yiq_A Quinohemoprotein alcoho 95.2 4.4 0.00015 43.8 25.6 128 309-454 64-200 (689)
143 1kv9_A Type II quinohemoprotei 95.1 2.9 0.0001 45.0 22.9 130 308-455 59-196 (668)
144 1k8k_C P40, ARP2/3 complex 41 95.0 2.4 8.3E-05 41.2 20.6 110 315-445 63-172 (372)
145 3jrp_A Fusion protein of prote 94.9 2 6.9E-05 41.8 19.8 206 316-574 69-295 (379)
146 1k8k_C P40, ARP2/3 complex 41 94.9 3.1 0.00011 40.4 21.0 154 315-501 19-172 (372)
147 3mfx_A Sensory BOX/ggdef famil 94.8 0.0048 1.6E-07 51.0 -0.1 49 187-235 14-63 (129)
148 2iwa_A Glutamine cyclotransfer 94.8 2.5 8.5E-05 39.3 18.4 157 413-620 24-182 (266)
149 2ykf_A Pdtas, probable sensor 93.7 0.0058 2E-07 59.0 0.0 87 143-230 111-223 (305)
150 3zwl_B Eukaryotic translation 94.6 3.6 0.00012 39.8 20.7 143 420-604 186-337 (369)
151 2dg1_A DRP35, lactonase; beta 94.6 3.4 0.00012 39.6 22.9 258 315-620 55-317 (333)
152 3zwl_B Eukaryotic translation 94.5 3.7 0.00013 39.7 21.5 231 315-604 43-281 (369)
153 2z2n_A Virginiamycin B lyase; 94.5 3.2 0.00011 38.8 27.0 230 315-620 67-296 (299)
154 1flg_A Protein (quinoprotein e 94.4 5.9 0.0002 41.8 22.7 131 309-454 62-201 (582)
155 2xbg_A YCF48-like protein; pho 94.4 3.8 0.00013 39.5 24.7 243 289-601 23-268 (327)
156 2e31_A FBS1, F-box only protei 94.4 0.024 8.3E-07 53.5 3.6 49 211-260 50-99 (297)
157 2z3z_A Dipeptidyl aminopeptida 94.4 6.9 0.00024 42.2 25.0 196 383-619 234-435 (706)
158 3l2o_B F-box only protein 4; s 94.3 0.022 7.5E-07 53.2 3.0 48 212-260 5-52 (312)
159 1jmx_B Amine dehydrogenase; ox 94.0 4.5 0.00015 38.8 19.7 65 314-394 9-75 (349)
160 3p7n_A Sensor histidine kinase 94.0 0.013 4.6E-07 54.9 1.0 53 184-236 64-123 (258)
161 1nir_A Nitrite reductase; hemo 93.9 7.3 0.00025 40.7 23.2 235 315-619 148-402 (543)
162 2vv6_A FIXL, sensor protein FI 93.8 0.02 6.7E-07 46.0 1.5 40 195-234 8-48 (119)
163 2kdk_A ARYL hydrocarbon recept 93.8 0.014 4.8E-07 47.0 0.6 41 196-236 19-60 (121)
164 2hqs_A Protein TOLB; TOLB, PAL 93.8 4.8 0.00016 40.3 19.7 201 368-619 143-344 (415)
165 4aez_A CDC20, WD repeat-contai 93.7 5.9 0.0002 39.2 23.1 224 315-604 145-371 (401)
166 1got_B GT-beta; complex (GTP-b 93.6 5.4 0.00019 38.4 20.6 226 315-605 108-335 (340)
167 1ll8_A PAS kinase; PAS domain, 93.6 0.015 5.1E-07 46.3 0.4 39 194-232 12-52 (114)
168 4gqb_B Methylosome protein 50; 93.6 3.2 0.00011 40.3 17.6 182 367-605 137-323 (344)
169 3fm0_A Protein CIAO1; WDR39,SG 93.3 2.5 8.5E-05 41.1 16.3 189 367-604 26-216 (345)
170 2gj3_A Nitrogen fixation regul 93.2 0.028 9.5E-07 45.2 1.5 40 193-232 18-58 (120)
171 3mxq_A Sensor protein; PSI2, M 93.2 0.023 8E-07 48.3 1.0 44 187-230 29-73 (152)
172 4e54_B DNA damage-binding prot 93.1 4.3 0.00015 40.9 18.2 108 316-446 132-240 (435)
173 1rwi_B Serine/threonine-protei 93.1 5.3 0.00018 36.7 24.0 231 315-620 34-265 (270)
174 3scy_A Hypothetical bacterial 92.9 7.1 0.00024 37.8 24.6 70 315-394 61-130 (361)
175 3ju4_A Endo-N-acetylneuraminid 92.8 7.4 0.00025 37.7 21.6 214 386-621 260-516 (670)
176 3fc7_A HTR-like protein, senso 92.7 0.036 1.2E-06 44.6 1.5 39 193-231 32-71 (125)
177 3ow8_A WD repeat-containing pr 92.7 7.2 0.00025 37.3 22.1 179 368-604 91-270 (321)
178 3fg8_A Uncharacterized protein 92.7 0.023 7.7E-07 45.7 0.2 45 190-234 22-67 (118)
179 2ecf_A Dipeptidyl peptidase IV 92.7 2.4 8.1E-05 46.3 16.6 73 538-617 295-367 (741)
180 3olo_A Two-component sensor hi 92.6 0.019 6.7E-07 45.6 -0.3 39 193-231 26-65 (118)
181 4g56_B MGC81050 protein; prote 92.5 8.2 0.00028 37.5 19.1 189 367-619 149-343 (357)
182 1got_B GT-beta; complex (GTP-b 92.5 7.9 0.00027 37.2 20.5 223 315-604 66-292 (340)
183 1r5m_A SIR4-interacting protei 92.4 9.1 0.00031 37.7 21.8 222 315-604 119-352 (425)
184 3jro_A Fusion protein of prote 92.3 3.5 0.00012 45.2 17.3 205 316-573 67-292 (753)
185 2ojh_A Uncharacterized protein 92.2 7 0.00024 36.0 18.0 99 382-502 20-119 (297)
186 2ecf_A Dipeptidyl peptidase IV 92.0 16 0.00054 39.6 22.4 17 385-403 173-189 (741)
187 4a11_B DNA excision repair pro 91.9 5.5 0.00019 39.1 17.0 152 315-502 111-276 (408)
188 1nir_A Nitrite reductase; hemo 91.8 11 0.00038 39.2 19.7 248 315-621 190-460 (543)
189 2xdw_A Prolyl endopeptidase; a 91.6 17 0.00058 39.2 23.0 194 333-563 152-366 (710)
190 4e54_B DNA damage-binding prot 91.6 12 0.00039 37.6 19.3 66 315-394 176-241 (435)
191 3dwl_C Actin-related protein 2 91.5 3 0.0001 40.7 14.5 153 315-501 22-176 (377)
192 3mkq_A Coatomer beta'-subunit; 91.2 18 0.00063 39.5 22.0 180 368-604 66-250 (814)
193 3d72_A Vivid PAS protein VVD; 91.2 0.048 1.7E-06 45.6 0.6 34 198-231 46-80 (149)
194 2aq5_A Coronin-1A; WD40 repeat 91.1 13 0.00043 36.7 20.7 155 368-564 93-253 (402)
195 2qc5_A Streptogramin B lactona 91.0 9.9 0.00034 35.3 22.4 218 315-600 30-247 (300)
196 1q7f_A NHL, brain tumor CG1071 90.8 10 0.00035 35.2 29.7 238 315-619 40-280 (286)
197 4ery_A WD repeat-containing pr 90.8 11 0.00037 35.5 26.3 225 315-604 34-259 (312)
198 4g56_B MGC81050 protein; prote 90.6 3.7 0.00013 40.0 14.0 20 539-564 238-257 (357)
199 2xdw_A Prolyl endopeptidase; a 90.6 21 0.00072 38.5 25.0 196 384-617 151-366 (710)
200 3mjq_A Uncharacterized protein 90.5 0.084 2.9E-06 42.2 1.5 44 193-236 12-56 (126)
201 3c5m_A Oligogalacturonate lyas 90.5 8 0.00027 37.8 16.6 200 384-621 168-386 (396)
202 3icy_A Sensor protein; sensory 90.5 0.096 3.3E-06 41.3 1.7 45 195-239 19-66 (118)
203 3eeh_A Putative light and redo 90.4 0.13 4.5E-06 40.6 2.6 44 195-238 26-73 (125)
204 2pm9_A Protein WEB1, protein t 90.4 14 0.00049 36.2 20.0 63 539-619 274-337 (416)
205 3nja_A Probable ggdef family p 90.4 0.062 2.1E-06 42.9 0.5 43 195-237 22-67 (125)
206 3v7d_B Cell division control p 90.4 16 0.00055 36.7 23.7 100 422-564 281-380 (464)
207 3k26_A Polycomb protein EED; W 90.3 10 0.00035 36.4 17.0 106 316-446 85-192 (366)
208 4aow_A Guanine nucleotide-bind 90.3 12 0.00042 35.4 18.9 60 422-501 186-245 (340)
209 2z3z_A Dipeptidyl aminopeptida 90.2 22 0.00076 38.1 22.7 115 436-573 234-350 (706)
210 2vdu_B TRNA (guanine-N(7)-)-me 90.1 17 0.00057 36.5 24.2 151 315-502 114-271 (450)
211 1mzu_A PPR; photoactive yellow 90.1 0.046 1.6E-06 44.3 -0.5 46 185-230 27-73 (129)
212 2pm9_A Protein WEB1, protein t 90.1 9.9 0.00034 37.4 17.0 112 369-502 178-294 (416)
213 2aq5_A Coronin-1A; WD40 repeat 90.0 14 0.00047 36.4 17.8 108 370-502 145-254 (402)
214 3mkq_A Coatomer beta'-subunit; 89.9 26 0.00088 38.3 21.9 189 315-563 66-257 (814)
215 1sq9_A Antiviral protein SKI8; 89.8 16 0.00053 35.7 22.5 65 370-446 82-157 (397)
216 4hia_A LOV protein; PAS, HTH, 89.7 0.11 3.6E-06 45.0 1.5 44 192-235 19-66 (176)
217 2ynn_A Coatomer subunit beta'; 89.7 14 0.00046 34.8 17.3 186 315-563 66-257 (304)
218 1qks_A Cytochrome CD1 nitrite 89.6 22 0.00076 37.1 21.7 191 315-564 166-372 (567)
219 1flg_A Protein (quinoprotein e 89.4 23 0.00079 37.2 23.8 127 366-509 66-200 (582)
220 3i2n_A WD repeat-containing pr 89.4 3.3 0.00011 39.8 12.5 155 316-502 31-199 (357)
221 3pe7_A Oligogalacturonate lyas 89.4 17 0.00057 35.4 20.5 208 384-621 168-386 (388)
222 2pr5_A Blue-light photorecepto 89.3 0.11 3.6E-06 42.5 1.1 31 201-231 23-54 (132)
223 3v9f_A Two-component system se 89.3 28 0.00097 38.0 27.6 213 334-600 385-600 (781)
224 3azo_A Aminopeptidase; POP fam 89.3 20 0.00069 38.1 19.6 198 383-619 160-369 (662)
225 4aez_A CDC20, WD repeat-contai 89.2 18 0.00061 35.6 22.7 134 334-502 115-248 (401)
226 4a2l_A BT_4663, two-component 89.2 29 0.00099 38.0 21.8 154 315-512 462-622 (795)
227 2qc5_A Streptogramin B lactona 89.2 14 0.00047 34.3 23.1 218 315-600 72-289 (300)
228 2z2n_A Virginiamycin B lyase; 89.0 14 0.00048 34.2 23.4 218 315-600 25-242 (299)
229 1nwz_A PYP, photoactive yellow 88.9 0.06 2E-06 43.6 -0.7 44 187-230 24-68 (125)
230 3dwl_C Actin-related protein 2 88.9 4.1 0.00014 39.8 12.8 154 368-563 22-175 (377)
231 3ue6_A Aureochrome1; PAS/LOV d 88.7 0.071 2.4E-06 45.4 -0.4 43 192-234 47-93 (166)
232 2hz6_A Endoplasmic reticulum t 88.5 0.81 2.8E-05 45.3 7.2 118 361-510 2-119 (369)
233 3ow8_A WD repeat-containing pr 88.5 17 0.00059 34.5 22.6 220 316-604 92-312 (321)
234 3luq_A Sensor protein; PAS, hi 88.5 0.077 2.6E-06 41.5 -0.3 41 191-232 14-55 (114)
235 2qkp_A Uncharacterized protein 88.4 0.24 8.2E-06 41.8 2.8 47 185-231 24-73 (151)
236 1jmx_B Amine dehydrogenase; ox 88.4 16 0.00056 34.6 16.7 66 367-448 9-76 (349)
237 2bkl_A Prolyl endopeptidase; m 88.4 30 0.001 37.1 20.6 259 314-617 78-349 (695)
238 4d9s_A UVB-resistance protein 88.4 21 0.00073 35.4 21.6 207 359-601 130-355 (406)
239 3vl1_A 26S proteasome regulato 88.3 21 0.0007 35.2 24.7 105 368-502 108-212 (420)
240 3k26_A Polycomb protein EED; W 88.1 19 0.00064 34.4 17.0 107 369-502 85-192 (366)
241 4eet_B Phototropin-2; LOV, blu 88.1 0.15 5.2E-06 39.7 1.3 42 193-234 10-55 (115)
242 3iuj_A Prolyl endopeptidase; h 88.0 32 0.0011 37.0 21.5 200 332-573 155-365 (693)
243 1n9l_A PHOT-LOV1, putative blu 87.7 0.14 4.9E-06 40.1 0.9 33 199-231 15-48 (109)
244 3fm0_A Protein CIAO1; WDR39,SG 87.5 21 0.00071 34.3 20.4 162 315-513 27-190 (345)
245 1v9y_A Heme PAS sensor protein 87.4 0.15 5.1E-06 43.2 0.9 43 193-235 53-96 (167)
246 3iz6_a 40S ribosomal protein R 87.4 23 0.00077 34.6 27.3 191 371-605 172-367 (380)
247 1sq9_A Antiviral protein SKI8; 87.2 23 0.00078 34.5 19.6 20 539-564 302-321 (397)
248 3sfz_A APAF-1, apoptotic pepti 86.8 36 0.0012 39.5 21.1 145 315-502 626-774 (1249)
249 1r5m_A SIR4-interacting protei 86.8 25 0.00084 34.4 22.3 145 366-563 215-359 (425)
250 3t50_A Blue-light-activated hi 86.8 0.2 6.9E-06 40.2 1.3 41 194-234 11-55 (128)
251 2dg1_A DRP35, lactonase; beta 86.6 15 0.00052 34.8 15.2 124 419-573 54-177 (333)
252 3b33_A Sensor protein; structu 86.6 0.088 3E-06 41.6 -1.1 47 185-231 12-59 (115)
253 1q7f_A NHL, brain tumor CG1071 86.5 20 0.00068 33.1 26.2 190 315-563 88-278 (286)
254 1p22_A F-BOX/WD-repeat protein 86.5 27 0.00094 34.7 21.4 183 313-563 180-363 (435)
255 2ynn_A Coatomer subunit beta'; 86.5 21 0.00073 33.4 16.4 146 315-502 24-172 (304)
256 3mqq_A Transcriptional regulat 86.3 0.11 3.9E-06 41.4 -0.5 35 196-230 18-53 (120)
257 3mr0_A Sensory box histidine k 86.3 0.17 5.9E-06 41.9 0.6 44 196-239 25-71 (142)
258 4ery_A WD repeat-containing pr 86.2 22 0.00075 33.3 25.6 225 315-606 76-303 (312)
259 2hz6_A Endoplasmic reticulum t 85.9 0.52 1.8E-05 46.7 4.0 151 313-510 7-157 (369)
260 2bkl_A Prolyl endopeptidase; m 85.8 31 0.0011 37.0 18.6 194 332-563 147-349 (695)
261 2pm7_B Protein transport prote 85.2 24 0.00083 32.8 20.0 102 475-604 171-276 (297)
262 3c5m_A Oligogalacturonate lyas 85.2 22 0.00075 34.5 15.8 159 333-512 169-337 (396)
263 2w0n_A Sensor protein DCUS; si 85.1 0.24 8.1E-06 38.8 0.9 46 187-232 22-71 (118)
264 2jhe_A Transcription regulator 85.0 0.35 1.2E-05 42.5 2.0 44 188-231 88-132 (190)
265 1rwi_B Serine/threonine-protei 84.9 22 0.00077 32.2 21.1 150 363-564 29-179 (270)
266 3g4e_A Regucalcin; six bladed 84.8 25 0.00087 32.8 20.1 225 315-603 24-263 (297)
267 3vl1_A 26S proteasome regulato 84.4 32 0.0011 33.7 25.5 107 315-448 108-214 (420)
268 3k3c_A Protein RV1364C/MT1410; 84.3 0.19 6.3E-06 42.4 -0.1 43 193-236 30-73 (158)
269 3sfz_A APAF-1, apoptotic pepti 84.0 29 0.00098 40.3 18.4 185 315-564 972-1157(1249)
270 2vdu_B TRNA (guanine-N(7)-)-me 83.8 37 0.0013 33.9 19.2 64 369-448 210-273 (450)
271 3ott_A Two-component system se 83.2 56 0.0019 35.4 21.3 214 334-604 394-618 (758)
272 4aow_A Guanine nucleotide-bind 83.0 31 0.0011 32.4 18.6 21 537-563 224-244 (340)
273 2pbi_B Guanine nucleotide-bind 82.9 35 0.0012 32.8 21.6 175 370-604 167-348 (354)
274 3lyx_A Sensory BOX/ggdef domai 82.8 0.66 2.3E-05 36.1 2.7 43 191-233 18-61 (124)
275 4a11_B DNA excision repair pro 82.8 36 0.0012 33.0 18.9 61 317-394 157-219 (408)
276 3e5z_A Putative gluconolactona 82.6 31 0.0011 32.0 22.8 234 315-621 39-288 (296)
277 3i2n_A WD repeat-containing pr 82.1 35 0.0012 32.3 15.7 68 316-394 129-200 (357)
278 3h9w_A Diguanylate cyclase wit 81.8 0.39 1.3E-05 37.7 0.9 39 201-239 15-55 (115)
279 3dm0_A Maltose-binding peripla 81.6 60 0.002 34.7 21.3 147 367-564 440-591 (694)
280 3a0s_A Sensor protein; PAS-fol 81.4 0.48 1.6E-05 34.9 1.2 33 195-227 7-40 (96)
281 3pe7_A Oligogalacturonate lyas 81.4 40 0.0014 32.5 20.1 54 384-448 60-113 (388)
282 4gqb_B Methylosome protein 50; 80.5 40 0.0014 32.3 15.2 148 315-502 138-289 (344)
283 1qks_A Cytochrome CD1 nitrite 80.4 59 0.002 33.9 19.7 204 384-620 320-539 (567)
284 1yfq_A Cell cycle arrest prote 80.2 40 0.0014 31.7 16.2 103 370-501 24-130 (342)
285 2ool_A Sensor protein; bacteri 80.1 5.1 0.00018 38.6 8.2 43 53-97 40-83 (337)
286 2wkq_A NPH1-1, RAS-related C3 80.1 0.63 2.1E-05 45.1 1.9 44 191-234 22-69 (332)
287 3mmy_A MRNA export factor; mRN 80.0 41 0.0014 31.9 20.0 110 315-455 97-208 (368)
288 4hi4_A Aerotaxis transducer AE 80.0 0.32 1.1E-05 38.9 -0.3 43 187-229 12-67 (121)
289 1yr2_A Prolyl oligopeptidase; 80.0 47 0.0016 35.9 17.2 150 383-563 242-393 (741)
290 1pjx_A Dfpase, DIISOPROPYLFLUO 79.9 39 0.0013 31.4 24.2 233 333-621 47-301 (314)
291 2hes_X YDR267CP; beta-propelle 79.8 38 0.0013 32.1 14.7 63 534-604 255-319 (330)
292 1vyh_C Platelet-activating fac 79.8 49 0.0017 32.5 21.6 146 316-502 120-265 (410)
293 3azo_A Aminopeptidase; POP fam 79.8 46 0.0016 35.2 16.8 202 332-574 161-376 (662)
294 1itv_A MMP9; adaptive molecula 79.5 31 0.0011 30.1 14.2 153 311-502 12-174 (195)
295 3hxj_A Pyrrolo-quinoline quino 78.9 43 0.0015 31.4 19.3 211 313-604 105-315 (330)
296 3kci_A Probable E3 ubiquitin-p 78.9 47 0.0016 32.6 15.3 64 531-601 223-291 (389)
297 3bg1_A Protein SEC13 homolog; 78.7 34 0.0011 32.2 13.9 20 370-394 72-91 (316)
298 1qhu_A Protein (hemopexin); be 78.2 60 0.0021 32.7 19.5 102 366-501 105-214 (460)
299 1gen_A Gelatinase A; hydrolase 77.9 37 0.0013 30.2 16.1 157 310-501 35-201 (218)
300 3kx0_X Uncharacterized protein 77.8 0.31 1.1E-05 42.6 -1.0 42 192-234 49-91 (185)
301 2z6d_A Phototropin-2; PAS-fold 77.7 0.71 2.4E-05 36.2 1.2 44 190-233 16-63 (130)
302 2mad_H Methylamine dehydrogena 77.4 56 0.0019 31.8 26.2 118 315-448 32-158 (373)
303 3a0r_A Sensor protein; four he 77.0 0.59 2E-05 45.6 0.6 40 192-231 20-60 (349)
304 3iuj_A Prolyl endopeptidase; h 76.5 85 0.0029 33.5 21.7 162 384-575 155-325 (693)
305 3sw1_A Sensory box protein; li 76.3 0.57 1.9E-05 39.3 0.2 45 189-233 34-82 (162)
306 3ei3_B DNA damage-binding prot 75.8 58 0.002 31.3 24.8 192 317-564 87-281 (383)
307 1pby_B Quinohemoprotein amine 75.5 53 0.0018 30.7 16.5 49 332-394 115-164 (337)
308 1vyh_C Platelet-activating fac 75.3 65 0.0022 31.6 21.4 55 538-604 348-402 (410)
309 4gga_A P55CDC, cell division c 75.0 67 0.0023 31.6 22.4 135 334-502 127-261 (420)
310 3ba0_A Macrophage metalloelast 74.9 64 0.0022 31.3 14.8 155 311-501 186-349 (365)
311 1pex_A Collagenase-3, MMP-13; 74.7 44 0.0015 29.4 14.9 152 311-501 29-191 (207)
312 1pgu_A Actin interacting prote 74.7 83 0.0028 32.5 19.0 105 423-564 175-282 (615)
313 1jof_A Carboxy-CIS,CIS-muconat 74.6 63 0.0021 31.1 18.3 55 333-394 15-71 (365)
314 2v0u_A NPH1-1, LOV2; kinase, t 74.3 1.1 3.6E-05 36.2 1.4 42 192-233 14-59 (146)
315 3mmy_A MRNA export factor; mRN 74.1 60 0.0021 30.6 19.2 106 316-448 54-162 (368)
316 3of7_A Regulator of chromosome 74.1 51 0.0017 33.4 14.4 18 584-601 386-403 (473)
317 4d9s_A UVB-resistance protein 73.9 72 0.0025 31.4 19.8 65 530-601 182-251 (406)
318 3o4h_A Acylamino-acid-releasin 73.7 85 0.0029 32.5 16.5 154 370-571 76-231 (582)
319 3f3f_A Nucleoporin SEH1; struc 73.6 58 0.002 30.3 22.7 67 315-394 22-91 (351)
320 3odt_A Protein DOA1; ubiquitin 72.9 58 0.002 29.9 23.9 62 539-620 236-297 (313)
321 2pm7_B Protein transport prote 72.7 60 0.0021 30.0 16.8 74 475-574 220-293 (297)
322 1xfd_A DIP, dipeptidyl aminope 72.4 1.1E+02 0.0036 32.7 20.9 61 331-402 90-150 (723)
323 3kci_A Probable E3 ubiquitin-p 71.8 78 0.0027 30.9 18.3 65 530-601 274-343 (389)
324 2ece_A 462AA long hypothetical 71.6 87 0.003 31.4 16.2 77 366-448 93-175 (462)
325 3vol_A Aerotaxis transducer AE 71.6 0.81 2.8E-05 41.8 -0.0 40 190-229 32-84 (233)
326 3lrv_A PRE-mRNA-splicing facto 71.1 71 0.0024 30.2 19.1 107 368-502 138-244 (343)
327 2p9w_A MAL S 1 allergenic prot 70.2 77 0.0026 30.2 13.5 184 383-603 99-305 (334)
328 2xyi_A Probable histone-bindin 68.6 80 0.0027 31.1 14.4 18 541-564 291-308 (430)
329 4ew7_A Conjugative transfer: r 68.5 35 0.0012 25.7 9.0 37 51-90 27-63 (127)
330 1qhu_A Protein (hemopexin); be 68.3 1E+02 0.0035 31.0 19.5 58 368-446 158-215 (460)
331 4gga_A P55CDC, cell division c 67.0 99 0.0034 30.3 24.8 62 315-394 158-219 (420)
332 3c7x_A Matrix metalloproteinas 66.9 64 0.0022 28.0 14.6 153 311-501 11-174 (196)
333 3ott_A Two-component system se 66.7 1.2E+02 0.0042 32.7 16.4 111 315-454 482-592 (758)
334 1yr2_A Prolyl oligopeptidase; 66.5 1.4E+02 0.0049 32.0 22.7 159 384-574 189-359 (741)
335 1pby_B Quinohemoprotein amine 66.3 84 0.0029 29.2 22.6 75 367-448 44-126 (337)
336 2l0w_A Potassium voltage-gated 66.3 1.9 6.5E-05 34.2 1.2 37 193-229 32-73 (138)
337 1yfq_A Cell cycle arrest prote 65.6 88 0.003 29.2 21.9 56 537-605 260-315 (342)
338 3lrv_A PRE-mRNA-splicing facto 65.4 93 0.0032 29.4 19.8 161 315-509 138-299 (343)
339 1k32_A Tricorn protease; prote 63.7 2E+02 0.0067 32.5 18.1 146 384-573 317-467 (1045)
340 3fvz_A Peptidyl-glycine alpha- 62.9 1E+02 0.0035 29.0 25.5 157 384-573 69-233 (329)
341 3g4e_A Regucalcin; six bladed 62.8 96 0.0033 28.6 15.0 109 420-563 24-137 (297)
342 3ba0_A Macrophage metalloelast 62.8 1.1E+02 0.0039 29.5 14.8 152 368-563 190-348 (365)
343 1byw_A Protein (human ERG pota 62.3 2.1 7.1E-05 32.1 0.7 31 200-230 14-46 (110)
344 2ghs_A AGR_C_1268P; regucalcin 62.1 1.1E+02 0.0036 28.9 23.5 147 315-501 60-209 (326)
345 3ju4_A Endo-N-acetylneuraminid 62.0 1.2E+02 0.0041 29.5 24.4 216 334-564 260-513 (670)
346 3ei3_B DNA damage-binding prot 61.1 1.2E+02 0.004 29.1 26.6 148 316-502 131-282 (383)
347 4eho_A Bacteriophytochrome, PA 61.0 1.1 3.9E-05 47.8 -1.4 44 195-238 533-577 (635)
348 1xfd_A DIP, dipeptidyl aminope 60.9 1.7E+02 0.0059 31.0 20.0 104 333-448 38-145 (723)
349 3fvz_A Peptidyl-glycine alpha- 60.6 1.1E+02 0.0038 28.7 29.7 240 332-619 69-322 (329)
350 3dm0_A Maltose-binding peripla 59.9 1.8E+02 0.0061 30.8 21.5 148 315-502 441-592 (694)
351 1oj5_A Steroid receptor coacti 59.7 2.8 9.6E-05 33.8 1.0 47 197-243 14-64 (132)
352 2hes_X YDR267CP; beta-propelle 59.4 1.2E+02 0.004 28.5 17.8 74 472-574 117-191 (330)
353 3cax_A Uncharacterized protein 58.1 5.4 0.00018 39.2 3.0 46 185-232 244-290 (369)
354 3bg1_A Protein SEC13 homolog; 57.3 1.2E+02 0.0042 28.1 13.3 112 369-509 25-142 (316)
355 2pbi_B Guanine nucleotide-bind 57.2 1.3E+02 0.0046 28.5 16.3 104 369-501 210-314 (354)
356 1pex_A Collagenase-3, MMP-13; 56.3 1E+02 0.0036 27.0 17.3 152 367-563 32-190 (207)
357 4e04_A Bacteriophytochrome (li 55.8 38 0.0013 32.3 8.2 41 53-96 27-68 (327)
358 3oyo_A Hemopexin fold protein 54.6 94 0.0032 27.7 10.4 108 367-501 69-197 (225)
359 3hrp_A Uncharacterized protein 54.0 1.7E+02 0.0058 28.7 22.8 153 367-563 140-296 (409)
360 3c75_H MADH, methylamine dehyd 53.0 1.8E+02 0.0062 28.8 16.8 250 315-621 84-361 (426)
361 2xyi_A Probable histone-bindin 52.9 1.7E+02 0.006 28.6 19.4 107 371-502 196-309 (430)
362 3oyo_A Hemopexin fold protein 51.0 1E+02 0.0035 27.5 10.0 113 419-563 69-196 (225)
363 1itv_A MMP9; adaptive molecula 50.6 1.2E+02 0.0042 26.2 14.7 149 368-563 16-172 (195)
364 1pjx_A Dfpase, DIISOPROPYLFLUO 49.3 1.6E+02 0.0054 27.0 12.7 112 467-601 22-135 (314)
365 2p4o_A Hypothetical protein; p 48.9 1.7E+02 0.0057 27.1 23.8 223 315-601 42-277 (306)
366 3hxj_A Pyrrolo-quinoline quino 48.0 1.7E+02 0.0058 27.0 15.3 145 368-573 107-251 (330)
367 3e5z_A Putative gluconolactona 47.8 1.6E+02 0.0055 26.8 11.6 100 466-599 31-131 (296)
368 2ast_B S-phase kinase-associat 47.1 6.5 0.00022 37.8 1.5 45 211-256 8-52 (336)
369 1su3_A Interstitial collagenas 47.0 2.3E+02 0.008 28.3 15.7 150 311-501 268-431 (450)
370 3f3f_A Nucleoporin SEH1; struc 45.2 1.8E+02 0.0063 26.6 18.1 67 368-447 22-91 (351)
371 3gre_A Serine/threonine-protei 44.4 2.2E+02 0.0076 27.6 12.8 66 315-394 181-246 (437)
372 1gen_A Gelatinase A; hydrolase 44.0 1.7E+02 0.0058 25.8 16.7 153 367-563 39-200 (218)
373 3frx_A Guanine nucleotide-bind 43.6 2E+02 0.0069 26.6 22.8 145 315-502 76-227 (319)
374 3mvd_K Regulator of chromosome 43.1 2.5E+02 0.0085 27.5 13.6 63 530-600 136-204 (423)
375 3hx6_A Type 4 fimbrial biogene 42.3 3.1E+02 0.01 28.3 16.3 159 422-600 152-348 (570)
376 3hrp_A Uncharacterized protein 41.9 2.6E+02 0.0088 27.3 26.4 250 315-617 141-408 (409)
377 1a12_A RCC1, regulator of chro 41.5 2.6E+02 0.0089 27.3 20.8 64 530-601 295-363 (413)
378 3mvd_K Regulator of chromosome 40.6 2.7E+02 0.0093 27.2 17.5 65 530-601 303-372 (423)
379 3odt_A Protein DOA1; ubiquitin 40.1 2.1E+02 0.0073 25.8 17.4 146 369-571 155-300 (313)
380 4ggc_A P55CDC, cell division c 37.7 2.3E+02 0.008 25.6 20.6 53 334-394 47-99 (318)
381 3c7x_A Matrix metalloproteinas 37.4 2E+02 0.0069 24.8 14.6 150 368-563 15-173 (196)
382 1ck7_A Protein (gelatinase A); 34.0 2.2E+02 0.0076 29.8 10.6 108 367-501 499-614 (631)
383 2ece_A 462AA long hypothetical 33.7 3.7E+02 0.013 26.8 16.4 75 473-563 95-171 (462)
384 1a12_A RCC1, regulator of chro 33.6 3.4E+02 0.012 26.4 11.9 66 411-482 241-313 (413)
385 1k32_A Tricorn protease; prote 33.1 5.6E+02 0.019 28.7 23.3 72 536-619 386-461 (1045)
386 1erj_A Transcriptional repress 33.0 3.3E+02 0.011 26.0 22.1 106 315-448 134-240 (393)
387 1erj_A Transcriptional repress 33.0 3.3E+02 0.011 26.0 19.3 102 419-563 133-236 (393)
388 3dr2_A Exported gluconolactona 32.0 3E+02 0.01 25.2 13.2 158 419-619 55-224 (305)
389 1hxn_A Hemopexin, HPX; heme, b 31.6 2.7E+02 0.0092 24.5 13.6 106 367-501 27-143 (219)
390 4fj6_A Glycoside hydrolase fam 30.9 4.4E+02 0.015 26.8 12.5 142 439-599 354-502 (523)
391 4h5i_A Guanine nucleotide-exch 30.7 3.5E+02 0.012 25.6 20.3 198 367-620 144-344 (365)
392 2ghs_A AGR_C_1268P; regucalcin 30.0 3.4E+02 0.012 25.2 12.7 65 474-574 61-125 (326)
393 2fp8_A Strictosidine synthase; 29.7 3.4E+02 0.012 25.1 18.1 214 362-623 84-317 (322)
394 3o4h_A Acylamino-acid-releasin 29.6 4.7E+02 0.016 26.6 18.2 70 538-620 159-228 (582)
395 1pgu_A Actin interacting prote 28.5 4.8E+02 0.016 26.4 24.3 59 537-604 215-274 (615)
396 1npe_A Nidogen, entactin; glyc 28.3 3.2E+02 0.011 24.3 25.4 193 315-571 47-242 (267)
397 2fp8_A Strictosidine synthase; 27.9 3.6E+02 0.012 24.8 17.7 209 310-564 84-312 (322)
398 1su3_A Interstitial collagenas 27.3 4.7E+02 0.016 26.0 15.9 151 367-563 271-430 (450)
399 1jof_A Carboxy-CIS,CIS-muconat 27.1 4E+02 0.014 25.1 15.8 35 532-573 148-183 (365)
400 1z68_A Fibroblast activation p 26.7 5.8E+02 0.02 26.8 16.0 234 333-619 91-393 (719)
401 1hxn_A Hemopexin, HPX; heme, b 26.1 3.4E+02 0.012 23.9 12.9 107 314-446 27-144 (219)
402 1fwx_A Nitrous oxide reductase 24.9 6E+02 0.02 26.4 12.1 158 315-501 101-307 (595)
403 3sjl_D Methylamine dehydrogena 24.4 2.4E+02 0.0082 27.5 8.5 75 472-570 290-366 (386)
404 3tc9_A Hypothetical hydrolase; 24.4 5.1E+02 0.017 25.4 16.1 108 368-502 149-257 (430)
405 3dr2_A Exported gluconolactona 24.2 4.1E+02 0.014 24.2 10.8 56 332-394 169-225 (305)
406 4h5i_A Guanine nucleotide-exch 23.8 4.7E+02 0.016 24.7 23.1 65 537-605 228-292 (365)
407 2gop_A Trilobed protease; beta 23.6 4.3E+02 0.015 24.3 17.2 213 333-604 44-283 (347)
408 3gre_A Serine/threonine-protei 22.9 5.1E+02 0.017 24.9 13.3 64 420-501 181-244 (437)
409 2be1_A Serine/threonine-protei 22.6 94 0.0032 29.8 5.1 116 371-509 12-137 (339)
410 1p0z_A Sensor kinase CITA; tra 22.2 2.8E+02 0.0097 21.6 10.1 27 143-169 101-127 (131)
411 2cn3_A Xyloglucanase, beta-1,4 21.4 7.1E+02 0.024 26.5 12.5 104 343-454 231-343 (737)
412 2p9w_A MAL S 1 allergenic prot 21.2 5.3E+02 0.018 24.4 16.7 101 332-446 100-215 (334)
413 3b7f_A Glycosyl hydrolase, BNR 21.1 5.5E+02 0.019 24.5 19.2 64 334-403 33-98 (394)
414 1w8o_A Bacterial sialidase; 3D 20.1 7.2E+02 0.025 25.5 13.8 210 315-545 94-338 (601)
415 3of7_A Regulator of chromosome 20.0 6.5E+02 0.022 25.0 15.8 65 530-601 266-339 (473)
No 1
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=1.2e-40 Score=331.26 Aligned_cols=279 Identities=16% Similarity=0.188 Sum_probs=231.6
Q ss_pred CCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccC--
Q 048754 300 GAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGC-- 377 (625)
Q Consensus 300 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~-- 377 (625)
+..|++|..|+++.++++||++||. ....++++++||+.+ ++|..+ +.+|.+|.+|+++++ +++|||+||.
T Consensus 9 ~~~~~~~~~~~~~~~~~~i~v~GG~--~~~~~~~~~~~d~~~--~~W~~~--~~~p~~r~~~~~~~~-~~~lyv~GG~~~ 81 (308)
T 1zgk_A 9 HSSGLVPRGSHAPKVGRLIYTAGGY--FRQSLSYLEAYNPSN--GTWLRL--ADLQVPRSGLAGCVV-GGLLYAVGGRNN 81 (308)
T ss_dssp ------------CCCCCCEEEECCB--SSSBCCCEEEEETTT--TEEEEC--CCCSSCCBSCEEEEE-TTEEEEECCEEE
T ss_pred ccCCeeeCCccccCCCCEEEEEeCc--CCCCcceEEEEcCCC--CeEeEC--CCCCcccccceEEEE-CCEEEEECCCcC
Confidence 3567889999999999999999998 446788999999988 799988 678889999999887 6689999998
Q ss_pred --CCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcC
Q 048754 378 --GRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIP 455 (625)
Q Consensus 378 --~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 455 (625)
.....++++++||+.++ +|+.++.+ |.+|..|+++.+ +++|||+||.... ..++++++||+.+++ |+.++
T Consensus 82 ~~~~~~~~~~~~~~d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~-~~~~~~~~yd~~~~~--W~~~~ 153 (308)
T 1zgk_A 82 SPDGNTDSSALDCYNPMTN--QWSPCAPM--SVPRNRIGVGVI-DGHIYAVGGSHGC-IHHNSVERYEPERDE--WHLVA 153 (308)
T ss_dssp ETTEEEECCCEEEEETTTT--EEEECCCC--SSCCBTCEEEEE-TTEEEEECCEETT-EECCCEEEEETTTTE--EEECC
T ss_pred CCCCCeecceEEEECCCCC--eEeECCCC--CcCccccEEEEE-CCEEEEEcCCCCC-cccccEEEECCCCCe--EeECC
Confidence 45556889999999999 99999876 889999999988 5699999997653 467899999987765 99998
Q ss_pred CCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEE
Q 048754 456 TSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAV 535 (625)
Q Consensus 456 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~ 535 (625)
. +|.+|.+|+++++++ +||++||...... ++++++||+. +.+|+.+..+ |.+|..|+++
T Consensus 154 ~--~p~~r~~~~~~~~~~-~iyv~GG~~~~~~----~~~~~~yd~~--~~~W~~~~~~------------p~~r~~~~~~ 212 (308)
T 1zgk_A 154 P--MLTRRIGVGVAVLNR-LLYAVGGFDGTNR----LNSAECYYPE--RNEWRMITAM------------NTIRSGAGVC 212 (308)
T ss_dssp C--CSSCCBSCEEEEETT-EEEEECCBCSSCB----CCCEEEEETT--TTEEEECCCC------------SSCCBSCEEE
T ss_pred C--CCccccceEEEEECC-EEEEEeCCCCCCc----CceEEEEeCC--CCeEeeCCCC------------CCccccceEE
Confidence 6 788999999999976 9999999876543 5899999998 6799999765 7899999999
Q ss_pred EecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEE
Q 048754 536 SMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHEL 615 (625)
Q Consensus 536 ~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~ 615 (625)
.+ +++|||+||.+... ..+++++||+ .+++|+.+. .+|.+|.+|++++++ ++|||+||.++.. .++++++|
T Consensus 213 ~~-~~~iyv~GG~~~~~-~~~~v~~yd~--~~~~W~~~~---~~p~~r~~~~~~~~~-~~i~v~GG~~~~~-~~~~v~~y 283 (308)
T 1zgk_A 213 VL-HNCIYAAGGYDGQD-QLNSVERYDV--ETETWTFVA---PMKHRRSALGITVHQ-GRIYVLGGYDGHT-FLDSVECY 283 (308)
T ss_dssp EE-TTEEEEECCBCSSS-BCCCEEEEET--TTTEEEECC---CCSSCCBSCEEEEET-TEEEEECCBCSSC-BCCEEEEE
T ss_pred EE-CCEEEEEeCCCCCC-ccceEEEEeC--CCCcEEECC---CCCCCccceEEEEEC-CEEEEEcCcCCCc-ccceEEEE
Confidence 88 99999999987433 3789999999 789999985 678899999999986 5999999988754 58999999
Q ss_pred EccCCCCC
Q 048754 616 CLASKQDS 623 (625)
Q Consensus 616 ~~~~~~~~ 623 (625)
|+.++++.
T Consensus 284 d~~~~~W~ 291 (308)
T 1zgk_A 284 DPDTDTWS 291 (308)
T ss_dssp ETTTTEEE
T ss_pred cCCCCEEe
Confidence 99988764
No 2
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=4.1e-40 Score=334.93 Aligned_cols=286 Identities=17% Similarity=0.222 Sum_probs=227.3
Q ss_pred CCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCC-CCccceeEEEEcCCEEEEEccC-C
Q 048754 301 AVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSP-PGRWGHTLSSLNGSWLVVFGGC-G 378 (625)
Q Consensus 301 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p-~~r~~~~~~~~~~~~iyv~GG~-~ 378 (625)
++|.+|.+|++++++++|||+||... +++|+||+.+.+++|+++ +++| .+|.+|+++++ +++|||+||. .
T Consensus 5 ~lP~~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~d~~~~~~~W~~~--~~~p~~~R~~~~~~~~-~~~lyv~GG~~~ 76 (357)
T 2uvk_A 5 ETPVPFKSGTGAIDNDTVYIGLGSAG-----TAWYKLDTQAKDKKWTAL--AAFPGGPRDQATSAFI-DGNLYVFGGIGK 76 (357)
T ss_dssp CCSSCCCSCEEEEETTEEEEECGGGT-----TCEEEEETTSSSCCEEEC--CCCTTCCCBSCEEEEE-TTEEEEECCEEE
T ss_pred CCCccccceEEEEECCEEEEEeCcCC-----CeEEEEccccCCCCeeEC--CCCCCCcCccceEEEE-CCEEEEEcCCCC
Confidence 67889999999999999999999754 379999998544799988 6677 79999999988 5689999998 2
Q ss_pred ----CCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCC---------------------
Q 048754 379 ----RQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAG--------------------- 433 (625)
Q Consensus 379 ----~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~--------------------- 433 (625)
....++++|+||+.++ +|+.++.+. |.+|.+|+++.. +++|||+||.....
T Consensus 77 ~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~-p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (357)
T 2uvk_A 77 NSEGLTQVFNDVHKYNPKTN--SWVKLMSHA-PMGMAGHVTFVH-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKI 152 (357)
T ss_dssp CTTSCEEECCCEEEEETTTT--EEEECSCCC-SSCCSSEEEEEE-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCccceeeccEEEEeCCCC--cEEECCCCC-CcccccceEEEE-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhh
Confidence 2336899999999999 999999874 689999999887 66999999975321
Q ss_pred ------------ceeceEEEEecCCCCCceEEcCCCCCCCCCC-cceEEEECCcEEEEEcCCcCCCCcccccCceEEEEc
Q 048754 434 ------------VLLSDTYLLDLTTDKPMWREIPTSWSPPSRL-GHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDL 500 (625)
Q Consensus 434 ------------~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~-~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~ 500 (625)
..++++++||+.+++ |+.+.. +|.+|. +|+++++++ +||++||....+. .+++++.||+
T Consensus 153 ~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~--~p~~~~~~~~~~~~~~-~iyv~GG~~~~~~---~~~~v~~~d~ 224 (357)
T 2uvk_A 153 NAHYFDKKAEDYFFNKFLLSFDPSTQQ--WSYAGE--SPWYGTAGAAVVNKGD-KTWLINGEAKPGL---RTDAVFELDF 224 (357)
T ss_dssp HHHHHSSCGGGGCCCCEEEEEETTTTE--EEEEEE--CSSCCCBSCEEEEETT-EEEEECCEEETTE---ECCCEEEEEC
T ss_pred hhhhccccccccCCcccEEEEeCCCCc--EEECCC--CCCCCcccccEEEECC-EEEEEeeecCCCc---ccCceEEEEe
Confidence 246899999987765 999965 666554 488888876 9999999875442 3689999998
Q ss_pred CCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC----------------CCCCCcEEEEeCC
Q 048754 501 GDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG----------------LHSPSQLFLLDPS 564 (625)
Q Consensus 501 ~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~----------------~~~~~~v~~~d~~ 564 (625)
+.++.+|+.+..+ ..|.+|.+|+++.. +++|||+||.+.. .....++++||+
T Consensus 225 d~~~~~W~~~~~~----------~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~- 292 (357)
T 2uvk_A 225 TGNNLKWNKLAPV----------SSPDGVAGGFAGIS-NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLW- 292 (357)
T ss_dssp C---CEEEECCCS----------STTTCCBSCEEEEE-TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEEC-
T ss_pred cCCCCcEEecCCC----------CCCcccccceEEEE-CCEEEEEcCccccCCcccccccceeccccccceeeEEEEec-
Confidence 4447899999876 23555678888888 8999999997432 112368999999
Q ss_pred CCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCCCCC
Q 048754 565 EEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQDS 623 (625)
Q Consensus 565 ~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~~~~ 623 (625)
.+++|+.+. .+|.+|.+|++++++ ++||||||++..+..++|+++|++++++..
T Consensus 293 -~~~~W~~~~---~~p~~r~~~~~~~~~-~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 293 -HNGKWDKSG---ELSQGRAYGVSLPWN-NSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp -C---CEEEE---ECSSCCBSSEEEEET-TEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred -CCCceeeCC---CCCCCcccceeEEeC-CEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 799999984 678899999998886 599999999988777899999999988764
No 3
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=315.74 Aligned_cols=271 Identities=15% Similarity=0.240 Sum_probs=228.6
Q ss_pred ceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEE
Q 048754 310 SACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVL 389 (625)
Q Consensus 310 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 389 (625)
..+.+++.||++||... ..++++++||+.+ ++|.++ +.+|.+|.+|+++++ +++||++||..+...++++++|
T Consensus 10 ~~~~~~~~i~v~GG~~~--~~~~~~~~~d~~~--~~W~~~--~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~ 82 (302)
T 2xn4_A 10 TPMNLPKLMVVVGGQAP--KAIRSVECYDFKE--ERWHQV--AELPSRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSY 82 (302)
T ss_dssp -----CEEEEEECCBSS--SBCCCEEEEETTT--TEEEEE--CCCSSCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEE
T ss_pred cccCCCCEEEEECCCCC--CCCCcEEEEcCcC--CcEeEc--ccCCcccccceEEEE-CCEEEEEeCcCCCccccceEEE
Confidence 34457889999999754 4678899999998 799988 678889999999887 6689999999877788999999
Q ss_pred ECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEE
Q 048754 390 DLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLS 469 (625)
Q Consensus 390 d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~ 469 (625)
|+.++ +|+.++.+ |.+|..|+++.+ ++++||+||.... ..++++++||+.+++ |+.++. +|.+|..|+++
T Consensus 83 d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~-~~~~~~~~~d~~~~~--W~~~~~--~p~~r~~~~~~ 152 (302)
T 2xn4_A 83 DPVKD--QWTSVANM--RDRRSTLGAAVL-NGLLYAVGGFDGS-TGLSSVEAYNIKSNE--WFHVAP--MNTRRSSVGVG 152 (302)
T ss_dssp ETTTT--EEEEECCC--SSCCBSCEEEEE-TTEEEEEEEECSS-CEEEEEEEEETTTTE--EEEECC--CSSCCBSCEEE
T ss_pred CCCCC--ceeeCCCC--CccccceEEEEE-CCEEEEEcCCCCC-ccCceEEEEeCCCCe--EeecCC--CCCcccCceEE
Confidence 99999 99999976 889999999988 5699999998654 467899999987766 999976 78899999999
Q ss_pred EECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCC
Q 048754 470 VYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSI 549 (625)
Q Consensus 470 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~ 549 (625)
++++ +||++||...... ..++++++||+. +.+|+.+..+ |.+|..|+++.. +++|||+||.+
T Consensus 153 ~~~~-~iyv~GG~~~~~~--~~~~~~~~yd~~--~~~W~~~~~~------------p~~r~~~~~~~~-~~~iyv~GG~~ 214 (302)
T 2xn4_A 153 VVGG-LLYAVGGYDVASR--QCLSTVECYNAT--TNEWTYIAEM------------STRRSGAGVGVL-NNLLYAVGGHD 214 (302)
T ss_dssp EETT-EEEEECCEETTTT--EECCCEEEEETT--TTEEEEECCC------------SSCCBSCEEEEE-TTEEEEECCBS
T ss_pred EECC-EEEEEeCCCCCCC--ccccEEEEEeCC--CCcEEECCCC------------ccccccccEEEE-CCEEEEECCCC
Confidence 9977 9999999876542 135899999998 6799999765 789999999988 89999999986
Q ss_pred CCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCCCCC
Q 048754 550 AGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQDS 623 (625)
Q Consensus 550 ~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~~~~ 623 (625)
.. ...+++++||+ .+++|+.+. .+|.+|.+|++++++ ++|||+||.++.. .++++++||+.++++.
T Consensus 215 ~~-~~~~~~~~yd~--~~~~W~~~~---~~~~~r~~~~~~~~~-~~i~v~GG~~~~~-~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 215 GP-LVRKSVEVYDP--TTNAWRQVA---DMNMCRRNAGVCAVN-GLLYVVGGDDGSC-NLASVEYYNPTTDKWT 280 (302)
T ss_dssp SS-SBCCCEEEEET--TTTEEEEEC---CCSSCCBSCEEEEET-TEEEEECCBCSSS-BCCCEEEEETTTTEEE
T ss_pred CC-cccceEEEEeC--CCCCEeeCC---CCCCccccCeEEEEC-CEEEEECCcCCCc-ccccEEEEcCCCCeEE
Confidence 43 34789999999 789999995 677889999998886 5999999988764 4899999999887653
No 4
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=315.48 Aligned_cols=268 Identities=17% Similarity=0.222 Sum_probs=232.0
Q ss_pred eeeeecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCcccee
Q 048754 283 RELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHT 362 (625)
Q Consensus 283 ~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~ 362 (625)
...|++...+|..++ .+|.+|.+|+++.++++|||+||.... ..++++++||+.+ ++|+++ +++|.+|.+|+
T Consensus 32 ~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~--~~W~~~--~~~p~~r~~~~ 103 (302)
T 2xn4_A 32 VECYDFKEERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNGS-LRVRTVDSYDPVK--DQWTSV--ANMRDRRSTLG 103 (302)
T ss_dssp EEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEESCBCSS-SBCCCEEEEETTT--TEEEEE--CCCSSCCBSCE
T ss_pred EEEEcCcCCcEeEcc---cCCcccccceEEEECCEEEEEeCcCCC-ccccceEEECCCC--CceeeC--CCCCccccceE
Confidence 456899999999986 788899999999999999999998643 5678999999988 799988 67889999999
Q ss_pred EEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCC-ceeceEEE
Q 048754 363 LSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAG-VLLSDTYL 441 (625)
Q Consensus 363 ~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~ 441 (625)
++++ +++||++||......++++++||+.++ +|+.++.+ |.+|..|+++.+ +++||++||..... ..++++++
T Consensus 104 ~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~ 177 (302)
T 2xn4_A 104 AAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSN--EWFHVAPM--NTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVEC 177 (302)
T ss_dssp EEEE-TTEEEEEEEECSSCEEEEEEEEETTTT--EEEEECCC--SSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEE
T ss_pred EEEE-CCEEEEEcCCCCCccCceEEEEeCCCC--eEeecCCC--CCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEE
Confidence 9988 568999999987778899999999999 99999876 889999999888 56999999986554 46789999
Q ss_pred EecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCC
Q 048754 442 LDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQ 521 (625)
Q Consensus 442 ~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~ 521 (625)
||+.+++ |+.++. +|.+|.+|+++++++ +||++||.+.... .+++++||+. +.+|+.+..+
T Consensus 178 yd~~~~~--W~~~~~--~p~~r~~~~~~~~~~-~iyv~GG~~~~~~----~~~~~~yd~~--~~~W~~~~~~-------- 238 (302)
T 2xn4_A 178 YNATTNE--WTYIAE--MSTRRSGAGVGVLNN-LLYAVGGHDGPLV----RKSVEVYDPT--TNAWRQVADM-------- 238 (302)
T ss_dssp EETTTTE--EEEECC--CSSCCBSCEEEEETT-EEEEECCBSSSSB----CCCEEEEETT--TTEEEEECCC--------
T ss_pred EeCCCCc--EEECCC--CccccccccEEEECC-EEEEECCCCCCcc----cceEEEEeCC--CCCEeeCCCC--------
Confidence 9987766 999975 788999999999976 9999999875432 5899999998 6799999765
Q ss_pred CCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECC
Q 048754 522 SAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGG 593 (625)
Q Consensus 522 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~ 593 (625)
|.+|..|+++.+ +++|||+||.+.. ...+++++||+ .+++|+.+. ..+|.+|.+|+++++++
T Consensus 239 ----~~~r~~~~~~~~-~~~i~v~GG~~~~-~~~~~v~~yd~--~~~~W~~~~--~~~~~~r~~~~~~~~~~ 300 (302)
T 2xn4_A 239 ----NMCRRNAGVCAV-NGLLYVVGGDDGS-CNLASVEYYNP--TTDKWTVVS--SCMSTGRSYAGVTVIDK 300 (302)
T ss_dssp ----SSCCBSCEEEEE-TTEEEEECCBCSS-SBCCCEEEEET--TTTEEEECS--SCCSSCCBSCEEEEEEC
T ss_pred ----CCccccCeEEEE-CCEEEEECCcCCC-cccccEEEEcC--CCCeEEECC--cccCcccccceEEEecc
Confidence 788999998888 9999999998643 34789999999 789999985 36788999999999864
No 5
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=316.84 Aligned_cols=266 Identities=17% Similarity=0.217 Sum_probs=229.6
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
.+.||++||... .+++++||+.+ ++|..+ +.+|.+|.+|+++++ +++|||+||.. ...++++++||+.++
T Consensus 11 ~~~l~~~GG~~~----~~~~~~~d~~~--~~W~~~--~~~p~~r~~~~~~~~-~~~lyv~GG~~-~~~~~~~~~~d~~~~ 80 (306)
T 3ii7_A 11 HDYRIALFGGSQ----PQSCRYFNPKD--YSWTDI--RCPFEKRRDAACVFW-DNVVYILGGSQ-LFPIKRMDCYNVVKD 80 (306)
T ss_dssp CCEEEEEECCSS----TTSEEEEETTT--TEEEEC--CCCSCCCBSCEEEEE-TTEEEEECCBS-SSBCCEEEEEETTTT
T ss_pred cceEEEEeCCCC----CceEEEecCCC--CCEecC--CCCCcccceeEEEEE-CCEEEEEeCCC-CCCcceEEEEeCCCC
Confidence 478999999754 78899999988 799988 678889999999988 66899999988 667899999999999
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
+|..++.+ |.+|.+|+++.+ ++++||+||.......++++++||+.+++ |+.++. +|.+|..|+++++++
T Consensus 81 --~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~--~p~~r~~~~~~~~~~- 150 (306)
T 3ii7_A 81 --SWYSKLGP--PTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTES--WHTKPS--MLTQRCSHGMVEANG- 150 (306)
T ss_dssp --EEEEEECC--SSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTE--EEEECC--CSSCCBSCEEEEETT-
T ss_pred --eEEECCCC--CccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCc--eEeCCC--CcCCcceeEEEEECC-
Confidence 99999876 889999999988 66999999987566688999999987766 999976 888999999999877
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS 554 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~ 554 (625)
+||++||..........++++++||+. +.+|+.+..+ |.+|..|+++.. +++|||+||.+.. ..
T Consensus 151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~------------p~~r~~~~~~~~-~~~i~v~GG~~~~-~~ 214 (306)
T 3ii7_A 151 LIYVCGGSLGNNVSGRVLNSCEVYDPA--TETWTELCPM------------IEARKNHGLVFV-KDKIFAVGGQNGL-GG 214 (306)
T ss_dssp EEEEECCEESCTTTCEECCCEEEEETT--TTEEEEECCC------------SSCCBSCEEEEE-TTEEEEECCEETT-EE
T ss_pred EEEEECCCCCCCCcccccceEEEeCCC--CCeEEECCCc------------cchhhcceEEEE-CCEEEEEeCCCCC-CC
Confidence 999999987655422236899999999 6799999765 789999999998 9999999998654 33
Q ss_pred CCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCCCCC
Q 048754 555 PSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQDS 623 (625)
Q Consensus 555 ~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~~~~ 623 (625)
.+++++||+ .+++|+.+. .+|.+|.+|++++++ ++|||+||.++.. .++++++||+.++++.
T Consensus 215 ~~~~~~yd~--~~~~W~~~~---~~p~~r~~~~~~~~~-~~i~v~GG~~~~~-~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 215 LDNVEYYDI--KLNEWKMVS---PMPWKGVTVKCAAVG-SIVYVLAGFQGVG-RLGHILEYNTETDKWV 276 (306)
T ss_dssp BCCEEEEET--TTTEEEECC---CCSCCBSCCEEEEET-TEEEEEECBCSSS-BCCEEEEEETTTTEEE
T ss_pred CceEEEeeC--CCCcEEECC---CCCCCccceeEEEEC-CEEEEEeCcCCCe-eeeeEEEEcCCCCeEE
Confidence 789999999 789999984 678899999999996 5999999998765 5899999999988764
No 6
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=1.2e-38 Score=316.75 Aligned_cols=265 Identities=16% Similarity=0.201 Sum_probs=229.8
Q ss_pred eeeeecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccC---CCCCCCCCeEEEeccCCCCceEEcccCCCCCCcc
Q 048754 283 RELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEG---VNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRW 359 (625)
Q Consensus 283 ~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~---~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~ 359 (625)
...||+.+.+|..++ .+|.+|.+|++++++++|||+||.. .....++++++||+.+ ++|+++ +++|.+|.
T Consensus 41 ~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~--~~W~~~--~~~p~~r~ 113 (308)
T 1zgk_A 41 LEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMT--NQWSPC--APMSVPRN 113 (308)
T ss_dssp EEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTT--TEEEEC--CCCSSCCB
T ss_pred EEEEcCCCCeEeECC---CCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCC--CeEeEC--CCCCcCcc
Confidence 467899999999986 7888999999999999999999984 3345678999999988 799988 67888999
Q ss_pred ceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceE
Q 048754 360 GHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDT 439 (625)
Q Consensus 360 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 439 (625)
+|+++++ +++||++||......++++++||+.++ +|+.++.+ |.+|.+|+++.+ +++||++||..... .++++
T Consensus 114 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~-~~~~~ 186 (308)
T 1zgk_A 114 RIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERD--EWHLVAPM--LTRRIGVGVAVL-NRLLYAVGGFDGTN-RLNSA 186 (308)
T ss_dssp TCEEEEE-TTEEEEECCEETTEECCCEEEEETTTT--EEEECCCC--SSCCBSCEEEEE-TTEEEEECCBCSSC-BCCCE
T ss_pred ccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCC--eEeECCCC--CccccceEEEEE-CCEEEEEeCCCCCC-cCceE
Confidence 9999988 568999999987777899999999999 99999876 889999999988 66999999986554 47899
Q ss_pred EEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcC
Q 048754 440 YLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVG 519 (625)
Q Consensus 440 ~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~ 519 (625)
++||+.+++ |+.++. +|.+|..|+++++++ +||++||...... .+++++||+. +.+|+.+..+
T Consensus 187 ~~yd~~~~~--W~~~~~--~p~~r~~~~~~~~~~-~iyv~GG~~~~~~----~~~v~~yd~~--~~~W~~~~~~------ 249 (308)
T 1zgk_A 187 ECYYPERNE--WRMITA--MNTIRSGAGVCVLHN-CIYAAGGYDGQDQ----LNSVERYDVE--TETWTFVAPM------ 249 (308)
T ss_dssp EEEETTTTE--EEECCC--CSSCCBSCEEEEETT-EEEEECCBCSSSB----CCCEEEEETT--TTEEEECCCC------
T ss_pred EEEeCCCCe--EeeCCC--CCCccccceEEEECC-EEEEEeCCCCCCc----cceEEEEeCC--CCcEEECCCC------
Confidence 999987765 999975 888999999999976 9999999875443 5899999999 6799999765
Q ss_pred CCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEE
Q 048754 520 SQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVV 591 (625)
Q Consensus 520 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~ 591 (625)
|.+|..|+++.+ +++|||+||.+.. ...+++++||+ .+++|+.+. .+|.+|.+|+++++
T Consensus 250 ------p~~r~~~~~~~~-~~~i~v~GG~~~~-~~~~~v~~yd~--~~~~W~~~~---~~p~~r~~~~~~~l 308 (308)
T 1zgk_A 250 ------KHRRSALGITVH-QGRIYVLGGYDGH-TFLDSVECYDP--DTDTWSEVT---RMTSGRSGVGVAVT 308 (308)
T ss_dssp ------SSCCBSCEEEEE-TTEEEEECCBCSS-CBCCEEEEEET--TTTEEEEEE---ECSSCCBSCEEEEC
T ss_pred ------CCCccceEEEEE-CCEEEEEcCcCCC-cccceEEEEcC--CCCEEeecC---CCCCCcccceeEeC
Confidence 788999999988 8999999998653 34789999999 789999994 68899999998864
No 7
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=314.89 Aligned_cols=267 Identities=16% Similarity=0.205 Sum_probs=231.5
Q ss_pred ceeeeecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccce
Q 048754 282 ARELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGH 361 (625)
Q Consensus 282 ~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~ 361 (625)
....||+.+.+|..++ .+|.+|.+|++++++++|||+||.. ...++++++||+.+ ++|..+ +++|.+|.+|
T Consensus 25 ~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~--~~W~~~--~~~p~~r~~~ 95 (306)
T 3ii7_A 25 SCRYFNPKDYSWTDIR---CPFEKRRDAACVFWDNVVYILGGSQ--LFPIKRMDCYNVVK--DSWYSK--LGPPTPRDSL 95 (306)
T ss_dssp SEEEEETTTTEEEECC---CCSCCCBSCEEEEETTEEEEECCBS--SSBCCEEEEEETTT--TEEEEE--ECCSSCCBSC
T ss_pred eEEEecCCCCCEecCC---CCCcccceeEEEEECCEEEEEeCCC--CCCcceEEEEeCCC--CeEEEC--CCCCccccce
Confidence 3557899999999986 6888999999999999999999987 56789999999998 799988 6688999999
Q ss_pred eEEEEcCCEEEEEccCC-CCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCc---eec
Q 048754 362 TLSSLNGSWLVVFGGCG-RQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGV---LLS 437 (625)
Q Consensus 362 ~~~~~~~~~iyv~GG~~-~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~---~~~ 437 (625)
+++++ +++|||+||.. ....++++++||+.++ +|+.++.+ |.+|..|+++.+ ++++|++||...... .++
T Consensus 96 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 96 AACAA-EGKIYTSGGSEVGNSALYLFECYDTRTE--SWHTKPSM--LTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp EEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTT--EEEEECCC--SSCCBSCEEEEE-TTEEEEECCEESCTTTCEECC
T ss_pred eEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCC--ceEeCCCC--cCCcceeEEEEE-CCEEEEECCCCCCCCcccccc
Confidence 99988 66899999987 5567899999999999 99999876 889999999888 569999999865543 389
Q ss_pred eEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccC
Q 048754 438 DTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTG 517 (625)
Q Consensus 438 ~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~ 517 (625)
++++||+.+++ |+.++. +|.+|..|+++++++ +||++||...... .+++++||+. +.+|+.+..+
T Consensus 170 ~~~~yd~~~~~--W~~~~~--~p~~r~~~~~~~~~~-~i~v~GG~~~~~~----~~~~~~yd~~--~~~W~~~~~~---- 234 (306)
T 3ii7_A 170 SCEVYDPATET--WTELCP--MIEARKNHGLVFVKD-KIFAVGGQNGLGG----LDNVEYYDIK--LNEWKMVSPM---- 234 (306)
T ss_dssp CEEEEETTTTE--EEEECC--CSSCCBSCEEEEETT-EEEEECCEETTEE----BCCEEEEETT--TTEEEECCCC----
T ss_pred eEEEeCCCCCe--EEECCC--ccchhhcceEEEECC-EEEEEeCCCCCCC----CceEEEeeCC--CCcEEECCCC----
Confidence 99999987766 999985 888999999999976 9999999876532 5899999999 6799999765
Q ss_pred cCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECC
Q 048754 518 VGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGG 593 (625)
Q Consensus 518 ~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~ 593 (625)
|.+|..|+++.+ +++|||+||.+... ..+++++||+ .+++|+.+. .+|.+|.+|+++++.+
T Consensus 235 --------p~~r~~~~~~~~-~~~i~v~GG~~~~~-~~~~~~~yd~--~~~~W~~~~---~~~~~r~~~~~~~~~~ 295 (306)
T 3ii7_A 235 --------PWKGVTVKCAAV-GSIVYVLAGFQGVG-RLGHILEYNT--ETDKWVANS---KVRAFPVTSCLICVVD 295 (306)
T ss_dssp --------SCCBSCCEEEEE-TTEEEEEECBCSSS-BCCEEEEEET--TTTEEEEEE---EEECCSCTTCEEEEEE
T ss_pred --------CCCccceeEEEE-CCEEEEEeCcCCCe-eeeeEEEEcC--CCCeEEeCC---CcccccceeEEEEECC
Confidence 789999999998 99999999986443 4789999999 789999995 6678999999988754
No 8
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=3.6e-38 Score=312.64 Aligned_cols=268 Identities=19% Similarity=0.244 Sum_probs=229.4
Q ss_pred EECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECC
Q 048754 313 AAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 313 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
.+++.||++||.......++++++||+.+ ++|..+ +.+|.+|.+|+++.+ +++||++||..+...++++++||+.
T Consensus 12 ~~~~~i~~~GG~~~~~~~~~~~~~~d~~~--~~W~~~--~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~ 86 (301)
T 2vpj_A 12 GANEVLLVVGGFGSQQSPIDVVEKYDPKT--QEWSFL--PSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYT 86 (301)
T ss_dssp -CCEEEEEECCEETTTEECCCEEEEETTT--TEEEEC--CCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred cCCCEEEEEeCccCCCcceeEEEEEcCCC--CeEEeC--CCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECC
Confidence 36889999999545556788999999988 799988 567889999999987 5689999999877788999999999
Q ss_pred CCCCE---EEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEE
Q 048754 393 AKQPT---WIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLS 469 (625)
Q Consensus 393 t~~~~---W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~ 469 (625)
++ + |+.++.+ |.+|..|+++.+ ++++|++||.... ..++++++||+.+.+ |+.++. +|.+|..|+++
T Consensus 87 ~~--~~~~W~~~~~~--p~~r~~~~~~~~-~~~lyv~GG~~~~-~~~~~~~~~d~~~~~--W~~~~~--~p~~r~~~~~~ 156 (301)
T 2vpj_A 87 AD--EDGVWYSVAPM--NVRRGLAGATTL-GDMIYVSGGFDGS-RRHTSMERYDPNIDQ--WSMLGD--MQTAREGAGLV 156 (301)
T ss_dssp CC--TTCCCEEECCC--SSCCBSCEEEEE-TTEEEEECCBCSS-CBCCEEEEEETTTTE--EEEEEE--CSSCCBSCEEE
T ss_pred CC--CCCeeEECCCC--CCCccceeEEEE-CCEEEEEcccCCC-cccceEEEEcCCCCe--EEECCC--CCCCcccceEE
Confidence 98 8 9999876 889999999988 5699999998754 357899999987766 999975 78899999999
Q ss_pred EECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCC
Q 048754 470 VYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSI 549 (625)
Q Consensus 470 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~ 549 (625)
++++ +||++||..... ..+++++||+. +.+|+.+..+ |.+|..|+++.. +++|||+||.+
T Consensus 157 ~~~~-~iyv~GG~~~~~----~~~~~~~~d~~--~~~W~~~~~~------------p~~r~~~~~~~~-~~~i~v~GG~~ 216 (301)
T 2vpj_A 157 VASG-VIYCLGGYDGLN----ILNSVEKYDPH--TGHWTNVTPM------------ATKRSGAGVALL-NDHIYVVGGFD 216 (301)
T ss_dssp EETT-EEEEECCBCSSC----BCCCEEEEETT--TTEEEEECCC------------SSCCBSCEEEEE-TTEEEEECCBC
T ss_pred EECC-EEEEECCCCCCc----ccceEEEEeCC--CCcEEeCCCC------------CcccccceEEEE-CCEEEEEeCCC
Confidence 9976 999999987654 26899999999 6799999755 789999999988 89999999986
Q ss_pred CCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCCCCC
Q 048754 550 AGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQDS 623 (625)
Q Consensus 550 ~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~~~~ 623 (625)
... ..+++++||+ .+++|+.+. .+|.+|.+|++++++ ++|||+||.++.. .++++++||+.++++.
T Consensus 217 ~~~-~~~~v~~yd~--~~~~W~~~~---~~p~~r~~~~~~~~~-~~i~v~GG~~~~~-~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 217 GTA-HLSSVEAYNI--RTDSWTTVT---SMTTPRCYVGATVLR-GRLYAIAGYDGNS-LLSSIECYDPIIDSWE 282 (301)
T ss_dssp SSS-BCCCEEEEET--TTTEEEEEC---CCSSCCBSCEEEEET-TEEEEECCBCSSS-BEEEEEEEETTTTEEE
T ss_pred CCc-ccceEEEEeC--CCCcEEECC---CCCCcccceeEEEEC-CEEEEEcCcCCCc-ccccEEEEcCCCCeEE
Confidence 543 3789999999 789999995 678899999999886 5999999988765 5799999999887653
No 9
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=3.7e-39 Score=321.67 Aligned_cols=278 Identities=17% Similarity=0.185 Sum_probs=232.4
Q ss_pred cceeeeecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccC-----CCCCCCCCeEEEeccCCCCceEEcccCCCC
Q 048754 281 LARELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEG-----VNMQPMDDTFVLNLDAANPEWRRVSVKSSP 355 (625)
Q Consensus 281 ~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-----~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p 355 (625)
.....||+.+.+|...+ .+.|.+|.+|++++++++|||+||.. ......+++++||+.+ ++|+++ +++|
T Consensus 13 ~~~~~yd~~~~~W~~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~--~~W~~~--~~~p 86 (315)
T 4asc_A 13 EGAVAYDPAANECYCAS--LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD--SEWLGM--PPLP 86 (315)
T ss_dssp TEEEEEETTTTEEEEEE--CCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTT--TEEEEC--CCBS
T ss_pred CceEEECCCCCeEecCC--CCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCC--CeEEEC--CCCC
Confidence 34567899999998733 23366899999999999999999963 2223356699999988 799987 6788
Q ss_pred CCccceeEEEEcCCEEEEEccCC---CCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCC
Q 048754 356 PGRWGHTLSSLNGSWLVVFGGCG---RQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDA 432 (625)
Q Consensus 356 ~~r~~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~ 432 (625)
.+|.+|+++++ +++|||+||.. +...++++++||+.++ +|+.++++ |.+|.+|+++.+ +++|||+||....
T Consensus 87 ~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~ 160 (315)
T 4asc_A 87 SPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSF--KWGESDPL--PYVVYGHTVLSH-MDLVYVIGGKGSD 160 (315)
T ss_dssp SCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTT--EEEECCCC--SSCCBSCEEEEE-TTEEEEECCBCTT
T ss_pred cchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCC--cEeECCCC--CCcccceeEEEE-CCEEEEEeCCCCC
Confidence 99999999988 66999999974 3557899999999999 99999876 889999999988 5599999998666
Q ss_pred CceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeee
Q 048754 433 GVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLEC 512 (625)
Q Consensus 433 ~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~ 512 (625)
...++++++||+.+++ |+.++. +|.+|..|+++++++ +||++||...... ++++++||+. +.+|+.+..
T Consensus 161 ~~~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~~~~~~-~iyv~GG~~~~~~----~~~~~~yd~~--~~~W~~~~~ 229 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFE--WKELAP--MQTARSLFGATVHDG-RIIVAAGVTDTGL----TSSAEVYSIT--DNKWAPFEA 229 (315)
T ss_dssp SCBCCCEEEEETTTTE--EEECCC--CSSCCBSCEEEEETT-EEEEEEEECSSSE----EEEEEEEETT--TTEEEEECC
T ss_pred CcccceEEEEeCCCCe--EEECCC--CCCchhceEEEEECC-EEEEEeccCCCCc----cceEEEEECC--CCeEEECCC
Confidence 7788999999987765 999986 888999999999977 9999999876543 5899999999 679999976
Q ss_pred ccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC----C----CCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCC
Q 048754 513 NAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG----L----HSPSQLFLLDPSEEKPSWRILNVPGQPPKFAW 584 (625)
Q Consensus 513 ~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~----~----~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~ 584 (625)
+ |.+|..|+++.+ +++|||+||.+.. . ...+++++||+ .+++|+.+ +|.+|.
T Consensus 230 ~------------p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~-----~~~~r~ 289 (315)
T 4asc_A 230 F------------PQERSSLSLVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNE--EEKKWEGV-----LREIAY 289 (315)
T ss_dssp C------------SSCCBSCEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET--TTTEEEEE-----ESCSSC
T ss_pred C------------CCcccceeEEEE-CCEEEEECCccccCcCCccccccccCcEEEecC--CCChhhhh-----ccCCcC
Confidence 5 889999999988 8999999998531 1 23579999999 78999998 466788
Q ss_pred cceEEEECCcEEEEEcCc
Q 048754 585 GHSTCVVGGTRVLVLGGH 602 (625)
Q Consensus 585 ~~~~~~~~~~~i~i~GG~ 602 (625)
+|++++++ ++||++...
T Consensus 290 ~~~~~~~~-~~l~v~~~~ 306 (315)
T 4asc_A 290 AAGATFLP-VRLNVLRLT 306 (315)
T ss_dssp CSSCEEEE-EEECGGGSE
T ss_pred ccceEEeC-CEEEEEEeh
Confidence 89998887 599998753
No 10
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=1e-38 Score=318.90 Aligned_cols=278 Identities=18% Similarity=0.270 Sum_probs=232.1
Q ss_pred cccceeeeecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCC-----CCCCCCeEEEeccCCCCceEEcccCC
Q 048754 279 GRLARELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVN-----MQPMDDTFVLNLDAANPEWRRVSVKS 353 (625)
Q Consensus 279 ~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~-----~~~~~~~~~~~~~~~~~~W~~~~~~~ 353 (625)
+......||+.+.+|...+. ..|.+|.+|+++..+++|||+||.... ....+++++||+.+ ++|.++ ++
T Consensus 22 GG~~~~~yd~~~~~W~~~~~--~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~--~~W~~~--~~ 95 (318)
T 2woz_A 22 NDTAAVAYDPMENECYLTAL--AEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVS--SEWVGL--PP 95 (318)
T ss_dssp CSSEEEEEETTTTEEEEEEE--CTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTT--TEEEEC--SC
T ss_pred cccceEEECCCCCceecccC--CccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCC--CcEEEC--CC
Confidence 33446789999999998542 345689999999999999999996421 12234599999988 799987 67
Q ss_pred CCCCccceeEEEEcCCEEEEEccCC--CCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCC
Q 048754 354 SPPGRWGHTLSSLNGSWLVVFGGCG--RQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTD 431 (625)
Q Consensus 354 ~p~~r~~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~ 431 (625)
+|.+|.+|+++++ +++|||+||.. ....++++++||+.++ +|+.++.+ |.+|.+|+++.. +++|||+||...
T Consensus 96 ~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~ 169 (318)
T 2woz_A 96 LPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAA--KWSEVKNL--PIKVYGHNVISH-NGMIYCLGGKTD 169 (318)
T ss_dssp BSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTT--EEEEECCC--SSCEESCEEEEE-TTEEEEECCEES
T ss_pred CCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCC--CEeECCCC--CCcccccEEEEE-CCEEEEEcCCCC
Confidence 8899999999988 56899999985 4557899999999999 99999876 889999999887 669999999876
Q ss_pred CCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEee
Q 048754 432 AGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLE 511 (625)
Q Consensus 432 ~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~ 511 (625)
....++++++||+.+++ |+.++. +|.+|..|+++++++ +||++||...... .+++++||+. +.+|+.+.
T Consensus 170 ~~~~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~~~~~~-~iyv~GG~~~~~~----~~~~~~yd~~--~~~W~~~~ 238 (318)
T 2woz_A 170 DKKCTNRVFIYNPKKGD--WKDLAP--MKTPRSMFGVAIHKG-KIVIAGGVTEDGL----SASVEAFDLK--TNKWEVMT 238 (318)
T ss_dssp SSCBCCCEEEEETTTTE--EEEECC--CSSCCBSCEEEEETT-EEEEEEEEETTEE----EEEEEEEETT--TCCEEECC
T ss_pred CCCccceEEEEcCCCCE--EEECCC--CCCCcccceEEEECC-EEEEEcCcCCCCc----cceEEEEECC--CCeEEECC
Confidence 66778999999987766 999985 889999999999877 9999999876432 5899999999 67999997
Q ss_pred eccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC--------CCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCC
Q 048754 512 CNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG--------LHSPSQLFLLDPSEEKPSWRILNVPGQPPKFA 583 (625)
Q Consensus 512 ~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~--------~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r 583 (625)
.+ |.+|..|+++.+ +++|||+||.+.. ....+++|+||+ .+++|+.+ +|.+|
T Consensus 239 ~~------------p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~-----~~~~r 298 (318)
T 2woz_A 239 EF------------PQERSSISLVSL-AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYED--DKKEWAGM-----LKEIR 298 (318)
T ss_dssp CC------------SSCCBSCEEEEE-TTEEEEECCBCCBC----CCBCCBCCCEEEEET--TTTEEEEE-----ESCCG
T ss_pred CC------------CCcccceEEEEE-CCEEEEECCeeccCCCCceeccceeeeEEEEeC--CCCEehhh-----ccccc
Confidence 65 788999999988 8999999998642 133689999999 78999998 47788
Q ss_pred CcceEEEECCcEEEEEc
Q 048754 584 WGHSTCVVGGTRVLVLG 600 (625)
Q Consensus 584 ~~~~~~~~~~~~i~i~G 600 (625)
++|++++++ ++|||+.
T Consensus 299 ~~~~~~~~~-~~iyi~~ 314 (318)
T 2woz_A 299 YASGASCLA-TRLNLFK 314 (318)
T ss_dssp GGTTCEEEE-EEEEGGG
T ss_pred ccccceeeC-CEEEEEE
Confidence 999999887 5999875
No 11
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=309.33 Aligned_cols=265 Identities=17% Similarity=0.272 Sum_probs=229.7
Q ss_pred eeeeecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCc---eEEcccCCCCCCcc
Q 048754 283 RELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPE---WRRVSVKSSPPGRW 359 (625)
Q Consensus 283 ~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~---W~~~~~~~~p~~r~ 359 (625)
...|++.+.+|..++ .+|.+|.+|+++.++++||++||.. ....++++++||+.+ ++ |+.+ +++|.+|.
T Consensus 33 ~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~l~v~GG~~-~~~~~~~~~~~d~~~--~~~~~W~~~--~~~p~~r~ 104 (301)
T 2vpj_A 33 VEKYDPKTQEWSFLP---SITRKRRYVASVSLHDRIYVIGGYD-GRSRLSSVECLDYTA--DEDGVWYSV--APMNVRRG 104 (301)
T ss_dssp EEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBC-SSCBCCCEEEEETTC--CTTCCCEEE--CCCSSCCB
T ss_pred EEEEcCCCCeEEeCC---CCChhhccccEEEECCEEEEEcCCC-CCccCceEEEEECCC--CCCCeeEEC--CCCCCCcc
Confidence 456899999999987 6788999999999999999999986 346788999999988 67 9988 67889999
Q ss_pred ceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceE
Q 048754 360 GHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDT 439 (625)
Q Consensus 360 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 439 (625)
+|+++++ +++||++||......++++++||+.++ +|+.++.+ |.+|.+|+++.+ +++||++||.... ...+++
T Consensus 105 ~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~-~~~~~~ 177 (301)
T 2vpj_A 105 LAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNID--QWSMLGDM--QTAREGAGLVVA-SGVIYCLGGYDGL-NILNSV 177 (301)
T ss_dssp SCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTT--EEEEEEEC--SSCCBSCEEEEE-TTEEEEECCBCSS-CBCCCE
T ss_pred ceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCC--eEEECCCC--CCCcccceEEEE-CCEEEEECCCCCC-cccceE
Confidence 9999988 568999999987777899999999999 99999876 889999999888 5699999997654 378899
Q ss_pred EEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcC
Q 048754 440 YLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVG 519 (625)
Q Consensus 440 ~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~ 519 (625)
++||+.+.+ |+.++. +|.+|..|+++++++ +||++||...... .+++++||+. +.+|+.+..+
T Consensus 178 ~~~d~~~~~--W~~~~~--~p~~r~~~~~~~~~~-~i~v~GG~~~~~~----~~~v~~yd~~--~~~W~~~~~~------ 240 (301)
T 2vpj_A 178 EKYDPHTGH--WTNVTP--MATKRSGAGVALLND-HIYVVGGFDGTAH----LSSVEAYNIR--TDSWTTVTSM------ 240 (301)
T ss_dssp EEEETTTTE--EEEECC--CSSCCBSCEEEEETT-EEEEECCBCSSSB----CCCEEEEETT--TTEEEEECCC------
T ss_pred EEEeCCCCc--EEeCCC--CCcccccceEEEECC-EEEEEeCCCCCcc----cceEEEEeCC--CCcEEECCCC------
Confidence 999987766 999975 788999999999977 9999999876543 5899999999 6799999765
Q ss_pred CCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEEC
Q 048754 520 SQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVG 592 (625)
Q Consensus 520 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~ 592 (625)
|.+|..|+++.+ +++|||+||.+... ..+++++||+ .+++|+.+. .+|.+|.+|++++++
T Consensus 241 ------p~~r~~~~~~~~-~~~i~v~GG~~~~~-~~~~v~~yd~--~~~~W~~~~---~~~~~r~~~~~~~~~ 300 (301)
T 2vpj_A 241 ------TTPRCYVGATVL-RGRLYAIAGYDGNS-LLSSIECYDP--IIDSWEVVT---SMGTQRCDAGVCVLR 300 (301)
T ss_dssp ------SSCCBSCEEEEE-TTEEEEECCBCSSS-BEEEEEEEET--TTTEEEEEE---EEEEEEESCEEEEEE
T ss_pred ------CCcccceeEEEE-CCEEEEEcCcCCCc-ccccEEEEcC--CCCeEEEcC---CCCcccccceEEEeC
Confidence 788999999988 99999999976433 4689999999 789999995 678899999998874
No 12
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=4.1e-37 Score=306.88 Aligned_cols=262 Identities=19% Similarity=0.177 Sum_probs=217.8
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCC------CCCccccEEE
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCG------RQGLLNDVFV 388 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~------~~~~~~~~~~ 388 (625)
.+.||++|| +++++||+.+ ++|... ..+.|.+|.+|+++++ +++|||+||.. .....+++++
T Consensus 4 ~~~l~~~GG--------~~~~~yd~~~--~~W~~~-~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~ 71 (315)
T 4asc_A 4 QDLIFMISE--------EGAVAYDPAA--NECYCA-SLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQ 71 (315)
T ss_dssp EEEEEEEET--------TEEEEEETTT--TEEEEE-ECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEE
T ss_pred ceEEEEEcC--------CceEEECCCC--CeEecC-CCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEE
Confidence 467999999 4699999998 799863 2334678999998877 66899999962 1224567999
Q ss_pred EECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcC--CCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcc
Q 048754 389 LDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCT--DAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGH 466 (625)
Q Consensus 389 ~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~ 466 (625)
||+.++ +|+.++.+ |.+|.+|+++.+ ++++||+||.. .....++++++||+.+.+ |+.++. +|.+|.+|
T Consensus 72 ~d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~--~p~~r~~~ 142 (315)
T 4asc_A 72 FDHLDS--EWLGMPPL--PSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDP--LPYVVYGH 142 (315)
T ss_dssp EETTTT--EEEECCCB--SSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEECCC--CSSCCBSC
T ss_pred ecCCCC--eEEECCCC--CcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeECCC--CCCcccce
Confidence 999999 99999876 889999999988 66999999975 345678999999987765 999986 88899999
Q ss_pred eEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEe
Q 048754 467 SLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFG 546 (625)
Q Consensus 467 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G 546 (625)
+++++++ +||++||...... .++++++||+. +.+|+.++.+ |.+|..|+++.+ +++|||+|
T Consensus 143 ~~~~~~~-~iyv~GG~~~~~~---~~~~~~~yd~~--~~~W~~~~~~------------p~~r~~~~~~~~-~~~iyv~G 203 (315)
T 4asc_A 143 TVLSHMD-LVYVIGGKGSDRK---CLNKMCVYDPK--KFEWKELAPM------------QTARSLFGATVH-DGRIIVAA 203 (315)
T ss_dssp EEEEETT-EEEEECCBCTTSC---BCCCEEEEETT--TTEEEECCCC------------SSCCBSCEEEEE-TTEEEEEE
T ss_pred eEEEECC-EEEEEeCCCCCCc---ccceEEEEeCC--CCeEEECCCC------------CCchhceEEEEE-CCEEEEEe
Confidence 9999877 9999999854433 26999999999 6799999765 789999999988 89999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCC----C----CccCceEEEEcc
Q 048754 547 GSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGE----E----WVLNELHELCLA 618 (625)
Q Consensus 547 G~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~----~----~~~~d~~~~~~~ 618 (625)
|.+... ..+++++||+ .+++|+.+. .+|.+|.+|+++++++ +|||+||.+.. + ..++++|+||+.
T Consensus 204 G~~~~~-~~~~~~~yd~--~~~~W~~~~---~~p~~r~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~ 276 (315)
T 4asc_A 204 GVTDTG-LTSSAEVYSI--TDNKWAPFE---AFPQERSSLSLVSLVG-TLYAIGGFATLETESGELVPTELNDIWRYNEE 276 (315)
T ss_dssp EECSSS-EEEEEEEEET--TTTEEEEEC---CCSSCCBSCEEEEETT-EEEEEEEEEEEECTTSCEEEEEEEEEEEEETT
T ss_pred ccCCCC-ccceEEEEEC--CCCeEEECC---CCCCcccceeEEEECC-EEEEECCccccCcCCccccccccCcEEEecCC
Confidence 986543 3689999999 789999995 6788999999999875 99999998642 1 357999999999
Q ss_pred CCCCC
Q 048754 619 SKQDS 623 (625)
Q Consensus 619 ~~~~~ 623 (625)
++++.
T Consensus 277 ~~~W~ 281 (315)
T 4asc_A 277 EKKWE 281 (315)
T ss_dssp TTEEE
T ss_pred CChhh
Confidence 88764
No 13
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=1.5e-36 Score=332.58 Aligned_cols=287 Identities=16% Similarity=0.229 Sum_probs=228.9
Q ss_pred CCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcc-c---CCCCCCccceeEEEEc-CCEEEEEc
Q 048754 301 AVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVS-V---KSSPPGRWGHTLSSLN-GSWLVVFG 375 (625)
Q Consensus 301 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~-~---~~~p~~r~~~~~~~~~-~~~iyv~G 375 (625)
..|++|.++++ +++++|||+||... ..++++|+||+.+ ++|..+. . ..+|.+|.+|+++++. +++|||+|
T Consensus 384 ~~p~rr~g~~~-~~~~~iyv~GG~~~--~~~~~v~~yd~~~--~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~G 458 (695)
T 2zwa_A 384 CPINRKFGDVD-VAGNDVFYMGGSNP--YRVNEILQLSIHY--DKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIG 458 (695)
T ss_dssp CTTCCBSCEEE-ECSSCEEEECCBSS--SBCCCEEEEEECS--SCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEEC
T ss_pred CCCCCceeEEE-EECCEEEEECCCCC--CCcCcEEEEECCC--CeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEc
Confidence 56666776654 48999999999866 6789999999988 7999986 3 2478999999999984 66899999
Q ss_pred cCCCCC-ccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEc
Q 048754 376 GCGRQG-LLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREI 454 (625)
Q Consensus 376 G~~~~~-~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 454 (625)
|..... .++++|+||+.++ +|+.++.+ |.+|.+|+++.+.+++|||+||..... ++++||+.+++ |+.+
T Consensus 459 G~~~~~~~~~dv~~yd~~t~--~W~~~~~~--p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~--W~~~ 528 (695)
T 2zwa_A 459 GRKAPHQGLSDNWIFDMKTR--EWSMIKSL--SHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEI--FKDV 528 (695)
T ss_dssp CBSSTTCBCCCCEEEETTTT--EEEECCCC--SBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTE--EEEC
T ss_pred CCCCCCCccccEEEEeCCCC--cEEECCCC--CCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCc--eEEc
Confidence 997654 7899999999999 99999877 889999999887566999999986554 89999987766 9999
Q ss_pred CCC-CCCCCCCcceEEEEC-C-cEEEEEcCCcCCCCcccccCceEEEEcCCCCCc------eeEeeeccccCcCCCCCCC
Q 048754 455 PTS-WSPPSRLGHSLSVYG-R-TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQ------WKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 455 ~~~-~~p~~r~~~~~~~~~-~-~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~------W~~~~~~~~~~~~~~~~~~ 525 (625)
+.. .+|.+|++|++++++ + ++||++||....+. ..++++++||+. +.+ |+.+..+ +
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~--~~~~~v~~yd~~--~~~w~~~~~W~~~~~~-----------p 593 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQT--TVSDKAIIFKYD--AENATEPITVIKKLQH-----------P 593 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSS--CBCCEEEEEEEC--TTCSSCCEEEEEEEEC-----------G
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCC--eeeCcEEEEEcc--CCccccceEEEEcCCC-----------C
Confidence 853 378899999987865 2 49999999865541 236899999999 556 8988764 2
Q ss_pred CCCccceEEEEecCCEEEEEecCCCCC--CCCCcEEEEeCCCCCCCeEEEcCCCC----CCCCCCcceEEEECCcEEEEE
Q 048754 526 PPPRLDHVAVSMPCGRIIIFGGSIAGL--HSPSQLFLLDPSEEKPSWRILNVPGQ----PPKFAWGHSTCVVGGTRVLVL 599 (625)
Q Consensus 526 p~~r~~~~~~~~~~~~l~v~GG~~~~~--~~~~~v~~~d~~~~~~~W~~v~~~~~----~p~~r~~~~~~~~~~~~i~i~ 599 (625)
+.+|.+|+++.+.+++|||+||.+... ...+++++||+ .+++|+.+..+.. ++..+.+|+++++.+++|||+
T Consensus 594 ~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~--~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~ 671 (695)
T 2zwa_A 594 LFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDP--LSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHII 671 (695)
T ss_dssp GGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEET--TTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEE
T ss_pred CCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEEC--CCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEE
Confidence 588999999998339999999986543 35789999999 7899997653321 123677899888877799999
Q ss_pred cCcC---CCCCccCceEEEEccC
Q 048754 600 GGHT---GEEWVLNELHELCLAS 619 (625)
Q Consensus 600 GG~~---~~~~~~~d~~~~~~~~ 619 (625)
||.. +.+.+.|++|.|++.+
T Consensus 672 GGg~~cfsfGt~~n~i~~ldl~~ 694 (695)
T 2zwa_A 672 GGGATCYGFGSVTNVGLKLIAIA 694 (695)
T ss_dssp CCEEECTTSCEEECCCEEEEECC
T ss_pred eCCccCcCccccccceEEEEEEc
Confidence 9954 3355688999999865
No 14
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=4.9e-36 Score=299.55 Aligned_cols=270 Identities=17% Similarity=0.228 Sum_probs=219.4
Q ss_pred CCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCC----
Q 048754 304 PSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGR---- 379 (625)
Q Consensus 304 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~---- 379 (625)
.+|.++.. .+.||++||. ++++||+.+ ++|.... .+.|.+|.+|+++.+ +++||++||...
T Consensus 7 ~~r~~~~~---~~~i~~~GG~--------~~~~yd~~~--~~W~~~~-~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~ 71 (318)
T 2woz_A 7 IPRHGMFV---KDLILLVNDT--------AAVAYDPME--NECYLTA-LAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEEN 71 (318)
T ss_dssp SCCCCCSE---EEEEEEECSS--------EEEEEETTT--TEEEEEE-ECTTSCSSEEEEECS-SSCEEEEESSCC----
T ss_pred ccccccee---cchhhhcccc--------ceEEECCCC--Cceeccc-CCccCCccceEEEEE-CCEEEEECCcccCccc
Confidence 34555432 4689999994 379999988 7999742 344678998888876 568999999631
Q ss_pred --CCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCC-CCceeceEEEEecCCCCCceEEcCC
Q 048754 380 --QGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTD-AGVLLSDTYLLDLTTDKPMWREIPT 456 (625)
Q Consensus 380 --~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~~~~~~~W~~~~~ 456 (625)
....+++++||+.++ +|..++.+ |.+|..|+++.+ ++++||+||... ....++++++||+.+.+ |+.++.
T Consensus 72 ~~~~~~~~~~~~d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~ 144 (318)
T 2woz_A 72 KDQPLQSYFFQLDNVSS--EWVGLPPL--PSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKN 144 (318)
T ss_dssp ---CCCBEEEEEETTTT--EEEECSCB--SSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECC
T ss_pred cCCCccccEEEEeCCCC--cEEECCCC--CccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCC--EeECCC
Confidence 123456999999999 99999877 889999999888 569999999863 45678999999987765 999985
Q ss_pred CCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEE
Q 048754 457 SWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVS 536 (625)
Q Consensus 457 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~ 536 (625)
+|.+|.+|+++++++ +||++||...... .++++++||+. +.+|+.+..+ |.+|..|+++.
T Consensus 145 --~p~~r~~~~~~~~~~-~iyv~GG~~~~~~---~~~~~~~yd~~--~~~W~~~~~~------------p~~r~~~~~~~ 204 (318)
T 2woz_A 145 --LPIKVYGHNVISHNG-MIYCLGGKTDDKK---CTNRVFIYNPK--KGDWKDLAPM------------KTPRSMFGVAI 204 (318)
T ss_dssp --CSSCEESCEEEEETT-EEEEECCEESSSC---BCCCEEEEETT--TTEEEEECCC------------SSCCBSCEEEE
T ss_pred --CCCcccccEEEEECC-EEEEEcCCCCCCC---ccceEEEEcCC--CCEEEECCCC------------CCCcccceEEE
Confidence 888999999999876 9999999865433 26899999999 6799999765 78999999988
Q ss_pred ecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCC--------CCc
Q 048754 537 MPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGE--------EWV 608 (625)
Q Consensus 537 ~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~--------~~~ 608 (625)
+ +++|||+||.+... ..+++++||+ .+++|+.+. .+|.+|.+|+++++++ +|||+||.+.. ...
T Consensus 205 ~-~~~iyv~GG~~~~~-~~~~~~~yd~--~~~~W~~~~---~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~ 276 (318)
T 2woz_A 205 H-KGKIVIAGGVTEDG-LSASVEAFDL--KTNKWEVMT---EFPQERSSISLVSLAG-SLYAIGGFAMIQLESKEFAPTE 276 (318)
T ss_dssp E-TTEEEEEEEEETTE-EEEEEEEEET--TTCCEEECC---CCSSCCBSCEEEEETT-EEEEECCBCCBC----CCBCCB
T ss_pred E-CCEEEEEcCcCCCC-ccceEEEEEC--CCCeEEECC---CCCCcccceEEEEECC-EEEEECCeeccCCCCceeccce
Confidence 8 89999999986533 3679999999 789999984 6788999999998874 99999998753 134
Q ss_pred cCceEEEEccCCCCC
Q 048754 609 LNELHELCLASKQDS 623 (625)
Q Consensus 609 ~~d~~~~~~~~~~~~ 623 (625)
.+|+|+||+.++++.
T Consensus 277 ~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 277 VNDIWKYEDDKKEWA 291 (318)
T ss_dssp CCCEEEEETTTTEEE
T ss_pred eeeEEEEeCCCCEeh
Confidence 799999999988764
No 15
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=3.4e-34 Score=291.30 Aligned_cols=262 Identities=18% Similarity=0.238 Sum_probs=205.1
Q ss_pred eeeeecc--cCeeEEeeecCCCC-CCCcccceEEECCEEEEEcccCC----CCCCCCCeEEEeccCCCCceEEcccCCCC
Q 048754 283 RELTTLE--AVCWRKFTVRGAVE-PSRCNFSACAAGNRLVLFGGEGV----NMQPMDDTFVLNLDAANPEWRRVSVKSSP 355 (625)
Q Consensus 283 ~~~~~~~--~~~W~~~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~----~~~~~~~~~~~~~~~~~~~W~~~~~~~~p 355 (625)
...|++. +.+|..++ .+| .+|.+|++++++++|||+||... ....++++|+||+.+ ++|+++...+ |
T Consensus 33 ~~~~d~~~~~~~W~~~~---~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~--~~W~~~~~~~-p 106 (357)
T 2uvk_A 33 WYKLDTQAKDKKWTALA---AFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT--NSWVKLMSHA-P 106 (357)
T ss_dssp EEEEETTSSSCCEEECC---CCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTT--TEEEECSCCC-S
T ss_pred EEEEccccCCCCeeECC---CCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCC--CcEEECCCCC-C
Confidence 4567776 48999987 577 78999999999999999999822 335688999999998 7999985322 5
Q ss_pred CCccceeEEEEcCCEEEEEccCCCC----------------------------------CccccEEEEECCCCCCEEEEc
Q 048754 356 PGRWGHTLSSLNGSWLVVFGGCGRQ----------------------------------GLLNDVFVLDLDAKQPTWIEV 401 (625)
Q Consensus 356 ~~r~~~~~~~~~~~~iyv~GG~~~~----------------------------------~~~~~~~~~d~~t~~~~W~~~ 401 (625)
.+|.+|+++++ +++|||+||.... ..++++++||+.++ +|+.+
T Consensus 107 ~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~ 183 (357)
T 2uvk_A 107 MGMAGHVTFVH-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQ--QWSYA 183 (357)
T ss_dssp SCCSSEEEEEE-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTT--EEEEE
T ss_pred cccccceEEEE-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCC--cEEEC
Confidence 88999999886 6699999998643 24689999999999 99999
Q ss_pred CCCCCCCCC-ccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEc
Q 048754 402 SGGAPPLPR-SWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFG 480 (625)
Q Consensus 402 ~~~~~p~~r-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~G 480 (625)
+.+ |.+| .+|+++.+ +++|||+||....+..++++++||++..+.+|+.++....|.+|.+|+++++++ +||++|
T Consensus 184 ~~~--p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~iyv~G 259 (357)
T 2uvk_A 184 GES--PWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND-SLIFAG 259 (357)
T ss_dssp EEC--SSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT-EEEEEC
T ss_pred CCC--CCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC-EEEEEc
Confidence 765 5554 44888777 669999999876666788999999855556699998643445577888888877 999999
Q ss_pred CCcCCCC-------------cccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEec
Q 048754 481 GLAKSGH-------------LRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGG 547 (625)
Q Consensus 481 G~~~~~~-------------~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG 547 (625)
|....+. ......++++||+. +.+|+.+..+ |.+|.+|+++.+ +++|||+||
T Consensus 260 G~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~------------p~~r~~~~~~~~-~~~i~v~GG 324 (357)
T 2uvk_A 260 GAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWH--NGKWDKSGEL------------SQGRAYGVSLPW-NNSLLIIGG 324 (357)
T ss_dssp CEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEEC------------SSCCBSSEEEEE-TTEEEEEEE
T ss_pred CccccCCcccccccceeccccccceeeEEEEecC--CCceeeCCCC------------CCCcccceeEEe-CCEEEEEee
Confidence 9754321 01123688999999 6799999876 789999999888 999999999
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 548 SIAGLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 548 ~~~~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
.+......+++++|++ ++++|....
T Consensus 325 ~~~~~~~~~~v~~l~~--~~~~~~~~~ 349 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITV--KDNKVTVQN 349 (357)
T ss_dssp ECGGGCEEEEEEEEEC---CCSCEEEC
T ss_pred eCCCCCEeeeEEEEEE--cCcEeEeee
Confidence 8766555799999999 789998875
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.97 E-value=2.8e-30 Score=282.92 Aligned_cols=240 Identities=18% Similarity=0.251 Sum_probs=195.8
Q ss_pred CCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcC-C---CCCCCCCccceEEEEc-CCEEEEE
Q 048754 352 KSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVS-G---GAPPLPRSWHSSCIIE-GSKLVVS 426 (625)
Q Consensus 352 ~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~-~---~~~p~~r~~~~~~~~~-~~~iyv~ 426 (625)
+..|+.|++++++ + +++|||+||.+. ..++++|+||+.++ +|..++ + ...|.+|.+|+++.+. ++++||+
T Consensus 383 ~~~p~rr~g~~~~-~-~~~iyv~GG~~~-~~~~~v~~yd~~~~--~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~ 457 (695)
T 2zwa_A 383 ECPINRKFGDVDV-A-GNDVFYMGGSNP-YRVNEILQLSIHYD--KIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLI 457 (695)
T ss_dssp CCTTCCBSCEEEE-C-SSCEEEECCBSS-SBCCCEEEEEECSS--CEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEE
T ss_pred CCCCCCceeEEEE-E-CCEEEEECCCCC-CCcCcEEEEECCCC--eEEEeccCCCCCCCCccccceEEEEEccCCEEEEE
Confidence 4456667665544 4 668999999977 77899999999999 999887 4 2358899999999994 5699999
Q ss_pred cCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCc
Q 048754 427 GGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQ 506 (625)
Q Consensus 427 GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~ 506 (625)
||.......++++|+||+.+++ |+.++. +|.+|++|+++++.+++||++||..... ++++||+. +.+
T Consensus 458 GG~~~~~~~~~dv~~yd~~t~~--W~~~~~--~p~~R~~h~~~~~~~~~iyv~GG~~~~~-------~v~~yd~~--t~~ 524 (695)
T 2zwa_A 458 GGRKAPHQGLSDNWIFDMKTRE--WSMIKS--LSHTRFRHSACSLPDGNVLILGGVTEGP-------AMLLYNVT--EEI 524 (695)
T ss_dssp CCBSSTTCBCCCCEEEETTTTE--EEECCC--CSBCCBSCEEEECTTSCEEEECCBCSSC-------SEEEEETT--TTE
T ss_pred cCCCCCCCccccEEEEeCCCCc--EEECCC--CCCCcccceEEEEcCCEEEEECCCCCCC-------CEEEEECC--CCc
Confidence 9988766678999999987765 999976 8899999999997455999999986532 89999999 679
Q ss_pred eeEeeeccccCcCCCCCCCCCCccceEEEEec-C-CEEEEEecCCCCC-CCCCcEEEEeCCCCCCC------eEEEcCCC
Q 048754 507 WKQLECNAFTGVGSQSAVVPPPRLDHVAVSMP-C-GRIIIFGGSIAGL-HSPSQLFLLDPSEEKPS------WRILNVPG 577 (625)
Q Consensus 507 W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~-~~l~v~GG~~~~~-~~~~~v~~~d~~~~~~~------W~~v~~~~ 577 (625)
|+.+... +..|.+|.+|+++++. + ++|||+||..... ...+++|+||+ .+++ |+.+..
T Consensus 525 W~~~~~~---------g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~--~~~~w~~~~~W~~~~~-- 591 (695)
T 2zwa_A 525 FKDVTPK---------DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKY--DAENATEPITVIKKLQ-- 591 (695)
T ss_dssp EEECCCS---------SGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEE--CTTCSSCCEEEEEEEE--
T ss_pred eEEccCC---------CCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEc--cCCccccceEEEEcCC--
Confidence 9999864 3468899999977762 2 8999999986543 45799999999 6777 888863
Q ss_pred CCCCCCCcceEEEECCcEEEEEcCcCCCC--CccCceEEEEccCCCC
Q 048754 578 QPPKFAWGHSTCVVGGTRVLVLGGHTGEE--WVLNELHELCLASKQD 622 (625)
Q Consensus 578 ~~p~~r~~~~~~~~~~~~i~i~GG~~~~~--~~~~d~~~~~~~~~~~ 622 (625)
.++.+|.+|+++++++++|||+||.+... ...+++++||+.++++
T Consensus 592 ~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 592 HPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp CGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred CCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 23578999999999856999999987654 3589999999998765
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.97 E-value=4.3e-30 Score=281.72 Aligned_cols=306 Identities=14% Similarity=0.109 Sum_probs=220.5
Q ss_pred eeeeecccCeeEEeeecCCCCCCCcccceEEE--CCEEEEEcccCCCC-----CCCCCeEEEeccCCCCceEEcccCCCC
Q 048754 283 RELTTLEAVCWRKFTVRGAVEPSRCNFSACAA--GNRLVLFGGEGVNM-----QPMDDTFVLNLDAANPEWRRVSVKSSP 355 (625)
Q Consensus 283 ~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~-----~~~~~~~~~~~~~~~~~W~~~~~~~~p 355 (625)
...|++..++|..+. ++ |+..++++++ +++||++||..... ...+++++||+.+ ++|+.+ ..+|
T Consensus 168 ~~~~dp~~~~W~~~~---~~--P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t--~~w~~~--~~~~ 238 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTI---DL--PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST--GIVSDR--TVTV 238 (656)
T ss_dssp CCCCCTTSCEEEEEE---EC--SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT--CCBCCC--EEEE
T ss_pred cccCCCCCCeeeeec---cC--CCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCC--CcEEeC--cccC
Confidence 567899999999876 23 3455666666 99999999975431 1244789999988 799977 3455
Q ss_pred CCccce--eEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCC
Q 048754 356 PGRWGH--TLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAG 433 (625)
Q Consensus 356 ~~r~~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~ 433 (625)
.+|..| +++++.+++||++||.... ++++||+.++ +|.+++.+ |.+|.+|+++.+.++++||+||.....
T Consensus 239 ~~~~~~~~~~~~~~~g~lyv~GG~~~~----~v~~yd~~t~--~W~~~~~~--~~~R~~~s~~~~~dg~iyv~GG~~~~~ 310 (656)
T 1k3i_A 239 TKHDMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSSD--SWIPGPDM--QVARGYQSSATMSDGRVFTIGGSWSGG 310 (656)
T ss_dssp CSCCCSSCEEEECTTSCEEEECSSSTT----CEEEEEGGGT--EEEECCCC--SSCCSSCEEEECTTSCEEEECCCCCSS
T ss_pred CCCCCccccccCCCCCCEEEeCCCCCC----ceEEecCcCC--ceeECCCC--CccccccceEEecCCeEEEEeCcccCC
Confidence 555444 4555567789999997643 7999999999 99999877 889999999888566899999965555
Q ss_pred ceeceEEEEecCCCCCceEEcCCC---CCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEe
Q 048754 434 VLLSDTYLLDLTTDKPMWREIPTS---WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQL 510 (625)
Q Consensus 434 ~~~~~~~~~d~~~~~~~W~~~~~~---~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~ 510 (625)
..++++++||+.+++ |+.++.. +++..+. ++++.. ++++|++||.+.........++++.||+. +..|...
T Consensus 311 ~~~~~~e~yd~~t~~--W~~~~~~~~~p~~~~~~-~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~--~~~w~~~ 384 (656)
T 1k3i_A 311 VFEKNGEVYSPSSKT--WTSLPNAKVNPMLTADK-QGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTS--GSGDVKS 384 (656)
T ss_dssp SCCCCEEEEETTTTE--EEEETTSCSGGGCCCCT-TGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECS--TTCEEEE
T ss_pred cccccceEeCCCCCc--ceeCCCccccccccccc-cceeec-CCceEEEECCCCcEEEecCccceeeeecC--Ccceeec
Confidence 578899999987766 9998532 1333333 233334 44999999986532211235789999998 5577654
Q ss_pred eeccccCcCCCCCC---CCCCccceEEEE--ecCCEEEEEecCCC--CCCCCC---cEEEEeCCCCCCCeEEEcCCCCCC
Q 048754 511 ECNAFTGVGSQSAV---VPPPRLDHVAVS--MPCGRIIIFGGSIA--GLHSPS---QLFLLDPSEEKPSWRILNVPGQPP 580 (625)
Q Consensus 511 ~~~~~~~~~~~~~~---~p~~r~~~~~~~--~~~~~l~v~GG~~~--~~~~~~---~v~~~d~~~~~~~W~~v~~~~~~p 580 (625)
.... .. .++++..++++. ..+++|||+||... +....+ .+++||+ .+++|..+. .+.+|
T Consensus 385 ~~~~--------~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~-~~~mp 453 (656)
T 1k3i_A 385 AGKR--------QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP--GTSPNTVFA-SNGLY 453 (656)
T ss_dssp EEEC--------EETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST--TSCCEEEEC-TTCCS
T ss_pred CCcc--------ccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCC--CCCCeeEEc-cCCCC
Confidence 3321 00 022344556654 23899999999743 222244 7889999 789999886 24788
Q ss_pred CCCCcceEEEECCcEEEEEcCcCCC-----CCccCceEEEEccCCCC
Q 048754 581 KFAWGHSTCVVGGTRVLVLGGHTGE-----EWVLNELHELCLASKQD 622 (625)
Q Consensus 581 ~~r~~~~~~~~~~~~i~i~GG~~~~-----~~~~~d~~~~~~~~~~~ 622 (625)
.+|..|+++++.+++|||+||.+.. ...++++++||+.++++
T Consensus 454 ~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W 500 (656)
T 1k3i_A 454 FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF 500 (656)
T ss_dssp SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce
Confidence 9999999999977899999997632 23579999999988764
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.96 E-value=3e-28 Score=267.06 Aligned_cols=300 Identities=14% Similarity=0.090 Sum_probs=213.6
Q ss_pred eeeeecccCeeEEeeecCCCCCCCcccc--eE-EECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCcc
Q 048754 283 RELTTLEAVCWRKFTVRGAVEPSRCNFS--AC-AAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRW 359 (625)
Q Consensus 283 ~~~~~~~~~~W~~~~~~~~~p~~r~~~~--~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~ 359 (625)
..+||+.+++|..++ .+|.+|..|+ ++ +.+++||++||+... ++++||+.+ ++|.++ +.+|.+|.
T Consensus 221 ~~~yd~~t~~w~~~~---~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t--~~W~~~--~~~~~~R~ 288 (656)
T 1k3i_A 221 TSSWDPSTGIVSDRT---VTVTKHDMFCPGISMDGNGQIVVTGGNDAK-----KTSLYDSSS--DSWIPG--PDMQVARG 288 (656)
T ss_dssp EEEECTTTCCBCCCE---EEECSCCCSSCEEEECTTSCEEEECSSSTT-----CEEEEEGGG--TEEEEC--CCCSSCCS
T ss_pred EEEEeCCCCcEEeCc---ccCCCCCCccccccCCCCCCEEEeCCCCCC-----ceEEecCcC--CceeEC--CCCCcccc
Confidence 467899999999886 4555666654 33 358999999997543 699999998 799987 67899999
Q ss_pred ceeEEEEcCCEEEEEccC-CCCCccccEEEEECCCCCCEEEEcCCC---CCCCCCccceEEEEcCCEEEEEcCcCCCC--
Q 048754 360 GHTLSSLNGSWLVVFGGC-GRQGLLNDVFVLDLDAKQPTWIEVSGG---APPLPRSWHSSCIIEGSKLVVSGGCTDAG-- 433 (625)
Q Consensus 360 ~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~~d~~t~~~~W~~~~~~---~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-- 433 (625)
+|+++++.+++|||+||. .+...++++++||+.++ +|+.++.. +.+..|. +++ ...++++|++||.+...
T Consensus 289 ~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~--~W~~~~~~~~~p~~~~~~-~~~-~~~~~~iyv~Gg~~g~~~~ 364 (656)
T 1k3i_A 289 YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK--TWTSLPNAKVNPMLTADK-QGL-YRSDNHAWLFGWKKGSVFQ 364 (656)
T ss_dssp SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT--EEEEETTSCSGGGCCCCT-TGG-GTTTCSCCEEECGGGCEEE
T ss_pred ccceEEecCCeEEEEeCcccCCcccccceEeCCCCC--cceeCCCccccccccccc-cce-eecCCceEEEECCCCcEEE
Confidence 999998856689999994 55557889999999999 99998532 1133333 233 33466899999975321
Q ss_pred -ceeceEEEEecCCCCCceEEcCCC-CC----CCCCCcceEEEE--CCcEEEEEcCCcCCCCcccccC---ceEEEEcCC
Q 048754 434 -VLLSDTYLLDLTTDKPMWREIPTS-WS----PPSRLGHSLSVY--GRTKVLMFGGLAKSGHLRLRSG---ESYTIDLGD 502 (625)
Q Consensus 434 -~~~~~~~~~d~~~~~~~W~~~~~~-~~----p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~---~~~~~d~~~ 502 (625)
...++++.||+.++. |...... .. ++++..++++++ .+++||++||....... ..++ .+++||+.
T Consensus 365 ~~~~~~v~~yd~~~~~--w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~-~~~~~~~~v~~yd~~- 440 (656)
T 1k3i_A 365 AGPSTAMNWYYTSGSG--DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS-DATTNAHIITLGEPG- 440 (656)
T ss_dssp CCSSSEEEEEECSTTC--EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS-BCCCCEEEEECCSTT-
T ss_pred ecCccceeeeecCCcc--eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC-CcCCcceEEEcCCCC-
Confidence 135789999987765 7653211 11 223445555542 24599999997532110 1134 67888988
Q ss_pred CCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC-----CCCCCcEEEEeCCCCCCCeEEEcCCC
Q 048754 503 EEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG-----LHSPSQLFLLDPSEEKPSWRILNVPG 577 (625)
Q Consensus 503 ~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~-----~~~~~~v~~~d~~~~~~~W~~v~~~~ 577 (625)
+.+|..+.. +.+|.+|..|+++++.+++|||+||.+.+ .....++++||+ .+++|+.+.
T Consensus 441 -~~~W~~~~~----------~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp--~t~~W~~~~--- 504 (656)
T 1k3i_A 441 -TSPNTVFAS----------NGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVP--EQDTFYKQN--- 504 (656)
T ss_dssp -SCCEEEECT----------TCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEG--GGTEEEECC---
T ss_pred -CCCeeEEcc----------CCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcC--CCCceeecC---
Confidence 679998861 12488999999988889999999997632 233689999999 789999874
Q ss_pred CCCCCCCcceEEEE-CCcEEEEEcCcCCCCC--ccCceEEEEcc
Q 048754 578 QPPKFAWGHSTCVV-GGTRVLVLGGHTGEEW--VLNELHELCLA 618 (625)
Q Consensus 578 ~~p~~r~~~~~~~~-~~~~i~i~GG~~~~~~--~~~d~~~~~~~ 618 (625)
.+|.+|.+|+++++ .+++|||+||....+. -.-++.+|...
T Consensus 505 ~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~~~~~~~~~e~~~Pp 548 (656)
T 1k3i_A 505 PNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPN 548 (656)
T ss_dssp CCSSCCCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECG
T ss_pred CCCCccccccHhhcCCCcEEEecCCCCCCCCCCCeeEEEEEeCh
Confidence 67889999997766 5679999999632211 13455666643
No 19
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.78 E-value=6.5e-19 Score=166.07 Aligned_cols=164 Identities=18% Similarity=0.267 Sum_probs=132.0
Q ss_pred EEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEEEEee
Q 048754 57 FVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFKK 136 (625)
Q Consensus 57 i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 136 (625)
|+++|. +|+|+++|++|++++||+++|++|++...+.. +.........+.+.+..+..+..|.+.+++
T Consensus 2 i~i~D~---~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 69 (227)
T 3ewk_A 2 VSITDL---QGRILYANDNFCAVSRYGREELVGQDHRIVNS---------GYHGKAYIRDMWRTISRGNIWQGEFCNRRK 69 (227)
T ss_dssp EEEEET---TCBEEEECHHHHHHTTCCHHHHTTSBGGGGCC---------SCSCHHHHHHHHHHHTTTCCEEEEEEEECS
T ss_pred EEEECC---CCcEEehHHHHHHHHCcCHHHHcCCCHHHcCC---------CCCCHHHHHHHHHHHHcCCeEEEEEEEEcC
Confidence 678899 99999999999999999999999998876643 234556667777888888999999999999
Q ss_pred cCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCcchhhhhhhhccccccccccccCCCCCCcccccccccccCc
Q 048754 137 DGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYDQSAQYFSGGHSPLSQHQDICGILQLS 216 (625)
Q Consensus 137 dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~ 216 (625)
||+.+|+.+++.|+.+.+|.+.+++++.+|||++|++|+.. +.+++ ..........+.|.+..++++|+++++++||+
T Consensus 70 dG~~~~~~~~~~p~~d~~g~~~~~~~~~~DIT~~k~~e~~l-~~~~~-~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~ 147 (227)
T 3ewk_A 70 DGTRYWVDSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQL-ARLKQ-AMDANSEMILLTDRAGRIIYANPALCRFSGMA 147 (227)
T ss_dssp SSCEEEEEEEEEEEECSSSCEEEEEEEEEECTTTTHHHHHH-HHHHH-HHHTCCSEEEEECTTSCEEEECHHHHHHHTCC
T ss_pred CCCEEeeeeEEEEEEcCCCCEEEEEEEEEehhhHHHHHHHH-HHHHH-HHhcCcCeEEEEcCCCcEEEEchHHHHHhCCC
Confidence 99999999999999999999999999999999999876521 11111 11222223334477777889999999999999
Q ss_pred -hhHHHHhhhcccCchhhh
Q 048754 217 -DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 217 -~e~~~~~~~~~~~~~~~~ 234 (625)
+|++|..+..+.++.+..
T Consensus 148 ~~e~~g~~~~~l~~~~~~~ 166 (227)
T 3ewk_A 148 EGELLGQSPSILDSPLADQ 166 (227)
T ss_dssp THHHHSSCGGGGBCTTSCH
T ss_pred HHHHcCCChhhccCCCCCH
Confidence 899988887777765543
No 20
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.64 E-value=1.5e-15 Score=127.07 Aligned_cols=115 Identities=24% Similarity=0.386 Sum_probs=98.7
Q ss_pred ecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHH
Q 048754 43 LKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122 (625)
Q Consensus 43 ~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (625)
+.+.+++. ++++|+++|. +|+|+++|++|++++||+++|++|++...+.. +.........+.+.+.
T Consensus 6 ~~~~~~~~--~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~---------~~~~~~~~~~~~~~~~ 71 (120)
T 2gj3_A 6 IFRQTVEH--APIAISITDL---KANILYANRAFRTITGYGSEEVLGKNESILSN---------GTTPRLVYQALWGRLA 71 (120)
T ss_dssp HHHHHHHH--CSSEEEEECT---TCBEEEECHHHHHHHCCCTTGGGGCBGGGGCC---------TTSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCeEEEECC---CCCEEeehHHHHHHHCcCHHHHcCCCHHHcCC---------CCCCHHHHHHHHHHHH
Confidence 34455555 8999999999 99999999999999999999999998777743 2334445566777778
Q ss_pred hCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeeccc
Q 048754 123 EGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKI 171 (625)
Q Consensus 123 ~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~ 171 (625)
.+..+..+.+.+++||+.+|+.+.+.|+.+.+|.+.+++++.+|||++|
T Consensus 72 ~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 72 QKKPWSGVLVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp TTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSCC
T ss_pred cCCCEEEEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCcccC
Confidence 8888999999999999999999999999999999999999999999875
No 21
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.63 E-value=8e-15 Score=120.26 Aligned_cols=108 Identities=44% Similarity=0.745 Sum_probs=94.5
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
.+++|+++|..+.+|+|+++|++|++++||+++|++|++...+.. |.........+++.+..++.+..+++
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~e~~ 72 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQG---------EGTDPKEVQKIRDAIKKGEACSVRLL 72 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCC---------TTCCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCC---------CCCCHHHHHHHHHHHHcCCcEEEEEE
Confidence 578999999533379999999999999999999999998776643 34455667788888888999999999
Q ss_pred EEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeec
Q 048754 133 NFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEA 169 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~ 169 (625)
.+++||+.+|+.+++.|+.+++|.+.+++++.+|||+
T Consensus 73 ~~~kdG~~~~~~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 73 NYRKDGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred EEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 9999999999999999999999999999999999995
No 22
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.58 E-value=1.7e-14 Score=122.86 Aligned_cols=111 Identities=36% Similarity=0.602 Sum_probs=94.7
Q ss_pred CCCCeeEEEecCCCCCC---CEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcce
Q 048754 51 PTTPTSFVVADAFDPDF---PIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEF 127 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g---~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (625)
+.++++|+++|. +| +|+++|++|++++||+++|++|++...+.. |.........+.+.+..+..+
T Consensus 6 ~~~~~~i~~~d~---~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~ 73 (132)
T 2pr5_A 6 DHVRVGVVITDP---ALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQG---------KHTDPAEVDNIRTALQNKEPV 73 (132)
T ss_dssp CCCCCEEEEECT---TSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCC---------TTCCHHHHHHHHHHHHHTCCE
T ss_pred hcCCCcEEEEeC---CCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCC---------CCCCHHHHHHHHHHHHcCCCe
Confidence 448999999998 76 999999999999999999999998766643 334455556677777788888
Q ss_pred EEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 128 QGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 128 ~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
..+.+.+++||+.+|+.+.+.|+.+.+ +.+++++.+|||++|++|+
T Consensus 74 ~~e~~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~ 119 (132)
T 2pr5_A 74 TVQIQNYKKDGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEK 119 (132)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHH
T ss_pred EEEEEEEecCCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHH
Confidence 889999999999999999999998765 7889999999999998766
No 23
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.57 E-value=1.9e-14 Score=120.42 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=93.1
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHH-hCcceEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE-EGIEFQG 129 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 129 (625)
+++++.|++.|. +|+++++|+++++++||+++|++|++..++. ||++.+.....+.+.+. .+..+..
T Consensus 9 e~~~d~i~~~d~---~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i---------~p~d~~~~~~~~~~~~~~~~~~~~~ 76 (121)
T 3f1p_B 9 CQPTRFISRHNI---EGIFTFVDHRCVATVGYQPQELLGKNIVEFC---------HPEDQQLLRDSFQQVVKLKGQVLSV 76 (121)
T ss_dssp CCCCEEEEEECT---TSBEEEECTTHHHHHSCCGGGTTTSBGGGGB---------CTTTHHHHHHHHHHHTTSTTCCEEE
T ss_pred cCCCceEEEECC---CceEEEECcchhhhhCCChHHHcCCCHHHeE---------CHHHHHHHHHHHHHHHhcCCCcccE
Confidence 448999999999 9999999999999999999999999877774 46566655666666664 4557888
Q ss_pred EEEEEeecCcceeEEEEEEEeeCC-CCCEEEEEEEEEeeecccc
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDD-DGTVTHIIGIQIFSEAKID 172 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~-~g~~~~~i~~~~Dit~~~~ 172 (625)
+++++++||+.+|+.+...|+.+. +|.+.+++++.+|||++|+
T Consensus 77 e~r~~~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 77 MFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp EEEEECTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred EEEEEecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEcccccC
Confidence 999999999999999999999987 7888999999999999875
No 24
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.54 E-value=2.2e-14 Score=119.21 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=95.1
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
+++.|++.|. +|+++++|+++++++||+++|++|++...+. ||++.+.....+.+.+..+..+..+++
T Consensus 8 ~~~~i~~~d~---~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~---------~p~d~~~~~~~~~~~~~~~~~~~~e~r 75 (117)
T 3f1p_A 8 SKTFLSEHSM---DMKFTYCDDRITELIGYHPEELLGRSAYEFY---------HALDSENMTKSHQNLCTKGQVVSGQYR 75 (117)
T ss_dssp GGEEEEEECT---TCBEEEECTHHHHHHCCCHHHHTTSBGGGGB---------CGGGHHHHHHHHHHHHHHSEEECCCEE
T ss_pred CccEEEEECC---CceEEEECcChhhhhCCCHHHHcCCchhheE---------CHHHHHHHHHHHHHHHhCCCeeeeEEE
Confidence 5688999999 9999999999999999999999998877764 466666666777777777888888999
Q ss_pred EEeecCcceeEEEEEEEeeCC-CCCEEEEEEEEEeeecccc
Q 048754 133 NFKKDGTPLVNRLRLAPIRDD-DGTVTHIIGIQIFSEAKID 172 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~-~g~~~~~i~~~~Dit~~~~ 172 (625)
++++||+.+|+.+...|+.+. +|.+.+++++.+|||++++
T Consensus 76 ~~~~dG~~~w~~~~~~~~~d~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 76 MLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EECTTSSEEEEEEEEEEEEETTTTEEEEEEEEEEECSCCBC
T ss_pred EEecCCCEEEEEEeeEEEECCCCCCceEEEEEeeecccccc
Confidence 999999999999999999987 7889999999999999875
No 25
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.52 E-value=2.8e-14 Score=128.24 Aligned_cols=121 Identities=25% Similarity=0.361 Sum_probs=105.2
Q ss_pred eeecccccccCCCCeeEEEecCCCCC---CCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHH
Q 048754 41 LSLKPGLLFYPTTPTSFVVADAFDPD---FPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEI 117 (625)
Q Consensus 41 ~~~~~~~~~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 117 (625)
+++.+.+++. ++++|+++|. + |+|+++|++|++++||++++++|++...+.. |.........+
T Consensus 6 ~~~~~~~~~~--~~~~i~~~d~---~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~---------~~~~~~~~~~~ 71 (176)
T 4hia_A 6 FEKIRAVFDR--SGVALTLVDM---SLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQR---------GDENAQARADI 71 (176)
T ss_dssp HHHHHHHHHH--CSSCCEEEET---TSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCC---------TTCCHHHHHHH
T ss_pred HHHHHHHHhc--CCCcEEEEec---CCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeC---------CCCCHHHHHHH
Confidence 3444556666 8999999999 7 9999999999999999999999999777753 44566667778
Q ss_pred HHHHHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 118 RRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 118 ~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.+.+..+..+..+.+..++||+.+|+.+.+.|+.+.+|.+.+++++.+|||++|++|+
T Consensus 72 ~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~ 129 (176)
T 4hia_A 72 RDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEE 129 (176)
T ss_dssp HHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHH
T ss_pred HHHHHcCCceEEEEEEEcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHH
Confidence 8888888899999999999999999999999999999999999999999999998765
No 26
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.51 E-value=5.5e-14 Score=121.40 Aligned_cols=113 Identities=13% Similarity=0.137 Sum_probs=97.5
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
+++++|.+|. ++.++++|+++.+++||+++++.+.....+ +.+||++.+.....+...+..+..+..|++
T Consensus 18 ~~~g~w~~d~---~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~-------~~ihpdD~~~~~~~~~~~~~~~~~~~~e~r 87 (142)
T 3mr0_A 18 ASAGLWDWNP---KTGAMYLSPHFKKIMGYEDHELPDEITGHR-------ESIHPDDRARVLAALKAHLEHRDTYDVEYR 87 (142)
T ss_dssp TTCEEEEECT---TTCCEEECHHHHHHTTCCGGGSCSEEC----------CCBCTTTHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCcEEEEEEc---CCCeEEECHHHHHHhCCCccccCCCHHHHH-------hhcCHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 8899999999 999999999999999999998766322111 125777777777778888888888999999
Q ss_pred EEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 133 NFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
++++||...|+.....++.+.+|.+..++|+++|||++|++|+
T Consensus 88 ~~~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~ 130 (142)
T 3mr0_A 88 VRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDED 130 (142)
T ss_dssp EECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHH
T ss_pred EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHH
Confidence 9999999999999999999999999999999999999998876
No 27
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.49 E-value=5.6e-14 Score=134.94 Aligned_cols=162 Identities=29% Similarity=0.405 Sum_probs=113.1
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (625)
.+.+++. ++++|+++|....+|+|+++|++|++++||++++++|++...+.+ |.........+...+..
T Consensus 65 ~~~i~~~--~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~---------~~~~~~~~~~~~~~l~~ 133 (258)
T 3p7n_A 65 VLDLIEA--SPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAG---------SGTEPWLTDKIRQGVRE 133 (258)
T ss_dssp HHHHHHT--CSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCC---------TTCCHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccC---------CCCchhHHHHHHHHHHc
Confidence 3444445 999999999722245699999999999999999999999877753 44566777778888888
Q ss_pred CcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCc-chhhhhhhhccccccccccc-cCCCC
Q 048754 124 GIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHV-SYPVFKENCNQQYDQSAQYF-SGGHS 201 (625)
Q Consensus 124 ~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~-~~~~~~~~~~~~~~~~~~~~-~~~~~ 201 (625)
+..+..+.+.+++||+.+|+.+.+.|+.+.+|.+.+++++++|||++|..+.. .....++.+.........++ ....+
T Consensus 134 ~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITerk~~~~e~~~~~~~~~l~~L~~r~~~i~~~~~~g 213 (258)
T 3p7n_A 134 HKPVLVEILNYKKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVDDDQPNMGMARRERAAEMLKTLSPRQLEVTTLVASG 213 (258)
T ss_dssp TCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCSEEEEEEEEEC-------CHHHHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEEEEEcCCCCEEEEeeEEEEEEcCCCCEEEEEEEeeecchhhhhhhHHHHHHHHHHHhhcCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999543321 11122222222221111111 00011
Q ss_pred CCcccccccccccCchh
Q 048754 202 PLSQHQDICGILQLSDE 218 (625)
Q Consensus 202 ~~~~n~~~~~~~g~~~e 218 (625)
..|..++.+++++..
T Consensus 214 --~~~~eia~~l~~s~~ 228 (258)
T 3p7n_A 214 --LRNKEVAARLGLSEK 228 (258)
T ss_dssp --CCHHHHHHHHTCCHH
T ss_pred --CCHHHHHHHHCcCHH
Confidence 367888888888833
No 28
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.49 E-value=1.4e-13 Score=129.28 Aligned_cols=127 Identities=21% Similarity=0.312 Sum_probs=112.5
Q ss_pred eEEecCCCCccccceeeecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccC
Q 048754 26 CSFEGGGGGGGDDTELSLKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRR 105 (625)
Q Consensus 26 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~ 105 (625)
....+.+++++.|+++++.+.+++. ++++|+++|. +|+|+++|++|++++||+++|++|++...+.+
T Consensus 95 ~~~~DIT~~k~~e~~l~~~~~~~~~--~~~~i~~~d~---~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~-------- 161 (227)
T 3ewk_A 95 SIRRDITAQKEAEAQLARLKQAMDA--NSEMILLTDR---AGRIIYANPALCRFSGMAEGELLGQSPSILDS-------- 161 (227)
T ss_dssp EEEEECTTTTHHHHHHHHHHHHHHT--CCSEEEEECT---TSCEEEECHHHHHHHTCCTHHHHSSCGGGGBC--------
T ss_pred EEEEehhhHHHHHHHHHHHHHHHhc--CcCeEEEEcC---CCcEEEEchHHHHHhCCCHHHHcCCChhhccC--------
Confidence 4467889999888888777777666 8999999999 99999999999999999999999999887753
Q ss_pred CCCCChHHHHHHHHHHHhCcceEEEEEEEeecCc------ceeEEEEEEEeeCCCCCEEEEEEEEEe
Q 048754 106 HPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGT------PLVNRLRLAPIRDDDGTVTHIIGIQIF 166 (625)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~------~~~~~~~~~~~~d~~g~~~~~i~~~~D 166 (625)
|.........+++.+..++.+..++..++++|. .+|+.+++.|+.|.+|.+.+++++.+|
T Consensus 162 -~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~~~pi~d~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 162 -PLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHD 227 (227)
T ss_dssp -TTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEEEEEEECSSSCEEEEEEEEEC
T ss_pred -CCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEEEEEEECCCCCEEEEEEEecC
Confidence 446677788888899999999999999999997 799999999999999999999999887
No 29
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.48 E-value=8.8e-14 Score=123.34 Aligned_cols=121 Identities=36% Similarity=0.605 Sum_probs=101.8
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (625)
.+.+++. ++++|+++|...++|+|+++|+++++++||++++++|++...+.. |.........+...+..
T Consensus 37 ~~~~~~~--~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~---------~~~~~~~~~~~~~~~~~ 105 (166)
T 3ue6_A 37 LVKALQM--AQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQG---------PETDPRAVDKIRNAITK 105 (166)
T ss_dssp HHHHHHH--TTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCC---------TTSCHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeC---------CCCCHHHHHHHHHHHhc
Confidence 3444445 899999999721249999999999999999999999999877753 34556667777788888
Q ss_pred CcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 124 GIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 124 ~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+..+..+....+++|..+|+.+.+.|+.+.+|.+.+++++++|||++|+.+.
T Consensus 106 ~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~~~ 157 (166)
T 3ue6_A 106 GVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAKLL 157 (166)
T ss_dssp TCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHHHH
T ss_pred CCceEEEEEEEcCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHHHH
Confidence 8889899999999999999999999999999999999999999999987654
No 30
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.46 E-value=1.9e-13 Score=113.02 Aligned_cols=112 Identities=20% Similarity=0.225 Sum_probs=91.9
Q ss_pred CCeeEEEec-CCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEE
Q 048754 53 TPTSFVVAD-AFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGEL 131 (625)
Q Consensus 53 ~~~~i~~~d-~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 131 (625)
+.+++|..| . +++++++|+++++++||+++++.+ . ..+. +.+||++.+.....+.+.+..+..+..|+
T Consensus 2 a~~giw~~d~~---~~~~~~~n~~~~~l~G~~~~e~~~-~-~~~~------~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ 70 (115)
T 3h9w_A 2 TKAIPWKINWQ---TMAFEYIGPQIEALLGWPQGSWKS-V-EDWA------TRMHPEDQEWVVNFCVKQSECGVDHEADY 70 (115)
T ss_dssp -CCEEEEEETT---TTEEEEECTHHHHHHCSCGGGCCB-H-HHHH------HSBCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cceEEEEEEcC---CCcEEEEChhHHHHhCCChHHccC-H-HHHH------HhcCHHHHHHHHHHHHHHHhcCCcccEEE
Confidence 567899999 5 788999999999999999999988 2 1111 12466666666677777788788888999
Q ss_pred EEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 132 LNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 132 ~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+++++||+.+|+.....|+.+.+|.+.+++|+..|||++|..|+
T Consensus 71 r~~~~dG~~~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 71 RALHRDGHYVWIRDVVHVVRDDSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp EEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECGGGGC---
T ss_pred EEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEeccCccccccc
Confidence 99999999999999999999999999999999999999998764
No 31
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.46 E-value=1.1e-12 Score=110.55 Aligned_cols=117 Identities=32% Similarity=0.574 Sum_probs=97.8
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGE 130 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 130 (625)
+.++++|+++|...++|+|+++|+++++++|+++++++|++...+.. +.........+...+..+..+..+
T Consensus 4 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~e 74 (128)
T 3t50_A 4 EFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQG---------HGTDPAHVRAIKSAIAAEKPIDID 74 (128)
T ss_dssp CCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCC---------TTSCHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcC---------CccCHHHHHHHHHHHHcCCCceeE
Confidence 45889999998622256999999999999999999999999877753 345566667777888888888889
Q ss_pred EEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCc
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHV 176 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~ 176 (625)
.+..+++|..+|+.+.+.|+.+.+|.+.+++++++|||++|++|+.
T Consensus 75 ~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~ 120 (128)
T 3t50_A 75 IINYKKSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGS 120 (128)
T ss_dssp EEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC----
T ss_pred EEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhh
Confidence 9999999999999999999999999999999999999999988763
No 32
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.45 E-value=2.3e-12 Score=105.89 Aligned_cols=112 Identities=36% Similarity=0.597 Sum_probs=96.4
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGE 130 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 130 (625)
+.++++++++|...++|+|+++|+++++++|+++++++|++...+.. +.........+.+.+..+..+..+
T Consensus 4 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 74 (115)
T 4eet_B 4 EFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQG---------PETDQATVQKIRDAIRDQRETTVQ 74 (115)
T ss_dssp -CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCC---------TTSCHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcC---------CCCChHHHHHHHHHHHcCCCcceE
Confidence 44889999998643479999999999999999999999998776643 345566667778888888888889
Q ss_pred EEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeeccc
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKI 171 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~ 171 (625)
.+..+++|+.+|+.+.+.|+.+.+|.+.+++++.+|||+++
T Consensus 75 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 75 LINYTKSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp EEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECSCCC
T ss_pred EEEecCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeecccC
Confidence 99999999999999999999999999999999999999874
No 33
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.41 E-value=1.4e-12 Score=108.50 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=76.2
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcc----eE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIE----FQ 128 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 128 (625)
++++|+++|. +|+|+++|+++++++||+++|++|++...+.++. ........+......+.. ..
T Consensus 2 ~~d~i~~~d~---~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 69 (119)
T 2vv6_A 2 IPDAMIVIDG---HGIIQLFSTAAERLFGWSELEAIGQNVNILMPEP---------DRSRHDSYISRYRTTSDPHIIGIG 69 (119)
T ss_dssp CCCEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTT---------HHHHHHHHHHHHHHHCCCSSTTTC
T ss_pred CcceEEEECC---CCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCch---------HHHHHHHHHHHHhcCCCcccCCCc
Confidence 6789999999 9999999999999999999999999887764311 111112223333333322 23
Q ss_pred EEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 129 GELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 129 ~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.+...+++||+.+|+.+++.|+.+. ....++++++|||++|++|+
T Consensus 70 ~~~~~~~~dG~~~~~~~~~~~~~~~--~~~~~~~~~~DITerk~~e~ 114 (119)
T 2vv6_A 70 RIVTGKRRDGTTFPMHLSIGEMQSG--GEPYFTGFVRDLTEHQQTQA 114 (119)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEET--TEEEEEEEEEECC-------
T ss_pred eEEEEEeCCCCEEEEEEEEEEEEEC--CeEEEEEEEEEcHHHHHHHH
Confidence 4667789999999999999999764 33568999999999998876
No 34
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.41 E-value=1.4e-12 Score=108.96 Aligned_cols=114 Identities=16% Similarity=0.007 Sum_probs=89.8
Q ss_pred ccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCC--CcccccCCcccccCCCCCChHHHHHHHHHHH
Q 048754 45 PGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRN--CRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (625)
+.+++. ++++++++|. ++.++++|+++++++|+++++++|.. ...+ .||++.......+...+.
T Consensus 10 ~~~~~~--~~~~i~~~d~---~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~---------~~~~d~~~~~~~~~~~~~ 75 (125)
T 3nja_A 10 HTAESD--AGIGSWVLHM---ESGRLEWSQAVHDIFGTDSATFDATEDAYFQR---------VHPDDRARVRRELDRHVL 75 (125)
T ss_dssp ---------CCEEEEEET---TTTEEEECHHHHHHHTCCTTTCCCBHHHHHHH---------BCTTTHHHHHHHHHHHHH
T ss_pred HHHHHh--CCeeEEEEEc---CCCcEEECHHHHHHhCCCcccccccHHHHHhh---------cChhHHHHHHHHHHHHHh
Confidence 344444 8999999999 99999999999999999999998832 2222 346566666667777777
Q ss_pred hCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccc
Q 048754 123 EGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKID 172 (625)
Q Consensus 123 ~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~ 172 (625)
.+..+..+++..+++|+..|+.+...|+.+.+|.+.+++++++|||++|+
T Consensus 76 ~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 76 GDRPFDVEYRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp SCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred cCCCceEEEEEECCCCCEEEEEEeeEEEECCCCCEEEEEEEEEecccccC
Confidence 78888889999999999999999999999999999999999999999873
No 35
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.37 E-value=4.5e-13 Score=111.73 Aligned_cols=113 Identities=11% Similarity=0.034 Sum_probs=85.3
Q ss_pred cccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCc
Q 048754 46 GLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGI 125 (625)
Q Consensus 46 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (625)
.+++. ++++|+ ++. +|+|+++|+++++++||++++++|++...+.+++ .........+.+.+..+.
T Consensus 7 ~~~~~--~~~~i~-~~~---~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 72 (120)
T 3mqq_A 7 TAFHL--APIGLV-LSR---DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSS--------DEFERIGERISPVMIAHG 72 (120)
T ss_dssp HHHHH--CSSEEE-EEE---TTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSH--------HHHHHHHHHHHHHHHHHS
T ss_pred HHHhc--CCceEE-Eec---CCEEHHHHHHHHHHhCcCHHHhCCCchhhccCCh--------hhHHHHHHHHHHHHhcCC
Confidence 44455 889996 477 9999999999999999999999999877664311 011223344556666777
Q ss_pred ceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeeccccc
Q 048754 126 EFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDL 173 (625)
Q Consensus 126 ~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~ 173 (625)
.+..|.+.+++||+.+|+.+...++ +.++...+++++++|||++|++
T Consensus 73 ~~~~e~~~~~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 73 SYADDRIMKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred cceEEEEEEeCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhcc
Confidence 8888999999999999999999998 5556566789999999999865
No 36
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.36 E-value=6.9e-12 Score=125.21 Aligned_cols=116 Identities=34% Similarity=0.583 Sum_probs=102.0
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGE 130 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 130 (625)
+.++++|+++|...++|+|+++|+++++++||+++|++|++...+.. |.........+.+.+..+..+..+
T Consensus 18 ~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~e 88 (332)
T 2wkq_A 18 ERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQG---------PETDRATVRKIRDAIDNQTEVTVQ 88 (332)
T ss_dssp GGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCC---------TTCCHHHHHHHHHHHHTTCCEEEE
T ss_pred hcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcC---------CCCCHHHHHHHHHHHHcCCeeEEE
Confidence 34899999998644479999999999999999999999999877743 445666777788888888899999
Q ss_pred EEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.+.+++||+.+|+.+.+.|+.+.+|.+.+++++.+|||++++.++
T Consensus 89 ~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~ 133 (332)
T 2wkq_A 89 LINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAA 133 (332)
T ss_dssp EEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHH
T ss_pred EEEEcCCCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhh
Confidence 999999999999999999999999999999999999999987654
No 37
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.35 E-value=2.6e-12 Score=106.60 Aligned_cols=106 Identities=22% Similarity=0.214 Sum_probs=81.2
Q ss_pred ecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHH
Q 048754 43 LKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122 (625)
Q Consensus 43 ~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (625)
+.+.+++. ++++|+++|. +|+|+++|+++++++||+++|++|++...+..+ ..........+.+.
T Consensus 12 ~~~~l~e~--~~d~i~~~d~---~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~----------~~~~~~~~~~~~~~ 76 (117)
T 2r78_A 12 AYRALFEH--AIDGIFIMDA---EGHYLDVNPAICSAIGYTRDEFLALDWGVLSRG----------VDSGWAAASLARIV 76 (117)
T ss_dssp HHHHHHHH--CSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTC----------STTSHHHHHHHHHH
T ss_pred HHHHHHhc--CCceEEEECC---CCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCc----------cchhHHHHHHHHHH
Confidence 34555666 9999999999 999999999999999999999999986655321 11122333445566
Q ss_pred hCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 123 EGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 123 ~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
.+..+..+.+.+++||+.+|+.+++.|+. +|. ++++++|||
T Consensus 77 ~~~~~~~e~~~~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT 117 (117)
T 2r78_A 77 GGEPLREERTVWTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp TTCCEEEEEEEECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred cCCcEEEEEEEEecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence 67777888899999999999999999886 455 678899997
No 38
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.34 E-value=9.2e-12 Score=103.23 Aligned_cols=115 Identities=23% Similarity=0.250 Sum_probs=95.6
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (625)
.+.+++. ++++++++|. +|+++++|+++++++|+++++++|++...+.. +.........+.+.+..
T Consensus 9 ~~~~~~~--~~~~i~~~d~---~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~ 74 (124)
T 3lyx_A 9 RAKAFDY--VFDAIVVTDL---QGFIIDWNKGSETLYGYSKEQAIGQPVNMLHV---------PGDTEHITSEVISAVEN 74 (124)
T ss_dssp HHHGGGT--CSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBGGGGSC---------TTTHHHHHHHHHHHHHH
T ss_pred HHHHHhh--cCceEEEECC---CCcEeehhhHHHHHhCCCHHHHcCCCHHHhcC---------cchhhHHHHHHHHHHHc
Confidence 3445555 8999999999 99999999999999999999999998775532 22333445567777788
Q ss_pred CcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccc
Q 048754 124 GIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKID 172 (625)
Q Consensus 124 ~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~ 172 (625)
+..+..+.....++|..+|+.+...|+.+.+|.+.+++++.+|||++|+
T Consensus 75 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 75 QGKWTGEIRMLHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp TSCEEEEEEEECTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred CCcccceEEEEccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhhc
Confidence 8888888888999999999999999999999999999999999999875
No 39
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.33 E-value=2.3e-11 Score=101.29 Aligned_cols=108 Identities=14% Similarity=0.169 Sum_probs=87.6
Q ss_pred CCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC-cceEEE
Q 048754 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG-IEFQGE 130 (625)
Q Consensus 52 ~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e 130 (625)
.+++.|++.|. +|+++++|+++++++||+++|++|++..++. ||++.......+.+.+..+ .....+
T Consensus 11 ~~~~~i~~~d~---~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~---------~p~d~~~~~~~~~~~~~~~~~~~~~e 78 (121)
T 2kdk_A 11 KPTEFITRFAV---NGKFVYVDQRATAILGYLPQELLGTSCYEYF---------HQDDHNNLTDKHKAVLQSKEKILTDS 78 (121)
T ss_dssp CSSEEEEEECT---TSBEEEECTHHHHHTCCCTTTSBTSBTTTTB---------CSSSHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CCccEEEEECC---CeeEEEEChhHHHHHCCCHHHHcCCcHHHee---------CHHHHHHHHHHHHHHHhCCCCCccEE
Confidence 38899999999 9999999999999999999999999877664 3555554545555555543 345678
Q ss_pred EEEEeecCcceeEEEEEEEeeCCC-CCEEEEEEEEEeeeccc
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDD-GTVTHIIGIQIFSEAKI 171 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~-g~~~~~i~~~~Dit~~~ 171 (625)
++++++||+.+|+.+...|+.+.. +.+..++++.+||++.+
T Consensus 79 ~r~~~~dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 79 YKFRAKDGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp EEEECSSSCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSCC
T ss_pred EEEEEcCCCEEEEEEEEEEEECCCCCeeeEEEEEEEeccccC
Confidence 899999999999999999999875 46777889999999875
No 40
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.33 E-value=2.4e-12 Score=113.54 Aligned_cols=120 Identities=34% Similarity=0.531 Sum_probs=102.8
Q ss_pred eecccccccCCCCeeEEEecCCCCCC---CEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHH
Q 048754 42 SLKPGLLFYPTTPTSFVVADAFDPDF---PIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIR 118 (625)
Q Consensus 42 ~~~~~~~~~~~~~~~i~~~d~~~~~g---~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 118 (625)
++.+.+++. ++++|+++|. +| +|+++|+++++++|++.++++|+....+.. +.........+.
T Consensus 25 ~~~~~i~~~--~~~~i~~~d~---~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~ 90 (162)
T 3sw1_A 25 QLLQSMVDA--SNDGIVVAEK---EGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQG---------DDRDQLGRARIR 90 (162)
T ss_dssp HHHHHHHHT--CSSEEEEEEE---ETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTT---------TCCCCHHHHHHH
T ss_pred HHHHHHHhh--ccCcEEEEeC---CCCccEEEEECHHHHHHHCCCHHHHcCCCcceecC---------CCcCHHHHHHHH
Confidence 344555555 8999999999 99 999999999999999999999998877653 334555666777
Q ss_pred HHHHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 119 RCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 119 ~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
..+..+..+..+....+++|..+|+.+.+.|+.+.+|.+.+++++++|||+++++++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~ 147 (162)
T 3sw1_A 91 KAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELER 147 (162)
T ss_dssp HHHHHTCCEEEEEEEECTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHH
T ss_pred HHHhcCCCCcceEEEECCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHH
Confidence 788888888888888899999999999999999999999999999999999988765
No 41
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.31 E-value=2.6e-11 Score=101.28 Aligned_cols=117 Identities=41% Similarity=0.708 Sum_probs=97.1
Q ss_pred ccccccCCCCeeEEEec---CCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHH
Q 048754 45 PGLLFYPTTPTSFVVAD---AFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCL 121 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d---~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (625)
+.+++. ++++++++| . +|.++++|+++++++|++.++++|++...+.. +.........+...+
T Consensus 9 ~~~~~~--~~~~i~~~d~~d~---~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~ 74 (130)
T 2z6d_A 9 KTALST--LQQTFVVSDATQP---HCPIVYASSGFFTMTGYSSKEIVGRNCRFLQG---------PDTDKNEVAKIRDCV 74 (130)
T ss_dssp HHHHHH--TTCEEEEEETTST---TCCEEEECHHHHHHHCCCHHHHTTSCGGGGCC---------TTSCHHHHHHHHHHH
T ss_pred HHHHHh--cccceeeeeccCC---CCcEEEecHHHHHHhCcCHHHHcCCChhhccC---------CCCCchHHHHHHHHH
Confidence 344555 899999999 7 99999999999999999999999998877643 334555666677777
Q ss_pred HhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 122 EEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 122 ~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
..+..+..+....+++|...|+.+.+.|+.+.+|.+.+++++.+|||+++++++
T Consensus 75 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e~ 128 (130)
T 2z6d_A 75 KNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVN 128 (130)
T ss_dssp HTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC----
T ss_pred HcCCcceeEEEEEcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhhc
Confidence 788888888888889999999999999999999999999999999999987654
No 42
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.31 E-value=3.9e-12 Score=107.68 Aligned_cols=105 Identities=22% Similarity=0.260 Sum_probs=78.1
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcc---
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIE--- 126 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 126 (625)
++.++++|+++|. +|+|+++|+++++++||+++|++|++...+.++ .........+......+..
T Consensus 22 ~~~~~d~i~~~d~---~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~ 89 (130)
T 1d06_A 22 LDTVPDATVVSAT---DGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPE---------PYRHEHDGYLQRYMATGEKRII 89 (130)
T ss_dssp HTTCSSEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCT---------THHHHHHHHHHHHHHHCCCSST
T ss_pred HhhCcCeEEEECC---CCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCc---------hhHHHHHHHHHHHHhcCCcccc
Confidence 4449999999999 999999999999999999999999988777531 1112222223333333322
Q ss_pred -eEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 127 -FQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 127 -~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
...+...+++||+.+|+.+++.|+.+. ....++++++|||
T Consensus 90 ~~~~e~~~~~kdG~~~~~~~~~~~~~~~--~~~~~~~~~~DIT 130 (130)
T 1d06_A 90 GIDRVVSGQRKDGSTFPMKLAVGEMRSG--GERFFTGFIRDLT 130 (130)
T ss_dssp TSCEEEEEECTTSCEEEEEEEEEEEEET--TEEEEEEEEEECC
T ss_pred CCeeEEEEEeCCCCEEEEEEEEEEEEEC--CeEEEEEEEEECc
Confidence 234677889999999999999999753 3456889999997
No 43
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.29 E-value=2e-12 Score=111.85 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=85.6
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (625)
.+.+++. ++++|+++|. +|+|+++|+++++++|+++++++|++..++++ .........+.+++..
T Consensus 24 l~~il~~--~~~gi~v~D~---~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p----------~~~~~~~~~l~~vl~~ 88 (152)
T 3mxq_A 24 LSELLDQ--LSFALCIVRN---DYVIVKVNEYFESRVIFDGETMQGKNILELFP----------ESADYLKRKIDTALVI 88 (152)
T ss_dssp HHHHHHH--HCCEEEEEET---TSBEEEECHHHHHTSSSCHHHHTTSBHHHHSG----------GGHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCEEEEcC---CCEEEEECHHHHHHHCcCHHHHCCCCHHHhcC----------ChHHHHHHHHHHHHhc
Confidence 3556666 8999999999 99999999999999999999999999888864 3122334556677777
Q ss_pred CcceEEEE---------E---EEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeeccccc
Q 048754 124 GIEFQGEL---------L---NFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDL 173 (625)
Q Consensus 124 ~~~~~~e~---------~---~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~ 173 (625)
|.+..... . ...++|...+..+++.|+.|.+|.+.+++.+++|||+++.+
T Consensus 89 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 89 ESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp TSCEEEECCSSSCSSCC----------CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC---
T ss_pred CCceeeecccccccccccccCCCCCCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhc
Confidence 76533211 1 12346677888999999999999999999999999998754
No 44
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.28 E-value=7.7e-12 Score=113.22 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=90.3
Q ss_pred ecccccccCCCCeeEEEec-CCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHH
Q 048754 43 LKPGLLFYPTTPTSFVVAD-AFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCL 121 (625)
Q Consensus 43 ~~~~~~~~~~~~~~i~~~d-~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (625)
+.+.+++. ++++|+++| . +|+|+++|+++++++|++ +++|++..+++++ .........+.+.+
T Consensus 38 ~l~~l~~~--~~~~i~~~d~~---~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~---------~~~~~~~~~~~~~~ 101 (185)
T 3kx0_X 38 DVRRIFEH--IPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPE---------LEGQQIYEMLDRVY 101 (185)
T ss_dssp HHHHHHHH--CSSEEEEEETT---TTEEEEECHHHHHHCCCC--SCTTSBHHHHCTT---------SCSSSSHHHHHHHH
T ss_pred HHHHHHhc--CCceEEEEECC---CcEEEEEcHHHHHHcCCc--cccCCcHHHHCCc---------hhhhhHHHHHHHHH
Confidence 34455556 899999999 9 999999999999999999 8999998777542 22333445566777
Q ss_pred HhCcceEEEEE-E--Eeec--CcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCc
Q 048754 122 EEGIEFQGELL-N--FKKD--GTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHV 176 (625)
Q Consensus 122 ~~~~~~~~e~~-~--~~~d--G~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~ 176 (625)
..+.....+.. . .+++ |...|+.+.+.|+.+.+|.+.+++++++|||++|++|+.
T Consensus 102 ~~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~ 161 (185)
T 3kx0_X 102 QTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQA 161 (185)
T ss_dssp HHCCCEEEEEEEEC--------CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC-
T ss_pred HcCCcccccceeEEeeccCCCCccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHH
Confidence 77777655422 2 2222 778999999999999999999999999999999998774
No 45
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.26 E-value=1e-10 Score=100.04 Aligned_cols=117 Identities=36% Similarity=0.603 Sum_probs=98.6
Q ss_pred cccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCc
Q 048754 46 GLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGI 125 (625)
Q Consensus 46 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (625)
.+++. ++++++++|..+++|.++++|+++++++|+++++++|++...+.. |.........+...+..+.
T Consensus 6 ~~~~~--~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 74 (146)
T 2v0u_A 6 TTLER--IEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQG---------PETDRATVRKIRDAIDNQT 74 (146)
T ss_dssp CTGGG--SSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCC---------TTSCHHHHHHHHHHHHTTC
T ss_pred HHHhc--CCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcC---------CcCChHHHHHHHHHHhcCC
Confidence 44444 889999988633368999999999999999999999998877643 3455566677777888888
Q ss_pred ceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeeccccc
Q 048754 126 EFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDL 173 (625)
Q Consensus 126 ~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~ 173 (625)
.+..+....+++|..+|+.+...|+.+.+|.+.+++++.+|||++++.
T Consensus 75 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~ 122 (146)
T 2v0u_A 75 EVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRD 122 (146)
T ss_dssp CEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCH
T ss_pred CcceEEEEEecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHHH
Confidence 888888889999999999999999999999999999999999999873
No 46
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.26 E-value=5.9e-12 Score=110.54 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=91.2
Q ss_pred ecccccccCCCCeeEEEec-CCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHH
Q 048754 43 LKPGLLFYPTTPTSFVVAD-AFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCL 121 (625)
Q Consensus 43 ~~~~~~~~~~~~~~i~~~d-~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (625)
..+.+++. ++++|+++| . +|+|+++|+++++++|++ +++|++..+++++ .........+.+.+
T Consensus 18 ~~~~~~~~--~~~~i~~~d~~---~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~---------~~~~~~~~~~~~~~ 81 (158)
T 3k3c_A 18 DVRRIFEH--IPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPE---------LEGQQIYEMLDRVY 81 (158)
T ss_dssp HHHHHHHH--CSSEEEEEETT---TTEEEEECHHHHHHCTTC--CSTTSBHHHHSGG---------GGGTTHHHHHHHHH
T ss_pred HHHHHHhc--CCceEEEEECC---CcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCc---------hhHHHHHHHHHHHH
Confidence 34455666 899999999 8 999999999999999999 8999988777542 22333455666777
Q ss_pred HhCcceEEEEE-E--Eee-c-CcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 122 EEGIEFQGELL-N--FKK-D-GTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 122 ~~~~~~~~e~~-~--~~~-d-G~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
..+.+...+.. . .+. + |...|+.+.+.|+.+.+|.+.+++++++|||++|++|+
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~ 140 (158)
T 3k3c_A 82 QTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQ 140 (158)
T ss_dssp HHCCCEEEEEEEEEEESSSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHH
T ss_pred HhCCcccccceeEEeccCCCCcceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHH
Confidence 77777554432 2 221 2 66789999999999999999999999999999998766
No 47
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.26 E-value=3.6e-11 Score=98.43 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=84.1
Q ss_pred cccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCc
Q 048754 46 GLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGI 125 (625)
Q Consensus 46 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (625)
.+++. ++++++++|. +|+++++|+++++++|+++++++|++..++.+ .........+.+.+ .++
T Consensus 7 ~~~~~--~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~----------~~~~~~~~~~~~~~-~~~ 70 (114)
T 3luq_A 7 LFTEH--APAALAMFDR---EMRYLAVSRRWREDYGLGDGDILGMSHYDIFP----------EIGEEWKSVHRRGL-AGE 70 (114)
T ss_dssp HHHHT--CSSEEEEEET---TCBEEEECHHHHHHTTCCSSCCTTCBHHHHCT----------TCCHHHHHHHHHHH-TTC
T ss_pred HHHhc--CCceEEEEcC---CcEEEEECHHHHHHHCCCHHHHcCCcHHHHCC----------ccHHHHHHHHHHHh-cCC
Confidence 44444 8999999999 99999999999999999999999998877752 23344333444444 455
Q ss_pred ceEEEE-EEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 126 EFQGEL-LNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 126 ~~~~e~-~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
....+. ...+++|+..|+.+...|+.+.+|.+.+++++++|||
T Consensus 71 ~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 71 VIRVEEDCFVRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp CEEEEEEEEEC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred cceeeeeEEEcCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 544443 7788899999999999999999999999999999997
No 48
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.25 E-value=1.8e-10 Score=92.88 Aligned_cols=107 Identities=27% Similarity=0.434 Sum_probs=87.7
Q ss_pred eeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCC--CcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 55 TSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRN--CRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 55 ~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
.+|+++|..+.+|+|+++|+++++++|+++++++|++ ...+.. +.........+.+.+..+..+..+..
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHG---------PCTQRRAAAQIAQALLGAEERKVEIA 72 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCC---------TTCCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccC---------CcCCHHHHHHHHHHHhcCCCceEEEE
Confidence 5788888733359999999999999999999999987 333322 23344455667777777888888888
Q ss_pred EEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecc
Q 048754 133 NFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~ 170 (625)
..+++|..+|+.+...|+.+.+|.+.+++++.+|||++
T Consensus 73 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 73 FYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EECTTSCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred EEcCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccCC
Confidence 88999999999999999999999999999999999975
No 49
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.21 E-value=1.3e-11 Score=101.96 Aligned_cols=111 Identities=12% Similarity=-0.019 Sum_probs=93.0
Q ss_pred cccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCc
Q 048754 46 GLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGI 125 (625)
Q Consensus 46 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (625)
.+++. ++++++.+|. ++.++++|+++++++||+++++.+.....+. ..||++.+.....+.+.+..+.
T Consensus 8 ~l~~~--~~~~i~~~d~---~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~-------~i~p~d~~~~~~~~~~~~~~~~ 75 (118)
T 3icy_A 8 ALVDN--IPAAIYHLDV---SGQATIRFRPPAFLKTLVSEHAGTTRLNTLS-------MIHHDDRHMLSNAYSKLREAKH 75 (118)
T ss_dssp HHHTT--CCCCCEEECT---TSCEEECCCCCGGGGGGEEEETTEEEEGGGG-------GBCGGGHHHHHHHHHHHHHSCC
T ss_pred HHHhc--CCceEEEEEc---CCCceEEechhHhhcCCCHHHccCChhHHHH-------HcCHHHHHHHHHHHHHHHhcCC
Confidence 34444 8999999999 9999999999999999999998776532221 1456666666677777778888
Q ss_pred ceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 126 EFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 126 ~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
.+..++++.+++|+..|+.....|+.+.+|.+.+++|+++|||
T Consensus 76 ~~~~e~r~~~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 76 SLTLVYRIVTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred CceEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 8888999999999999999999999999999999999999997
No 50
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.21 E-value=1.5e-10 Score=100.23 Aligned_cols=113 Identities=36% Similarity=0.646 Sum_probs=88.0
Q ss_pred CeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcc--cccCCCCCChHHHHHHHHHHHhCcceEEEE
Q 048754 54 PTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPR--AQRRHPLVDPVVVSEIRRCLEEGIEFQGEL 131 (625)
Q Consensus 54 ~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 131 (625)
+++|+++|..+.+|+|+++|+++++++||++++++|++...+..++.. ..+.++.........+.+.+..+..+..+.
T Consensus 35 ~~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 114 (149)
T 3d72_A 35 SVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQVEV 114 (149)
T ss_dssp TSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCCEEEEE
T ss_pred CccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCceEEEE
Confidence 489999982222999999999999999999999999988777542100 000001125556667777788888888899
Q ss_pred EEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEe
Q 048754 132 LNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIF 166 (625)
Q Consensus 132 ~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~D 166 (625)
+..++||+.+|+.+.+.|+.+.+|.+.+++++.+|
T Consensus 115 ~~~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 115 VNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp EEECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred EEECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 99999999999999999999999999999988765
No 51
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.20 E-value=2.3e-11 Score=100.42 Aligned_cols=113 Identities=11% Similarity=0.065 Sum_probs=85.3
Q ss_pred ccccceeeecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHH
Q 048754 35 GGDDTELSLKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVV 114 (625)
Q Consensus 35 ~~~e~~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 114 (625)
++.+.++++.+.+++. ++++|+++|. +|+|+++|+++++++||++++++|++..++.+.. ....
T Consensus 6 ~~~e~~~~~~~~~~~~--~~~~i~~~d~---~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~----------~~~~- 69 (118)
T 3olo_A 6 IQSELEFKFAHYLINN--AVEASFCLGD---NWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDF----------ALHD- 69 (118)
T ss_dssp -CHHHHHHHHHHHHHH--CSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTG----------GGSC-
T ss_pred HHHHHHHHHHHHHHhc--CCceEEEECC---CCcEEEEHHHHHHHHCCCHHHHhCCChhhccccc----------CHHH-
Confidence 3344455555566666 9999999999 9999999999999999999999999887775321 1111
Q ss_pred HHHHHHHHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 115 SEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
.+.+..+..+..+.+..+++|+.+|+.+...++.+.. ...++++++|||
T Consensus 70 ---~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~DIT 118 (118)
T 3olo_A 70 ---WEEIRQKNNYTFKTRYRSQSGRIFLVEMSLTFLEDQE--RRFSCVFVREKS 118 (118)
T ss_dssp ---HHHHHHHSEEEEEEEEECTTCCEEEEEEEEEEEEETT--EEEEEEEEEEC-
T ss_pred ---HHHHHhcCcEEEEEEEEccCCCEEEEEEEEEEEEECC--ccEEEEEEEeCC
Confidence 2334445667788888999999999999999987643 346778999997
No 52
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=99.18 E-value=4.2e-12 Score=136.86 Aligned_cols=111 Identities=13% Similarity=0.128 Sum_probs=96.8
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGE 130 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 130 (625)
+++.++|+++|. +|+|+++|++|++++||++++++|+....+. |++ .......+.+.+..++.+..|
T Consensus 525 e~a~~~i~~~D~---~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~---------~~~-~~~~~~~i~~~l~~g~~~~~E 591 (635)
T 4eho_A 525 HASMQPVLITDA---EGRILLMNDSFRDMLPAGSPSAVHLDDLAGF---------FVE-SNDFLRNVAELIDHGRGWRGE 591 (635)
T ss_dssp HHCSSCCEEEET---TCCEEEECHHHHTTSCSSCCCCCSSGGGTTS---------SSS-CTHHHHHHHHHHHHCCCBCCC
T ss_pred HhCCCcEEEECC---CCeEeeHHHHHHHHHCcChHHHcCcchhhcc---------CCC-CHHHHHHHHHHHHcCCcEEEE
Confidence 448899999999 9999999999999999999999998654443 333 344566777888888999999
Q ss_pred EEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccC
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLN 174 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e 174 (625)
++.+++||+.+|+.+++.|++|.+|.+++++++.+|||++|++|
T Consensus 592 ~~~~~~dG~~~~~~~~~~pv~d~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 592 VLLRGAGNRPLPLAVRADPVTRTEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp CEECCSSSSCEECCCCEEEECSTTSSCCEEEECCCCCSSSCCCC
T ss_pred EEEEccCCcEEEEEEEEEEEECCCCCEEEEEEEEEeCchHhhCC
Confidence 99999999999999999999999999999999999999999765
No 53
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.17 E-value=6.7e-11 Score=98.25 Aligned_cols=107 Identities=17% Similarity=0.165 Sum_probs=85.0
Q ss_pred CCCCeeEEEecCCCCC-CCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 51 PTTPTSFVVADAFDPD-FPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~-g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
+.++++++++|. + |+++++|+++++++|+++++++|.....+. ..||++.......+.. +..+..+..
T Consensus 18 ~~~~~~i~~~d~---~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~ 86 (125)
T 3eeh_A 18 EATNDILWEFTA---DLSEVLVINSAYEDIWGRSVAKLRENPHDFLN-------GIHPEDRELMKDTMQS-LMDGESADV 86 (125)
T ss_dssp SCCCCEEEEEET---TSSCEEEECTHHHHHHSSCHHHHHHCGGGGGG-------GBCHHHHHHHHHHHHH-HHTTCCEEE
T ss_pred hcCCceEEEEEc---CCCcEEEecHHHHHHHCCCHHHHccCcHHHHH-------hcCHHHHHHHHHHHHH-HHcCCCccE
Confidence 449999999999 8 999999999999999999999987632111 1223333333333333 567777888
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
+.+..+++|+..|+.+...|+.+.+|.+.+++++.+|||
T Consensus 87 e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 87 ECRVNATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp EEEECGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEEEEcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 888899999999999999999999999999999999997
No 54
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.14 E-value=2.2e-10 Score=95.60 Aligned_cols=109 Identities=12% Similarity=0.045 Sum_probs=78.5
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
++++++++|. +|+|+++|+++++++|+++++++|++..++..+ .........+...+. +.....+.+
T Consensus 8 ~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~ 74 (126)
T 3mjq_A 8 IEDMILIINR---EGRLLYANTAVPKKLGYTHEELMSMHILTITSA---------GKMAEGEKILAELFA-GKKESLPLS 74 (126)
T ss_dssp CSSEEEEEET---TSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCT---------TCHHHHHHHHHHHHH-TCCSEEEEE
T ss_pred CCceEEEEeC---CCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCc---------hhHHHHHHHHHHHHh-CCCceeEEE
Confidence 8999999999 999999999999999999999999987777532 222333334444444 344467788
Q ss_pred EEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCc
Q 048754 133 NFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHV 176 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~ 176 (625)
..+++|..+|+.+...++.. +...+++++++|||+++++++.
T Consensus 75 ~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~DITe~k~a~~~ 116 (126)
T 3mjq_A 75 LEKKEGTSIPAKARIWQGKW--HNEPCLFAIIKDLSKEERASSP 116 (126)
T ss_dssp EECTTSCEEEEEEEEEEEES--SSSEEEEEEEEECC--------
T ss_pred EEccCCCEEEEEEEEEeeeE--CCceEEEEEEEechHHHHhhcc
Confidence 88899999999999887664 3356789999999999988764
No 55
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.06 E-value=1.6e-09 Score=91.46 Aligned_cols=112 Identities=26% Similarity=0.424 Sum_probs=90.5
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCC--CcccccCCcccccCCCCCChHHHHHHHHHHHhCcce
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRN--CRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEF 127 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (625)
++.++++++++|...++|+|+++|+++++++|++.++++|++ ...+.. +.........+.+.+..+..+
T Consensus 25 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 95 (138)
T 2l0w_A 25 FEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHG---------PRTQRRAAAQIAQALLGAEER 95 (138)
T ss_dssp HTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCC---------TTCCHHHHHHHHHHTTCSSCE
T ss_pred HhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCC---------cccchhHHHHHHHHHhhcCCc
Confidence 445889999998522258999999999999999999999987 444432 234444455666667777778
Q ss_pred EEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecc
Q 048754 128 QGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 128 ~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~ 170 (625)
..+....+++|..+|+.+.+.|+.+.+|.+.+++++.+|||++
T Consensus 96 ~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 96 KVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEC
T ss_pred eeEEEEECCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccCC
Confidence 8888888999999999999999999999999999999999975
No 56
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.05 E-value=2.6e-10 Score=114.38 Aligned_cols=109 Identities=9% Similarity=-0.046 Sum_probs=93.7
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
....++..+. +|.++++|+++..++||+++|++|++..++. ||++.+.....+.+.+..+.....+++
T Consensus 250 ~~~f~~~~~~---dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~i---------HpdD~~~~~~~~~~~l~~g~~~~~eyR 317 (361)
T 4f3l_A 250 NEEFTSRHSL---EWKFLFLDHRAPPIIGYLPFEVLGTSGYDYY---------HVDDLENLAKCHEHLMQYGKGKSCYYR 317 (361)
T ss_dssp CCEEEEEECT---TSBEEEECTTSHHHHCCCHHHHTTSBGGGGB---------CHHHHHHHHHHHHHHHHHSEEECCCEE
T ss_pred cceeEEEEcC---CceEEEECChhhhhhCcCHHHHcCCCHHHeE---------CHHHHHHHHHHHHHHHhCCCcceEEEE
Confidence 3456777788 9999999999999999999999999887774 566666666677777778877777899
Q ss_pred EEeecCcceeEEEEEEEeeCC-CCCEEEEEEEEEeeeccccc
Q 048754 133 NFKKDGTPLVNRLRLAPIRDD-DGTVTHIIGIQIFSEAKIDL 173 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~-~g~~~~~i~~~~Dit~~~~~ 173 (625)
++++||..+|+.....++.+. +|.+..++++.+|||+++..
T Consensus 318 ~~~kdG~~vWv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~ 359 (361)
T 4f3l_A 318 FLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVR 359 (361)
T ss_dssp EECTTSEEEEEEEEEEEEECTTTCCEEEEEEEEEECCHHHHH
T ss_pred EEecCCCEEEEEEEEEEEEcCCCCCeeEEEEEEEECChhHhh
Confidence 999999999999999999987 79999999999999998643
No 57
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.03 E-value=2.5e-10 Score=95.96 Aligned_cols=110 Identities=10% Similarity=-0.018 Sum_probs=76.6
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (625)
.+.+++. ++++|+++|. +|+|+++|+++++++||++++++|++..++..++ ........+......
T Consensus 9 l~~i~~~--~~d~i~~~D~---~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~---------~~~~~~~~~~~~~~~ 74 (129)
T 3mfx_A 9 IELFIQH--LTEAMILVNA---NGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEH---------HQARYDNLLSHDVQL 74 (129)
T ss_dssp HHHHHTT--CSSEEEEEET---TSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTT---------CCGGGGCTTC-----
T ss_pred HHHHHhc--CCceEEEECC---CCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChH---------hHHHHHHHHHHHHhc
Confidence 3445555 8999999999 9999999999999999999999999988886532 111111111111111
Q ss_pred C-------cceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecc
Q 048754 124 G-------IEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 124 ~-------~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~ 170 (625)
+ .....|+..+++||+.+|+.+++.|+.++ +. .++++++|+...
T Consensus 75 ~~~~~~~~~~~~~E~~~~rkdG~~~~velsis~i~~~-~~--~~v~~~~~~~~~ 125 (129)
T 3mfx_A 75 GTNCGQPVQHPAQETTLICASGKAKDVELSISYIPGH-EP--MFVMVMHDLEHH 125 (129)
T ss_dssp -----CCSCEEEEEEEEECTTSCEEEEEEEEEEECSS-SC--EEEEEEEEC---
T ss_pred CcccccccCCCceEEEEEcCCCCEEEEEEEEEEecCC-Cc--EEEEEEechhhh
Confidence 1 12456888899999999999999999832 22 478888887643
No 58
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.03 E-value=1.3e-10 Score=97.39 Aligned_cols=105 Identities=23% Similarity=0.149 Sum_probs=71.9
Q ss_pred ccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhc--CCCCcccccCCcccccCCCCCChHHHHHHHHHHH
Q 048754 45 PGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVL--GRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~--g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (625)
+.+++. ++++|+++|. +|+|+++|+++++++||+++|++ |++...+. | +.......+ ....
T Consensus 20 ~~l~e~--~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~----------~-~~~~~~~~~-~~~~ 82 (126)
T 3bwl_A 20 EALFEN--SPDMIDVLDA---DGTICEVNQRFCAELGYDESEVLGRSIWEFDLM----------F-DAEDVQTQL-SGFS 82 (126)
T ss_dssp HHHHHH--CSSEEEEECT---TCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTT----------C-CHHHHHHHH-HTCC
T ss_pred HHHHhh--CCcEEEEEcC---CCCEEEEcHHHHHHhCCCHHHHhhCCCchhhcc----------C-CHHHHHHHH-HHHh
Confidence 345555 9999999999 99999999999999999999995 55554443 1 111111111 1111
Q ss_pred hCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 123 EGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 123 ~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
.+.....+.+..++||+.+|+.+...++.+ +|. ..++++++|||
T Consensus 83 ~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~-~~~-~~~~~~~~DIT 126 (126)
T 3bwl_A 83 VDERRKFEGLYERRDGSTMSVEVHLLRFNL-EGE-DRFLAISRDIT 126 (126)
T ss_dssp TTCEEEEEEEEECTTSCEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred cCCCcceEEEEEeCCCCEEEEEEEeEEEec-CCc-EEEEEEEEeCC
Confidence 233344566778999999999988887743 344 35788999997
No 59
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.03 E-value=6.5e-10 Score=97.98 Aligned_cols=116 Identities=23% Similarity=0.289 Sum_probs=76.1
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (625)
.+.+++. ++++++++|. +|.|+++|+++++++|++.++++|++...+..+ .........+......
T Consensus 42 ~~~~l~~--~~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~---------~~~~~~~~~~~~~~~~ 107 (167)
T 1v9y_A 42 FFPALEQ--NMMGAVLINE---NDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPR---------DLRPAHPEYIRHNREG 107 (167)
T ss_dssp HHHHHHT--CSSEEEEECT---TSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCG---------GGTTTHHHHHHHHHC-
T ss_pred HHHHHHh--CCCCEEEECC---CCcEEEECHHHHHHhCCCHHHHcCCChhhccCc---------cccchHHHHHHHHhhc
Confidence 3344444 8999999999 999999999999999999999999988777532 1222222333333332
Q ss_pred Ccc----eEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 124 GIE----FQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 124 ~~~----~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+.. +..+.....++|..+|+.+...|+ +.+|.+ .++++++|||+++++++
T Consensus 108 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~~-~~~~~~~DiT~~~~~e~ 161 (167)
T 1v9y_A 108 GKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQKE 161 (167)
T ss_dssp ---------CEEEEECTTSCEEEEEEEEEEE-EETTEE-EEEEEEEC---------
T ss_pred CCCcccccceEEEEEcCCCcEEEEEEEEEEE-ecCCCE-EEEEEEecCcHHHHHHH
Confidence 222 344677788899999999999998 445655 48999999999987765
No 60
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.02 E-value=4.2e-10 Score=105.52 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=81.4
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHh------------CCCchhhcCCCCcccccCCcccccCCCCCCh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFT------------GYRADEVLGRNCRFLQYRDPRAQRRHPLVDP 111 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~------------G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~ 111 (625)
.+.+++. .+++|+++|. +|+|+++|+++++++ ||++++++|++...+.. .+
T Consensus 24 l~~iLd~--~~~~vii~D~---~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~------------~~ 86 (233)
T 3vol_A 24 IKSALDN--VSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK------------NP 86 (233)
T ss_dssp HHHHHTT--SSSEEEEEET---TSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSS------------SH
T ss_pred HHHHHhc--CCCcEEEECC---CCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcC------------CH
Confidence 3444444 8999999999 999999999999998 89999999999887742 22
Q ss_pred HHHHHHHHHHHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 112 VVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.....+.+.+. ..+..++. .+|. |+.+++.|+.|.+|.+.+++++++|||+++++++
T Consensus 87 ~~~~~~~~~~~--~~~~~~~~---~~g~--~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~ 143 (233)
T 3vol_A 87 AHQRHLLANLT--GVHKAELN---LGGR--RFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQ 143 (233)
T ss_dssp HHHHHHHHTCC--SCEEEEEE---ETTE--EEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHhcc--cceeEEEE---ECCE--EEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHH
Confidence 33333333221 23333332 3554 6789999999999999999999999999987765
No 61
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.98 E-value=9.6e-10 Score=111.08 Aligned_cols=108 Identities=17% Similarity=0.109 Sum_probs=86.6
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcc-eEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIE-FQGEL 131 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~ 131 (625)
..+.++..+. +|.++++|+++..++||+++|++|++..++. ||++.+.....+.+.+..++. ...++
T Consensus 277 ~~~fi~~~~~---dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~i---------HpdD~~~~~~~~~~~l~~~~~~~~~ey 344 (387)
T 4f3l_B 277 SMEYVSRHAI---DGKFVFVDQRATAILAYLPQELLGTSCYEYF---------HQDDIGHLAECHRQVLQTREKITTNCY 344 (387)
T ss_dssp CCEEEEEECT---TSBEEEECTHHHHHHCCCHHHHTTSBGGGTB---------CHHHHHHHHHHHHHHTTCSSCEECCCE
T ss_pred CceEEEEECC---CCEEEEECCCcccccCCCHHHHcCCcHHHee---------CHHHHHHHHHHHHHHHhcCCCeeeEEE
Confidence 4567777888 9999999999999999999999999887774 565655555555566655443 45689
Q ss_pred EEEeecCcceeEEEEEEEeeCC-CCCEEEEEEEEEeeecccc
Q 048754 132 LNFKKDGTPLVNRLRLAPIRDD-DGTVTHIIGIQIFSEAKID 172 (625)
Q Consensus 132 ~~~~~dG~~~~~~~~~~~~~d~-~g~~~~~i~~~~Dit~~~~ 172 (625)
+++++||..+|+.....++.+. .|.+..++++.+|||++|+
T Consensus 345 R~~~kdG~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 345 KFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp EEECTTSCEEEEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred EEEccCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 9999999999999999999887 7899999999999999974
No 62
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.97 E-value=1.3e-09 Score=88.70 Aligned_cols=89 Identities=19% Similarity=0.155 Sum_probs=65.1
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHH-hCcceEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE-EGIEFQG 129 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 129 (625)
+++++.|+++|. +|+|+++|+++++++||+++|++|++..++. ||++.+.... .+. .......
T Consensus 6 e~~~d~i~v~d~---~G~i~yvn~~~~~~lGy~~~el~G~~~~~~i---------hp~D~~~~~~----~~~~~~~~~~~ 69 (111)
T 2vlg_A 6 QTKTDIHAVLAS---NGRIIYISANSKLHLGYLQGEMIGSFLKTFL---------HEEDQFLVES----YFYNEHHLMPC 69 (111)
T ss_dssp ---CCEEEEECT---TSBEEEECTTHHHHHSCCHHHHTTSBGGGGB---------CGGGHHHHHH----HHHCSCCSSCE
T ss_pred hcCCCEEEEEcC---CCeEEEEChHHHHHhCCCHHHHcCCcHHHeE---------CHhHHHHHHH----HHhccCCCccE
Confidence 348899999999 9999999999999999999999999887774 4544443322 222 2333456
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCC
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDG 155 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g 155 (625)
+.+++++||+.+|+++++.++.+..+
T Consensus 70 e~r~~~kdG~~~wve~~~~~v~~~~~ 95 (111)
T 2vlg_A 70 TFRFIKKDHTIVWVEAAVEIVTTRAE 95 (111)
T ss_dssp EEEEECTTSCEEEEEEEEEEC-----
T ss_pred EEEEEcCCCCEEEEEEEEEEEecccC
Confidence 78889999999999999999987654
No 63
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.94 E-value=4.1e-09 Score=87.12 Aligned_cols=105 Identities=22% Similarity=0.194 Sum_probs=79.1
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (625)
.+.+++. ++++|+++|. +|+|+++|+++++++|+++++++|++..++.++ .........+.+.+..
T Consensus 14 ~~~il~~--~~~~i~~~D~---~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~---------~~~~~~~~~~~~~~~~ 79 (118)
T 3fg8_A 14 RENLYFQ--GGLGFMALDE---DLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPE---------TQGSYFDALCRKVLAT 79 (118)
T ss_dssp CCCSSSC--TTCEEEEECT---TCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGG---------GTTSHHHHHHHHHHHH
T ss_pred HHHHHhh--CCceEEEECC---CCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCc---------cchHHHHHHHHHHHHc
Confidence 4455555 9999999999 999999999999999999999999998877542 2233455666777778
Q ss_pred CcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecc
Q 048754 124 GIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 124 ~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~ 170 (625)
+.....++.....+| .|+.+.+.|+.+ | ++++++|||++
T Consensus 80 ~~~~~~~~~~~~~~g--~~~~~~~~p~~~--g----~v~~~~DITer 118 (118)
T 3fg8_A 80 GREQQTRVDSLYSPG--MTIEVTAAADSG--A----LVVHFRDVTAE 118 (118)
T ss_dssp CCCEEEEEECSSSTT--CEEEEEEEEETT--E----EEEEEEECSCC
T ss_pred CCceEEEEEEEcCCC--eEEEEEEEEcCC--c----EEEEEEeccCC
Confidence 887776432222355 578888888753 2 67889999975
No 64
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=98.90 E-value=4.1e-09 Score=90.97 Aligned_cols=115 Identities=16% Similarity=0.117 Sum_probs=86.9
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehH---HHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHH
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKV---FEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRC 120 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~---~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (625)
.+++++. .+++|+++|. +|+|+++|++ +++++| ..++++|++..++.+ .........+.+.
T Consensus 21 l~~IL~~--~~~gI~~vD~---~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~----------~~~~~~v~~i~~~ 84 (151)
T 2qkp_A 21 ANLILNH--LPLEITFVNK---DDIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHP----------PKVLDKVKKVFEL 84 (151)
T ss_dssp HHHHHHH--SSSEEEEEET---TSBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSC----------HHHHHHHHHHHHH
T ss_pred HHHHHHh--CCCceEEEcC---CCeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCC----------HHHHHHHHHHHHH
Confidence 3445555 9999999999 9999999999 999999 567899999877742 1122234556666
Q ss_pred HHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 121 LEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 121 ~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+.++.....+..... .+....+.++..|+.|++|.+.|++.+++|||+.+++++
T Consensus 85 l~~g~~~~~~~~~~~-~~~~~~v~v~~~Pi~d~~G~~~G~vev~~Dit~l~~le~ 138 (151)
T 2qkp_A 85 LRNGQRDKVNMWFQS-ERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDS 138 (151)
T ss_dssp HHTTSBSEEEEEEEE-TTTTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGG
T ss_pred HHcCCccEEEEEEec-CCCCeEEEEEEEEEECCCCCEEEEEEEEEECHHHHhhhh
Confidence 777776666555432 322346788899999989999999999999999887765
No 65
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.90 E-value=6.3e-09 Score=86.42 Aligned_cols=102 Identities=20% Similarity=0.251 Sum_probs=73.2
Q ss_pred ccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhC------------CCchhhcCCCCcccccCCcccccCCCCCChH
Q 048754 45 PGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTG------------YRADEVLGRNCRFLQYRDPRAQRRHPLVDPV 112 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G------------~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~ 112 (625)
+.+++. .+++|+++|. +|+|+++|+++++++| |++++++|++...+.. .+.
T Consensus 8 ~~il~~--~~~gviv~D~---~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~------------~~~ 70 (121)
T 4hi4_A 8 ASALDN--VSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK------------NPA 70 (121)
T ss_dssp HHHHTT--SSSEEEEEET---TCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCS------------SHH
T ss_pred HHHHhc--CCccEEEEcC---CCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcC------------CHH
Confidence 344444 8999999999 9999999999999995 8999999998877742 222
Q ss_pred HHHHHHHHHHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecc
Q 048754 113 VVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 113 ~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~ 170 (625)
....+.+... ..+..++. .+|. ++.+.+.|+.+.+|.+.+++.+++|||++
T Consensus 71 ~~~~~~~~~~--~~~~~~~~---~~~~--~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 71 HQRHLLANLT--GVHKAELN---LGGR--RFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp HHHHHHHHCS--SCEEEEEE---ETTE--EEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred HHHHHHhCcC--CCcEEEEE---ECCE--EEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 2222222221 23333332 2454 55788999999999999999999999974
No 66
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=98.90 E-value=1.6e-08 Score=99.24 Aligned_cols=160 Identities=12% Similarity=0.097 Sum_probs=101.4
Q ss_pred EEec-CCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcce---------
Q 048754 58 VVAD-AFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEF--------- 127 (625)
Q Consensus 58 ~~~d-~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 127 (625)
++++ . +|+|+++|+++.+++||+++|++|++..++.+ |++ ...+...+..+.++
T Consensus 7 ~vv~~~---~G~i~yvS~~~~~~LGy~~~el~G~s~~d~ih---------p~D----~~~f~~~L~~gl~~~~~~~~~~~ 70 (339)
T 3rty_A 7 CVISMH---DGIVLYTTPSITDVLGYPRDMWLGRSFIDFVH---------LKD----RATFASQITTGIPIAESRGSVPK 70 (339)
T ss_dssp EEEETT---TCBEEEECTTHHHHHCCCTTSSTTSBGGGGBC---------HHH----HHHHHHHHHTTSCCC--------
T ss_pred EEEECC---CcEEEEEChHHHHHcCCCHHHHCCCcHHHhcC---------HHH----HHHHHHHHhcCCCCCccccCCCC
Confidence 4455 6 99999999999999999999999999888853 333 33345555444322
Q ss_pred ---EEEEEEEe----------------ecCcceeEEEEEEEeeCC---------CCCEEEEEEEEEeeecccccCCcchh
Q 048754 128 ---QGELLNFK----------------KDGTPLVNRLRLAPIRDD---------DGTVTHIIGIQIFSEAKIDLNHVSYP 179 (625)
Q Consensus 128 ---~~e~~~~~----------------~dG~~~~~~~~~~~~~d~---------~g~~~~~i~~~~Dit~~~~~e~~~~~ 179 (625)
..-.++.+ +...++|+.....++.++ .|....++.++++++...+...
T Consensus 71 ~~rsffcR~~rr~~~l~s~gy~v~~~~~~~~p~~l~~~~~~~~~e~~~~~~~~~~g~~~~lv~~a~~i~s~~~~p~---- 146 (339)
T 3rty_A 71 DAKSTFCVMLRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPD---- 146 (339)
T ss_dssp --CCEEEEEEECCC-------------CCEEEEEEEEEEEECCCC----------CCCEEEEEEEEECCCSCSSTT----
T ss_pred CCceEEEEEEeccCCCCcCCcceecccccceeEEEEEEEeccccccccccccccCCceEEEEEEcccCCccccccc----
Confidence 01111111 111233444444555444 4566677888888875432211
Q ss_pred hhhhhhcccccccccc--ccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhHHHH
Q 048754 180 VFKENCNQQYDQSAQY--FSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVCRR 242 (625)
Q Consensus 180 ~~~~~~~~~~~~~~~~--~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~~~ 242 (625)
+ +.. ......+ .+.++.++|+|+++.+++||+ +|++|..+++++||+|+..+....++
T Consensus 147 ---e-~~~-~~~~~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~ 207 (339)
T 3rty_A 147 ---E-ILS-QKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYET 207 (339)
T ss_dssp ---B-BCC-SSCCEEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHH
T ss_pred ---h-hhc-cCCceEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHH
Confidence 0 100 1111122 256667779999999999999 99999999999999998877544433
No 67
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.87 E-value=3.4e-09 Score=107.02 Aligned_cols=169 Identities=11% Similarity=0.080 Sum_probs=98.0
Q ss_pred CCCeeEEEecCCCCC-CCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHH---------
Q 048754 52 TTPTSFVVADAFDPD-FPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCL--------- 121 (625)
Q Consensus 52 ~~~~~i~~~d~~~~~-g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 121 (625)
+.+..+++++. + |+|+|+|++++.++||+++|++|++..++. ||++...+.+.+....
T Consensus 94 ~~~gfi~v~~~---~~G~i~yvs~~~~~~lG~~~~el~g~~~~~~i---------hp~D~~~~~~~L~~~~~~p~~~~~~ 161 (387)
T 4f3l_B 94 AADGFLFVVGC---DRGKILFVSESVFKILNYSQNDLIGQSLFDYL---------HPKDIAKVKEQLSSSDTAPRERLID 161 (387)
T ss_dssp TCCSEEEEEET---TTCBEEEECTTHHHHHSCCHHHHTTSBGGGGB---------CGGGHHHHHHHHSCC----------
T ss_pred cCCCEEEEEec---CCeEEEEEchhhHHHcCCCHHHHCCCcHHHhc---------CCCCHHHHHHHhcccccCccccccC
Confidence 37788888887 7 999999999999999999999999988885 4555544443332111
Q ss_pred -HhCc-------------------ceEEEEEEEe-------------------ecCcceeEEEEEEEeeC----------
Q 048754 122 -EEGI-------------------EFQGELLNFK-------------------KDGTPLVNRLRLAPIRD---------- 152 (625)
Q Consensus 122 -~~~~-------------------~~~~e~~~~~-------------------~dG~~~~~~~~~~~~~d---------- 152 (625)
.++. .+..+++... ++....++.+.......
T Consensus 162 ~~tg~~~~~e~~~~~~~~~~g~~rsF~cRmr~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~G~l~~~~~~~~~~~~~ 241 (387)
T 4f3l_B 162 AKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFASTCSKKKADRKSFCTIHSTGYLKSWPPTKMGLDED 241 (387)
T ss_dssp ----------------CCCGGGEEEEEEEEECSCC-------------------CCSEEEEEEEEEEEC-----------
T ss_pred cccCCccCCCCCCcccccccCCceeEEEeeecccCCcccccccccccccccccCCCceEEEEEEEEEecccccccccccc
Confidence 1111 1111221111 11222233332211110
Q ss_pred -----CCCCEEEEEEEEEeeecccccCCcchhhhhhhhcccccccccc--ccCCCCCCcccccccccccCc-hhHHHHhh
Q 048754 153 -----DDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYDQSAQY--FSGGHSPLSQHQDICGILQLS-DEVLAHNI 224 (625)
Q Consensus 153 -----~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~ 224 (625)
..+...+++++++++........ ..+ +. ......+ .+.+..++|+|++++.++||+ +|++|..+
T Consensus 242 ~~~~~~~~~~~~lvai~r~~~~~~~~~~-----~~e-i~--~~~~~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~ 313 (387)
T 4f3l_B 242 NEPDNEGCNLSCLVAIGRLHSHMVPQPA-----NGE-IR--VKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSC 313 (387)
T ss_dssp --------CCCEEEEEEEECCCSCCSCC-----CSS-SC--BCCCEEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBG
T ss_pred cccccCCCcceEEEEEEecccCCCCCCc-----ccc-cc--cCCceEEEEECCCCEEEEECCCcccccCCCHHHHcCCcH
Confidence 01123356777777553321100 000 00 0111112 256677779999999999999 89999999
Q ss_pred hcccCchhhhhHHhHH
Q 048754 225 LSRLTPRDVASIGSVC 240 (625)
Q Consensus 225 ~~~~~~~~~~~~~~~~ 240 (625)
.+++||+|+..+....
T Consensus 314 ~~~iHpdD~~~~~~~~ 329 (387)
T 4f3l_B 314 YEYFHQDDIGHLAECH 329 (387)
T ss_dssp GGTBCHHHHHHHHHHH
T ss_pred HHeeCHHHHHHHHHHH
Confidence 9999999988764433
No 68
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.87 E-value=4.1e-09 Score=87.74 Aligned_cols=105 Identities=12% Similarity=0.053 Sum_probs=72.4
Q ss_pred eecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHH-HHHHHH
Q 048754 42 SLKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVV-SEIRRC 120 (625)
Q Consensus 42 ~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~ 120 (625)
++.+.+++. ++++|+++|. +|+|+++|+++++++|+++++++|++..++.+ . ...... ......
T Consensus 19 ~~~~~i~~~--~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~-~---------~~~~~~~~~~~~~ 83 (125)
T 3fc7_A 19 KKFESLVSD--SPDGIVHLTT---NGTILSVNPSMAGRLGADPDTLVGQQLSAVMD-S---------EAANQRLEAGKSA 83 (125)
T ss_dssp -------CC--SCCEEEEEET---TSBEEEECHHHHHHHTSCHHHHTTSBGGGSSC-H---------HHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCCeEEEEcC---CCeEEEECHHHHHHhCCCHHHHcCccHHHhCC-H---------HHHHHHHHHHHHH
Confidence 344455555 9999999999 99999999999999999999999999887752 1 111122 222344
Q ss_pred HHhCcceEEEEEEEeecCc-ceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 121 LEEGIEFQGELLNFKKDGT-PLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 121 ~~~~~~~~~e~~~~~~dG~-~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
...+... ..++|. ..|+.+.+.|+.+. |...+++++++|||
T Consensus 84 ~~~~~~~------~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 84 VENGTAT------RSEDAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT 125 (125)
T ss_dssp HHHTSCE------EEEEEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred hcCCCeE------EeEcCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence 4444433 233455 78999999998765 55678899999997
No 69
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.85 E-value=2.8e-09 Score=87.44 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=72.4
Q ss_pred CCeeEEEecCCCCC-CCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHH-HHh-Ccce--
Q 048754 53 TPTSFVVADAFDPD-FPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRC-LEE-GIEF-- 127 (625)
Q Consensus 53 ~~~~i~~~d~~~~~-g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-- 127 (625)
.+++|+++|. + |+|+++|+++++++||+++|++|++..++.++ . .......+... +.. +...
T Consensus 7 ~~~~i~~~d~---~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~---------~-~~~~~~~~~~~~~~~~~~~~~~ 73 (114)
T 1ll8_A 7 FNKAIFTVDA---KTTEILVANDKACGLLGYSSQDLIGQKLTQFFLR---------S-DSDVVEALSEEHMEADGHAAVV 73 (114)
T ss_dssp TTCEEEEEET---TTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSC---------T-TTHHHHHTTSSTTSSSSCSSCC
T ss_pred CCceEEEEEC---CCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCc---------c-hhHHHHHHHHHhhccCCcceec
Confidence 5579999999 9 99999999999999999999999998877542 1 12222222111 111 1111
Q ss_pred -EEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 128 -QGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 128 -~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
..+...+++||+.+|+.+++.|+.+..+ ..++++++|++
T Consensus 74 ~~~~~~~~~~dG~~~~v~~~~~~~~~~~~--~~~v~~~~~~~ 113 (114)
T 1ll8_A 74 FGTVVDIISRSGEKIPVSVWMKRMRQERR--LCCVVVLEPVE 113 (114)
T ss_dssp CSSSEEECCTTCCCEEEECCEECCBSSSS--BEEEEEEEECC
T ss_pred cCcEEEEEecCCCEEEEEEEEEeeccCCc--cEEEEEEeecC
Confidence 2345677899999999999999986554 35788888876
No 70
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.83 E-value=9.1e-09 Score=103.10 Aligned_cols=167 Identities=11% Similarity=-0.042 Sum_probs=99.2
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCc-------
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGI------- 125 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 125 (625)
.+..+++++. +|+|+++|+++.+++||+++|++|++..++. ||++.......+......+.
T Consensus 95 ~~~~i~v~~~---~G~i~yvs~~~~~~lGy~~~el~g~~~~~~i---------hp~D~~~~~~~l~~~~~~~~~~~~~~~ 162 (361)
T 4f3l_A 95 LDGFFLAIMT---DGSIIYVSESVTSLLEHLPSDLVDQSIFNFI---------PEGEHSEVYKILSTHLLESDSLTPEYL 162 (361)
T ss_dssp TTEEEEEEET---TSBEEEECTTHHHHHCCCHHHHTTSBGGGGS---------CGGGHHHHHHHHHHCCCCCCSSSCGGG
T ss_pred cCceEEEEcC---CccEEEEechhhhhcCCCHHHhcCCcHHHhc---------CHHHHHHHHHHhccCCCCCCCCCcccc
Confidence 7888899999 9999999999999999999999999988774 45555554444443221111
Q ss_pred ----ceEEEEEEEee------cCcceeEEEEEEEee---------------------CCCCCEEEEEEEEEeeecccccC
Q 048754 126 ----EFQGELLNFKK------DGTPLVNRLRLAPIR---------------------DDDGTVTHIIGIQIFSEAKIDLN 174 (625)
Q Consensus 126 ----~~~~e~~~~~~------dG~~~~~~~~~~~~~---------------------d~~g~~~~~i~~~~Dit~~~~~e 174 (625)
......++.+. .....++........ ...+...+++++.++++.+...+
T Consensus 163 ~~~~~~~f~cr~~~~~~~~~~~~~y~~i~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lvai~r~~~~~~~~e 242 (361)
T 4f3l_A 163 KSKNQLEFCCHMLRGTIDPKEPSTYEYVRFIGNFKSLTSVSTSTHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIKE 242 (361)
T ss_dssp CGGGEEEEEEEEECCCSCSSSCCCEEEEEEEEEEEECC------------------------CEEEEEEEEESSCCSSEE
T ss_pred cccCceeEEEEEeccCCCCCCCCceEEEEEEEEEEeccCCCcccccCcccccccccCccCCCceEEEEEEecCCCCcccc
Confidence 01111111111 111122222111110 11122345666777766553221
Q ss_pred Ccchhhhhhhhccccccccc--cccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhHH
Q 048754 175 HVSYPVFKENCNQQYDQSAQ--YFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVC 240 (625)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~ 240 (625)
.. . +. ...... ..+.+..++|+|++++.++||+ +|++|..+.+++||+|...+....
T Consensus 243 ~~---~----i~--~~~~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~ 302 (361)
T 4f3l_A 243 MC---T----VE--EPNEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCH 302 (361)
T ss_dssp EC---S----CS--SSCCEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHH
T ss_pred cc---c----cc--CCcceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHH
Confidence 10 0 00 011111 2256677779999999999999 899999999999999988765443
No 71
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.82 E-value=7e-09 Score=85.05 Aligned_cols=104 Identities=16% Similarity=0.219 Sum_probs=78.0
Q ss_pred cccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCc
Q 048754 46 GLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGI 125 (625)
Q Consensus 46 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (625)
.+++. .+++++++|. +|+|+++|+++++++|+++++++|++..++..+. . .....+.+.+..+.
T Consensus 11 ~il~~--~~~~i~~~D~---~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~---------~--~~~~~~~~~~~~~~ 74 (115)
T 3b33_A 11 AILNN--MVTATLILDD---GLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHA---------S--LDLALLTQPLQSGQ 74 (115)
T ss_dssp HHHHH--CSSEEEEECT---TCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEE---------E--CCTHHHHHHHHHCC
T ss_pred HHHhh--cCceEEEECC---CCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCcc---------c--hhhHHHHHHHHcCC
Confidence 34455 8999999999 9999999999999999999999999877764311 1 11223444555555
Q ss_pred ce-EEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 126 EF-QGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 126 ~~-~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
.. ..+.... ++|+.+|+.+.+.|+.+ +|. .+++.+++||+
T Consensus 75 ~~~~~~~~~~-~~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 75 SITDSDVTFV-VDGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp CEEEEEEEEE-ETTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred cccCCceEEe-cCCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 43 3455555 78998999999999988 775 57888899985
No 72
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.69 E-value=3.5e-08 Score=98.83 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=85.2
Q ss_pred eecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHH
Q 048754 42 SLKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCL 121 (625)
Q Consensus 42 ~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (625)
++.+.+++. ++++|+++|. +|+|+++|+++++++||++++++|++..++.. .........+.+
T Consensus 8 ~~~~~i~~~--~~~~i~~~d~---~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~------------~~~~~~~~~~~~ 70 (349)
T 3a0r_A 8 NFSESILES--LETAIITLSK---DGRITEWNKKAEQLFGLKKENVLGRRLKDLPD------------FEEIGSVAESVF 70 (349)
T ss_dssp -CCCSSGGG--SSSEEEEEES---SSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTT------------TTHHHHHHHHHH
T ss_pred HHHHHHHhh--hcCeEEEECC---CCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcC------------hhHHHHHHHHHH
Confidence 345566666 9999999999 99999999999999999999999998877732 222333444455
Q ss_pred HhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCE-EEEEEEEEeeecccccCCcch
Q 048754 122 EEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTV-THIIGIQIFSEAKIDLNHVSY 178 (625)
Q Consensus 122 ~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~-~~~i~~~~Dit~~~~~e~~~~ 178 (625)
..+.....+. ..+...|+.+.+.|+.+..+.. .+++++.+|||+++++++...
T Consensus 71 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~~~~ 124 (349)
T 3a0r_A 71 ENKEPVFLNF----YKFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERK 124 (349)
T ss_dssp HHCCCCEEEC----CCBTTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTT
T ss_pred hcCCceeecc----cccCceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHHHHHH
Confidence 5555443221 1223457888999998887765 588999999999998876443
No 73
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.67 E-value=3.4e-07 Score=71.17 Aligned_cols=94 Identities=19% Similarity=0.066 Sum_probs=70.0
Q ss_pred CeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEEE
Q 048754 54 PTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLN 133 (625)
Q Consensus 54 ~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 133 (625)
+++|+++|. +|+|+++|+++++++|+++++++|++..++ . ........+.+.+..+..... .
T Consensus 2 ~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~--~- 63 (96)
T 3a0s_A 2 ETAIITLSK---DGRITEWNKKAEQLFGLKKENVLGRRLKDL-P-----------DFEEIGSVAESVFENKEPVFL--N- 63 (96)
T ss_dssp CCEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGS-T-----------TCHHHHHHHHHHHHHTCCEEE--E-
T ss_pred CceEEEEcC---CCCEeehhHHHHHHhCCCHHHhcCCCHHHC-c-----------chHHHHHHHHHHhccCCeEEE--E-
Confidence 678999999 999999999999999999999999987766 2 123344445555555555432 2
Q ss_pred EeecCcceeEEEEEEEeeCCCCC-EEEEEEEEEe
Q 048754 134 FKKDGTPLVNRLRLAPIRDDDGT-VTHIIGIQIF 166 (625)
Q Consensus 134 ~~~dG~~~~~~~~~~~~~d~~g~-~~~~i~~~~D 166 (625)
..++...|+.+.+.|+.+.+|. +.+++++.+|
T Consensus 64 -~~~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 64 -FYKFGERYFNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp -EEEETTEEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred -EEcCCcEEEEEEEEEeEcCCCCeeeEEEEEecC
Confidence 2245567899999999987654 6788888766
No 74
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.61 E-value=7.4e-07 Score=72.57 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=72.1
Q ss_pred ccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC
Q 048754 45 PGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG 124 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (625)
+.+++. .++|++++|. +|+|+++|.++++++|+++++++|+++.++..+. .....+...+.+.+.++
T Consensus 25 ~~~ld~--l~~GiivlD~---dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~--------~~~~~f~grf~~~~~~G 91 (129)
T 1mzu_A 25 TAEFDA--LPVGAIQVDG---SGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPC--------TNIPAFSGRFMDGVTSG 91 (129)
T ss_dssp CTTGGG--CSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGG--------GCSTTTHHHHHHHHHTS
T ss_pred HHHHhc--cCceEEEECC---CCeEEEEHHHHHHHhCCCHHHHcCCchhhhccch--------hcccHHHHHHHHHHhcC
Confidence 334445 8999999999 9999999999999999999999999986543211 23445566777777766
Q ss_pred cceEEEEEE-EeecCcceeEEEEEEEeeCCCCCEEEE
Q 048754 125 IEFQGELLN-FKKDGTPLVNRLRLAPIRDDDGTVTHI 160 (625)
Q Consensus 125 ~~~~~e~~~-~~~dG~~~~~~~~~~~~~d~~g~~~~~ 160 (625)
. +..+... .+++|++.. +.+....+.+|...++
T Consensus 92 ~-l~~~~~yv~~~~~~p~~--v~i~l~~~~~~~~~~i 125 (129)
T 1mzu_A 92 T-LDARFDFVFDFQMAPVR--VQIRMQNAGVPDRYWI 125 (129)
T ss_dssp C-CEEEEEEEEECSSCEEE--EEEEEEECSSTTEEEE
T ss_pred c-eeEEEEEEEcCCCCEEE--EEEEEEEcCCCCEEEE
Confidence 5 5555444 488888554 5555556677766544
No 75
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.59 E-value=8.8e-08 Score=96.02 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=87.3
Q ss_pred ccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC
Q 048754 45 PGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG 124 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (625)
++++.. .+++|+++|. +|+|+++|++ ++++ +++++++|+++.++.+ .........+.+.+.++
T Consensus 242 ~~IL~~--l~dgIivvD~---~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p----------~~~~~~~~~l~~~l~~g 304 (369)
T 3cax_A 242 KAIFEA--LPVDVTFIDK---DDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHP----------PKSVYVVNKILKAFKEG 304 (369)
T ss_dssp HHHHHH--SSSEEEEECT---TSBEEEECCS-SCSS-CCCGGGTTCBTTTSSC----------GGGHHHHHHHHHHHHHT
T ss_pred HHHHHh--CCCcEEEECC---CCcEEEEcCH-HHcc-CChHHHcCCcHHHHCC----------hhhHHHHHHHHHHHHcC
Confidence 345555 8999999999 9999999999 9999 8999999999887743 22233445566677777
Q ss_pred cceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 125 IEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 125 ~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.....+.... .+| .++.++..|++|.+|.+.|++.+++|||+.+++++
T Consensus 305 ~~~~~~~~~~-~~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~le~ 352 (369)
T 3cax_A 305 RKKEATFWLR-LRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIEG 352 (369)
T ss_dssp SCSCEEEEEE-ETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCCS
T ss_pred CceEEEEEEe-eCC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHHH
Confidence 7655554433 455 47888999999999999999999999999988765
No 76
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=98.58 E-value=2.5e-07 Score=90.67 Aligned_cols=107 Identities=12% Similarity=0.099 Sum_probs=87.8
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcc-----e
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIE-----F 127 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 127 (625)
..+.++..+. +|.++++|+++..++||+++|++|++..++. ||++.+.....+.+.+..|.. .
T Consensus 153 ~~~fi~r~~~---dG~~~yvn~~~~~lLGY~peELiG~s~~~~v---------HPdD~~~~~~~~~~~l~~G~~~~~~~~ 220 (339)
T 3rty_A 153 SPKFAIRHTA---TGIISHVDSAAVSALGYLPQDLIGRSIMDFY---------HHEDLSVMKETYETVMKKGQTAGASFC 220 (339)
T ss_dssp CCEEEEEEET---TCBEEEECTTHHHHHCCCHHHHTTSBGGGGB---------CGGGHHHHHHHHHHHHHHTTSTTCCCB
T ss_pred CceEEEEECC---CCeEEEcChhhhcccCCCHHHHcCCcHHHEE---------CHHHHHHHHHHHHHHHHcCCccccccc
Confidence 4667888888 9999999999999999999999999888774 566666666667777776664 2
Q ss_pred EEEEEEEeecCcceeEEEEEEEeeCCC-CCEEEEEEEEEeeeccc
Q 048754 128 QGELLNFKKDGTPLVNRLRLAPIRDDD-GTVTHIIGIQIFSEAKI 171 (625)
Q Consensus 128 ~~e~~~~~~dG~~~~~~~~~~~~~d~~-g~~~~~i~~~~Dit~~~ 171 (625)
..+++++++||..+|++....++.|.. +.+..++++-+.++...
T Consensus 221 s~~yR~~~kdG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p~ 265 (339)
T 3rty_A 221 SKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPK 265 (339)
T ss_dssp CCCEEEECTTSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECCS
T ss_pred ceEEEEEccCCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCCC
Confidence 468899999999999999999998764 56778888888888653
No 77
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.55 E-value=4.4e-07 Score=87.98 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=82.8
Q ss_pred eeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcc---eEEEE
Q 048754 55 TSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIE---FQGEL 131 (625)
Q Consensus 55 ~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~ 131 (625)
.-+...+. +|.++++|+++..++||.++|++|++..++. ||++.+...+.+.+.+..++. ...++
T Consensus 175 ~Fitrh~~---dG~~~yvs~~~~~lLGY~peELig~s~~~~v---------HPdD~~~~~~~~~~~l~~~~~~~f~s~~y 242 (317)
T 4dj3_A 175 IFTTTHTP---GCVFLEVDERAVPLLGYLPQDLIGTSILTYL---------HPEDRPLMVAIHQKVLKYAGHPPFEHSPV 242 (317)
T ss_dssp EEEEEECT---TSBEEEECTTHHHHHSCCHHHHTTSBGGGGB---------CTTTTTHHHHHHHHHHHTTTSCCEECCCE
T ss_pred ceEEEecC---CCeEEEEChHHhhhcCcChHHHcCCCHHHeE---------CHHHHHHHHHHHHHHHHcCCCccccceEE
Confidence 44555677 9999999999999999999999999888774 677777777777777776554 34688
Q ss_pred EEEeecCcceeEEEEEEEeeCC-CCCEEEEEEEEEeeecc
Q 048754 132 LNFKKDGTPLVNRLRLAPIRDD-DGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 132 ~~~~~dG~~~~~~~~~~~~~d~-~g~~~~~i~~~~Dit~~ 170 (625)
|++++||...|++....++.+. .+++..++++-+-++..
T Consensus 243 R~~~kdG~~vwvet~~~~~~np~s~~~e~II~~h~v~~~p 282 (317)
T 4dj3_A 243 RFCTQNGEYVILDSSWSSFVNPWSRKVSFIIGRHKVRTSP 282 (317)
T ss_dssp EEECTTSCEEEEEEEEEEEECSSSCCEEEEEEEEEECCCC
T ss_pred EEEccCCCEEEEEEEEEEEECCCCCcccEEEEEEEeccCC
Confidence 9999999999999999998876 45666777776655544
No 78
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.51 E-value=1.4e-06 Score=70.85 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=70.7
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
.+..++|++++|. +|+|+++|+++++++|+++++++|+++.+...+. .....+...+.+.+.++. +..
T Consensus 23 ld~l~~Gii~lD~---~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~--------~~~~~f~~rf~~~~~~g~-l~~ 90 (125)
T 1nwz_A 23 LDGLAFGAIQLDG---DGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPC--------TDSPEFYGKFKEGVASGN-LNT 90 (125)
T ss_dssp HTTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGG--------GCSTTTHHHHHHHHHHTC-CEE
T ss_pred HhccCceEEEECC---CCEEEEEHHHHHHHhCCCHHHHcCCchhhhccch--------hcccHHHHHHHHHHhcCc-eeE
Confidence 4449999999999 9999999999999999999999999986543211 234455667777777666 554
Q ss_pred EEEE-EeecCcceeEEEEEEEeeCCCCCEEEE
Q 048754 130 ELLN-FKKDGTPLVNRLRLAPIRDDDGTVTHI 160 (625)
Q Consensus 130 e~~~-~~~dG~~~~~~~~~~~~~d~~g~~~~~ 160 (625)
+... .+++|++..+ .+....+.+|...++
T Consensus 91 ~~~~v~~~~~~p~~v--~i~l~~~~~~~~~~i 120 (125)
T 1nwz_A 91 MFEYTFDYQMTPTKV--KVHMKKALSGDSYWV 120 (125)
T ss_dssp EEEEEECTTSCCEEE--EEEEEECSSSSEEEE
T ss_pred EEEEEEcCCCCEEEE--EEEEEEcCCCCEEEE
Confidence 5444 4888986655 455556667766544
No 79
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.42 E-value=9.7e-07 Score=85.57 Aligned_cols=167 Identities=10% Similarity=-0.003 Sum_probs=94.0
Q ss_pred cCCCCeeEEEecCCCCC-CCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHH--------
Q 048754 50 YPTTPTSFVVADAFDPD-FPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRC-------- 120 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~-g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------- 120 (625)
.++...-+++++. + |+|+|+|++..+++||+++|++|++..++. ||++...+..++...
T Consensus 32 L~aldgF~~vvs~---~~G~i~yvS~~~~~~Lg~~~~el~g~s~~d~i---------hp~D~~~f~~ql~~~~lP~~~~~ 99 (317)
T 4dj3_A 32 SKNTDTFAAVFSF---LSGRLVHISEQAALILNSKRGFLKSVHFVDLL---------APQDVRAFYAHTAPTQLPFWNNW 99 (317)
T ss_dssp TSCTTEEEEEEET---TTCBEEEECTTHHHHTTCCHHHHHTSBGGGGB---------CGGGHHHHHHHTCTTTCCCCC--
T ss_pred HhccCCEEEEEEc---CCcEEEEECCHHHHHcCCCHHHHcCCchhhhc---------ChhhHHHHHHhhcccCCCCcCCC
Confidence 3335555667776 5 999999999999999999999999988884 455555444432000
Q ss_pred ------HH--hCcceEEEEEEEeecC----cceeEEEEEEE--eeC---CCCCEEEEEEEEEeeecccccCCcchhhhhh
Q 048754 121 ------LE--EGIEFQGELLNFKKDG----TPLVNRLRLAP--IRD---DDGTVTHIIGIQIFSEAKIDLNHVSYPVFKE 183 (625)
Q Consensus 121 ------~~--~~~~~~~e~~~~~~dG----~~~~~~~~~~~--~~d---~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~ 183 (625)
.. ....+-. |+++.-+ ....+...... +.. .++....++.+.+-.+..+..+ +
T Consensus 100 ~~~~~~~~~~~~rsF~C--Rmr~g~~~~~~~y~~~~~~g~l~~~~~~~~~~~~~~clv~v~~~~~~~~~~~--------~ 169 (317)
T 4dj3_A 100 TQRASQYECAPAKPFFC--RICGGGDREKRHYSPFRILPYLVHVHSSAQPEPEPCCLTLVEKIHSGYEAPR--------I 169 (317)
T ss_dssp --------CCCCCCEEE--EECCCCCSSSCCCEEEEEEEEEEECCCCSSSCSCEEEEEEEEECCCTTSSSC--------C
T ss_pred cccccccCCCCCceEEE--EEeCCCCCCCCceEEEEEEeEEEeccCCCCCCCCceEEEEEEecCCCcCCCC--------c
Confidence 00 0111112 2222111 12233322211 110 1122233333322222211110 0
Q ss_pred hhccccccccccc--cCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhHHHH
Q 048754 184 NCNQQYDQSAQYF--SGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVCRR 242 (625)
Q Consensus 184 ~~~~~~~~~~~~~--~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~~~ 242 (625)
. ......+. +.+..++|+|+++.+++||. +|++|..+++++||+|+..+....++
T Consensus 170 ~----~~~~~Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~ 227 (317)
T 4dj3_A 170 P----VDKRIFTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQK 227 (317)
T ss_dssp C----GGGCEEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHH
T ss_pred c----cCCCceEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHH
Confidence 0 01111222 45666679999999999999 99999999999999998877555544
No 80
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.42 E-value=7.7e-07 Score=86.02 Aligned_cols=170 Identities=10% Similarity=0.035 Sum_probs=83.8
Q ss_pred cCCCCeeEEEecCCCCC-CCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHH---------
Q 048754 50 YPTTPTSFVVADAFDPD-FPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRR--------- 119 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~-g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------- 119 (625)
.++...-+++++. + |+|+|+++++..++||+++|++|++..++. ||++...+...+..
T Consensus 21 l~a~dgF~~vvs~---~~G~i~yvS~s~~~~Lg~~~~el~g~s~~d~i---------Hp~D~~~~~~~L~~~~lp~~~~~ 88 (309)
T 3gdi_A 21 VKNADMFAVAVSL---VSGKILYISNQVASIFHCKKDAFSDAKFVEFL---------APHDVSVFHSYTTPYKLPPWSVC 88 (309)
T ss_dssp --CTTEEEEEECT---TTCBEEEECTTTTTTC-------CCSBGGGGB---------CTTTHHHHHHHTCTTSSCBCC--
T ss_pred HHhcCCEEEEEEC---CCceEEEECCHHHHHcCCCHHHHcCCchhhcc---------CHhHHHHHHHhccccCCCCcccc
Confidence 3445666677776 6 999999999999999999999999988885 45554444433310
Q ss_pred ----H----HHhCcceEEEEEEEe-ecC--cceeEEEEEE--EeeCCCCC--EEEEEEEEEeeecccccCCcchhhhhhh
Q 048754 120 ----C----LEEGIEFQGELLNFK-KDG--TPLVNRLRLA--PIRDDDGT--VTHIIGIQIFSEAKIDLNHVSYPVFKEN 184 (625)
Q Consensus 120 ----~----~~~~~~~~~e~~~~~-~dG--~~~~~~~~~~--~~~d~~g~--~~~~i~~~~Dit~~~~~e~~~~~~~~~~ 184 (625)
. ......+..+++... ++. ...++.+... .+.+.+|. ....+.++.-+.-- .+. . ++
T Consensus 89 ~~~~~~~~~~~~~rsF~CRmr~~~~~~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~lv~~a~~~~s~--~~~-p----~~- 160 (309)
T 3gdi_A 89 SGLDSFTQECMEEKSFFCRVSVGKHHENEIRYQPFRMTPYLVKVQEQQGAESQLCCLLLAERVHSG--YEA-P----RI- 160 (309)
T ss_dssp ------------CCCEEEEECCCC----CCCCEEEEEEEEEEECC--------EEEEEEEEECCCT--TSS-S----CC-
T ss_pred cCccccccccCCceeEEEEEEccccCCCccceEEEEEEeeeccccCCCCCcCccEEEEEEEecCCC--ccC-C----Cc-
Confidence 0 000112222222110 011 1222232222 12233332 22222222211100 000 0 00
Q ss_pred hccccccccccc--cCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhHHHH
Q 048754 185 CNQQYDQSAQYF--SGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVCRR 242 (625)
Q Consensus 185 ~~~~~~~~~~~~--~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~~~ 242 (625)
..+....+. +.+..++|+|+++.+++||. +|++|..+++++||+|+..+....++
T Consensus 161 ---~~~~~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~ 218 (309)
T 3gdi_A 161 ---PPEKRIFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKK 218 (309)
T ss_dssp ---CGGGCEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHH
T ss_pred ---CCCCceEEEEecCCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHH
Confidence 001111122 55666779999999999999 99999999999999998877554444
No 81
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.33 E-value=3e-06 Score=81.84 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=82.7
Q ss_pred eeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcc-eE-EEEE
Q 048754 55 TSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIE-FQ-GELL 132 (625)
Q Consensus 55 ~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~e~~ 132 (625)
.-+...+. +|.++++|+++..++||.++|++|++..++. ||++.....+.+.+.+..++. .. .++|
T Consensus 166 ~Fitrh~~---dG~~~yvd~~~~~lLGY~peELig~s~~~~i---------HpdD~~~~~~~~~~~l~~~g~~~~~~~yR 233 (309)
T 3gdi_A 166 IFTTTHTP---NCLFQAVDERAVPLLGYLPQDLIETPVLVQL---------HPSDRPLMLAIHKKILQAGGQPFDYSPIR 233 (309)
T ss_dssp EEEEEECT---TCBEEEECTTHHHHHSCCHHHHTTSBHHHHB---------CTTSHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred eEEEEecC---CCeEEEECcccccccCcCHHHHcCCCHHHhC---------CHHHHHHHHHHHHHHHhcCCceeeceEEE
Confidence 35566677 9999999999999999999999999887774 566666666666666765443 44 5899
Q ss_pred EEeecCcceeEEEEEEEeeCC-CCCEEEEEEEEEeeecc
Q 048754 133 NFKKDGTPLVNRLRLAPIRDD-DGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~-~g~~~~~i~~~~Dit~~ 170 (625)
++++||...|++....++.+. .+++..++++-+.++.-
T Consensus 234 ~~~kdG~~vwvet~~~~~~np~s~~~e~ii~~h~v~~gp 272 (309)
T 3gdi_A 234 FRTRNGEYITLDTSWSSFINPWSRKISFIIGRHKVRVGP 272 (309)
T ss_dssp EECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEECC
T ss_pred EEccCCCEEEEEEEEEEEECCCCCcccEEEEEEEEccCC
Confidence 999999999999998888765 56777888887777754
No 82
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.31 E-value=3.6e-06 Score=81.63 Aligned_cols=167 Identities=14% Similarity=0.063 Sum_probs=89.1
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHH------------
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRC------------ 120 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------ 120 (625)
...-++++.. .+|+|+|+|+.+.+++||+++|++|++..++.+ |++...+..++...
T Consensus 35 ldGF~~vvs~--~~G~i~yvS~sv~~~Lg~~~~~l~g~s~~d~iH---------p~D~~~f~~qL~~~~lp~~~~~~~~~ 103 (320)
T 4dj2_A 35 QDTFSVAVSF--LTGRIVYISEQAGVLLRCKRDVFRGARFSELLA---------PQDVGVFYGSTTPSRLPTWGTGTSAG 103 (320)
T ss_dssp SSEEEEEEET--TTCBEEEECTHHHHHHTSCSTTTTTSBGGGGBC---------HHHHHHHHHHCCTTTCCBTTC-----
T ss_pred cCCEEEEEEC--CCceEEEECcHHHHHhCcCHHHHcCCcHHHhcC---------HHHHHHHHHhhcccCCCCcccCcccc
Confidence 4444455665 149999999999999999999999999888853 44433333322100
Q ss_pred -----HHhCcceEEEEEEE-eecC--cceeEEEE--EEEeeCCCCC--EEEEEEEEEee-ecccccCCcchhhhhhhhcc
Q 048754 121 -----LEEGIEFQGELLNF-KKDG--TPLVNRLR--LAPIRDDDGT--VTHIIGIQIFS-EAKIDLNHVSYPVFKENCNQ 187 (625)
Q Consensus 121 -----~~~~~~~~~e~~~~-~~dG--~~~~~~~~--~~~~~d~~g~--~~~~i~~~~Di-t~~~~~e~~~~~~~~~~~~~ 187 (625)
......+...++.. .++. ...++.+. +..+.+++|. ....+.++.-+ +..+..+ ..
T Consensus 104 ~~~~~~~~~rsF~CRmr~~l~k~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~~li~a~~~~s~~~~~~----------i~- 172 (320)
T 4dj2_A 104 SGLKDFTQEKSVFCRIRGGPDRDPGPRYQPFRLTPYVTKIRVSDGAPAQPCCLLIAERIHSGYEAPR----------IP- 172 (320)
T ss_dssp --------CCCEEEEECCC-------CCEEEEEEEEEEEECC---CCCEEEEEEEEEECCCSSSSSC----------CC-
T ss_pred cccccCCCceeEEEEEEEeccCCCcccEEEEEEEEEecccccCCCCcccceeeeeeeeccCcccccc----------cc-
Confidence 00111222222211 1111 12233322 2223344444 22222222211 1111000 00
Q ss_pred ccccccccc--cCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhHHHH
Q 048754 188 QYDQSAQYF--SGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVCRR 242 (625)
Q Consensus 188 ~~~~~~~~~--~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~~~ 242 (625)
......+. +.+..++|+|+++.+++||. +|++|..+++++||+|+..+....++
T Consensus 173 -~~~~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~ 229 (320)
T 4dj2_A 173 -PDKRIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKK 229 (320)
T ss_dssp -GGGCEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHH
T ss_pred -CCCceEEEEecCCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHH
Confidence 01111122 55666779999999999999 99999999999999998876444433
No 83
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.27 E-value=2.6e-06 Score=82.62 Aligned_cols=104 Identities=14% Similarity=0.191 Sum_probs=81.1
Q ss_pred eeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC-cce-EEEEE
Q 048754 55 TSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG-IEF-QGELL 132 (625)
Q Consensus 55 ~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~e~~ 132 (625)
.-+...+. +|.++++|+++..++||.++|++|++..++. ||++.+...+.+.+.+..+ ... ..++|
T Consensus 177 ~Fitrh~~---dG~~~yvd~~~~~lLGY~peELig~s~~~~v---------HPdD~~~~~~~~~~~l~~~g~~~~~~~yR 244 (320)
T 4dj2_A 177 IFTTRHTP---SCLFQDVDERAAPLLGYLPQDLLGAPVLLFL---------HPEDRPLMLAIHKKILQLAGQPFDHSPIR 244 (320)
T ss_dssp EEEEEECT---TCBEEEECTTHHHHHSCCHHHHTTSBGGGGB---------CGGGHHHHHHHHHHHTTSSSCCEECCCEE
T ss_pred eEEEEecC---CceEEEcCcceeccCCcChHHHcCCcHHHhC---------CHHHHHHHHHHHHHHHhcCCCcccceEEE
Confidence 44556677 9999999999999999999999999888774 5666655555555655533 344 35889
Q ss_pred EEeecCcceeEEEEEEEeeCC-CCCEEEEEEEEEeeecc
Q 048754 133 NFKKDGTPLVNRLRLAPIRDD-DGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~-~g~~~~~i~~~~Dit~~ 170 (625)
++++||...|++....++.+. .+++..++++-+.++..
T Consensus 245 ~~~kdG~~vwvet~~~~~~np~s~~~e~II~~h~v~~gp 283 (320)
T 4dj2_A 245 FCARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTAP 283 (320)
T ss_dssp EECSSSCEEEEECEEEEEECTTTCSEEEEEEEEEESSCC
T ss_pred EEccCCCEEEEEEEEEEEECCCCCCccEEEEEEEEccCC
Confidence 999999999999999888875 56777888877777654
No 84
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.23 E-value=1.4e-07 Score=77.24 Aligned_cols=99 Identities=15% Similarity=0.169 Sum_probs=71.4
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCC---CchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHH
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGY---RADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRC 120 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~---~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (625)
.+.+++. .+++++++|. +|+|+++|+++++++|+ ++++++|++..++.. ... +.+.
T Consensus 17 ~~~il~~--~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~------------~~~----~~~~ 75 (118)
T 2w0n_A 17 RQAMLQS--IKEGVVAVDD---RGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQ------------VVD----VSEV 75 (118)
T ss_dssp HHHHHHC--CCCCCEEEBT---TTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSC------------THH----HHHH
T ss_pred HHHHHhh--ccccEEEECC---CCcEeehhHHHHHHhCCCccChhhhhccCcccccC------------chh----HHHH
Confidence 3445555 8999999999 99999999999999997 889999998877743 111 3344
Q ss_pred HHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 121 LEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 121 ~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
+..+.....+. ...+| .|+.+...|+.+ +|.+.+++++.+|||
T Consensus 76 ~~~~~~~~~~~--~~~~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 76 LRDGTPRRDEE--ITIKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp HHTTCCCCCCC--EESSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred hccCceeccEE--EEECC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 44444332211 22345 467778889887 788888888889987
No 85
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.22 E-value=0.00018 Score=74.02 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=44.8
Q ss_pred cccccCchh----HHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHhhhhhhcc
Q 048754 210 CGILQLSDE----VLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAW 261 (625)
Q Consensus 210 ~~~~g~~~e----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (625)
.-+..+|.| ++ ..++.++++.++..+..+||+|+.++.+..+|+..|...+
T Consensus 9 d~~~~lp~e~~~~~~-~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~ 63 (435)
T 1p22_A 9 DFITALPARGLDHIA-ENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMV 63 (435)
T ss_dssp CHHHHTGGGTCHHHH-HHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred ChHHHCCcchHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhc
Confidence 345568877 77 8999999999999999999999999999999999888654
No 86
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.13 E-value=6.6e-07 Score=80.75 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=72.3
Q ss_pred ecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHH
Q 048754 43 LKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122 (625)
Q Consensus 43 ~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (625)
..+.+++. .+++++++|. +|+|+++|+++++++|++.++++|++..++.++ .. +.+.+.
T Consensus 81 ~l~~il~~--~~~gvi~~D~---~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~----------~~------~~~~~~ 139 (190)
T 2jhe_A 81 ALSALLEA--LPEPVLSVDM---KSKVDMANPASCQLFGQKLDRLRNHTAAQLING----------FN------FLRWLE 139 (190)
T ss_dssp HHHHHHHH--CSSCEEEECT---TCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTT----------CC------HHHHHH
T ss_pred HHHHHHHh--CCCcEEEEcC---CCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCC----------CC------HHHHHh
Confidence 34455556 8999999999 999999999999999999999999988877531 11 122333
Q ss_pred hCc--ceEEEEEEEeecCcceeEEEEEEEeeCCCCC----EEEEEEEEEeeeccc
Q 048754 123 EGI--EFQGELLNFKKDGTPLVNRLRLAPIRDDDGT----VTHIIGIQIFSEAKI 171 (625)
Q Consensus 123 ~~~--~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~----~~~~i~~~~Dit~~~ 171 (625)
.+. ....+.. .+|. ++.+.+.|+.+.+|. +.+++.+.+|||+.+
T Consensus 140 ~~~~~~~~~~~~---~~g~--~~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 140 SEPQDSHNEHVV---INGQ--NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 (190)
T ss_dssp TCCCSCEEEEEE---ETTE--EEEEEEEEETTTTEEEEEEEE-HHHHHHHHTTTC
T ss_pred cCCCCCcceEEE---ECCe--EEEEEEEEEEecCCCCcceEEeEEEEEeccchhc
Confidence 333 2222332 2665 456778898765555 677778889999875
No 87
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.97 E-value=0.0029 Score=65.07 Aligned_cols=50 Identities=26% Similarity=0.394 Sum_probs=44.0
Q ss_pred cccccCchhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHhhhhhhc
Q 048754 210 CGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNA 260 (625)
Q Consensus 210 ~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (625)
.-+..+|+|++ ..++.++++.++..+..+||+|+.++.+..+|+..++..
T Consensus 17 d~~~~lp~e~~-~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~ 66 (445)
T 2ovr_B 17 DFISLLPKELA-LYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE 66 (445)
T ss_dssp STTTSSCHHHH-HHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred ChhHHCCHHHH-HHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeec
Confidence 34567888888 899999999999999999999999999999999887643
No 88
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.92 E-value=0.0053 Score=61.46 Aligned_cols=213 Identities=14% Similarity=0.146 Sum_probs=117.6
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCC----CccceeEEEEcCCEEEEEccCCCCCccc
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPP----GRWGHTLSSLNGSWLVVFGGCGRQGLLN 384 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~----~r~~~~~~~~~~~~iyv~GG~~~~~~~~ 384 (625)
.+.++.++.||+.... ..+++||..+.+..|+.-.....+. .....+...+.++.||+.... .
T Consensus 47 ~~p~v~~~~v~~~~~~-------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~------g 113 (376)
T 3q7m_A 47 LHPALADNVVYAADRA-------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK------A 113 (376)
T ss_dssp CCCEEETTEEEEECTT-------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT------S
T ss_pred eccEEECCEEEEEcCC-------CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC------C
Confidence 3566789999998642 2489999987667887542111100 111123334557788886532 4
Q ss_pred cEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCC
Q 048754 385 DVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRL 464 (625)
Q Consensus 385 ~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~ 464 (625)
.++.+|..+++..|+.-.... ...+. .+.++.+|+..+ ...++.||+.+.+..|+.-........+.
T Consensus 114 ~l~a~d~~tG~~~W~~~~~~~-----~~~~p-~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~ 180 (376)
T 3q7m_A 114 QVYALNTSDGTVAWQTKVAGE-----ALSRP-VVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDMPSLSLRG 180 (376)
T ss_dssp EEEEEETTTCCEEEEEECSSC-----CCSCC-EEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred EEEEEECCCCCEEEEEeCCCc-----eEcCC-EEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence 699999999988898543221 11122 233667777432 13689999988888898754321111122
Q ss_pred cceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCc---cceEEEEecCCE
Q 048754 465 GHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPR---LDHVAVSMPCGR 541 (625)
Q Consensus 465 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r---~~~~~~~~~~~~ 541 (625)
..+.++. ++.+|+ |.. ...++.+|+.+....|+.-...+ .+.....+ .....+.. ++.
T Consensus 181 ~~~~~~~-~~~v~~-g~~---------~g~l~~~d~~tG~~~w~~~~~~~-------~~~~~~~~~~~~~~~p~~~-~~~ 241 (376)
T 3q7m_A 181 ESAPTTA-FGAAVV-GGD---------NGRVSAVLMEQGQMIWQQRISQA-------TGSTEIDRLSDVDTTPVVV-NGV 241 (376)
T ss_dssp CCCCEEE-TTEEEE-CCT---------TTEEEEEETTTCCEEEEEECCC------------------CCCCCCEEE-TTE
T ss_pred CCCcEEE-CCEEEE-EcC---------CCEEEEEECCCCcEEEEEecccC-------CCCcccccccccCCCcEEE-CCE
Confidence 2233344 436665 322 25688999987667887643221 00000011 11122233 777
Q ss_pred EEEEecCCCCCCCCCcEEEEeCCCCCCCeEEE
Q 048754 542 IIIFGGSIAGLHSPSQLFLLDPSEEKPSWRIL 573 (625)
Q Consensus 542 l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v 573 (625)
+|+.+. ...+++||+.+.+..|+.-
T Consensus 242 v~~~~~-------~g~l~~~d~~tG~~~w~~~ 266 (376)
T 3q7m_A 242 VFALAY-------NGNLTALDLRSGQIMWKRE 266 (376)
T ss_dssp EEEECT-------TSCEEEEETTTCCEEEEEC
T ss_pred EEEEec-------CcEEEEEECCCCcEEeecc
Confidence 777532 3478999995556678653
No 89
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.85 E-value=0.0037 Score=64.58 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=44.3
Q ss_pred cccccCchhHHHHhhhcccCchhhhhHHhHHHHHHHhhcc-hhHHhhhhhhc
Q 048754 210 CGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKN-EHVRKMVCQNA 260 (625)
Q Consensus 210 ~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 260 (625)
.-+..+|+|++ ..++.++++.++..+..+||+|+.++.+ ..+|+..+...
T Consensus 13 d~~~~lp~~~~-~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~ 63 (464)
T 3v7d_B 13 DLITSLPFEIS-LKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE 63 (464)
T ss_dssp CHHHHSCHHHH-HHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHT
T ss_pred CChHHCCHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence 34667899998 9999999999999999999999999998 88999888643
No 90
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.83 E-value=0.022 Score=56.81 Aligned_cols=200 Identities=12% Similarity=0.138 Sum_probs=114.4
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEE
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFV 388 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 388 (625)
.+.+..++.||+.... ..++++|..+-+..|+.-. ... ...+. ++.++.+|+..+ ...++.
T Consensus 97 ~~~~~~~~~v~v~~~~-------g~l~a~d~~tG~~~W~~~~-~~~----~~~~p-~~~~~~v~v~~~------~g~l~~ 157 (376)
T 3q7m_A 97 GGVTVSGGHVYIGSEK-------AQVYALNTSDGTVAWQTKV-AGE----ALSRP-VVSDGLVLIHTS------NGQLQA 157 (376)
T ss_dssp EEEEEETTEEEEEETT-------SEEEEEETTTCCEEEEEEC-SSC----CCSCC-EEETTEEEEECT------TSEEEE
T ss_pred cCceEeCCEEEEEcCC-------CEEEEEECCCCCEEEEEeC-CCc----eEcCC-EEECCEEEEEcC------CCeEEE
Confidence 4445678889886532 2489999987666787532 111 11112 233667777543 136999
Q ss_pred EECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC-----
Q 048754 389 LDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR----- 463 (625)
Q Consensus 389 ~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r----- 463 (625)
||..+++..|..-........+...+.+.. ++.+|+ |.. ...++.||+.+.+..|+.-.. .|...
T Consensus 158 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~-g~~------~g~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~ 227 (376)
T 3q7m_A 158 LNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVV-GGD------NGRVSAVLMEQGQMIWQQRIS--QATGSTEIDR 227 (376)
T ss_dssp EETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEE-CCT------TTEEEEEETTTCCEEEEEECC--C---------
T ss_pred EECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEE-EcC------CCEEEEEECCCCcEEEEEecc--cCCCCccccc
Confidence 999998778986543211111222233333 556666 321 136899999888888986532 11111
Q ss_pred ---CcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCC
Q 048754 464 ---LGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG 540 (625)
Q Consensus 464 ---~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~ 540 (625)
.....++. ++.+|+.+. ...++.+|+.+....|+.-.. . .......++
T Consensus 228 ~~~~~~~p~~~-~~~v~~~~~----------~g~l~~~d~~tG~~~w~~~~~--------------~----~~~~~~~~~ 278 (376)
T 3q7m_A 228 LSDVDTTPVVV-NGVVFALAY----------NGNLTALDLRSGQIMWKRELG--------------S----VNDFIVDGN 278 (376)
T ss_dssp --CCCCCCEEE-TTEEEEECT----------TSCEEEEETTTCCEEEEECCC--------------C----EEEEEEETT
T ss_pred ccccCCCcEEE-CCEEEEEec----------CcEEEEEECCCCcEEeeccCC--------------C----CCCceEECC
Confidence 11223334 447777642 257889999876667864311 1 122333388
Q ss_pred EEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEE
Q 048754 541 RIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRIL 573 (625)
Q Consensus 541 ~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v 573 (625)
.||+... ...+++||+.+.+..|+.-
T Consensus 279 ~l~~~~~-------~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 279 RIYLVDQ-------NDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp EEEEEET-------TCCEEEEETTTCCEEEEEC
T ss_pred EEEEEcC-------CCeEEEEECCCCcEEEeec
Confidence 8888743 3479999996556678754
No 91
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=97.60 E-value=0.0085 Score=57.06 Aligned_cols=223 Identities=8% Similarity=0.011 Sum_probs=119.6
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQ 395 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~ 395 (625)
+.+++.|..+ +.++++|..+-+..|+.-. + .....|.+....++++++.+ .+.++.||+ +++
T Consensus 5 ~~~lv~~~~~------~~v~~~d~~tG~~~w~~~~--~--~~~~~~~~~~~pdG~ilvs~-------~~~V~~~d~-~G~ 66 (276)
T 3no2_A 5 QHLLVGGSGW------NKIAIINKDTKEIVWEYPL--E--KGWECNSVAATKAGEILFSY-------SKGAKMITR-DGR 66 (276)
T ss_dssp CEEEEECTTC------SEEEEEETTTTEEEEEEEC--C--TTCCCCEEEECTTSCEEEEC-------BSEEEEECT-TSC
T ss_pred CcEEEeeCCC------CEEEEEECCCCeEEEEeCC--C--ccCCCcCeEECCCCCEEEeC-------CCCEEEECC-CCC
Confidence 5666666542 2388999866556787431 1 11123455555566677733 135999999 677
Q ss_pred CEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCC-CCcceEEEECCc
Q 048754 396 PTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPS-RLGHSLSVYGRT 474 (625)
Q Consensus 396 ~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~-r~~~~~~~~~~~ 474 (625)
..|+.-.. .....+++....++.+++..... ...++.+|+ +.+..|+.-.....+.+ ...+.+....++
T Consensus 67 ~~W~~~~~----~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G 136 (276)
T 3no2_A 67 ELWNIAAP----AGCEMQTARILPDGNALVAWCGH-----PSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG 136 (276)
T ss_dssp EEEEEECC----TTCEEEEEEECTTSCEEEEEEST-----TEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS
T ss_pred EEEEEcCC----CCccccccEECCCCCEEEEecCC-----CCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC
Confidence 78875432 11122444455455565543311 136777886 44444553211111110 111223344444
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS 554 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~ 554 (625)
.+++.... ...+..||++ ....|+.-... ..+++....+++++|.+..
T Consensus 137 ~~lv~~~~---------~~~v~~~d~~-G~~~w~~~~~~----------------~~~~~~~~~~g~~~v~~~~------ 184 (276)
T 3no2_A 137 NYLVPLFA---------TSEVREIAPN-GQLLNSVKLSG----------------TPFSSAFLDNGDCLVACGD------ 184 (276)
T ss_dssp CEEEEETT---------TTEEEEECTT-SCEEEEEECSS----------------CCCEEEECTTSCEEEECBT------
T ss_pred CEEEEecC---------CCEEEEECCC-CCEEEEEECCC----------------CccceeEcCCCCEEEEeCC------
Confidence 55554332 2678899988 56678753211 1234455557888887653
Q ss_pred CCcEEEEeCCCCCCCeEEEcCCCCCCCCC--CcceEEEECCcEEEEEc
Q 048754 555 PSQLFLLDPSEEKPSWRILNVPGQPPKFA--WGHSTCVVGGTRVLVLG 600 (625)
Q Consensus 555 ~~~v~~~d~~~~~~~W~~v~~~~~~p~~r--~~~~~~~~~~~~i~i~G 600 (625)
...++.||+.+.+..|+.-.. ..+..+ +-.++.+..++.+||..
T Consensus 185 ~~~v~~~d~~tG~~~w~~~~~--~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 185 AHCFVQLNLESNRIVRRVNAN--DIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp TSEEEEECTTTCCEEEEEEGG--GSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CCeEEEEeCcCCcEEEEecCC--CCCCccccccccceEcCCCCEEEEe
Confidence 346999999655677876532 111112 12445556677888766
No 92
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=96.68 E-value=1.2e-05 Score=77.84 Aligned_cols=111 Identities=16% Similarity=0.055 Sum_probs=70.4
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhC---CCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh-Ccc
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTG---YRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE-GIE 126 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G---~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 126 (625)
+..++||+++|. +|+|+++|++++++++ +. ++++|++..++...... .+.........+...+.. +..
T Consensus 177 ~~~~dGIivvD~---~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~----~~~~~~~~~~~l~~vl~~~~~~ 248 (305)
T 2ykf_A 177 PRAGDGFIRLDV---DGVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLIS----DPFEAHEVDEHVQDLLAGDGKG 248 (305)
Confidence 358899999999 9999999999999985 44 78899988777531000 000000111112222322 222
Q ss_pred eEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 127 FQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 127 ~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
...+.. ..| .++.+...|+.+ +|.+.+.+.+++|||+.+++|+
T Consensus 249 ~~~ei~---~~~--~~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~ 291 (305)
T 2ykf_A 249 MRMEVD---AGG--ATVLLRTLPLVV-AGRNVGAAILIRDVTEVKRRDR 291 (305)
Confidence 222221 123 356777889876 5778889999999999998776
No 93
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.48 E-value=0.091 Score=51.25 Aligned_cols=278 Identities=10% Similarity=-0.045 Sum_probs=139.4
Q ss_pred ccceeeeecccCeeEEeeec--CCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCce-EEcccCCCCC
Q 048754 280 RLARELTTLEAVCWRKFTVR--GAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEW-RRVSVKSSPP 356 (625)
Q Consensus 280 ~~~~~~~~~~~~~W~~~~~~--~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W-~~~~~~~~p~ 356 (625)
.-.-.++|+.+.++...-.. ...+.......++..++++|+.... .+.+.++|..+ .+- ..+. ....
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~------~~~v~viD~~t--~~~~~~i~--~~~~ 85 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN------SHVIFAIDINT--FKEVGRIT--GFTS 85 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG------GTEEEEEETTT--CCEEEEEE--CCSS
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC------CCEEEEEECcc--cEEEEEcC--CCCC
Confidence 33445677777766532110 1123333345566789999999863 23489999987 333 2231 1122
Q ss_pred CccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCC-CCccceEEEEcCCEEEEEcCcCCCCce
Q 048754 357 GRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPL-PRSWHSSCIIEGSKLVVSGGCTDAGVL 435 (625)
Q Consensus 357 ~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~~~ 435 (625)
| +.++...++++|+.... .+.+.++|+.+.+..+ .++.+.... ...-+..+. +++++|+..- . .
T Consensus 86 p---~~i~~~~~g~lyv~~~~-----~~~v~~iD~~t~~~~~-~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~-~----~ 150 (328)
T 3dsm_A 86 P---RYIHFLSDEKAYVTQIW-----DYRIFIINPKTYEITG-YIECPDMDMESGSTEQMVQ-YGKYVYVNCW-S----Y 150 (328)
T ss_dssp E---EEEEEEETTEEEEEEBS-----CSEEEEEETTTTEEEE-EEECTTCCTTTCBCCCEEE-ETTEEEEEEC-T----T
T ss_pred C---cEEEEeCCCeEEEEECC-----CCeEEEEECCCCeEEE-EEEcCCccccCCCcceEEE-ECCEEEEEcC-C----C
Confidence 2 23343245689998753 2579999999883222 232221000 001122333 6789999742 0 1
Q ss_pred eceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCC-cccccCceEEEEcCCCCCceeEeeecc
Q 048754 436 LSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGH-LRLRSGESYTIDLGDEEPQWKQLECNA 514 (625)
Q Consensus 436 ~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~-~~~~~~~~~~~d~~~~~~~W~~~~~~~ 514 (625)
.+.+.++|+.+.+..+ .++....| +.++...++++|+......... .......++++|+.+ .+....-..
T Consensus 151 ~~~v~viD~~t~~~~~-~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t--~~v~~~~~~- 221 (328)
T 3dsm_A 151 QNRILKIDTETDKVVD-ELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET--FTVEKQFKF- 221 (328)
T ss_dssp CCEEEEEETTTTEEEE-EEECSSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT--TEEEEEEEC-
T ss_pred CCEEEEEECCCCeEEE-EEEcCCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC--CeEEEEEec-
Confidence 2578999987765322 22221122 3344445568888754321111 000126799999883 343322112
Q ss_pred ccCcCCCCCCCCCCccceEEEEec-CCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCC-CCCcceEEEEC
Q 048754 515 FTGVGSQSAVVPPPRLDHVAVSMP-CGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPK-FAWGHSTCVVG 592 (625)
Q Consensus 515 ~~~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~-~r~~~~~~~~~ 592 (625)
+........+... ++.||+..+ .++++|+ .+.+..... ..+. ...-.++++.+
T Consensus 222 -----------~~g~~p~~la~~~d~~~lyv~~~---------~v~~~d~--~t~~~~~~~---~~~~~~~~p~gi~vdp 276 (328)
T 3dsm_A 222 -----------KLGDWPSEVQLNGTRDTLYWINN---------DIWRMPV--EADRVPVRP---FLEFRDTKYYGLTVNP 276 (328)
T ss_dssp -----------CTTCCCEEEEECTTSCEEEEESS---------SEEEEET--TCSSCCSSC---SBCCCSSCEEEEEECT
T ss_pred -----------CCCCCceeEEEecCCCEEEEEcc---------EEEEEEC--CCCceeeee---eecCCCCceEEEEEcC
Confidence 1111122333332 567888632 8999999 444432111 1111 12223444443
Q ss_pred -CcEEEEEcCcCCCCCccCceEEEEcc
Q 048754 593 -GTRVLVLGGHTGEEWVLNELHELCLA 618 (625)
Q Consensus 593 -~~~i~i~GG~~~~~~~~~d~~~~~~~ 618 (625)
++.||+....+-.. -+.|++|+.+
T Consensus 277 ~~g~lyva~~~~y~~--~~~V~v~d~~ 301 (328)
T 3dsm_A 277 NNGEVYVADAIDYQQ--QGIVYRYSPQ 301 (328)
T ss_dssp TTCCEEEEECTTSSS--EEEEEEECTT
T ss_pred CCCeEEEEccccccc--CCEEEEECCC
Confidence 57888876321111 3567777764
No 94
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.22 E-value=0.15 Score=49.56 Aligned_cols=230 Identities=9% Similarity=-0.010 Sum_probs=118.8
Q ss_pred CCCeEEEeccCCCCceEEccc---CCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCC
Q 048754 331 MDDTFVLNLDAANPEWRRVSV---KSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPP 407 (625)
Q Consensus 331 ~~~~~~~~~~~~~~~W~~~~~---~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p 407 (625)
.+.+.++|+.+ .++..--. ...+.....+.++. .++++|+.... .+.+.++|+.+.+.. ..++.. .
T Consensus 16 ~~~l~~~d~~t--~~~~~~i~~~~n~~~lg~~~~~i~~-~~~~lyv~~~~-----~~~v~viD~~t~~~~-~~i~~~--~ 84 (328)
T 3dsm_A 16 NATLSYYDPAT--CEVENEVFYRANGFKLGDVAQSMVI-RDGIGWIVVNN-----SHVIFAIDINTFKEV-GRITGF--T 84 (328)
T ss_dssp CBEEEEEETTT--TEEECSHHHHHHSSCCBSCEEEEEE-ETTEEEEEEGG-----GTEEEEEETTTCCEE-EEEECC--S
T ss_pred CceEEEEECCC--CEEhhhhHhhhcCcccCccceEEEE-ECCEEEEEEcC-----CCEEEEEECcccEEE-EEcCCC--C
Confidence 34588999887 45543110 11122233344444 57789998752 357999999988322 234322 2
Q ss_pred CCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCC-CCCCcceEEEECCcEEEEEcCCcCCC
Q 048754 408 LPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSP-PSRLGHSLSVYGRTKVLMFGGLAKSG 486 (625)
Q Consensus 408 ~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p-~~r~~~~~~~~~~~~l~v~GG~~~~~ 486 (625)
.+ +..+...++++|+.... .+.+.++|+.+.+..++ ++.+... ....-+.+++ .++++|+..-.
T Consensus 85 ~p---~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~-i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~---- 149 (328)
T 3dsm_A 85 SP---RYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGY-IECPDMDMESGSTEQMVQ-YGKYVYVNCWS---- 149 (328)
T ss_dssp SE---EEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEE-EECTTCCTTTCBCCCEEE-ETTEEEEEECT----
T ss_pred CC---cEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEE-EEcCCccccCCCcceEEE-ECCEEEEEcCC----
Confidence 22 23334245689997632 25789999877553322 2221100 0002234444 45599998420
Q ss_pred CcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC----CCcEEEEe
Q 048754 487 HLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS----PSQLFLLD 562 (625)
Q Consensus 487 ~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~----~~~v~~~d 562 (625)
..+.+.++|+.+ .+....-.. + ..| +......++++|+..-....... .+.++++|
T Consensus 150 ----~~~~v~viD~~t--~~~~~~i~~---------g--~~p---~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id 209 (328)
T 3dsm_A 150 ----YQNRILKIDTET--DKVVDELTI---------G--IQP---TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRID 209 (328)
T ss_dssp ----TCCEEEEEETTT--TEEEEEEEC---------S--SCB---CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEE
T ss_pred ----CCCEEEEEECCC--CeEEEEEEc---------C--CCc---cceEEcCCCCEEEEECCCccCCccccCCceEEEEE
Confidence 026899999984 333222111 1 111 23333446888887543211111 36899999
Q ss_pred CCCCCCCeEEEcCCCCCCCCCCcceEEEEC-CcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 563 PSEEKPSWRILNVPGQPPKFAWGHSTCVVG-GTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 563 ~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~-~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
+ .+.+....- ..|....-..+++.. ++.+|+..+ .++++|+.+.
T Consensus 210 ~--~t~~v~~~~---~~~~g~~p~~la~~~d~~~lyv~~~---------~v~~~d~~t~ 254 (328)
T 3dsm_A 210 A--ETFTVEKQF---KFKLGDWPSEVQLNGTRDTLYWINN---------DIWRMPVEAD 254 (328)
T ss_dssp T--TTTEEEEEE---ECCTTCCCEEEEECTTSCEEEEESS---------SEEEEETTCS
T ss_pred C--CCCeEEEEE---ecCCCCCceeEEEecCCCEEEEEcc---------EEEEEECCCC
Confidence 9 555554321 111122223444443 457777543 6777777554
No 95
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.11 E-value=0.14 Score=46.99 Aligned_cols=194 Identities=14% Similarity=0.077 Sum_probs=105.3
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEE-EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEec
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWI-EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDL 444 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~ 444 (625)
+.++.+|+..|..+. +.+..+|+.++ +-. .++- |..-++... ...++++|+.... .+.+++||+
T Consensus 28 ~~~~~LyestG~~g~---S~v~~vD~~tg--kv~~~~~l---~~~~fgeGi-~~~~~~ly~ltw~------~~~v~v~D~ 92 (243)
T 3mbr_X 28 YLRGHLYESTGETGR---SSVRKVDLETG--RILQRAEV---PPPYFGAGI-VAWRDRLIQLTWR------NHEGFVYDL 92 (243)
T ss_dssp EETTEEEEEECCTTS---CEEEEEETTTC--CEEEEEEC---CTTCCEEEE-EEETTEEEEEESS------SSEEEEEET
T ss_pred EECCEEEEECCCCCC---ceEEEEECCCC--CEEEEEeC---CCCcceeEE-EEeCCEEEEEEee------CCEEEEEEC
Confidence 456799999996543 46899999998 333 3321 333344444 4447899997542 358999997
Q ss_pred CCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCc-eeEeeeccccCcCCCCC
Q 048754 445 TTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQ-WKQLECNAFTGVGSQSA 523 (625)
Q Consensus 445 ~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~-W~~~~~~~~~~~~~~~~ 523 (625)
++.+ .+.. .+.+..+.+++. ++++||+.-| ++.++++|+++ .+ -..+...
T Consensus 93 ~tl~----~~~t--i~~~~~Gwglt~-dg~~L~vSdg----------s~~l~~iDp~t--~~~~~~I~V~---------- 143 (243)
T 3mbr_X 93 ATLT----PRAR--FRYPGEGWALTS-DDSHLYMSDG----------TAVIRKLDPDT--LQQVGSIKVT---------- 143 (243)
T ss_dssp TTTE----EEEE--EECSSCCCEEEE-CSSCEEEECS----------SSEEEEECTTT--CCEEEEEECE----------
T ss_pred CcCc----EEEE--EeCCCCceEEee-CCCEEEEECC----------CCeEEEEeCCC--CeEEEEEEEc----------
Confidence 6533 2221 111223455554 3448999855 27899999984 32 2223221
Q ss_pred CCCCCccc-eEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeE-EEcCCCCC--------CCCCCcceEEEEC-
Q 048754 524 VVPPPRLD-HVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWR-ILNVPGQP--------PKFAWGHSTCVVG- 592 (625)
Q Consensus 524 ~~p~~r~~-~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~-~v~~~~~~--------p~~r~~~~~~~~~- 592 (625)
..+.+... .-+... +++||+--- ..++|.+.|+ .+.+=. .+...+-. +..-.-.+.+...
T Consensus 144 ~~g~~~~~lNeLe~~-~G~lyanvw------~s~~I~vIDp--~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~ 214 (243)
T 3mbr_X 144 AGGRPLDNLNELEWV-NGELLANVW------LTSRIARIDP--ASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE 214 (243)
T ss_dssp ETTEECCCEEEEEEE-TTEEEEEET------TTTEEEEECT--TTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT
T ss_pred cCCcccccceeeEEe-CCEEEEEEC------CCCeEEEEEC--CCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC
Confidence 11222111 122233 788886432 2579999999 444332 22222111 1111223444443
Q ss_pred CcEEEEEcCcCCCCCccCceEEEEcc
Q 048754 593 GTRVLVLGGHTGEEWVLNELHELCLA 618 (625)
Q Consensus 593 ~~~i~i~GG~~~~~~~~~d~~~~~~~ 618 (625)
+++|||.|=+- ..+|...+.
T Consensus 215 ~~~lfVTGK~w------p~~~~v~~~ 234 (243)
T 3mbr_X 215 HDRLFVTGKRW------PMLYEIRLT 234 (243)
T ss_dssp TTEEEEEETTC------SEEEEEEEC
T ss_pred CCEEEEECCCC------CcEEEEEEe
Confidence 47899988643 445555543
No 96
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=96.78 E-value=0.00091 Score=45.32 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=38.7
Q ss_pred ccccccCchhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHhh
Q 048754 209 ICGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKM 255 (625)
Q Consensus 209 ~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (625)
...+..+|+|++ ..++.++++.++..+..+||+|+.++.+..+|+.
T Consensus 6 ~~~~~~LP~eil-~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~ 51 (53)
T 1fs1_A 6 GVSWDSLPDELL-LGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT 51 (53)
T ss_dssp ---CCSSCHHHH-HHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC--
T ss_pred CCCHHHCCHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHh
Confidence 345678999999 8999999999999999999999999999998874
No 97
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.68 E-value=0.26 Score=45.67 Aligned_cols=197 Identities=13% Similarity=0.085 Sum_probs=104.1
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecC
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
+.++.+|+..|..+ .+.+.++|+.|++.. ..++. + ++....++...++++|+.... .+.+++||++
T Consensus 50 ~~~~~LyestG~~g---~S~v~~vD~~Tgkv~-~~~~l---~-~~~FgeGit~~g~~ly~ltw~------~~~v~v~D~~ 115 (262)
T 3nol_A 50 YRNGYFYESTGLNG---RSSIRKVDIESGKTL-QQIEL---G-KRYFGEGISDWKDKIVGLTWK------NGLGFVWNIR 115 (262)
T ss_dssp EETTEEEEEEEETT---EEEEEEECTTTCCEE-EEEEC---C-TTCCEEEEEEETTEEEEEESS------SSEEEEEETT
T ss_pred EECCEEEEECCCCC---CceEEEEECCCCcEE-EEEec---C-CccceeEEEEeCCEEEEEEee------CCEEEEEECc
Confidence 34679999998644 246899999998422 23321 2 233233344457899997542 2589999986
Q ss_pred CCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC
Q 048754 446 TDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 446 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~ 525 (625)
+.+. -..++. +-.+.+.+. +++.||+.-| ++.++++|+++. ..-..+.... ...
T Consensus 116 t~~~-~~ti~~-----~~eG~glt~-dg~~L~~SdG----------s~~i~~iDp~T~-~v~~~I~V~~--------~g~ 169 (262)
T 3nol_A 116 NLRQ-VRSFNY-----DGEGWGLTH-NDQYLIMSDG----------TPVLRFLDPESL-TPVRTITVTA--------HGE 169 (262)
T ss_dssp TCCE-EEEEEC-----SSCCCCEEE-CSSCEEECCS----------SSEEEEECTTTC-SEEEEEECEE--------TTE
T ss_pred cCcE-EEEEEC-----CCCceEEec-CCCEEEEECC----------CCeEEEEcCCCC-eEEEEEEecc--------CCc
Confidence 6441 223332 123344543 3448888754 278999999841 1222222210 000
Q ss_pred CCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEE-EcCCCCC-------CCCCCcceEEEEC-CcEE
Q 048754 526 PPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRI-LNVPGQP-------PKFAWGHSTCVVG-GTRV 596 (625)
Q Consensus 526 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~-v~~~~~~-------p~~r~~~~~~~~~-~~~i 596 (625)
|....+ -+... +++||+--- ..++|.+.|+ .+.+=.. +...+-. +..-.-.+.+... .++|
T Consensus 170 ~~~~lN-ELe~~-~G~lyan~w------~~~~I~vIDp--~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~l 239 (262)
T 3nol_A 170 ELPELN-ELEWV-DGEIFANVW------QTNKIVRIDP--ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRL 239 (262)
T ss_dssp ECCCEE-EEEEE-TTEEEEEET------TSSEEEEECT--TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEE
T ss_pred cccccc-eeEEE-CCEEEEEEc------cCCeEEEEEC--CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEE
Confidence 111111 12233 788886422 2579999999 4544322 2222111 1111224445554 4789
Q ss_pred EEEcCcCCCCCccCceEEEEcc
Q 048754 597 LVLGGHTGEEWVLNELHELCLA 618 (625)
Q Consensus 597 ~i~GG~~~~~~~~~d~~~~~~~ 618 (625)
||.|-.- ..+|...+.
T Consensus 240 fVTGK~W------p~~~ev~~~ 255 (262)
T 3nol_A 240 FVTGKLW------PKVFEITLT 255 (262)
T ss_dssp EEEETTC------SEEEEEEEE
T ss_pred EEECCCC------CceEEEEEe
Confidence 9988643 345555443
No 98
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.66 E-value=0.53 Score=45.72 Aligned_cols=198 Identities=10% Similarity=0.049 Sum_probs=96.4
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCC-----ccceeEEEE-cCCEEEEEccCCCCCccccEEE
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPG-----RWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFV 388 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~-----r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 388 (625)
++.+|+.++.. +.++++|+.+....+ .+.......+ ..-+.++.. +++++|+.+... ...+++
T Consensus 100 g~~l~v~~~~~------~~v~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~~i~~ 168 (353)
T 3vgz_A 100 TQTLWFGNTVN------SAVTAIDAKTGEVKG-RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----ESVIWV 168 (353)
T ss_dssp TTEEEEEETTT------TEEEEEETTTCCEEE-EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----SCEEEE
T ss_pred CCEEEEEecCC------CEEEEEeCCCCeeEE-EEecCCCccccccCCCCCceEEECCCCCEEEEEecCC----CceEEE
Confidence 45688877642 248999987742222 2322211110 111223332 456788776321 235999
Q ss_pred EECCCCCCEEEEcC-CCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcc
Q 048754 389 LDLDAKQPTWIEVS-GGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGH 466 (625)
Q Consensus 389 ~d~~t~~~~W~~~~-~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~ 466 (625)
+|+.+.+..+ .++ ....| +..+.. +++.+|+... .+.++++|+.+....+..-. ..........
T Consensus 169 ~d~~~~~~~~-~~~~~~~~~-----~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~ 234 (353)
T 3vgz_A 169 VDGGNIKLKT-AIQNTGKMS-----TGLALDSEGKRLYTTNA-------DGELITIDTADNKILSRKKL-LDDGKEHFFI 234 (353)
T ss_dssp EETTTTEEEE-EECCCCTTC-----CCCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEEEEC-CCSSSCCCEE
T ss_pred EcCCCCceEE-EecCCCCcc-----ceEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEEc-CCCCCCcccc
Confidence 9998873222 222 11111 222233 5566777543 14678899876553333222 1111111222
Q ss_pred eEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEE
Q 048754 467 SLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIF 545 (625)
Q Consensus 467 ~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~ 545 (625)
+++... ++.+|+.... ...+++||+.+ .+....-.. +.+ ...++.-.++.+|+.
T Consensus 235 ~~~~s~dg~~l~~~~~~---------~~~v~~~d~~~--~~~~~~~~~------------~~~--~~~~~s~dg~~l~v~ 289 (353)
T 3vgz_A 235 NISLDTARQRAFITDSK---------AAEVLVVDTRN--GNILAKVAA------------PES--LAVLFNPARNEAYVT 289 (353)
T ss_dssp EEEEETTTTEEEEEESS---------SSEEEEEETTT--CCEEEEEEC------------SSC--CCEEEETTTTEEEEE
T ss_pred eEEECCCCCEEEEEeCC---------CCEEEEEECCC--CcEEEEEEc------------CCC--ceEEECCCCCEEEEE
Confidence 333433 3367776432 26889999974 232222212 112 223333324457777
Q ss_pred ecCCCCCCCCCcEEEEeCCCCCCCe
Q 048754 546 GGSIAGLHSPSQLFLLDPSEEKPSW 570 (625)
Q Consensus 546 GG~~~~~~~~~~v~~~d~~~~~~~W 570 (625)
+.. .+.+.++|+ .+.+.
T Consensus 290 ~~~------~~~v~~~d~--~~~~~ 306 (353)
T 3vgz_A 290 HRQ------AGKVSVIDA--KSYKV 306 (353)
T ss_dssp ETT------TTEEEEEET--TTTEE
T ss_pred ECC------CCeEEEEEC--CCCeE
Confidence 543 358999998 44443
No 99
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=96.57 E-value=0.0059 Score=49.27 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=72.1
Q ss_pred EEEecCCCCCCCEEEEehHHHHHhCCCc--hhhcCCCCcccccCCcccccCCCCCCh--HHHHHHHHHHHhCcceEEEEE
Q 048754 57 FVVADAFDPDFPIIYVNKVFEIFTGYRA--DEVLGRNCRFLQYRDPRAQRRHPLVDP--VVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 57 i~~~d~~~~~g~i~~~N~~~~~~~G~~~--~e~~g~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~ 132 (625)
+.-.|. +|.|+++.....+ .++.+ +|++|+.+.+++ ||++.. ...+.+.+++..|.....-++
T Consensus 10 ~sRh~~---dGKf~~vDq~~~r-~~~~~g~qdLlGrsiy~f~---------H~~D~~~s~l~~h~~~vl~~Gq~~S~~YR 76 (132)
T 1oj5_A 10 MTKQDT---TGKIISIDTSSLR-AAGRTGWEDLVRKCIYAFF---------QPQGREPSYARQLFQEVMTRGTASSPSYR 76 (132)
T ss_dssp EEEECT---TCCEEEEECHHHH-TTCCSCHHHHHHHHHHHHT---------SCBTTBCCHHHHHHHHHHHHSEEECCCEE
T ss_pred EEeecC---CCcEEEEeccccc-ccccccHHHHHHHHHHHHh---------CcccchHHHHHHHHHHHHHcCCccccceE
Confidence 344566 9999999998774 77777 899999999885 455543 556666677777777777789
Q ss_pred EEeecCcceeEEEEEEEeeCC-CCCEEEEEEEEEeeecc
Q 048754 133 NFKKDGTPLVNRLRLAPIRDD-DGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~-~g~~~~~i~~~~Dit~~ 170 (625)
++.++|..+|+......+++. ..++..++++-.-+.+.
T Consensus 77 fr~k~g~~V~~qT~sk~f~np~t~e~e~Ivs~n~v~r~~ 115 (132)
T 1oj5_A 77 FILNDGTMLSAHTRCKLCYPQSPDMQPFIMGIHIIDREH 115 (132)
T ss_dssp EECTTSCEEEEEEEEEEECC----CCCEEEEEEEEECC-
T ss_pred EEecCCcEEEEEEEEEEecCCCCCCCCEEEEEEEEEcCC
Confidence 999999999999988877764 23445555554444443
No 100
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.57 E-value=0.4 Score=48.35 Aligned_cols=150 Identities=11% Similarity=-0.021 Sum_probs=72.8
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.+|+.|+.+. .+.+||+.+.... ..+. . ..... .+++.. +++.+|+.++.+ ..+++||+.+
T Consensus 180 ~~~~~~s~~~d~------~v~~~d~~~~~~~-~~~~-~--~~~~~-~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~~ 243 (433)
T 3bws_A 180 HNELWVSQMQAN------AVHVFDLKTLAYK-ATVD-L--TGKWS-KILLYDPIRDLVYCSNWIS-----EDISVIDRKT 243 (433)
T ss_dssp GTEEEEEEGGGT------EEEEEETTTCCEE-EEEE-C--SSSSE-EEEEEETTTTEEEEEETTT-----TEEEEEETTT
T ss_pred CCEEEEEECCCC------EEEEEECCCceEE-EEEc-C--CCCCe-eEEEEcCCCCEEEEEecCC-----CcEEEEECCC
Confidence 678888877532 3889998763222 2221 1 11111 222222 355677776543 3689999988
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCc--eeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGV--LLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY 471 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~--~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 471 (625)
. +....... . ..-++.+...++..+++++...... .-..+++||+.+.. ...... .+. .-.+++..
T Consensus 244 ~--~~~~~~~~--~--~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~~~--~~~--~~~~~~~~ 311 (433)
T 3bws_A 244 K--LEIRKTDK--I--GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK--LIDTIG--PPG--NKRHIVSG 311 (433)
T ss_dssp T--EEEEECCC--C--SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE--EEEEEE--EEE--CEEEEEEC
T ss_pred C--cEEEEecC--C--CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc--EEeecc--CCC--CcceEEEC
Confidence 7 54433221 1 1112232323333444444322211 12478899986544 222110 111 11123333
Q ss_pred CCc-EEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 472 GRT-KVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 472 ~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
.++ .+|+.++.+ ..+.+||+.
T Consensus 312 ~~g~~l~~~~~~~---------~~v~v~d~~ 333 (433)
T 3bws_A 312 NTENKIYVSDMCC---------SKIEVYDLK 333 (433)
T ss_dssp SSTTEEEEEETTT---------TEEEEEETT
T ss_pred CCCCEEEEEecCC---------CEEEEEECC
Confidence 333 677776542 678899987
No 101
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.54 E-value=0.44 Score=46.41 Aligned_cols=66 Identities=8% Similarity=-0.021 Sum_probs=32.9
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
+++||+.+... ....+++|++.+ .+++.+.......... ..++.. +++.+|+.+..+ +.+.+||+.
T Consensus 50 dg~l~~~~~~~----~~~~v~~~~~~~--g~~~~~~~~~~~~~~p-~~~a~spdg~~l~~~~~~~-----~~v~v~~~~ 116 (347)
T 3hfq_A 50 KDCLYSVDKED----DEGGIAAWQIDG--QTAHKLNTVVAPGTPP-AYVAVDEARQLVYSANYHK-----GTAEVMKIA 116 (347)
T ss_dssp TCEEEEEEEET----TEEEEEEEEEET--TEEEEEEEEEEESCCC-SEEEEETTTTEEEEEETTT-----TEEEEEEEC
T ss_pred CCeEEEEEecC----CCceEEEEEecC--CcEEEeeeeecCCCCC-EEEEECCCCCEEEEEeCCC-----CEEEEEEeC
Confidence 56677766421 123488999865 4665553211111111 122222 455677765321 357777774
No 102
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.50 E-value=0.32 Score=52.65 Aligned_cols=130 Identities=11% Similarity=0.073 Sum_probs=76.8
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCC-------ccceeEEEEcCCEEEEEccCCCCC
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPG-------RWGHTLSSLNGSWLVVFGGCGRQG 381 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~-------r~~~~~~~~~~~~iyv~GG~~~~~ 381 (625)
.+.++.++.||+.... +.++.+|..+-+..|+.-. ...... ....+.+ +.+++||+...
T Consensus 71 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~~~a-~~~~~v~v~~~----- 136 (677)
T 1kb0_A 71 ATPVVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDP-QIDRSTGFKGCCDVVNRGVA-LWKGKVYVGAW----- 136 (677)
T ss_dssp CCCEEETTEEEEECGG-------GCEEEEETTTTEEEEEECC-CCCGGGGGGSSSCSCCCCCE-EETTEEEEECT-----
T ss_pred eCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcC-CCCccccccccccCCCCCce-EECCEEEEEcC-----
Confidence 4456789999998762 2489999987667898532 111100 0112223 34677887643
Q ss_pred ccccEEEEECCCCCCEEEEcCC-CCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcC
Q 048754 382 LLNDVFVLDLDAKQPTWIEVSG-GAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIP 455 (625)
Q Consensus 382 ~~~~~~~~d~~t~~~~W~~~~~-~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 455 (625)
...++.+|..|++..|+.-.. ..........+. .+.++.+|+..+..+ ......++.||..+.+..|+.-.
T Consensus 137 -dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p-~v~~~~v~v~~~~~~-~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 137 -DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAP-RVFKGKVIIGNGGAE-YGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp -TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCC-EEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEES
T ss_pred -CCEEEEEECCCCCEEeeecCCcCcCcCcccccCc-EEECCEEEEEecccc-cCCCCEEEEEECCCCcEEEEecc
Confidence 146999999999888986432 111111111222 334667777443211 11235799999999988898654
No 103
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.50 E-value=0.45 Score=47.97 Aligned_cols=228 Identities=12% Similarity=0.131 Sum_probs=112.4
Q ss_pred CCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCc
Q 048754 332 DDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRS 411 (625)
Q Consensus 332 ~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~ 411 (625)
..++++|+... .-..+.... ... .+.+...+++.+++++.... ...++++|+.++ +...+... + . .
T Consensus 159 ~~i~i~d~~g~--~~~~l~~~~---~~v-~~~~~Spdg~~la~~s~~~~--~~~i~~~d~~tg--~~~~l~~~--~-~-~ 224 (415)
T 2hqs_A 159 YELRVSDYDGY--NQFVVHRSP---QPL-MSPAWSPDGSKLAYVTFESG--RSALVIQTLANG--AVRQVASF--P-R-H 224 (415)
T ss_dssp EEEEEEETTSC--SCEEEEEES---SCE-EEEEECTTSSEEEEEECTTS--SCEEEEEETTTC--CEEEEECC--S-S-C
T ss_pred ceEEEEcCCCC--CCEEEeCCC---Ccc-eeeEEcCCCCEEEEEEecCC--CcEEEEEECCCC--cEEEeecC--C-C-c
Confidence 46889998752 334332111 111 12222223344455544321 257999999988 55555432 1 1 1
Q ss_pred cceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCccc
Q 048754 412 WHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRL 490 (625)
Q Consensus 412 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~ 490 (625)
..+.+.. +++.+++.+.... ...++++|+.+.. ...+... + ....+.....+++.+++++... +
T Consensus 225 ~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~--~~~l~~~--~--~~~~~~~~spdg~~l~~~s~~~-g---- 289 (415)
T 2hqs_A 225 NGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQ--IRQVTDG--R--SNNTEPTWFPDSQNLAFTSDQA-G---- 289 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCC--EEECCCC--S--SCEEEEEECTTSSEEEEEECTT-S----
T ss_pred ccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCC--EEeCcCC--C--CcccceEECCCCCEEEEEECCC-C----
Confidence 1222222 4444554443221 2479999987655 5555431 1 1112233333444444433211 1
Q ss_pred ccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCe
Q 048754 491 RSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSW 570 (625)
Q Consensus 491 ~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W 570 (625)
...+|.+|+.+ ..-..+... ...........+++.+++++...+ ...++++|+ .+...
T Consensus 290 -~~~i~~~d~~~--~~~~~l~~~--------------~~~~~~~~~spdG~~l~~~~~~~g---~~~i~~~d~--~~~~~ 347 (415)
T 2hqs_A 290 -RPQVYKVNING--GAPQRITWE--------------GSQNQDADVSSDGKFMVMVSSNGG---QQHIAKQDL--ATGGV 347 (415)
T ss_dssp -SCEEEEEETTS--SCCEECCCS--------------SSEEEEEEECTTSSEEEEEEECSS---CEEEEEEET--TTCCE
T ss_pred -CcEEEEEECCC--CCEEEEecC--------------CCcccCeEECCCCCEEEEEECcCC---ceEEEEEEC--CCCCE
Confidence 25789999874 233332211 112222333346666666554321 358999999 56666
Q ss_pred EEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccC
Q 048754 571 RILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 571 ~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
..+.. . . ...+....++++.+++++.++. ...+|+++++.
T Consensus 348 ~~l~~--~---~-~~~~~~~spdg~~l~~~s~~~~---~~~l~~~d~~g 387 (415)
T 2hqs_A 348 QVLSS--T---F-LDETPSLAPNGTMVIYSSSQGM---GSVLNLVSTDG 387 (415)
T ss_dssp EECCC--S---S-SCEEEEECTTSSEEEEEEEETT---EEEEEEEETTS
T ss_pred EEecC--C---C-CcCCeEEcCCCCEEEEEEcCCC---ccEEEEEECCC
Confidence 55432 1 1 2334445566777777775443 24688888753
No 104
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.50 E-value=0.31 Score=45.12 Aligned_cols=150 Identities=14% Similarity=0.054 Sum_probs=85.1
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecC
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
+.++.+|+..|..+ .+.++|+.|++..-+.+ |..-++. ++...++++|+.... .+.+++||++
T Consensus 62 ~~~~~Ly~stG~~g-----~v~~iD~~Tgkv~~~~l-----~~~~Fge-Git~~g~~Ly~ltw~------~~~v~V~D~~ 124 (268)
T 3nok_A 62 FHQGHFFESTGHQG-----TLRQLSLESAQPVWMER-----LGNIFAE-GLASDGERLYQLTWT------EGLLFTWSGM 124 (268)
T ss_dssp EETTEEEEEETTTT-----EEEECCSSCSSCSEEEE-----CTTCCEE-EEEECSSCEEEEESS------SCEEEEEETT
T ss_pred EECCEEEEEcCCCC-----EEEEEECCCCcEEeEEC-----CCCccee-EEEEeCCEEEEEEcc------CCEEEEEECC
Confidence 45789999999654 38899999985433332 2222333 345567899997542 2589999976
Q ss_pred CCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC
Q 048754 446 TDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 446 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~ 525 (625)
+.+. -..++. +-.+.+++.-+ ++||+.-| .+.++++|+++. ..-..+... ..
T Consensus 125 Tl~~-~~ti~~-----~~eGwGLt~Dg-~~L~vSdG----------s~~l~~iDp~T~-~v~~~I~V~----------~~ 176 (268)
T 3nok_A 125 PPQR-ERTTRY-----SGEGWGLCYWN-GKLVRSDG----------GTMLTFHEPDGF-ALVGAVQVK----------LR 176 (268)
T ss_dssp TTEE-EEEEEC-----SSCCCCEEEET-TEEEEECS----------SSEEEEECTTTC-CEEEEEECE----------ET
T ss_pred cCcE-EEEEeC-----CCceeEEecCC-CEEEEECC----------CCEEEEEcCCCC-eEEEEEEeC----------CC
Confidence 6331 122232 22234555444 49999865 278999999841 122222221 01
Q ss_pred CCCccce-EEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCC
Q 048754 526 PPPRLDH-VAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPS 569 (625)
Q Consensus 526 p~~r~~~-~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~ 569 (625)
+.+.... -+... +++||+-- ...++|.+.|+ .+.+
T Consensus 177 g~~v~~lNeLe~~-dG~lyanv------w~s~~I~vIDp--~TG~ 212 (268)
T 3nok_A 177 GQPVELINELECA-NGVIYANI------WHSSDVLEIDP--ATGT 212 (268)
T ss_dssp TEECCCEEEEEEE-TTEEEEEE------TTCSEEEEECT--TTCB
T ss_pred CcccccccccEEe-CCEEEEEE------CCCCeEEEEeC--CCCc
Confidence 1111111 12223 78888532 12579999999 4544
No 105
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=96.45 E-value=0.00042 Score=57.43 Aligned_cols=52 Identities=10% Similarity=0.038 Sum_probs=37.8
Q ss_pred hhhcccccccc---ccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhh
Q 048754 183 ENCNQQYDQSA---QYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 183 ~~~~~~~~~~~---~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~ 234 (625)
++++..++.+. .++|.+..++++|+++++++||+ +|++|.++..++++++..
T Consensus 16 ~~~~~l~~~~~d~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~ 71 (130)
T 1d06_A 16 AHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRH 71 (130)
T ss_dssp SCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHH
T ss_pred HHHHHHHhhCcCeEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHH
Confidence 34444444433 34477777889999999999999 889988888888776543
No 106
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.45 E-value=0.68 Score=50.10 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=74.6
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCC---CC--ccceEEEEcCCEEEEEcCcCCCCceeceEE
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPL---PR--SWHSSCIIEGSKLVVSGGCTDAGVLLSDTY 440 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~---~r--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 440 (625)
+.++.||+... .+.++.+|..|++..|+.-....... .. .......+.++.+|+... -..++
T Consensus 75 v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg~l~ 141 (677)
T 1kb0_A 75 VVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DGRLI 141 (677)
T ss_dssp EETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TSEEE
T ss_pred EECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CCEEE
Confidence 34778998865 25699999999988898654321000 00 011223445768888532 14689
Q ss_pred EEecCCCCCceEEcCCCCCCC-CCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEee
Q 048754 441 LLDLTTDKPMWREIPTSWSPP-SRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLE 511 (625)
Q Consensus 441 ~~d~~~~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~ 511 (625)
.+|..+.+..|+.-.....+. .....+.++.++ .+|+..+....+. ...++.||..+....|+.-.
T Consensus 142 alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~~~----~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 142 ALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGV----RGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp EEETTTCCEEEEEETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCC----BCEEEEEETTTCCEEEEEES
T ss_pred EEECCCCCEEeeecCCcCcCcCcccccCcEEECC-EEEEEecccccCC----CCEEEEEECCCCcEEEEecc
Confidence 999999988998753201111 112223334444 7766543221111 36789999987777898644
No 107
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.44 E-value=0.69 Score=44.90 Aligned_cols=157 Identities=13% Similarity=0.045 Sum_probs=76.2
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.+|+...........+.++++|+.+....+ .+..... -+..+.. +++++|+.++.+ +.++++|+.+
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~~~-----~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~ 120 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ-AIHNDLK-----PFGATINNTTQTLWFGNTVN-----SAVTAIDAKT 120 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTCCEEE-EEEESSC-----CCSEEEETTTTEEEEEETTT-----TEEEEEETTT
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE-EEecCCC-----cceEEECCCCCEEEEEecCC-----CEEEEEeCCC
Confidence 45787776432211123458999987632122 2211111 1233333 455688877643 3689999988
Q ss_pred CCCEEE-EcCCCCCCC---CCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceE
Q 048754 394 KQPTWI-EVSGGAPPL---PRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSL 468 (625)
Q Consensus 394 ~~~~W~-~~~~~~~p~---~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~ 468 (625)
.+..+. .......|. +..-+..+.. +++.+|+.+... ...++++|+.+.+..+. ++.. ...-+++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~-~~~~----~~~~~~~ 190 (353)
T 3vgz_A 121 GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTA-IQNT----GKMSTGL 190 (353)
T ss_dssp CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEE-ECCC----CTTCCCC
T ss_pred CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEE-ecCC----CCccceE
Confidence 844333 222111110 1111223333 556677765211 14689999866543222 2211 1111233
Q ss_pred EEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 469 SVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 469 ~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
+... ++.+|+... ...++++|+.+
T Consensus 191 ~~s~dg~~l~~~~~----------~~~i~~~d~~~ 215 (353)
T 3vgz_A 191 ALDSEGKRLYTTNA----------DGELITIDTAD 215 (353)
T ss_dssp EEETTTTEEEEECT----------TSEEEEEETTT
T ss_pred EECCCCCEEEEEcC----------CCeEEEEECCC
Confidence 3433 336776543 25788999884
No 108
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=96.44 E-value=0.00098 Score=53.55 Aligned_cols=44 Identities=9% Similarity=-0.013 Sum_probs=37.5
Q ss_pred ccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHH
Q 048754 194 QYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIG 237 (625)
Q Consensus 194 ~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~ 237 (625)
.+++.++.++|+|+++++++||+ +|++|..+++++||+|...+.
T Consensus 13 ~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~ 57 (111)
T 2vlg_A 13 AVLASNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVE 57 (111)
T ss_dssp EEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHH
T ss_pred EEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHH
Confidence 34466677779999999999999 889999999999999977653
No 109
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.41 E-value=0.34 Score=48.11 Aligned_cols=228 Identities=11% Similarity=0.017 Sum_probs=108.2
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
+.+|+.|+.+. .++++|+.+ .+-...-... . .-.+++.. +++++|+.|+.+ ..+.++|+.++
T Consensus 2 ~~l~vs~~~d~------~v~v~d~~~--~~~~~~~~~~--~--~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~ 64 (391)
T 1l0q_A 2 TFAYIANSESD------NISVIDVTS--NKVTATIPVG--S--NPMGAVISPDGTKVYVANAHS-----NDVSIIDTATN 64 (391)
T ss_dssp EEEEEEETTTT------EEEEEETTT--TEEEEEEECS--S--SEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTT
T ss_pred CEEEEEcCCCC------EEEEEECCC--CeEEEEeecC--C--CcceEEECCCCCEEEEECCCC-----CeEEEEECCCC
Confidence 35777776532 388999876 3332211111 1 11223322 455677777543 46899999887
Q ss_pred CCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECC
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGR 473 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 473 (625)
+....-.. +. .-.+.+.. +++.+|+.+... ..+.+||+.+.. ...... . ...-.+++...+
T Consensus 65 --~~~~~~~~--~~--~v~~~~~spdg~~l~~~~~~~------~~v~v~d~~~~~--~~~~~~--~--~~~~~~~~~s~d 126 (391)
T 1l0q_A 65 --NVIATVPA--GS--SPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNT--VAGTVK--T--GKSPLGLALSPD 126 (391)
T ss_dssp --EEEEEEEC--SS--SEEEEEECTTSSEEEEEETTT------TEEEEEETTTTE--EEEEEE--C--SSSEEEEEECTT
T ss_pred --eEEEEEEC--CC--CccceEECCCCCEEEEEECCC------CEEEEEECCCCe--EEEEEe--C--CCCcceEEECCC
Confidence 44322111 11 11222222 344566655421 468999987654 222111 1 111133434333
Q ss_pred c-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCC-EEEEEecCCCC
Q 048754 474 T-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG-RIIIFGGSIAG 551 (625)
Q Consensus 474 ~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~ 551 (625)
+ .+|+.++.+ ..++++|+.+ .+....... ......+....++ .|++.++.
T Consensus 127 g~~l~~~~~~~---------~~v~~~d~~~--~~~~~~~~~--------------~~~~~~~~~~~dg~~l~~~~~~--- 178 (391)
T 1l0q_A 127 GKKLYVTNNGD---------KTVSVINTVT--KAVINTVSV--------------GRSPKGIAVTPDGTKVYVANFD--- 178 (391)
T ss_dssp SSEEEEEETTT---------TEEEEEETTT--TEEEEEEEC--------------CSSEEEEEECTTSSEEEEEETT---
T ss_pred CCEEEEEeCCC---------CEEEEEECCC--CcEEEEEec--------------CCCcceEEECCCCCEEEEEeCC---
Confidence 3 576776542 6788999873 333322211 1111233333344 56666553
Q ss_pred CCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccC
Q 048754 552 LHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 552 ~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
...+.++|+ .+......... ...-.+++...++..+++++.+.. -+.++++++.+
T Consensus 179 ---~~~v~~~d~--~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~~---~~~v~~~d~~~ 233 (391)
T 1l0q_A 179 ---SMSISVIDT--VTNSVIDTVKV-----EAAPSGIAVNPEGTKAYVTNVDKY---FNTVSMIDTGT 233 (391)
T ss_dssp ---TTEEEEEET--TTTEEEEEEEC-----SSEEEEEEECTTSSEEEEEEECSS---CCEEEEEETTT
T ss_pred ---CCEEEEEEC--CCCeEEEEEec-----CCCccceEECCCCCEEEEEecCcC---CCcEEEEECCC
Confidence 357999998 44433322211 111123334445555555543211 24556666543
No 110
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=96.38 E-value=0.59 Score=45.82 Aligned_cols=114 Identities=11% Similarity=0.087 Sum_probs=52.1
Q ss_pred EEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccE--EEEECCCC
Q 048754 317 RLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDV--FVLDLDAK 394 (625)
Q Consensus 317 ~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~--~~~d~~t~ 394 (625)
..+++|.+.... ...+++|.++..+.+++.+... ......+.+..-+++.||+.+..+.. ...+ |.++..++
T Consensus 14 ~~~~vg~y~~~~--~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~--~~~v~~~~~~~~~g 87 (361)
T 3scy_A 14 LTMLVGTYTSGN--SKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKD--QAAVSAFAFDKEKG 87 (361)
T ss_dssp EEEEEEECCSSS--CCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSST--TCEEEEEEEETTTT
T ss_pred eEEEEEeccCCC--CCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCC--CCcEEEEEEeCCCC
Confidence 344556654321 3446666665444666655322 11111111222235567776653211 1244 44555545
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
....+.......... .....+++.+|+.+.. ...+.+|++.+
T Consensus 88 --~~~~~~~~~~~~~~p--~~~~~dg~~l~~~~~~------~~~v~~~~~~~ 129 (361)
T 3scy_A 88 --TLHLLNTQKTMGADP--CYLTTNGKNIVTANYS------GGSITVFPIGQ 129 (361)
T ss_dssp --EEEEEEEEECSSSCE--EEEEECSSEEEEEETT------TTEEEEEEBCT
T ss_pred --cEEEeeEeccCCCCc--EEEEECCCEEEEEECC------CCEEEEEEeCC
Confidence 666554321011111 2222367677775431 13677888754
No 111
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.35 E-value=0.32 Score=44.52 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=69.9
Q ss_pred EEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCc
Q 048754 415 SCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGE 494 (625)
Q Consensus 415 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 494 (625)
+..++++.+|+-.|.... +.+..+|+++... -..++ .+...++.+++..++ +||+.... .+.
T Consensus 25 GL~~~~~~LyestG~~g~----S~v~~vD~~tgkv-~~~~~---l~~~~fgeGi~~~~~-~ly~ltw~---------~~~ 86 (243)
T 3mbr_X 25 GLFYLRGHLYESTGETGR----SSVRKVDLETGRI-LQRAE---VPPPYFGAGIVAWRD-RLIQLTWR---------NHE 86 (243)
T ss_dssp EEEEETTEEEEEECCTTS----CEEEEEETTTCCE-EEEEE---CCTTCCEEEEEEETT-EEEEEESS---------SSE
T ss_pred cEEEECCEEEEECCCCCC----ceEEEEECCCCCE-EEEEe---CCCCcceeEEEEeCC-EEEEEEee---------CCE
Confidence 445567899998885432 4788999987652 22332 344556667777765 99998544 378
Q ss_pred eEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCC
Q 048754 495 SYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPS 569 (625)
Q Consensus 495 ~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~ 569 (625)
+++||++ +-+.+... +.+..+-..+ ..+++||+.=| .+.++.+|+ .+.+
T Consensus 87 v~v~D~~----tl~~~~ti------------~~~~~Gwglt-~dg~~L~vSdg-------s~~l~~iDp--~t~~ 135 (243)
T 3mbr_X 87 GFVYDLA----TLTPRARF------------RYPGEGWALT-SDDSHLYMSDG-------TAVIRKLDP--DTLQ 135 (243)
T ss_dssp EEEEETT----TTEEEEEE------------ECSSCCCEEE-ECSSCEEEECS-------SSEEEEECT--TTCC
T ss_pred EEEEECC----cCcEEEEE------------eCCCCceEEe-eCCCEEEEECC-------CCeEEEEeC--CCCe
Confidence 9999988 33344443 1222333443 43667888744 458999999 4544
No 112
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.34 E-value=0.56 Score=46.48 Aligned_cols=144 Identities=14% Similarity=0.089 Sum_probs=72.9
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
+..||+.|+.+. .+.++|+.+ .+....-... . .-.+++.. ++++||+.|..+ +.+++||+.+
T Consensus 43 g~~l~~~~~~d~------~i~v~d~~~--~~~~~~~~~~--~--~v~~~~~spdg~~l~~~~~~~-----~~v~v~d~~~ 105 (391)
T 1l0q_A 43 GTKVYVANAHSN------DVSIIDTAT--NNVIATVPAG--S--SPQGVAVSPDGKQVYVTNMAS-----STLSVIDTTS 105 (391)
T ss_dssp SSEEEEEEGGGT------EEEEEETTT--TEEEEEEECS--S--SEEEEEECTTSSEEEEEETTT-----TEEEEEETTT
T ss_pred CCEEEEECCCCC------eEEEEECCC--CeEEEEEECC--C--CccceEECCCCCEEEEEECCC-----CEEEEEECCC
Confidence 456777776432 488999876 3333221111 1 11222222 355677766432 3699999988
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG 472 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 472 (625)
+ +....... . ..-.+.+.. +++.+|+.++.. ..++++|+.+.. ....-.. ...-.+++...
T Consensus 106 ~--~~~~~~~~--~--~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~--~~~~~~~----~~~~~~~~~~~ 167 (391)
T 1l0q_A 106 N--TVAGTVKT--G--KSPLGLALSPDGKKLYVTNNGD------KTVSVINTVTKA--VINTVSV----GRSPKGIAVTP 167 (391)
T ss_dssp T--EEEEEEEC--S--SSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTE--EEEEEEC----CSSEEEEEECT
T ss_pred C--eEEEEEeC--C--CCcceEEECCCCCEEEEEeCCC------CEEEEEECCCCc--EEEEEec----CCCcceEEECC
Confidence 7 44322211 1 111222222 444676766532 378899986654 3222111 11112333333
Q ss_pred C-cEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 473 R-TKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 473 ~-~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
+ +.+|+.++.+ ..++++|+.+
T Consensus 168 dg~~l~~~~~~~---------~~v~~~d~~~ 189 (391)
T 1l0q_A 168 DGTKVYVANFDS---------MSISVIDTVT 189 (391)
T ss_dssp TSSEEEEEETTT---------TEEEEEETTT
T ss_pred CCCEEEEEeCCC---------CEEEEEECCC
Confidence 3 3676765542 5788999873
No 113
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.33 E-value=0.23 Score=48.46 Aligned_cols=144 Identities=9% Similarity=0.035 Sum_probs=65.5
Q ss_pred CeEEEeccCCCCceEEcccCC-CCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCc
Q 048754 333 DTFVLNLDAANPEWRRVSVKS-SPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRS 411 (625)
Q Consensus 333 ~~~~~~~~~~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~ 411 (625)
.+++|.++..+.++..+.... ...| ..++...++++|+.+..+ -...+++||+.++ .+..+..........
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~~~~~~p---~~~a~spdg~l~~~~~~~---~~~~v~~~~~~~g--~~~~~~~~~~~~~~p 88 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLLAATQNP---TYLALSAKDCLYSVDKED---DEGGIAAWQIDGQ--TAHKLNTVVAPGTPP 88 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEEECSCC---CCEEECTTCEEEEEEEET---TEEEEEEEEEETT--EEEEEEEEEEESCCC
T ss_pred CEEEEEEcCCCCeEEEeeeeeccCCc---ceEEEccCCeEEEEEecC---CCceEEEEEecCC--cEEEeeeeecCCCCC
Confidence 355555544335666542111 1111 123333355677765421 1256899999777 665543210011111
Q ss_pred cceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEc---CCC-CCCCCC----CcceEEEECCcEEEEEcCC
Q 048754 412 WHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREI---PTS-WSPPSR----LGHSLSVYGRTKVLMFGGL 482 (625)
Q Consensus 412 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~---~~~-~~p~~r----~~~~~~~~~~~~l~v~GG~ 482 (625)
...+.. +++.+|+.+.. . ..+.+|++.... ....+ ... ..|.+| .-++++...++++|+.+..
T Consensus 89 -~~~a~spdg~~l~~~~~~-~-----~~v~v~~~~~~g-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~ 160 (347)
T 3hfq_A 89 -AYVAVDEARQLVYSANYH-K-----GTAEVMKIAADG-ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG 160 (347)
T ss_dssp -SEEEEETTTTEEEEEETT-T-----TEEEEEEECTTS-CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT
T ss_pred -EEEEECCCCCEEEEEeCC-C-----CEEEEEEeCCCC-CeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC
Confidence 222233 45556665421 1 356777764211 13222 111 111111 1233444445567765432
Q ss_pred cCCCCcccccCceEEEEcC
Q 048754 483 AKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 483 ~~~~~~~~~~~~~~~~d~~ 501 (625)
.+.+++|++.
T Consensus 161 ---------~~~v~~~~~~ 170 (347)
T 3hfq_A 161 ---------SDKVYVYNVS 170 (347)
T ss_dssp ---------TTEEEEEEEC
T ss_pred ---------CCEEEEEEEC
Confidence 2578888887
No 114
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.32 E-value=1 Score=45.24 Aligned_cols=245 Identities=16% Similarity=0.023 Sum_probs=113.3
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccC-CCCCCccc-eeEEEEcCCEEEEEccCCCCCccccEEEEECC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVK-SSPPGRWG-HTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-~~p~~r~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
++.+++.++.+. .++++|+.+ .+....... ....+... .+++...++.+++.|+.+ ..+.+||+.
T Consensus 133 ~~~~~~~~~~~~------~i~~~d~~~--g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d-----~~v~~~d~~ 199 (433)
T 3bws_A 133 NTRLAIPLLEDE------GMDVLDINS--GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA-----NAVHVFDLK 199 (433)
T ss_dssp SSEEEEEBTTSS------SEEEEETTT--CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----TEEEEEETT
T ss_pred CCeEEEEeCCCC------eEEEEECCC--CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----CEEEEEECC
Confidence 678888876532 389999887 344432111 00011111 122223456788877643 368999998
Q ss_pred CCCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE
Q 048754 393 AKQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY 471 (625)
Q Consensus 393 t~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 471 (625)
+.+..+. +.. ..... .+.+.. +++.+|+.++.+ ..+.+||+.+.. ....-. ....-.+++..
T Consensus 200 ~~~~~~~-~~~---~~~~~-~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~~~--~~~~~~----~~~~~~~~~~~ 262 (433)
T 3bws_A 200 TLAYKAT-VDL---TGKWS-KILLYDPIRDLVYCSNWIS------EDISVIDRKTKL--EIRKTD----KIGLPRGLLLS 262 (433)
T ss_dssp TCCEEEE-EEC---SSSSE-EEEEEETTTTEEEEEETTT------TEEEEEETTTTE--EEEECC----CCSEEEEEEEC
T ss_pred CceEEEE-EcC---CCCCe-eEEEEcCCCCEEEEEecCC------CcEEEEECCCCc--EEEEec----CCCCceEEEEc
Confidence 7633332 221 11111 222233 455666766422 368899986644 322211 11112333343
Q ss_pred CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCC-EEEEEecCCC
Q 048754 472 GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG-RIIIFGGSIA 550 (625)
Q Consensus 472 ~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~ 550 (625)
.+++.+++++....... .....+++||+.+. +-...... + .....+....++ .+|+.++.
T Consensus 263 ~~g~~l~~~~~~~~~~~-~~dg~i~~~d~~~~--~~~~~~~~------------~--~~~~~~~~~~~g~~l~~~~~~-- 323 (433)
T 3bws_A 263 KDGKELYIAQFSASNQE-SGGGRLGIYSMDKE--KLIDTIGP------------P--GNKRHIVSGNTENKIYVSDMC-- 323 (433)
T ss_dssp TTSSEEEEEEEESCTTC-SCCEEEEEEETTTT--EEEEEEEE------------E--ECEEEEEECSSTTEEEEEETT--
T ss_pred CCCCEEEEEECCCCccc-cCCCeEEEEECCCC--cEEeeccC------------C--CCcceEEECCCCCEEEEEecC--
Confidence 34444444443221110 00257889998742 22222111 0 011122222234 67777654
Q ss_pred CCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCC---------CccCceEEEEccC
Q 048754 551 GLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEE---------WVLNELHELCLAS 619 (625)
Q Consensus 551 ~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~---------~~~~d~~~~~~~~ 619 (625)
...+.+||+ .+.+-...- +....-.+++...+++.+++++..... ..-..++++++.+
T Consensus 324 ----~~~v~v~d~--~~~~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 324 ----CSKIEVYDL--KEKKVQKSI-----PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp ----TTEEEEEET--TTTEEEEEE-----ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred ----CCEEEEEEC--CCCcEEEEe-----cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 458999998 333322221 111112344444555555555443211 0123677777754
No 115
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.79 Score=44.87 Aligned_cols=232 Identities=8% Similarity=0.010 Sum_probs=109.4
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cC--CEEEEEccCCCCCccccEEEEECC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NG--SWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
+.+++.|+.+. .+.+||+.. ..+..+..-... ...-.+..+ .. +.+++.|+.++ .+.+||+.
T Consensus 23 ~~~l~~~~~dg------~i~iw~~~~--~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~~~dg-----~v~iwd~~ 87 (379)
T 3jrp_A 23 GKRLATCSSDK------TIKIFEVEG--ETHKLIDTLTGH--EGPVWRVDWAHPKFGTILASCSYDG-----KVLIWKEE 87 (379)
T ss_dssp SSEEEEEETTS------CEEEEEEET--TEEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETTS-----CEEEEEEE
T ss_pred CCEEEEEECCC------cEEEEecCC--CcceeeeEecCC--CCcEEEEEeCCCCCCCEEEEeccCC-----EEEEEEcC
Confidence 44555665432 278888875 345443211111 111122223 12 35666676543 58889998
Q ss_pred CCCCEEEEcCCCCCCCCCccceEEEE-cC--CEEEEEcCcCCCCceeceEEEEecCCCCCc-eEEcCCCCCCCCCCcceE
Q 048754 393 AKQPTWIEVSGGAPPLPRSWHSSCII-EG--SKLVVSGGCTDAGVLLSDTYLLDLTTDKPM-WREIPTSWSPPSRLGHSL 468 (625)
Q Consensus 393 t~~~~W~~~~~~~~p~~r~~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~-W~~~~~~~~p~~r~~~~~ 468 (625)
++ .|..+...... ...-.++.+ .+ +.+++.|+.+ ..+.+||+.+.... -..+.. ...+ -.++
T Consensus 88 ~~--~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~--~~~~--v~~~ 153 (379)
T 3jrp_A 88 NG--RWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDA--HAIG--VNSA 153 (379)
T ss_dssp TT--EEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEEC--CTTC--EEEE
T ss_pred CC--ceeEeeeecCC--CcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecC--CCCc--eEEE
Confidence 88 76654432111 111222333 22 3566666532 36788887554211 111111 1111 1122
Q ss_pred EEEC-------------CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEE
Q 048754 469 SVYG-------------RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAV 535 (625)
Q Consensus 469 ~~~~-------------~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~ 535 (625)
.... ++.+++.|+.+ ..+.+||+.+....|..+... ........++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~------------~~h~~~v~~~ 212 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSDAQTYVLESTL------------EGHSDWVRDV 212 (379)
T ss_dssp EECCCC----------CTTCEEEEEETT---------SCEEEEEEETTTTEEEEEEEE------------CCCSSCEEEE
T ss_pred EEcCccccccccccCCCCCCEEEEEeCC---------CeEEEEEecCCCcceeeEEEE------------ecccCcEeEE
Confidence 2222 34677777653 567788876544456655544 1111222233
Q ss_pred Ee-cC---CEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 536 SM-PC---GRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 536 ~~-~~---~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
.+ .+ +.+++.|+.+ ..+.+||+......+...... .......-.++...+++.+++.|+.++
T Consensus 213 ~~sp~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg 278 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVSQD------RTCIIWTQDNEQGPWKKTLLK-EEKFPDVLWRASWSLSGNVLALSGGDN 278 (379)
T ss_dssp EECCCCSSSEEEEEEETT------SCEEEEEESSTTSCCEEEESS-SSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred EECCCCCCCCeEEEEeCC------CEEEEEeCCCCCccceeeeec-cccCCCcEEEEEEcCCCCEEEEecCCC
Confidence 33 34 6888888753 357788874233333333211 111111123334445667777777644
No 116
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.18 E-value=0.2 Score=46.49 Aligned_cols=109 Identities=14% Similarity=0.154 Sum_probs=67.4
Q ss_pred eEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccC
Q 048754 414 SSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSG 493 (625)
Q Consensus 414 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 493 (625)
.+..++++.+|+..|... .+..+|+++....-+. .+...++.+.+..++ +||+.... .+
T Consensus 58 qGL~~~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~-----l~~~~FgeGit~~g~-~Ly~ltw~---------~~ 116 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQG------TLRQLSLESAQPVWME-----RLGNIFAEGLASDGE-RLYQLTWT---------EG 116 (268)
T ss_dssp EEEEEETTEEEEEETTTT------EEEECCSSCSSCSEEE-----ECTTCCEEEEEECSS-CEEEEESS---------SC
T ss_pred ceEEEECCEEEEEcCCCC------EEEEEECCCCcEEeEE-----CCCCcceeEEEEeCC-EEEEEEcc---------CC
Confidence 344566889999888432 3888999887644433 222334455666555 99998553 37
Q ss_pred ceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCC
Q 048754 494 ESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPS 569 (625)
Q Consensus 494 ~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~ 569 (625)
.+++||+++ -+.+...+ .+..+...+ ..+++||+.-| .+.++.+|+ .+.+
T Consensus 117 ~v~V~D~~T----l~~~~ti~------------~~~eGwGLt-~Dg~~L~vSdG-------s~~l~~iDp--~T~~ 166 (268)
T 3nok_A 117 LLFTWSGMP----PQRERTTR------------YSGEGWGLC-YWNGKLVRSDG-------GTMLTFHEP--DGFA 166 (268)
T ss_dssp EEEEEETTT----TEEEEEEE------------CSSCCCCEE-EETTEEEEECS-------SSEEEEECT--TTCC
T ss_pred EEEEEECCc----CcEEEEEe------------CCCceeEEe-cCCCEEEEECC-------CCEEEEEcC--CCCe
Confidence 899999883 33444331 112233333 33778888754 458999999 4543
No 117
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.16 E-value=0.64 Score=49.10 Aligned_cols=128 Identities=20% Similarity=0.225 Sum_probs=73.8
Q ss_pred EcCCEEEEEccCCCCCccccEEEEEC-CCCCCEEEEcCCCCCC-C--CC--ccceEEEEcCCEEEEEcCcCCCCceeceE
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDL-DAKQPTWIEVSGGAPP-L--PR--SWHSSCIIEGSKLVVSGGCTDAGVLLSDT 439 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~-~t~~~~W~~~~~~~~p-~--~r--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 439 (625)
+.++.||+.... .+.++.+|. .+++..|+.-...... . .. .......+.++++|+... -..+
T Consensus 60 v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l 127 (571)
T 2ad6_A 60 VIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------NGHL 127 (571)
T ss_dssp EETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEE
T ss_pred EECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------CCEE
Confidence 347789988652 246999999 8998899965432100 0 00 001122344668888533 1368
Q ss_pred EEEecCCCCCceEEcCCCCCCCC-CCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEee
Q 048754 440 YLLDLTTDKPMWREIPTSWSPPS-RLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLE 511 (625)
Q Consensus 440 ~~~d~~~~~~~W~~~~~~~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~ 511 (625)
+.+|..+.+..|+.-... .+.. ....+.++.++ .+|+-.+....+. ...++.||..+....|+.-.
T Consensus 128 ~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~g-~v~vg~~~~~~~~----~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 128 LALDAKTGKINWEVEVCD-PKVGSTLTQAPFVAKD-TVLMGCSGAELGV----RGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EEEETTTCCEEEEEECCC-GGGTCBCCSCCEEETT-EEEEECBCGGGTC----CCEEEEEETTTCCEEEEEES
T ss_pred EEEECCCCCEEEEecCCC-CCccceeccCCEEECC-EEEEEecCCccCC----CCEEEEEECCCCcEEEEEcc
Confidence 999999998889864321 1111 11223334444 7776543211111 26789999987777897543
No 118
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.12 E-value=0.75 Score=48.58 Aligned_cols=132 Identities=13% Similarity=0.173 Sum_probs=76.1
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEec-cCCCCceEEcccCCCC-C--Cc---cceeEEEEcCCEEEEEccCCCCC
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNL-DAANPEWRRVSVKSSP-P--GR---WGHTLSSLNGSWLVVFGGCGRQG 381 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~-~~~~~~W~~~~~~~~p-~--~r---~~~~~~~~~~~~iyv~GG~~~~~ 381 (625)
.+.++.++.||+.... .+.++++|. .+-+..|+.-...... . +. ...+.+ +.+++||+...
T Consensus 56 ~~P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~~~----- 123 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLA-YGAGQIVKKQA----- 123 (571)
T ss_dssp SCCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCE-EETTEEEEECT-----
T ss_pred cccEEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccE-EECCEEEEEeC-----
Confidence 4556789999998763 134999999 7766789853211100 0 00 111223 44678887743
Q ss_pred ccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcC
Q 048754 382 LLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIP 455 (625)
Q Consensus 382 ~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 455 (625)
...++.+|..|++..|+.-............+.++. ++.+|+-.+..+ ......++.||..+.+..|+.-.
T Consensus 124 -dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 124 -NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAE-LGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp -TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGG-GTCCCEEEEEETTTCCEEEEEES
T ss_pred -CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCc-cCCCCEEEEEECCCCcEEEEEcc
Confidence 236999999999889985432110000111222334 667777433111 01235789999999888897643
No 119
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.08 E-value=0.15 Score=47.21 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=65.9
Q ss_pred eEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccC
Q 048754 414 SSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSG 493 (625)
Q Consensus 414 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 493 (625)
.+..+.++.+|+..|... .+.+..+|+++.+. -..++ .+...++.+++..++ +||+.... .+
T Consensus 46 qGL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv-~~~~~---l~~~~FgeGit~~g~-~ly~ltw~---------~~ 107 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNG----RSSIRKVDIESGKT-LQQIE---LGKRYFGEGISDWKD-KIVGLTWK---------NG 107 (262)
T ss_dssp EEEEEETTEEEEEEEETT----EEEEEEECTTTCCE-EEEEE---CCTTCCEEEEEEETT-EEEEEESS---------SS
T ss_pred ceEEEECCEEEEECCCCC----CceEEEEECCCCcE-EEEEe---cCCccceeEEEEeCC-EEEEEEee---------CC
Confidence 344455779999888532 24788999987662 22333 343445566666665 99998553 37
Q ss_pred ceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 494 ESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 494 ~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
.+++||+++ -+.+... +.+..+-..+ ..++.||+.-| .+.++.+|+.
T Consensus 108 ~v~v~D~~t----~~~~~ti------------~~~~eG~glt-~dg~~L~~SdG-------s~~i~~iDp~ 154 (262)
T 3nol_A 108 LGFVWNIRN----LRQVRSF------------NYDGEGWGLT-HNDQYLIMSDG-------TPVLRFLDPE 154 (262)
T ss_dssp EEEEEETTT----CCEEEEE------------ECSSCCCCEE-ECSSCEEECCS-------SSEEEEECTT
T ss_pred EEEEEECcc----CcEEEEE------------ECCCCceEEe-cCCCEEEEECC-------CCeEEEEcCC
Confidence 899999983 2334333 1111223333 33667777643 4579999993
No 120
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=96.05 E-value=0.47 Score=44.74 Aligned_cols=181 Identities=12% Similarity=0.062 Sum_probs=99.3
Q ss_pred CEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 369 SWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 369 ~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
+++++.|..+ +.++++|..+++..|+.-... ....|......++.+++.+ .+.++.||+ +.+
T Consensus 5 ~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~~----~~~~~~~~~~pdG~ilvs~--------~~~V~~~d~-~G~ 66 (276)
T 3no2_A 5 QHLLVGGSGW-----NKIAIINKDTKEIVWEYPLEK----GWECNSVAATKAGEILFSY--------SKGAKMITR-DGR 66 (276)
T ss_dssp CEEEEECTTC-----SEEEEEETTTTEEEEEEECCT----TCCCCEEEECTTSCEEEEC--------BSEEEEECT-TSC
T ss_pred CcEEEeeCCC-----CEEEEEECCCCeEEEEeCCCc----cCCCcCeEECCCCCEEEeC--------CCCEEEECC-CCC
Confidence 4677776533 468999998997788855421 1122455555566777732 135899998 677
Q ss_pred CceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCC
Q 048754 449 PMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPP 528 (625)
Q Consensus 449 ~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~ 528 (625)
..|+.-.. .....+++....++.+++..... ...++.+|++. ...|+.-..... ..+.
T Consensus 67 ~~W~~~~~----~~~~~~~~~~~~dG~~lv~~~~~--------~~~v~~vd~~G-k~l~~~~~~~~~--------~~~~- 124 (276)
T 3no2_A 67 ELWNIAAP----AGCEMQTARILPDGNALVAWCGH--------PSTILEVNMKG-EVLSKTEFETGI--------ERPH- 124 (276)
T ss_dssp EEEEEECC----TTCEEEEEEECTTSCEEEEEEST--------TEEEEEECTTS-CEEEEEEECCSC--------SSGG-
T ss_pred EEEEEcCC----CCccccccEECCCCCEEEEecCC--------CCEEEEEeCCC-CEEEEEeccCCC--------Cccc-
Confidence 77876431 11123455556565666653321 14677788753 344553221100 0010
Q ss_pred ccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcC
Q 048754 529 RLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHT 603 (625)
Q Consensus 529 r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~ 603 (625)
...+.+....++.+++.... ...|.+||++ .+..|+.-.. .. -+++....++.+++.+..+
T Consensus 125 ~~~~~v~~~~~G~~lv~~~~------~~~v~~~d~~-G~~~w~~~~~--~~-----~~~~~~~~~g~~~v~~~~~ 185 (276)
T 3no2_A 125 AQFRQINKNKKGNYLVPLFA------TSEVREIAPN-GQLLNSVKLS--GT-----PFSSAFLDNGDCLVACGDA 185 (276)
T ss_dssp GSCSCCEECTTSCEEEEETT------TTEEEEECTT-SCEEEEEECS--SC-----CCEEEECTTSCEEEECBTT
T ss_pred ccccCceECCCCCEEEEecC------CCEEEEECCC-CCEEEEEECC--CC-----ccceeEcCCCCEEEEeCCC
Confidence 11112223446777766432 4579999996 6777865431 11 2345556566777766543
No 121
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.02 E-value=0.72 Score=44.25 Aligned_cols=180 Identities=18% Similarity=0.140 Sum_probs=84.5
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
.++..++.|+.+ ..+.+||+.+. ............... .+.+...++..++.|+.+ ..+.+||+.+
T Consensus 107 ~~~~~l~~~~~d-----~~i~~~d~~~~--~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~d------g~v~~~d~~~ 172 (337)
T 1gxr_A 107 PDGCTLIVGGEA-----STLSIWDLAAP--TPRIKAELTSSAPAC-YALAISPDSKVCFSCCSD------GNIAVWDLHN 172 (337)
T ss_dssp TTSSEEEEEESS-----SEEEEEECCCC----EEEEEEECSSSCE-EEEEECTTSSEEEEEETT------SCEEEEETTT
T ss_pred CCCCEEEEEcCC-----CcEEEEECCCC--CcceeeecccCCCce-EEEEECCCCCEEEEEeCC------CcEEEEeCCC
Confidence 344566666643 36889999887 432221110011111 122223344566666532 3588899765
Q ss_pred CCCceEE-cCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC
Q 048754 447 DKPMWRE-IPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 447 ~~~~W~~-~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~ 525 (625)
.. ... +.. . ...-.++....++..++.|+.+ ..+.+||+.+. + .+....
T Consensus 173 ~~--~~~~~~~--~--~~~i~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~--~--~~~~~~----------- 222 (337)
T 1gxr_A 173 QT--LVRQFQG--H--TDGASCIDISNDGTKLWTGGLD---------NTVRSWDLREG--R--QLQQHD----------- 222 (337)
T ss_dssp TE--EEEEECC--C--SSCEEEEEECTTSSEEEEEETT---------SEEEEEETTTT--E--EEEEEE-----------
T ss_pred Cc--eeeeeec--c--cCceEEEEECCCCCEEEEEecC---------CcEEEEECCCC--c--eEeeec-----------
Confidence 43 222 221 1 1111233333344566666642 57889998732 2 222220
Q ss_pred CCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 526 PPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 526 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
....-.++....+++++++|+. ...+..||+. +..-..... ....-.++....++.+++.|+.++
T Consensus 223 -~~~~v~~~~~s~~~~~l~~~~~------~~~i~~~~~~--~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 223 -FTSQIFSLGYCPTGEWLAVGME------SSNVEVLHVN--KPDKYQLHL-----HESCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp -CSSCEEEEEECTTSSEEEEEET------TSCEEEEETT--SSCEEEECC-----CSSCEEEEEECTTSSEEEEEETTS
T ss_pred -CCCceEEEEECCCCCEEEEEcC------CCcEEEEECC--CCCeEEEcC-----CccceeEEEECCCCCEEEEecCCC
Confidence 1111123333346677777764 3468899984 333222211 111122334444567777777543
No 122
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.01 E-value=1 Score=42.04 Aligned_cols=204 Identities=12% Similarity=-0.028 Sum_probs=106.1
Q ss_pred eeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEE
Q 048754 361 HTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTY 440 (625)
Q Consensus 361 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 440 (625)
+.+....++.+|+..|..+ .+.+.++|+.|++.. ..++. +...++. ++...++.+|+..- ..+.++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~-~~i~l---~~~~fge-Gi~~~g~~lyv~t~------~~~~v~ 89 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVE-NIHKM---DDSYFGE-GLTLLNEKLYQVVW------LKNIGF 89 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEE-EEEEC---CTTCCEE-EEEEETTEEEEEET------TCSEEE
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEE-EEEec---CCCcceE-EEEEeCCEEEEEEe------cCCEEE
Confidence 4454444379999877422 246999999998322 23321 2222333 34445779999743 235789
Q ss_pred EEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCC
Q 048754 441 LLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGS 520 (625)
Q Consensus 441 ~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~ 520 (625)
+||+++.+. -..++.+ .| .+.+.+ .+++++|+.-| .+.++++|+.+. ..-..+...
T Consensus 90 viD~~t~~v-~~~i~~g-~~---~g~glt-~Dg~~l~vs~g----------s~~l~viD~~t~-~v~~~I~Vg------- 145 (266)
T 2iwa_A 90 IYDRRTLSN-IKNFTHQ-MK---DGWGLA-TDGKILYGSDG----------TSILYEIDPHTF-KLIKKHNVK------- 145 (266)
T ss_dssp EEETTTTEE-EEEEECC-SS---SCCEEE-ECSSSEEEECS----------SSEEEEECTTTC-CEEEEEECE-------
T ss_pred EEECCCCcE-EEEEECC-CC---CeEEEE-ECCCEEEEECC----------CCeEEEEECCCC-cEEEEEEEC-------
Confidence 999765432 1233322 12 223333 34558998754 278999999831 122233221
Q ss_pred CCCCCCCCcc-ceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCe-EEEcCCCC--------CCCCCCcceEEE
Q 048754 521 QSAVVPPPRL-DHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSW-RILNVPGQ--------PPKFAWGHSTCV 590 (625)
Q Consensus 521 ~~~~~p~~r~-~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W-~~v~~~~~--------~p~~r~~~~~~~ 590 (625)
..+.+.. -..+... ++++|+--. ..++|.+.|+ .+.+= ..+...+. .+..-.-.+.+.
T Consensus 146 ---~~~~p~~~~nele~~-dg~lyvn~~------~~~~V~vID~--~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~ 213 (266)
T 2iwa_A 146 ---YNGHRVIRLNELEYI-NGEVWANIW------QTDCIARISA--KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAW 213 (266)
T ss_dssp ---ETTEECCCEEEEEEE-TTEEEEEET------TSSEEEEEET--TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEE
T ss_pred ---CCCcccccceeEEEE-CCEEEEecC------CCCeEEEEEC--CCCcEEEEEECCCcccccccccccccCceEEEEE
Confidence 1111111 1122333 778887633 2569999999 44432 12221111 111111244445
Q ss_pred EC-CcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 591 VG-GTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 591 ~~-~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
.. ++++||-|+.. +.++++++.+.
T Consensus 214 ~~~~~~lfVTgk~~------~~v~~i~l~~~ 238 (266)
T 2iwa_A 214 DQENKRIFVTGKLW------PKLFEIKLHLV 238 (266)
T ss_dssp ETTTTEEEEEETTC------SEEEEEEEEEC
T ss_pred cCCCCEEEEECCCC------CeEEEEEEecc
Confidence 54 46899988744 45566666543
No 123
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=95.94 E-value=0.0024 Score=51.77 Aligned_cols=43 Identities=14% Similarity=0.073 Sum_probs=36.8
Q ss_pred cccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHH
Q 048754 195 YFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIG 237 (625)
Q Consensus 195 ~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~ 237 (625)
.++.+..++|+|+++++++||+ +|++|..+.+++||++...+.
T Consensus 17 ~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~ 60 (121)
T 3f1p_B 17 RHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLR 60 (121)
T ss_dssp EECTTSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHH
T ss_pred EECCCceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHH
Confidence 3367777789999999999999 889999999999999977653
No 124
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.94 E-value=0.73 Score=44.33 Aligned_cols=175 Identities=6% Similarity=-0.004 Sum_probs=81.3
Q ss_pred eeeeecccCeeEEeeecCCCCCCCcccceEE--ECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccc
Q 048754 283 RELTTLEAVCWRKFTVRGAVEPSRCNFSACA--AGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWG 360 (625)
Q Consensus 283 ~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~ 360 (625)
-.++++.+++.......+..+ ..++. .++.+|+.+... +.++++|+.+....-..+.... .+.
T Consensus 22 v~~~d~~~~~~~~~~~~~~~~-----~~~~~s~dg~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~--~~~-- 86 (331)
T 3u4y_A 22 ISFFSTDTLEILNQITLGYDF-----VDTAITSDCSNVVVTSDFC------QTLVQIETQLEPPKVVAIQEGQ--SSM-- 86 (331)
T ss_dssp EEEEETTTCCEEEEEECCCCE-----EEEEECSSSCEEEEEESTT------CEEEEEECSSSSCEEEEEEECS--SCC--
T ss_pred EEEEeCcccceeeeEEccCCc-----ceEEEcCCCCEEEEEeCCC------CeEEEEECCCCceeEEecccCC--CCc--
Confidence 345676666664443222111 12222 244677776532 2489999987422122222111 111
Q ss_pred eeEEE-EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEE-cCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceec
Q 048754 361 HTLSS-LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIE-VSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLS 437 (625)
Q Consensus 361 ~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~-~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~ 437 (625)
++++. -+++++| .+...+ -...++++|+.++ +... ++... ..+..+.. +++.+|+.+... +
T Consensus 87 ~~~~~s~dg~~l~-~~~~~~--~~~~i~v~d~~~~--~~~~~~~~~~-----~~~~~~~spdg~~l~~~~~~~------~ 150 (331)
T 3u4y_A 87 ADVDITPDDQFAV-TVTGLN--HPFNMQSYSFLKN--KFISTIPIPY-----DAVGIAISPNGNGLILIDRSS------A 150 (331)
T ss_dssp CCEEECTTSSEEE-ECCCSS--SSCEEEEEETTTT--EEEEEEECCT-----TEEEEEECTTSSCEEEEEETT------T
T ss_pred cceEECCCCCEEE-EecCCC--CcccEEEEECCCC--CeEEEEECCC-----CccceEECCCCCEEEEEecCC------C
Confidence 21222 2455676 433221 1127999999887 4433 22211 11333333 344577765421 2
Q ss_pred e-EEEEecCCCCCce----EEcCCCCCCCCCCcceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 438 D-TYLLDLTTDKPMW----REIPTSWSPPSRLGHSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 438 ~-~~~~d~~~~~~~W----~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
. +.+|+++...... ..+.. ......++...++ .+|+.+.. ...+.+||+.+
T Consensus 151 ~~i~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~v~~~~---------~~~v~v~d~~~ 207 (331)
T 3u4y_A 151 NTVRRFKIDADGVLFDTGQEFISG-----GTRPFNITFTPDGNFAFVANLI---------GNSIGILETQN 207 (331)
T ss_dssp TEEEEEEECTTCCEEEEEEEEECS-----SSSEEEEEECTTSSEEEEEETT---------TTEEEEEECSS
T ss_pred ceEEEEEECCCCcEeecCCccccC-----CCCccceEECCCCCEEEEEeCC---------CCeEEEEECCC
Confidence 4 6777765432111 11211 1112334444344 57776543 26788999874
No 125
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.85 E-value=1.4 Score=42.57 Aligned_cols=246 Identities=12% Similarity=0.102 Sum_probs=116.9
Q ss_pred CeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCE
Q 048754 291 VCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSW 370 (625)
Q Consensus 291 ~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~ 370 (625)
..|+.+......+ .....++....+.+|+.|-. .-+++ ......+|+.+.... +.+-..+.+....++.
T Consensus 66 ~tW~~~~~~~~~~-~~~~~~i~~~~~~~~~~g~~-------g~i~~--S~DgG~tW~~~~~~~-~~~~~~~~i~~~~~~~ 134 (327)
T 2xbg_A 66 QTWEPRTLVLDHS-DYRFNSVSFQGNEGWIVGEP-------PIMLH--TTDGGQSWSQIPLDP-KLPGSPRLIKALGNGS 134 (327)
T ss_dssp SSCEECCCCCSCC-CCEEEEEEEETTEEEEEEET-------TEEEE--ESSTTSSCEECCCCT-TCSSCEEEEEEEETTE
T ss_pred CCCeECCCCCCCC-CccEEEEEecCCeEEEEECC-------CeEEE--ECCCCCCceECcccc-CCCCCeEEEEEECCCC
Confidence 4798875322111 12223334456788887532 11333 222236899875321 1111123444445678
Q ss_pred EEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCc
Q 048754 371 LVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPM 450 (625)
Q Consensus 371 iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~ 450 (625)
+|+.|..+ .+++-+-.-. +|+.+... .+...+..+...++.+|++|-. + .++.-+ +.....
T Consensus 135 ~~~~~~~g------~v~~S~DgG~--tW~~~~~~---~~~~~~~~~~~~~~~~~~~g~~---G----~~~~S~-d~gG~t 195 (327)
T 2xbg_A 135 AEMITNVG------AIYRTKDSGK--NWQALVQE---AIGVMRNLNRSPSGEYVAVSSR---G----SFYSTW-EPGQTA 195 (327)
T ss_dssp EEEEETTC------CEEEESSTTS--SEEEEECS---CCCCEEEEEECTTSCEEEEETT---S----SEEEEE-CTTCSS
T ss_pred EEEEeCCc------cEEEEcCCCC--CCEEeecC---CCcceEEEEEcCCCcEEEEECC---C----cEEEEe-CCCCCc
Confidence 88877521 2443322223 79988653 2223344444445567766521 1 344433 121345
Q ss_pred eEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCcc
Q 048754 451 WREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRL 530 (625)
Q Consensus 451 W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~ 530 (625)
|+.+.. +.+...+.++...++.+|+.+.. ..+++.+.+ ...+|+.+... ..+....
T Consensus 196 W~~~~~---~~~~~~~~~~~~~~g~~~~~~~~----------G~~~~s~~D-~G~tW~~~~~~----------~~~~~~~ 251 (327)
T 2xbg_A 196 WEPHNR---TTSRRLHNMGFTPDGRLWMIVNG----------GKIAFSDPD-NSENWGELLSP----------LRRNSVG 251 (327)
T ss_dssp CEEEEC---CSSSCEEEEEECTTSCEEEEETT----------TEEEEEETT-EEEEECCCBCT----------TSSCCSC
T ss_pred eeECCC---CCCCccceeEECCCCCEEEEeCC----------ceEEEecCC-CCCeeEeccCC----------cccCCcc
Confidence 998853 33444455555455678877542 223333222 14588876421 0011111
Q ss_pred ceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcC
Q 048754 531 DHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGG 601 (625)
Q Consensus 531 ~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG 601 (625)
.+......++.+|++|+. ..+++-.- .-.+|+.+......|. ..+.+...+++.+++.|.
T Consensus 252 ~~~v~~~~~~~~~~~g~~-------g~i~~S~D--gG~tW~~~~~~~~~~~--~~~~v~~~~~~~~~~~G~ 311 (327)
T 2xbg_A 252 FLDLAYRTPNEVWLAGGA-------GALLCSQD--GGQTWQQDVDVKKVPS--NFYKILFFSPDQGFILGQ 311 (327)
T ss_dssp EEEEEESSSSCEEEEEST-------TCEEEESS--TTSSCEECGGGTTSSS--CCCEEEEEETTEEEEECS
T ss_pred eEEEEecCCCEEEEEeCC-------CeEEEeCC--CCcccEEcCccCCCCC--CeEEEEEECCCceEEEcC
Confidence 223333336678888762 23433221 4679998863211221 224444445556666653
No 126
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=95.84 E-value=0.00055 Score=56.11 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=42.2
Q ss_pred eeecccccCCcchhhhhhhhccccccccc---cccCCCCCCcccccccccccCc-hhH--HHHhhhcccC
Q 048754 166 FSEAKIDLNHVSYPVFKENCNQQYDQSAQ---YFSGGHSPLSQHQDICGILQLS-DEV--LAHNILSRLT 229 (625)
Q Consensus 166 Dit~~~~~e~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~n~~~~~~~g~~-~e~--~~~~~~~~~~ 229 (625)
++|++|++++ +++..+++++..++.+.. ++|.+..++++|+++++++||+ +++ +|..+..+++
T Consensus 1 ~~t~r~~~e~-~L~~~~~~~~~l~e~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~ 69 (126)
T 3bwl_A 1 SNAERKRREK-RLEETSSRLEALFENSPDMIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF 69 (126)
T ss_dssp CHHHHHHHHH-HHHHHHHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC
T ss_pred CchhHHHHHH-HHHHHHHHHHHHHhhCCcEEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC
Confidence 4677777655 233444555555544433 3476777889999999999999 677 3566666665
No 127
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.80 E-value=1.5 Score=44.36 Aligned_cols=234 Identities=15% Similarity=0.072 Sum_probs=114.1
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
.+..++.|+.+. .+.++|+.+.... ..+. .. ...-.+..+++ ..++.|+.+ ..+.+||+.+.
T Consensus 208 ~~~~l~s~s~dg------~i~~wd~~~~~~~-~~~~-~~----~~~v~~~~~~~-~~l~~~~~d-----g~i~iwd~~~~ 269 (445)
T 2ovr_B 208 HEKRVVSGSRDA------TLRVWDIETGQCL-HVLM-GH----VAAVRCVQYDG-RRVVSGAYD-----FMVKVWDPETE 269 (445)
T ss_dssp ETTEEEEEETTS------EEEEEESSSCCEE-EEEE-CC----SSCEEEEEECS-SCEEEEETT-----SCEEEEEGGGT
T ss_pred cCCEEEEEeCCC------EEEEEECCCCcEE-EEEc-CC----cccEEEEEECC-CEEEEEcCC-----CEEEEEECCCC
Confidence 344455665432 3888888763211 1221 11 11122333444 456666643 35888998876
Q ss_pred CCEEE-EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECC
Q 048754 395 QPTWI-EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGR 473 (625)
Q Consensus 395 ~~~W~-~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 473 (625)
.-. .+... .. .-.++.+++ ..++.|+.+ ..+.+||+.+...... +.. ... ........+
T Consensus 270 --~~~~~~~~~---~~--~v~~~~~~~-~~l~~~~~d------~~i~i~d~~~~~~~~~-~~~--~~~---~v~~~~~~~ 329 (445)
T 2ovr_B 270 --TCLHTLQGH---TN--RVYSLQFDG-IHVVSGSLD------TSIRVWDVETGNCIHT-LTG--HQS---LTSGMELKD 329 (445)
T ss_dssp --EEEEEECCC---SS--CEEEEEECS-SEEEEEETT------SCEEEEETTTCCEEEE-ECC--CCS---CEEEEEEET
T ss_pred --cEeEEecCC---CC--ceEEEEECC-CEEEEEeCC------CeEEEEECCCCCEEEE-EcC--Ccc---cEEEEEEeC
Confidence 332 22211 11 122334445 455556532 3688899866542222 221 111 122333444
Q ss_pred cEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCC
Q 048754 474 TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLH 553 (625)
Q Consensus 474 ~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 553 (625)
.+++.|+.+ ..+.+||+.+. ..+.... ..........++.. ++.+++.|+.
T Consensus 330 -~~l~~~~~d---------g~i~vwd~~~~----~~~~~~~---------~~~~~~~~v~~~~~-~~~~l~s~~~----- 380 (445)
T 2ovr_B 330 -NILVSGNAD---------STVKIWDIKTG----QCLQTLQ---------GPNKHQSAVTCLQF-NKNFVITSSD----- 380 (445)
T ss_dssp -TEEEEEETT---------SCEEEEETTTC----CEEEEEC---------STTSCSSCEEEEEE-CSSEEEEEET-----
T ss_pred -CEEEEEeCC---------CeEEEEECCCC----cEEEEEc---------cCCCCCCCEEEEEE-CCCEEEEEeC-----
Confidence 455666543 57888998732 2232220 00112222344555 5667777775
Q ss_pred CCCcEEEEeCCCCCCCeEEEc-CCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 554 SPSQLFLLDPSEEKPSWRILN-VPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 554 ~~~~v~~~d~~~~~~~W~~v~-~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
...|.+||+ .+.+....- .....+..-.-.++...+++.+++.|+.++.. ...+++++++.+
T Consensus 381 -dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~--~~~l~v~df~~~ 443 (445)
T 2ovr_B 381 -DGTVKLWDL--KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE--ETKLLVLDFDVD 443 (445)
T ss_dssp -TSEEEEEET--TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSS--CCEEEEEECCCC
T ss_pred -CCeEEEEEC--CCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCC--ccEEEEEECCCC
Confidence 347889998 444433221 10001111111233334567788889888764 356788887654
No 128
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.78 E-value=1.2 Score=49.00 Aligned_cols=216 Identities=9% Similarity=0.027 Sum_probs=107.2
Q ss_pred eEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCC-CCC-CCc
Q 048754 334 TFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGA-PPL-PRS 411 (625)
Q Consensus 334 ~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~-~p~-~r~ 411 (625)
+++|+..+ .+++.+.....+. ..-.+++...++.|++... +-+++||+.+. +|..+.... .+. ...
T Consensus 429 l~~~~~~~--~~~~~~~~~~~~~-~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~--~~~~~~~~~~~~~~~~~ 496 (781)
T 3v9f_A 429 ISYYNTRL--KKFQIIELEKNEL-LDVRVFYEDKNKKIWIGTH-------AGVFVIDLASK--KVIHHYDTSNSQLLENF 496 (781)
T ss_dssp EEEECSSS--CEEEECCSTTTCC-CCEEEEEECTTSEEEEEET-------TEEEEEESSSS--SCCEEECTTTSSCSCSC
T ss_pred EEEEcCCC--CcEEEeccCCCCC-CeEEEEEECCCCCEEEEEC-------CceEEEeCCCC--eEEecccCcccccccce
Confidence 88898876 5777663221111 1222333333556776532 34899999887 555443211 011 111
Q ss_pred cceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCC-CCCCCCCcceEEEECCcEEEEEcCCcCCCCccc
Q 048754 412 WHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTS-WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRL 490 (625)
Q Consensus 412 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~ 490 (625)
-.+.+.-.++.++|.. . . .-+++||+.+.. ++.+... +.+.. .-.+.+...++.|++...
T Consensus 497 i~~i~~d~~g~lWigt-~-~-----~Gl~~~~~~~~~--~~~~~~~~~l~~~-~i~~i~~d~~g~lWi~T~--------- 557 (781)
T 3v9f_A 497 VRSIAQDSEGRFWIGT-F-G-----GGVGIYTPDMQL--VRKFNQYEGFCSN-TINQIYRSSKGQMWLATG--------- 557 (781)
T ss_dssp EEEEEECTTCCEEEEE-S-S-----SCEEEECTTCCE--EEEECTTTTCSCS-CEEEEEECTTSCEEEEET---------
T ss_pred eEEEEEcCCCCEEEEE-c-C-----CCEEEEeCCCCe--EEEccCCCCCCCC-eeEEEEECCCCCEEEEEC---------
Confidence 1222233445677632 1 1 247889976654 7766532 12211 112232333457777522
Q ss_pred ccCce-EEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCC
Q 048754 491 RSGES-YTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPS 569 (625)
Q Consensus 491 ~~~~~-~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~ 569 (625)
..+ ++||+. +.++...... ...|.... .+.+.-.++.|++.+ .+-+.+||+ .+.+
T Consensus 558 --~Glv~~~d~~--~~~~~~~~~~---------~gl~~~~i-~~i~~d~~g~lW~~t--------~~Gl~~~~~--~~~~ 613 (781)
T 3v9f_A 558 --EGLVCFPSAR--NFDYQVFQRK---------EGLPNTHI-RAISEDKNGNIWAST--------NTGISCYIT--SKKC 613 (781)
T ss_dssp --TEEEEESCTT--TCCCEEECGG---------GTCSCCCC-CEEEECSSSCEEEEC--------SSCEEEEET--TTTE
T ss_pred --CCceEEECCC--CCcEEEcccc---------CCCCCceE-EEEEECCCCCEEEEc--------CCceEEEEC--CCCc
Confidence 345 677777 4455555432 11222222 344444467788763 235889999 5777
Q ss_pred eEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 570 WRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 570 W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
+........++...+...++....+.-+.|||.++
T Consensus 614 ~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~G 648 (781)
T 3v9f_A 614 FYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSING 648 (781)
T ss_dssp EEEECGGGTCCSSCEEEEEEEECTTSCEEEEETTE
T ss_pred eEEecccCCccccccccCceEECCCCEEEEECCCc
Confidence 77765433344443333333333234556677543
No 129
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.76 E-value=1.5 Score=42.13 Aligned_cols=212 Identities=11% Similarity=0.029 Sum_probs=92.1
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.||+.+... ..+.+|++...+.++..+.....+. .. ..++.. +++.+|+.+..+ +.+.+||+..
T Consensus 49 g~~l~~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~ 115 (343)
T 1ri6_A 49 KRYLYVGVRPE------FRVLAYRIAPDDGALTFAAESALPG-SL-THISTDHQGQFVFVGSYNA-----GNVSVTRLED 115 (343)
T ss_dssp SSEEEEEETTT------TEEEEEEECTTTCCEEEEEEEECSS-CC-SEEEECTTSSEEEEEETTT-----TEEEEEEEET
T ss_pred CCEEEEeecCC------CeEEEEEecCCCCceeeccccccCC-CC-cEEEEcCCCCEEEEEecCC-----CeEEEEECCC
Confidence 44566655421 3477888763225666542111111 11 222322 345566665422 3578888742
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCC-CCCceEEcC--CCCCCCCCCcceEE
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTT-DKPMWREIP--TSWSPPSRLGHSLS 469 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~-~~~~W~~~~--~~~~p~~r~~~~~~ 469 (625)
+ .....+... +....-+..+.. +++.+|+.+... ..+.+||+.+ .. ...+. ....+....-..++
T Consensus 116 ~-~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 184 (343)
T 1ri6_A 116 G-LPVGVVDVV--EGLDGCHSANISPDNRTLWVPALKQ------DRICLFTVSDDGH--LVAQDPAEVTTVEGAGPRHMV 184 (343)
T ss_dssp T-EEEEEEEEE--CCCTTBCCCEECTTSSEEEEEEGGG------TEEEEEEECTTSC--EEEEEEEEEECSTTCCEEEEE
T ss_pred C-ccccccccc--cCCCCceEEEECCCCCEEEEecCCC------CEEEEEEecCCCc--eeeecccccccCCCCCcceEE
Confidence 2 012221111 001111223233 445677654221 3688889865 33 43221 00011111112233
Q ss_pred EECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCC---ccceEEEEe-cCC-EEE
Q 048754 470 VYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPP---RLDHVAVSM-PCG-RII 543 (625)
Q Consensus 470 ~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~---r~~~~~~~~-~~~-~l~ 543 (625)
...++ .+|+.+.. ...+.+||+...+..+..+.... ..+.. ......+.+ .++ .||
T Consensus 185 ~~pdg~~l~~~~~~---------~~~i~~~~~~~~~g~~~~~~~~~---------~~~~~~~~~~~~~~i~~s~dg~~l~ 246 (343)
T 1ri6_A 185 FHPNEQYAYCVNEL---------NSSVDVWELKDPHGNIECVQTLD---------MMPENFSDTRWAADIHITPDGRHLY 246 (343)
T ss_dssp ECTTSSEEEEEETT---------TTEEEEEESSCTTSCCEEEEEEE---------CSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred ECCCCCEEEEEeCC---------CCEEEEEEecCCCCcEEEEeecc---------ccCccccccCCccceEECCCCCEEE
Confidence 33333 57766533 25788888853233444333221 01111 111222333 344 566
Q ss_pred EEecCCCCCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 544 IFGGSIAGLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 544 v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
+.+.. .+.+.+||+...+.++..+.
T Consensus 247 v~~~~------~~~i~v~d~~~~~~~~~~~~ 271 (343)
T 1ri6_A 247 ACDRT------ASLITVFSVSEDGSVLSKEG 271 (343)
T ss_dssp EEETT------TTEEEEEEECTTSCCEEEEE
T ss_pred EEecC------CCEEEEEEEcCCCCceEEee
Confidence 65432 35788888842245566553
No 130
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.46 Score=52.28 Aligned_cols=232 Identities=8% Similarity=0.005 Sum_probs=110.0
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cC--CEEEEEccCCCCCccccEEEEECC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NG--SWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
+.+++.||.+. .+.+||+.. .++..+..-. .....-.+..+ .+ +..++.|+.++ .+.++|+.
T Consensus 21 g~~latg~~dg------~I~vwd~~~--~~~~~~~~l~--~h~~~V~~l~~s~~~~~~~l~s~s~Dg-----~I~vwd~~ 85 (753)
T 3jro_A 21 GKRLATCSSDK------TIKIFEVEG--ETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDG-----KVLIWKEE 85 (753)
T ss_dssp SCCEEEEETTT------EEEEEEEET--TEEEEEEEEC--CCSSCEEEEEECCTTSCSEEEEEETTS-----CEEEEEEE
T ss_pred CCeEEEEECCC------cEEEEecCC--CCCccceecc--CCcCceEEEEecCCCCCCEEEEEeCCC-----eEEEEECC
Confidence 44555665432 378888775 3455442111 11111222223 22 45667777543 58889988
Q ss_pred CCCCEEEEcCCCCCCCCCccceEEEE-cC--CEEEEEcCcCCCCceeceEEEEecCCCCCce-EEcCCCCCCCCCCcceE
Q 048754 393 AKQPTWIEVSGGAPPLPRSWHSSCII-EG--SKLVVSGGCTDAGVLLSDTYLLDLTTDKPMW-REIPTSWSPPSRLGHSL 468 (625)
Q Consensus 393 t~~~~W~~~~~~~~p~~r~~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W-~~~~~~~~p~~r~~~~~ 468 (625)
++ .|..+........ .-.++.+ .+ +.+++.|+.+ ..+.+||+.+....- ..+.. .+.+ -.++
T Consensus 86 ~~--~~~~~~~~~~h~~--~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~~~~~~~~~~--~~~~--v~~l 151 (753)
T 3jro_A 86 NG--RWSQIAVHAVHSA--SVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDA--HAIG--VNSA 151 (753)
T ss_dssp TT--EEEEEEEECCCSS--CEEEEEECCGGGCSEEEEEETT------SEEEEEECCSSSCCCCEEEEC--CSSC--EEEE
T ss_pred CC--cccccccccCCCC--CeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecCCCcceeEeec--CCCc--eEEE
Confidence 87 7765543211111 1222333 22 4567777632 367888875542111 11111 1111 1112
Q ss_pred EEEC-------------CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEE
Q 048754 469 SVYG-------------RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAV 535 (625)
Q Consensus 469 ~~~~-------------~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~ 535 (625)
.... ++.+++.|+.+ ..+.+||+.+....+..+... ........++
T Consensus 152 ~~~p~~~~~~~~~~~~~d~~~l~sgs~d---------g~I~iwd~~~~~~~~~~~~~~------------~~h~~~V~~l 210 (753)
T 3jro_A 152 SWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSDAQTYVLESTL------------EGHSDWVRDV 210 (753)
T ss_dssp EECCCC---------CGGGCCEEEEETT---------SCEEEEEEETTTTEEEEEEEE------------CCCSSCEEEE
T ss_pred EecCcccccccccccCCCCCEEEEEECC---------CeEEEEeccCCcccceeeeee------------cCCCCcEEEE
Confidence 1211 24566666653 567788876544455555544 1111122333
Q ss_pred E-ecC---CEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 536 S-MPC---GRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 536 ~-~~~---~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
. ..+ +++++.||.+ ..+.+||+......+...... .......-.++...+++.+++.||.++
T Consensus 211 ~~sp~~~~~~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~s~s~Dg 276 (753)
T 3jro_A 211 AWSPTVLLRSYLASVSQD------RTCIIWTQDNEQGPWKKTLLK-EEKFPDVLWRASWSLSGNVLALSGGDN 276 (753)
T ss_dssp EECCCCSSSEEEEEEESS------SCEEEEEESSSSSCCBCCBSS-SSCCSSCCCCEEECTTTCCEEEECSSS
T ss_pred EeccCCCCCCEEEEEecC------CEEEEecCCCCCCcceeEEec-cCCCCCceEEEEEcCCCCEEEEEcCCC
Confidence 3 334 6888888863 467788874222222222111 111111223444555677888887654
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.75 E-value=0.44 Score=46.04 Aligned_cols=204 Identities=10% Similarity=-0.020 Sum_probs=88.5
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECC--
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLD-- 392 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~-- 392 (625)
+.+|+.++.+ +.+++|++... .++..+....... .-..++.. +++++|+.+..+ ..+.+|++.
T Consensus 5 ~~l~~~~~~~------~~v~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~-----~~v~~~~~~~~ 70 (343)
T 1ri6_A 5 QTVYIASPES------QQIHVWNLNHE-GALTLTQVVDVPG--QVQPMVVSPDKRYLYVGVRPE-----FRVLAYRIAPD 70 (343)
T ss_dssp EEEEEEEGGG------TEEEEEEECTT-SCEEEEEEEECSS--CCCCEEECTTSSEEEEEETTT-----TEEEEEEECTT
T ss_pred EEEEEeCCCC------CeEEEEEECCC-CcEEEeeeEecCC--CCceEEECCCCCEEEEeecCC-----CeEEEEEecCC
Confidence 4566665432 23788887531 3444432111111 11122222 355566655421 357777776
Q ss_pred CCCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE
Q 048754 393 AKQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY 471 (625)
Q Consensus 393 t~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 471 (625)
++ ++..+.....+. .. ...+.. +++.+|+.+. .. ..+.+||+.... ....+.. .+....-++++..
T Consensus 71 ~~--~~~~~~~~~~~~-~~-~~~~~s~dg~~l~~~~~-~~-----~~i~~~d~~~~~-~~~~~~~--~~~~~~~~~~~~s 137 (343)
T 1ri6_A 71 DG--ALTFAAESALPG-SL-THISTDHQGQFVFVGSY-NA-----GNVSVTRLEDGL-PVGVVDV--VEGLDGCHSANIS 137 (343)
T ss_dssp TC--CEEEEEEEECSS-CC-SEEEECTTSSEEEEEET-TT-----TEEEEEEEETTE-EEEEEEE--ECCCTTBCCCEEC
T ss_pred CC--ceeeccccccCC-CC-cEEEEcCCCCEEEEEec-CC-----CeEEEEECCCCc-ccccccc--ccCCCCceEEEEC
Confidence 55 555443211111 11 222222 4445666543 11 357778863111 1222211 0111112333344
Q ss_pred CCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEee--eccccCcCCCCCCCCCCccceEEEEecCC-EEEEEec
Q 048754 472 GRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLE--CNAFTGVGSQSAVVPPPRLDHVAVSMPCG-RIIIFGG 547 (625)
Q Consensus 472 ~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~--~~~~~~~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG 547 (625)
.++ .+|+.+.. ...+.+||+.+ ..+...+. ... .+.......+....++ .+|+.+.
T Consensus 138 ~dg~~l~~~~~~---------~~~v~~~d~~~-~~~~~~~~~~~~~----------~~~~~~~~~~~~~pdg~~l~~~~~ 197 (343)
T 1ri6_A 138 PDNRTLWVPALK---------QDRICLFTVSD-DGHLVAQDPAEVT----------TVEGAGPRHMVFHPNEQYAYCVNE 197 (343)
T ss_dssp TTSSEEEEEEGG---------GTEEEEEEECT-TSCEEEEEEEEEE----------CSTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCCEEEEecCC---------CCEEEEEEecC-CCceeeecccccc----------cCCCCCcceEEECCCCCEEEEEeC
Confidence 333 56665422 26788999874 13454433 210 0111111122333344 4666653
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCeEE
Q 048754 548 SIAGLHSPSQLFLLDPSEEKPSWRI 572 (625)
Q Consensus 548 ~~~~~~~~~~v~~~d~~~~~~~W~~ 572 (625)
. .+.+.+|++...+..+..
T Consensus 198 ~------~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 198 L------NSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp T------TTEEEEEESSCTTSCCEE
T ss_pred C------CCEEEEEEecCCCCcEEE
Confidence 3 457888888422344543
No 132
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.73 E-value=2.4 Score=45.71 Aligned_cols=127 Identities=18% Similarity=0.179 Sum_probs=73.5
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCC---CCc--cceEEEEcCCEEEEEcCcCCCCceeceEE
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPL---PRS--WHSSCIIEGSKLVVSGGCTDAGVLLSDTY 440 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~---~r~--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 440 (625)
+.++.||+... .+.++.+|..|++..|+.-....... ... ......+.++++|+... -..++
T Consensus 64 v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~ 130 (668)
T 1kv9_A 64 FHDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DGRLI 130 (668)
T ss_dssp EETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TSEEE
T ss_pred EECCEEEEECC------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------CCEEE
Confidence 34778998865 24699999999988999654321000 000 01122334667877432 13689
Q ss_pred EEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEe
Q 048754 441 LLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQL 510 (625)
Q Consensus 441 ~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~ 510 (625)
.+|.++.+..|+.-............+.++.++ .+|+..+....+ ....++.||..+....|+.-
T Consensus 131 alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~----~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 131 ALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYG----VRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTC----CBCEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcC----CCCEEEEEECCCCcEEEEec
Confidence 999999999998754211111122223444544 776643221111 13678999998877789864
No 133
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.72 E-value=2.2 Score=46.17 Aligned_cols=127 Identities=15% Similarity=0.131 Sum_probs=73.5
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCC---CC--ccceEEEEcCCEEEEEcCcCCCCceeceEE
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPL---PR--SWHSSCIIEGSKLVVSGGCTDAGVLLSDTY 440 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~---~r--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 440 (625)
+.++.||+.+. .+.++.+|..|++..|+.-....... .. .......+.++++|+... -..++
T Consensus 68 v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------dg~l~ 134 (689)
T 1yiq_A 68 VVDGVMYTTGP------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------DGRLE 134 (689)
T ss_dssp EETTEEEEECG------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEE
T ss_pred EECCEEEEEcC------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------CCEEE
Confidence 34778998765 24699999999988999644221000 00 001122344667877432 13689
Q ss_pred EEecCCCCCceEEcCC-CCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEe
Q 048754 441 LLDLTTDKPMWREIPT-SWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQL 510 (625)
Q Consensus 441 ~~d~~~~~~~W~~~~~-~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~ 510 (625)
.+|.++.+..|+.-.. ..........+.++.++ .+|+-.+....+. ...++.||..+....|+.-
T Consensus 135 AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~----~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 135 AIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGV----RGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCC----BCEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCC----CCEEEEEECCCCcEEEEec
Confidence 9999999889987542 11111122223445554 7766332211111 3678999999877789864
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.48 E-value=1.9 Score=41.35 Aligned_cols=147 Identities=10% Similarity=0.016 Sum_probs=73.6
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.+|+.++.+. .+.++|+.+ .+.......+ . ....++.. +++++|+.+... +.++++|+.+
T Consensus 9 ~~~~~v~~~~~~------~v~~~d~~~--~~~~~~~~~~--~--~~~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~ 71 (331)
T 3u4y_A 9 SNFGIVVEQHLR------RISFFSTDT--LEILNQITLG--Y--DFVDTAITSDCSNVVVTSDFC-----QTLVQIETQL 71 (331)
T ss_dssp CCEEEEEEGGGT------EEEEEETTT--CCEEEEEECC--C--CEEEEEECSSSCEEEEEESTT-----CEEEEEECSS
T ss_pred CCEEEEEecCCC------eEEEEeCcc--cceeeeEEcc--C--CcceEEEcCCCCEEEEEeCCC-----CeEEEEECCC
Confidence 467788776432 489999887 4554332111 1 11122322 455677776532 3799999988
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEE-cCCCCCCCCCCcceEEEE
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWRE-IPTSWSPPSRLGHSLSVY 471 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~-~~~~~~p~~r~~~~~~~~ 471 (625)
++..-..+.....| .++.+.. +++.+| .+... + ....++++|+.+.. ... ++. ....++++..
T Consensus 72 ~~~~~~~~~~~~~~----~~~~~~s~dg~~l~-~~~~~-~--~~~~i~v~d~~~~~--~~~~~~~-----~~~~~~~~~s 136 (331)
T 3u4y_A 72 EPPKVVAIQEGQSS----MADVDITPDDQFAV-TVTGL-N--HPFNMQSYSFLKNK--FISTIPI-----PYDAVGIAIS 136 (331)
T ss_dssp SSCEEEEEEECSSC----CCCEEECTTSSEEE-ECCCS-S--SSCEEEEEETTTTE--EEEEEEC-----CTTEEEEEEC
T ss_pred CceeEEecccCCCC----ccceEECCCCCEEE-EecCC-C--CcccEEEEECCCCC--eEEEEEC-----CCCccceEEC
Confidence 84313333322112 1212222 455566 33211 1 11278999986654 322 221 1112455554
Q ss_pred CCc-EEEEEcCCcCCCCcccccCc-eEEEEcCC
Q 048754 472 GRT-KVLMFGGLAKSGHLRLRSGE-SYTIDLGD 502 (625)
Q Consensus 472 ~~~-~l~v~GG~~~~~~~~~~~~~-~~~~d~~~ 502 (625)
.++ .+|+.+.. ... +++|++..
T Consensus 137 pdg~~l~~~~~~---------~~~~i~~~~~~~ 160 (331)
T 3u4y_A 137 PNGNGLILIDRS---------SANTVRRFKIDA 160 (331)
T ss_dssp TTSSCEEEEEET---------TTTEEEEEEECT
T ss_pred CCCCEEEEEecC---------CCceEEEEEECC
Confidence 444 47776443 145 77787764
No 135
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=95.48 E-value=0.0054 Score=49.23 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=37.0
Q ss_pred cCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhH
Q 048754 197 SGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSV 239 (625)
Q Consensus 197 ~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~ 239 (625)
+.+..++|+|+++++++||+ +|++|..+..++||++...+...
T Consensus 16 d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~ 59 (117)
T 3f1p_A 16 SMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKS 59 (117)
T ss_dssp CTTCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHH
T ss_pred CCCceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHH
Confidence 66777779999999999999 88999999999999998766433
No 136
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.37 E-value=2.1 Score=45.25 Aligned_cols=133 Identities=11% Similarity=0.157 Sum_probs=74.6
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEec-cCCCCceEEcccCCC---CCCc---cceeEEEE-cCCE----EEEEcc
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNL-DAANPEWRRVSVKSS---PPGR---WGHTLSSL-NGSW----LVVFGG 376 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~-~~~~~~W~~~~~~~~---p~~r---~~~~~~~~-~~~~----iyv~GG 376 (625)
.+.++.++.||+.+.. .+.++++|. .+-+..|+.-..... +.++ ...+.++. .+++ ||+...
T Consensus 56 ~tP~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~ 129 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL 129 (599)
T ss_dssp SCCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT
T ss_pred eccEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC
Confidence 4566789999998763 224999999 776678986321110 0011 11122320 3445 776543
Q ss_pred CCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcC
Q 048754 377 CGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIP 455 (625)
Q Consensus 377 ~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 455 (625)
...++.+|..|++..|+.-.....+......+-++. ++.+|+-.+..+ ......++.||..+.+..|+.-.
T Consensus 130 ------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e-~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 ------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAE-LGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp ------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGG-GTCCCEEEEEETTTCCEEEEEES
T ss_pred ------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccc-cCCCCeEEEEECCCCcEEEEEcC
Confidence 136899999999888985432110101111222334 557776432111 01235789999999888898654
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=95.35 E-value=1.7 Score=40.44 Aligned_cols=232 Identities=13% Similarity=0.015 Sum_probs=107.1
Q ss_pred CCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCC-CCCEEEEcCCCCCCCC
Q 048754 331 MDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDA-KQPTWIEVSGGAPPLP 409 (625)
Q Consensus 331 ~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t-~~~~W~~~~~~~~p~~ 409 (625)
-..++++|+.+ .+...+... ...-.+.+...+++.+++++. ..++++|+.+ . ....+... +..
T Consensus 21 ~~~i~~~d~~~--~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~------~~i~~~d~~~~~--~~~~~~~~--~~~ 84 (297)
T 2ojh_A 21 RSSIEIFNIRT--RKMRVVWQT----PELFEAPNWSPDGKYLLLNSE------GLLYRLSLAGDP--SPEKVDTG--FAT 84 (297)
T ss_dssp CEEEEEEETTT--TEEEEEEEE----SSCCEEEEECTTSSEEEEEET------TEEEEEESSSCC--SCEECCCT--TCC
T ss_pred ceeEEEEeCCC--CceeeeccC----CcceEeeEECCCCCEEEEEcC------CeEEEEeCCCCC--CceEeccc--ccc
Confidence 34588999877 455544211 111122332333445555541 3699999988 6 45555432 111
Q ss_pred CccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc-EEEEEcCCcCCCCc
Q 048754 410 RSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT-KVLMFGGLAKSGHL 488 (625)
Q Consensus 410 r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~ 488 (625)
..-.......+++.+++++.... ....+|.+++.+.. ...+... . . ...+....++ .|++.++.+.
T Consensus 85 ~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~--~~~~~~~--~-~--~~~~~~spdg~~l~~~~~~~~---- 151 (297)
T 2ojh_A 85 ICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGT--PRLMTKN--L-P--SYWHGWSPDGKSFTYCGIRDQ---- 151 (297)
T ss_dssp CBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCC--CEECCSS--S-S--EEEEEECTTSSEEEEEEEETT----
T ss_pred ccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCc--eEEeecC--C-C--ccceEECCCCCEEEEEECCCC----
Confidence 11122223334445555542222 23578888875544 4554431 1 1 2233333333 4554444321
Q ss_pred ccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCC
Q 048754 489 RLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKP 568 (625)
Q Consensus 489 ~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~ 568 (625)
...+|.+++. +.....+... .... .......+++.+++++... ....+|.+++ ...
T Consensus 152 ---~~~l~~~~~~--~~~~~~~~~~-------------~~~~-~~~~~s~dg~~l~~~~~~~---~~~~i~~~~~--~~~ 207 (297)
T 2ojh_A 152 ---VFDIYSMDID--SGVETRLTHG-------------EGRN-DGPDYSPDGRWIYFNSSRT---GQMQIWRVRV--DGS 207 (297)
T ss_dssp ---EEEEEEEETT--TCCEEECCCS-------------SSCE-EEEEECTTSSEEEEEECTT---SSCEEEEEET--TSS
T ss_pred ---ceEEEEEECC--CCcceEcccC-------------CCcc-ccceECCCCCEEEEEecCC---CCccEEEECC--CCC
Confidence 1367777776 3344333221 1111 2222333555444444211 2457888887 344
Q ss_pred CeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCC-----ccCceEEEEccCC
Q 048754 569 SWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEW-----VLNELHELCLASK 620 (625)
Q Consensus 569 ~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~-----~~~d~~~~~~~~~ 620 (625)
....+... ..........++++.+++++.++... ....++++++.+.
T Consensus 208 ~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 208 SVERITDS-----AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp CEEECCCC-----SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred CcEEEecC-----CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 55444311 11112233334566666666543221 1255778877553
No 138
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.33 E-value=3.4 Score=45.57 Aligned_cols=214 Identities=10% Similarity=0.074 Sum_probs=106.4
Q ss_pred eEEEeccCCCCceEEcccCCCCCC-ccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCC---
Q 048754 334 TFVLNLDAANPEWRRVSVKSSPPG-RWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLP--- 409 (625)
Q Consensus 334 ~~~~~~~~~~~~W~~~~~~~~p~~-r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~--- 409 (625)
+++||..+ .++..+.......+ ..-.+++...++.|++... +-+++||+.++ +|..+.....+..
T Consensus 429 l~~~d~~~--~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~--~~~~~~~~~~~~~~~~ 497 (795)
T 4a2l_A 429 LSILHRNS--GQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------SALVRFNPEQR--SFTTIEKEKDGTPVVS 497 (795)
T ss_dssp EEEEETTT--CCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------SCEEEEETTTT--EEEECCBCTTCCBCCC
T ss_pred eeEEeCCC--CcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------CceeEEeCCCC--eEEEccccccccccCC
Confidence 88999876 46666532111111 1112233223455666542 24899999988 8887753211111
Q ss_pred CccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCC----CCCCCCCCcceEEEECCcEEEEEcCCcCC
Q 048754 410 RSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPT----SWSPPSRLGHSLSVYGRTKVLMFGGLAKS 485 (625)
Q Consensus 410 r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~----~~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 485 (625)
..-.+.+...++.+++... .-+++||+.+.. + .+.. ...+ ...-.+.+...++.|++...
T Consensus 498 ~~i~~i~~d~~g~lWigt~--------~Gl~~~~~~~~~--~-~~~~~~~~~~l~-~~~i~~i~~d~~g~lWigT~---- 561 (795)
T 4a2l_A 498 KQITTLFRDSHKRLWIGGE--------EGLSVFKQEGLD--I-QKASILPVSNVT-KLFTNCIYEASNGIIWVGTR---- 561 (795)
T ss_dssp CCEEEEEECTTCCEEEEES--------SCEEEEEEETTE--E-EECCCSCSCGGG-GSCEEEEEECTTSCEEEEES----
T ss_pred ceEEEEEECCCCCEEEEeC--------CceEEEeCCCCe--E-EEecCCCCCCCC-CCeeEEEEECCCCCEEEEeC----
Confidence 1112222224456777322 247888876654 5 3321 0111 11112222224457777421
Q ss_pred CCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCC
Q 048754 486 GHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSE 565 (625)
Q Consensus 486 ~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~ 565 (625)
..+++||+. +.++....... + .|... ..+.+.-.+++|++.+. .-+.+||+
T Consensus 562 -------~Gl~~~d~~--~~~~~~~~~~~--------g-l~~~~-i~~i~~d~~g~lWi~t~--------~Gl~~~~~-- 612 (795)
T 4a2l_A 562 -------EGFYCFNEK--DKQIKRYNTTN--------G-LPNNV-VYGILEDSFGRLWLSTN--------RGISCFNP-- 612 (795)
T ss_dssp -------SCEEEEETT--TTEEEEECGGG--------T-CSCSC-EEEEEECTTSCEEEEET--------TEEEEEET--
T ss_pred -------CCceeECCC--CCcEEEeCCCC--------C-Cchhh-eEEEEECCCCCEEEEcC--------CceEEEcC--
Confidence 357889987 44666554320 1 22221 22333333577888642 36889999
Q ss_pred CCCCeEEEcCCCCCCCCCCc-ceEEEECCcEEEEEcCcCC
Q 048754 566 EKPSWRILNVPGQPPKFAWG-HSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 566 ~~~~W~~v~~~~~~p~~r~~-~~~~~~~~~~i~i~GG~~~ 604 (625)
.+.++........++...+. .+++...++ -+.|||.++
T Consensus 613 ~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G-~l~~g~~~G 651 (795)
T 4a2l_A 613 ETEKFRNFTESDGLQSNQFNTASYCRTSVG-QMYFGGING 651 (795)
T ss_dssp TTTEEEEECGGGTCSCSCEEEEEEEECTTS-CEEEEETTE
T ss_pred CCCcEEEcCCcCCCccccCccCceeECCCC-eEEEecCCc
Confidence 57777766543334444433 233444444 455666543
No 139
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=95.32 E-value=1.5 Score=41.93 Aligned_cols=220 Identities=15% Similarity=0.069 Sum_probs=102.7
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQ 395 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~ 395 (625)
+.+++.|+.+ ..+.+||+.+. +............. -.+++...++..++.|+.+ ..+.+||+.+.
T Consensus 109 ~~~l~~~~~d------~~i~~~d~~~~--~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~- 173 (337)
T 1gxr_A 109 GCTLIVGGEA------STLSIWDLAAP--TPRIKAELTSSAPA-CYALAISPDSKVCFSCCSD-----GNIAVWDLHNQ- 173 (337)
T ss_dssp SSEEEEEESS------SEEEEEECCCC----EEEEEEECSSSC-EEEEEECTTSSEEEEEETT-----SCEEEEETTTT-
T ss_pred CCEEEEEcCC------CcEEEEECCCC--CcceeeecccCCCc-eEEEEECCCCCEEEEEeCC-----CcEEEEeCCCC-
Confidence 4455555542 23888888763 32222101111111 1222223344566666643 35889999877
Q ss_pred CEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcE
Q 048754 396 PTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTK 475 (625)
Q Consensus 396 ~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~ 475 (625)
+....-.. ..... .+.+...++..++.|+.+ ..+.+||+.+...... +. .+.+ -.++....++.
T Consensus 174 -~~~~~~~~--~~~~i-~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~-~~---~~~~--v~~~~~s~~~~ 237 (337)
T 1gxr_A 174 -TLVRQFQG--HTDGA-SCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQ-HD---FTSQ--IFSLGYCPTGE 237 (337)
T ss_dssp -EEEEEECC--CSSCE-EEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEE-EE---CSSC--EEEEEECTTSS
T ss_pred -ceeeeeec--ccCce-EEEEECCCCCEEEEEecC------CcEEEEECCCCceEee-ec---CCCc--eEEEEECCCCC
Confidence 44322211 11111 222233344566666532 3688899765431111 11 1111 12333334446
Q ss_pred EEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCC
Q 048754 476 VLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSP 555 (625)
Q Consensus 476 l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~ 555 (625)
++++|+.+ ..+.+||+.+. .-..+.. ....-.++....++++++.|+. .
T Consensus 238 ~l~~~~~~---------~~i~~~~~~~~--~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~------d 286 (337)
T 1gxr_A 238 WLAVGMES---------SNVEVLHVNKP--DKYQLHL--------------HESCVLSLKFAYCGKWFVSTGK------D 286 (337)
T ss_dssp EEEEEETT---------SCEEEEETTSS--CEEEECC--------------CSSCEEEEEECTTSSEEEEEET------T
T ss_pred EEEEEcCC---------CcEEEEECCCC--CeEEEcC--------------CccceeEEEECCCCCEEEEecC------C
Confidence 66666542 57888998742 2111111 1111123333335677777775 3
Q ss_pred CcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 556 SQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 556 ~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
..+.+||+. +..-..... ....-.++....++..++.|+.++
T Consensus 287 g~i~~~~~~--~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg 328 (337)
T 1gxr_A 287 NLLNAWRTP--YGASIFQSK-----ESSSVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp SEEEEEETT--TCCEEEEEE-----CSSCEEEEEECTTSCEEEEEETTS
T ss_pred CcEEEEECC--CCeEEEEec-----CCCcEEEEEECCCCCEEEEecCCC
Confidence 478899984 333322211 111123344445667888887654
No 140
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=95.17 E-value=0.0053 Score=49.51 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=35.1
Q ss_pred hhhhhhccccccccc---cccCCCCCCcccccccccccCc-hhHHHHhhhcccC
Q 048754 180 VFKENCNQQYDQSAQ---YFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLT 229 (625)
Q Consensus 180 ~~~~~~~~~~~~~~~---~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~ 229 (625)
..+++++..++.+.. ++|.+..++++|+++++++||+ +|++|..+..+.+
T Consensus 8 ~se~~~~~l~e~~~d~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~ 61 (117)
T 2r78_A 8 FQSNAYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSR 61 (117)
T ss_dssp HHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTTTTTT
T ss_pred HhHHHHHHHHhcCCceEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHHHhCC
Confidence 445556666654433 3476777779999999999999 8888776654433
No 141
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.16 E-value=3.1 Score=43.98 Aligned_cols=129 Identities=17% Similarity=0.207 Sum_probs=72.5
Q ss_pred EcCCEEEEEccCCCCCccccEEEEEC-CCCCCEEEEcCCCCC---CCCCcc--ceEEEE--cCCE----EEEEcCcCCCC
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDL-DAKQPTWIEVSGGAP---PLPRSW--HSSCII--EGSK----LVVSGGCTDAG 433 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~-~t~~~~W~~~~~~~~---p~~r~~--~~~~~~--~~~~----iyv~GG~~~~~ 433 (625)
+.++.||+.+.+ .+.++.+|. .+++..|+.-..... +..+.. .....+ .+++ +|+...
T Consensus 60 v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~----- 129 (599)
T 1w6s_A 60 VVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL----- 129 (599)
T ss_dssp EETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-----
T ss_pred EECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-----
Confidence 347789998753 236999999 899889996543210 001110 112233 3555 777432
Q ss_pred ceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEee
Q 048754 434 VLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLE 511 (625)
Q Consensus 434 ~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~ 511 (625)
-..++.+|.++.+..|+.-.....+......+.++.++ .+|+-.+....+. ...++.||..+....|+.-.
T Consensus 130 --dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g-~V~vg~~g~e~g~----~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 --DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGV----RGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp --TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTC----CCEEEEEETTTCCEEEEEES
T ss_pred --CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECC-EEEEEecccccCC----CCeEEEEECCCCcEEEEEcC
Confidence 13689999999998998643210010111223344554 7765432211111 36788999998777898654
No 142
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.16 E-value=4.4 Score=43.75 Aligned_cols=128 Identities=13% Similarity=0.069 Sum_probs=75.6
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCC-----c---cceeEEEEcCCEEEEEccCCCC
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPG-----R---WGHTLSSLNGSWLVVFGGCGRQ 380 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~-----r---~~~~~~~~~~~~iyv~GG~~~~ 380 (625)
.+.++.++.||+.... +.++.+|..+-+..|+.-. ..+.. + ...+.+ +.+++||+...
T Consensus 64 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~~~~-~~~g~v~v~~~---- 129 (689)
T 1yiq_A 64 ATPIVVDGVMYTTGPF-------SVVYALDARDGRLIWKYDP--QSDRHRAGEACCDAVNRGVA-VWKGKVYVGVL---- 129 (689)
T ss_dssp CCCEEETTEEEEECGG-------GCEEEEETTTCCEEEEECC--CCCGGGGGGCTTCSCCCCCE-EETTEEEEECT----
T ss_pred ecCEEECCEEEEEcCC-------CeEEEEECCCCceeEEEcC--CCCccccccccccCCCCccE-EECCEEEEEcc----
Confidence 4456789999998753 2389999987767898531 11110 0 011223 34667877643
Q ss_pred CccccEEEEECCCCCCEEEEcCC-CCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEc
Q 048754 381 GLLNDVFVLDLDAKQPTWIEVSG-GAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREI 454 (625)
Q Consensus 381 ~~~~~~~~~d~~t~~~~W~~~~~-~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 454 (625)
-..++.+|..|++..|+.-.. ..........+.++. ++.+|+-.+... ......++.||..+.+..|+.-
T Consensus 130 --dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 130 --DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NGKVVIGNGGAE-FGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp --TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEE
T ss_pred --CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CCEEEEEeCCCc-cCCCCEEEEEECCCCcEEEEec
Confidence 236899999999888986542 111111112223344 557777332111 1133579999999998889864
No 143
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.11 E-value=2.9 Score=45.00 Aligned_cols=130 Identities=12% Similarity=0.088 Sum_probs=76.3
Q ss_pred ccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCC--------ccceeEEEEcCCEEEEEccCCC
Q 048754 308 NFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPG--------RWGHTLSSLNGSWLVVFGGCGR 379 (625)
Q Consensus 308 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~--------r~~~~~~~~~~~~iyv~GG~~~ 379 (625)
..+-++.++.||+.... +.++.+|..+-+..|+.-. ..+.. ....+.+ +.+++||+...
T Consensus 59 ~~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~~~--- 125 (668)
T 1kv9_A 59 EATPLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDP--EVAKVKARTSCCDAVNRGVA-LWGDKVYVGTL--- 125 (668)
T ss_dssp CCCCEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECC--CCCGGGGGGCTTCSCCCCCE-EEBTEEEEECT---
T ss_pred ccCCEEECCEEEEECCC-------CeEEEEECCCChhceEECC--CCCccccccccccCCccceE-EECCEEEEEcC---
Confidence 34556789999998753 2389999887667898531 11110 0011223 34667877643
Q ss_pred CCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcC
Q 048754 380 QGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIP 455 (625)
Q Consensus 380 ~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 455 (625)
...++.+|..|++..|+.-............+.++. ++.+|+..+... ......++.||+.+.+..|+.-.
T Consensus 126 ---dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 126 ---DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAE-YGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp ---TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEES
T ss_pred ---CCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCC-cCCCCEEEEEECCCCcEEEEecc
Confidence 136999999999889986542211111222223334 667777432111 11335799999999998898643
No 144
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=95.02 E-value=2.4 Score=41.21 Aligned_cols=110 Identities=13% Similarity=0.171 Sum_probs=49.9
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+. .+.+||+.+ .++.......... ..-.++....++..++.|+.+ ..+.+||+.+.
T Consensus 63 ~~~~l~~~~~dg------~i~vwd~~~--~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~ 128 (372)
T 1k8k_C 63 DSNRIVTCGTDR------NAYVWTLKG--RTWKPTLVILRIN-RAARCVRWAPNEKKFAVGSGS-----RVISICYFEQE 128 (372)
T ss_dssp TTTEEEEEETTS------CEEEEEEET--TEEEEEEECCCCS-SCEEEEEECTTSSEEEEEETT-----SSEEEEEEETT
T ss_pred CCCEEEEEcCCC------eEEEEECCC--CeeeeeEEeecCC-CceeEEEECCCCCEEEEEeCC-----CEEEEEEecCC
Confidence 455666666432 388889876 4554332111111 111222222344566666643 24777777665
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecC
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
...+..... ..+....-.+.+...++..++.|+.+ ..+.+||+.
T Consensus 129 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~ 172 (372)
T 1k8k_C 129 NDWWVCKHI-KKPIRSTVLSLDWHPNSVLLAAGSCD------FKCRIFSAY 172 (372)
T ss_dssp TTEEEEEEE-CTTCCSCEEEEEECTTSSEEEEEETT------SCEEEEECC
T ss_pred Ccceeeeee-ecccCCCeeEEEEcCCCCEEEEEcCC------CCEEEEEcc
Confidence 322221111 01111111222233344566666632 357788853
No 145
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=94.93 E-value=2 Score=41.84 Aligned_cols=206 Identities=12% Similarity=0.111 Sum_probs=97.4
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cC--CEEEEEccCCCCCccccEEEEECC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NG--SWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
+.+++.|+.+. .+.+||+.+ .+|..+....... ..-.+..+ .+ +.+++.|+.+ ..+.+||+.
T Consensus 69 ~~~l~s~~~dg------~v~iwd~~~--~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~ 133 (379)
T 3jrp_A 69 GTILASCSYDG------KVLIWKEEN--GRWSQIAVHAVHS--ASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFK 133 (379)
T ss_dssp CSEEEEEETTS------CEEEEEEET--TEEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEETT-----SEEEEEECC
T ss_pred CCEEEEeccCC------EEEEEEcCC--CceeEeeeecCCC--cceEEEEeCCCCCCCEEEEecCC-----CcEEEEecC
Confidence 45666666532 388899887 5665543221111 11222222 22 3466666643 357888887
Q ss_pred CCCC-EEEEcCCCCCCCCCccceEEEEc-------------CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCC
Q 048754 393 AKQP-TWIEVSGGAPPLPRSWHSSCIIE-------------GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSW 458 (625)
Q Consensus 393 t~~~-~W~~~~~~~~p~~r~~~~~~~~~-------------~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~ 458 (625)
+... .-..+... + ..-.+.+... ++.+++.|+.+ ..+.+||+.+....|..+..
T Consensus 134 ~~~~~~~~~~~~~--~--~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~-- 201 (379)
T 3jrp_A 134 ENGTTSPIIIDAH--A--IGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLEST-- 201 (379)
T ss_dssp TTSCCCEEEEECC--T--TCEEEEEECCCC----------CTTCEEEEEETT------SCEEEEEEETTTTEEEEEEE--
T ss_pred CCCceeeEEecCC--C--CceEEEEEcCccccccccccCCCCCCEEEEEeCC------CeEEEEEecCCCcceeeEEE--
Confidence 6511 11111111 0 0111111112 34566666643 25788887665544544321
Q ss_pred CCC-CCCcceEEEECC---cEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEE
Q 048754 459 SPP-SRLGHSLSVYGR---TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVA 534 (625)
Q Consensus 459 ~p~-~r~~~~~~~~~~---~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~ 534 (625)
... ...-.+++...+ +.+++.|+.+ ..+.+||+.+....+...... .......-.++
T Consensus 202 ~~~h~~~v~~~~~sp~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~----------~~~~~~~v~~~ 262 (379)
T 3jrp_A 202 LEGHSDWVRDVAWSPTVLLRSYLASVSQD---------RTCIIWTQDNEQGPWKKTLLK----------EEKFPDVLWRA 262 (379)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEETT---------SCEEEEEESSTTSCCEEEESS----------SSCCSSCEEEE
T ss_pred EecccCcEeEEEECCCCCCCCeEEEEeCC---------CEEEEEeCCCCCccceeeeec----------cccCCCcEEEE
Confidence 111 111123333344 5778887754 467788877432233222111 00111112233
Q ss_pred EEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 535 VSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 535 ~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
....++++++.|+.+ ..+.+|++. ....|..+.
T Consensus 263 ~~s~~g~~l~~~~~d------g~i~iw~~~-~~~~~~~~~ 295 (379)
T 3jrp_A 263 SWSLSGNVLALSGGD------NKVTLWKEN-LEGKWEPAG 295 (379)
T ss_dssp EECSSSCCEEEEESS------SSEEEEEEE-ETTEEEEEE
T ss_pred EEcCCCCEEEEecCC------CcEEEEeCC-CCCcccccc
Confidence 333466777777753 356666663 256777665
No 146
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=94.87 E-value=3.1 Score=40.44 Aligned_cols=154 Identities=12% Similarity=0.105 Sum_probs=71.6
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+ ..+.+||+.+ .+|..+..-....... .+++...++..++.|+.+ ..+.+||+.+.
T Consensus 19 ~~~~l~~~~~d------~~v~i~~~~~--~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~ 84 (372)
T 1k8k_C 19 DRTQIAICPNN------HEVHIYEKSG--NKWVQVHELKEHNGQV-TGVDWAPDSNRIVTCGTD-----RNAYVWTLKGR 84 (372)
T ss_dssp TSSEEEEECSS------SEEEEEEEET--TEEEEEEEEECCSSCE-EEEEEETTTTEEEEEETT-----SCEEEEEEETT
T ss_pred CCCEEEEEeCC------CEEEEEeCCC--CcEEeeeeecCCCCcc-cEEEEeCCCCEEEEEcCC-----CeEEEEECCCC
Confidence 44556666542 2388899877 4554432111111111 222223344566666643 25888898877
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
.+....... .....-.+.....++.+++.|+.+ ..+.+||+.+....+...... .+....-.++....++
T Consensus 85 --~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 85 --TWKPTLVIL-RINRAARCVRWAPNEKKFAVGSGS------RVISICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNS 154 (372)
T ss_dssp --EEEEEEECC-CCSSCEEEEEECTTSSEEEEEETT------SSEEEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTS
T ss_pred --eeeeeEEee-cCCCceeEEEECCCCCEEEEEeCC------CEEEEEEecCCCcceeeeeee-cccCCCeeEEEEcCCC
Confidence 655432111 111111222222344566666532 246677765544222211110 1111111233333444
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
.+++.|+.+ ..+.+||+.
T Consensus 155 ~~l~~~~~d---------g~i~~~d~~ 172 (372)
T 1k8k_C 155 VLLAAGSCD---------FKCRIFSAY 172 (372)
T ss_dssp SEEEEEETT---------SCEEEEECC
T ss_pred CEEEEEcCC---------CCEEEEEcc
Confidence 667776653 567788864
No 147
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=94.82 E-value=0.0048 Score=51.03 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=38.7
Q ss_pred cccccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhh
Q 048754 187 QQYDQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVAS 235 (625)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~ 235 (625)
........++|.++.++++|+++++++|++ ++++|.++..++++++...
T Consensus 14 ~~~~d~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~ 63 (129)
T 3mfx_A 14 QHLTEAMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQAR 63 (129)
T ss_dssp TTCSSEEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGG
T ss_pred hcCCceEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHH
Confidence 333444555688888889999999999999 8899999999998876443
No 148
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=94.79 E-value=2.5 Score=39.34 Aligned_cols=157 Identities=15% Similarity=0.068 Sum_probs=83.7
Q ss_pred ceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCccccc
Q 048754 413 HSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRS 492 (625)
Q Consensus 413 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~ 492 (625)
|......++.+|+..|... .+.+..+|+.+.+.. ..++ .+....+.+.+..++ +||+..-. .
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~-~~i~---l~~~~fgeGi~~~g~-~lyv~t~~---------~ 85 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVE-NIHK---MDDSYFGEGLTLLNE-KLYQVVWL---------K 85 (266)
T ss_dssp EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEE-EEEE---CCTTCCEEEEEEETT-EEEEEETT---------C
T ss_pred ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEE-EEEe---cCCCcceEEEEEeCC-EEEEEEec---------C
Confidence 3443333379999877322 257899998876521 2222 222334455656655 99998543 3
Q ss_pred CceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCC-eE
Q 048754 493 GESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPS-WR 571 (625)
Q Consensus 493 ~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~-W~ 571 (625)
+.+++||+.+ .+.+...+ .+.+ .+ ..+...++++|+.-| .+.++++|+ ++.+ -.
T Consensus 86 ~~v~viD~~t----~~v~~~i~----------~g~~-~g-~glt~Dg~~l~vs~g-------s~~l~viD~--~t~~v~~ 140 (266)
T 2iwa_A 86 NIGFIYDRRT----LSNIKNFT----------HQMK-DG-WGLATDGKILYGSDG-------TSILYEIDP--HTFKLIK 140 (266)
T ss_dssp SEEEEEETTT----TEEEEEEE----------CCSS-SC-CEEEECSSSEEEECS-------SSEEEEECT--TTCCEEE
T ss_pred CEEEEEECCC----CcEEEEEE----------CCCC-Ce-EEEEECCCEEEEECC-------CCeEEEEEC--CCCcEEE
Confidence 7899999873 33444431 0101 12 223343667887643 468999999 4544 33
Q ss_pred EEcCCCCCCCCC-CcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 572 ILNVPGQPPKFA-WGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 572 ~v~~~~~~p~~r-~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
.+.. +..+.+. .-..+... ++.+|+-- +..++|.++|+.+.
T Consensus 141 ~I~V-g~~~~p~~~~nele~~-dg~lyvn~------~~~~~V~vID~~tg 182 (266)
T 2iwa_A 141 KHNV-KYNGHRVIRLNELEYI-NGEVWANI------WQTDCIARISAKDG 182 (266)
T ss_dssp EEEC-EETTEECCCEEEEEEE-TTEEEEEE------TTSSEEEEEETTTC
T ss_pred EEEE-CCCCcccccceeEEEE-CCEEEEec------CCCCeEEEEECCCC
Confidence 3332 2111111 11123333 45777542 12467888887664
No 149
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=93.66 E-value=0.0058 Score=58.97 Aligned_cols=87 Identities=10% Similarity=0.104 Sum_probs=57.9
Q ss_pred EEEEEEEeeCCCCCEEEEEEEEE-eeecccccCCcch--hhhhhhhccc--------------------cccccccccCC
Q 048754 143 NRLRLAPIRDDDGTVTHIIGIQI-FSEAKIDLNHVSY--PVFKENCNQQ--------------------YDQSAQYFSGG 199 (625)
Q Consensus 143 ~~~~~~~~~d~~g~~~~~i~~~~-Dit~~~~~e~~~~--~~~~~~~~~~--------------------~~~~~~~~~~~ 199 (625)
+...+.|+++ +|++++++++.+ |+++++.....+. ......+... ......++|.+
T Consensus 111 v~~~~~Pi~~-~g~vigvl~~~~~di~~~~~~~~~e~~~~~~~~~L~~mi~~~~~~~~~~~~~~~~~~~~~dGIivvD~~ 189 (305)
T 2ykf_A 111 HSVEVSPVRF-GDQVVAVLTRHQPELAARRRSGHLETAYRLCATDLLRMLAEGTFPDAGDVAMSRSSPRAGDGFIRLDVD 189 (305)
Confidence 5788899987 689999999999 9998743322111 1111112221 12222344777
Q ss_pred CCCCccccccccccc---CchhHHHHhhhcccCc
Q 048754 200 HSPLSQHQDICGILQ---LSDEVLAHNILSRLTP 230 (625)
Q Consensus 200 ~~~~~~n~~~~~~~g---~~~e~~~~~~~~~~~~ 230 (625)
+.++++|++++++++ ++++++|.++..+++.
T Consensus 190 G~Ii~~N~aA~~ll~~lG~~~~~iGk~l~el~~~ 223 (305)
T 2ykf_A 190 GVVSYASPNALSAYHRMGLTTELEGVNLIDATRP 223 (305)
Confidence 778899999999974 5678888888777654
No 150
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=94.56 E-value=3.6 Score=39.77 Aligned_cols=143 Identities=14% Similarity=0.128 Sum_probs=64.8
Q ss_pred CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEE
Q 048754 420 GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTID 499 (625)
Q Consensus 420 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d 499 (625)
++..++.|+.+ ..+.+||+.+.......+.. .. ..-.++....++.+++.|+.+ ..+.+||
T Consensus 186 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~--~~--~~v~~~~~~~~~~~l~~~~~d---------~~i~v~d 246 (369)
T 3zwl_B 186 KGKYIIAGHKD------GKISKYDVSNNYEYVDSIDL--HE--KSISDMQFSPDLTYFITSSRD---------TNSFLVD 246 (369)
T ss_dssp GGCEEEEEETT------SEEEEEETTTTTEEEEEEEC--CS--SCEEEEEECTTSSEEEEEETT---------SEEEEEE
T ss_pred CCCEEEEEcCC------CEEEEEECCCCcEeEEEEec--CC--CceeEEEECCCCCEEEEecCC---------ceEEEEE
Confidence 33455656532 36888998653222222221 11 111233333344566666542 5788899
Q ss_pred cCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC--------CCcEEEEeCCCCCCCe-
Q 048754 500 LGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS--------PSQLFLLDPSEEKPSW- 570 (625)
Q Consensus 500 ~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~--------~~~v~~~d~~~~~~~W- 570 (625)
+.+. + .+... ........+....++..+++|+....... ...+..||+. +..=
T Consensus 247 ~~~~--~--~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~~~~~ 308 (369)
T 3zwl_B 247 VSTL--Q--VLKKY------------ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI--FEEEI 308 (369)
T ss_dssp TTTC--C--EEEEE------------ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT--TCCEE
T ss_pred CCCC--c--eeeee------------cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC--CCcch
Confidence 8732 2 22222 01111223333446666777665432111 1267788873 2221
Q ss_pred EEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 571 RILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 571 ~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
..+. + ....-.++....++.+++.||.++
T Consensus 309 ~~~~--~---~~~~v~~~~~s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 309 GRVQ--G---HFGPLNTVAISPQGTSYASGGEDG 337 (369)
T ss_dssp EEEE--C---CSSCEEEEEECTTSSEEEEEETTS
T ss_pred hhee--c---ccCcEEEEEECCCCCEEEEEcCCC
Confidence 1121 1 111112334445667888887654
No 151
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=94.55 E-value=3.4 Score=39.56 Aligned_cols=258 Identities=9% Similarity=0.002 Sum_probs=116.6
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.||+.+... ..+++||+.+ .+...+... + ...-++++...++++|+.+.... .....+++||+.+.
T Consensus 55 ~g~l~~~~~~~------~~i~~~d~~~--~~~~~~~~~--~-~~~~~~i~~~~dg~l~v~~~~~~-~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 55 QGQLFLLDVFE------GNIFKINPET--KEIKRPFVS--H-KANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAATENGD 122 (333)
T ss_dssp TSCEEEEETTT------CEEEEECTTT--CCEEEEEEC--S-SSSEEEEEECTTSCEEEEECTTS-SSCCEEEEECTTSC
T ss_pred CCCEEEEECCC------CEEEEEeCCC--CcEEEEeeC--C-CCCcceEEECCCCcEEEEeCCCC-CCCceEEEEeCCCC
Confidence 55688876532 2489999876 466554211 1 11122333334556877754221 11246899999887
Q ss_pred CCEEEE-cCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECC
Q 048754 395 QPTWIE-VSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGR 473 (625)
Q Consensus 395 ~~~W~~-~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 473 (625)
.... +... .+ ...-...+...++.+|+.............++.+|+++.. ...+... .. ...+.+...+
T Consensus 123 --~~~~~~~~~-~~-~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~-~~---~~~~i~~~~d 192 (333)
T 2dg1_A 123 --NLQDIIEDL-ST-AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQN-IS---VANGIALSTD 192 (333)
T ss_dssp --SCEEEECSS-SS-CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEE-ES---SEEEEEECTT
T ss_pred --EEEEEEccC-cc-CCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE--EEEeecC-CC---cccceEECCC
Confidence 3332 2211 11 1111223333455677754321111123468888875544 4443211 11 1123333334
Q ss_pred c-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCC
Q 048754 474 T-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGL 552 (625)
Q Consensus 474 ~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~ 552 (625)
+ .||+.... ...+++||+.++......+..... ...+........+.-.++++|+....
T Consensus 193 g~~l~v~~~~---------~~~i~~~d~~~~g~~~~~~~~~~~-------~~~~~~~~~~~i~~d~~G~l~v~~~~---- 252 (333)
T 2dg1_A 193 EKVLWVTETT---------ANRLHRIALEDDGVTIQPFGATIP-------YYFTGHEGPDSCCIDSDDNLYVAMYG---- 252 (333)
T ss_dssp SSEEEEEEGG---------GTEEEEEEECTTSSSEEEEEEEEE-------EECCSSSEEEEEEEBTTCCEEEEEET----
T ss_pred CCEEEEEeCC---------CCeEEEEEecCCCcCcccccceEE-------EecCCCCCCCceEECCCCCEEEEEcC----
Confidence 3 57776432 267889998632223322211000 00011111122333346778887532
Q ss_pred CCCCcEEEEeCCCCCCCeEEEcCCCCCCCCC--CcceEEEECC-cEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 553 HSPSQLFLLDPSEEKPSWRILNVPGQPPKFA--WGHSTCVVGG-TRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 553 ~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r--~~~~~~~~~~-~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
...|.+||+ +...-..+..... ..+. .-.+++...+ +.||+.+. .+....-..++++++...
T Consensus 253 --~~~v~~~d~--~g~~~~~~~~~~~-~~g~~~~~~~~~~~~dg~~L~v~~~-~g~~~~~~~l~~~~~~~~ 317 (333)
T 2dg1_A 253 --QGRVLVFNK--RGYPIGQILIPGR-DEGHMLRSTHPQFIPGTNQLIICSN-DIEMGGGSMLYTVNGFAK 317 (333)
T ss_dssp --TTEEEEECT--TSCEEEEEECTTG-GGTCSCBCCEEEECTTSCEEEEEEE-CGGGTCCEEEEEEECSSC
T ss_pred --CCEEEEECC--CCCEEEEEEcCCC-ccccccCcceEEECCCCCEEEEEeC-ccCCCCCceEEEEecccC
Confidence 347899998 3333333322110 0000 1123333344 35665433 322112356788887644
No 152
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=94.49 E-value=3.7 Score=39.66 Aligned_cols=231 Identities=10% Similarity=0.004 Sum_probs=101.7
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+. .+.+||+.+. +-...- .. ..... .+++...++..++.|+.+ ..+.+||+.+.
T Consensus 43 ~~~~l~~~~~dg------~i~vwd~~~~--~~~~~~-~~-h~~~v-~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~ 106 (369)
T 3zwl_B 43 EGDLLFSCSKDS------SASVWYSLNG--ERLGTL-DG-HTGTI-WSIDVDCFTKYCVTGSAD-----YSIKLWDVSNG 106 (369)
T ss_dssp TSCEEEEEESSS------CEEEEETTTC--CEEEEE-CC-CSSCE-EEEEECTTSSEEEEEETT-----TEEEEEETTTC
T ss_pred CCCEEEEEeCCC------EEEEEeCCCc--hhhhhh-hh-cCCcE-EEEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Confidence 445566665432 3888998763 222111 11 11111 122222334466666643 36889999877
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCC--ceEEcCCCCC-----CCCC-Ccc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKP--MWREIPTSWS-----PPSR-LGH 466 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~--~W~~~~~~~~-----p~~r-~~~ 466 (625)
+.... +. . +.+ -.+.....++..++.++... ......+.+||+.+... .+........ .... .-.
T Consensus 107 ~~~~~-~~-~--~~~--v~~~~~~~~~~~l~~~~~~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 107 QCVAT-WK-S--PVP--VKRVEFSPCGNYFLAILDNV-MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp CEEEE-EE-C--SSC--EEEEEECTTSSEEEEEECCB-TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred cEEEE-ee-c--CCC--eEEEEEccCCCEEEEecCCc-cCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 32222 21 1 111 12222333444555554321 11224677777644322 1222111000 0000 112
Q ss_pred eEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEe
Q 048754 467 SLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFG 546 (625)
Q Consensus 467 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G 546 (625)
+++...++.+++.|+.+ ..+.+||+.+. ...+.... .....-.++....++.+++.|
T Consensus 180 ~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~---~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~ 236 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKD---------GKISKYDVSNN---YEYVDSID-----------LHEKSISDMQFSPDLTYFITS 236 (369)
T ss_dssp EEEECGGGCEEEEEETT---------SEEEEEETTTT---TEEEEEEE-----------CCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEcCCCCEEEEEcCC---------CEEEEEECCCC---cEeEEEEe-----------cCCCceeEEEECCCCCEEEEe
Confidence 22233344566666543 57889998731 22232220 111111233333366677777
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 547 GSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 547 G~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
+. ...+.+||+ .+..-...-. ......++....++..+++|+.++
T Consensus 237 ~~------d~~i~v~d~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 237 SR------DTNSFLVDV--STLQVLKKYE-----TDCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp ET------TSEEEEEET--TTCCEEEEEE-----CSSCEEEEEECSSSSEEEEEECCC
T ss_pred cC------CceEEEEEC--CCCceeeeec-----CCCCceeEEecCCCceEEEeecCC
Confidence 64 347889998 3433322211 111123344445567777776554
No 153
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=94.46 E-value=3.2 Score=38.81 Aligned_cols=230 Identities=7% Similarity=-0.050 Sum_probs=111.1
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+|+..... ..+++++... ++..+..+. ....-++++...++++|+.... .+.++++|+ ++
T Consensus 67 ~g~l~v~~~~~------~~i~~~~~~g---~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~d~-~g 129 (299)
T 2z2n_A 67 DGEVWFTENAA------NKIGRITKKG---IIKEYTLPN--PDSAPYGITEGPNGDIWFTEMN-----GNRIGRITD-DG 129 (299)
T ss_dssp TSCEEEEETTT------TEEEEECTTS---CEEEEECSS--TTCCEEEEEECTTSCEEEEETT-----TTEEEEECT-TC
T ss_pred CCCEEEeCCCC------CeEEEECCCC---cEEEEeCCC--cCCCceeeEECCCCCEEEEecC-----CceEEEECC-CC
Confidence 56788765321 2388888753 455443111 1112233443345678887542 235889998 55
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
+...+... .....-+..+...++.+|+.... ...+++||+ +.. ...+... .....-.+++...++
T Consensus 130 --~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~--~~~~~~~--~~~~~~~~i~~~~~g 194 (299)
T 2z2n_A 130 --KIREYELP--NKGSYPSFITLGSDNALWFTENQ------NNAIGRITE-SGD--ITEFKIP--TPASGPVGITKGNDD 194 (299)
T ss_dssp --CEEEEECS--STTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCC--EEEEECS--STTCCEEEEEECTTS
T ss_pred --CEEEecCC--CCCCCCceEEEcCCCCEEEEeCC------CCEEEEEcC-CCc--EEEeeCC--CCCCcceeEEECCCC
Confidence 34433211 01112233333335578875421 146888997 444 5543211 011111234444445
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS 554 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~ 554 (625)
.+|+.... ...+++||+. . +...+... ...........-.+++||+....
T Consensus 195 ~l~v~~~~---------~~~i~~~~~~-g--~~~~~~~~------------~~~~~~~~i~~~~~g~l~v~~~~------ 244 (299)
T 2z2n_A 195 ALWFVEII---------GNKIGRITTS-G--EITEFKIP------------TPNARPHAITAGAGIDLWFTEWG------ 244 (299)
T ss_dssp SEEEEETT---------TTEEEEECTT-C--CEEEEECS------------STTCCEEEEEECSTTCEEEEETT------
T ss_pred CEEEEccC---------CceEEEECCC-C--cEEEEECC------------CCCCCceeEEECCCCCEEEeccC------
Confidence 78876432 2578889883 2 34333211 01111123333336678886422
Q ss_pred CCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 555 PSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 555 ~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
.+.+++||+ +........... ...-.+++. .++.||+... .+.+.+|++.+.
T Consensus 245 ~~~i~~~d~---~g~~~~~~~~~~---~~~~~~i~~-~~g~l~v~~~-------~~~l~~~~~~~~ 296 (299)
T 2z2n_A 245 ANKIGRLTS---NNIIEEYPIQIK---SAEPHGICF-DGETIWFAME-------CDKIGKLTLIKD 296 (299)
T ss_dssp TTEEEEEET---TTEEEEEECSSS---SCCEEEEEE-CSSCEEEEET-------TTEEEEEEEC--
T ss_pred CceEEEECC---CCceEEEeCCCC---CCccceEEe-cCCCEEEEec-------CCcEEEEEcCcc
Confidence 457999998 334444432111 111234444 6667777643 145777777654
No 154
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=94.45 E-value=5.9 Score=41.78 Aligned_cols=131 Identities=11% Similarity=0.099 Sum_probs=72.7
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCC-Ccc---ceeEEEEcCCEEEEEccCCCCCccc
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPP-GRW---GHTLSSLNGSWLVVFGGCGRQGLLN 384 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~-~r~---~~~~~~~~~~~iyv~GG~~~~~~~~ 384 (625)
.+.++.++.||+.+.. +.++++|..+-+..|+.-....... +.+ ..+.+ +.+++||+... ..
T Consensus 62 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a-~~~~~v~~~t~------dg 127 (582)
T 1flg_A 62 SQAIVSDGVIYVTASY-------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAA-IYGDKVFFGTL------DA 127 (582)
T ss_dssp CCCEEETTEEEEEETT-------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCE-EETTEEEEEET------TT
T ss_pred eccEEECCEEEEEcCC-------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccE-EECCEEEEEeC------CC
Confidence 4456789999998763 1289999987667898642111100 111 12223 34677877532 23
Q ss_pred cEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcC----C-EEEEEcCcCCCCceeceEEEEecCCCCCceEEc
Q 048754 385 DVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEG----S-KLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREI 454 (625)
Q Consensus 385 ~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~----~-~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 454 (625)
.++.+|..|++..|+.-............+-++.++ . .+|+ |...........++.||+.+.+..|+.-
T Consensus 128 ~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 128 SVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp EEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred EEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeecC
Confidence 699999999988998543210000011112223322 1 4544 4321111123578999999988889753
No 155
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=94.42 E-value=3.8 Score=39.49 Aligned_cols=243 Identities=13% Similarity=0.154 Sum_probs=116.6
Q ss_pred ccCeeEEeeecCCCCCCCcccceEEE--CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE
Q 048754 289 EAVCWRKFTVRGAVEPSRCNFSACAA--GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL 366 (625)
Q Consensus 289 ~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 366 (625)
....|+.+.. |... ....+.. .+.+|+.|-. .-+++- .....+|+.+.... +.+........+
T Consensus 23 ~g~~W~~~~~----~~~~-~~~~v~~~~~~~~~~~G~~-------g~i~~s--~DgG~tW~~~~~~~-~~~~~~~~~i~~ 87 (327)
T 2xbg_A 23 DYNPWEAIQL----PTTA-TILDMSFIDRHHGWLVGVN-------ATLMET--RDGGQTWEPRTLVL-DHSDYRFNSVSF 87 (327)
T ss_dssp SSCCEEEEEC----SCSS-CEEEEEESSSSCEEEEETT-------TEEEEE--SSTTSSCEECCCCC-SCCCCEEEEEEE
T ss_pred CCCCceEeec----CCCC-cEEEEEECCCCcEEEEcCC-------CeEEEe--CCCCCCCeECCCCC-CCCCccEEEEEe
Confidence 3467988863 2212 2223333 4577886532 113332 22235899874322 112222222333
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCC-CCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGA-PPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
.++.+|++|.. ..+++ ..+. -.+|+.+.... .|. .....+...++.+|+.|.. + .++.-+
T Consensus 88 ~~~~~~~~g~~------g~i~~-S~Dg-G~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~---g----~v~~S~-- 148 (327)
T 2xbg_A 88 QGNEGWIVGEP------PIMLH-TTDG-GQSWSQIPLDPKLPG--SPRLIKALGNGSAEMITNV---G----AIYRTK-- 148 (327)
T ss_dssp ETTEEEEEEET------TEEEE-ESST-TSSCEECCCCTTCSS--CEEEEEEEETTEEEEEETT---C----CEEEES--
T ss_pred cCCeEEEEECC------CeEEE-ECCC-CCCceECccccCCCC--CeEEEEEECCCCEEEEeCC---c----cEEEEc--
Confidence 45678887632 12443 2222 22899987431 121 1233444456688887641 1 234332
Q ss_pred CCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC
Q 048754 446 TDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 446 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~ 525 (625)
....+|+.+.. +.+..-++++...++.+|++|.. ..+++-+ +....+|+.+...
T Consensus 149 DgG~tW~~~~~---~~~~~~~~~~~~~~~~~~~~g~~----------G~~~~S~-d~gG~tW~~~~~~------------ 202 (327)
T 2xbg_A 149 DSGKNWQALVQ---EAIGVMRNLNRSPSGEYVAVSSR----------GSFYSTW-EPGQTAWEPHNRT------------ 202 (327)
T ss_dssp STTSSEEEEEC---SCCCCEEEEEECTTSCEEEEETT----------SSEEEEE-CTTCSSCEEEECC------------
T ss_pred CCCCCCEEeec---CCCcceEEEEEcCCCcEEEEECC----------CcEEEEe-CCCCCceeECCCC------------
Confidence 33455999864 22223344544455567766532 3344432 1114689988532
Q ss_pred CCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcC
Q 048754 526 PPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGG 601 (625)
Q Consensus 526 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG 601 (625)
.+...+.+....++.+|+++.. ..+++.+.. .-.+|+.+... ..+.....+++...+++.+|+.|+
T Consensus 203 -~~~~~~~~~~~~~g~~~~~~~~-------G~~~~s~~D-~G~tW~~~~~~-~~~~~~~~~~v~~~~~~~~~~~g~ 268 (327)
T 2xbg_A 203 -TSRRLHNMGFTPDGRLWMIVNG-------GKIAFSDPD-NSENWGELLSP-LRRNSVGFLDLAYRTPNEVWLAGG 268 (327)
T ss_dssp -SSSCEEEEEECTTSCEEEEETT-------TEEEEEETT-EEEEECCCBCT-TSSCCSCEEEEEESSSSCEEEEES
T ss_pred -CCCccceeEECCCCCEEEEeCC-------ceEEEecCC-CCCeeEeccCC-cccCCcceEEEEecCCCEEEEEeC
Confidence 2333344444457788877642 235554321 25689877531 112221123333334567888776
No 156
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=94.38 E-value=0.024 Score=53.51 Aligned_cols=49 Identities=20% Similarity=0.425 Sum_probs=45.1
Q ss_pred ccccCchhHHHHhhhcccCchhhh-hHHhHHHHHHHhhcchhHHhhhhhhc
Q 048754 211 GILQLSDEVLAHNILSRLTPRDVA-SIGSVCRRIRQLTKNEHVRKMVCQNA 260 (625)
Q Consensus 211 ~~~g~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (625)
.+..+|+|++ ..|+.++++.++. +++.+||+|+.++.+..+|+..|...
T Consensus 50 ~~~~LP~ell-~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 50 YLAELPEPLL-LRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp CTTSSCHHHH-HHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred ChhhCCHHHH-HHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 4568999999 9999999999999 99999999999999999999988765
No 157
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=94.36 E-value=6.9 Score=42.23 Aligned_cols=196 Identities=10% Similarity=0.005 Sum_probs=91.5
Q ss_pred cccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCC
Q 048754 383 LNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPP 461 (625)
Q Consensus 383 ~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~ 461 (625)
...++++|+.++ ....+... ......-..+.+ .+++.++++..+.. .....++++|+.+.. .+..+.......
T Consensus 234 ~~~l~~~d~~~~--~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~~v~~~d~~~g~-~~~~~~~~~~~~ 307 (706)
T 2z3z_A 234 HVTVGIYHLATG--KTVYLQTG--EPKEKFLTNLSWSPDENILYVAEVNRA-QNECKVNAYDAETGR-FVRTLFVETDKH 307 (706)
T ss_dssp EEEEEEEETTTT--EEEECCCC--SCTTCEEEEEEECTTSSEEEEEEECTT-SCEEEEEEEETTTCC-EEEEEEEEECSS
T ss_pred eeEEEEEECCCC--ceEeeccC--CCCceeEeeEEEECCCCEEEEEEeCCC-CCeeEEEEEECCCCc-eeeEEEEccCCC
Confidence 357999999888 65555432 111111122233 33343344332221 133578889986651 244432110110
Q ss_pred CC-CcceEEEEC--CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEe-
Q 048754 462 SR-LGHSLSVYG--RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSM- 537 (625)
Q Consensus 462 ~r-~~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~- 537 (625)
.. ...++.... ++++++.+..+ + ...+|.+|.. ......+... ... ....+.+
T Consensus 308 ~~~~~~~~~~sp~~dg~~l~~~~~~--g-----~~~l~~~~~~--~~~~~~l~~~------------~~~--v~~~~~~s 364 (706)
T 2z3z_A 308 YVEPLHPLTFLPGSNNQFIWQSRRD--G-----WNHLYLYDTT--GRLIRQVTKG------------EWE--VTNFAGFD 364 (706)
T ss_dssp CCCCCSCCEECTTCSSEEEEEECTT--S-----SCEEEEEETT--SCEEEECCCS------------SSC--EEEEEEEC
T ss_pred eECccCCceeecCCCCEEEEEEccC--C-----ccEEEEEECC--CCEEEecCCC------------CeE--EEeeeEEc
Confidence 00 012233443 55765555432 1 3678888865 3344444211 111 1121223
Q ss_pred cCC-EEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEE
Q 048754 538 PCG-RIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELC 616 (625)
Q Consensus 538 ~~~-~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~ 616 (625)
.++ .|++.+... ......+|.+|+ .+.....+.. ....++.....+++.+++...+... ..++++++
T Consensus 365 pdg~~l~~~~~~~--~~~~~~l~~~d~--~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~~~--p~~i~l~d 432 (706)
T 2z3z_A 365 PKGTRLYFESTEA--SPLERHFYCIDI--KGGKTKDLTP------ESGMHRTQLSPDGSAIIDIFQSPTV--PRKVTVTN 432 (706)
T ss_dssp TTSSEEEEEESSS--CTTCBEEEEEET--TCCCCEESCC------SSSEEEEEECTTSSEEEEEEECSSC--SCEEEEEE
T ss_pred CCCCEEEEEecCC--CCceEEEEEEEc--CCCCceeccC------CCceEEEEECCCCCEEEEEecCCCC--CcEEEEEE
Confidence 244 455554331 112358999998 4555555531 1112444555566666666544432 35677777
Q ss_pred ccC
Q 048754 617 LAS 619 (625)
Q Consensus 617 ~~~ 619 (625)
+.+
T Consensus 433 ~~~ 435 (706)
T 2z3z_A 433 IGK 435 (706)
T ss_dssp SSS
T ss_pred CCC
Confidence 654
No 158
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=94.28 E-value=0.022 Score=53.21 Aligned_cols=48 Identities=21% Similarity=0.294 Sum_probs=44.4
Q ss_pred cccCchhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHhhhhhhc
Q 048754 212 ILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNA 260 (625)
Q Consensus 212 ~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (625)
+..+|.|++ ..|+.+++|.|+..++.+||+|+.++.++.+||..+.++
T Consensus 5 l~~LP~ei~-l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 5 LTRLPIDVQ-LYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHHSCHHHH-HHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred hHhCCHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence 557899998 999999999999999999999999999999999988854
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=94.02 E-value=4.5 Score=38.79 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=36.7
Q ss_pred ECCEEEEEcccCCCCCCCCCeEEEeccCCCCceE-EcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEEC
Q 048754 314 AGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWR-RVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDL 391 (625)
Q Consensus 314 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~-~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~ 391 (625)
.++.+|+.++.. +.++++|+.+ .+.. .+... ....-+..+.. +++.+|+.+... +.+++||+
T Consensus 9 ~~~~~~v~~~~~------~~v~~~d~~~--~~~~~~~~~~---~~~~~~~~~~s~dg~~~~v~~~~~-----~~i~~~d~ 72 (349)
T 1jmx_B 9 AGHEYMIVTNYP------NNLHVVDVAS--DTVYKSCVMP---DKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDL 72 (349)
T ss_dssp TTCEEEEEEETT------TEEEEEETTT--TEEEEEEECS---SCCSSCEEEECTTSSEEEEEETTT-----TEEEEEET
T ss_pred CCCEEEEEeCCC------CeEEEEECCC--CcEEEEEecC---CCCCCceeEECCCCCEEEEEeCCC-----CcEEEEeC
Confidence 366788877652 3489999876 3333 22211 10011233333 345678776432 46999999
Q ss_pred CCC
Q 048754 392 DAK 394 (625)
Q Consensus 392 ~t~ 394 (625)
.++
T Consensus 73 ~t~ 75 (349)
T 1jmx_B 73 DTC 75 (349)
T ss_dssp TTT
T ss_pred CCC
Confidence 887
No 160
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=94.01 E-value=0.013 Score=54.93 Aligned_cols=53 Identities=9% Similarity=-0.002 Sum_probs=37.9
Q ss_pred hhccccccc---cccccC---CCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhH
Q 048754 184 NCNQQYDQS---AQYFSG---GHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASI 236 (625)
Q Consensus 184 ~~~~~~~~~---~~~~~~---~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~ 236 (625)
.++..++.. ..++|. +..++++|+++++++||+ ++++|..+..++++++...+
T Consensus 64 ~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~ 123 (258)
T 3p7n_A 64 WVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWL 123 (258)
T ss_dssp HHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHH
T ss_pred HHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhH
Confidence 344444433 334477 666789999999999999 88998888778777654433
No 161
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=93.86 E-value=7.3 Score=40.66 Aligned_cols=235 Identities=13% Similarity=0.110 Sum_probs=108.4
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceE-EcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEEC-
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWR-RVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDL- 391 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~-~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~- 391 (625)
++.+|+.+..+ +.+.++|..+. +-. .+. .+. .-|.++.. +++++|+.+. + +.+.+||+
T Consensus 148 ~~~~~vs~~~d------~~V~v~D~~t~--~~~~~i~-~g~----~~~~v~~spdg~~l~v~~~-d-----~~V~v~D~~ 208 (543)
T 1nir_A 148 PNLFSVTLRDA------GQIALVDGDSK--KIVKVID-TGY----AVHISRMSASGRYLLVIGR-D-----ARIDMIDLW 208 (543)
T ss_dssp GGEEEEEEGGG------TEEEEEETTTC--CEEEEEE-CST----TEEEEEECTTSCEEEEEET-T-----SEEEEEETT
T ss_pred CCEEEEEEcCC------CeEEEEECCCc--eEEEEEe-cCc----ccceEEECCCCCEEEEECC-C-----CeEEEEECc
Confidence 56788877643 23888888763 322 221 111 13444333 4556777654 1 57999999
Q ss_pred -CCCCCEEE-EcCCCCCCCCCccceEEEE----cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCC------
Q 048754 392 -DAKQPTWI-EVSGGAPPLPRSWHSSCII----EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWS------ 459 (625)
Q Consensus 392 -~t~~~~W~-~~~~~~~p~~r~~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~------ 459 (625)
.+. +-. .++.+ ..++ +.+..- +++.+|+.. . ..+.+.++|..+.+. -..++..+.
T Consensus 209 ~~t~--~~~~~i~~g--~~p~--~va~sp~~~~dg~~l~v~~-~-----~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 209 AKEP--TKVAEIKIG--IEAR--SVESSKFKGYEDRYTIAGA-Y-----WPPQFAIMDGETLEP-KQIVSTRGMTVDTQT 275 (543)
T ss_dssp SSSC--EEEEEEECC--SEEE--EEEECCSTTCTTTEEEEEE-E-----ESSEEEEEETTTCCE-EEEEECCEECSSSCC
T ss_pred CCCC--cEEEEEecC--CCcc--eEEeCCCcCCCCCEEEEEE-c-----cCCeEEEEecccccc-ceeecccCcccCccc
Confidence 665 332 33322 1121 222222 455666643 2 124677888765431 122222111
Q ss_pred --CCCCCcceEEEE-CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEE
Q 048754 460 --PPSRLGHSLSVY-GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVS 536 (625)
Q Consensus 460 --p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~ 536 (625)
|.++.. +++.. ++..+|+.... ...++++|..+. +-..+... +..+.-+....
T Consensus 276 ~~~~~~v~-~i~~s~~~~~~~vs~~~---------~g~i~vvd~~~~--~~l~~~~i------------~~~~~~~~~~~ 331 (543)
T 1nir_A 276 YHPEPRVA-AIIASHEHPEFIVNVKE---------TGKVLLVNYKDI--DNLTVTSI------------GAAPFLHDGGW 331 (543)
T ss_dssp EESCCCEE-EEEECSSSSEEEEEETT---------TTEEEEEECTTS--SSCEEEEE------------ECCSSCCCEEE
T ss_pred cccCCceE-EEEECCCCCEEEEEECC---------CCeEEEEEecCC--CcceeEEe------------ccCcCccCceE
Confidence 122221 22222 23356655432 378899998742 21122222 11222233333
Q ss_pred ecCCE-EEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECC-cEEEEEcCcCCCCCccCceEE
Q 048754 537 MPCGR-IIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGG-TRVLVLGGHTGEEWVLNELHE 614 (625)
Q Consensus 537 ~~~~~-l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~-~~i~i~GG~~~~~~~~~d~~~ 614 (625)
..+++ +|+.+.. .+.|.++|+ .+.+-......+..|.+-.+. .+...+ +.+|+.+.... +.|-+
T Consensus 332 spdg~~l~va~~~------~~~v~v~D~--~tg~l~~~i~~g~~ph~g~g~-~~~~p~~g~~~~s~~~~d-----~~V~v 397 (543)
T 1nir_A 332 DSSHRYFMTAANN------SNKVAVIDS--KDRRLSALVDVGKTPHPGRGA-NFVHPKYGPVWSTSHLGD-----GSISL 397 (543)
T ss_dssp CTTSCEEEEEEGG------GTEEEEEET--TTTEEEEEEECSSSBCCTTCE-EEEETTTEEEEEEEBSSS-----SEEEE
T ss_pred CCCCCEEEEEecC------CCeEEEEEC--CCCeEEEeeccCCCCCCCCCc-ccCCCCCccEEEeccCCC-----ceEEE
Confidence 34555 5554332 457888998 444433322223444432222 223333 56666553221 33555
Q ss_pred EEccC
Q 048754 615 LCLAS 619 (625)
Q Consensus 615 ~~~~~ 619 (625)
+++++
T Consensus 398 ~d~~~ 402 (543)
T 1nir_A 398 IGTDP 402 (543)
T ss_dssp EECCT
T ss_pred EEeCC
Confidence 55554
No 162
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=93.78 E-value=0.02 Score=46.05 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=32.3
Q ss_pred cccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhh
Q 048754 195 YFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 195 ~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~ 234 (625)
++|.+..++++|+++++++||+ +|++|.++..++++++..
T Consensus 8 ~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~ 48 (119)
T 2vv6_A 8 VIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRS 48 (119)
T ss_dssp EEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHH
T ss_pred EECCCCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHH
Confidence 3466777779999999999999 889988888777765543
No 163
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=93.78 E-value=0.014 Score=46.95 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=34.9
Q ss_pred ccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhH
Q 048754 196 FSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASI 236 (625)
Q Consensus 196 ~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~ 236 (625)
++.+..++|+|+++++++||+ +|++|..+..+++|++...+
T Consensus 19 ~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~ 60 (121)
T 2kdk_A 19 FAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNL 60 (121)
T ss_dssp ECTTSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHH
T ss_pred ECCCeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHH
Confidence 366777779999999999999 88898888899999887655
No 164
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=93.76 E-value=4.8 Score=40.30 Aligned_cols=201 Identities=13% Similarity=0.093 Sum_probs=95.8
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
+.++...+...+......++++|.... .-..+... . ... .+.....+++.+++++.... ...++++|+.+.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~--~~~~l~~~--~-~~v-~~~~~Spdg~~la~~s~~~~---~~~i~~~d~~tg 213 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGY--NQFVVHRS--P-QPL-MSPAWSPDGSKLAYVTFESG---RSALVIQTLANG 213 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSC--SCEEEEEE--S-SCE-EEEEECTTSSEEEEEECTTS---SCEEEEEETTTC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCC--CCEEEeCC--C-Ccc-eeeEEcCCCCEEEEEEecCC---CcEEEEEECCCC
Confidence 445544443322223367999998765 33333321 1 111 12222233445555553322 247899998766
Q ss_pred CCceEEcCCCCCCCCCCcceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCC
Q 048754 448 KPMWREIPTSWSPPSRLGHSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVP 526 (625)
Q Consensus 448 ~~~W~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p 526 (625)
. ...+.. .+ ....+.....++ .|++.+..+. ...++++|+.+ .+...+...
T Consensus 214 ~--~~~l~~--~~--~~~~~~~~spdg~~la~~~~~~g-------~~~i~~~d~~~--~~~~~l~~~------------- 265 (415)
T 2hqs_A 214 A--VRQVAS--FP--RHNGAPAFSPDGSKLAFALSKTG-------SLNLYVMDLAS--GQIRQVTDG------------- 265 (415)
T ss_dssp C--EEEEEC--CS--SCEEEEEECTTSSEEEEEECTTS-------SCEEEEEETTT--CCEEECCCC-------------
T ss_pred c--EEEeec--CC--CcccCEEEcCCCCEEEEEEecCC-------CceEEEEECCC--CCEEeCcCC-------------
Confidence 5 555442 11 112233333343 4554544321 25799999984 344443321
Q ss_pred CCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCC
Q 048754 527 PPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEE 606 (625)
Q Consensus 527 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~ 606 (625)
...........+++.+++++... ....+|.+|+ .+..-..+.. ......+....++++.+++++....
T Consensus 266 -~~~~~~~~~spdg~~l~~~s~~~---g~~~i~~~d~--~~~~~~~l~~-----~~~~~~~~~~spdG~~l~~~~~~~g- 333 (415)
T 2hqs_A 266 -RSNNTEPTWFPDSQNLAFTSDQA---GRPQVYKVNI--NGGAPQRITW-----EGSQNQDADVSSDGKFMVMVSSNGG- 333 (415)
T ss_dssp -SSCEEEEEECTTSSEEEEEECTT---SSCEEEEEET--TSSCCEECCC-----SSSEEEEEEECTTSSEEEEEEECSS-
T ss_pred -CCcccceEECCCCCEEEEEECCC---CCcEEEEEEC--CCCCEEEEec-----CCCcccCeEECCCCCEEEEEECcCC-
Confidence 11111222233566555554321 1358999998 4544444321 1112223344456666666664432
Q ss_pred CccCceEEEEccC
Q 048754 607 WVLNELHELCLAS 619 (625)
Q Consensus 607 ~~~~d~~~~~~~~ 619 (625)
...++++++.+
T Consensus 334 --~~~i~~~d~~~ 344 (415)
T 2hqs_A 334 --QQHIAKQDLAT 344 (415)
T ss_dssp --CEEEEEEETTT
T ss_pred --ceEEEEEECCC
Confidence 25677777754
No 165
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=93.72 E-value=5.9 Score=39.19 Aligned_cols=224 Identities=9% Similarity=0.046 Sum_probs=103.8
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+. .+.+||+.+. ..-..+ . .....-.+..++++ +++.|+.+ ..+.++|+.+.
T Consensus 145 ~~~~l~~~~~dg------~i~iwd~~~~-~~~~~~--~---~~~~~v~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~ 206 (401)
T 4aez_A 145 DGSFLSVGLGNG------LVDIYDVESQ-TKLRTM--A---GHQARVGCLSWNRH-VLSSGSRS-----GAIHHHDVRIA 206 (401)
T ss_dssp TSSEEEEEETTS------CEEEEETTTC-CEEEEE--C---CCSSCEEEEEEETT-EEEEEETT-----SEEEEEETTSS
T ss_pred CCCEEEEECCCC------eEEEEECcCC-eEEEEe--c---CCCCceEEEEECCC-EEEEEcCC-----CCEEEEecccC
Confidence 445566665432 3889998763 122222 1 11112233334454 66666644 36888998744
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC-C
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG-R 473 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~ 473 (625)
...-..+... . . .-.+.....++.+++.|+.+ ..+.+||+.+....... .. ...+ -.++.... +
T Consensus 207 ~~~~~~~~~~--~-~-~v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~-~~--~~~~--v~~~~~~p~~ 271 (401)
T 4aez_A 207 NHQIGTLQGH--S-S-EVCGLAWRSDGLQLASGGND------NVVQIWDARSSIPKFTK-TN--HNAA--VKAVAWCPWQ 271 (401)
T ss_dssp SCEEEEEECC--S-S-CEEEEEECTTSSEEEEEETT------SCEEEEETTCSSEEEEE-CC--CSSC--CCEEEECTTS
T ss_pred cceeeEEcCC--C-C-CeeEEEEcCCCCEEEEEeCC------CeEEEccCCCCCccEEe-cC--Ccce--EEEEEECCCC
Confidence 2223333221 1 1 11122222344566767643 36888998664422222 11 1111 12333333 3
Q ss_pred cEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEe-cCC-EEEEEecCCCC
Q 048754 474 TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSM-PCG-RIIIFGGSIAG 551 (625)
Q Consensus 474 ~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~-~l~v~GG~~~~ 551 (625)
..+++.||... ...+.+||+.+. + .+.... ... ...++.+ .++ .+++.+|..
T Consensus 272 ~~ll~~~~gs~-------d~~i~i~d~~~~--~--~~~~~~------------~~~-~v~~~~~s~~~~~l~~~~g~~-- 325 (401)
T 4aez_A 272 SNLLATGGGTM-------DKQIHFWNAATG--A--RVNTVD------------AGS-QVTSLIWSPHSKEIMSTHGFP-- 325 (401)
T ss_dssp TTEEEEECCTT-------TCEEEEEETTTC--C--EEEEEE------------CSS-CEEEEEECSSSSEEEEEECTT--
T ss_pred CCEEEEecCCC-------CCEEEEEECCCC--C--EEEEEe------------CCC-cEEEEEECCCCCeEEEEeecC--
Confidence 36777764211 257888998742 2 222220 011 1222232 244 444444542
Q ss_pred CCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 552 LHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 552 ~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
...+.+||+ .+.....+... ..... .-.++....++.+++.||.++
T Consensus 326 ---dg~i~v~~~--~~~~~~~~~~~-~~h~~-~v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 326 ---DNNLSIWSY--SSSGLTKQVDI-PAHDT-RVLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp ---TCEEEEEEE--ETTEEEEEEEE-ECCSS-CCCEEEECTTSSEEEEECTTS
T ss_pred ---CCcEEEEec--CCccceeEEEe-cCCCC-CEEEEEECCCCCEEEEEeCCC
Confidence 457888888 45445444210 00111 123444555677888887654
No 166
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=93.61 E-value=5.4 Score=38.42 Aligned_cols=226 Identities=15% Similarity=0.134 Sum_probs=103.7
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.||.+. .+.+|++.+..........-....... .++....++. ++.|+.+ ..+.++|+.++
T Consensus 108 ~~~~l~s~~~d~------~v~iw~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~-l~s~s~d-----~~i~~wd~~~~ 174 (340)
T 1got_B 108 SGNYVACGGLDN------ICSIYNLKTREGNVRVSRELAGHTGYL-SCCRFLDDNQ-IVTSSGD-----TTCALWDIETG 174 (340)
T ss_dssp TSSEEEEEETTC------EEEEEETTTCSBSCEEEEEEECCSSCE-EEEEEEETTE-EEEEETT-----SCEEEEETTTT
T ss_pred CCCEEEEEeCCC------eEEEEECccCCCcceeEEEecCCCccE-EEEEECCCCc-EEEEECC-----CcEEEEECCCC
Confidence 445666666532 377888765322222111000111111 1222234555 4455533 35888999887
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
.....-.. ... .-.+.+...++.+++.|+.+ ..+.++|+.+... -..+.. ...+ -.+++...++
T Consensus 175 --~~~~~~~~--h~~-~v~~~~~~~~~~~l~sg~~d------~~v~~wd~~~~~~-~~~~~~--h~~~--v~~v~~~p~~ 238 (340)
T 1got_B 175 --QQTTTFTG--HTG-DVMSLSLAPDTRLFVSGACD------ASAKLWDVREGMC-RQTFTG--HESD--INAICFFPNG 238 (340)
T ss_dssp --EEEEEECC--CSS-CEEEEEECTTSSEEEEEETT------SCEEEEETTTCSE-EEEECC--CSSC--EEEEEECTTS
T ss_pred --cEEEEEcC--CCC-ceEEEEECCCCCEEEEEeCC------CcEEEEECCCCee-EEEEcC--CcCC--EEEEEEcCCC
Confidence 43322111 111 11223233445677777643 3578888755431 111211 1111 1233333445
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEE-EecCCEEEEEecCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAV-SMPCGRIIIFGGSIAGLH 553 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~-~~~~~~l~v~GG~~~~~~ 553 (625)
.+++.|+.+ ..+.+||+... . .+.... .+.......++ ...++++++.|+.
T Consensus 239 ~~l~s~s~d---------~~v~iwd~~~~--~--~~~~~~----------~~~~~~~v~~~~~s~~g~~l~~g~~----- 290 (340)
T 1got_B 239 NAFATGSDD---------ATCRLFDLRAD--Q--ELMTYS----------HDNIICGITSVSFSKSGRLLLAGYD----- 290 (340)
T ss_dssp SEEEEEETT---------SCEEEEETTTT--E--EEEEEC----------CTTCCSCEEEEEECTTSSEEEEEET-----
T ss_pred CEEEEEcCC---------CcEEEEECCCC--c--EEEEEc----------cCCcccceEEEEECCCCCEEEEECC-----
Confidence 677777753 56788998732 2 222220 01111122233 3346778888775
Q ss_pred CCCcEEEEeCCCCCCCe-EEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCC
Q 048754 554 SPSQLFLLDPSEEKPSW-RILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGE 605 (625)
Q Consensus 554 ~~~~v~~~d~~~~~~~W-~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~ 605 (625)
...+.+||+. +..= ..+. + ....-.++...+++..++.||.++.
T Consensus 291 -d~~i~vwd~~--~~~~~~~~~--~---h~~~v~~~~~s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 291 -DFNCNVWDAL--KADRAGVLA--G---HDNRVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp -TSEEEEEETT--TCCEEEEEE--C---CSSCEEEEEECTTSSCEEEEETTSC
T ss_pred -CCeEEEEEcc--cCcEeeEee--c---CCCcEEEEEEcCCCCEEEEEcCCcc
Confidence 3478889983 2221 1111 1 1111123344456678888887653
No 167
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=93.57 E-value=0.015 Score=46.33 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=32.6
Q ss_pred ccccCC-CCCCcccccccccccCc-hhHHHHhhhcccCchh
Q 048754 194 QYFSGG-HSPLSQHQDICGILQLS-DEVLAHNILSRLTPRD 232 (625)
Q Consensus 194 ~~~~~~-~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~ 232 (625)
.++|.+ ..++++|+++++++||+ +|++|.++..++++++
T Consensus 12 ~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~ 52 (114)
T 1ll8_A 12 FTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSD 52 (114)
T ss_dssp EEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTT
T ss_pred EEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcch
Confidence 344766 77779999999999999 8899989988888754
No 168
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=93.56 E-value=3.2 Score=40.31 Aligned_cols=182 Identities=12% Similarity=0.037 Sum_probs=83.2
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
.+++.++.|+.++ .+.++|+.++ +-...-.. ............++..+++.|+.+ ..+.++|+.+
T Consensus 137 pdg~~l~sgs~d~-----~i~iwd~~~~--~~~~~~~~--h~~~V~~~~~~~~~~~~l~s~s~D------~~v~iwd~~~ 201 (344)
T 4gqb_B 137 SSGTQAVSGSKDI-----CIKVWDLAQQ--VVLSSYRA--HAAQVTCVAASPHKDSVFLSCSED------NRILLWDTRC 201 (344)
T ss_dssp TTSSEEEEEETTS-----CEEEEETTTT--EEEEEECC--CSSCEEEEEECSSCTTEEEEEETT------SCEEEEETTS
T ss_pred CCCCEEEEEeCCC-----eEEEEECCCC--cEEEEEcC--cCCceEEEEecCCCCCceeeeccc------cccccccccc
Confidence 3445667776543 5888999887 43322111 111111111112344577767643 2577889765
Q ss_pred CCCceEEcCCCCCCCCCCcceEEEE--CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCC
Q 048754 447 DKPMWREIPTSWSPPSRLGHSLSVY--GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAV 524 (625)
Q Consensus 447 ~~~~W~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~ 524 (625)
... -..+.. ........++.+ .++.+++.|+.+ ..+.+||+.+. +.+..+
T Consensus 202 ~~~-~~~~~~---~~~~~~~~~~~~~p~~~~~l~sg~~d---------g~v~~wd~~~~----~~~~~~----------- 253 (344)
T 4gqb_B 202 PKP-ASQIGC---SAPGYLPTSLAWHPQQSEVFVFGDEN---------GTVSLVDTKST----SCVLSS----------- 253 (344)
T ss_dssp SSC-EEECC-------CCCEEEEEECSSCTTEEEEEETT---------SEEEEEESCC------CCEEE-----------
T ss_pred cce-eeeeec---ceeeccceeeeecCCCCcceEEeccC---------CcEEEEECCCC----cEEEEE-----------
Confidence 431 222221 111111122232 234677777653 56788898742 122222
Q ss_pred CCCCccceEEEEec-CC-EEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECC-cEEEEEcC
Q 048754 525 VPPPRLDHVAVSMP-CG-RIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGG-TRVLVLGG 601 (625)
Q Consensus 525 ~p~~r~~~~~~~~~-~~-~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~-~~i~i~GG 601 (625)
......-.++.+. ++ ++++.|+.+ ..|.+||+ .+.+-... .+ ....-.++...++ ..+++-||
T Consensus 254 -~~h~~~v~~v~fsp~g~~~lasgs~D------~~i~vwd~--~~~~~~~~--~~---H~~~V~~v~~sp~~~~llas~s 319 (344)
T 4gqb_B 254 -AVHSQCVTGLVFSPHSVPFLASLSED------CSLAVLDS--SLSELFRS--QA---HRDFVRDATWSPLNHSLLTTVG 319 (344)
T ss_dssp -ECCSSCEEEEEECSSSSCCEEEEETT------SCEEEECT--TCCEEEEE--CC---CSSCEEEEEECSSSTTEEEEEE
T ss_pred -cCCCCCEEEEEEccCCCeEEEEEeCC------CeEEEEEC--CCCcEEEE--cC---CCCCEEEEEEeCCCCeEEEEEc
Confidence 0111112333332 33 566667653 36888898 44432222 11 1111122333333 45777888
Q ss_pred cCCC
Q 048754 602 HTGE 605 (625)
Q Consensus 602 ~~~~ 605 (625)
.++.
T Consensus 320 ~D~~ 323 (344)
T 4gqb_B 320 WDHQ 323 (344)
T ss_dssp TTSC
T ss_pred CCCe
Confidence 7654
No 169
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=93.30 E-value=2.5 Score=41.05 Aligned_cols=189 Identities=12% Similarity=0.068 Sum_probs=88.4
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
.++.+++.||.++ .+.++|..++ .|.............-.+.+...++.+++.|+.+ ..+.++|+.+
T Consensus 26 p~g~~las~~~D~-----~i~iw~~~~~--~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D------~~v~iw~~~~ 92 (345)
T 3fm0_A 26 PAGTLLASCGGDR-----RIRIWGTEGD--SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD------ATTCIWKKNQ 92 (345)
T ss_dssp TTSSCEEEEETTS-----CEEEEEEETT--EEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT------SCEEEEEECC
T ss_pred CCCCEEEEEcCCC-----eEEEEEcCCC--cceeeeeeccccCCcEEEEEECCCCCEEEEEECC------CcEEEEEccC
Confidence 3445677777543 4778888777 6653211000111111122222344566667643 2455666545
Q ss_pred CCCceEEcCC-CCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC
Q 048754 447 DKPMWREIPT-SWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 447 ~~~~W~~~~~-~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~ 525 (625)
.. +..+.. .+...+ -.++....++.+++.|+.+ ..+.++|+.. ...+..+...
T Consensus 93 ~~--~~~~~~~~~h~~~--v~~v~~sp~~~~l~s~s~D---------~~v~iwd~~~-~~~~~~~~~~------------ 146 (345)
T 3fm0_A 93 DD--FECVTTLEGHENE--VKSVAWAPSGNLLATCSRD---------KSVWVWEVDE-EDEYECVSVL------------ 146 (345)
T ss_dssp C---EEEEEEECCCSSC--EEEEEECTTSSEEEEEETT---------SCEEEEEECT-TSCEEEEEEE------------
T ss_pred CC--eEEEEEccCCCCC--ceEEEEeCCCCEEEEEECC---------CeEEEEECCC-CCCeEEEEEe------------
Confidence 44 433221 111111 1233333445677777754 5677888764 2344444333
Q ss_pred CCCccceEEE-EecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 526 PPPRLDHVAV-SMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 526 p~~r~~~~~~-~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
........++ ...++.+++.|+.+ ..+.+||+ .+..|..+.... .....-.++...+++..++.|+.++
T Consensus 147 ~~h~~~v~~~~~~p~~~~l~s~s~d------~~i~~w~~--~~~~~~~~~~~~--~h~~~v~~l~~sp~g~~l~s~s~D~ 216 (345)
T 3fm0_A 147 NSHTQDVKHVVWHPSQELLASASYD------DTVKLYRE--EEDDWVCCATLE--GHESTVWSLAFDPSGQRLASCSDDR 216 (345)
T ss_dssp CCCCSCEEEEEECSSSSCEEEEETT------SCEEEEEE--ETTEEEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cCcCCCeEEEEECCCCCEEEEEeCC------CcEEEEEe--cCCCEEEEEEec--CCCCceEEEEECCCCCEEEEEeCCC
Confidence 1111112222 33356777777753 36777887 466675443111 0111112333334556667776554
No 170
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=93.24 E-value=0.028 Score=45.24 Aligned_cols=40 Identities=15% Similarity=-0.002 Sum_probs=31.8
Q ss_pred cccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchh
Q 048754 193 AQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRD 232 (625)
Q Consensus 193 ~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~ 232 (625)
..++|.+..++|+|+++++++||+ +|++|..+..+.++++
T Consensus 18 i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~ 58 (120)
T 2gj3_A 18 ISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTT 58 (120)
T ss_dssp EEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTS
T ss_pred EEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCC
Confidence 334477777889999999999999 8899887777666544
No 171
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=93.16 E-value=0.023 Score=48.27 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=36.5
Q ss_pred cccccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCc
Q 048754 187 QQYDQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTP 230 (625)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~ 230 (625)
........++|.+..++++|+++++++|++ ++++|.++.+++|.
T Consensus 29 ~~~~~gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~ 73 (152)
T 3mxq_A 29 DQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPE 73 (152)
T ss_dssp HHHCCEEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG
T ss_pred hcCCCCEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC
Confidence 333445556688888899999999999999 89999999988876
No 172
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.06 E-value=4.3 Score=40.85 Aligned_cols=108 Identities=14% Similarity=0.120 Sum_probs=51.6
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
+.+++.|+.+. .+.++|+.+.. .-..+...+ ..... .+++.. .++..++.|+.++ .+.++|+.++
T Consensus 132 ~~~lasGs~dg------~i~lWd~~~~~-~~~~~~~~g-H~~~V-~~l~f~p~~~~~l~s~s~D~-----~v~iwd~~~~ 197 (435)
T 4e54_B 132 PSTVAVGSKGG------DIMLWNFGIKD-KPTFIKGIG-AGGSI-TGLKFNPLNTNQFYASSMEG-----TTRLQDFKGN 197 (435)
T ss_dssp TTCEEEEETTS------CEEEECSSCCS-CCEEECCCS-SSCCC-CEEEECSSCTTEEEEECSSS-----CEEEEETTSC
T ss_pred CCEEEEEeCCC------EEEEEECCCCC-ceeEEEccC-CCCCE-EEEEEeCCCCCEEEEEeCCC-----EEEEeeccCC
Confidence 44666676533 28888887631 111111111 11111 122221 2334666666543 4788898877
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
....+.... .......+.....++.+++.|+.+ ..+.++|+..
T Consensus 198 --~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~d------g~i~~wd~~~ 240 (435)
T 4e54_B 198 --ILRVFASSD-TINIWFCSLDVSASSRMVVTGDNV------GNVILLNMDG 240 (435)
T ss_dssp --EEEEEECCS-SCSCCCCCEEEETTTTEEEEECSS------SBEEEEESSS
T ss_pred --ceeEEeccC-CCCccEEEEEECCCCCEEEEEeCC------CcEeeeccCc
Confidence 554443221 111111233334455677777643 3578888744
No 173
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=93.05 E-value=5.3 Score=36.67 Aligned_cols=231 Identities=9% Similarity=-0.032 Sum_probs=108.1
Q ss_pred CCEEEE-EcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVL-FGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv-~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.||+ .... .+.+++++..+ .....+..... ..-++++...++.+|+... . +.+++||+.+
T Consensus 34 ~g~l~v~~~~~------~~~i~~~~~~~--~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~-~-----~~i~~~d~~~ 96 (270)
T 1rwi_B 34 AGNVYVTSEGM------YGRVVKLATGS--TGTTVLPFNGL---YQPQGLAVDGAGTVYVTDF-N-----NRVVTLAAGS 96 (270)
T ss_dssp TCCEEEEECSS------SCEEEEECC-------EECCCCSC---CSCCCEEECTTCCEEEEET-T-----TEEEEECTTC
T ss_pred CCCEEEEccCC------CCcEEEecCCC--cccceEeeCCc---CCcceeEECCCCCEEEEcC-C-----CEEEEEeCCC
Confidence 457888 5332 12378888765 23332211111 1113344433456888765 2 3689999877
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECC
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGR 473 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 473 (625)
. ....+... ....-+..+...++.+|+.... ...+++|+..+.. .......... .-.++++..+
T Consensus 97 ~--~~~~~~~~---~~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~--~~~~~~~~~~---~p~~i~~~~~ 160 (270)
T 1rwi_B 97 N--NQTVLPFD---GLNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKT--QTVLPFTGLN---DPDGVAVDNS 160 (270)
T ss_dssp S--CCEECCCC---SCSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCS--CEECCCCSCC---SCCCEEECTT
T ss_pred c--eEeeeecC---CcCCCcceEECCCCCEEEEECC------CCEEEEEECCCce--eEeeccccCC---CceeEEEeCC
Confidence 6 33333221 1111123333335578886432 2367888754432 3332211111 1234445445
Q ss_pred cEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCC
Q 048754 474 TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLH 553 (625)
Q Consensus 474 ~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 553 (625)
+++|+.... ...+.+||+.. ..-...... . .......+.-.++.||+....
T Consensus 161 g~l~v~~~~---------~~~i~~~~~~~--~~~~~~~~~------------~-~~~p~~i~~d~~g~l~v~~~~----- 211 (270)
T 1rwi_B 161 GNVYVTDTD---------NNRVVKLEAES--NNQVVLPFT------------D-ITAPWGIAVDEAGTVYVTEHN----- 211 (270)
T ss_dssp CCEEEEEGG---------GTEEEEECTTT--CCEEECCCS------------S-CCSEEEEEECTTCCEEEEETT-----
T ss_pred CCEEEEECC---------CCEEEEEecCC--CceEeeccc------------C-CCCceEEEECCCCCEEEEECC-----
Confidence 578887442 25788898873 222111110 1 111123333335688887542
Q ss_pred CCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 554 SPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 554 ~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
.+.|++|++. ...-..... . ....-.++++..++.||+.... -+.|.+|++..+
T Consensus 212 -~~~v~~~~~~--~~~~~~~~~-~---~~~~p~~i~~~~~g~l~v~~~~------~~~v~~~~~~~~ 265 (270)
T 1rwi_B 212 -TNQVVKLLAG--STTSTVLPF-T---GLNTPLAVAVDSDRTVYVADRG------NDRVVKLTSLEH 265 (270)
T ss_dssp -TSCEEEECTT--CSCCEECCC-C---SCSCEEEEEECTTCCEEEEEGG------GTEEEEECCCGG
T ss_pred -CCcEEEEcCC--CCcceeecc-C---CCCCceeEEECCCCCEEEEECC------CCEEEEEcCCCc
Confidence 3579999983 322222211 1 1111233444455677776542 245777777554
No 174
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=92.93 E-value=7.1 Score=37.80 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=33.6
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
+..||+.+.... ....+.+|++...+.+.+.+.......... ...+ ++++.+|+.+..+ ..+.+|++.+.
T Consensus 61 g~~l~~~~~~~~---~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p-~~~~-~dg~~l~~~~~~~-----~~v~~~~~~~~ 130 (361)
T 3scy_A 61 GKFVYSVNEFSK---DQAAVSAFAFDKEKGTLHLLNTQKTMGADP-CYLT-TNGKNIVTANYSG-----GSITVFPIGQD 130 (361)
T ss_dssp SSEEEEEECCSS---TTCEEEEEEEETTTTEEEEEEEEECSSSCE-EEEE-ECSSEEEEEETTT-----TEEEEEEBCTT
T ss_pred CCEEEEEEccCC---CCCcEEEEEEeCCCCcEEEeeEeccCCCCc-EEEE-ECCCEEEEEECCC-----CEEEEEEeCCC
Confidence 445777665311 123366666654334565553111111111 2222 2677777765322 35788887643
No 175
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=92.81 E-value=7.4 Score=37.68 Aligned_cols=214 Identities=15% Similarity=0.171 Sum_probs=105.5
Q ss_pred EEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEec----CCCCCce-EEcCCCCCC
Q 048754 386 VFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDL----TTDKPMW-REIPTSWSP 460 (625)
Q Consensus 386 ~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~----~~~~~~W-~~~~~~~~p 460 (625)
-|.+-..-....|+...-+..|..-.-|+.|.++++ -|++|= ..+......+-.+-. .+....- ..++.. ..
T Consensus 260 ~W~~~T~F~~spW~~t~L~~i~~vTe~HSFa~i~~~-~fa~Gy-HnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~se-y~ 336 (670)
T 3ju4_A 260 NWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNN-GFAMGY-HQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSE-YE 336 (670)
T ss_dssp EEEEEECSTTSCCEEEECCSCTTCSEEEEEEECSSS-CEEEEE-EECSSSSCEEEEEEETTTTTCTTCCEEEECCGG-GC
T ss_pred eeeeeeeeccCCceecccccccceeeeeeeeEecCC-ceEEEe-ccCCCCcceeeEEEecccccCCcceeeeechhh-hc
Confidence 566654333336876554445667778999999665 456653 222222233333221 1111111 222221 11
Q ss_pred CCCCcceEEEECCcEEEEEc-CCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecC
Q 048754 461 PSRLGHSLSVYGRTKVLMFG-GLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPC 539 (625)
Q Consensus 461 ~~r~~~~~~~~~~~~l~v~G-G~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~ 539 (625)
..-...|.-.+++ .||+.- |...... -..+.+-+.. ...|..+.... ........ +...+
T Consensus 337 ~~AsEPCvkyYdg-vLyLtTRgt~~~~~----GS~L~rs~d~--Gq~w~slrfp~-----------nvHhtnlP-Fakvg 397 (670)
T 3ju4_A 337 PDASEPCIKYYDG-VLYLITRGTRGDRL----GSSLHRSRDI--GQTWESLRFPH-----------NVHHTTLP-FAKVG 397 (670)
T ss_dssp TTEEEEEEEEETT-EEEEEEEESCTTSC----CCEEEEESST--TSSCEEEECTT-----------CCCSSCCC-EEEET
T ss_pred cccccchhhhhCC-EEEEEecCcCCCCC----cceeeeeccc--CCchhheeccc-----------cccccCCC-cceeC
Confidence 1111123333444 999875 3333222 2455555555 56899886431 11111112 33338
Q ss_pred CEEEEEecCCCC---------CC---CCCcEEE--EeCC---CCCCCeEEEcC---CCCCCCCCCcceEEEECCcEEE-E
Q 048754 540 GRIIIFGGSIAG---------LH---SPSQLFL--LDPS---EEKPSWRILNV---PGQPPKFAWGHSTCVVGGTRVL-V 598 (625)
Q Consensus 540 ~~l~v~GG~~~~---------~~---~~~~v~~--~d~~---~~~~~W~~v~~---~~~~p~~r~~~~~~~~~~~~i~-i 598 (625)
+.|||||-.... .. ..+..+. .++. -++-+|..+.. .|..-..-.+-+.+++.|+.|| |
T Consensus 398 D~l~mFgsERA~nEWE~G~pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyi 477 (670)
T 3ju4_A 398 DDLIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYM 477 (670)
T ss_dssp TEEEEEEECSSTTCSSTTCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEE
T ss_pred CEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEE
Confidence 999999864311 11 1334443 3331 13557777652 2333334456667777777776 7
Q ss_pred EcCcCCCC-------C---------ccCceEEEEccCCC
Q 048754 599 LGGHTGEE-------W---------VLNELHELCLASKQ 621 (625)
Q Consensus 599 ~GG~~~~~-------~---------~~~d~~~~~~~~~~ 621 (625)
|||.+-.+ . --.|+|.|.+.-.+
T Consensus 478 FGgEd~~np~s~gdN~~k~~~~~~Ghp~dlY~~ri~i~~ 516 (670)
T 3ju4_A 478 FGGEDHFNPWTYGDNSAKDPFKSDGHPSDLYCYKMKIGP 516 (670)
T ss_dssp EEEBCSCCCCTTTTTTTCCTTSTTCCCCEEEEEEEECSC
T ss_pred ecCcccCCccccccccccCccccCCCCcceEEEEEEecC
Confidence 99976321 1 24678888775443
No 176
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=92.71 E-value=0.036 Score=44.57 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=31.8
Q ss_pred cccccCCCCCCcccccccccccCc-hhHHHHhhhcccCch
Q 048754 193 AQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPR 231 (625)
Q Consensus 193 ~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~ 231 (625)
..++|.+..++++|+++++++|++ ++++|.++.++++++
T Consensus 32 i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~ 71 (125)
T 3fc7_A 32 IVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSE 71 (125)
T ss_dssp EEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHH
T ss_pred EEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHH
Confidence 334577777889999999999999 888988888888443
No 177
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=92.70 E-value=7.2 Score=37.25 Aligned_cols=179 Identities=12% Similarity=0.123 Sum_probs=88.2
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEE-EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWI-EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
+..+++.|+.++ .+.++|+.+. +-. .+... +.. . .+.+...++..++.|+.+ ..+.+||+.+
T Consensus 91 ~~~~l~s~s~D~-----~i~lWd~~~~--~~~~~~~~~--~~~-~-~~~~~spdg~~l~~g~~d------g~v~i~~~~~ 153 (321)
T 3ow8_A 91 TLPIAASSSLDA-----HIRLWDLENG--KQIKSIDAG--PVD-A-WTLAFSPDSQYLATGTHV------GKVNIFGVES 153 (321)
T ss_dssp SSSEEEEEETTS-----EEEEEETTTT--EEEEEEECC--TTC-C-CCEEECTTSSEEEEECTT------SEEEEEETTT
T ss_pred CCCEEEEEeCCC-----cEEEEECCCC--CEEEEEeCC--Ccc-E-EEEEECCCCCEEEEEcCC------CcEEEEEcCC
Confidence 334666666443 5888998877 433 23221 111 1 123333445666767632 3678888766
Q ss_pred CCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCC
Q 048754 447 DKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVP 526 (625)
Q Consensus 447 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p 526 (625)
....+..... ...-.+++...++++++.|+.+ ..+.+||+.+. ..+.... ..
T Consensus 154 ~~~~~~~~~~-----~~~v~~~~~spdg~~lasg~~d---------g~i~iwd~~~~----~~~~~~~----------~h 205 (321)
T 3ow8_A 154 GKKEYSLDTR-----GKFILSIAYSPDGKYLASGAID---------GIINIFDIATG----KLLHTLE----------GH 205 (321)
T ss_dssp CSEEEEEECS-----SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTT----EEEEEEC----------CC
T ss_pred CceeEEecCC-----CceEEEEEECCCCCEEEEEcCC---------CeEEEEECCCC----cEEEEEc----------cc
Confidence 5433322111 1112233344455677777653 56888998732 2232220 00
Q ss_pred CCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 527 PPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 527 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
.. .-.++....++++++.|+.+ ..+.+||+ .+......-. + ....-.++...+++..++.||.++
T Consensus 206 ~~-~v~~l~~spd~~~l~s~s~d------g~i~iwd~--~~~~~~~~~~-~---h~~~v~~~~~sp~~~~l~s~s~D~ 270 (321)
T 3ow8_A 206 AM-PIRSLTFSPDSQLLVTASDD------GYIKIYDV--QHANLAGTLS-G---HASWVLNVAFCPDDTHFVSSSSDK 270 (321)
T ss_dssp SS-CCCEEEECTTSCEEEEECTT------SCEEEEET--TTCCEEEEEC-C---CSSCEEEEEECTTSSEEEEEETTS
T ss_pred CC-ceeEEEEcCCCCEEEEEcCC------CeEEEEEC--CCcceeEEEc-C---CCCceEEEEECCCCCEEEEEeCCC
Confidence 11 11233333467788887753 46888998 3333322211 1 111112333344567777777655
No 178
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=92.68 E-value=0.023 Score=45.74 Aligned_cols=45 Identities=11% Similarity=0.032 Sum_probs=35.2
Q ss_pred ccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhh
Q 048754 190 DQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 190 ~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~ 234 (625)
.....++|.+..++++|+++++++|++ ++++|.++.+++++....
T Consensus 22 ~~~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~ 67 (118)
T 3fg8_A 22 GLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGS 67 (118)
T ss_dssp TCEEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTS
T ss_pred CceEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchH
Confidence 333445588888889999999999999 888988888887765433
No 179
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=92.66 E-value=2.4 Score=46.28 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=35.1
Q ss_pred cCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEc
Q 048754 538 PCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCL 617 (625)
Q Consensus 538 ~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~ 617 (625)
.+++.++++..+.. ....+++.+|+ .+.+...+.............+.....++++++.++.++ ...+|.+++
T Consensus 295 pDg~~l~~~~~~~~-~~~~~i~~~d~--~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g----~~~l~~~~~ 367 (741)
T 2ecf_A 295 RDPQHLSFQRQSRD-QKKLDLVEVTL--ASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTG----FQHLYRIDS 367 (741)
T ss_dssp EETTEEEEEEEETT-SSEEEEEEEET--TTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTS----SCEEEEECS
T ss_pred CCCCEEEEEEeccc-CCeEEEEEEEC--CCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCC----ccEEEEEcC
Confidence 45555554443221 22468999999 566665553211100000112334445666666665443 245666664
No 180
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=92.62 E-value=0.019 Score=45.58 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=31.0
Q ss_pred cccccCCCCCCcccccccccccCc-hhHHHHhhhcccCch
Q 048754 193 AQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPR 231 (625)
Q Consensus 193 ~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~ 231 (625)
..++|.+..++++|+++++++||+ ++++|..+..+++..
T Consensus 26 i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~ 65 (118)
T 3olo_A 26 SFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDF 65 (118)
T ss_dssp EEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTG
T ss_pred EEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChhhccccc
Confidence 334577777889999999999999 888888877776543
No 181
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=92.54 E-value=8.2 Score=37.52 Aligned_cols=189 Identities=11% Similarity=0.033 Sum_probs=86.9
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
.+++.++.|+.++ .+.++|..++ +....-.. ..... .+.+.. +++.+++.||.+ ..+.++|+.
T Consensus 149 pdg~~l~sgs~dg-----~v~iwd~~~~--~~~~~~~~--h~~~v-~~v~~s~~~~~~~~s~~~d------g~v~~wd~~ 212 (357)
T 4g56_B 149 SDGTQAVSGGKDF-----SVKVWDLSQK--AVLKSYNA--HSSEV-NCVAACPGKDTIFLSCGED------GRILLWDTR 212 (357)
T ss_dssp SSSSEEEEEETTS-----CEEEEETTTT--EEEEEECC--CSSCE-EEEEECTTCSSCEEEEETT------SCEEECCTT
T ss_pred CCCCEEEEEeCCC-----eEEEEECCCC--cEEEEEcC--CCCCE-EEEEEccCCCceeeeeccC------CceEEEECC
Confidence 3445667776543 5888999887 43322111 11111 112222 333466666643 257778875
Q ss_pred CCCCceEEcCCCCCCCCCCcceEEEE--CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCC
Q 048754 446 TDKPMWREIPTSWSPPSRLGHSLSVY--GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSA 523 (625)
Q Consensus 446 ~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~ 523 (625)
+.. -..... .........++.+ .++.+++.|+.+ ..+.+||+.+. + .+...
T Consensus 213 ~~~--~~~~~~--~~~~~~~v~~v~~sp~~~~~la~g~~d---------~~i~~wd~~~~--~--~~~~~---------- 265 (357)
T 4g56_B 213 KPK--PATRID--FCASDTIPTSVTWHPEKDDTFACGDET---------GNVSLVNIKNP--D--SAQTS---------- 265 (357)
T ss_dssp SSS--CBCBCC--CTTCCSCEEEEEECTTSTTEEEEEESS---------SCEEEEESSCG--G--GCEEE----------
T ss_pred CCc--eeeeee--eccccccccchhhhhcccceEEEeecc---------cceeEEECCCC--c--EeEEE----------
Confidence 543 111110 1111111223333 233677777653 56888998732 1 12222
Q ss_pred CCCCCccceEEEEec-CC-EEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEEC-CcEEEEEc
Q 048754 524 VVPPPRLDHVAVSMP-CG-RIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVG-GTRVLVLG 600 (625)
Q Consensus 524 ~~p~~r~~~~~~~~~-~~-~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~-~~~i~i~G 600 (625)
........++.+. ++ ++++.|+.+ ..|.+||+ .+.+-... .+ ....-.+++..+ ++.+++-|
T Consensus 266 --~~~~~~v~~l~~sp~~~~~lasgs~D------~~i~iwd~--~~~~~~~~--~~---H~~~V~~vafsP~d~~~l~s~ 330 (357)
T 4g56_B 266 --AVHSQNITGLAYSYHSSPFLASISED------CTVAVLDA--DFSEVFRD--LS---HRDFVTGVAWSPLDHSKFTTV 330 (357)
T ss_dssp --CCCSSCEEEEEECSSSSCCEEEEETT------SCEEEECT--TSCEEEEE--CC---CSSCEEEEEECSSSTTEEEEE
T ss_pred --eccceeEEEEEEcCCCCCEEEEEeCC------CEEEEEEC--CCCcEeEE--CC---CCCCEEEEEEeCCCCCEEEEE
Confidence 1111122333332 33 566666642 46888998 44433222 11 111112233332 56788888
Q ss_pred CcCCCCCccCceEEEEccC
Q 048754 601 GHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 601 G~~~~~~~~~d~~~~~~~~ 619 (625)
|.++. |.+.++.+
T Consensus 331 s~Dg~------v~iW~~~~ 343 (357)
T 4g56_B 331 GWDHK------VLHHHLPS 343 (357)
T ss_dssp ETTSC------EEEEECC-
T ss_pred cCCCe------EEEEECCC
Confidence 86653 44555544
No 182
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=92.48 E-value=7.9 Score=37.22 Aligned_cols=223 Identities=14% Similarity=0.117 Sum_probs=101.0
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.||.+. .+.++|+.+. ..-..+. ... ..-.+++...++..++.||.+ ..+.+||+.+.
T Consensus 66 d~~~l~s~s~Dg------~v~iWd~~~~-~~~~~~~---~~~-~~v~~~~~s~~~~~l~s~~~d-----~~v~iw~~~~~ 129 (340)
T 1got_B 66 DSRLLLSASQDG------KLIIWDSYTT-NKVHAIP---LRS-SWVMTCAYAPSGNYVACGGLD-----NICSIYNLKTR 129 (340)
T ss_dssp TSSEEEEEETTT------EEEEEETTTC-CEEEEEE---CSS-SCEEEEEECTTSSEEEEEETT-----CEEEEEETTTC
T ss_pred CCCEEEEEeCCC------cEEEEECCCC-CcceEee---cCC-ccEEEEEECCCCCEEEEEeCC-----CeEEEEECccC
Confidence 345666666533 2778887653 1122221 111 111222223344566777754 35788888765
Q ss_pred CCEEE---EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceE-EcCCCCCCCCCCcceEEE
Q 048754 395 QPTWI---EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWR-EIPTSWSPPSRLGHSLSV 470 (625)
Q Consensus 395 ~~~W~---~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~-~~~~~~~p~~r~~~~~~~ 470 (625)
+.... .+... .... .++...+++. ++.|+.+ ..+.++|+.+.. .. .+.. ...+ -.++..
T Consensus 130 ~~~~~~~~~~~~h---~~~v-~~~~~~~~~~-l~s~s~d------~~i~~wd~~~~~--~~~~~~~--h~~~--v~~~~~ 192 (340)
T 1got_B 130 EGNVRVSRELAGH---TGYL-SCCRFLDDNQ-IVTSSGD------TTCALWDIETGQ--QTTTFTG--HTGD--VMSLSL 192 (340)
T ss_dssp SBSCEEEEEEECC---SSCE-EEEEEEETTE-EEEEETT------SCEEEEETTTTE--EEEEECC--CSSC--EEEEEE
T ss_pred CCcceeEEEecCC---CccE-EEEEECCCCc-EEEEECC------CcEEEEECCCCc--EEEEEcC--CCCc--eEEEEE
Confidence 22111 12111 1111 1222334555 4445432 357788976543 22 1111 1111 123333
Q ss_pred ECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCC
Q 048754 471 YGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIA 550 (625)
Q Consensus 471 ~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~ 550 (625)
..++.+++.|+.+ ..+.++|+.+. . .+.... .....-.++....++++++.|+.
T Consensus 193 ~~~~~~l~sg~~d---------~~v~~wd~~~~--~--~~~~~~-----------~h~~~v~~v~~~p~~~~l~s~s~-- 246 (340)
T 1got_B 193 APDTRLFVSGACD---------ASAKLWDVREG--M--CRQTFT-----------GHESDINAICFFPNGNAFATGSD-- 246 (340)
T ss_dssp CTTSSEEEEEETT---------SCEEEEETTTC--S--EEEEEC-----------CCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCCEEEEEeCC---------CcEEEEECCCC--e--eEEEEc-----------CCcCCEEEEEEcCCCCEEEEEcC--
Confidence 4455677777764 57788898732 2 222220 00111123333346778888775
Q ss_pred CCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 551 GLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 551 ~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
...+.+||+ .+..-..... .......-.++...+++.+++.|+.++
T Consensus 247 ----d~~v~iwd~--~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~g~~d~ 292 (340)
T 1got_B 247 ----DATCRLFDL--RADQELMTYS--HDNIICGITSVSFSKSGRLLLAGYDDF 292 (340)
T ss_dssp ----TSCEEEEET--TTTEEEEEEC--CTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ----CCcEEEEEC--CCCcEEEEEc--cCCcccceEEEEECCCCCEEEEECCCC
Confidence 346888888 3332211111 110000112333445667777777554
No 183
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=92.38 E-value=9.1 Score=37.67 Aligned_cols=222 Identities=9% Similarity=-0.051 Sum_probs=100.3
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+. .+.+||... .....+. . .. ..-.+++...++..++.|+.+ ..+.+||+.+.
T Consensus 119 ~~~~l~~~~~dg------~i~i~~~~~--~~~~~~~--~-~~-~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~ 181 (425)
T 1r5m_A 119 DGNSIVTGVENG------ELRLWNKTG--ALLNVLN--F-HR-APIVSVKWNKDGTHIISMDVE-----NVTILWNVISG 181 (425)
T ss_dssp TSSEEEEEETTS------CEEEEETTS--CEEEEEC--C-CC-SCEEEEEECTTSSEEEEEETT-----CCEEEEETTTT
T ss_pred CCCEEEEEeCCC------eEEEEeCCC--Ceeeecc--C-CC-ccEEEEEECCCCCEEEEEecC-----CeEEEEECCCC
Confidence 345666666432 378888433 2333331 1 11 111222222334455566543 35888998877
Q ss_pred CCEEEE-cCCCCCC-----------CCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCC
Q 048754 395 QPTWIE-VSGGAPP-----------LPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPS 462 (625)
Q Consensus 395 ~~~W~~-~~~~~~p-----------~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~ 462 (625)
.... +.....+ ......+.+...++ .++.|+.. ..+.+||+.+....... .. ...+
T Consensus 182 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------g~i~~~d~~~~~~~~~~-~~--~~~~ 249 (425)
T 1r5m_A 182 --TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPK------GAIFVYQITEKTPTGKL-IG--HHGP 249 (425)
T ss_dssp --EEEEEECCC---------------CCCBSCCEEEETT-EEEEECGG------GCEEEEETTCSSCSEEE-CC--CSSC
T ss_pred --cEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCC------CeEEEEEcCCCceeeee-cc--CCCc
Confidence 4332 2211101 00002233334454 45666632 46889998665432222 11 1111
Q ss_pred CCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEE
Q 048754 463 RLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542 (625)
Q Consensus 463 r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 542 (625)
-.++....++.+++.|+.+ ..+.+||+.+. .. +.... .....-.++....++ +
T Consensus 250 --i~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~--~~--~~~~~-----------~~~~~i~~~~~~~~~-~ 302 (425)
T 1r5m_A 250 --ISVLEFNDTNKLLLSASDD---------GTLRIWHGGNG--NS--QNCFY-----------GHSQSIVSASWVGDD-K 302 (425)
T ss_dssp --EEEEEEETTTTEEEEEETT---------SCEEEECSSSB--SC--SEEEC-----------CCSSCEEEEEEETTT-E
T ss_pred --eEEEEECCCCCEEEEEcCC---------CEEEEEECCCC--cc--ceEec-----------CCCccEEEEEECCCC-E
Confidence 1233344444566666643 56788888732 21 11110 111112233333355 6
Q ss_pred EEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 543 IIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 543 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
++.|+. ...+.+||+ .+..-..... + ....-.++....++.+++.|+.++
T Consensus 303 l~~~~~------d~~i~i~d~--~~~~~~~~~~-~---~~~~i~~~~~s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 303 VISCSM------DGSVRLWSL--KQNTLLALSI-V---DGVPIFAGRISQDGQKYAVAFMDG 352 (425)
T ss_dssp EEEEET------TSEEEEEET--TTTEEEEEEE-C---TTCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEeC------CCcEEEEEC--CCCcEeEecc-c---CCccEEEEEEcCCCCEEEEEECCC
Confidence 666664 347889998 3333222111 0 111122334445667788887554
No 184
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=92.30 E-value=3.5 Score=45.16 Aligned_cols=205 Identities=12% Similarity=0.113 Sum_probs=94.6
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cC--CEEEEEccCCCCCccccEEEEECC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NG--SWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
+.+++.|+.+. .+.++|+.+ ..|..+....... ..-.++.+ .+ +.+++.|+.++ .+.+||+.
T Consensus 67 ~~~l~s~s~Dg------~I~vwd~~~--~~~~~~~~~~~h~--~~V~~v~~sp~~~~~~l~sgs~dg-----~I~vwdl~ 131 (753)
T 3jro_A 67 GTILASCSYDG------KVLIWKEEN--GRWSQIAVHAVHS--ASVNSVQWAPHEYGPLLLVASSDG-----KVSVVEFK 131 (753)
T ss_dssp CSEEEEEETTS------CEEEEEEET--TEEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEETTS-----EEEEEECC
T ss_pred CCEEEEEeCCC------eEEEEECCC--CcccccccccCCC--CCeEEEEECCCCCCCEEEEEeCCC-----cEEEEEee
Confidence 55666776533 288899887 5665543221111 11222222 22 45777777543 58888876
Q ss_pred CCCCE-EEEcCCCCCCCCCccceEEEE-c-------------CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCC
Q 048754 393 AKQPT-WIEVSGGAPPLPRSWHSSCII-E-------------GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTS 457 (625)
Q Consensus 393 t~~~~-W~~~~~~~~p~~r~~~~~~~~-~-------------~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~ 457 (625)
+.... -..+... +.+ -.++.+ . ++.+++.|+.+ ..+.+||+.+....+..+..-
T Consensus 132 ~~~~~~~~~~~~~--~~~---v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~~ 200 (753)
T 3jro_A 132 ENGTTSPIIIDAH--AIG---VNSASWAPATIEEDGEHNGTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLESTL 200 (753)
T ss_dssp SSSCCCCEEEECC--SSC---EEEEEECCCC---------CGGGCCEEEEETT------SCEEEEEEETTTTEEEEEEEE
T ss_pred cCCCcceeEeecC--CCc---eEEEEecCcccccccccccCCCCCEEEEEECC------CeEEEEeccCCcccceeeeee
Confidence 65111 0111110 100 111122 1 23556666632 257788876655445443210
Q ss_pred CCCCCCCcceEEEECC---cEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEE
Q 048754 458 WSPPSRLGHSLSVYGR---TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVA 534 (625)
Q Consensus 458 ~~p~~r~~~~~~~~~~---~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~ 534 (625)
......-.+++...+ +.+++.||.+ ..+.+||+.+....+...... .......-.++
T Consensus 201 -~~h~~~V~~l~~sp~~~~~~~l~s~s~D---------g~I~iwd~~~~~~~~~~~~~~----------~~~~~~~v~~l 260 (753)
T 3jro_A 201 -EGHSDWVRDVAWSPTVLLRSYLASVSQD---------RTCIIWTQDNEQGPWKKTLLK----------EEKFPDVLWRA 260 (753)
T ss_dssp -CCCSSCEEEEEECCCCSSSEEEEEEESS---------SCEEEEEESSSSSCCBCCBSS----------SSCCSSCCCCE
T ss_pred -cCCCCcEEEEEeccCCCCCCEEEEEecC---------CEEEEecCCCCCCcceeEEec----------cCCCCCceEEE
Confidence 001111123333334 5788887764 567788887432222211111 00111111223
Q ss_pred EEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEE
Q 048754 535 VSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRIL 573 (625)
Q Consensus 535 ~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v 573 (625)
....++..++.||.+ ..|.+||+. ....|...
T Consensus 261 ~~spdg~~l~s~s~D------g~I~vwd~~-~~~~~~~~ 292 (753)
T 3jro_A 261 SWSLSGNVLALSGGD------NKVTLWKEN-LEGKWEPA 292 (753)
T ss_dssp EECTTTCCEEEECSS------SCEECCBCC-SSSCCBCC
T ss_pred EEcCCCCEEEEEcCC------CEEEEEecC-CCCCcccc
Confidence 333467777777753 356666663 23455444
No 185
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=92.25 E-value=7 Score=36.05 Aligned_cols=99 Identities=9% Similarity=0.103 Sum_probs=51.3
Q ss_pred ccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC-CCCceEEcCCCCCC
Q 048754 382 LLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT-DKPMWREIPTSWSP 460 (625)
Q Consensus 382 ~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~-~~~~W~~~~~~~~p 460 (625)
....++++|+.++ ....+... + . .-.+.....+++.+++++ . ..++++|+.+ .. ...+... .
T Consensus 20 ~~~~i~~~d~~~~--~~~~~~~~--~-~-~v~~~~~spdg~~l~~~~---~----~~i~~~d~~~~~~--~~~~~~~--~ 82 (297)
T 2ojh_A 20 MRSSIEIFNIRTR--KMRVVWQT--P-E-LFEAPNWSPDGKYLLLNS---E----GLLYRLSLAGDPS--PEKVDTG--F 82 (297)
T ss_dssp CCEEEEEEETTTT--EEEEEEEE--S-S-CCEEEEECTTSSEEEEEE---T----TEEEEEESSSCCS--CEECCCT--T
T ss_pred cceeEEEEeCCCC--ceeeeccC--C-c-ceEeeEECCCCCEEEEEc---C----CeEEEEeCCCCCC--ceEeccc--c
Confidence 3467999999888 65544321 1 1 112232333445555553 1 3789999876 54 5554421 1
Q ss_pred CCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 461 PSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 461 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
....-.++....+++.+++++..... ...+|.+++.+
T Consensus 83 ~~~~~~~~~~spdg~~l~~~~~~~~~-----~~~l~~~~~~~ 119 (297)
T 2ojh_A 83 ATICNNDHGISPDGALYAISDKVEFG-----KSAIYLLPSTG 119 (297)
T ss_dssp CCCBCSCCEECTTSSEEEEEECTTTS-----SCEEEEEETTC
T ss_pred ccccccceEECCCCCEEEEEEeCCCC-----cceEEEEECCC
Confidence 11111233344444555555533222 36888898873
No 186
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=91.97 E-value=16 Score=39.56 Aligned_cols=17 Identities=18% Similarity=0.536 Sum_probs=13.4
Q ss_pred cEEEEECCCCCCEEEEcCC
Q 048754 385 DVFVLDLDAKQPTWIEVSG 403 (625)
Q Consensus 385 ~~~~~d~~t~~~~W~~~~~ 403 (625)
.++++|+.++ ....+..
T Consensus 173 ~i~~~d~~~g--~~~~~~~ 189 (741)
T 2ecf_A 173 NLWVIDLASG--RQMQLTA 189 (741)
T ss_dssp EEEEEETTTT--EEEECCC
T ss_pred cEEEEecCCC--CEEEecc
Confidence 7999999887 7776654
No 187
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=91.85 E-value=5.5 Score=39.07 Aligned_cols=152 Identities=12% Similarity=0.048 Sum_probs=68.8
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.+++.|+.+. .+.++|+.+. .-.... ..+.+......... .++.+++.|+.+ ..+.+||+.+
T Consensus 111 ~~~~l~s~~~d~------~i~iwd~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~d~~~ 175 (408)
T 4a11_B 111 DTGMFTSSSFDK------TLKVWDTNTL--QTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRG-----PKVQLCDLKS 175 (408)
T ss_dssp CTTCEEEEETTS------EEEEEETTTT--EEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESS-----SSEEEEESSS
T ss_pred CCcEEEEEeCCC------eEEEeeCCCC--ccceec--cCCCceeeeEeecCCCCCcEEEEEcCC-----CeEEEEeCCC
Confidence 344666666432 3888888762 322221 11111111111111 123366666643 3588999887
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEE--cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCC------C----CC
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCII--EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSW------S----PP 461 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~------~----p~ 461 (625)
.+... .+... .. . -.++.+ ++..+++.|+.+ ..+.+||+.+.......+.... . ..
T Consensus 176 ~~~~~-~~~~~---~~-~-v~~~~~~~~~~~ll~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (408)
T 4a11_B 176 GSCSH-ILQGH---RQ-E-ILAVSWSPRYDYILATASAD------SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA 243 (408)
T ss_dssp SCCCE-EECCC---CS-C-EEEEEECSSCTTEEEEEETT------SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCS
T ss_pred cceee-eecCC---CC-c-EEEEEECCCCCcEEEEEcCC------CcEEEEECCCCCcccccccccccccceeecccccc
Confidence 63222 22211 11 1 122223 233367767632 2578888765443333332100 0 00
Q ss_pred CCC-cceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 462 SRL-GHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 462 ~r~-~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
... -.++....++..++.|+.+ ..+.+||+.+
T Consensus 244 ~~~~v~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~ 276 (408)
T 4a11_B 244 HNGKVNGLCFTSDGLHLLTVGTD---------NRMRLWNSSN 276 (408)
T ss_dssp CSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTT
T ss_pred ccCceeEEEEcCCCCEEEEecCC---------CeEEEEECCC
Confidence 111 1223333344566666643 5688899874
No 188
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=91.77 E-value=11 Score=39.23 Aligned_cols=248 Identities=13% Similarity=0.098 Sum_probs=113.5
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEec--cCCCCce-EEcccCCCCCCccceeEEEE-----cCCEEEEEccCCCCCccccE
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNL--DAANPEW-RRVSVKSSPPGRWGHTLSSL-----NGSWLVVFGGCGRQGLLNDV 386 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~--~~~~~~W-~~~~~~~~p~~r~~~~~~~~-----~~~~iyv~GG~~~~~~~~~~ 386 (625)
+..||+.+.- +.+.+||+ .+ .+- ..+. ....-..++.. +++++|+..-. .+.+
T Consensus 190 g~~l~v~~~d-------~~V~v~D~~~~t--~~~~~~i~-----~g~~p~~va~sp~~~~dg~~l~v~~~~-----~~~v 250 (543)
T 1nir_A 190 GRYLLVIGRD-------ARIDMIDLWAKE--PTKVAEIK-----IGIEARSVESSKFKGYEDRYTIAGAYW-----PPQF 250 (543)
T ss_dssp SCEEEEEETT-------SEEEEEETTSSS--CEEEEEEE-----CCSEEEEEEECCSTTCTTTEEEEEEEE-----SSEE
T ss_pred CCEEEEECCC-------CeEEEEECcCCC--CcEEEEEe-----cCCCcceEEeCCCcCCCCCEEEEEEcc-----CCeE
Confidence 4567776531 45999999 44 222 2222 11111223333 45666665422 2457
Q ss_pred EEEECCCCCCEEEEcCC--CC------CCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCce-EEcCCC
Q 048754 387 FVLDLDAKQPTWIEVSG--GA------PPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMW-REIPTS 457 (625)
Q Consensus 387 ~~~d~~t~~~~W~~~~~--~~------~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W-~~~~~~ 457 (625)
.++|..+.+.. ..++. +. .|.+|..+....-++..+|+... ..+.++++|..+..... ..++
T Consensus 251 ~v~D~~t~~~~-~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~------~~g~i~vvd~~~~~~l~~~~i~-- 321 (543)
T 1nir_A 251 AIMDGETLEPK-QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK------ETGKVLLVNYKDIDNLTVTSIG-- 321 (543)
T ss_dssp EEEETTTCCEE-EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET------TTTEEEEEECTTSSSCEEEEEE--
T ss_pred EEEeccccccc-eeecccCcccCccccccCCceEEEEECCCCCEEEEEEC------CCCeEEEEEecCCCcceeEEec--
Confidence 88898877322 22221 10 02223322222223555665443 12578889976543222 1222
Q ss_pred CCCCCCCcceEEEECCcE-EEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEE
Q 048754 458 WSPPSRLGHSLSVYGRTK-VLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVS 536 (625)
Q Consensus 458 ~~p~~r~~~~~~~~~~~~-l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~ 536 (625)
..+.-+..+.-.+++ +|+.+.. .+.+.++|+.+ .+-...-.. +..|.+..+.. +.
T Consensus 322 ---~~~~~~~~~~spdg~~l~va~~~---------~~~v~v~D~~t--g~l~~~i~~---------g~~ph~g~g~~-~~ 377 (543)
T 1nir_A 322 ---AAPFLHDGGWDSSHRYFMTAANN---------SNKVAVIDSKD--RRLSALVDV---------GKTPHPGRGAN-FV 377 (543)
T ss_dssp ---CCSSCCCEEECTTSCEEEEEEGG---------GTEEEEEETTT--TEEEEEEEC---------SSSBCCTTCEE-EE
T ss_pred ---cCcCccCceECCCCCEEEEEecC---------CCeEEEEECCC--CeEEEeecc---------CCCCCCCCCcc-cC
Confidence 123334454544444 5544322 36788899884 232222111 12233222222 23
Q ss_pred ecC-CEEEEEecCCCCCCCCCcEEEEeCCCC---CCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcC-cCCCCCccCc
Q 048754 537 MPC-GRIIIFGGSIAGLHSPSQLFLLDPSEE---KPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGG-HTGEEWVLNE 611 (625)
Q Consensus 537 ~~~-~~l~v~GG~~~~~~~~~~v~~~d~~~~---~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG-~~~~~~~~~d 611 (625)
..+ +.+|+.+... .+.|-++|+... ...|+.+....... .....+.+.++++.+..+. .+++...-+.
T Consensus 378 ~p~~g~~~~s~~~~-----d~~V~v~d~~~~~~~~~~~~~v~~l~~~g--~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 378 HPKYGPVWSTSHLG-----DGSISLIGTDPKNHPQYAWKKVAELQGQG--GGSLFIKTHPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp ETTTEEEEEEEBSS-----SSEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred CCCCccEEEeccCC-----CceEEEEEeCCCCCchhcCeEEEEEEcCC--CCceEEEcCCCCCcEEEecCCCCCcccCce
Confidence 333 6788876532 346788887311 12387665311111 1112233334444444443 2332223467
Q ss_pred eEEEEccCCC
Q 048754 612 LHELCLASKQ 621 (625)
Q Consensus 612 ~~~~~~~~~~ 621 (625)
|.++|+.+.+
T Consensus 451 v~v~d~~~~~ 460 (543)
T 1nir_A 451 VAVFDLKNLD 460 (543)
T ss_dssp EEEEETTCTT
T ss_pred EEEEECCCCC
Confidence 7888876654
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=91.62 E-value=17 Score=39.22 Aligned_cols=194 Identities=13% Similarity=0.061 Sum_probs=93.4
Q ss_pred CeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCC-----------CccccEEEEECCCCCCEEEE
Q 048754 333 DTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQ-----------GLLNDVFVLDLDAKQPTWIE 400 (625)
Q Consensus 333 ~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~-----------~~~~~~~~~d~~t~~~~W~~ 400 (625)
.++++|+.+ .+........ ... .+.+.. +++.||+.. .... .....++++++.+.+..-..
T Consensus 152 ~i~v~d~~t--g~~~~~~~~~---~~~-~~~~wspDg~~l~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~ 224 (710)
T 2xdw_A 152 TIKFMKVDG--AKELPDVLER---VKF-SCMAWTHDGKGMFYNA-YPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL 224 (710)
T ss_dssp EEEEEETTT--TEEEEEEEEE---ECS-CCEEECTTSSEEEEEE-CCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE
T ss_pred EEEEEECCC--CCCCcccccC---ccc-ceEEEEeCCCEEEEEE-ECCccccccccccccCCCCEEEEEECCCCcccceE
Confidence 589999987 4555432111 111 122222 344455443 3221 23456899998876311112
Q ss_pred cCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCC------CCCceEEcCCCCCCCCCCcceEEEECC
Q 048754 401 VSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTT------DKPMWREIPTSWSPPSRLGHSLSVYGR 473 (625)
Q Consensus 401 ~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~------~~~~W~~~~~~~~p~~r~~~~~~~~~~ 473 (625)
+.... ..+......... +++.+++..... ....+.++++|+++ ....+..+... .... ......++
T Consensus 225 v~~~~-~~~~~~~~~~~SpDg~~l~~~~~~~--~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~--~~~~--~~~~s~dg 297 (710)
T 2xdw_A 225 CAEFP-DEPKWMGGAELSDDGRYVLLSIREG--CDPVNRLWYCDLQQESNGITGILKWVKLIDN--FEGE--YDYVTNEG 297 (710)
T ss_dssp EECCT-TCTTCEEEEEECTTSCEEEEEEECS--SSSCCEEEEEEGGGSSSSSCSSCCCEEEECS--SSSC--EEEEEEET
T ss_pred EeccC-CCCeEEEEEEEcCCCCEEEEEEEcc--CCCccEEEEEECcccccccCCccceEEeeCC--CCcE--EEEEeccC
Confidence 21110 112222223233 444444433211 11246899999865 32247776532 1111 12223344
Q ss_pred cEEEEEcCCcCCCCcccccCceEEEEcCCCC-CceeEeeeccccCcCCCCCCCCCCccceEEEEe-cCCEEEEEecCCCC
Q 048754 474 TKVLMFGGLAKSGHLRLRSGESYTIDLGDEE-PQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSM-PCGRIIIFGGSIAG 551 (625)
Q Consensus 474 ~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~-~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~ 551 (625)
+.||+.+..... ...++.+|+.+.. ..|+.+... ........+.. .++++++....+
T Consensus 298 ~~l~~~s~~~~~------~~~l~~~d~~~~~~~~~~~l~~~-------------~~~~~~~~~~~~~~~~lv~~~~~~-- 356 (710)
T 2xdw_A 298 TVFTFKTNRHSP------NYRLINIDFTDPEESKWKVLVPE-------------HEKDVLEWVACVRSNFLVLCYLHD-- 356 (710)
T ss_dssp TEEEEEECTTCT------TCEEEEEETTSCCGGGCEEEECC-------------CSSCEEEEEEEETTTEEEEEEEET--
T ss_pred CEEEEEECCCCC------CCEEEEEeCCCCCcccceeccCC-------------CCCCeEEEEEEEcCCEEEEEEEEC--
Confidence 488887654211 3678999987422 158877533 12111122223 367777765432
Q ss_pred CCCCCcEEEEeC
Q 048754 552 LHSPSQLFLLDP 563 (625)
Q Consensus 552 ~~~~~~v~~~d~ 563 (625)
....++++++
T Consensus 357 --g~~~l~~~~~ 366 (710)
T 2xdw_A 357 --VKNTLQLHDL 366 (710)
T ss_dssp --TEEEEEEEET
T ss_pred --CEEEEEEEEC
Confidence 1457899998
No 190
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=91.60 E-value=12 Score=37.57 Aligned_cols=66 Identities=18% Similarity=0.187 Sum_probs=34.7
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+. .+.++|+.+ .....+.... .......++....++.+++.|+.++ .+.++|+...
T Consensus 176 ~~~~l~s~s~D~------~v~iwd~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~dg-----~i~~wd~~~~ 241 (435)
T 4e54_B 176 NTNQFYASSMEG------TTRLQDFKG--NILRVFASSD-TINIWFCSLDVSASSRMVVTGDNVG-----NVILLNMDGK 241 (435)
T ss_dssp CTTEEEEECSSS------CEEEEETTS--CEEEEEECCS-SCSCCCCCEEEETTTTEEEEECSSS-----BEEEEESSSC
T ss_pred CCCEEEEEeCCC------EEEEeeccC--CceeEEeccC-CCCccEEEEEECCCCCEEEEEeCCC-----cEeeeccCcc
Confidence 345666666533 278889876 3444332121 1111222333333455777777543 5888898654
No 191
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=91.54 E-value=3 Score=40.75 Aligned_cols=153 Identities=11% Similarity=0.034 Sum_probs=63.7
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccc-eeEEEEcCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWG-HTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.+++.|+.+. .+.+||+.+ ..|..+. ........ .++....++..++.|+.++ .+.+||+.+
T Consensus 22 ~g~~l~~~~~d~------~i~iw~~~~--~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~s~d~-----~v~vwd~~~ 86 (377)
T 3dwl_C 22 QRTEFVTTTATN------QVELYEQDG--NGWKHAR--TFSDHDKIVTCVDWAPKSNRIVTCSQDR-----NAYVYEKRP 86 (377)
T ss_dssp SSSEEECCCSSS------CBCEEEEET--TEEEECC--CBCCCSSCEEEEEECTTTCCEEEEETTS-----SEEEC----
T ss_pred CCCEEEEecCCC------EEEEEEccC--CceEEEE--EEecCCceEEEEEEeCCCCEEEEEeCCC-----eEEEEEcCC
Confidence 445666665432 377888876 4666552 22111112 2222233445666776443 588888877
Q ss_pred CCCE-EEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC
Q 048754 394 KQPT-WIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG 472 (625)
Q Consensus 394 ~~~~-W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 472 (625)
. . |....... .....-.+.+...++..++.|+.+ ..+.+||+.+... |..+..-..+....-.++....
T Consensus 87 ~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~-~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 87 D--GTWKQTLVLL-RLNRAATFVRWSPNEDKFAVGSGA------RVISVCYFEQEND-WWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp ----CCCCEEECC-CCSSCEEEEECCTTSSCCEEEESS------SCEEECCC------CCCCEEECSSCCSCEEEEEECT
T ss_pred C--CceeeeeEec-ccCCceEEEEECCCCCEEEEEecC------CeEEEEEECCccc-ceeeeEeecccCCCeEEEEEcC
Confidence 6 3 32221110 111111122222334556666532 2567778755431 2111100011111122333334
Q ss_pred CcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 473 RTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 473 ~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
++.+++.|+.+ ..+.+||+.
T Consensus 157 ~~~~l~~~~~d---------~~i~iwd~~ 176 (377)
T 3dwl_C 157 NNVLLAAGCAD---------RKAYVLSAY 176 (377)
T ss_dssp TSSEEEEEESS---------SCEEEEEEC
T ss_pred CCCEEEEEeCC---------CEEEEEEEE
Confidence 44677777653 467778875
No 192
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.25 E-value=18 Score=39.48 Aligned_cols=180 Identities=12% Similarity=0.082 Sum_probs=83.6
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEE-EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWI-EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
++..+++|+.+ ..+.+||..++ ... .+... ...-.+.+...++..++.|+.+ ..+.+||+.+
T Consensus 66 ~~~~l~~~~~d-----g~i~vw~~~~~--~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~ 128 (814)
T 3mkq_A 66 RKNWIIVGSDD-----FRIRVFNYNTG--EKVVDFEAH----PDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWEN 128 (814)
T ss_dssp GGTEEEEEETT-----SEEEEEETTTC--CEEEEEECC----SSCEEEEEECSSSSEEEEEETT------SEEEEEEGGG
T ss_pred CCCEEEEEeCC-----CeEEEEECCCC--cEEEEEecC----CCCEEEEEEeCCCCEEEEEcCC------CEEEEEECCC
Confidence 33466666643 36889999877 433 22211 1111122222344455555532 3578888765
Q ss_pred CCCceEE-cCCCCCCCCCCcceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCC
Q 048754 447 DKPMWRE-IPTSWSPPSRLGHSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAV 524 (625)
Q Consensus 447 ~~~~W~~-~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~ 524 (625)
.. .... +.. ...+ -.+++... ++.+++.|+.+ ..+.+||+.+....+....
T Consensus 129 ~~-~~~~~~~~--~~~~--v~~~~~~p~~~~~l~~~~~d---------g~v~vwd~~~~~~~~~~~~------------- 181 (814)
T 3mkq_A 129 NW-ALEQTFEG--HEHF--VMCVAFNPKDPSTFASGCLD---------RTVKVWSLGQSTPNFTLTT------------- 181 (814)
T ss_dssp TS-EEEEEEEC--CSSC--EEEEEEETTEEEEEEEEETT---------SEEEEEETTCSSCSEEEEC-------------
T ss_pred Cc-eEEEEEcC--CCCc--EEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCcceeEEec-------------
Confidence 42 1211 111 1111 12333333 44677776653 5788899874322222211
Q ss_pred CCCCccceEEEEec--CCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCc
Q 048754 525 VPPPRLDHVAVSMP--CGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGH 602 (625)
Q Consensus 525 ~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~ 602 (625)
............. ++.+++.|+. ...+.+||+. +..-...-. + + ...-.++...+++.+++.||.
T Consensus 182 -~~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~~~d~~--~~~~~~~~~-~--~-~~~v~~~~~~~~~~~l~~~~~ 248 (814)
T 3mkq_A 182 -GQERGVNYVDYYPLPDKPYMITASD------DLTIKIWDYQ--TKSCVATLE-G--H-MSNVSFAVFHPTLPIIISGSE 248 (814)
T ss_dssp -CCTTCCCEEEECCSTTCCEEEEECT------TSEEEEEETT--TTEEEEEEE-C--C-SSCEEEEEECSSSSEEEEEET
T ss_pred -CCCCCEEEEEEEECCCCCEEEEEeC------CCEEEEEECC--CCcEEEEEc-C--C-CCCEEEEEEcCCCCEEEEEeC
Confidence 1111112222232 5667777775 3478889983 332211110 1 1 111123334445667777776
Q ss_pred CC
Q 048754 603 TG 604 (625)
Q Consensus 603 ~~ 604 (625)
++
T Consensus 249 dg 250 (814)
T 3mkq_A 249 DG 250 (814)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 193
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=91.18 E-value=0.048 Score=45.62 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=28.6
Q ss_pred CCCCCCcccccccccccCc-hhHHHHhhhcccCch
Q 048754 198 GGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPR 231 (625)
Q Consensus 198 ~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~ 231 (625)
.+..++++|+++++++|++ ++++|..+..+++++
T Consensus 46 ~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~ 80 (149)
T 3d72_A 46 KDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPD 80 (149)
T ss_dssp TTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTT
T ss_pred CCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCcc
Confidence 4667779999999999999 888988887777765
No 194
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=91.06 E-value=13 Score=36.67 Aligned_cols=155 Identities=14% Similarity=0.056 Sum_probs=71.6
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEE---EEcCCCCCCCCCccceEEEE-cC-CEEEEEcCcCCCCceeceEEEE
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTW---IEVSGGAPPLPRSWHSSCII-EG-SKLVVSGGCTDAGVLLSDTYLL 442 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W---~~~~~~~~p~~r~~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~ 442 (625)
++.+++.|+.+ ..+.+||+.++.... ..+...... ... -..+.+ .+ ..+++.|+.+ ..+.++
T Consensus 93 ~~~~l~s~s~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~h-~~~-v~~~~~~p~~~~~l~s~~~d------g~i~iw 159 (402)
T 2aq5_A 93 NDNVIASGSED-----CTVMVWEIPDGGLVLPLREPVITLEGH-TKR-VGIVAWHPTAQNVLLSAGCD------NVILVW 159 (402)
T ss_dssp CTTEEEEEETT-----SEEEEEECCTTCCSSCBCSCSEEEECC-SSC-EEEEEECSSBTTEEEEEETT------SCEEEE
T ss_pred CCCEEEEEeCC-----CeEEEEEccCCCCccccCCceEEecCC-CCe-EEEEEECcCCCCEEEEEcCC------CEEEEE
Confidence 44577777654 358888887762110 000000000 111 112223 22 2466666643 358889
Q ss_pred ecCCCCCceE-EcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCC
Q 048754 443 DLTTDKPMWR-EIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQ 521 (625)
Q Consensus 443 d~~~~~~~W~-~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~ 521 (625)
|+.+.. .. .+...... ..-.++....++.+++.|+.+ ..+.+||+.+. + .+....
T Consensus 160 d~~~~~--~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~--~--~~~~~~------- 215 (402)
T 2aq5_A 160 DVGTGA--AVLTLGPDVHP--DTIYSVDWSRDGALICTSCRD---------KRVRVIEPRKG--T--VVAEKD------- 215 (402)
T ss_dssp ETTTTE--EEEEECTTTCC--SCEEEEEECTTSSCEEEEETT---------SEEEEEETTTT--E--EEEEEE-------
T ss_pred ECCCCC--ccEEEecCCCC--CceEEEEECCCCCEEEEEecC---------CcEEEEeCCCC--c--eeeeec-------
Confidence 986644 22 22100011 111233333344666666643 57889998732 2 222210
Q ss_pred CCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 522 SAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 522 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
..........+....++++++.|... .....+.+||+.
T Consensus 216 --~~~~~~~~~~~~~~~~~~~l~~g~~~---~~d~~i~iwd~~ 253 (402)
T 2aq5_A 216 --RPHEGTRPVHAVFVSEGKILTTGFSR---MSERQVALWDTK 253 (402)
T ss_dssp --CSSCSSSCCEEEECSTTEEEEEEECT---TCCEEEEEEETT
T ss_pred --cCCCCCcceEEEEcCCCcEEEEeccC---CCCceEEEEcCc
Confidence 00111112233444477888777321 124578899984
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=90.98 E-value=9.9 Score=35.30 Aligned_cols=218 Identities=7% Similarity=-0.088 Sum_probs=103.7
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.||+.... .+.+.+||... +...+..+. ....-++++...++.+|+.... .+.+++||+. +
T Consensus 30 ~g~l~v~~~~------~~~v~~~~~~~---~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~-----~~~v~~~d~~-g 92 (300)
T 2qc5_A 30 DGKVWFTQHK------ANKISSLDQSG---RIKEFEVPT--PDAKVMCLIVSSLGDIWFTENG-----ANKIGKLSKK-G 92 (300)
T ss_dssp TSCEEEEETT------TTEEEEECTTS---CEEEEECSS--TTCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-S
T ss_pred CCCEEEEcCC------CCeEEEECCCC---ceEEEECCC--CCCcceeEEECCCCCEEEEecC-----CCeEEEECCC-C
Confidence 4678886532 12378888762 444432111 1112233343345568887532 1358899987 5
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
++..+... .....-+..+...++.+|+.... ...++.||++ .. ...+... .....-++++...++
T Consensus 93 --~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~--~~~~~~~--~~~~~~~~i~~d~~g 157 (300)
T 2qc5_A 93 --GFTEYPLP--QPDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GT--IYEYDLP--NKGSYPAFITLGSDN 157 (300)
T ss_dssp --CEEEEECS--STTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SC--EEEEECS--STTCCEEEEEECTTS
T ss_pred --CeEEecCC--CCCCCCccceECCCCCEEEEccC------CCeEEEECCC-CC--EEEccCC--CCCCCceeEEECCCC
Confidence 45544321 11122233333335578876431 1368888875 43 4433211 011122344444445
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS 554 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~ 554 (625)
++|+.... ...+++||+. . +...+... ...........-.++.||+....
T Consensus 158 ~l~v~~~~---------~~~i~~~~~~-g--~~~~~~~~------------~~~~~~~~i~~d~~g~l~v~~~~------ 207 (300)
T 2qc5_A 158 ALWFTENQ---------NNSIGRITNT-G--KLEEYPLP------------TNAAAPVGITSGNDGALWFVEIM------ 207 (300)
T ss_dssp SEEEEETT---------TTEEEEECTT-C--CEEEEECS------------STTCCEEEEEECTTSSEEEEETT------
T ss_pred CEEEEecC---------CCeEEEECCC-C--cEEEeeCC------------CCCCCcceEEECCCCCEEEEccC------
Confidence 78876432 2568888874 2 34433211 01111122333336678886432
Q ss_pred CCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEc
Q 048754 555 PSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLG 600 (625)
Q Consensus 555 ~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~G 600 (625)
.+.+++||+ +..+........ ...-.++++..++.||+..
T Consensus 208 ~~~i~~~~~---~g~~~~~~~~~~---~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 208 GNKIGRITT---TGEISEYDIPTP---NARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp TTEEEEECT---TCCEEEEECSST---TCCEEEEEECSTTCEEEEE
T ss_pred CCEEEEEcC---CCcEEEEECCCC---CCCceEEEECCCCCEEEec
Confidence 346899997 445555432111 1111233333455666654
No 196
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=90.81 E-value=10 Score=35.15 Aligned_cols=238 Identities=6% Similarity=0.044 Sum_probs=113.4
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCC--ccceeEEEE-cCCEEEEEccCCCCCccccEEEEEC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPG--RWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDL 391 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~--r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~ 391 (625)
++.+|+..... ..+.+||... .....+........ ..-..++.. .++++|+.+... ...+.+||.
T Consensus 40 ~g~l~v~~~~~------~~i~~~d~~g--~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~----~~~i~~~d~ 107 (286)
T 1q7f_A 40 QNDIIVADTNN------HRIQIFDKEG--RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP----THQIQIYNQ 107 (286)
T ss_dssp TCCEEEEEGGG------TEEEEECTTS--CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG----GCEEEEECT
T ss_pred CCCEEEEECCC------CEEEEECCCC--cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC----CCEEEEECC
Confidence 45788876432 2388888764 22233321111111 111233332 466888886421 245888995
Q ss_pred CCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE
Q 048754 392 DAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY 471 (625)
Q Consensus 392 ~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 471 (625)
... ....+... ....-+..+...++.+|+.... .+.+++||++... ...+... .....-.++++-
T Consensus 108 ~g~--~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~--~~~~~~~--~~~~~p~~i~~~ 172 (286)
T 1q7f_A 108 YGQ--FVRKFGAT---ILQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNV--LHKFGCS--KHLEFPNGVVVN 172 (286)
T ss_dssp TSC--EEEEECTT---TCSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCE--EEEEECT--TTCSSEEEEEEC
T ss_pred CCc--EEEEecCc---cCCCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCE--EEEeCCC--CccCCcEEEEEC
Confidence 543 33334321 1111133333344578886532 1468889864322 3333211 111112344444
Q ss_pred CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC
Q 048754 472 GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG 551 (625)
Q Consensus 472 ~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 551 (625)
.++.+|+.... ...+++||++ ......+... +. .......+.-.+++|||....+
T Consensus 173 ~~g~l~v~~~~---------~~~i~~~~~~--g~~~~~~~~~---------g~---~~~p~~i~~d~~G~l~v~~~~~-- 227 (286)
T 1q7f_A 173 DKQEIFISDNR---------AHCVKVFNYE--GQYLRQIGGE---------GI---TNYPIGVGINSNGEILIADNHN-- 227 (286)
T ss_dssp SSSEEEEEEGG---------GTEEEEEETT--CCEEEEESCT---------TT---SCSEEEEEECTTCCEEEEECSS--
T ss_pred CCCCEEEEECC---------CCEEEEEcCC--CCEEEEEccC---------Cc---cCCCcEEEECCCCCEEEEeCCC--
Confidence 45688887543 2678899986 3222222211 00 0111233333467888886431
Q ss_pred CCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccC
Q 048754 552 LHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 552 ~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
...|.+||+ ....-..+....... .-.++++..++.+|+.. . + +.|.+|++..
T Consensus 228 ---~~~i~~~~~--~g~~~~~~~~~~~~~---~~~~i~~~~~g~l~vs~-~--~----~~v~v~~~~~ 280 (286)
T 1q7f_A 228 ---NFNLTIFTQ--DGQLISALESKVKHA---QCFDVALMDDGSVVLAS-K--D----YRLYIYRYVQ 280 (286)
T ss_dssp ---SCEEEEECT--TSCEEEEEEESSCCS---CEEEEEEETTTEEEEEE-T--T----TEEEEEECSC
T ss_pred ---CEEEEEECC--CCCEEEEEcccCCCC---cceeEEECCCCcEEEEC-C--C----CeEEEEEccc
Confidence 127899997 332222332211111 12345566677888874 2 1 4566666644
No 197
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=90.81 E-value=11 Score=35.48 Aligned_cols=225 Identities=14% Similarity=0.111 Sum_probs=101.9
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccc-eeEEEEcCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWG-HTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.+++.|+.+. .+.++++.+ ......- .. .... .+++...++..++.|+.+ ..+.+||+.+
T Consensus 34 ~~~~l~s~~~dg------~i~iw~~~~--~~~~~~~-~~---h~~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~ 96 (312)
T 4ery_A 34 NGEWLASSSADK------LIKIWGAYD--GKFEKTI-SG---HKLGISDVAWSSDSNLLVSASDD-----KTLKIWDVSS 96 (312)
T ss_dssp TSSEEEEEETTS------CEEEEETTT--CCEEEEE-CC---CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTT
T ss_pred CCCEEEEeeCCC------eEEEEeCCC--cccchhh-cc---CCCceEEEEEcCCCCEEEEECCC-----CEEEEEECCC
Confidence 344556666432 277888765 3443321 11 1111 222223344567777654 3688899887
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECC
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGR 473 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 473 (625)
.+. -..+... .... .+.....++.+++.|+.+ ..+.+||+.+... -..+.. ...+ -.++....+
T Consensus 97 ~~~-~~~~~~~---~~~v-~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~-~~~~~~--~~~~--v~~~~~~~~ 160 (312)
T 4ery_A 97 GKC-LKTLKGH---SNYV-FCCNFNPQSNLIVSGSFD------ESVRIWDVKTGKC-LKTLPA--HSDP--VSAVHFNRD 160 (312)
T ss_dssp CCE-EEEEECC---SSCE-EEEEECSSSSEEEEEETT------SCEEEEETTTCCE-EEEECC--CSSC--EEEEEECTT
T ss_pred CcE-EEEEcCC---CCCE-EEEEEcCCCCEEEEEeCC------CcEEEEECCCCEE-EEEecC--CCCc--EEEEEEcCC
Confidence 721 1222211 1111 122222344566666643 3578889765431 112221 1111 112223334
Q ss_pred cEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCC
Q 048754 474 TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLH 553 (625)
Q Consensus 474 ~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 553 (625)
+.+++.|+.+ ..+.+||+.+. + .+.... ....+. ........+++.++.|+.
T Consensus 161 ~~~l~~~~~d---------~~i~~wd~~~~--~--~~~~~~---------~~~~~~-~~~~~~~~~~~~l~~~~~----- 212 (312)
T 4ery_A 161 GSLIVSSSYD---------GLCRIWDTASG--Q--CLKTLI---------DDDNPP-VSFVKFSPNGKYILAATL----- 212 (312)
T ss_dssp SSEEEEEETT---------SCEEEEETTTC--C--EEEEEC---------CSSCCC-EEEEEECTTSSEEEEEET-----
T ss_pred CCEEEEEeCC---------CcEEEEECCCC--c--eeeEEe---------ccCCCc-eEEEEECCCCCEEEEEcC-----
Confidence 4677777653 56888998732 2 222210 001111 112223335667777765
Q ss_pred CCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 554 SPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 554 ~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
...+.+||+ .+..-...- .+.......-.......++.+++.||.++
T Consensus 213 -d~~i~iwd~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 259 (312)
T 4ery_A 213 -DNTLKLWDY--SKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDN 259 (312)
T ss_dssp -TTEEEEEET--TTTEEEEEE-CSSCCSSSCCCEEEECSSSCEEEECCTTS
T ss_pred -CCeEEEEEC--CCCcEEEEE-EecCCceEEEEEEEEeCCCcEEEEECCCC
Confidence 347889998 333322211 11111111112222334567777887654
No 198
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=90.61 E-value=3.7 Score=40.04 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=13.7
Q ss_pred CCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 539 CGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 539 ~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
++.+++.|+. ...|.+||+.
T Consensus 238 ~~~~la~g~~------d~~i~~wd~~ 257 (357)
T 4g56_B 238 KDDTFACGDE------TGNVSLVNIK 257 (357)
T ss_dssp STTEEEEEES------SSCEEEEESS
T ss_pred ccceEEEeec------ccceeEEECC
Confidence 3567777775 3468888883
No 199
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=90.60 E-value=21 Score=38.47 Aligned_cols=196 Identities=12% Similarity=0.037 Sum_probs=93.9
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCC----------CceeceEEEEecCCCCCceE
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDA----------GVLLSDTYLLDLTTDKPMWR 452 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~----------~~~~~~~~~~d~~~~~~~W~ 452 (625)
..++++|+.++ ....... +.... ...+.. +++.||+. ..... ......++.+++.+....-.
T Consensus 151 ~~i~v~d~~tg--~~~~~~~---~~~~~-~~~~wspDg~~l~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~ 223 (710)
T 2xdw_A 151 VTIKFMKVDGA--KELPDVL---ERVKF-SCMAWTHDGKGMFYN-AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI 223 (710)
T ss_dssp EEEEEEETTTT--EEEEEEE---EEECS-CCEEECTTSSEEEEE-ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE
T ss_pred EEEEEEECCCC--CCCcccc---cCccc-ceEEEEeCCCEEEEE-EECCccccccccccccCCCCEEEEEECCCCcccce
Confidence 47999999988 6654321 11111 122233 44444443 32221 01235688889866542112
Q ss_pred EcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC------CCCceeEeeeccccCcCCCCCCCC
Q 048754 453 EIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD------EEPQWKQLECNAFTGVGSQSAVVP 526 (625)
Q Consensus 453 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~------~~~~W~~~~~~~~~~~~~~~~~~p 526 (625)
.+... ...+....+...-.+++.+++........ ..++|++|+.+ ....+..+... .
T Consensus 224 ~v~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~----~~~l~~~d~~~~~~~~~~~~~~~~l~~~------------~ 286 (710)
T 2xdw_A 224 LCAEF-PDEPKWMGGAELSDDGRYVLLSIREGCDP----VNRLWYCDLQQESNGITGILKWVKLIDN------------F 286 (710)
T ss_dssp EEECC-TTCTTCEEEEEECTTSCEEEEEEECSSSS----CCEEEEEEGGGSSSSSCSSCCCEEEECS------------S
T ss_pred EEecc-CCCCeEEEEEEEcCCCCEEEEEEEccCCC----ccEEEEEECcccccccCCccceEEeeCC------------C
Confidence 22111 11122223444444444444433221111 36899999873 22257666532 1
Q ss_pred CCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCC---CeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcC
Q 048754 527 PPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKP---SWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHT 603 (625)
Q Consensus 527 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~---~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~ 603 (625)
.. ....+...++.|++.+... .....|+.+|+. +. .|..+.... +. ..-.+....+++.+++....+
T Consensus 287 ~~--~~~~~s~dg~~l~~~s~~~---~~~~~l~~~d~~--~~~~~~~~~l~~~~--~~-~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 287 EG--EYDYVTNEGTVFTFKTNRH---SPNYRLINIDFT--DPEESKWKVLVPEH--EK-DVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp SS--CEEEEEEETTEEEEEECTT---CTTCEEEEEETT--SCCGGGCEEEECCC--SS-CEEEEEEEETTTEEEEEEEET
T ss_pred Cc--EEEEEeccCCEEEEEECCC---CCCCEEEEEeCC--CCCcccceeccCCC--CC-CeEEEEEEEcCCEEEEEEEEC
Confidence 11 1223334367788876532 124689999984 33 588875321 11 111223334456777666544
Q ss_pred CCCCccCceEEEEc
Q 048754 604 GEEWVLNELHELCL 617 (625)
Q Consensus 604 ~~~~~~~d~~~~~~ 617 (625)
+ ...+|++++
T Consensus 357 g----~~~l~~~~~ 366 (710)
T 2xdw_A 357 V----KNTLQLHDL 366 (710)
T ss_dssp T----EEEEEEEET
T ss_pred C----EEEEEEEEC
Confidence 3 244566655
No 200
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=90.53 E-value=0.084 Score=42.23 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=35.2
Q ss_pred cccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhH
Q 048754 193 AQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASI 236 (625)
Q Consensus 193 ~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~ 236 (625)
..++|.+..++++|+++++++|++ ++++|..+..++++++...+
T Consensus 12 i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~ 56 (126)
T 3mjq_A 12 ILIINREGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEG 56 (126)
T ss_dssp EEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHH
T ss_pred EEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHH
Confidence 334577777789999999999999 88888888888887765543
No 201
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=90.52 E-value=8 Score=37.78 Aligned_cols=200 Identities=9% Similarity=0.034 Sum_probs=90.8
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEc--CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIE--GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPP 461 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~ 461 (625)
..++++|+.++ ....+... .....+ ..... ++.+++... .........++.+|+++.. +..+... .+
T Consensus 168 ~~l~~~d~~~g--~~~~~~~~---~~~~~~-~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~--~~~l~~~-~~- 236 (396)
T 3c5m_A 168 CRLIKVDIETG--ELEVIHQD---TAWLGH-PIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSN--VRKIKEH-AE- 236 (396)
T ss_dssp EEEEEEETTTC--CEEEEEEE---SSCEEE-EEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCC--CEESSCC-CT-
T ss_pred ceEEEEECCCC--cEEeeccC---Cccccc-ceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCc--eeEeecc-CC-
Confidence 47899999887 55555421 111222 22222 333444332 1111122578999976544 6666531 11
Q ss_pred CCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEec-CC
Q 048754 462 SRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMP-CG 540 (625)
Q Consensus 462 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~ 540 (625)
...........+++.+++........ ...++++|+. +.+...+... +. . ...... ++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~----~~~l~~~d~~--~g~~~~l~~~------------~~--~--~~~~s~~dg 294 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQT----DRVIYKANPE--TLENEEVMVM------------PP--C--SHLMSNFDG 294 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTC----CEEEEEECTT--TCCEEEEEEC------------CS--E--EEEEECSSS
T ss_pred CccccceEECCCCCEEEEEecCCCCc----cceEEEEECC--CCCeEEeeeC------------CC--C--CCCccCCCC
Confidence 11111222333334333332221110 1239999987 3355555433 11 1 123333 56
Q ss_pred EEEEEecCCC----------CCCCCCcEEEEeCCCCCCCeEEEcCCCCCC------CCCCcceEEEECCcEEEEEcCcCC
Q 048754 541 RIIIFGGSIA----------GLHSPSQLFLLDPSEEKPSWRILNVPGQPP------KFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 541 ~l~v~GG~~~----------~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p------~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
+++++.+... .......++.+|+ .+.....+....... ............+++.+++.....
T Consensus 295 ~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~ 372 (396)
T 3c5m_A 295 SLMVGDGCDAPVDVADADSYNIENDPFLYVLNT--KAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE 372 (396)
T ss_dssp SEEEEEECCC----------CCCCCCEEEEEET--TTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT
T ss_pred ceEEEecCCcceeeccccccccCCCCcEEEEec--ccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC
Confidence 6666654321 0112468999999 455555554211100 000011223344555555554332
Q ss_pred CCCccCceEEEEccCCC
Q 048754 605 EEWVLNELHELCLASKQ 621 (625)
Q Consensus 605 ~~~~~~d~~~~~~~~~~ 621 (625)
. ...+|.+++.+..
T Consensus 373 ~---~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 373 G---VPAIYIADVPESY 386 (396)
T ss_dssp S---SCEEEEEECCTTC
T ss_pred C---CceEEEEEEcccc
Confidence 2 2568999887654
No 202
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=90.47 E-value=0.096 Score=41.34 Aligned_cols=45 Identities=11% Similarity=0.037 Sum_probs=33.5
Q ss_pred cccCCCCCCcccccccccccCc-hhHHHH--hhhcccCchhhhhHHhH
Q 048754 195 YFSGGHSPLSQHQDICGILQLS-DEVLAH--NILSRLTPRDVASIGSV 239 (625)
Q Consensus 195 ~~~~~~~~~~~n~~~~~~~g~~-~e~~~~--~~~~~~~~~~~~~~~~~ 239 (625)
.++.+...+++|+++++++|++ +++.+. .+..+++|++...+...
T Consensus 19 ~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~ 66 (118)
T 3icy_A 19 HLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNA 66 (118)
T ss_dssp EECTTSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHH
T ss_pred EEEcCCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHH
Confidence 3366677779999999999999 665543 34678999987766443
No 203
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=90.43 E-value=0.13 Score=40.59 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=33.4
Q ss_pred cccCC-CCCCcccccccccccCc-hhHHHHh--hhcccCchhhhhHHh
Q 048754 195 YFSGG-HSPLSQHQDICGILQLS-DEVLAHN--ILSRLTPRDVASIGS 238 (625)
Q Consensus 195 ~~~~~-~~~~~~n~~~~~~~g~~-~e~~~~~--~~~~~~~~~~~~~~~ 238 (625)
+++.+ ..++++|+++++++|++ ++++|.. +...++|++...+..
T Consensus 26 ~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (125)
T 3eeh_A 26 EFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKD 73 (125)
T ss_dssp EEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHH
T ss_pred EEEcCCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHH
Confidence 44666 67779999999999999 6777655 577888887665533
No 204
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=90.42 E-value=14 Score=36.21 Aligned_cols=63 Identities=10% Similarity=0.161 Sum_probs=33.2
Q ss_pred CCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCc-EEEEEcCcCCCCCccCceEEEEc
Q 048754 539 CGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGT-RVLVLGGHTGEEWVLNELHELCL 617 (625)
Q Consensus 539 ~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~-~i~i~GG~~~~~~~~~d~~~~~~ 617 (625)
++.+++.|+. ...+.+||+. +.+-...-. + ....-.++...+++ .+++.|+.++ .+.++++
T Consensus 274 ~~~~l~s~~~------dg~v~~wd~~--~~~~~~~~~-~---~~~~v~~~~~s~~~~~~l~s~~~d~------~i~iw~~ 335 (416)
T 2pm9_A 274 DEHLLLSSGR------DNTVLLWNPE--SAEQLSQFP-A---RGNWCFKTKFAPEAPDLFACASFDN------KIEVQTL 335 (416)
T ss_dssp CSSCEEEEES------SSEEEEECSS--SCCEEEEEE-C---SSSCCCCEEECTTCTTEEEECCSSS------EEEEEES
T ss_pred CCCeEEEEeC------CCCEEEeeCC--CCccceeec-C---CCCceEEEEECCCCCCEEEEEecCC------cEEEEEc
Confidence 5678888775 3468899983 333221111 1 11112234444555 6888888654 2445555
Q ss_pred cC
Q 048754 618 AS 619 (625)
Q Consensus 618 ~~ 619 (625)
.+
T Consensus 336 ~~ 337 (416)
T 2pm9_A 336 QN 337 (416)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 205
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=90.37 E-value=0.062 Score=42.90 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=34.2
Q ss_pred cccCCCCCCcccccccccccCc-hhHHH--HhhhcccCchhhhhHH
Q 048754 195 YFSGGHSPLSQHQDICGILQLS-DEVLA--HNILSRLTPRDVASIG 237 (625)
Q Consensus 195 ~~~~~~~~~~~n~~~~~~~g~~-~e~~~--~~~~~~~~~~~~~~~~ 237 (625)
.++.+..++++|+++++++|++ +++.| ..+...++|++...+.
T Consensus 22 ~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~ 67 (125)
T 3nja_A 22 VLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVR 67 (125)
T ss_dssp EEETTTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHH
T ss_pred EEEcCCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHH
Confidence 4477777889999999999998 66666 5677888998876653
No 206
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=90.36 E-value=16 Score=36.69 Aligned_cols=100 Identities=11% Similarity=0.040 Sum_probs=51.6
Q ss_pred EEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 422 KLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 422 ~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
.+++.|+.+ ..+.+||+.+..... .+.. .. ..-.+++...++..++.|+.+ ..+.+||+.
T Consensus 281 ~~l~~~~~d------~~i~vwd~~~~~~~~-~~~~--~~--~~v~~~~~~~~~~~l~sg~~d---------g~i~vwd~~ 340 (464)
T 3v7d_B 281 NIVVSGSYD------NTLIVWDVAQMKCLY-ILSG--HT--DRIYSTIYDHERKRCISASMD---------TTIRIWDLE 340 (464)
T ss_dssp TEEEEEETT------SCEEEEETTTTEEEE-EECC--CS--SCEEEEEEETTTTEEEEEETT---------SCEEEEETT
T ss_pred CEEEEEeCC------CeEEEEECCCCcEEE-EecC--CC--CCEEEEEEcCCCCEEEEEeCC---------CcEEEEECC
Confidence 455556532 368888976543111 1111 11 111233344444566666653 578899987
Q ss_pred CCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 502 DEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 502 ~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
+ ...+... ........++.. ++..++.|+. ...+.+||+.
T Consensus 341 ~----~~~~~~~------------~~h~~~v~~~~~-~~~~l~s~s~------dg~v~vwd~~ 380 (464)
T 3v7d_B 341 N----GELMYTL------------QGHTALVGLLRL-SDKFLVSAAA------DGSIRGWDAN 380 (464)
T ss_dssp T----TEEEEEE------------CCCSSCEEEEEE-CSSEEEEEET------TSEEEEEETT
T ss_pred C----CcEEEEE------------eCCCCcEEEEEE-cCCEEEEEeC------CCcEEEEECC
Confidence 3 2233333 112222345555 4567777765 3468899984
No 207
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=90.35 E-value=10 Score=36.38 Aligned_cols=106 Identities=10% Similarity=0.010 Sum_probs=51.1
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEc-CCEEEEEccCCCCCccccEEEEECCCC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLN-GSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
+.+++.|+.+. .+.+||+.+.. .-..+. . ..... .++.... ++.+++.|+.++ .+.+||+.+.
T Consensus 85 ~~~l~~~~~dg------~i~v~d~~~~~-~~~~~~--~-~~~~i-~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~ 148 (366)
T 3k26_A 85 HPLLAVAGSRG------IIRIINPITMQ-CIKHYV--G-HGNAI-NELKFHPRDPNLLLSVSKDH-----ALRLWNIQTD 148 (366)
T ss_dssp CEEEEEEETTC------EEEEECTTTCC-EEEEEE--S-CCSCE-EEEEECSSCTTEEEEEETTS-----CEEEEETTTT
T ss_pred CCEEEEecCCC------EEEEEEchhce-Eeeeec--C-CCCcE-EEEEECCCCCCEEEEEeCCC-----eEEEEEeecC
Confidence 46777777533 38889987631 112221 1 11111 1222222 445777777543 5899999877
Q ss_pred CCEEEE-cCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 395 QPTWIE-VSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 395 ~~~W~~-~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
+... +.... .....-.+.+...++..++.|+.+ ..+.+||+.+
T Consensus 149 --~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~ 192 (366)
T 3k26_A 149 --TLVAIFGGVE-GHRDEVLSADYDLLGEKIMSCGMD------HSLKLWRINS 192 (366)
T ss_dssp --EEEEEECSTT-SCSSCEEEEEECTTSSEEEEEETT------SCEEEEESCS
T ss_pred --eEEEEecccc-cccCceeEEEECCCCCEEEEecCC------CCEEEEECCC
Confidence 4332 21110 111111222222344566666632 3577888754
No 208
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=90.34 E-value=12 Score=35.36 Aligned_cols=60 Identities=18% Similarity=0.143 Sum_probs=30.2
Q ss_pred EEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 422 KLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 422 ~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
.+++.||.+ ..+.+||+.+... ...+.. ...+ -.+++...++.+++.|+.+ ..+.+||+.
T Consensus 186 ~~~~s~~~d------~~i~i~d~~~~~~-~~~~~~--h~~~--v~~~~~s~~~~~l~s~s~D---------g~i~iwd~~ 245 (340)
T 4aow_A 186 PIIVSCGWD------KLVKVWNLANCKL-KTNHIG--HTGY--LNTVTVSPDGSLCASGGKD---------GQAMLWDLN 245 (340)
T ss_dssp CEEEEEETT------SCEEEEETTTTEE-EEEECC--CSSC--EEEEEECTTSSEEEEEETT---------CEEEEEETT
T ss_pred cEEEEEcCC------CEEEEEECCCCce-eeEecC--CCCc--EEEEEECCCCCEEEEEeCC---------CeEEEEEec
Confidence 455555532 2577888755431 111111 1111 1233333445677777753 567788887
No 209
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=90.23 E-value=22 Score=38.12 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=52.5
Q ss_pred eceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccc
Q 048754 436 LSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAF 515 (625)
Q Consensus 436 ~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~ 515 (625)
...++++|+++.. -..+... ......-..+....+++.++++..+.... ...++.+|+.+. .....+....
T Consensus 234 ~~~l~~~d~~~~~--~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~----~~~v~~~d~~~g-~~~~~~~~~~- 304 (706)
T 2z3z_A 234 HVTVGIYHLATGK--TVYLQTG-EPKEKFLTNLSWSPDENILYVAEVNRAQN----ECKVNAYDAETG-RFVRTLFVET- 304 (706)
T ss_dssp EEEEEEEETTTTE--EEECCCC-SCTTCEEEEEEECTTSSEEEEEEECTTSC----EEEEEEEETTTC-CEEEEEEEEE-
T ss_pred eeEEEEEECCCCc--eEeeccC-CCCceeEeeEEEECCCCEEEEEEeCCCCC----eeEEEEEECCCC-ceeeEEEEcc-
Confidence 3578999986654 4444321 11112222333334444444433322111 257889998832 1444443221
Q ss_pred cCcCCCCCCCCCCccceEEEEec--CCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEE
Q 048754 516 TGVGSQSAVVPPPRLDHVAVSMP--CGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRIL 573 (625)
Q Consensus 516 ~~~~~~~~~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v 573 (625)
...... ......... ++++++.+..+ ....+|.++. .......+
T Consensus 305 -------~~~~~~-~~~~~~~sp~~dg~~l~~~~~~----g~~~l~~~~~--~~~~~~~l 350 (706)
T 2z3z_A 305 -------DKHYVE-PLHPLTFLPGSNNQFIWQSRRD----GWNHLYLYDT--TGRLIRQV 350 (706)
T ss_dssp -------CSSCCC-CCSCCEECTTCSSEEEEEECTT----SSCEEEEEET--TSCEEEEC
T ss_pred -------CCCeEC-ccCCceeecCCCCEEEEEEccC----CccEEEEEEC--CCCEEEec
Confidence 000000 001223334 66766555432 2468899987 34555555
No 210
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=90.13 E-value=17 Score=36.54 Aligned_cols=151 Identities=10% Similarity=0.060 Sum_probs=69.0
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEecc--CCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLD--AANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~--~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
+..|++.|+.+. .+.+||+. +. ..-..+.....+. +. .+++...++..++.|+.+ ..++.+++.
T Consensus 114 ~~~l~~~~~~dg------~v~iwd~~~~~~-~~~~~~~~~~~~~-~v-~~~~~sp~~~~l~~~~~~-----g~v~~~~~~ 179 (450)
T 2vdu_B 114 ESRLIACADSDK------SLLVFDVDKTSK-NVLKLRKRFCFSK-RP-NAISIAEDDTTVIIADKF-----GDVYSIDIN 179 (450)
T ss_dssp SSEEEEEEGGGT------EEEEEEECSSSS-SCEEEEEEEECSS-CE-EEEEECTTSSEEEEEETT-----SEEEEEETT
T ss_pred CCEEEEEECCCC------eEEEEECcCCCC-ceeeeeecccCCC-Cc-eEEEEcCCCCEEEEEeCC-----CcEEEEecC
Confidence 345667777532 27788877 32 1222221101111 11 122222344456666542 358888886
Q ss_pred CCCCEEEE--cCCCCCCCCCccceEEEEcC---CEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcce
Q 048754 393 AKQPTWIE--VSGGAPPLPRSWHSSCIIEG---SKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHS 467 (625)
Q Consensus 393 t~~~~W~~--~~~~~~p~~r~~~~~~~~~~---~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~ 467 (625)
+. .... +....... ..-.+.+...+ +.+++.|+.+ ..+.+||+.+.......+.. ...+. .+
T Consensus 180 ~~--~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~--h~~~v--~~ 246 (450)
T 2vdu_B 180 SI--PEEKFTQEPILGHV-SMLTDVHLIKDSDGHQFIITSDRD------EHIKISHYPQCFIVDKWLFG--HKHFV--SS 246 (450)
T ss_dssp SC--CCSSCCCCCSEECS-SCEEEEEEEECTTSCEEEEEEETT------SCEEEEEESCTTCEEEECCC--CSSCE--EE
T ss_pred Cc--ccccccceeeeccc-CceEEEEEcCCCCCCcEEEEEcCC------CcEEEEECCCCceeeeeecC--CCCce--EE
Confidence 65 2111 00100011 11122233344 5677777643 36788887665422222211 11111 22
Q ss_pred EEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 468 LSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 468 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
++.. ++.+++.|+.+ ..+.+||+.+
T Consensus 247 ~~~s-d~~~l~s~~~d---------~~v~vwd~~~ 271 (450)
T 2vdu_B 247 ICCG-KDYLLLSAGGD---------DKIFAWDWKT 271 (450)
T ss_dssp EEEC-STTEEEEEESS---------SEEEEEETTT
T ss_pred EEEC-CCCEEEEEeCC---------CeEEEEECCC
Confidence 2233 44666676643 5788899874
No 211
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=90.12 E-value=0.046 Score=44.35 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=37.0
Q ss_pred hccccccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCc
Q 048754 185 CNQQYDQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTP 230 (625)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~ 230 (625)
+...+.....++|.+..++++|.++++++|++ ++++|.+++..+.|
T Consensus 27 ~ld~l~~GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p 73 (129)
T 1mzu_A 27 EFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAP 73 (129)
T ss_dssp TGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCG
T ss_pred HHhccCceEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccc
Confidence 33444555556688888999999999999999 99999999886665
No 212
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=90.12 E-value=9.9 Score=37.43 Aligned_cols=112 Identities=14% Similarity=0.055 Sum_probs=52.3
Q ss_pred CEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCC-C-CccceEEEE-c-CCEEEEEcCcCCCCceeceEEEEec
Q 048754 369 SWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPL-P-RSWHSSCII-E-GSKLVVSGGCTDAGVLLSDTYLLDL 444 (625)
Q Consensus 369 ~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~-~-r~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~d~ 444 (625)
+.+++.|+.++ .+.+||+.+. +....-....+. . ...-..+.+ . +..+++.|+.+.. ...+.+||+
T Consensus 178 ~~~l~~~~~dg-----~v~iwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~d~ 247 (416)
T 2pm9_A 178 AHVFASAGSSN-----FASIWDLKAK--KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIWDL 247 (416)
T ss_dssp TTEEEEESSSS-----CEEEEETTTT--EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEEET
T ss_pred CcEEEEEcCCC-----CEEEEECCCC--CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEEeC
Confidence 45777777543 5899999887 443222111000 0 111122233 2 2346666653321 125778887
Q ss_pred CCCCCceEEcCCCCCCCCCCcceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 445 TTDKPMWREIPTSWSPPSRLGHSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 445 ~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
.+.......+.. .. ...-.++.... ++.+++.|+.+ ..+.+||+.+
T Consensus 248 ~~~~~~~~~~~~-~~--~~~v~~~~~s~~~~~~l~s~~~d---------g~v~~wd~~~ 294 (416)
T 2pm9_A 248 RNANTPLQTLNQ-GH--QKGILSLDWCHQDEHLLLSSGRD---------NTVLLWNPES 294 (416)
T ss_dssp TSTTSCSBCCCS-CC--SSCEEEEEECSSCSSCEEEEESS---------SEEEEECSSS
T ss_pred CCCCCCcEEeec-Cc--cCceeEEEeCCCCCCeEEEEeCC---------CCEEEeeCCC
Confidence 653211111110 01 11112232332 44677777653 5688888873
No 213
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=89.99 E-value=14 Score=36.41 Aligned_cols=108 Identities=11% Similarity=0.068 Sum_probs=54.0
Q ss_pred EEEEEccCCCCCccccEEEEECCCCCCEEE-EcC-CCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 370 WLVVFGGCGRQGLLNDVFVLDLDAKQPTWI-EVS-GGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 370 ~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~-~~~-~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
.+++.|+.++ .+.++|+.+. ... .+. .. ....-.+.+...++.+++.|+.+ ..+.+||+.+.
T Consensus 145 ~~l~s~~~dg-----~i~iwd~~~~--~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~ 208 (402)
T 2aq5_A 145 NVLLSAGCDN-----VILVWDVGTG--AAVLTLGPDV---HPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKG 208 (402)
T ss_dssp TEEEEEETTS-----CEEEEETTTT--EEEEEECTTT---CCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTT
T ss_pred CEEEEEcCCC-----EEEEEECCCC--CccEEEecCC---CCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCC
Confidence 4777777543 5889999887 544 221 11 11111222222344566666532 36888998664
Q ss_pred CCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 448 KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 448 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
......... .. .....+++...++.+++.|..... ...+.+||+.+
T Consensus 209 ~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~g~~~~~------d~~i~iwd~~~ 254 (402)
T 2aq5_A 209 TVVAEKDRP--HE-GTRPVHAVFVSEGKILTTGFSRMS------ERQVALWDTKH 254 (402)
T ss_dssp EEEEEEECS--SC-SSSCCEEEECSTTEEEEEEECTTC------CEEEEEEETTB
T ss_pred ceeeeeccC--CC-CCcceEEEEcCCCcEEEEeccCCC------CceEEEEcCcc
Confidence 422221011 11 111234444555677777621111 25788899874
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=89.86 E-value=26 Score=38.29 Aligned_cols=189 Identities=12% Similarity=0.030 Sum_probs=87.9
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++..++.|+.+ ..+.+||+.+ .+....- .. ..... .+++...++..++.|+.+ ..+.+||+.++
T Consensus 66 ~~~~l~~~~~d------g~i~vw~~~~--~~~~~~~-~~-~~~~v-~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~ 129 (814)
T 3mkq_A 66 RKNWIIVGSDD------FRIRVFNYNT--GEKVVDF-EA-HPDYI-RSIAVHPTKPYVLSGSDD-----LTVKLWNWENN 129 (814)
T ss_dssp GGTEEEEEETT------SEEEEEETTT--CCEEEEE-EC-CSSCE-EEEEECSSSSEEEEEETT-----SEEEEEEGGGT
T ss_pred CCCEEEEEeCC------CeEEEEECCC--CcEEEEE-ec-CCCCE-EEEEEeCCCCEEEEEcCC-----CEEEEEECCCC
Confidence 44556666642 2388999876 3333211 11 11111 122222233455566543 35888898765
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEc-CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC-
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIE-GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG- 472 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~- 472 (625)
...-..+... ...-.+.+... ++..++.|+.+ ..+.+||+.+....+..... ...+ -.++....
T Consensus 130 ~~~~~~~~~~----~~~v~~~~~~p~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~~~--~~~~--v~~~~~~~~ 195 (814)
T 3mkq_A 130 WALEQTFEGH----EHFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTTG--QERG--VNYVDYYPL 195 (814)
T ss_dssp SEEEEEEECC----SSCEEEEEEETTEEEEEEEEETT------SEEEEEETTCSSCSEEEECC--CTTC--CCEEEECCS
T ss_pred ceEEEEEcCC----CCcEEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcceeEEecC--CCCC--EEEEEEEEC
Confidence 1111222211 11112222332 34566666632 36888998665544443322 1111 12333332
Q ss_pred -CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC
Q 048754 473 -RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG 551 (625)
Q Consensus 473 -~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 551 (625)
++.+++.|+.+ ..+.+||+.+. ..+.... ... ..-.++....++.+++.|+.+
T Consensus 196 ~~~~~l~~~~~d---------g~i~~~d~~~~----~~~~~~~----------~~~-~~v~~~~~~~~~~~l~~~~~d-- 249 (814)
T 3mkq_A 196 PDKPYMITASDD---------LTIKIWDYQTK----SCVATLE----------GHM-SNVSFAVFHPTLPIIISGSED-- 249 (814)
T ss_dssp TTCCEEEEECTT---------SEEEEEETTTT----EEEEEEE----------CCS-SCEEEEEECSSSSEEEEEETT--
T ss_pred CCCCEEEEEeCC---------CEEEEEECCCC----cEEEEEc----------CCC-CCEEEEEEcCCCCEEEEEeCC--
Confidence 44667776653 57888998732 2232220 011 111223333356677777753
Q ss_pred CCCCCcEEEEeC
Q 048754 552 LHSPSQLFLLDP 563 (625)
Q Consensus 552 ~~~~~~v~~~d~ 563 (625)
..+.+||+
T Consensus 250 ----g~v~vwd~ 257 (814)
T 3mkq_A 250 ----GTLKIWNS 257 (814)
T ss_dssp ----SCEEEEET
T ss_pred ----CeEEEEEC
Confidence 35777777
No 215
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=89.80 E-value=16 Score=35.69 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=32.2
Q ss_pred EEEEEccCCCCCccccEEEEECCCCCC----EEEEcCCCCCC--CCCccceEEEE----cCCEE-EEEcCcCCCCceece
Q 048754 370 WLVVFGGCGRQGLLNDVFVLDLDAKQP----TWIEVSGGAPP--LPRSWHSSCII----EGSKL-VVSGGCTDAGVLLSD 438 (625)
Q Consensus 370 ~iyv~GG~~~~~~~~~~~~~d~~t~~~----~W~~~~~~~~p--~~r~~~~~~~~----~~~~i-yv~GG~~~~~~~~~~ 438 (625)
..++.|+.+ ..+.+||+.+.+. .+..+...... .... .+.... .++.. ++.|+.+ ..
T Consensus 82 ~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~l~~~~~d------g~ 149 (397)
T 1sq9_A 82 CLVATTSFS-----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF-WALKWGASNDRLLSHRLVATDVK------GT 149 (397)
T ss_dssp EEEEEEETT-----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCE-EEEEEECCC----CEEEEEEETT------SC
T ss_pred cEEEEEcCC-----CCEEEEEccCCcccccccceeecccccccCCCcE-EEEEEeeccCCCCceEEEEEeCC------Cc
Confidence 677777754 3588888876621 05555432100 1111 222233 23455 6666632 35
Q ss_pred EEEEecCC
Q 048754 439 TYLLDLTT 446 (625)
Q Consensus 439 ~~~~d~~~ 446 (625)
+.+||+.+
T Consensus 150 i~iwd~~~ 157 (397)
T 1sq9_A 150 TYIWKFHP 157 (397)
T ss_dssp EEEEEEES
T ss_pred EEEEeCCc
Confidence 77777755
No 216
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=89.74 E-value=0.11 Score=45.00 Aligned_cols=44 Identities=7% Similarity=0.013 Sum_probs=34.2
Q ss_pred ccccccCC---CCCCcccccccccccCc-hhHHHHhhhcccCchhhhh
Q 048754 192 SAQYFSGG---HSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVAS 235 (625)
Q Consensus 192 ~~~~~~~~---~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~ 235 (625)
...++|.+ ..++++|+++++++|++ ++++|..+..++++++...
T Consensus 19 ~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~ 66 (176)
T 4hia_A 19 ALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQ 66 (176)
T ss_dssp CCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHH
T ss_pred cEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHH
Confidence 33345666 67779999999999999 8889888888887765443
No 217
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=89.67 E-value=14 Score=34.81 Aligned_cols=186 Identities=13% Similarity=0.090 Sum_probs=86.2
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+. .+.++|+.+.. .-..+. . .. ..-.+++...++..++.|+.++ .+.++|+.++
T Consensus 66 ~~~~l~s~s~d~------~i~vwd~~~~~-~~~~~~--~-h~-~~v~~~~~~~~~~~l~sgs~D~-----~v~lWd~~~~ 129 (304)
T 2ynn_A 66 RKNWIIVGSDDF------RIRVFNYNTGE-KVVDFE--A-HP-DYIRSIAVHPTKPYVLSGSDDL-----TVKLWNWENN 129 (304)
T ss_dssp GGTEEEEEETTS------EEEEEETTTCC-EEEEEE--C-CS-SCEEEEEECSSSSEEEEEETTS-----CEEEEEGGGT
T ss_pred CCCEEEEECCCC------EEEEEECCCCc-EEEEEe--C-CC-CcEEEEEEcCCCCEEEEECCCC-----eEEEEECCCC
Confidence 445566666432 37888887631 112221 1 11 1112223233445666776543 5788888765
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEc--CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE-
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIE--GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY- 471 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~- 471 (625)
...-..+... ... -.++.+. +..+++.|+.+ ..+.++|+.+.......... . .+ ....+.+
T Consensus 130 ~~~~~~~~~h----~~~-v~~v~~~p~~~~~l~sgs~D------~~v~iwd~~~~~~~~~~~~~--~--~~-~v~~~~~~ 193 (304)
T 2ynn_A 130 WALEQTFEGH----EHF-VMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTTG--Q--ER-GVNYVDYY 193 (304)
T ss_dssp TEEEEEECCC----CSC-EEEEEECTTCTTEEEEEETT------SEEEEEETTCSSCSEEEECC--C--TT-CEEEEEEC
T ss_pred cchhhhhccc----CCc-EEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCccceeccC--C--cC-cEEEEEEE
Confidence 1111222211 111 1222332 34567777643 36788887554432322211 1 11 1112222
Q ss_pred --CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccce-EEEEecCCEEEEEecC
Q 048754 472 --GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDH-VAVSMPCGRIIIFGGS 548 (625)
Q Consensus 472 --~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~-~~~~~~~~~l~v~GG~ 548 (625)
.++.+++.|+.+ ..+.++|+.+ ...+.... ...... ++....++.+++.|+.
T Consensus 194 ~~~~~~~l~s~s~D---------~~i~iWd~~~----~~~~~~~~------------~h~~~v~~~~~~p~~~~l~s~s~ 248 (304)
T 2ynn_A 194 PLPDKPYMITASDD---------LTIKIWDYQT----KSCVATLE------------GHMSNVSFAVFHPTLPIIISGSE 248 (304)
T ss_dssp CSTTCCEEEEEETT---------SEEEEEETTT----TEEEEEEE------------CCSSCEEEEEECSSSSEEEEEET
T ss_pred EcCCCCEEEEEcCC---------CeEEEEeCCC----CccceeeC------------CCCCCEEEEEECCCCCEEEEEcC
Confidence 233566666653 5678889873 22333320 111112 2333335667777775
Q ss_pred CCCCCCCCcEEEEeC
Q 048754 549 IAGLHSPSQLFLLDP 563 (625)
Q Consensus 549 ~~~~~~~~~v~~~d~ 563 (625)
+ ..|.++|+
T Consensus 249 D------g~i~iWd~ 257 (304)
T 2ynn_A 249 D------GTLKIWNS 257 (304)
T ss_dssp T------SCEEEEET
T ss_pred C------CeEEEEEC
Confidence 3 46788888
No 218
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=89.55 E-value=22 Score=37.13 Aligned_cols=191 Identities=16% Similarity=0.095 Sum_probs=92.6
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECC-
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLD- 392 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~- 392 (625)
++.+||.... .+.++++|..+.. .-..+. ....-|..... +++++|+.+. .+.+.+||+.
T Consensus 166 ~~~~~V~~~~------~~~V~viD~~t~~-v~~~i~-----~g~~p~~v~~SpDGr~lyv~~~------dg~V~viD~~~ 227 (567)
T 1qks_A 166 ENLFSVTLRD------AGQIALIDGSTYE-IKTVLD-----TGYAVHISRLSASGRYLFVIGR------DGKVNMIDLWM 227 (567)
T ss_dssp GGEEEEEETT------TTEEEEEETTTCC-EEEEEE-----CSSCEEEEEECTTSCEEEEEET------TSEEEEEETTS
T ss_pred CceEEEEeCC------CCeEEEEECCCCe-EEEEEe-----CCCCccceEECCCCCEEEEEcC------CCeEEEEECCC
Confidence 4567776643 2348999988731 122232 11122333332 4667887653 2469999995
Q ss_pred -CCCCEEEEcCCCCCCCCCccceEEE----EcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCC--------
Q 048754 393 -AKQPTWIEVSGGAPPLPRSWHSSCI----IEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWS-------- 459 (625)
Q Consensus 393 -t~~~~W~~~~~~~~p~~r~~~~~~~----~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~-------- 459 (625)
+.+. -..++.+ ..++ +.+.. -+++.+|+..- ..+.+.++|..+.+... .++..+.
T Consensus 228 ~t~~~-v~~i~~G--~~P~--~ia~s~~~~pDGk~l~v~n~------~~~~v~ViD~~t~~~~~-~i~~~~~~~~~~~~~ 295 (567)
T 1qks_A 228 KEPTT-VAEIKIG--SEAR--SIETSKMEGWEDKYAIAGAY------WPPQYVIMDGETLEPKK-IQSTRGMTYDEQEYH 295 (567)
T ss_dssp SSCCE-EEEEECC--SEEE--EEEECCSTTCTTTEEEEEEE------ETTEEEEEETTTCCEEE-EEECCEECTTTCCEE
T ss_pred CCCcE-eEEEecC--CCCc--eeEEccccCCCCCEEEEEEc------cCCeEEEEECCCCcEEE-EEecccccccccccc
Confidence 5522 2344433 2222 22322 25667777532 23577888965533211 2222111
Q ss_pred CCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecC
Q 048754 460 PPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPC 539 (625)
Q Consensus 460 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~ 539 (625)
|.+|...-.....+..+++.-. ....++++|.. ......+... +..+..|......+
T Consensus 296 p~~rva~i~~s~~~~~~vv~~~---------~~g~v~~vd~~--~~~~~~v~~i------------~~~~~~~d~~~~pd 352 (567)
T 1qks_A 296 PEPRVAAILASHYRPEFIVNVK---------ETGKILLVDYT--DLNNLKTTEI------------SAERFLHDGGLDGS 352 (567)
T ss_dssp SCCCEEEEEECSSSSEEEEEET---------TTTEEEEEETT--CSSEEEEEEE------------ECCSSEEEEEECTT
T ss_pred CCCceEEEEEcCCCCEEEEEec---------CCCeEEEEecC--CCccceeeee------------eccccccCceECCC
Confidence 2233222111112223333211 13788899987 3344444433 33444454444444
Q ss_pred CE-EEEEecCCCCCCCCCcEEEEeCC
Q 048754 540 GR-IIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 540 ~~-l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
++ +|+.... .+.|.++|+.
T Consensus 353 gr~~~va~~~------sn~V~ViD~~ 372 (567)
T 1qks_A 353 HRYFITAANA------RNKLVVIDTK 372 (567)
T ss_dssp SCEEEEEEGG------GTEEEEEETT
T ss_pred CCEEEEEeCC------CCeEEEEECC
Confidence 54 4444322 5689999994
No 219
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=89.44 E-value=23 Score=37.17 Aligned_cols=127 Identities=15% Similarity=0.196 Sum_probs=69.9
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCC-CCC---ccceEEEEcCCEEEEEcCcCCCCceeceEEE
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPP-LPR---SWHSSCIIEGSKLVVSGGCTDAGVLLSDTYL 441 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p-~~r---~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 441 (625)
+.++.+|+.+.. +.++.+|..|++..|+.-...... .+. ...+. .+.++++|+... ...++.
T Consensus 66 v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~-a~~~~~v~~~t~-------dg~l~A 131 (582)
T 1flg_A 66 VSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGA-AIYGDKVFFGTL-------DASVVA 131 (582)
T ss_dssp EETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCC-EEETTEEEEEET-------TTEEEE
T ss_pred EECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCcc-EEECCEEEEEeC-------CCEEEE
Confidence 447789988763 239999999998899865432110 000 01122 334668887421 146899
Q ss_pred EecCCCCCceEEcCCCCCCCCCCcceEEEECC---c-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeE
Q 048754 442 LDLTTDKPMWREIPTSWSPPSRLGHSLSVYGR---T-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQ 509 (625)
Q Consensus 442 ~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~---~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~ 509 (625)
+|.++.+..|+.-............+.++.++ + .++++|....+.. ....++.||..+....|+.
T Consensus 132 lD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~---~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 132 LNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFG---VVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp EESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGC---CBCEEEEECTTTCCEEEEE
T ss_pred EECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccC---CCCEEEEEECCCCCEEeec
Confidence 99999999998643210000011122233332 1 1444443211100 1367899999887778964
No 220
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=89.41 E-value=3.3 Score=39.85 Aligned_cols=155 Identities=12% Similarity=0.104 Sum_probs=68.7
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cC---CEEEEEccCCCCCccccEEEEEC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NG---SWLVVFGGCGRQGLLNDVFVLDL 391 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~---~~iyv~GG~~~~~~~~~~~~~d~ 391 (625)
..+++.|+... .-..+.+||+.+ .+...+.... . ...-.++.+ .+ +.+++.|+.+ ..+.+||.
T Consensus 31 ~~l~~~~s~~~---~d~~v~iw~~~~--~~~~~~~~~~--~-~~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~ 97 (357)
T 3i2n_A 31 AKFVTMGNFAR---GTGVIQLYEIQH--GDLKLLREIE--K-AKPIKCGTFGATSLQQRYLATGDFG-----GNLHIWNL 97 (357)
T ss_dssp SEEEEEEC--C---CCEEEEEEEECS--SSEEEEEEEE--E-SSCEEEEECTTCCTTTCCEEEEETT-----SCEEEECT
T ss_pred ceEEEecCccC---CCcEEEEEeCCC--Ccccceeeec--c-cCcEEEEEEcCCCCCCceEEEecCC-----CeEEEEeC
Confidence 36666665411 012378888876 3443221111 0 111122223 22 3566677654 35888998
Q ss_pred CCCCCEEEEcCCCCCCCCCccceEEE------EcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCc
Q 048754 392 DAKQPTWIEVSGGAPPLPRSWHSSCI------IEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLG 465 (625)
Q Consensus 392 ~t~~~~W~~~~~~~~p~~r~~~~~~~------~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~ 465 (625)
.+.+.....+... . ... .+... ..++..++.|+.+ ..+.+||+.+.......+........+.-
T Consensus 98 ~~~~~~~~~~~~~--~-~~v-~~~~~~~~~~~s~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 98 EAPEMPVYSVKGH--K-EII-NAIDGIGGLGIGEGAPEIVTGSRD------GTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TSCSSCSEEECCC--S-SCE-EEEEEESGGGCC-CCCEEEEEETT------SCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCCCccEEEEEec--c-cce-EEEeeccccccCCCccEEEEEeCC------CeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 8763112222211 0 111 11111 1233456666532 36788898665423444432111111121
Q ss_pred ceEE----EECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 466 HSLS----VYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 466 ~~~~----~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
.+++ ...++.+++.|+.+ ..+.+||+.+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~ 199 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYDN---------GDIKLFDLRN 199 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEETT---------SEEEEEETTT
T ss_pred EEEEEEeccCCCCCEEEEEccC---------CeEEEEECcc
Confidence 2222 11344666666542 5788899884
No 221
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=89.35 E-value=17 Score=35.40 Aligned_cols=208 Identities=9% Similarity=-0.040 Sum_probs=87.6
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEc-CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIE-GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPS 462 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~ 462 (625)
..++++|+.++ .-..+... .....+.. ... +++.+++............++.+|+++.. ...+... ...
T Consensus 168 ~~l~~~d~~~g--~~~~l~~~---~~~~~~~~-~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~--~~~ 237 (388)
T 3pe7_A 168 CRLMRVDLKTG--ESTVILQE---NQWLGHPI-YRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN--MRKVKTH--AEG 237 (388)
T ss_dssp EEEEEEETTTC--CEEEEEEE---SSCEEEEE-EETTEEEEEEEEECSCTTTSSCSEEEEETTSCC--CEESCCC--CTT
T ss_pred ceEEEEECCCC--ceEEeecC---CccccccE-ECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc--eEEeeeC--CCC
Confidence 67999999888 55555421 12222222 223 33433332222111224589999976544 5555431 111
Q ss_pred CCcceEEEECCcE-EEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCE
Q 048754 463 RLGHSLSVYGRTK-VLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGR 541 (625)
Q Consensus 463 r~~~~~~~~~~~~-l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~ 541 (625)
..........+++ |+..... .... ...++++|+.+ .+-+.+...+- .. .....+.. .++.- +++
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~-~~~~----~~~l~~~d~~~--g~~~~l~~~~~--~~-~~~~~~~~----~~~sp-dg~ 302 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYL-KGSP----DRFIYSADPET--LENRQLTSMPA--CS-HLMSNYDG----SLMVG-DGS 302 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEE-TTCC----CEEEEEECTTT--CCEEEEEEECC--EE-EEEECTTS----SEEEE-EEC
T ss_pred cccccceECCCCCEEEEEecC-CCCC----cceEEEEecCC--CceEEEEcCCC--ce-eeeecCCC----CeEcc-CCC
Confidence 1111222333333 4333221 1110 12499999984 34455544310 00 00000000 11222 333
Q ss_pred EEEEecCCC---CCCCCCcEEEEeCCCCCCCeEEEcCCCCCCC------CCCcceEEEECCcEEEEEcCcCCCCCccCce
Q 048754 542 IIIFGGSIA---GLHSPSQLFLLDPSEEKPSWRILNVPGQPPK------FAWGHSTCVVGGTRVLVLGGHTGEEWVLNEL 612 (625)
Q Consensus 542 l~v~GG~~~---~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~------~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~ 612 (625)
.+++.-... .......|+++|+ .+..-..+........ ...........+++.+++..... + ...+
T Consensus 303 ~l~~~~~~~~~~~~~~~~~i~~~d~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-g--~~~l 377 (388)
T 3pe7_A 303 DAPVDVQDDSGYKIENDPFLYVFNM--KNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-G--KPAL 377 (388)
T ss_dssp CC------------CCCCEEEEEET--TTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-S--SCEE
T ss_pred cceeEeeeccccccCCCCEEEEEec--cCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC-C--ceeE
Confidence 222211100 0122568999999 5556655543221000 00112333445555555544322 2 3569
Q ss_pred EEEEccCCC
Q 048754 613 HELCLASKQ 621 (625)
Q Consensus 613 ~~~~~~~~~ 621 (625)
|++++.+..
T Consensus 378 ~~~~l~~~~ 386 (388)
T 3pe7_A 378 YLATLPESV 386 (388)
T ss_dssp EEEECCGGG
T ss_pred EEEECChhc
Confidence 999987653
No 222
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=89.31 E-value=0.11 Score=42.51 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=25.4
Q ss_pred CCCcccccccccccCc-hhHHHHhhhcccCch
Q 048754 201 SPLSQHQDICGILQLS-DEVLAHNILSRLTPR 231 (625)
Q Consensus 201 ~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~ 231 (625)
.++|+|+++++++||+ +|++|..+..+.+++
T Consensus 23 ~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~ 54 (132)
T 2pr5_A 23 PIVYVNQGFVQMTGYETEEILGKNCRFLQGKH 54 (132)
T ss_dssp CEEEECHHHHHHHSCCHHHHTTSCGGGGCCTT
T ss_pred cEEEECHHHHHHhCcCHHHHcCCChhhhCCCC
Confidence 6679999999999999 888887776555554
No 223
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=89.28 E-value=28 Score=37.98 Aligned_cols=213 Identities=8% Similarity=-0.053 Sum_probs=102.7
Q ss_pred eEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccc
Q 048754 334 TFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWH 413 (625)
Q Consensus 334 ~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~ 413 (625)
+++|+..+ ..+.....+.......-.+++...++.|++ |.. ..-+++||+.++ ++..+.....+ ...-.
T Consensus 385 l~~~~~~~--~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~-----~~Gl~~~~~~~~--~~~~~~~~~~~-~~~v~ 453 (781)
T 3v9f_A 385 INVFENGK--RVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTY-----LGNISYYNTRLK--KFQIIELEKNE-LLDVR 453 (781)
T ss_dssp EEEEETTE--EEEECC-----CCCSBEEEEEECTTSCEEE-EET-----TEEEEEECSSSC--EEEECCSTTTC-CCCEE
T ss_pred EEEEECCC--CeEEEccCCCCCCCcceEEEEECCCCCEEE-Eec-----cCCEEEEcCCCC--cEEEeccCCCC-CCeEE
Confidence 78888765 345433111111111123333333456766 322 135899999888 88877532111 11112
Q ss_pred eEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCC-CCC-CCCcceEEEECCcEEEEEcCCcCCCCcccc
Q 048754 414 SSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSW-SPP-SRLGHSLSVYGRTKVLMFGGLAKSGHLRLR 491 (625)
Q Consensus 414 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~-~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~ 491 (625)
+.+...++.++|... .-+++||+.+.. |..+.... .+. ...-.+++...++.|++-..
T Consensus 454 ~i~~d~~g~lwigt~--------~Gl~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~---------- 513 (781)
T 3v9f_A 454 VFYEDKNKKIWIGTH--------AGVFVIDLASKK--VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF---------- 513 (781)
T ss_dssp EEEECTTSEEEEEET--------TEEEEEESSSSS--CCEEECTTTSSCSCSCEEEEEECTTCCEEEEES----------
T ss_pred EEEECCCCCEEEEEC--------CceEEEeCCCCe--EEecccCcccccccceeEEEEEcCCCCEEEEEc----------
Confidence 222233457777321 358899987765 55443211 111 11222333334457776421
Q ss_pred cCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcE-EEEeCCCCCCCe
Q 048754 492 SGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQL-FLLDPSEEKPSW 570 (625)
Q Consensus 492 ~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v-~~~d~~~~~~~W 570 (625)
...+++||+. +.+++..... ...+... -.+.+.-.++.|++... .-+ ++||+ .+.++
T Consensus 514 ~~Gl~~~~~~--~~~~~~~~~~---------~~l~~~~-i~~i~~d~~g~lWi~T~--------~Glv~~~d~--~~~~~ 571 (781)
T 3v9f_A 514 GGGVGIYTPD--MQLVRKFNQY---------EGFCSNT-INQIYRSSKGQMWLATG--------EGLVCFPSA--RNFDY 571 (781)
T ss_dssp SSCEEEECTT--CCEEEEECTT---------TTCSCSC-EEEEEECTTSCEEEEET--------TEEEEESCT--TTCCC
T ss_pred CCCEEEEeCC--CCeEEEccCC---------CCCCCCe-eEEEEECCCCCEEEEEC--------CCceEEECC--CCCcE
Confidence 1457889887 4466655422 0112111 12222223567777522 245 88888 56677
Q ss_pred EEEcCCCCCCCCCCcceEEEECCcEEEEEc
Q 048754 571 RILNVPGQPPKFAWGHSTCVVGGTRVLVLG 600 (625)
Q Consensus 571 ~~v~~~~~~p~~r~~~~~~~~~~~~i~i~G 600 (625)
........+|.... .+++...++.|++.+
T Consensus 572 ~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 572 QVFQRKEGLPNTHI-RAISEDKNGNIWAST 600 (781)
T ss_dssp EEECGGGTCSCCCC-CEEEECSSSCEEEEC
T ss_pred EEccccCCCCCceE-EEEEECCCCCEEEEc
Confidence 77654333443332 344444455666544
No 224
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=89.25 E-value=20 Score=38.11 Aligned_cols=198 Identities=16% Similarity=0.030 Sum_probs=91.8
Q ss_pred cccEEEEECCC------CCCEEEEcC-CCCCCCCCccceEEEEcCCEEEEEcCcCCCCc--eeceEEEEecC-CCC-Cce
Q 048754 383 LNDVFVLDLDA------KQPTWIEVS-GGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGV--LLSDTYLLDLT-TDK-PMW 451 (625)
Q Consensus 383 ~~~~~~~d~~t------~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~--~~~~~~~~d~~-~~~-~~W 451 (625)
...++++|..+ . ....+. .. + .........-+++.|++ ........ ....++++|++ +.. ...
T Consensus 160 ~~~i~~~~~~~~~~~~~~--~~~~l~~~~--~-~~~~~~~~SpDG~~la~-~~~~~~~~~~~~~~i~~~d~~~~g~~~~~ 233 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRS--AVRELSDDA--H-RFVTGPRLSPDGRQAVW-LAWDHPRMPWEGTELKTARVTEDGRFADT 233 (662)
T ss_dssp EEEEEEEETTSTTTTCGG--GSEESSCSC--S-SEECCCEECTTSSEEEE-EEECTTCCTTTCEEEEEEEECTTSCEEEE
T ss_pred eeEEEEEECCCCccccCC--ceeEEEecC--C-CcccCceECCCCCEEEE-EECCCCCCCCCCcEEEEEEECCCCccccc
Confidence 46899999987 5 455555 32 1 11111122224444444 33222111 12479999986 342 024
Q ss_pred EEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCcc-
Q 048754 452 REIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRL- 530 (625)
Q Consensus 452 ~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~- 530 (625)
..+... ............++++|+.+..+ + ...+|.+|+. +.++..+...... ...|.-..
T Consensus 234 ~~l~~~---~~~~~~~~~~spdg~l~~~~~~~--~-----~~~l~~~~~~--~~~~~~l~~~~~~------~~~p~w~~~ 295 (662)
T 3azo_A 234 RTLLGG---PEEAIAQAEWAPDGSLIVATDRT--G-----WWNLHRVDPA--TGAATQLCRREEE------FAGPLWTPG 295 (662)
T ss_dssp EEEEEE---TTBCEEEEEECTTSCEEEEECTT--S-----SCEEEEECTT--TCCEEESSCCSSB------SSCCCCSTT
T ss_pred EEeCCC---CCceEcceEECCCCeEEEEECCC--C-----CeEEEEEECC--CCceeeccccccc------ccCcccccc
Confidence 444321 01112233334455677665442 1 2478999986 4467766443100 00011110
Q ss_pred ceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccC
Q 048754 531 DHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLN 610 (625)
Q Consensus 531 ~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~ 610 (625)
........++++++.+.. ....+|.+|+ .+.....+.. +... ..+.....++.+++..+.... ..
T Consensus 296 ~~~~~~~~~~~~~~~~~~-----~~~~l~~~d~--~~~~~~~l~~----~~~~-~~~~~s~~~~~~~~~~~~~~~---~~ 360 (662)
T 3azo_A 296 MRWFAPLANGLIAVVHGK-----GAAVLGILDP--ESGELVDAAG----PWTE-WAATLTVSGTRAVGVAASPRT---AY 360 (662)
T ss_dssp CCSEEECTTSCEEEEEBS-----SSCEEEEEET--TTTEEEECCS----SCCE-EEEEEEEETTEEEEEEEETTE---EE
T ss_pred CceEeEeCCCEEEEEEEc-----CccEEEEEEC--CCCcEEEecC----CCCe-EEEEEecCCCEEEEEEcCCCC---CC
Confidence 112222336777766543 2558999998 4556665532 1111 112202334456555443221 35
Q ss_pred ceEEEEccC
Q 048754 611 ELHELCLAS 619 (625)
Q Consensus 611 d~~~~~~~~ 619 (625)
++|.+++.+
T Consensus 361 ~i~~~d~~~ 369 (662)
T 3azo_A 361 EVVELDTVT 369 (662)
T ss_dssp EEEEEETTT
T ss_pred EEEEEECCC
Confidence 677776543
No 225
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=89.25 E-value=18 Score=35.60 Aligned_cols=134 Identities=12% Similarity=0.082 Sum_probs=65.7
Q ss_pred eEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccc
Q 048754 334 TFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWH 413 (625)
Q Consensus 334 ~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~ 413 (625)
+++||+.+ .+...+.... ....-.+++...++..++.|+.+ ..+.+||+.+.+ .-..+.. .... -
T Consensus 115 v~lw~~~~--~~~~~~~~~~--~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~-~~~~~~~---~~~~--v 179 (401)
T 4aez_A 115 VYVWNADS--GSVSALAETD--ESTYVASVKWSHDGSFLSVGLGN-----GLVDIYDVESQT-KLRTMAG---HQAR--V 179 (401)
T ss_dssp EEEEETTT--CCEEEEEECC--TTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCC-EEEEECC---CSSC--E
T ss_pred EEEeeCCC--CcEeEeeecC--CCCCEEEEEECCCCCEEEEECCC-----CeEEEEECcCCe-EEEEecC---CCCc--e
Confidence 88888876 3444332111 11111222222344566666643 358899988772 1223322 1111 2
Q ss_pred eEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccC
Q 048754 414 SSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSG 493 (625)
Q Consensus 414 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 493 (625)
.++.+++ .+++.|+.+ ..+.++|+......-..+.. ...+ -.++....++.+++.|+.+ .
T Consensus 180 ~~~~~~~-~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~--~~~~--v~~~~~~~~~~~l~s~~~d---------~ 239 (401)
T 4aez_A 180 GCLSWNR-HVLSSGSRS------GAIHHHDVRIANHQIGTLQG--HSSE--VCGLAWRSDGLQLASGGND---------N 239 (401)
T ss_dssp EEEEEET-TEEEEEETT------SEEEEEETTSSSCEEEEEEC--CSSC--EEEEEECTTSSEEEEEETT---------S
T ss_pred EEEEECC-CEEEEEcCC------CCEEEEecccCcceeeEEcC--CCCC--eeEEEEcCCCCEEEEEeCC---------C
Confidence 2334455 466666532 36788897643322222221 1111 1233333344677777753 5
Q ss_pred ceEEEEcCC
Q 048754 494 ESYTIDLGD 502 (625)
Q Consensus 494 ~~~~~d~~~ 502 (625)
.+.+||+.+
T Consensus 240 ~v~iwd~~~ 248 (401)
T 4aez_A 240 VVQIWDARS 248 (401)
T ss_dssp CEEEEETTC
T ss_pred eEEEccCCC
Confidence 788899873
No 226
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=89.23 E-value=29 Score=38.01 Aligned_cols=154 Identities=8% Similarity=0.013 Sum_probs=78.9
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCC---ccceeEEEEcCCEEEEEccCCCCCccccEEEEEC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPG---RWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDL 391 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~---r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~ 391 (625)
++.|++... +-+++||..+ .+|..+.....+.. ..-.++....++.|++... +-+++||+
T Consensus 462 ~g~lwigt~--------~Gl~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-------~Gl~~~~~ 524 (795)
T 4a2l_A 462 EGNLWLGTL--------SALVRFNPEQ--RSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-------EGLSVFKQ 524 (795)
T ss_dssp SSCEEEEES--------SCEEEEETTT--TEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-------SCEEEEEE
T ss_pred CCCEEEEec--------CceeEEeCCC--CeEEEccccccccccCCceEEEEEECCCCCEEEEeC-------CceEEEeC
Confidence 456766542 1289999877 57877642211111 1112333334456777543 23899999
Q ss_pred CCCCCEEEEcCCC-CCCCCCccceEE-EE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCC-CCCCCCCCcce
Q 048754 392 DAKQPTWIEVSGG-APPLPRSWHSSC-II-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPT-SWSPPSRLGHS 467 (625)
Q Consensus 392 ~t~~~~W~~~~~~-~~p~~r~~~~~~-~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~-~~~p~~r~~~~ 467 (625)
.+. ++ .+... ..+........+ .. .++.+++... .-+++||+.+.. +..... .++|... -.+
T Consensus 525 ~~~--~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~--------~Gl~~~d~~~~~--~~~~~~~~gl~~~~-i~~ 590 (795)
T 4a2l_A 525 EGL--DI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR--------EGFYCFNEKDKQ--IKRYNTTNGLPNNV-VYG 590 (795)
T ss_dssp ETT--EE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES--------SCEEEEETTTTE--EEEECGGGTCSCSC-EEE
T ss_pred CCC--eE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC--------CCceeECCCCCc--EEEeCCCCCCchhh-eEE
Confidence 888 77 44311 001111111122 22 3456777321 147889976654 766543 2233322 233
Q ss_pred EEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeee
Q 048754 468 LSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLEC 512 (625)
Q Consensus 468 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~ 512 (625)
++.-.++.|++.+. +.+.+||++ +.++.....
T Consensus 591 i~~d~~g~lWi~t~-----------~Gl~~~~~~--~~~~~~~~~ 622 (795)
T 4a2l_A 591 ILEDSFGRLWLSTN-----------RGISCFNPE--TEKFRNFTE 622 (795)
T ss_dssp EEECTTSCEEEEET-----------TEEEEEETT--TTEEEEECG
T ss_pred EEECCCCCEEEEcC-----------CceEEEcCC--CCcEEEcCC
Confidence 33334557887642 567889988 446665543
No 227
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=89.19 E-value=14 Score=34.26 Aligned_cols=218 Identities=9% Similarity=-0.054 Sum_probs=104.0
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+|+.... .+.+++||... ++..+..+. ....-++++...++.+|+..... +.+++||+. +
T Consensus 72 ~g~l~v~~~~------~~~v~~~d~~g---~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~~-g 134 (300)
T 2qc5_A 72 LGDIWFTENG------ANKIGKLSKKG---GFTEYPLPQ--PDSGPYGITEGLNGDIWFTQLNG-----DRIGKLTAD-G 134 (300)
T ss_dssp TSCEEEEETT------TTEEEEECTTS---CEEEEECSS--TTCCEEEEEECSTTCEEEEETTT-----TEEEEECTT-S
T ss_pred CCCEEEEecC------CCeEEEECCCC---CeEEecCCC--CCCCCccceECCCCCEEEEccCC-----CeEEEECCC-C
Confidence 4678876532 12388888763 455442221 11122333433355688775321 358889987 5
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
+...+... .....-+..+...++++|+.... ...+++||+ +.+ ...+... .....-.+++.-.++
T Consensus 135 --~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~--~~~~~~~--~~~~~~~~i~~d~~g 199 (300)
T 2qc5_A 135 --TIYEYDLP--NKGSYPAFITLGSDNALWFTENQ------NNSIGRITN-TGK--LEEYPLP--TNAAAPVGITSGNDG 199 (300)
T ss_dssp --CEEEEECS--STTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCC--EEEEECS--STTCCEEEEEECTTS
T ss_pred --CEEEccCC--CCCCCceeEEECCCCCEEEEecC------CCeEEEECC-CCc--EEEeeCC--CCCCCcceEEECCCC
Confidence 34433211 01112223333344568875421 136888987 433 5544321 111112233333355
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS 554 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~ 554 (625)
.||+.... ...+++||+. ..+...... .........+.-.+++||+....
T Consensus 200 ~l~v~~~~---------~~~i~~~~~~---g~~~~~~~~------------~~~~~~~~i~~d~~g~l~v~~~~------ 249 (300)
T 2qc5_A 200 ALWFVEIM---------GNKIGRITTT---GEISEYDIP------------TPNARPHAITAGKNSEIWFTEWG------ 249 (300)
T ss_dssp SEEEEETT---------TTEEEEECTT---CCEEEEECS------------STTCCEEEEEECSTTCEEEEETT------
T ss_pred CEEEEccC---------CCEEEEEcCC---CcEEEEECC------------CCCCCceEEEECCCCCEEEeccC------
Confidence 78876432 2568888874 233333211 01111123333336678887532
Q ss_pred CCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEc
Q 048754 555 PSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLG 600 (625)
Q Consensus 555 ~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~G 600 (625)
.+.+.+||+ +.+.......... ..-++++...++.|++.+
T Consensus 250 ~~~i~~~~~---~g~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 250 ANQIGRITN---DNTIQEYQLQTEN---AEPHGITFGKDGSVWFAL 289 (300)
T ss_dssp TTEEEEECT---TSCEEEEECCSTT---CCCCCEEECTTSCEEEEC
T ss_pred CCeEEEECC---CCcEEEEECCccC---CccceeEeCCCCCEEEEc
Confidence 457899998 3455554322111 112344555556766654
No 228
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=89.02 E-value=14 Score=34.16 Aligned_cols=218 Identities=7% Similarity=-0.057 Sum_probs=103.6
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+|+.... .+.+++||... .+.....+. ....-++++.-.++.+|+..... ..+++||+. +
T Consensus 25 ~g~l~v~~~~------~~~v~~~d~~~---~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~~-g 87 (299)
T 2z2n_A 25 KGKVWITQHK------ANMISCINLDG---KITEYPLPT--PDAKVMCLTISSDGEVWFTENAA-----NKIGRITKK-G 87 (299)
T ss_dssp TSCEEEEETT------TTEEEEECTTC---CEEEEECSS--TTCCEEEEEECTTSCEEEEETTT-----TEEEEECTT-S
T ss_pred CCCEEEEecC------CCcEEEEcCCC---CeEEecCCc--ccCceeeEEECCCCCEEEeCCCC-----CeEEEECCC-C
Confidence 4577776432 12388888762 455442111 11122333333455688875421 358889886 3
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
+...+... .....-+..+...++.+|+.... ...++++|+ +.. ...+... .....-++++...++
T Consensus 88 --~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~--~~~~~~~--~~~~~~~~i~~~~~g 152 (299)
T 2z2n_A 88 --IIKEYTLP--NPDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGK--IREYELP--NKGSYPSFITLGSDN 152 (299)
T ss_dssp --CEEEEECS--STTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCC--EEEEECS--STTCCEEEEEECTTS
T ss_pred --cEEEEeCC--CcCCCceeeEECCCCCEEEEecC------CceEEEECC-CCC--EEEecCC--CCCCCCceEEEcCCC
Confidence 34443311 01112233333345578886432 136888887 433 4443221 111222344444455
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS 554 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~ 554 (625)
.+|+.... ...++++|+. . +...+... .........+...+++||+....
T Consensus 153 ~l~v~~~~---------~~~i~~~~~~-g--~~~~~~~~------------~~~~~~~~i~~~~~g~l~v~~~~------ 202 (299)
T 2z2n_A 153 ALWFTENQ---------NNAIGRITES-G--DITEFKIP------------TPASGPVGITKGNDDALWFVEII------ 202 (299)
T ss_dssp CEEEEETT---------TTEEEEECTT-C--CEEEEECS------------STTCCEEEEEECTTSSEEEEETT------
T ss_pred CEEEEeCC---------CCEEEEEcCC-C--cEEEeeCC------------CCCCcceeEEECCCCCEEEEccC------
Confidence 78876421 2578889883 2 34333211 01111123333335778887532
Q ss_pred CCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEc
Q 048754 555 PSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLG 600 (625)
Q Consensus 555 ~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~G 600 (625)
.+.+++||+ +..+........ ...-.+++...++.+|+..
T Consensus 203 ~~~i~~~~~---~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 203 GNKIGRITT---SGEITEFKIPTP---NARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp TTEEEEECT---TCCEEEEECSST---TCCEEEEEECSTTCEEEEE
T ss_pred CceEEEECC---CCcEEEEECCCC---CCCceeEEECCCCCEEEec
Confidence 457899998 345555432111 1111233344455666653
No 229
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=88.93 E-value=0.06 Score=43.55 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=35.5
Q ss_pred cccccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCc
Q 048754 187 QQYDQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTP 230 (625)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~ 230 (625)
..+.....++|.+..++++|.++++++|++ ++++|.++++.+.|
T Consensus 24 d~l~~Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~ 68 (125)
T 1nwz_A 24 DGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAP 68 (125)
T ss_dssp TTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCG
T ss_pred hccCceEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccc
Confidence 333444445688888999999999999999 99999999886665
No 230
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=88.91 E-value=4.1 Score=39.79 Aligned_cols=154 Identities=12% Similarity=0.063 Sum_probs=68.0
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
++.+++.|+.+ ..+.+||+.++ .|..+.......... .+.....++.+++.|+.+ ..+.+||+.+.
T Consensus 22 ~g~~l~~~~~d-----~~i~iw~~~~~--~~~~~~~~~~h~~~v-~~~~~s~~~~~l~s~s~d------~~v~vwd~~~~ 87 (377)
T 3dwl_C 22 QRTEFVTTTAT-----NQVELYEQDGN--GWKHARTFSDHDKIV-TCVDWAPKSNRIVTCSQD------RNAYVYEKRPD 87 (377)
T ss_dssp SSSEEECCCSS-----SCBCEEEEETT--EEEECCCBCCCSSCE-EEEEECTTTCCEEEEETT------SSEEEC-----
T ss_pred CCCEEEEecCC-----CEEEEEEccCC--ceEEEEEEecCCceE-EEEEEeCCCCEEEEEeCC------CeEEEEEcCCC
Confidence 34466666643 35778888877 777765432111111 122222344566666632 25777887553
Q ss_pred CCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCC
Q 048754 448 KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPP 527 (625)
Q Consensus 448 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~ 527 (625)
. .|..+... ......-.++....++.+++.|+.+ ..+.++|+.+. ..|..+.... .+.
T Consensus 88 ~-~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~-~~~~~~~~~~----------~~h 145 (377)
T 3dwl_C 88 G-TWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGA---------RVISVCYFEQE-NDWWVSKHLK----------RPL 145 (377)
T ss_dssp --CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESS---------SCEEECCC------CCCCEEEC----------SSC
T ss_pred C-ceeeeeEe-cccCCceEEEEECCCCCEEEEEecC---------CeEEEEEECCc-ccceeeeEee----------ccc
Confidence 3 12211110 0111111222223344566666653 46777887742 2344343331 011
Q ss_pred CccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 528 PRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 528 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
...-.++....++++++.|+.+ ..+.+||+
T Consensus 146 ~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~ 175 (377)
T 3dwl_C 146 RSTILSLDWHPNNVLLAAGCAD------RKAYVLSA 175 (377)
T ss_dssp CSCEEEEEECTTSSEEEEEESS------SCEEEEEE
T ss_pred CCCeEEEEEcCCCCEEEEEeCC------CEEEEEEE
Confidence 1112233333366778887753 45777776
No 231
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=88.74 E-value=0.071 Score=45.42 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=32.9
Q ss_pred ccccccC---CCCCCcccccccccccCc-hhHHHHhhhcccCchhhh
Q 048754 192 SAQYFSG---GHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 192 ~~~~~~~---~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~ 234 (625)
...++|. +..++++|+++++++|++ ++++|.++..++++++..
T Consensus 47 ~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~ 93 (166)
T 3ue6_A 47 NFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDP 93 (166)
T ss_dssp CEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCH
T ss_pred eEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCH
Confidence 3334466 567779999999999999 888888887777765533
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=88.53 E-value=0.81 Score=45.27 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=48.0
Q ss_pred eeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEE
Q 048754 361 HTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTY 440 (625)
Q Consensus 361 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 440 (625)
++..++.++.||+.+. + ..++.+|..+++..|+.-. . +. . .+. .+.++.+|+.++.+ ..++
T Consensus 2 ~ssP~v~~~~v~~gs~-d-----g~v~a~d~~tG~~~W~~~~-~--~~-~--s~p-~~~~g~~~v~~s~d------g~l~ 62 (369)
T 2hz6_A 2 SSTVTLPETLLFVSTL-D-----GSLHAVSKRTGSIKWTLKE-D--PV-L--QVP-THVEEPAFLPDPND------GSLY 62 (369)
T ss_dssp ------CTTEEEEEET-T-----SEEEEEETTTCCEEEEEEC-C--CS-C--CCC------CCEEECTTT------CCEE
T ss_pred CCCCeeeCCEEEEEcC-C-----CEEEEEECCCCCEEEEecC-C--Cc-e--ecc-eEcCCCEEEEeCCC------CEEE
Confidence 3444556777776543 1 3699999999988898543 2 11 1 112 22344677765422 3588
Q ss_pred EEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEe
Q 048754 441 LLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQL 510 (625)
Q Consensus 441 ~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~ 510 (625)
.+|.++.+..|..-.. .+.. ...+.++..++.+| +|+. ...++.+|+.+....|+.-
T Consensus 63 a~d~~tG~~~w~~~~~--~~~~-~~~sp~~~~~~~v~-~g~~---------dg~v~a~D~~tG~~~w~~~ 119 (369)
T 2hz6_A 63 TLGSKNNEGLTKLPFT--IPEL-VQASPCRSSDGILY-MGKK---------QDIWYVIDLLTGEKQQTLS 119 (369)
T ss_dssp EC-----CCSEECSCC--HHHH-HTTCSCC-----CC-CCEE---------EEEEEEECCC---------
T ss_pred EEECCCCceeeeeecc--Cccc-cccCceEecCCEEE-EEeC---------CCEEEEEECCCCcEEEEec
Confidence 8998777766764211 1100 01111121232444 3332 2568889988766678643
No 233
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=88.50 E-value=17 Score=34.49 Aligned_cols=220 Identities=12% Similarity=0.050 Sum_probs=104.2
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQ 395 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~ 395 (625)
+.+++.|+.+. .+.++|+.+. ..-..+. ..+.. -.+++...+++.++.|+.. ..+.+||..+.+
T Consensus 92 ~~~l~s~s~D~------~i~lWd~~~~-~~~~~~~--~~~~~--~~~~~~spdg~~l~~g~~d-----g~v~i~~~~~~~ 155 (321)
T 3ow8_A 92 LPIAASSSLDA------HIRLWDLENG-KQIKSID--AGPVD--AWTLAFSPDSQYLATGTHV-----GKVNIFGVESGK 155 (321)
T ss_dssp SSEEEEEETTS------EEEEEETTTT-EEEEEEE--CCTTC--CCCEEECTTSSEEEEECTT-----SEEEEEETTTCS
T ss_pred CCEEEEEeCCC------cEEEEECCCC-CEEEEEe--CCCcc--EEEEEECCCCCEEEEEcCC-----CcEEEEEcCCCc
Confidence 34555565432 3788888763 1112221 11111 1223333344566777643 358889988773
Q ss_pred CEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcE
Q 048754 396 PTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTK 475 (625)
Q Consensus 396 ~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~ 475 (625)
..+..... ...-.+.+...++++++.|+.+ ..+.+||+.+... -..+.. ...+. .+++...++.
T Consensus 156 ~~~~~~~~-----~~~v~~~~~spdg~~lasg~~d------g~i~iwd~~~~~~-~~~~~~--h~~~v--~~l~~spd~~ 219 (321)
T 3ow8_A 156 KEYSLDTR-----GKFILSIAYSPDGKYLASGAID------GIINIFDIATGKL-LHTLEG--HAMPI--RSLTFSPDSQ 219 (321)
T ss_dssp EEEEEECS-----SSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEE-EEEECC--CSSCC--CEEEECTTSC
T ss_pred eeEEecCC-----CceEEEEEECCCCCEEEEEcCC------CeEEEEECCCCcE-EEEEcc--cCCce--eEEEEcCCCC
Confidence 33322111 1111222233445666666643 3578889765431 122221 11111 2333444557
Q ss_pred EEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEE-ecCCEEEEEecCCCCCCC
Q 048754 476 VLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVS-MPCGRIIIFGGSIAGLHS 554 (625)
Q Consensus 476 l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~~l~v~GG~~~~~~~ 554 (625)
+++.|+.+ ..+.+||+.+ .. .+... ........++. ..++..++.|+.+
T Consensus 220 ~l~s~s~d---------g~i~iwd~~~--~~--~~~~~------------~~h~~~v~~~~~sp~~~~l~s~s~D----- 269 (321)
T 3ow8_A 220 LLVTASDD---------GYIKIYDVQH--AN--LAGTL------------SGHASWVLNVAFCPDDTHFVSSSSD----- 269 (321)
T ss_dssp EEEEECTT---------SCEEEEETTT--CC--EEEEE------------CCCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred EEEEEcCC---------CeEEEEECCC--cc--eeEEE------------cCCCCceEEEEECCCCCEEEEEeCC-----
Confidence 77777753 5688899873 22 22222 11111122233 3366777777753
Q ss_pred CCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 555 PSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 555 ~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
..+.++|+ .+.+ .+.... .....-.++...+++..++.||.++
T Consensus 270 -~~v~iwd~--~~~~--~~~~~~--~h~~~v~~v~~s~~g~~l~s~~~d~ 312 (321)
T 3ow8_A 270 -KSVKVWDV--GTRT--CVHTFF--DHQDQVWGVKYNGNGSKIVSVGDDQ 312 (321)
T ss_dssp -SCEEEEET--TTTE--EEEEEC--CCSSCEEEEEECTTSSEEEEEETTC
T ss_pred -CcEEEEeC--CCCE--EEEEEc--CCCCcEEEEEECCCCCEEEEEeCCC
Confidence 46888998 3332 222110 1111112334445667778887655
No 234
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=88.48 E-value=0.077 Score=41.50 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=32.2
Q ss_pred cccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchh
Q 048754 191 QSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRD 232 (625)
Q Consensus 191 ~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~ 232 (625)
....++|.+..++++|+++++++|++ ++++|..+.+++ |++
T Consensus 14 ~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~ 55 (114)
T 3luq_A 14 AALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEI 55 (114)
T ss_dssp SEEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTC
T ss_pred ceEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-Ccc
Confidence 33445577788889999999999999 888888887777 443
No 235
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=88.41 E-value=0.24 Score=41.84 Aligned_cols=47 Identities=4% Similarity=0.003 Sum_probs=37.1
Q ss_pred hccccccccccccCCCCCCccccc---ccccccCchhHHHHhhhcccCch
Q 048754 185 CNQQYDQSAQYFSGGHSPLSQHQD---ICGILQLSDEVLAHNILSRLTPR 231 (625)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~n~~---~~~~~g~~~e~~~~~~~~~~~~~ 231 (625)
+...+.....++|.++.++|+|++ +++++|.+++++|.++.++.++.
T Consensus 24 IL~~~~~gI~~vD~~g~I~~~N~a~~~~~~i~g~~~~~iGr~v~~~~~~~ 73 (151)
T 2qkp_A 24 ILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFKRTPSQVGRNVELCHPPK 73 (151)
T ss_dssp HHHHSSSEEEEEETTSBEEEECCCSCGGGCSSCCCGGGTTSBGGGSSCHH
T ss_pred HHHhCCCceEEEcCCCeEEEEeCCCchhhhhcCCCHHHcCCCHHHhCCHH
Confidence 334445555567888889999999 99999966889999998877654
No 236
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=88.39 E-value=16 Score=34.62 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=37.3
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEE-cCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEec
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIE-VSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDL 444 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~-~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~ 444 (625)
.++++|+.++.+ +.++++|+.++ +... ++. +....-+..+.. +++.+|+.+.. ...+++||+
T Consensus 9 ~~~~~~v~~~~~-----~~v~~~d~~~~--~~~~~~~~---~~~~~~~~~~~s~dg~~~~v~~~~------~~~i~~~d~ 72 (349)
T 1jmx_B 9 AGHEYMIVTNYP-----NNLHVVDVASD--TVYKSCVM---PDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDL 72 (349)
T ss_dssp TTCEEEEEEETT-----TEEEEEETTTT--EEEEEEEC---SSCCSSCEEEECTTSSEEEEEETT------TTEEEEEET
T ss_pred CCCEEEEEeCCC-----CeEEEEECCCC--cEEEEEec---CCCCCCceeEECCCCCEEEEEeCC------CCcEEEEeC
Confidence 356788877643 46999999887 4432 221 110011233333 44467776532 146899998
Q ss_pred CCCC
Q 048754 445 TTDK 448 (625)
Q Consensus 445 ~~~~ 448 (625)
.+.+
T Consensus 73 ~t~~ 76 (349)
T 1jmx_B 73 DTCK 76 (349)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 7654
No 237
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=88.36 E-value=30 Score=37.13 Aligned_cols=259 Identities=12% Similarity=0.020 Sum_probs=114.9
Q ss_pred ECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCC-CC-CccceeEEE-EcCCEEEEEccCCCCCccccEEEEE
Q 048754 314 AGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSS-PP-GRWGHTLSS-LNGSWLVVFGGCGRQGLLNDVFVLD 390 (625)
Q Consensus 314 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~-p~-~r~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d 390 (625)
.|+++|.+--.. ......+|+.+... ..|+.+...+. .. ......... ..+++.++|.-.....-...++++|
T Consensus 78 dG~~~~~~~~~~--~~~~~~l~~~~~~~--~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 78 RNGRFFYVRTHK--DKEKAILYWRQGES--GQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp ETTEEEEEEECT--TCSSCEEEEEESTT--SCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred ECCEEEEEEEcC--CCeEEEEEEEcCCC--CCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEE
Confidence 345555543211 12234578877654 46776632111 00 111111222 2333343433221111234799999
Q ss_pred CCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCC-------ceeceEEEEecCCCCCceEEcCCCCCCCCC
Q 048754 391 LDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAG-------VLLSDTYLLDLTTDKPMWREIPTSWSPPSR 463 (625)
Q Consensus 391 ~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-------~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 463 (625)
+.++ .... .. ..+.... ...+...+++.++++.....+ .....++.+++.+....-..+... ...+.
T Consensus 154 l~tg--~~~~-~~-~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~-~~~~~ 227 (695)
T 2bkl_A 154 VDSG--EWSK-VD-VIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER-TGDPT 227 (695)
T ss_dssp TTTC--CBCS-SC-CBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC-CCCTT
T ss_pred CCCC--CCcC-Cc-ccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec-CCCCE
Confidence 9988 4320 11 1111211 223333444555555433221 134569999986654211222211 11122
Q ss_pred CcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEE
Q 048754 464 LGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRII 543 (625)
Q Consensus 464 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~ 543 (625)
...+...-.+++.+++....... ..++|.++.. +..|..+... . ... ...+.. ++.+|
T Consensus 228 ~~~~~~~SpDG~~l~~~~~~~~~-----~~~l~~~~~~--~~~~~~l~~~------------~-~~~-~~~~~~-~g~l~ 285 (695)
T 2bkl_A 228 TFLQSDLSRDGKYLFVYILRGWS-----ENDVYWKRPG--EKDFRLLVKG------------V-GAK-YEVHAW-KDRFY 285 (695)
T ss_dssp CEEEEEECTTSCCEEEEEEETTT-----EEEEEEECTT--CSSCEEEEEC------------S-SCC-EEEEEE-TTEEE
T ss_pred EEEEEEECCCCCEEEEEEeCCCC-----ceEEEEEcCC--CCceEEeecC------------C-Cce-EEEEec-CCcEE
Confidence 22334344444444443332211 3588888765 4477777643 1 111 122223 55555
Q ss_pred EEecCCCCCCCCCcEEEEeCCCCCCC---eEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEc
Q 048754 544 IFGGSIAGLHSPSQLFLLDPSEEKPS---WRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCL 617 (625)
Q Consensus 544 v~GG~~~~~~~~~~v~~~d~~~~~~~---W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~ 617 (625)
+.... ......|+.+|+. +.. |..+.... +.. .-.+.... ++.+++....++ ...+|++++
T Consensus 286 ~~s~~---~~~~~~l~~~d~~--~~~~~~~~~l~~~~--~~~-~l~~~~~~-~~~lv~~~~~dg----~~~l~~~~~ 349 (695)
T 2bkl_A 286 VLTDE---GAPRQRVFEVDPA--KPARASWKEIVPED--SSA-SLLSVSIV-GGHLSLEYLKDA----TSEVRVATL 349 (695)
T ss_dssp EEECT---TCTTCEEEEEBTT--BCSGGGCEEEECCC--SSC-EEEEEEEE-TTEEEEEEEETT----EEEEEEEET
T ss_pred EEECC---CCCCCEEEEEeCC--CCCccCCeEEecCC--CCC-eEEEEEEE-CCEEEEEEEECC----EEEEEEEeC
Confidence 55332 1225689999983 433 88875321 111 11222333 457777665443 244566554
No 238
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=88.35 E-value=21 Score=35.38 Aligned_cols=207 Identities=14% Similarity=0.081 Sum_probs=93.3
Q ss_pred cceeEEEEcCCEEEEEccCCCCC----ccccEEEEE-CCC-CCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCC
Q 048754 359 WGHTLSSLNGSWLVVFGGCGRQG----LLNDVFVLD-LDA-KQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDA 432 (625)
Q Consensus 359 ~~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~~d-~~t-~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~ 432 (625)
..|+++...++++|.+|-..... ...+...-. +.. .......+. .-..|+++...++.+|.+|--...
T Consensus 130 ~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va------~G~~hs~alt~~G~v~~wG~n~~G 203 (406)
T 4d9s_A 130 DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVA------AGAEHTAAVTEDGDLYGWGWGRYG 203 (406)
T ss_dssp SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEE------ECSSEEEEEETTSCEEEEECCTTS
T ss_pred hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEe------cCCCeEEEEeCCCCEEEeeCCCCC
Confidence 46788877777899998542211 111111100 000 000122222 224588888888899999842211
Q ss_pred Cc---eeceEEEEe-cC-CCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC--CCC
Q 048754 433 GV---LLSDTYLLD-LT-TDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD--EEP 505 (625)
Q Consensus 433 ~~---~~~~~~~~d-~~-~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~--~~~ 505 (625)
.. ...+...-. +. ........+. .-..|++++..++.+|.+|-............+......-. ...
T Consensus 204 qlG~g~~~~~~~p~~v~~~~~~~i~~va------~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~ 277 (406)
T 4d9s_A 204 NLGLGDRTDRLVPERVTSTGGEKMSMVA------CGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNS 277 (406)
T ss_dssp TTCSSSSCCEEEEEECCCSTTCCEEEEE------ECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTS
T ss_pred CCCCCCCCCcCccEEecccCCceEEEEE------ECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCC
Confidence 10 000111100 00 0001122222 23457888887889999984332111100011111111000 011
Q ss_pred ceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC---CCcEE---EEeCCCCCCCeEEEcCCCCC
Q 048754 506 QWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS---PSQLF---LLDPSEEKPSWRILNVPGQP 579 (625)
Q Consensus 506 ~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~---~~~v~---~~d~~~~~~~W~~v~~~~~~ 579 (625)
....+. .-..|+++...+++||.+|-...+..- ..+.. ...+. .......+.
T Consensus 278 ~v~~i~----------------~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~-~~~~v~~va----- 335 (406)
T 4d9s_A 278 FISQIS----------------GGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP-DDQKVVQVS----- 335 (406)
T ss_dssp CEEEEE----------------ECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCG-GGCCEEEEE-----
T ss_pred CEEEEE----------------ecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEecc-CCCcEEEEE-----
Confidence 122222 224678888878899999843322111 11111 11110 122333443
Q ss_pred CCCCCcceEEEECCcEEEEEcC
Q 048754 580 PKFAWGHSTCVVGGTRVLVLGG 601 (625)
Q Consensus 580 p~~r~~~~~~~~~~~~i~i~GG 601 (625)
.-..|++++..++.+|.+|-
T Consensus 336 --~G~~hs~alt~~G~v~~wG~ 355 (406)
T 4d9s_A 336 --CGWRHTLAVTERNNVFAWGR 355 (406)
T ss_dssp --ECSSEEEEEETTSCEEEEEC
T ss_pred --eCCCeEEEEeCCCCEEEecC
Confidence 23468888888889999984
No 239
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=88.31 E-value=21 Score=35.15 Aligned_cols=105 Identities=10% Similarity=0.110 Sum_probs=53.9
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
++..++.|+.+ ..+.+||+.+. .-...... . ...-.+.+...++.+++.|+.+ ..+.+||+.+.
T Consensus 108 ~~~~l~~~~~d-----g~i~iwd~~~~--~~~~~~~~--h-~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~~ 171 (420)
T 3vl1_A 108 QMRRFILGTTE-----GDIKVLDSNFN--LQREIDQA--H-VSEITKLKFFPSGEALISSSQD------MQLKIWSVKDG 171 (420)
T ss_dssp SSCEEEEEETT-----SCEEEECTTSC--EEEEETTS--S-SSCEEEEEECTTSSEEEEEETT------SEEEEEETTTC
T ss_pred CCCEEEEEECC-----CCEEEEeCCCc--ceeeeccc--c-cCccEEEEECCCCCEEEEEeCC------CeEEEEeCCCC
Confidence 44567777654 35889998876 44433211 1 1111223333344566666632 36888998665
Q ss_pred CCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 448 KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 448 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
..... +.. ...+ -.++....++.+++.|+.+ ..+.++|+.+
T Consensus 172 ~~~~~-~~~--h~~~--v~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~ 212 (420)
T 3vl1_A 172 SNPRT-LIG--HRAT--VTDIAIIDRGRNVLSASLD---------GTIRLWECGT 212 (420)
T ss_dssp CCCEE-EEC--CSSC--EEEEEEETTTTEEEEEETT---------SCEEEEETTT
T ss_pred cCceE-EcC--CCCc--EEEEEEcCCCCEEEEEcCC---------CcEEEeECCC
Confidence 42222 211 1111 1233344444666666653 4677888873
No 240
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=88.14 E-value=19 Score=34.45 Aligned_cols=107 Identities=11% Similarity=-0.058 Sum_probs=52.4
Q ss_pred CEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEc-CCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 369 SWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIE-GSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 369 ~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
+.+++.|+.++ .+.+||+.+.+... .+... .... .+..... ++.+++.|+.+ ..+.+||+.+.
T Consensus 85 ~~~l~~~~~dg-----~i~v~d~~~~~~~~-~~~~~---~~~i-~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~ 148 (366)
T 3k26_A 85 HPLLAVAGSRG-----IIRIINPITMQCIK-HYVGH---GNAI-NELKFHPRDPNLLLSVSKD------HALRLWNIQTD 148 (366)
T ss_dssp CEEEEEEETTC-----EEEEECTTTCCEEE-EEESC---CSCE-EEEEECSSCTTEEEEEETT------SCEEEEETTTT
T ss_pred CCEEEEecCCC-----EEEEEEchhceEee-eecCC---CCcE-EEEEECCCCCCEEEEEeCC------CeEEEEEeecC
Confidence 45777777543 68899988763222 22211 1111 1222222 44667767642 36888897654
Q ss_pred CCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 448 KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 448 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
.. -..+... ......-.++....++..++.|+.+ ..+.+||+.+
T Consensus 149 ~~-~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~ 192 (366)
T 3k26_A 149 TL-VAIFGGV-EGHRDEVLSADYDLLGEKIMSCGMD---------HSLKLWRINS 192 (366)
T ss_dssp EE-EEEECST-TSCSSCEEEEEECTTSSEEEEEETT---------SCEEEEESCS
T ss_pred eE-EEEeccc-ccccCceeEEEECCCCCEEEEecCC---------CCEEEEECCC
Confidence 31 1122100 0111111233333444566666653 5678888773
No 241
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=88.13 E-value=0.15 Score=39.72 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=32.3
Q ss_pred cccccC---CCCCCcccccccccccCc-hhHHHHhhhcccCchhhh
Q 048754 193 AQYFSG---GHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 193 ~~~~~~---~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~ 234 (625)
..+++. +..++++|+++++++|++ ++++|..+..++++++..
T Consensus 10 i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~ 55 (115)
T 4eet_B 10 FVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQ 55 (115)
T ss_dssp EEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCH
T ss_pred EEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCCh
Confidence 334466 667779999999999999 888888877777765533
No 242
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=88.03 E-value=32 Score=36.99 Aligned_cols=200 Identities=11% Similarity=0.061 Sum_probs=98.9
Q ss_pred CCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCC-------CCccccEEEEECCCCCCEEEEcCCC
Q 048754 332 DDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGR-------QGLLNDVFVLDLDAKQPTWIEVSGG 404 (625)
Q Consensus 332 ~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~-------~~~~~~~~~~d~~t~~~~W~~~~~~ 404 (625)
..++++|+.+ .+..... .+..+....+.. +++.||+..-... ......+|++++.+.+..=..+...
T Consensus 155 ~~i~v~dl~t--g~~~~~~---~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~ 228 (693)
T 3iuj_A 155 REIHLMDVES--KQPLETP---LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA 228 (693)
T ss_dssp EEEEEEETTT--CSEEEEE---EEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC
T ss_pred EEEEEEECCC--CCCCccc---cCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec
Confidence 3589999987 4554431 111122233344 6666665543211 1234568888887662211222221
Q ss_pred CCCC--CCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcC
Q 048754 405 APPL--PRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGG 481 (625)
Q Consensus 405 ~~p~--~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG 481 (625)
+. +....+.... +++.+++...... ..+.+|++|+++....|..+... .. .........++.||+...
T Consensus 229 --~~~~~~~~~~~~~SpDg~~l~~~~~~~~---~~~~i~~~d~~~~~~~~~~l~~~---~~-~~~~~~~~~g~~l~~~t~ 299 (693)
T 3iuj_A 229 --IPAQHHRYVGATVTEDDRFLLISAANST---SGNRLYVKDLSQENAPLLTVQGD---LD-ADVSLVDNKGSTLYLLTN 299 (693)
T ss_dssp --SGGGCCSEEEEEECTTSCEEEEEEESSS---SCCEEEEEETTSTTCCCEEEECS---SS-SCEEEEEEETTEEEEEEC
T ss_pred --CCCCCeEEEEEEEcCCCCEEEEEEccCC---CCcEEEEEECCCCCCceEEEeCC---CC-ceEEEEeccCCEEEEEEC
Confidence 11 2222222222 4444544332211 23689999987664458777531 11 112223334458888865
Q ss_pred CcCCCCcccccCceEEEEcCCCC-CceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEE
Q 048754 482 LAKSGHLRLRSGESYTIDLGDEE-PQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFL 560 (625)
Q Consensus 482 ~~~~~~~~~~~~~~~~~d~~~~~-~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~ 560 (625)
.+.. ...++.+|+++.. ..|+.+... ... .. .+...++.|++..-.+ ....+++
T Consensus 300 ~~~~------~~~l~~~d~~~~~~~~~~~l~~~------------~~~-~~--~~s~~g~~lv~~~~~~----g~~~l~~ 354 (693)
T 3iuj_A 300 RDAP------NRRLVTVDAANPGPAHWRDLIPE------------RQQ-VL--TVHSGSGYLFAEYMVD----ATARVEQ 354 (693)
T ss_dssp TTCT------TCEEEEEETTSCCGGGCEEEECC------------CSS-CE--EEEEETTEEEEEEEET----TEEEEEE
T ss_pred CCCC------CCEEEEEeCCCCCccccEEEecC------------CCC-EE--EEEEECCEEEEEEEEC----CeeEEEE
Confidence 4321 3688999987532 358876543 111 11 3333366665553221 1357899
Q ss_pred EeCCCCCCCeEEE
Q 048754 561 LDPSEEKPSWRIL 573 (625)
Q Consensus 561 ~d~~~~~~~W~~v 573 (625)
+++ +......+
T Consensus 355 ~d~--~g~~~~~l 365 (693)
T 3iuj_A 355 FDY--EGKRVREV 365 (693)
T ss_dssp ECT--TSCEEEEE
T ss_pred EEC--CCCeeEEe
Confidence 998 44444444
No 243
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=87.69 E-value=0.14 Score=40.12 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=25.9
Q ss_pred CCCCCcccccccccccCc-hhHHHHhhhcccCch
Q 048754 199 GHSPLSQHQDICGILQLS-DEVLAHNILSRLTPR 231 (625)
Q Consensus 199 ~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~ 231 (625)
+..++|+|+++++++||+ +|++|.++..+.+++
T Consensus 15 ~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~ 48 (109)
T 1n9l_A 15 DCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEG 48 (109)
T ss_dssp TCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTT
T ss_pred CCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCC
Confidence 455679999999999999 888887765555543
No 244
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=87.47 E-value=21 Score=34.26 Aligned_cols=162 Identities=7% Similarity=0.026 Sum_probs=73.7
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEccc-CCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSV-KSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.+++.||.+.. +.++|+.. ..|..... ..... ..-.+++...++..++.|+.++ .+.++|..+
T Consensus 27 ~g~~las~~~D~~------i~iw~~~~--~~~~~~~~~~~~h~-~~v~~~~~sp~g~~l~s~s~D~-----~v~iw~~~~ 92 (345)
T 3fm0_A 27 AGTLLASCGGDRR------IRIWGTEG--DSWICKSVLSEGHQ-RTVRKVAWSPCGNYLASASFDA-----TTCIWKKNQ 92 (345)
T ss_dssp TSSCEEEEETTSC------EEEEEEET--TEEEEEEEECSSCS-SCEEEEEECTTSSEEEEEETTS-----CEEEEEECC
T ss_pred CCCEEEEEcCCCe------EEEEEcCC--CcceeeeeeccccC-CcEEEEEECCCCCEEEEEECCC-----cEEEEEccC
Confidence 4556667765332 77888776 45542210 11111 1111222223445667777543 467777766
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCC-CCCCCCCCcceEEEEC
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPT-SWSPPSRLGHSLSVYG 472 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~-~~~p~~r~~~~~~~~~ 472 (625)
. .+..+........ .-.+.+...++.+++.|+.+ ..+.++|+.+.. .+..+.. ...... -.+++...
T Consensus 93 ~--~~~~~~~~~~h~~-~v~~v~~sp~~~~l~s~s~D------~~v~iwd~~~~~-~~~~~~~~~~h~~~--v~~~~~~p 160 (345)
T 3fm0_A 93 D--DFECVTTLEGHEN-EVKSVAWAPSGNLLATCSRD------KSVWVWEVDEED-EYECVSVLNSHTQD--VKHVVWHP 160 (345)
T ss_dssp C---EEEEEEECCCSS-CEEEEEECTTSSEEEEEETT------SCEEEEEECTTS-CEEEEEEECCCCSC--EEEEEECS
T ss_pred C--CeEEEEEccCCCC-CceEEEEeCCCCEEEEEECC------CeEEEEECCCCC-CeEEEEEecCcCCC--eEEEEECC
Confidence 6 4443321110111 11122222344566667643 257777875432 1322211 001111 11222333
Q ss_pred CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeec
Q 048754 473 RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECN 513 (625)
Q Consensus 473 ~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~ 513 (625)
++.+++.|+.+ ..+.+||.. ...|..+...
T Consensus 161 ~~~~l~s~s~d---------~~i~~w~~~--~~~~~~~~~~ 190 (345)
T 3fm0_A 161 SQELLASASYD---------DTVKLYREE--EDDWVCCATL 190 (345)
T ss_dssp SSSCEEEEETT---------SCEEEEEEE--TTEEEEEEEE
T ss_pred CCCEEEEEeCC---------CcEEEEEec--CCCEEEEEEe
Confidence 44667776653 456777776 4466655444
No 245
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=87.44 E-value=0.15 Score=43.22 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=33.6
Q ss_pred cccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhh
Q 048754 193 AQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVAS 235 (625)
Q Consensus 193 ~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~ 235 (625)
..+++.+..++++|+++++++|++ ++++|..+..++++.+...
T Consensus 53 i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~ 96 (167)
T 1v9y_A 53 AVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPA 96 (167)
T ss_dssp EEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTT
T ss_pred EEEECCCCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccch
Confidence 334577777889999999999999 7888888888777765443
No 246
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=87.37 E-value=23 Score=34.57 Aligned_cols=191 Identities=15% Similarity=0.143 Sum_probs=88.0
Q ss_pred EEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccc-eEEEE--cCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 371 LVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWH-SSCII--EGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 371 iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~-~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
.++.|+.+ ..+.++|+.++ .-...-....+...... ..+.+ .+..+++.|+.+ ..+.+||+...
T Consensus 172 ~l~s~s~D-----~~i~~wd~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D------~~v~~wd~~~~ 238 (380)
T 3iz6_a 172 RLITGSGD-----QTCVLWDVTTG--QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD------TTVRLWDLRIT 238 (380)
T ss_dssp CEEEECTT-----SCEEEECTTTC--CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT------SCEEEEETTTT
T ss_pred EEEEECCC-----CcEEEEEcCCC--cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC------CeEEEEECCCC
Confidence 45555543 35888999887 33322111111111111 12222 144677777743 35788887533
Q ss_pred CCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCC
Q 048754 448 KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPP 527 (625)
Q Consensus 448 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~ 527 (625)
...-..+.. ...+. .++....++..++.|+.+ ..+.++|+.+. . .+......... .....
T Consensus 239 ~~~~~~~~~--h~~~v--~~v~~~p~~~~l~s~s~D---------~~i~lwd~~~~--~--~~~~~~~~~~~---~~~~~ 298 (380)
T 3iz6_a 239 SRAVRTYHG--HEGDI--NSVKFFPDGQRFGTGSDD---------GTCRLFDMRTG--H--QLQVYNREPDR---NDNEL 298 (380)
T ss_dssp CCCCEEECC--CSSCC--CEEEECTTSSEEEEECSS---------SCEEEEETTTT--E--EEEEECCCCSS---SCCSS
T ss_pred CcceEEECC--cCCCe--EEEEEecCCCeEEEEcCC---------CeEEEEECCCC--c--EEEEecccccc---ccccc
Confidence 222223221 11111 234344455677777764 56788898732 2 22211000000 00000
Q ss_pred CccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCC--CCCcceEEEECCcEEEEEcCcCCC
Q 048754 528 PRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPK--FAWGHSTCVVGGTRVLVLGGHTGE 605 (625)
Q Consensus 528 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~--~r~~~~~~~~~~~~i~i~GG~~~~ 605 (625)
+ .-.++....++++++.|+. ...+.+||+ .+..-.... +.... ...-.++...+++..++.||.++.
T Consensus 299 ~-~v~~~~~s~~g~~l~~g~~------dg~i~vwd~--~~~~~~~~~--~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 299 P-IVTSVAFSISGRLLFAGYS------NGDCYVWDT--LLAEMVLNL--GTLQNSHEGRISCLGLSSDGSALCTGSWDKN 367 (380)
T ss_dssp C-SCSEEEECSSSSEEEEECT------TSCEEEEET--TTCCEEEEE--CCSCSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred C-ceEEEEECCCCCEEEEEEC------CCCEEEEEC--CCCceEEEE--ecccCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence 1 1123333336777777764 457889998 333322211 11111 111234445556788889987664
No 247
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=87.25 E-value=23 Score=34.46 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=14.3
Q ss_pred CCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 539 CGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 539 ~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
++++++.|+. ...+.+||+.
T Consensus 302 ~~~~l~~~~~------dg~i~iwd~~ 321 (397)
T 1sq9_A 302 SGETLCSAGW------DGKLRFWDVK 321 (397)
T ss_dssp SSSEEEEEET------TSEEEEEETT
T ss_pred CCCEEEEEeC------CCeEEEEEcC
Confidence 5677777774 3478899983
No 248
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=86.85 E-value=36 Score=39.45 Aligned_cols=145 Identities=10% Similarity=0.042 Sum_probs=67.4
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.||.+. .+.+||+.+.. .-..+ .. ..... .+++...+++.++.|+.+ ..+.++|+.++
T Consensus 626 ~~~~l~s~~~d~------~i~vw~~~~~~-~~~~~--~~-h~~~v-~~~~~s~~~~~l~s~~~d-----~~v~vwd~~~~ 689 (1249)
T 3sfz_A 626 DGQRIASCGADK------TLQVFKAETGE-KLLDI--KA-HEDEV-LCCAFSSDDSYIATCSAD-----KKVKIWDSATG 689 (1249)
T ss_dssp TSSEEEEEETTS------CEEEEETTTCC-EEEEE--CC-CSSCE-EEEEECTTSSEEEEEETT-----SEEEEEETTTC
T ss_pred CCCEEEEEeCCC------eEEEEECCCCC-EEEEe--cc-CCCCE-EEEEEecCCCEEEEEeCC-----CeEEEEECCCC
Confidence 455666666433 38899987631 11222 11 11111 122222344566666643 35889999887
Q ss_pred CCEEE-EcCCCCCCCCCccceEEEE-c--CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEE
Q 048754 395 QPTWI-EVSGGAPPLPRSWHSSCII-E--GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSV 470 (625)
Q Consensus 395 ~~~W~-~~~~~~~p~~r~~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~ 470 (625)
+.. .+.. .... -.++.+ . +..+++.|+.+ ..+.++|+.+..... .+.. ...+ -.+++.
T Consensus 690 --~~~~~~~~---~~~~--v~~~~~~~~~~~~~l~sg~~d------~~v~vwd~~~~~~~~-~~~~--h~~~--v~~~~~ 751 (1249)
T 3sfz_A 690 --KLVHTYDE---HSEQ--VNCCHFTNKSNHLLLATGSND------FFLKLWDLNQKECRN-TMFG--HTNS--VNHCRF 751 (1249)
T ss_dssp --CEEEEEEC---CSSC--EEEEEECSSSSCCEEEEEETT------SCEEEEETTSSSEEE-EECC--CSSC--EEEEEE
T ss_pred --ceEEEEcC---CCCc--EEEEEEecCCCceEEEEEeCC------CeEEEEECCCcchhh-eecC--CCCC--EEEEEE
Confidence 332 2221 1111 122233 2 22345555422 357888976654211 1111 1111 122333
Q ss_pred ECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 471 YGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 471 ~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
..++.+++.|+.+ ..+.++|+.+
T Consensus 752 sp~~~~l~s~s~d---------g~v~vwd~~~ 774 (1249)
T 3sfz_A 752 SPDDELLASCSAD---------GTLRLWDVRS 774 (1249)
T ss_dssp CSSTTEEEEEESS---------SEEEEEEGGG
T ss_pred ecCCCEEEEEECC---------CeEEEEeCCC
Confidence 3344566666653 5677888763
No 249
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=86.80 E-value=25 Score=34.40 Aligned_cols=145 Identities=14% Similarity=0.018 Sum_probs=71.4
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecC
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
..++ .++.|+.+ ..+.+||+.+.+.... +.. ... .-.+.+...++.+++.|+.+ ..+.+||+.
T Consensus 215 ~~~~-~~~~~~~~-----g~i~~~d~~~~~~~~~-~~~---~~~-~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~ 277 (425)
T 1r5m_A 215 VDDD-KFVIPGPK-----GAIFVYQITEKTPTGK-LIG---HHG-PISVLEFNDTNKLLLSASDD------GTLRIWHGG 277 (425)
T ss_dssp EETT-EEEEECGG-----GCEEEEETTCSSCSEE-ECC---CSS-CEEEEEEETTTTEEEEEETT------SCEEEECSS
T ss_pred cCCC-EEEEEcCC-----CeEEEEEcCCCceeee-ecc---CCC-ceEEEEECCCCCEEEEEcCC------CEEEEEECC
Confidence 3455 45666543 4689999987632222 211 111 11233333444566666532 357888876
Q ss_pred CCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC
Q 048754 446 TDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 446 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~ 525 (625)
+....... .. . ...-.++....++ +++.|+.+ ..+.+||+.+ ...+....
T Consensus 278 ~~~~~~~~-~~--~--~~~i~~~~~~~~~-~l~~~~~d---------~~i~i~d~~~----~~~~~~~~----------- 327 (425)
T 1r5m_A 278 NGNSQNCF-YG--H--SQSIVSASWVGDD-KVISCSMD---------GSVRLWSLKQ----NTLLALSI----------- 327 (425)
T ss_dssp SBSCSEEE-CC--C--SSCEEEEEEETTT-EEEEEETT---------SEEEEEETTT----TEEEEEEE-----------
T ss_pred CCccceEe-cC--C--CccEEEEEECCCC-EEEEEeCC---------CcEEEEECCC----CcEeEecc-----------
Confidence 64432222 11 1 1112344445555 66666543 5788899873 22332220
Q ss_pred CCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 526 PPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 526 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
.....-.++....++++++.|+. ...+.+||+
T Consensus 328 ~~~~~i~~~~~s~~~~~l~~~~~------dg~i~i~~~ 359 (425)
T 1r5m_A 328 VDGVPIFAGRISQDGQKYAVAFM------DGQVNVYDL 359 (425)
T ss_dssp CTTCCEEEEEECTTSSEEEEEET------TSCEEEEEC
T ss_pred cCCccEEEEEEcCCCCEEEEEEC------CCeEEEEEC
Confidence 01111123333336677777774 346788887
No 250
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=86.76 E-value=0.2 Score=40.15 Aligned_cols=41 Identities=10% Similarity=-0.028 Sum_probs=31.9
Q ss_pred ccccC---CCCCCcccccccccccCc-hhHHHHhhhcccCchhhh
Q 048754 194 QYFSG---GHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 194 ~~~~~---~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~ 234 (625)
.++|. +..++++|+++++++|++ ++++|..+..++++++..
T Consensus 11 ~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~ 55 (128)
T 3t50_A 11 LITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDP 55 (128)
T ss_dssp EEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCH
T ss_pred EEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCH
Confidence 34466 567779999999999999 888888887777765443
No 251
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=86.65 E-value=15 Score=34.81 Aligned_cols=124 Identities=5% Similarity=-0.008 Sum_probs=61.8
Q ss_pred cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEE
Q 048754 419 EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTI 498 (625)
Q Consensus 419 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~ 498 (625)
.++.+|+.+... ..+++||+++.. ...+.. .....-++++...++++|+........ ...++++
T Consensus 54 ~~g~l~~~~~~~------~~i~~~d~~~~~--~~~~~~---~~~~~~~~i~~~~dg~l~v~~~~~~~~-----~~~i~~~ 117 (333)
T 2dg1_A 54 RQGQLFLLDVFE------GNIFKINPETKE--IKRPFV---SHKANPAAIKIHKDGRLFVCYLGDFKS-----TGGIFAA 117 (333)
T ss_dssp TTSCEEEEETTT------CEEEEECTTTCC--EEEEEE---CSSSSEEEEEECTTSCEEEEECTTSSS-----CCEEEEE
T ss_pred CCCCEEEEECCC------CEEEEEeCCCCc--EEEEee---CCCCCcceEEECCCCcEEEEeCCCCCC-----CceEEEE
Confidence 455688766421 368999987655 554421 111122344444455787765322111 2578899
Q ss_pred EcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEE
Q 048754 499 DLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRIL 573 (625)
Q Consensus 499 d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v 573 (625)
|+++ .....+... ..............++++|+.............+|++|+ ++.+...+
T Consensus 118 d~~~--~~~~~~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~--~~~~~~~~ 177 (333)
T 2dg1_A 118 TENG--DNLQDIIED-----------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSP--DFRTVTPI 177 (333)
T ss_dssp CTTS--CSCEEEECS-----------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECT--TSCCEEEE
T ss_pred eCCC--CEEEEEEcc-----------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeC--CCCEEEEe
Confidence 9874 333322111 011111223333346778876432111112457999998 45555554
No 252
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.60 E-value=0.088 Score=41.61 Aligned_cols=47 Identities=4% Similarity=0.009 Sum_probs=35.8
Q ss_pred hccccccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCch
Q 048754 185 CNQQYDQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPR 231 (625)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~ 231 (625)
+.........++|.+..++++|+++++++|++ ++++|.++..++++.
T Consensus 12 il~~~~~~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~ 59 (115)
T 3b33_A 12 ILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHA 59 (115)
T ss_dssp HHHHCSSEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEE
T ss_pred HHhhcCceEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCcc
Confidence 33444555556688888889999999999999 788888887776653
No 253
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=86.54 E-value=20 Score=33.08 Aligned_cols=190 Identities=8% Similarity=0.054 Sum_probs=91.8
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.||+.+... ...+++||... .....+..... ..-+.++...++++|+..... +.+++||+...
T Consensus 88 ~g~l~v~~~~~-----~~~i~~~d~~g--~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~~g~ 152 (286)
T 1q7f_A 88 SGDIIVTERSP-----THQIQIYNQYG--QFVRKFGATIL---QHPRGVTVDNKGRIIVVECKV-----MRVIIFDQNGN 152 (286)
T ss_dssp TTEEEEEECGG-----GCEEEEECTTS--CEEEEECTTTC---SCEEEEEECTTSCEEEEETTT-----TEEEEECTTSC
T ss_pred CCeEEEEcCCC-----CCEEEEECCCC--cEEEEecCccC---CCceEEEEeCCCCEEEEECCC-----CEEEEEcCCCC
Confidence 67899887421 12388888543 22232311111 111334443455688875422 46889997654
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
....+... .....-...+.-.++.+|+.... .+.+.+||++... ...+...+. ...-.++++-.++
T Consensus 153 --~~~~~~~~--~~~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~--~~~~~~~g~--~~~p~~i~~d~~G 218 (286)
T 1q7f_A 153 --VLHKFGCS--KHLEFPNGVVVNDKQEIFISDNR------AHCVKVFNYEGQY--LRQIGGEGI--TNYPIGVGINSNG 218 (286)
T ss_dssp --EEEEEECT--TTCSSEEEEEECSSSEEEEEEGG------GTEEEEEETTCCE--EEEESCTTT--SCSEEEEEECTTC
T ss_pred --EEEEeCCC--CccCCcEEEEECCCCCEEEEECC------CCEEEEEcCCCCE--EEEEccCCc--cCCCcEEEECCCC
Confidence 33333211 11111123333344578886532 2478899974322 333332110 0111334444455
Q ss_pred EEEEEcCCcCCCCcccccC-ceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSG-ESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLH 553 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~-~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 553 (625)
.+|+..... + .+.+||.+ ...-..+... .+.. .........++++||.. .
T Consensus 219 ~l~v~~~~~---------~~~i~~~~~~--g~~~~~~~~~-----------~~~~-~~~~i~~~~~g~l~vs~-~----- 269 (286)
T 1q7f_A 219 EILIADNHN---------NFNLTIFTQD--GQLISALESK-----------VKHA-QCFDVALMDDGSVVLAS-K----- 269 (286)
T ss_dssp CEEEEECSS---------SCEEEEECTT--SCEEEEEEES-----------SCCS-CEEEEEEETTTEEEEEE-T-----
T ss_pred CEEEEeCCC---------CEEEEEECCC--CCEEEEEccc-----------CCCC-cceeEEECCCCcEEEEC-C-----
Confidence 888875432 3 78889875 2222233221 0111 11233334478888873 2
Q ss_pred CCCcEEEEeC
Q 048754 554 SPSQLFLLDP 563 (625)
Q Consensus 554 ~~~~v~~~d~ 563 (625)
.+.|.+|++
T Consensus 270 -~~~v~v~~~ 278 (286)
T 1q7f_A 270 -DYRLYIYRY 278 (286)
T ss_dssp -TTEEEEEEC
T ss_pred -CCeEEEEEc
Confidence 246777776
No 254
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=86.53 E-value=27 Score=34.67 Aligned_cols=183 Identities=12% Similarity=0.067 Sum_probs=90.8
Q ss_pred EECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECC
Q 048754 313 AAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 313 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
..++.+++.|+.+. .+.++|+.+. +....- . .....-.+..+.++ .++.|+.++ .+.+||+.
T Consensus 180 ~~~~~~l~sg~~dg------~i~vwd~~~~--~~~~~~-~---~h~~~v~~l~~~~~-~l~s~s~dg-----~i~vwd~~ 241 (435)
T 1p22_A 180 QYDERVIITGSSDS------TVRVWDVNTG--EMLNTL-I---HHCEAVLHLRFNNG-MMVTCSKDR-----SIAVWDMA 241 (435)
T ss_dssp ECCSSEEEEEETTS------CEEEEESSSC--CEEEEE-C---CCCSCEEEEECCTT-EEEEEETTS-----CEEEEECS
T ss_pred EECCCEEEEEcCCC------eEEEEECCCC--cEEEEE-c---CCCCcEEEEEEcCC-EEEEeeCCC-----cEEEEeCC
Confidence 34666777777543 3889998773 322111 1 11112233334454 666666443 58889987
Q ss_pred CCCCEE-EEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE
Q 048754 393 AKQPTW-IEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY 471 (625)
Q Consensus 393 t~~~~W-~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 471 (625)
+.+... ...... ....-.++..+++ .++.|+.+ ..+.+||+.+..... .+.. ...+ -.++..
T Consensus 242 ~~~~~~~~~~~~~----~~~~v~~~~~~~~-~l~s~~~d------g~i~vwd~~~~~~~~-~~~~--~~~~---v~~~~~ 304 (435)
T 1p22_A 242 SPTDITLRRVLVG----HRAAVNVVDFDDK-YIVSASGD------RTIKVWNTSTCEFVR-TLNG--HKRG---IACLQY 304 (435)
T ss_dssp SSSCCEEEEEECC----CSSCEEEEEEETT-EEEEEETT------SEEEEEETTTCCEEE-EEEC--CSSC---EEEEEE
T ss_pred CCCCceeeeEecC----CCCcEEEEEeCCC-EEEEEeCC------CeEEEEECCcCcEEE-EEcC--CCCc---EEEEEe
Confidence 763221 111111 1111223344554 55555532 367889976654211 1111 1111 223344
Q ss_pred CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC
Q 048754 472 GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG 551 (625)
Q Consensus 472 ~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 551 (625)
++ .+++.|+.+ ..+.+||+.+. ..+... ........++.. ++..++.|+.
T Consensus 305 ~~-~~l~~g~~d---------g~i~iwd~~~~----~~~~~~------------~~h~~~v~~~~~-~~~~l~sg~~--- 354 (435)
T 1p22_A 305 RD-RLVVSGSSD---------NTIRLWDIECG----ACLRVL------------EGHEELVRCIRF-DNKRIVSGAY--- 354 (435)
T ss_dssp ET-TEEEEEETT---------SCEEEEETTTC----CEEEEE------------CCCSSCEEEEEC-CSSEEEEEET---
T ss_pred CC-CEEEEEeCC---------CeEEEEECCCC----CEEEEE------------eCCcCcEEEEEe-cCCEEEEEeC---
Confidence 44 566666643 57889998742 233332 111122344455 6777888775
Q ss_pred CCCCCcEEEEeC
Q 048754 552 LHSPSQLFLLDP 563 (625)
Q Consensus 552 ~~~~~~v~~~d~ 563 (625)
...|.+||+
T Consensus 355 ---dg~i~vwd~ 363 (435)
T 1p22_A 355 ---DGKIKVWDL 363 (435)
T ss_dssp ---TSCEEEEEH
T ss_pred ---CCcEEEEEC
Confidence 346788887
No 255
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=86.52 E-value=21 Score=33.40 Aligned_cols=146 Identities=11% Similarity=0.060 Sum_probs=67.1
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCce-EEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEW-RRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W-~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.+++.|+.+. .+.++|+.+. .- ..+. . ..... .++....++..++.|+.+ ..+.++|+.+
T Consensus 24 ~~~~l~s~~~dg------~v~lWd~~~~--~~~~~~~--~-~~~~v-~~~~~~~~~~~l~s~s~d-----~~i~vwd~~~ 86 (304)
T 2ynn_A 24 TEPWVLTTLYSG------RVELWNYETQ--VEVRSIQ--V-TETPV-RAGKFIARKNWIIVGSDD-----FRIRVFNYNT 86 (304)
T ss_dssp SSSEEEEEETTS------EEEEEETTTT--EEEEEEE--C-CSSCE-EEEEEEGGGTEEEEEETT-----SEEEEEETTT
T ss_pred CCCEEEEEcCCC------cEEEEECCCC--ceeEEee--c-cCCcE-EEEEEeCCCCEEEEECCC-----CEEEEEECCC
Confidence 344555666432 2778888762 22 2221 1 11111 122223334466666643 3588899887
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC-
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG- 472 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~- 472 (625)
++. -..+... ...-.+.+...++.+++.|+.+ ..+.++|+.+....-..+.. .... -.++.+.
T Consensus 87 ~~~-~~~~~~h----~~~v~~~~~~~~~~~l~sgs~D------~~v~lWd~~~~~~~~~~~~~--h~~~---v~~v~~~p 150 (304)
T 2ynn_A 87 GEK-VVDFEAH----PDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTFEG--HEHF---VMCVAFNP 150 (304)
T ss_dssp CCE-EEEEECC----SSCEEEEEECSSSSEEEEEETT------SCEEEEEGGGTTEEEEEECC--CCSC---EEEEEECT
T ss_pred CcE-EEEEeCC----CCcEEEEEEcCCCCEEEEECCC------CeEEEEECCCCcchhhhhcc--cCCc---EEEEEECC
Confidence 732 2222211 1111222233344566666643 25777887553211111221 1111 1222332
Q ss_pred -CcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 473 -RTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 473 -~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
++.+++.|+.+ ..+.++|+..
T Consensus 151 ~~~~~l~sgs~D---------~~v~iwd~~~ 172 (304)
T 2ynn_A 151 KDPSTFASGCLD---------RTVKVWSLGQ 172 (304)
T ss_dssp TCTTEEEEEETT---------SEEEEEETTC
T ss_pred CCCCEEEEEeCC---------CeEEEEECCC
Confidence 33567777764 5677888863
No 256
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=86.27 E-value=0.11 Score=41.36 Aligned_cols=35 Identities=6% Similarity=0.153 Sum_probs=28.1
Q ss_pred ccCCCCCCcccccccccccCc-hhHHHHhhhcccCc
Q 048754 196 FSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTP 230 (625)
Q Consensus 196 ~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~ 230 (625)
++.+..++++|+++++++||+ ++++|..+..++++
T Consensus 18 ~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~ 53 (120)
T 3mqq_A 18 LSRDRVIEDCNDELAAIFRCARADLIGRSFEVLYPS 53 (120)
T ss_dssp EEETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSS
T ss_pred EecCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCC
Confidence 455666779999999999999 88888777666655
No 257
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=86.27 E-value=0.17 Score=41.94 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=31.3
Q ss_pred ccCCCCCCcccccccccccCc-hhHHH--HhhhcccCchhhhhHHhH
Q 048754 196 FSGGHSPLSQHQDICGILQLS-DEVLA--HNILSRLTPRDVASIGSV 239 (625)
Q Consensus 196 ~~~~~~~~~~n~~~~~~~g~~-~e~~~--~~~~~~~~~~~~~~~~~~ 239 (625)
++.....+++|+++++++|++ +++.+ ..+...+||+|...+...
T Consensus 25 ~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~ 71 (142)
T 3mr0_A 25 WNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAA 71 (142)
T ss_dssp ECTTTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHH
T ss_pred EEcCCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHH
Confidence 366777889999999999999 44432 246778999998766443
No 258
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=86.23 E-value=22 Score=33.27 Aligned_cols=225 Identities=11% Similarity=0.108 Sum_probs=102.2
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCce-EEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEW-RRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W-~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.+++.|+.+. .+.+||+.+. +- ..+. . ..... .++....++..++.|+.++ .+.+||+.+
T Consensus 76 ~~~~l~s~~~d~------~i~vwd~~~~--~~~~~~~--~-~~~~v-~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~ 138 (312)
T 4ery_A 76 DSNLLVSASDDK------TLKIWDVSSG--KCLKTLK--G-HSNYV-FCCNFNPQSNLIVSGSFDE-----SVRIWDVKT 138 (312)
T ss_dssp TSSEEEEEETTS------EEEEEETTTC--CEEEEEE--C-CSSCE-EEEEECSSSSEEEEEETTS-----CEEEEETTT
T ss_pred CCCEEEEECCCC------EEEEEECCCC--cEEEEEc--C-CCCCE-EEEEEcCCCCEEEEEeCCC-----cEEEEECCC
Confidence 445666666532 3788888763 22 1221 1 11111 1222223345666776543 588999987
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG 472 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 472 (625)
.+. -..+.... . . -..+.+ .++.+++.|+.+ ..+.+||+.+.... ..+... ...+ -..+....
T Consensus 139 ~~~-~~~~~~~~---~-~-v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~-~~~~~~-~~~~--~~~~~~~~ 202 (312)
T 4ery_A 139 GKC-LKTLPAHS---D-P-VSAVHFNRDGSLIVSSSYD------GLCRIWDTASGQCL-KTLIDD-DNPP--VSFVKFSP 202 (312)
T ss_dssp CCE-EEEECCCS---S-C-EEEEEECTTSSEEEEEETT------SCEEEEETTTCCEE-EEECCS-SCCC--EEEEEECT
T ss_pred CEE-EEEecCCC---C-c-EEEEEEcCCCCEEEEEeCC------CcEEEEECCCCcee-eEEecc-CCCc--eEEEEECC
Confidence 621 22232211 1 1 122223 344566666643 35788897654311 112111 1111 11222333
Q ss_pred CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCC
Q 048754 473 RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGL 552 (625)
Q Consensus 473 ~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~ 552 (625)
++..++.|+.+ ..+.+||+.+. + .+.... +...............++.+++.|+.
T Consensus 203 ~~~~l~~~~~d---------~~i~iwd~~~~--~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~sg~~---- 257 (312)
T 4ery_A 203 NGKYILAATLD---------NTLKLWDYSKG--K--CLKTYT--------GHKNEKYCIFANFSVTGGKWIVSGSE---- 257 (312)
T ss_dssp TSSEEEEEETT---------TEEEEEETTTT--E--EEEEEC--------SSCCSSSCCCEEEECSSSCEEEECCT----
T ss_pred CCCEEEEEcCC---------CeEEEEECCCC--c--EEEEEE--------ecCCceEEEEEEEEeCCCcEEEEECC----
Confidence 44566666543 57888998732 2 222220 00111111122333346677777775
Q ss_pred CCCCcEEEEeCCCCCCCe-EEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCC
Q 048754 553 HSPSQLFLLDPSEEKPSW-RILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEE 606 (625)
Q Consensus 553 ~~~~~v~~~d~~~~~~~W-~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~ 606 (625)
...|.+||+. +..= ..+. + ... .-.++...+++.+++.++...++
T Consensus 258 --dg~i~vwd~~--~~~~~~~~~--~--h~~-~v~~~~~~p~~~~l~s~~~~~d~ 303 (312)
T 4ery_A 258 --DNLVYIWNLQ--TKEIVQKLQ--G--HTD-VVISTACHPTENIIASAALENDK 303 (312)
T ss_dssp --TSCEEEEETT--TCCEEEEEC--C--CSS-CEEEEEECSSSSEEEEEECTTTC
T ss_pred --CCEEEEEECC--Cchhhhhhh--c--cCC-cEEEEeecCcCCceEEEEccCCc
Confidence 3478899983 3322 1221 1 111 11233344456777777654443
No 259
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=85.91 E-value=0.52 Score=46.68 Aligned_cols=151 Identities=13% Similarity=0.072 Sum_probs=62.1
Q ss_pred EECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECC
Q 048754 313 AAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 313 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
+.++.||+.+.. ..++++|..+-+..|+.-. . +. . +..++.++.+|+.|+.+ ..++.+|..
T Consensus 7 v~~~~v~~gs~d-------g~v~a~d~~tG~~~W~~~~--~-~~-~---s~p~~~~g~~~v~~s~d-----g~l~a~d~~ 67 (369)
T 2hz6_A 7 LPETLLFVSTLD-------GSLHAVSKRTGSIKWTLKE--D-PV-L---QVPTHVEEPAFLPDPND-----GSLYTLGSK 67 (369)
T ss_dssp -CTTEEEEEETT-------SEEEEEETTTCCEEEEEEC--C-CS-C---CCC-----CCEEECTTT-----CCEEEC---
T ss_pred eeCCEEEEEcCC-------CEEEEEECCCCCEEEEecC--C-Cc-e---ecceEcCCCEEEEeCCC-----CEEEEEECC
Confidence 446677765532 2389999887667888542 1 11 1 11222345577776533 358999998
Q ss_pred CCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC
Q 048754 393 AKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG 472 (625)
Q Consensus 393 t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 472 (625)
+++..|..-... +... ..+.+...++.+|+ |+ .-..++.+|+.+.+..|+.-... ..+ .+. .
T Consensus 68 tG~~~w~~~~~~--~~~~-~~sp~~~~~~~v~~-g~------~dg~v~a~D~~tG~~~w~~~~~~---~~~----~~p-~ 129 (369)
T 2hz6_A 68 NNEGLTKLPFTI--PELV-QASPCRSSDGILYM-GK------KQDIWYVIDLLTGEKQQTLSSAF---ADS----LSP-S 129 (369)
T ss_dssp --CCSEECSCCH--HHHH-TTCSCC-----CCC-CE------EEEEEEEECCC---------------------------
T ss_pred CCceeeeeeccC--cccc-ccCceEecCCEEEE-Ee------CCCEEEEEECCCCcEEEEecCCC---ccc----ccc-c
Confidence 876667632211 1000 11111212444544 33 12468999998888888753321 011 111 3
Q ss_pred CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEe
Q 048754 473 RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQL 510 (625)
Q Consensus 473 ~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~ 510 (625)
++.+|+ |+. ...++.+|+.+....|+.-
T Consensus 130 ~~~v~~-~~~---------dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 130 TSLLYL-GRT---------EYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp ---EEE-EEE---------EEEEECCCSSSSSCCCEEE
T ss_pred CCEEEE-Eec---------CCEEEEEECCCCCEEEeEe
Confidence 324444 332 1467788887666678753
No 260
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=85.81 E-value=31 Score=36.99 Aligned_cols=194 Identities=12% Similarity=0.090 Sum_probs=90.5
Q ss_pred CCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCC--------CccccEEEEECCCCCCEEEEcCC
Q 048754 332 DDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQ--------GLLNDVFVLDLDAKQPTWIEVSG 403 (625)
Q Consensus 332 ~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~~d~~t~~~~W~~~~~ 403 (625)
..++++|+.+ .+.... ...+.... .+.+-..+++.++++..... .....++++++.+.+..-..+..
T Consensus 147 ~~i~v~dl~t--g~~~~~--~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~ 221 (695)
T 2bkl_A 147 AVLHVIDVDS--GEWSKV--DVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE 221 (695)
T ss_dssp CEEEEEETTT--CCBCSS--CCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC
T ss_pred EEEEEEECCC--CCCcCC--cccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe
Confidence 4599999987 343200 11111111 22232334455555554322 23456999999877321122222
Q ss_pred CCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCc
Q 048754 404 GAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLA 483 (625)
Q Consensus 404 ~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~ 483 (625)
.. ..+....+.....+++.+++...... ..+.+|.++..+. .|..+... . . .....+..++ .+|+.....
T Consensus 222 ~~-~~~~~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~--~~~~l~~~--~-~-~~~~~~~~~g-~l~~~s~~~ 291 (695)
T 2bkl_A 222 RT-GDPTTFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEK--DFRLLVKG--V-G-AKYEVHAWKD-RFYVLTDEG 291 (695)
T ss_dssp CC-CCTTCEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCS--SCEEEEEC--S-S-CCEEEEEETT-EEEEEECTT
T ss_pred cC-CCCEEEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCC--ceEEeecC--C-C-ceEEEEecCC-cEEEEECCC
Confidence 11 11122222222233333343332221 2357888875444 37777532 1 1 1122233455 466654321
Q ss_pred CCCCcccccCceEEEEcCCCC-CceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEe
Q 048754 484 KSGHLRLRSGESYTIDLGDEE-PQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLD 562 (625)
Q Consensus 484 ~~~~~~~~~~~~~~~d~~~~~-~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d 562 (625)
. . ...++.+|+++.. ..|+.+... .+......+...++++++....+ ....+|.++
T Consensus 292 ~-~-----~~~l~~~d~~~~~~~~~~~l~~~-------------~~~~~l~~~~~~~~~lv~~~~~d----g~~~l~~~~ 348 (695)
T 2bkl_A 292 A-P-----RQRVFEVDPAKPARASWKEIVPE-------------DSSASLLSVSIVGGHLSLEYLKD----ATSEVRVAT 348 (695)
T ss_dssp C-T-----TCEEEEEBTTBCSGGGCEEEECC-------------CSSCEEEEEEEETTEEEEEEEET----TEEEEEEEE
T ss_pred C-C-----CCEEEEEeCCCCCccCCeEEecC-------------CCCCeEEEEEEECCEEEEEEEEC----CEEEEEEEe
Confidence 1 1 3688999987421 238877532 11111122233378887776532 245788888
Q ss_pred C
Q 048754 563 P 563 (625)
Q Consensus 563 ~ 563 (625)
+
T Consensus 349 ~ 349 (695)
T 2bkl_A 349 L 349 (695)
T ss_dssp T
T ss_pred C
Confidence 7
No 261
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=85.18 E-value=24 Score=32.84 Aligned_cols=102 Identities=9% Similarity=-0.015 Sum_probs=50.5
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEec-C---CEEEEEecCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMP-C---GRIIIFGGSIA 550 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~---~~l~v~GG~~~ 550 (625)
++++.|+.+ ..+.++|+.+....|..+..+ ......-.++.+. + +.+++.|+.+
T Consensus 171 ~~l~sgs~D---------~~v~lwd~~~~~~~~~~~~~l------------~~H~~~V~~v~~sp~~~~~~~las~s~D- 228 (297)
T 2pm7_B 171 RKFVTGGAD---------NLVKIWKYNSDAQTYVLESTL------------EGHSDWVRDVAWSPTVLLRSYMASVSQD- 228 (297)
T ss_dssp CEEEEEETT---------SCEEEEEEETTTTEEEEEEEE------------CCCSSCEEEEEECCCCSSSEEEEEEETT-
T ss_pred ceEEEEcCC---------CcEEEEEEcCCCceEEEEEEe------------cCCCCceEEEEECCCCCCceEEEEEECC-
Confidence 466666653 456677766433345554443 1111222334443 2 3777777753
Q ss_pred CCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 551 GLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 551 ~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
..+.++|+......|........ .....-.++...+++.+++.||.++
T Consensus 229 -----~~v~iWd~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~las~~~D~ 276 (297)
T 2pm7_B 229 -----RTCIIWTQDNEQGPWKKTLLKEE-KFPDVLWRASWSLSGNVLALSGGDN 276 (297)
T ss_dssp -----SCEEEEEESSTTSCCEEEESSSS-CCSSCEEEEEECSSSCCEEEEETTS
T ss_pred -----CcEEEEEeCCCCCccceeeeecc-cCCCcEEEEEECCCCCEEEEEcCCC
Confidence 35677777323345654332111 1111122333445667888888655
No 262
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=85.15 E-value=22 Score=34.50 Aligned_cols=159 Identities=10% Similarity=0.036 Sum_probs=71.0
Q ss_pred CeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCc
Q 048754 333 DTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRS 411 (625)
Q Consensus 333 ~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~ 411 (625)
.++++|+.+ .+...+... .....+....- ++++|++............+|++|+.+. .+..+... .+....
T Consensus 169 ~l~~~d~~~--g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~-~~~~~~ 240 (396)
T 3c5m_A 169 RLIKVDIET--GELEVIHQD---TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS--NVRKIKEH-AEGESC 240 (396)
T ss_dssp EEEEEETTT--CCEEEEEEE---SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC--CCEESSCC-CTTEEE
T ss_pred eEEEEECCC--CcEEeeccC---CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC--ceeEeecc-CCCccc
Confidence 488888876 455555311 11111111111 2444555442111112357999999877 66666541 111111
Q ss_pred cceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC-CcEEEEEcCCcCC----
Q 048754 412 WHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG-RTKVLMFGGLAKS---- 485 (625)
Q Consensus 412 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~---- 485 (625)
...... +++.+++. +..... ....++++|+.+.. ...+.. .+ . +...... +++++++.+....
T Consensus 241 -~~~~~spdg~~l~~~-~~~~~~-~~~~l~~~d~~~g~--~~~l~~--~~--~--~~~~~s~~dg~~l~~~~~~~p~~~~ 309 (396)
T 3c5m_A 241 -THEFWIPDGSAMAYV-SYFKGQ-TDRVIYKANPETLE--NEEVMV--MP--P--CSHLMSNFDGSLMVGDGCDAPVDVA 309 (396)
T ss_dssp -EEEEECTTSSCEEEE-EEETTT-CCEEEEEECTTTCC--EEEEEE--CC--S--EEEEEECSSSSEEEEEECCC-----
T ss_pred -cceEECCCCCEEEEE-ecCCCC-ccceEEEEECCCCC--eEEeee--CC--C--CCCCccCCCCceEEEecCCcceeec
Confidence 111222 34444443 222111 11348999987654 555432 12 1 1233333 4455555432210
Q ss_pred C---CcccccCceEEEEcCCCCCceeEeee
Q 048754 486 G---HLRLRSGESYTIDLGDEEPQWKQLEC 512 (625)
Q Consensus 486 ~---~~~~~~~~~~~~d~~~~~~~W~~~~~ 512 (625)
. ........++++|+.+ .....+..
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~--~~~~~l~~ 337 (396)
T 3c5m_A 310 DADSYNIENDPFLYVLNTKA--KSAQKLCK 337 (396)
T ss_dssp -----CCCCCCEEEEEETTT--TBCCEEEE
T ss_pred cccccccCCCCcEEEEeccc--CceEEccC
Confidence 0 0000136799999884 35555543
No 263
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=85.13 E-value=0.24 Score=38.85 Aligned_cols=46 Identities=15% Similarity=0.019 Sum_probs=34.5
Q ss_pred cccccccccccCCCCCCcccccccccccC---c-hhHHHHhhhcccCchh
Q 048754 187 QQYDQSAQYFSGGHSPLSQHQDICGILQL---S-DEVLAHNILSRLTPRD 232 (625)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~n~~~~~~~g~---~-~e~~~~~~~~~~~~~~ 232 (625)
........++|.+..++++|+++++++|+ + ++++|..+..++++..
T Consensus 22 ~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~ 71 (118)
T 2w0n_A 22 QSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD 71 (118)
T ss_dssp HCCCCCCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH
T ss_pred hhccccEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCcccccCchh
Confidence 33344445568888888999999999997 5 7788888877776543
No 264
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=84.98 E-value=0.35 Score=42.45 Aligned_cols=44 Identities=7% Similarity=0.028 Sum_probs=34.6
Q ss_pred ccccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCch
Q 048754 188 QYDQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPR 231 (625)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~ 231 (625)
.......++|.+..+.++|+++++++|++ ++++|.++..++++.
T Consensus 88 ~~~~gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~ 132 (190)
T 2jhe_A 88 ALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGF 132 (190)
T ss_dssp HCSSCEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTC
T ss_pred hCCCcEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCC
Confidence 33444445688888889999999999999 778888888777754
No 265
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=84.91 E-value=22 Score=32.23 Aligned_cols=150 Identities=9% Similarity=0.006 Sum_probs=71.2
Q ss_pred EEEEcCCEEEE-EccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEE
Q 048754 363 LSSLNGSWLVV-FGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYL 441 (625)
Q Consensus 363 ~~~~~~~~iyv-~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 441 (625)
++.-.++++|+ .... .+.+++||..+. ....+.... ...-++.+...++.+|+... . ..+++
T Consensus 29 i~~~~~g~l~v~~~~~-----~~~i~~~~~~~~--~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~---~----~~i~~ 91 (270)
T 1rwi_B 29 VAVDSAGNVYVTSEGM-----YGRVVKLATGST--GTTVLPFNG---LYQPQGLAVDGAGTVYVTDF---N----NRVVT 91 (270)
T ss_dssp EEECTTCCEEEEECSS-----SCEEEEECC-------EECCCCS---CCSCCCEEECTTCCEEEEET---T----TEEEE
T ss_pred eEECCCCCEEEEccCC-----CCcEEEecCCCc--ccceEeeCC---cCCcceeEECCCCCEEEEcC---C----CEEEE
Confidence 33334456888 5332 245888888766 433332211 11112333333456888654 1 36888
Q ss_pred EecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCC
Q 048754 442 LDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQ 521 (625)
Q Consensus 442 ~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~ 521 (625)
||++... ...+..... ..-+++++..++++|+.... ...+++++.. +.........
T Consensus 92 ~d~~~~~--~~~~~~~~~---~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~--~~~~~~~~~~-------- 147 (270)
T 1rwi_B 92 LAAGSNN--QTVLPFDGL---NYPEGLAVDTQGAVYVADRG---------NNRVVKLAAG--SKTQTVLPFT-------- 147 (270)
T ss_dssp ECTTCSC--CEECCCCSC---SSEEEEEECTTCCEEEEEGG---------GTEEEEECTT--CCSCEECCCC--------
T ss_pred EeCCCce--EeeeecCCc---CCCcceEECCCCCEEEEECC---------CCEEEEEECC--CceeEeeccc--------
Confidence 9976543 333332111 12234444445578887432 2567788655 2222221111
Q ss_pred CCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 522 SAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 522 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
............+++||+.... ...|++||+.
T Consensus 148 -----~~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~ 179 (270)
T 1rwi_B 148 -----GLNDPDGVAVDNSGNVYVTDTD------NNRVVKLEAE 179 (270)
T ss_dssp -----SCCSCCCEEECTTCCEEEEEGG------GTEEEEECTT
T ss_pred -----cCCCceeEEEeCCCCEEEEECC------CCEEEEEecC
Confidence 0011122333336778887543 3578999983
No 266
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=84.80 E-value=25 Score=32.77 Aligned_cols=225 Identities=10% Similarity=0.029 Sum_probs=105.2
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.||+..-.. +.+++||+.+ .....+..+ .+. .+.+...++++++..+ +.+++||+.++
T Consensus 24 ~~~l~~~d~~~------~~i~~~d~~~--~~~~~~~~~----~~~-~~i~~~~dG~l~v~~~-------~~l~~~d~~~g 83 (297)
T 3g4e_A 24 SNSLLFVDIPA------KKVCRWDSFT--KQVQRVTMD----APV-SSVALRQSGGYVATIG-------TKFCALNWKEQ 83 (297)
T ss_dssp TTEEEEEETTT------TEEEEEETTT--CCEEEEECS----SCE-EEEEEBTTSSEEEEET-------TEEEEEETTTT
T ss_pred CCEEEEEECCC------CEEEEEECCC--CcEEEEeCC----Cce-EEEEECCCCCEEEEEC-------CeEEEEECCCC
Confidence 46788776432 2389999876 333333211 111 2233333445666532 36899999888
Q ss_pred CCEEEEcCCCC--CCCCCccceEEEEcCCEEEEEcCcCCCC------ceeceEEEEecCCCCCceEEcCCCCCCCCCCcc
Q 048754 395 QPTWIEVSGGA--PPLPRSWHSSCIIEGSKLVVSGGCTDAG------VLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGH 466 (625)
Q Consensus 395 ~~~W~~~~~~~--~p~~r~~~~~~~~~~~~iyv~GG~~~~~------~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~ 466 (625)
++..+.... .+..+.. ..+...++.+|+. .+.... .....++.++++. . ...+... .. ...
T Consensus 84 --~~~~~~~~~~~~~~~~~~-di~~d~dG~l~~~-~~~~~~~~~~~~~~~~~l~~~d~~g-~--~~~~~~~-~~---~pn 152 (297)
T 3g4e_A 84 --SAVVLATVDNDKKNNRFN-DGKVDPAGRYFAG-TMAEETAPAVLERHQGALYSLFPDH-H--VKKYFDQ-VD---ISN 152 (297)
T ss_dssp --EEEEEEECCTTCSSEEEE-EEEECTTSCEEEE-EEECCSBTTBCCTTCEEEEEECTTS-C--EEEEEEE-ES---BEE
T ss_pred --cEEEEEecCCCCCCCCCC-CEEECCCCCEEEe-cCCcccccccccCCCcEEEEEECCC-C--EEEEeec-cc---ccc
Confidence 776554321 1222222 2222334467763 211110 1224678887532 2 3332211 11 112
Q ss_pred eEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeE---eeeccccCcCCCCCCCCCCccceEEEEecCCEE
Q 048754 467 SLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQ---LECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542 (625)
Q Consensus 467 ~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~---~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 542 (625)
+.+...++ .||+.... ...+++||++..+..... +... .........++.-.+++|
T Consensus 153 gi~~spdg~~lyv~~~~---------~~~i~~~~~d~~~G~~~~~~~~~~~-----------~~~~~~p~g~~~d~~G~l 212 (297)
T 3g4e_A 153 GLDWSLDHKIFYYIDSL---------SYSVDAFDYDLQTGQISNRRSVYKL-----------EKEEQIPDGMCIDAEGKL 212 (297)
T ss_dssp EEEECTTSCEEEEEEGG---------GTEEEEEEECTTTCCEEEEEEEEEC-----------CGGGCEEEEEEEBTTSCE
T ss_pred ceEEcCCCCEEEEecCC---------CCcEEEEeccCCCCcccCcEEEEEC-----------CCCCCCCCeeEECCCCCE
Confidence 34443333 67777443 367888887421223221 1111 000111123333346788
Q ss_pred EEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEEC---CcEEEEEcCcC
Q 048754 543 IIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVG---GTRVLVLGGHT 603 (625)
Q Consensus 543 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~---~~~i~i~GG~~ 603 (625)
||.... ...|++||+ ++.+....- ..|.. ...++.+. .+.|||.....
T Consensus 213 wva~~~------~~~v~~~d~--~tG~~~~~i---~~p~~--~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 213 WVACYN------GGRVIRLDP--VTGKRLQTV---KLPVD--KTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEEEET------TTEEEEECT--TTCCEEEEE---ECSSS--BEEEEEEESGGGCEEEEEEBCT
T ss_pred EEEEcC------CCEEEEEcC--CCceEEEEE---ECCCC--CceEEEEeCCCCCEEEEEcCCc
Confidence 887532 246999999 445543322 12221 12333442 25788876544
No 267
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=84.43 E-value=32 Score=33.66 Aligned_cols=107 Identities=13% Similarity=0.078 Sum_probs=51.2
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+. .+.+||+.+ ..-... -.... ..-.+++...++..++.|+.+ ..+.+||+.+.
T Consensus 108 ~~~~l~~~~~dg------~i~iwd~~~--~~~~~~--~~~h~-~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~ 171 (420)
T 3vl1_A 108 QMRRFILGTTEG------DIKVLDSNF--NLQREI--DQAHV-SEITKLKFFPSGEALISSSQD-----MQLKIWSVKDG 171 (420)
T ss_dssp SSCEEEEEETTS------CEEEECTTS--CEEEEE--TTSSS-SCEEEEEECTTSSEEEEEETT-----SEEEEEETTTC
T ss_pred CCCEEEEEECCC------CEEEEeCCC--cceeee--ccccc-CccEEEEECCCCCEEEEEeCC-----CeEEEEeCCCC
Confidence 455666776532 388888876 232222 11111 111222323344566666643 36889998876
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
+... .+... ...-.+.+...++..++.|+.+ ..+.+||+.+..
T Consensus 172 ~~~~-~~~~h----~~~v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~ 214 (420)
T 3vl1_A 172 SNPR-TLIGH----RATVTDIAIIDRGRNVLSASLD------GTIRLWECGTGT 214 (420)
T ss_dssp CCCE-EEECC----SSCEEEEEEETTTTEEEEEETT------SCEEEEETTTTE
T ss_pred cCce-EEcCC----CCcEEEEEEcCCCCEEEEEcCC------CcEEEeECCCCc
Confidence 3221 22111 1111223333344566666532 257778876543
No 268
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=84.30 E-value=0.19 Score=42.42 Aligned_cols=43 Identities=9% Similarity=0.031 Sum_probs=33.8
Q ss_pred ccccc-CCCCCCcccccccccccCchhHHHHhhhcccCchhhhhH
Q 048754 193 AQYFS-GGHSPLSQHQDICGILQLSDEVLAHNILSRLTPRDVASI 236 (625)
Q Consensus 193 ~~~~~-~~~~~~~~n~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~ 236 (625)
..+++ .+..++++|+++++++|++ +++|..+.+++++.+...+
T Consensus 30 i~~~d~~~~~i~~~N~~~~~~~g~~-~~~G~~~~~~~~~~~~~~~ 73 (158)
T 3k3c_A 30 LVGLEGPDHRFVAVNAAYRGFSPLL-DTVGQPAREVYPELEGQQI 73 (158)
T ss_dssp EEEEETTTTEEEEECHHHHHHCTTC-CSTTSBHHHHSGGGGGTTH
T ss_pred EEEEECCCcEeHHHHHHHHHHcCCc-hhcCCcHHHhCCchhHHHH
Confidence 33456 6677779999999999999 9999888888887654433
No 269
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=84.00 E-value=29 Score=40.29 Aligned_cols=185 Identities=8% Similarity=-0.022 Sum_probs=87.5
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++..++.|+.+. .+.+|++.+.. ....+ .. ..... .+++...+++.++.||.+ ..+.++|..++
T Consensus 972 ~g~~l~~g~~~g------~i~i~d~~~~~-~~~~~--~~-h~~~v-~~l~~s~dg~~l~s~~~d-----g~i~vwd~~~~ 1035 (1249)
T 3sfz_A 972 HLEYVAFGDEDG------AIKIIELPNNR-VFSSG--VG-HKKAV-RHIQFTADGKTLISSSED-----SVIQVWNWQTG 1035 (1249)
T ss_dssp TSSEEEEEETTS------CCEEEETTTTS-CEEEC--CC-CSSCC-CCEEECSSSSCEEEECSS-----SBEEEEETTTT
T ss_pred CCCEEEEEcCCC------CEEEEEcCCCc-eeeec--cc-CCCce-EEEEECCCCCEEEEEcCC-----CEEEEEECCCC
Confidence 445555565432 37888887631 22222 11 11111 122222344566666643 35889999887
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
....+... ...-.+.....++ .++.|+.+ ..+.+||+.+....... .. ...+ -.+++...++
T Consensus 1036 --~~~~~~~~----~~~v~~~~~~~~~-~l~~~~~d------g~v~vwd~~~~~~~~~~-~~--~~~~--v~~~~~s~d~ 1097 (1249)
T 3sfz_A 1036 --DYVFLQAH----QETVKDFRLLQDS-RLLSWSFD------GTVKVWNVITGRIERDF-TC--HQGT--VLSCAISSDA 1097 (1249)
T ss_dssp --EEECCBCC----SSCEEEEEECSSS-EEEEEESS------SEEEEEETTTTCCCEEE-EC--CSSC--CCCEEECSSS
T ss_pred --ceEEEecC----CCcEEEEEEcCCC-cEEEEECC------CcEEEEECCCCceeEEE-cc--cCCc--EEEEEECCCC
Confidence 65544321 1111222233343 44555532 36888998665532222 11 1111 1233344444
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEE-EecCCEEEEEecCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAV-SMPCGRIIIFGGSIAGLH 553 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~-~~~~~~l~v~GG~~~~~~ 553 (625)
.+++.|+.+ ..+.+||+.+. ..+... ........++ ...++++++.|+.+
T Consensus 1098 ~~l~s~s~d---------~~v~iwd~~~~----~~~~~l------------~~h~~~v~~~~~s~dg~~lat~~~d---- 1148 (1249)
T 3sfz_A 1098 TKFSSTSAD---------KTAKIWSFDLL----SPLHEL------------KGHNGCVRCSAFSLDGILLATGDDN---- 1148 (1249)
T ss_dssp SSCEEECCS---------SCCCEECSSSS----SCSBCC------------CCCSSCEEEEEECSSSSEEEEEETT----
T ss_pred CEEEEEcCC---------CcEEEEECCCc----ceeeee------------ccCCCcEEEEEECCCCCEEEEEeCC----
Confidence 666776653 45667777632 122211 1111112223 33367788887753
Q ss_pred CCCcEEEEeCC
Q 048754 554 SPSQLFLLDPS 564 (625)
Q Consensus 554 ~~~~v~~~d~~ 564 (625)
..+.+||+.
T Consensus 1149 --g~i~vwd~~ 1157 (1249)
T 3sfz_A 1149 --GEIRIWNVS 1157 (1249)
T ss_dssp --SCCCEEESS
T ss_pred --CEEEEEECC
Confidence 346778873
No 270
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=83.79 E-value=37 Score=33.87 Aligned_cols=64 Identities=11% Similarity=-0.012 Sum_probs=33.8
Q ss_pred CEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 369 SWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 369 ~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
++.++.|+.+ ..+.+||+.+.......+... .....+.+ ..++ .+++.|+.+ ..+.+||+.+..
T Consensus 210 ~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~h---~~~v~~~~-~sd~-~~l~s~~~d------~~v~vwd~~~~~ 273 (450)
T 2vdu_B 210 HQFIITSDRD-----EHIKISHYPQCFIVDKWLFGH---KHFVSSIC-CGKD-YLLLSAGGD------DKIFAWDWKTGK 273 (450)
T ss_dssp CEEEEEEETT-----SCEEEEEESCTTCEEEECCCC---SSCEEEEE-ECST-TEEEEEESS------SEEEEEETTTCC
T ss_pred CcEEEEEcCC-----CcEEEEECCCCceeeeeecCC---CCceEEEE-ECCC-CEEEEEeCC------CeEEEEECCCCc
Confidence 6677777754 368889988763222222221 11111222 2234 566666632 367888876544
No 271
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=83.21 E-value=56 Score=35.44 Aligned_cols=214 Identities=11% Similarity=0.020 Sum_probs=98.0
Q ss_pred eEEEeccCCCCceEEcccCCCC---CCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC----CCEEE---EcC-
Q 048754 334 TFVLNLDAANPEWRRVSVKSSP---PGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK----QPTWI---EVS- 402 (625)
Q Consensus 334 ~~~~~~~~~~~~W~~~~~~~~p---~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~----~~~W~---~~~- 402 (625)
+++||..+ .++......... ....-++.+.-.++.|+|.. .. .-+++||..+. ...+. ...
T Consensus 394 L~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT-~~-----~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 465 (758)
T 3ott_A 394 INRYDYAT--RQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWIST-CL-----GGIFVVDKHKLMQSTSGQYIAEQNYSV 465 (758)
T ss_dssp EEEEETTT--TEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEE-SS-----SCEEEEEHHHHHHCCSSEEECSEEECG
T ss_pred HhhcCcCC--CcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEE-CC-----CceEEEccccccccCCcceeccccccc
Confidence 78898876 567655321111 11122333433456677742 21 13778886531 00232 111
Q ss_pred CCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCC
Q 048754 403 GGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGL 482 (625)
Q Consensus 403 ~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~ 482 (625)
....+.. .-.+.+.-.++.+++.||.. +-+++||+.+.. +..+.....+....-.+++.-.++.|++-. .
T Consensus 466 ~~~l~~~-~i~~i~~d~~g~lWi~~~t~------~Gl~~~d~~~~~--~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~ 535 (758)
T 3ott_A 466 HNGLSGM-FINQIIPDNEGNVWVLLYNN------KGIDKINPRTRE--VTKLFADELTGEKSPNYLLCDEDGLLWVGF-H 535 (758)
T ss_dssp GGTCSCS-CEEEEEECTTSCEEEEETTC------SSEEEEETTTTE--EEEECTTTSCGGGCEEEEEECTTSCEEEEE-T
T ss_pred ccccccc-eeeeEEEcCCCCEEEEccCC------CCcEEEeCCCCc--eEEecCCCcCCCcccceEEECCCCCEEEEe-c
Confidence 0011111 11223333445788866632 247889986654 776643212111111233333445787642 1
Q ss_pred cCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEe
Q 048754 483 AKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLD 562 (625)
Q Consensus 483 ~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d 562 (625)
.-+.+||+.+ .++...... ..|.. ...+.+ ..++.|++.. ..-+.+||
T Consensus 536 ----------~Gl~~~~~~~--~~~~~~~~~----------gl~~~-~i~~i~-~~~g~lWi~t--------~~Gl~~~~ 583 (758)
T 3ott_A 536 ----------GGVMRINPKD--ESQQSISFG----------SFSNN-EILSMT-CVKNSIWVST--------TNGLWIID 583 (758)
T ss_dssp ----------TEEEEECC----CCCCBCCCC----------C---C-CEEEEE-EETTEEEEEE--------SSCEEEEE
T ss_pred ----------CceEEEecCC--CceEEeccc----------CCCcc-ceEEEE-ECCCCEEEEC--------CCCeEEEc
Confidence 4577888873 344333211 11211 122333 3377888863 23588999
Q ss_pred CCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 563 PSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 563 ~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
+ .+.+..... .|...+. .++....+.-+.|||.++
T Consensus 584 ~--~~~~~~~~~----~~~~~~~-~~~~~~~~G~l~fG~~~G 618 (758)
T 3ott_A 584 R--KTMDARQQN----MTNKRFT-SLLFDPKEDCVYLGGADG 618 (758)
T ss_dssp T--TTCCEEEC------CCCCCS-EEEEETTTTEEEEECBSE
T ss_pred C--CCceeEEec----CCCCcee-eeEEECCCCcEEEecCCc
Confidence 9 455554432 2223333 333333235566777654
No 272
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=83.01 E-value=31 Score=32.41 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=14.8
Q ss_pred ecCCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 537 MPCGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 537 ~~~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
..++++++.|+.+ ..+.+||+
T Consensus 224 s~~~~~l~s~s~D------g~i~iwd~ 244 (340)
T 4aow_A 224 SPDGSLCASGGKD------GQAMLWDL 244 (340)
T ss_dssp CTTSSEEEEEETT------CEEEEEET
T ss_pred CCCCCEEEEEeCC------CeEEEEEe
Confidence 3467788888753 46778887
No 273
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=82.93 E-value=35 Score=32.84 Aligned_cols=175 Identities=15% Similarity=0.171 Sum_probs=83.5
Q ss_pred EEEEEccCCCCCccccEEEEECCCCCCEEE-EcCCCCCCCCCccceEEEE--c-CCEEEEEcCcCCCCceeceEEEEecC
Q 048754 370 WLVVFGGCGRQGLLNDVFVLDLDAKQPTWI-EVSGGAPPLPRSWHSSCII--E-GSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 370 ~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~p~~r~~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
..++.|+.+ ..+.++|+.+. +.. .+... .... .++.+ . ++..++.|+.+ ..+.++|+.
T Consensus 167 ~~l~t~s~D-----~~v~lwd~~~~--~~~~~~~~h---~~~v--~~~~~~~~~~g~~l~sgs~D------g~v~~wd~~ 228 (354)
T 2pbi_B 167 MQILTASGD-----GTCALWDVESG--QLLQSFHGH---GADV--LCLDLAPSETGNTFVSGGCD------KKAMVWDMR 228 (354)
T ss_dssp SEEEEEETT-----SEEEEEETTTC--CEEEEEECC---SSCE--EEEEECCCSSCCEEEEEETT------SCEEEEETT
T ss_pred CEEEEEeCC-----CcEEEEeCCCC--eEEEEEcCC---CCCe--EEEEEEeCCCCCEEEEEeCC------CeEEEEECC
Confidence 344555533 35888999877 332 22211 1111 11222 1 23566767643 367888976
Q ss_pred CCCCceEE-cCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCC
Q 048754 446 TDKPMWRE-IPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAV 524 (625)
Q Consensus 446 ~~~~~W~~-~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~ 524 (625)
+.. ... +.. ...+ -.++....++.+++.|+.+ ..+.+||+... . .+....
T Consensus 229 ~~~--~~~~~~~--h~~~--v~~v~~~p~~~~l~s~s~D---------~~v~lwd~~~~--~--~~~~~~---------- 279 (354)
T 2pbi_B 229 SGQ--CVQAFET--HESD--VNSVRYYPSGDAFASGSDD---------ATCRLYDLRAD--R--EVAIYS---------- 279 (354)
T ss_dssp TCC--EEEEECC--CSSC--EEEEEECTTSSEEEEEETT---------SCEEEEETTTT--E--EEEEEC----------
T ss_pred CCc--EEEEecC--CCCC--eEEEEEeCCCCEEEEEeCC---------CeEEEEECCCC--c--EEEEEc----------
Confidence 654 322 211 1111 1223333344677777753 56788898732 2 222220
Q ss_pred CCCCccceEEEEe-cCCEEEEEecCCCCCCCCCcEEEEeCCCCCCC-eEEEcCCCCCCCCCCcceEEEECCcEEEEEcCc
Q 048754 525 VPPPRLDHVAVSM-PCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPS-WRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGH 602 (625)
Q Consensus 525 ~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~-W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~ 602 (625)
.........++.+ .++.+++.|+. ...+.+||+. +.. -..+. + ....-.++...+++..++.|+.
T Consensus 280 ~~~~~~~~~~~~~s~~g~~l~~g~~------d~~i~vwd~~--~~~~~~~l~--~---h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 280 KESIIFGASSVDFSLSGRLLFAGYN------DYTINVWDVL--KGSRVSILF--G---HENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEET------TSCEEEEETT--TCSEEEEEC--C---CSSCEEEEEECTTSSCEEEEET
T ss_pred CCCcccceeEEEEeCCCCEEEEEEC------CCcEEEEECC--CCceEEEEE--C---CCCcEEEEEECCCCCEEEEEcC
Confidence 0111222333333 36677777764 3478889983 332 11221 1 1111223444456778888886
Q ss_pred CC
Q 048754 603 TG 604 (625)
Q Consensus 603 ~~ 604 (625)
++
T Consensus 347 D~ 348 (354)
T 2pbi_B 347 DH 348 (354)
T ss_dssp TS
T ss_pred CC
Confidence 65
No 274
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=82.82 E-value=0.66 Score=36.07 Aligned_cols=43 Identities=7% Similarity=0.004 Sum_probs=31.7
Q ss_pred cccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhh
Q 048754 191 QSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDV 233 (625)
Q Consensus 191 ~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~ 233 (625)
....+++.+..++++|+++++++|++ ++++|..+..+.++++.
T Consensus 18 ~~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~ 61 (124)
T 3lyx_A 18 DAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDT 61 (124)
T ss_dssp SEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTH
T ss_pred ceEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchh
Confidence 33335577777889999999999999 77887777755555443
No 275
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=82.79 E-value=36 Score=32.95 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=31.2
Q ss_pred EEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE--cCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 317 RLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL--NGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 317 ~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
.+++.|+.+. .+.+||+.+... -..+. . ....-.+..+ .+.++++.|+.++ .+.+||+.+.
T Consensus 157 ~~~~~~~~~~------~v~~~d~~~~~~-~~~~~--~---~~~~v~~~~~~~~~~~ll~~~~~dg-----~i~i~d~~~~ 219 (408)
T 4a11_B 157 CLVAVGTRGP------KVQLCDLKSGSC-SHILQ--G---HRQEILAVSWSPRYDYILATASADS-----RVKLWDVRRA 219 (408)
T ss_dssp CEEEEEESSS------SEEEEESSSSCC-CEEEC--C---CCSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTCS
T ss_pred cEEEEEcCCC------eEEEEeCCCcce-eeeec--C---CCCcEEEEEECCCCCcEEEEEcCCC-----cEEEEECCCC
Confidence 3566665432 388999876321 12221 1 1111122222 2334777777543 5888998765
No 276
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=82.56 E-value=31 Score=32.00 Aligned_cols=234 Identities=10% Similarity=0.017 Sum_probs=111.3
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.||+.+.... .+++||+.+ . ...+.. +. ..-.+++.-.++++|+.... ...+++||+.++
T Consensus 39 g~~l~~~~~~~~------~i~~~~~~~--~-~~~~~~---~~-~~~~~l~~~~dg~l~v~~~~-----~~~i~~~d~~~g 100 (296)
T 3e5z_A 39 RSAVIFSDVRQN------RTWAWSDDG--Q-LSPEMH---PS-HHQNGHCLNKQGHLIACSHG-----LRRLERQREPGG 100 (296)
T ss_dssp GTEEEEEEGGGT------EEEEEETTS--C-EEEEES---SC-SSEEEEEECTTCCEEEEETT-----TTEEEEECSTTC
T ss_pred CCEEEEEeCCCC------EEEEEECCC--C-eEEEEC---CC-CCcceeeECCCCcEEEEecC-----CCeEEEEcCCCC
Confidence 445888775422 389999877 3 444421 11 11123333345567776532 135899999877
Q ss_pred CCEEEEcCCC--CCCCCCccceEEEEcCCEEEEE----cCcCC-------CCceeceEEEEecCCCCCceEEcCCCCCCC
Q 048754 395 QPTWIEVSGG--APPLPRSWHSSCIIEGSKLVVS----GGCTD-------AGVLLSDTYLLDLTTDKPMWREIPTSWSPP 461 (625)
Q Consensus 395 ~~~W~~~~~~--~~p~~r~~~~~~~~~~~~iyv~----GG~~~-------~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~ 461 (625)
+...+... ..+..+. ...+...++.+|+. |.... .......++.|++. .. ...+... ..
T Consensus 101 --~~~~~~~~~~~~~~~~~-~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~-~~- 172 (296)
T 3e5z_A 101 --EWESIADSFEGKKLNSP-NDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--LSAPIRD-RV- 172 (296)
T ss_dssp --CEEEEECEETTEECCCC-CCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--EEEEECC-CS-
T ss_pred --cEEEEeeccCCCCCCCC-CCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC--EEEeecC-CC-
Confidence 55544321 0011111 22333445578885 33110 01112478888865 33 4443321 11
Q ss_pred CCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCce-eEeeeccccCcCCCCCCCCCCccceEEEEecCC
Q 048754 462 SRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQW-KQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG 540 (625)
Q Consensus 462 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W-~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~ 540 (625)
...+.+...++++++.... ...+++||+.. ..+. ....... .....| ..++.-.++
T Consensus 173 --~~~gi~~s~dg~~lv~~~~---------~~~i~~~~~~~-~g~~~~~~~~~~--------~~~~~p---~~i~~d~~G 229 (296)
T 3e5z_A 173 --KPNGLAFLPSGNLLVSDTG---------DNATHRYCLNA-RGETEYQGVHFT--------VEPGKT---DGLRVDAGG 229 (296)
T ss_dssp --SEEEEEECTTSCEEEEETT---------TTEEEEEEECS-SSCEEEEEEEEC--------CSSSCC---CSEEEBTTS
T ss_pred --CCccEEECCCCCEEEEeCC---------CCeEEEEEECC-CCcCcCCCeEee--------CCCCCC---CeEEECCCC
Confidence 1133444444455544332 26788998862 2233 1111100 000111 123334477
Q ss_pred EEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEE-CCc-EEEEEcCcCCCCCccCceEEEEcc
Q 048754 541 RIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVV-GGT-RVLVLGGHTGEEWVLNELHELCLA 618 (625)
Q Consensus 541 ~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~-~i~i~GG~~~~~~~~~d~~~~~~~ 618 (625)
+|||.. .+.|.+||+ +......+.. |.. -.+++.. .++ .||+-.. +.+|+|++.
T Consensus 230 ~l~v~~--------~~~v~~~~~--~g~~~~~~~~----~~~--~~~~~f~~~d~~~L~v~t~--------~~l~~~~~~ 285 (296)
T 3e5z_A 230 LIWASA--------GDGVHVLTP--DGDELGRVLT----PQT--TSNLCFGGPEGRTLYMTVS--------TEFWSIETN 285 (296)
T ss_dssp CEEEEE--------TTEEEEECT--TSCEEEEEEC----SSC--CCEEEEESTTSCEEEEEET--------TEEEEEECS
T ss_pred CEEEEc--------CCeEEEECC--CCCEEEEEEC----CCC--ceeEEEECCCCCEEEEEcC--------CeEEEEEcc
Confidence 888876 236899998 3333444432 222 1223332 333 4555432 358888886
Q ss_pred CCC
Q 048754 619 SKQ 621 (625)
Q Consensus 619 ~~~ 621 (625)
+..
T Consensus 286 ~~~ 288 (296)
T 3e5z_A 286 VRG 288 (296)
T ss_dssp CCB
T ss_pred ccc
Confidence 653
No 277
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=82.14 E-value=35 Score=32.32 Aligned_cols=68 Identities=13% Similarity=0.050 Sum_probs=33.6
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEE----EEcCCEEEEEccCCCCCccccEEEEEC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLS----SLNGSWLVVFGGCGRQGLLNDVFVLDL 391 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~----~~~~~~iyv~GG~~~~~~~~~~~~~d~ 391 (625)
+.+++.|+.+. .+.+||+.+.......+........+.-.+.+ ...++..++.|+.+ ..+.+||+
T Consensus 129 ~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~ 197 (357)
T 3i2n_A 129 APEIVTGSRDG------TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN-----GDIKLFDL 197 (357)
T ss_dssp CCEEEEEETTS------CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT-----SEEEEEET
T ss_pred ccEEEEEeCCC------eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC-----CeEEEEEC
Confidence 34555565432 38889987642233433211111111222222 11344566666643 36899999
Q ss_pred CCC
Q 048754 392 DAK 394 (625)
Q Consensus 392 ~t~ 394 (625)
.+.
T Consensus 198 ~~~ 200 (357)
T 3i2n_A 198 RNM 200 (357)
T ss_dssp TTT
T ss_pred ccC
Confidence 887
No 278
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=81.85 E-value=0.39 Score=37.75 Aligned_cols=39 Identities=13% Similarity=0.073 Sum_probs=29.6
Q ss_pred CCCcccccccccccCc-hhHHHH-hhhcccCchhhhhHHhH
Q 048754 201 SPLSQHQDICGILQLS-DEVLAH-NILSRLTPRDVASIGSV 239 (625)
Q Consensus 201 ~~~~~n~~~~~~~g~~-~e~~~~-~~~~~~~~~~~~~~~~~ 239 (625)
.+.|+|+++++++||+ +++.+. .+..++||+|...+...
T Consensus 15 ~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~ 55 (115)
T 3h9w_A 15 AFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNF 55 (115)
T ss_dssp EEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHH
T ss_pred cEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHH
Confidence 3458999999999999 666653 35678999998776443
No 279
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=81.61 E-value=60 Score=34.67 Aligned_cols=147 Identities=13% Similarity=0.055 Sum_probs=68.3
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEE-EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWI-EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
.++.+++.|+.++ .+.++|+.+. .-. .+... .... .+.+...++..++.|+.+ ..+.++|..
T Consensus 440 ~~g~~l~sgs~Dg-----~v~vwd~~~~--~~~~~~~~h---~~~v-~~~~~s~~~~~l~s~s~D------~~i~iwd~~ 502 (694)
T 3dm0_A 440 SDGQFALSGSWDG-----ELRLWDLAAG--VSTRRFVGH---TKDV-LSVAFSLDNRQIVSASRD------RTIKLWNTL 502 (694)
T ss_dssp TTSSEEEEEETTS-----EEEEEETTTT--EEEEEEECC---SSCE-EEEEECTTSSCEEEEETT------SCEEEECTT
T ss_pred CCCCEEEEEeCCC-----cEEEEECCCC--cceeEEeCC---CCCE-EEEEEeCCCCEEEEEeCC------CEEEEEECC
Confidence 3445667777543 6888998877 332 22211 1111 122222344556666643 256677753
Q ss_pred CCCCceEEcCCCCCCCCCCcceEEEEC-Cc--EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCC
Q 048754 446 TDKPMWREIPTSWSPPSRLGHSLSVYG-RT--KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQS 522 (625)
Q Consensus 446 ~~~~~W~~~~~~~~p~~r~~~~~~~~~-~~--~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~ 522 (625)
... .+..... ....+..-.++.+. ++ .+++.|+.+ ..+.++|+.+ .+ .+...
T Consensus 503 ~~~-~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d---------~~v~vwd~~~--~~--~~~~~--------- 557 (694)
T 3dm0_A 503 GEC-KYTISEG--GEGHRDWVSCVRFSPNTLQPTIVSASWD---------KTVKVWNLSN--CK--LRSTL--------- 557 (694)
T ss_dssp SCE-EEEECSS--TTSCSSCEEEEEECSCSSSCEEEEEETT---------SCEEEEETTT--CC--EEEEE---------
T ss_pred CCc-ceeeccC--CCCCCCcEEEEEEeCCCCcceEEEEeCC---------CeEEEEECCC--Cc--EEEEE---------
Confidence 321 1222111 11111112233332 21 356666653 5678889873 22 22222
Q ss_pred CCCCCCccce-EEEEecCCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 523 AVVPPPRLDH-VAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 523 ~~~p~~r~~~-~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
....... ++....++++++.||.+ ..|.++|+.
T Consensus 558 ---~~h~~~v~~v~~spdg~~l~sg~~D------g~i~iwd~~ 591 (694)
T 3dm0_A 558 ---AGHTGYVSTVAVSPDGSLCASGGKD------GVVLLWDLA 591 (694)
T ss_dssp ---CCCSSCEEEEEECTTSSEEEEEETT------SBCEEEETT
T ss_pred ---cCCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECC
Confidence 1111112 23333467788888753 467788883
No 280
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=81.43 E-value=0.48 Score=34.92 Aligned_cols=33 Identities=12% Similarity=0.113 Sum_probs=27.2
Q ss_pred cccCCCCCCcccccccccccCc-hhHHHHhhhcc
Q 048754 195 YFSGGHSPLSQHQDICGILQLS-DEVLAHNILSR 227 (625)
Q Consensus 195 ~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~ 227 (625)
++|.+..++++|+++++++|++ ++++|.++..+
T Consensus 7 ~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~ 40 (96)
T 3a0s_A 7 TLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL 40 (96)
T ss_dssp EEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGS
T ss_pred EEcCCCCEeehhHHHHHHhCCCHHHhcCCCHHHC
Confidence 4466777789999999999999 78887777666
No 281
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=81.42 E-value=40 Score=32.55 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=30.8
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
..+|++|+.+. ....+... +..........-+++.|++... . ..++++|+.+..
T Consensus 60 ~~l~~~d~~~g--~~~~lt~~--~~~~~~~~~~spdg~~l~~~~~-~------~~l~~~d~~~g~ 113 (388)
T 3pe7_A 60 WNYYLLDLNTQ--VATQLTEG--RGDNTFGGFLSPDDDALFYVKD-G------RNLMRVDLATLE 113 (388)
T ss_dssp CEEEEEETTTC--EEEECCCS--SCBCSSSCEECTTSSEEEEEET-T------TEEEEEETTTCC
T ss_pred ceEEEEeCCCC--ceEEeeeC--CCCCccceEEcCCCCEEEEEeC-C------CeEEEEECCCCc
Confidence 36999999988 77777643 2222111222234544544432 1 378889987655
No 282
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=80.50 E-value=40 Score=32.35 Aligned_cols=148 Identities=11% Similarity=0.038 Sum_probs=67.8
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++..++.|+.+. .+.++|+.+. +-... -...............+..+++.|+.++ .+.++|+.+.
T Consensus 138 dg~~l~sgs~d~------~i~iwd~~~~--~~~~~--~~~h~~~V~~~~~~~~~~~~l~s~s~D~-----~v~iwd~~~~ 202 (344)
T 4gqb_B 138 SGTQAVSGSKDI------CIKVWDLAQQ--VVLSS--YRAHAAQVTCVAASPHKDSVFLSCSEDN-----RILLWDTRCP 202 (344)
T ss_dssp TSSEEEEEETTS------CEEEEETTTT--EEEEE--ECCCSSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTSS
T ss_pred CCCEEEEEeCCC------eEEEEECCCC--cEEEE--EcCcCCceEEEEecCCCCCceeeecccc-----cccccccccc
Confidence 455666666533 2888898762 22211 1111111111111123445777777543 5888999877
Q ss_pred CCEEEEcCCCCCCCCCccceEEEE--cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE-
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCII--EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY- 471 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~- 471 (625)
+. -..+.. ........++.+ .++.+++.|+.+ ..+.+||+.+.....+ +.. ...+ -..+.+
T Consensus 203 ~~-~~~~~~---~~~~~~~~~~~~~p~~~~~l~sg~~d------g~v~~wd~~~~~~~~~-~~~--h~~~---v~~v~fs 266 (344)
T 4gqb_B 203 KP-ASQIGC---SAPGYLPTSLAWHPQQSEVFVFGDEN------GTVSLVDTKSTSCVLS-SAV--HSQC---VTGLVFS 266 (344)
T ss_dssp SC-EEECC-------CCCEEEEEECSSCTTEEEEEETT------SEEEEEESCC--CCEE-EEC--CSSC---EEEEEEC
T ss_pred ce-eeeeec---ceeeccceeeeecCCCCcceEEeccC------CcEEEEECCCCcEEEE-EcC--CCCC---EEEEEEc
Confidence 32 222221 111111122233 345677777632 2578889765442222 111 1111 122233
Q ss_pred CCc-EEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 472 GRT-KVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 472 ~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
.++ .+++.|+.+ ..+.++|..+
T Consensus 267 p~g~~~lasgs~D---------~~i~vwd~~~ 289 (344)
T 4gqb_B 267 PHSVPFLASLSED---------CSLAVLDSSL 289 (344)
T ss_dssp SSSSCCEEEEETT---------SCEEEECTTC
T ss_pred cCCCeEEEEEeCC---------CeEEEEECCC
Confidence 232 566666653 4677888873
No 283
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=80.39 E-value=59 Score=33.86 Aligned_cols=204 Identities=12% Similarity=0.089 Sum_probs=95.5
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCC-CCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPT-SWSPP 461 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~-~~~p~ 461 (625)
+.+++.|..+. ....+... +.++.-|..... +++++|+... ..+.+.++|.++.+.... ++. +..|.
T Consensus 320 g~v~~vd~~~~--~~~~v~~i--~~~~~~~d~~~~pdgr~~~va~~------~sn~V~ViD~~t~kl~~~-i~vgg~~Ph 388 (567)
T 1qks_A 320 GKILLVDYTDL--NNLKTTEI--SAERFLHDGGLDGSHRYFITAAN------ARNKLVVIDTKEGKLVAI-EDTGGQTPH 388 (567)
T ss_dssp TEEEEEETTCS--SEEEEEEE--ECCSSEEEEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEE-EECSSSSBC
T ss_pred CeEEEEecCCC--ccceeeee--eccccccCceECCCCCEEEEEeC------CCCeEEEEECCCCcEEEE-EeccCcCCC
Confidence 46888888765 33333322 344555655444 3444555332 246789999876553232 233 23444
Q ss_pred CCCcceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCCCC---CceeEeeeccccCcCCCCCCCCCCccceEEEEe
Q 048754 462 SRLGHSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEE---PQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSM 537 (625)
Q Consensus 462 ~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~---~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~ 537 (625)
+..+... ... .+.+|+.+-.. .+.+.++|..+.. ..|+.+.... ...... ......
T Consensus 389 pg~g~~~-~~p~~g~v~~t~~~g--------~~~Vsvid~~~~~~~~~~~kvv~~i~----------~~g~g~-~~i~~~ 448 (567)
T 1qks_A 389 PGRGANF-VHPTFGPVWATSHMG--------DDSVALIGTDPEGHPDNAWKILDSFP----------ALGGGS-LFIKTH 448 (567)
T ss_dssp CTTCEEE-EETTTEEEEEEEBSS--------SSEEEEEECCTTTCTTTBTSEEEEEE----------CSCSCC-CCEECC
T ss_pred Cccceee-ECCCCCcEEEeCCCC--------CCeEEEecCCCCCCccccCEEEEEEe----------cCCCCC-EEEEeC
Confidence 4322222 232 24677764321 2567888877421 2398887762 011111 111122
Q ss_pred c-CCEEEEEecCCCCCCCCCcEEEEeCCCC-----CCCeEEEcCC---CCCC-CCCCcceEEEECCcEEEEEcCcCCCCC
Q 048754 538 P-CGRIIIFGGSIAGLHSPSQLFLLDPSEE-----KPSWRILNVP---GQPP-KFAWGHSTCVVGGTRVLVLGGHTGEEW 607 (625)
Q Consensus 538 ~-~~~l~v~GG~~~~~~~~~~v~~~d~~~~-----~~~W~~v~~~---~~~p-~~r~~~~~~~~~~~~i~i~GG~~~~~~ 607 (625)
. +.++||---.+......+.|.+||+.+. ...+..+.+. +-.. ..|..|....-.+..+++- -+++..
T Consensus 449 p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s-~~~~~~- 526 (567)
T 1qks_A 449 PNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFS-VWNGKD- 526 (567)
T ss_dssp TTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEE-EECCTT-
T ss_pred CCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEE-eecCCC-
Confidence 2 3478885322111111458999998422 2234555321 1111 1222232222224466654 222221
Q ss_pred ccCceEEEEccCC
Q 048754 608 VLNELHELCLASK 620 (625)
Q Consensus 608 ~~~d~~~~~~~~~ 620 (625)
..+.|.++|..|.
T Consensus 527 ~~~~i~v~D~~t~ 539 (567)
T 1qks_A 527 QESALVVVDDKTL 539 (567)
T ss_dssp SCCEEEEEETTTT
T ss_pred CCCcEEEEECCCc
Confidence 1467778876654
No 284
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=80.15 E-value=40 Score=31.72 Aligned_cols=103 Identities=13% Similarity=0.175 Sum_probs=49.7
Q ss_pred EEEEEccCCCCCccccEEEEECCCCCCE--EEEcCCCCCCCCCccceEEEEcCCE-EEEEcCcCCCCceeceEEEEec-C
Q 048754 370 WLVVFGGCGRQGLLNDVFVLDLDAKQPT--WIEVSGGAPPLPRSWHSSCIIEGSK-LVVSGGCTDAGVLLSDTYLLDL-T 445 (625)
Q Consensus 370 ~iyv~GG~~~~~~~~~~~~~d~~t~~~~--W~~~~~~~~p~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~d~-~ 445 (625)
..++.|+.+ ..+.+||+.+.... ...+... ...-.+.+...++. +++.|+.+ ..+.+||+ .
T Consensus 24 ~~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~d------g~i~~wd~~~ 88 (342)
T 1yfq_A 24 SLLLITSWD-----GSLTVYKFDIQAKNVDLLQSLRY----KHPLLCCNFIDNTDLQIYVGTVQ------GEILKVDLIG 88 (342)
T ss_dssp TEEEEEETT-----SEEEEEEEETTTTEEEEEEEEEC----SSCEEEEEEEESSSEEEEEEETT------SCEEEECSSS
T ss_pred CEEEEEcCC-----CeEEEEEeCCCCccccceeeeec----CCceEEEEECCCCCcEEEEEcCC------CeEEEEEecc
Confidence 455666543 35788887766311 2222111 11112333333456 66666632 36888997 6
Q ss_pred CCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 446 TDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 446 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
+.. ...+... +....-.++.... +.+++.|+.+ ..+.++|+.
T Consensus 89 ~~~--~~~~~~~--~~~~~v~~l~~~~-~~~l~s~~~d---------~~i~iwd~~ 130 (342)
T 1yfq_A 89 SPS--FQALTNN--EANLGICRICKYG-DDKLIAASWD---------GLIEVIDPR 130 (342)
T ss_dssp SSS--EEECBSC--CCCSCEEEEEEET-TTEEEEEETT---------SEEEEECHH
T ss_pred CCc--eEecccc--CCCCceEEEEeCC-CCEEEEEcCC---------CeEEEEccc
Confidence 654 4444320 0111112333333 3566666643 567777765
No 285
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=80.14 E-value=5.1 Score=38.56 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=34.2
Q ss_pred CCeeEE-EecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCccccc
Q 048754 53 TPTSFV-VADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQY 97 (625)
Q Consensus 53 ~~~~i~-~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~ 97 (625)
.+.|++ +++. .+++|+.+|+...+++|+++++++|++..+++.
T Consensus 40 Qp~G~Ll~~~~--~~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~ 83 (337)
T 2ool_A 40 QPHGYLFVVSE--TDLRIASVSANVEDLLRQPPASLLNVPIAHYLT 83 (337)
T ss_dssp CTTSEEEEECT--TTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBC
T ss_pred CCCEEEEEEEC--CCCEEEEEehhHHHHHCcCHHHHcCCCHHHHcC
Confidence 344554 3443 258999999999999999999999999888863
No 286
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=80.06 E-value=0.63 Score=45.13 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=34.3
Q ss_pred cccccccC---CCCCCcccccccccccCc-hhHHHHhhhcccCchhhh
Q 048754 191 QSAQYFSG---GHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 191 ~~~~~~~~---~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~ 234 (625)
....++|. +..++++|+++++++||+ +|++|..+..++++++..
T Consensus 22 ~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~ 69 (332)
T 2wkq_A 22 KNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDR 69 (332)
T ss_dssp SEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCH
T ss_pred CcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCH
Confidence 33344576 777789999999999999 889988888887765543
No 287
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=80.03 E-value=41 Score=31.85 Aligned_cols=110 Identities=12% Similarity=0.088 Sum_probs=53.7
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEE--EcCCEEEEEccCCCCCccccEEEEECC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSS--LNGSWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
++..++.|+.+. .+.++|+.+ .+...+. .... .. .++.. ..++.+++.|+.++ .+.+||+.
T Consensus 97 ~~~~l~s~~~dg------~v~iwd~~~--~~~~~~~--~~~~-~v-~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~ 159 (368)
T 3mmy_A 97 DGSKVFTASCDK------TAKMWDLSS--NQAIQIA--QHDA-PV-KTIHWIKAPNYSCVMTGSWDK-----TLKFWDTR 159 (368)
T ss_dssp TSSEEEEEETTS------EEEEEETTT--TEEEEEE--ECSS-CE-EEEEEEECSSCEEEEEEETTS-----EEEEECSS
T ss_pred CCCEEEEEcCCC------cEEEEEcCC--CCceeec--cccC-ce-EEEEEEeCCCCCEEEEccCCC-----cEEEEECC
Confidence 444555665432 388899877 3443332 1111 11 12222 23556777777543 58899988
Q ss_pred CCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcC
Q 048754 393 AKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIP 455 (625)
Q Consensus 393 t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 455 (625)
+.+.... +.. +. . ..........+++.++ ...+.+|++......+..+.
T Consensus 160 ~~~~~~~-~~~---~~--~-~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~ 208 (368)
T 3mmy_A 160 SSNPMMV-LQL---PE--R-CYCADVIYPMAVVATA-------ERGLIVYQLENQPSEFRRIE 208 (368)
T ss_dssp CSSCSEE-EEC---SS--C-EEEEEEETTEEEEEEG-------GGCEEEEECSSSCEEEEECC
T ss_pred CCcEEEE-Eec---CC--C-ceEEEecCCeeEEEeC-------CCcEEEEEeccccchhhhcc
Confidence 7632222 111 11 1 1222333444444332 13578888766554455544
No 288
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=80.02 E-value=0.32 Score=38.93 Aligned_cols=43 Identities=7% Similarity=0.086 Sum_probs=31.6
Q ss_pred cccccccccccCCCCCCccccccccccc------------Cc-hhHHHHhhhcccC
Q 048754 187 QQYDQSAQYFSGGHSPLSQHQDICGILQ------------LS-DEVLAHNILSRLT 229 (625)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~n~~~~~~~g------------~~-~e~~~~~~~~~~~ 229 (625)
........++|.+..++++|+++++++| ++ ++++|.++..+++
T Consensus 12 ~~~~~gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~ 67 (121)
T 4hi4_A 12 DNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK 67 (121)
T ss_dssp TTSSSEEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCS
T ss_pred hcCCccEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcC
Confidence 3344455566888888899999999996 66 6777777666554
No 289
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=80.00 E-value=47 Score=35.93 Aligned_cols=150 Identities=13% Similarity=0.122 Sum_probs=72.7
Q ss_pred cccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCc-eEEcCCCCCC
Q 048754 383 LNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPM-WREIPTSWSP 460 (625)
Q Consensus 383 ~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~-W~~~~~~~~p 460 (625)
...+|++++.+.+..=..+.... ..+....+.... +++.+++....... ..++++++|+++.... |..+... .
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~~--~~~~l~~~d~~~~~~~~~~~l~~~--~ 316 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATP-ELPKRGHGASVSSDGRWVVITSSEGTD--PVNTVHVARVTNGKIGPVTALIPD--L 316 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCT-TCTTCEEEEEECTTSCEEEEEEECTTC--SCCEEEEEEEETTEECCCEEEECS--S
T ss_pred CCEEEEEECCCCchhCEEEeccC-CCCeEEEEEEECCCCCEEEEEEEccCC--CcceEEEEECCCCCCcccEEecCC--C
Confidence 45688888876621111222110 112222222222 44445444432111 2468999998664324 6666532 1
Q ss_pred CCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCC
Q 048754 461 PSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG 540 (625)
Q Consensus 461 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~ 540 (625)
... ...+..+++.||+...... ....++.+|+++....|..+... .... ...+...++
T Consensus 317 ~~~--~~~~~~dg~~l~~~s~~~~------~~~~l~~~d~~~~~~~~~~l~~~------------~~~~--l~~~~~~~~ 374 (741)
T 1yr2_A 317 KAQ--WDFVDGVGDQLWFVSGDGA------PLKKIVRVDLSGSTPRFDTVVPE------------SKDN--LESVGIAGN 374 (741)
T ss_dssp SSC--EEEEEEETTEEEEEECTTC------TTCEEEEEECSSSSCEEEEEECC------------CSSE--EEEEEEEBT
T ss_pred Cce--EEEEeccCCEEEEEECCCC------CCCEEEEEeCCCCccccEEEecC------------CCCe--EEEEEEECC
Confidence 111 2222334447777744321 13679999987310368877532 1111 122233377
Q ss_pred EEEEEecCCCCCCCCCcEEEEeC
Q 048754 541 RIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 541 ~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
++++....+ ....+|.+++
T Consensus 375 ~lv~~~~~d----g~~~l~~~~~ 393 (741)
T 1yr2_A 375 RLFASYIHD----AKSQVLAFDL 393 (741)
T ss_dssp EEEEEEEET----TEEEEEEEET
T ss_pred EEEEEEEEC----CEEEEEEEeC
Confidence 777765432 1457888987
No 290
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=79.86 E-value=39 Score=31.41 Aligned_cols=233 Identities=9% Similarity=0.068 Sum_probs=107.8
Q ss_pred CeEEEeccCCCCceEEcccCCCC-CCccceeEEEEcC-CEEEEEccCCCCCccccEEEEECCCCCCEEEEc-CCCCCCC-
Q 048754 333 DTFVLNLDAANPEWRRVSVKSSP-PGRWGHTLSSLNG-SWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEV-SGGAPPL- 408 (625)
Q Consensus 333 ~~~~~~~~~~~~~W~~~~~~~~p-~~r~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~-~~~~~p~- 408 (625)
.+++||+.+ .++..+..+... ....-++++...+ +++|+.... +.+++||+. + +...+ .......
T Consensus 47 ~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~------~~l~~~d~~-g--~~~~~~~~~~~~~~ 115 (314)
T 1pjx_A 47 EILRIDLKT--GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGLLVVQTD-G--TFEEIAKKDSEGRR 115 (314)
T ss_dssp EEEEECTTT--CCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEEEEEETT-S--CEEECCSBCTTSCB
T ss_pred EEEEEeCCC--CcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC------CCEEEEeCC-C--CEEEEEeccCCCcc
Confidence 488998766 466655321000 1111123333344 678887642 258999988 6 55555 3211111
Q ss_pred CCccceEEEEcCCEEEEEcCcC---------CCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE----CCc-
Q 048754 409 PRSWHSSCIIEGSKLVVSGGCT---------DAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY----GRT- 474 (625)
Q Consensus 409 ~r~~~~~~~~~~~~iyv~GG~~---------~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~----~~~- 474 (625)
...-+..+...++.+|+..... ........++.||++ .+ ...+... ... ..+.+.. .++
T Consensus 116 ~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~-~~~---~~~i~~~~~~d~dg~ 188 (314)
T 1pjx_A 116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQVDTA-FQF---PNGIAVRHMNDGRPY 188 (314)
T ss_dssp CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEEEEEE-ESS---EEEEEEEECTTSCEE
T ss_pred ccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC--EEEeccC-CCC---cceEEEecccCCCCC
Confidence 1112233333455788764321 011122468888865 33 4433211 111 1334444 444
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCC--ccceEEEEecCCEEEEEecCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPP--RLDHVAVSMPCGRIIIFGGSIAGL 552 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~--r~~~~~~~~~~~~l~v~GG~~~~~ 552 (625)
.||+.... ...+++||++. ..+........ ..+.. .....++.-.++++|+....
T Consensus 189 ~l~v~~~~---------~~~i~~~~~~~-~g~~~~~~~~~---------~~~~~~~~~p~~i~~d~~G~l~v~~~~---- 245 (314)
T 1pjx_A 189 QLIVAETP---------TKKLWSYDIKG-PAKIENKKVWG---------HIPGTHEGGADGMDFDEDNNLLVANWG---- 245 (314)
T ss_dssp EEEEEETT---------TTEEEEEEEEE-TTEEEEEEEEE---------ECCCCSSCEEEEEEEBTTCCEEEEEET----
T ss_pred EEEEEECC---------CCeEEEEECCC-CCccccceEEE---------ECCCCCCCCCCceEECCCCCEEEEEcC----
Confidence 46666432 26788888651 12222211110 00111 11123333346788887532
Q ss_pred CCCCcEEEEeCCCCCCCe-EEEcCCCCCCCCCCcceEEEECCcE-EEEEcCcCCCCCccCceEEEEccCCC
Q 048754 553 HSPSQLFLLDPSEEKPSW-RILNVPGQPPKFAWGHSTCVVGGTR-VLVLGGHTGEEWVLNELHELCLASKQ 621 (625)
Q Consensus 553 ~~~~~v~~~d~~~~~~~W-~~v~~~~~~p~~r~~~~~~~~~~~~-i~i~GG~~~~~~~~~d~~~~~~~~~~ 621 (625)
.+.|.+||+ ++.+. ..+.. +. ..-.++++..++. ||+....+ +.|++|++++..
T Consensus 246 --~~~i~~~d~--~~g~~~~~~~~----~~-~~~~~i~~~~dg~~l~v~~~~~------~~l~~~~~~~~g 301 (314)
T 1pjx_A 246 --SSHIEVFGP--DGGQPKMRIRC----PF-EKPSNLHFKPQTKTIFVTEHEN------NAVWKFEWQRNG 301 (314)
T ss_dssp --TTEEEEECT--TCBSCSEEEEC----SS-SCEEEEEECTTSSEEEEEETTT------TEEEEEECSSCB
T ss_pred --CCEEEEEcC--CCCcEeEEEeC----CC-CCceeEEECCCCCEEEEEeCCC------CeEEEEeCCCCC
Confidence 347899998 32322 22321 11 1122333334445 66654321 568888887643
No 291
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=79.85 E-value=38 Score=32.12 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=29.9
Q ss_pred EEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEEC--CcEEEEEcCcCC
Q 048754 534 AVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVG--GTRVLVLGGHTG 604 (625)
Q Consensus 534 ~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~--~~~i~i~GG~~~ 604 (625)
++....+.+++.||. ...+.+||. .+..|..+...........-.+....+ ++.+++.||.++
T Consensus 255 ~v~~s~~~~l~s~~~------dg~v~iw~~--~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 255 NVAWGFNGLIASVGA------DGVLAVYEE--VDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEEECTTSCEEEEET------TSCEEEEEE--ETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EEEEcCCCEEEEEeC------CCEEEEEEc--CCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 344434556777775 346778887 566776553210101110111222222 457788888655
No 292
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=79.78 E-value=49 Score=32.54 Aligned_cols=146 Identities=10% Similarity=0.042 Sum_probs=67.5
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQ 395 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~ 395 (625)
+.+++.|+.+. .+.++|+.+.... ..+ .. ..... .+++...++.+++.||.++ .+.+||+.+.
T Consensus 120 ~~~l~s~s~Dg------~i~vwd~~~~~~~-~~l--~~-h~~~V-~~v~~~~~~~~l~sgs~D~-----~i~iwd~~~~- 182 (410)
T 1vyh_C 120 FSVMVSASEDA------TIKVWDYETGDFE-RTL--KG-HTDSV-QDISFDHSGKLLASCSADM-----TIKLWDFQGF- 182 (410)
T ss_dssp SSEEEEEESSS------CEEEEETTTCCCC-EEE--CC-CSSCE-EEEEECTTSSEEEEEETTS-----CCCEEETTSS-
T ss_pred CCEEEEEeCCC------eEEEEECCCCcEE-EEE--ec-cCCcE-EEEEEcCCCCEEEEEeCCC-----eEEEEeCCCC-
Confidence 45666676533 2888998763111 222 11 11111 2222223445777777543 4677888765
Q ss_pred CEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcE
Q 048754 396 PTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTK 475 (625)
Q Consensus 396 ~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~ 475 (625)
.-...-.. . ...-.+.+...++..++.|+.+ ..+.+||+.+... -..+.. .... -.++....++.
T Consensus 183 -~~~~~~~~--h-~~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~-~~~~~~--h~~~--v~~~~~~~~g~ 247 (410)
T 1vyh_C 183 -ECIRTMHG--H-DHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYC-VKTFTG--HREW--VRMVRPNQDGT 247 (410)
T ss_dssp -CEEECCCC--C-SSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCE-EEEEEC--CSSC--EEEEEECTTSS
T ss_pred -ceeEEEcC--C-CCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcE-EEEEeC--CCcc--EEEEEECCCCC
Confidence 32221111 1 1111122222344566666643 3678889765431 112211 1111 11222233446
Q ss_pred EEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 476 VLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 476 l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
+++.|+.+ ..+.++|+.+
T Consensus 248 ~l~s~s~D---------~~v~vwd~~~ 265 (410)
T 1vyh_C 248 LIASCSND---------QTVRVWVVAT 265 (410)
T ss_dssp EEEEEETT---------SCEEEEETTT
T ss_pred EEEEEcCC---------CeEEEEECCC
Confidence 77777653 4667777763
No 293
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=79.76 E-value=46 Score=35.23 Aligned_cols=202 Identities=13% Similarity=0.031 Sum_probs=95.1
Q ss_pred CCeEEEeccCCC----CceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCC-C-ccccEEEEECC-CCCC-EEEEcCC
Q 048754 332 DDTFVLNLDAAN----PEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQ-G-LLNDVFVLDLD-AKQP-TWIEVSG 403 (625)
Q Consensus 332 ~~~~~~~~~~~~----~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~-~-~~~~~~~~d~~-t~~~-~W~~~~~ 403 (625)
.+++++|+.+.. .....+.. ..+ .........-++++|++....... . ...++|++|+. ++.. ....+..
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~-~~~-~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSD-DAH-RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSC-SCS-SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred eEEEEEECCCCccccCCceeEEEe-cCC-CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 468899987610 13444420 111 111111111245555554432211 1 13579999998 4410 2334432
Q ss_pred CCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCC--CCCC---cceEEEECCcEEEE
Q 048754 404 GAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSP--PSRL---GHSLSVYGRTKVLM 478 (625)
Q Consensus 404 ~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p--~~r~---~~~~~~~~~~~l~v 478 (625)
. . ...........++++|+.+... + ...+|.+|+++.. +..+...... .+.+ ..+.+...++++++
T Consensus 239 ~--~-~~~~~~~~~spdg~l~~~~~~~--~--~~~l~~~~~~~~~--~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~ 309 (662)
T 3azo_A 239 G--P-EEAIAQAEWAPDGSLIVATDRT--G--WWNLHRVDPATGA--ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV 309 (662)
T ss_dssp E--T-TBCEEEEEECTTSCEEEEECTT--S--SCEEEEECTTTCC--EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred C--C-CceEcceEECCCCeEEEEECCC--C--CeEEEEEECCCCc--eeecccccccccCccccccCceEeEeCCCEEEE
Confidence 1 1 1111222223344577665532 1 2378999976555 8777542110 1111 12333444556666
Q ss_pred EcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEE-EecCCEEEEEecCCCCCCCCCc
Q 048754 479 FGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAV-SMPCGRIIIFGGSIAGLHSPSQ 557 (625)
Q Consensus 479 ~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~-~~~~~~l~v~GG~~~~~~~~~~ 557 (625)
.+.. + ...+|.+|+.+ .....+.. +.. ....+ ...++.+++..+.. ....+
T Consensus 310 ~~~~---~-----~~~l~~~d~~~--~~~~~l~~-------------~~~--~~~~~~s~~~~~~~~~~~~~---~~~~~ 361 (662)
T 3azo_A 310 VHGK---G-----AAVLGILDPES--GELVDAAG-------------PWT--EWAATLTVSGTRAVGVAASP---RTAYE 361 (662)
T ss_dssp EEBS---S-----SCEEEEEETTT--TEEEECCS-------------SCC--EEEEEEEEETTEEEEEEEET---TEEEE
T ss_pred EEEc---C-----ccEEEEEECCC--CcEEEecC-------------CCC--eEEEEEecCCCEEEEEEcCC---CCCCE
Confidence 6543 2 36889999873 34444421 111 11222 33366666665432 12458
Q ss_pred EEEEeCCCCCCCeEEEc
Q 048754 558 LFLLDPSEEKPSWRILN 574 (625)
Q Consensus 558 v~~~d~~~~~~~W~~v~ 574 (625)
+|.+|+ .+.+...+.
T Consensus 362 i~~~d~--~~g~~~~l~ 376 (662)
T 3azo_A 362 VVELDT--VTGRARTIG 376 (662)
T ss_dssp EEEEET--TTCCEEEEE
T ss_pred EEEEEC--CCCceEEee
Confidence 899998 566666663
No 294
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=79.47 E-value=31 Score=30.08 Aligned_cols=153 Identities=11% Similarity=0.084 Sum_probs=76.4
Q ss_pred eEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCce--EEccc--CCCCCCccceeEEEE-cCCEEEEEccCCCCCcccc
Q 048754 311 ACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEW--RRVSV--KSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLND 385 (625)
Q Consensus 311 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W--~~~~~--~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~ 385 (625)
++.+++++|+|=|. .+|+++........ ..|.. +++|. ... ++... .++++|+|-| +.
T Consensus 12 i~~~~g~~yfFkg~--------~~Wr~~~~~~~~~~~p~~Is~~w~glP~-~ID-Aa~~~~~~~~~yfFkG-------~~ 74 (195)
T 1itv_A 12 IAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPR-KLD-SVFEEPLSKKLFFFSG-------RQ 74 (195)
T ss_dssp EEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCS-SCS-EEEECTTTCCEEEEET-------TE
T ss_pred EEEeCCEEEEEECC--------EEEEEECCccccCCCcEEhhhccCCCCC-Ccc-EEEEECCCCeEEEEeC-------CE
Confidence 44578899999873 16666643310011 22211 12232 222 22222 2567999988 46
Q ss_pred EEEEECCCCCCEEEEcCCCCCCCC--CccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCc--e-EEcCCCCCC
Q 048754 386 VFVLDLDAKQPTWIEVSGGAPPLP--RSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPM--W-REIPTSWSP 460 (625)
Q Consensus 386 ~~~~d~~t~~~~W~~~~~~~~p~~--r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~--W-~~~~~~~~p 460 (625)
.|+|+..+-. .-..+.....|.. .. .++....++++|+|-| +..|.||..+.+.. . ..+......
T Consensus 75 yw~~~~~~~~-~Pk~i~~~G~p~~~~~i-DAA~~~~~g~~yfFkg--------~~ywr~d~~~~~~~~gyPr~i~~~w~G 144 (195)
T 1itv_A 75 VWVYTGASVL-GPRRLDKLGLGADVAQV-TGALRSGRGKMLLFSG--------RRLWRFDVKAQMVDPRSASEVDRMFPG 144 (195)
T ss_dssp EEEEETTEEE-EEEEGGGGTCCTTCCCC-CEEEECSTTEEEEEET--------TEEEEEETTTTEECGGGCEEHHHHSTT
T ss_pred EEEEcCCccC-CCEEeeecccCCCccce-eEEEEcCCCeEEEEeC--------CEEEEEeCCcccccCCCccChhhcCCC
Confidence 7888854321 1223333222321 22 2333345678999977 36799996543210 0 111101111
Q ss_pred CCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 461 PSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 461 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
.|..-.++.... +.+|++-| +..|.||...
T Consensus 145 vp~~idaa~~~~-g~~Yffkg-----------~~y~~~~~~~ 174 (195)
T 1itv_A 145 VPLDTHDVFQFR-EKAYFCQD-----------RFYWRVSSRS 174 (195)
T ss_dssp SCSSCSEEEEET-TEEEEEET-----------TEEEEEECCT
T ss_pred CCCCCCEEEEeC-CeEEEEeC-----------CEEEEEECCc
Confidence 122223444454 58999966 6788898763
No 295
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=78.94 E-value=43 Score=31.39 Aligned_cols=211 Identities=11% Similarity=0.173 Sum_probs=104.5
Q ss_pred EECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECC
Q 048754 313 AAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 313 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
..++.||+.... ..+++||.. ....|..-. ..+ ...+.+...++.+|+... ...++.||+.
T Consensus 105 ~~~~~l~v~t~~-------~~l~~~d~~-g~~~~~~~~--~~~---~~~~~~~~~~g~l~vgt~------~~~l~~~d~~ 165 (330)
T 3hxj_A 105 IFEDILYVTSMD-------GHLYAINTD-GTEKWRFKT--KKA---IYATPIVSEDGTIYVGSN------DNYLYAINPD 165 (330)
T ss_dssp EETTEEEEECTT-------SEEEEECTT-SCEEEEEEC--SSC---CCSCCEECTTSCEEEECT------TSEEEEECTT
T ss_pred EECCEEEEEecC-------CEEEEEcCC-CCEEEEEcC--CCc---eeeeeEEcCCCEEEEEcC------CCEEEEECCC
Confidence 348888875421 238899987 335776532 111 112223333556766432 1358999988
Q ss_pred CCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC
Q 048754 393 AKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG 472 (625)
Q Consensus 393 t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 472 (625)
++..|...... ... .+.+...++.+|+.. ..++.|| .+....|...... . ...+.+...
T Consensus 166 -g~~~~~~~~~~----~~~-~~~~~d~~g~l~v~t---------~~l~~~d-~~g~~~~~~~~~~----~-~~~~~~~~~ 224 (330)
T 3hxj_A 166 -GTEKWRFKTND----AIT-SAASIGKDGTIYFGS---------DKVYAIN-PDGTEKWNFYAGY----W-TVTRPAISE 224 (330)
T ss_dssp -SCEEEEEECSS----CCC-SCCEECTTCCEEEES---------SSEEEEC-TTSCEEEEECCSS----C-CCSCCEECT
T ss_pred -CCEeEEEecCC----Cce-eeeEEcCCCEEEEEe---------CEEEEEC-CCCcEEEEEccCC----c-ceeceEECC
Confidence 65567654321 111 223333355677633 3688899 4555567764321 1 112333444
Q ss_pred CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCC
Q 048754 473 RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGL 552 (625)
Q Consensus 473 ~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~ 552 (625)
++.||+... ...++.||.+. ...|..-... .... +.+...++.||+...
T Consensus 225 ~g~l~v~t~----------~~gl~~~~~~g-~~~~~~~~~~--------------~~~~-~~~~~~~g~l~v~t~----- 273 (330)
T 3hxj_A 225 DGTIYVTSL----------DGHLYAINPDG-TEKWRFKTGK--------------RIES-SPVIGNTDTIYFGSY----- 273 (330)
T ss_dssp TSCEEEEET----------TTEEEEECTTS-CEEEEEECSS--------------CCCS-CCEECTTSCEEEECT-----
T ss_pred CCeEEEEcC----------CCeEEEECCCC-CEeEEeeCCC--------------Cccc-cceEcCCCeEEEecC-----
Confidence 447777521 15677887652 3345432211 1111 122233677777421
Q ss_pred CCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 553 HSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 553 ~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
...+++||++ .+..|..-. +.. ...+.+...++.|++ |+.++
T Consensus 274 --~ggl~~~d~~-g~~~~~~~~-----~~~-~~~~~~~d~~g~l~~-gt~~G 315 (330)
T 3hxj_A 274 --DGHLYAINPD-GTEKWNFET-----GSW-IIATPVIDENGTIYF-GTRNG 315 (330)
T ss_dssp --TCEEEEECTT-SCEEEEEEC-----SSC-CCSCCEECTTCCEEE-ECTTS
T ss_pred --CCCEEEECCC-CcEEEEEEc-----CCc-cccceEEcCCCEEEE-EcCCC
Confidence 2368899973 344665432 111 122333435556665 55444
No 296
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=78.88 E-value=47 Score=32.60 Aligned_cols=64 Identities=8% Similarity=-0.055 Sum_probs=34.4
Q ss_pred ceEEEEecCCEEEEEecCCCCCCC---CCcEEEE-eCC-CCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcC
Q 048754 531 DHVAVSMPCGRIIIFGGSIAGLHS---PSQLFLL-DPS-EEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGG 601 (625)
Q Consensus 531 ~~~~~~~~~~~l~v~GG~~~~~~~---~~~v~~~-d~~-~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG 601 (625)
.|+++...++.||.+|-...+... ......- .+. ........+. .-..|++++..++.+|.+|-
T Consensus 223 ~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~-------~G~~hs~alt~~G~v~~wG~ 291 (389)
T 3kci_A 223 AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVE-------CGSQFSVALTKSGAVYTWGK 291 (389)
T ss_dssp CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEE-------EETTEEEEEETTSCEEEEEC
T ss_pred cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEe-------CCCCEEEEEeCCCeEEEEeC
Confidence 577777778999999854321111 1111110 000 0111233332 22458888888889999995
No 297
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=78.69 E-value=34 Score=32.22 Aligned_cols=20 Identities=10% Similarity=0.111 Sum_probs=13.6
Q ss_pred EEEEEccCCCCCccccEEEEECCCC
Q 048754 370 WLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 370 ~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
.+++.|+.++ .+.++|+.+.
T Consensus 72 ~~l~s~s~D~-----~v~iWd~~~~ 91 (316)
T 3bg1_A 72 NILASCSYDR-----KVIIWREENG 91 (316)
T ss_dssp SCEEEEETTS-----CEEEECCSSS
T ss_pred CEEEEEECCC-----EEEEEECCCC
Confidence 4666676543 5788888776
No 298
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=78.17 E-value=60 Score=32.66 Aligned_cols=102 Identities=13% Similarity=0.136 Sum_probs=53.1
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCE-EEEcCCC--CCCCCCccceEEEE-----cCCEEEEEcCcCCCCceec
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPT-WIEVSGG--APPLPRSWHSSCII-----EGSKLVVSGGCTDAGVLLS 437 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~-W~~~~~~--~~p~~r~~~~~~~~-----~~~~iyv~GG~~~~~~~~~ 437 (625)
..++++|+|-| +..|+|+-..-... -..+... ..|. .. .++... .++++|+|-| +
T Consensus 105 ~~~g~~yfFkG-------~~yW~~~~~~~~~GYPk~I~~~fpGlp~-~I-DAA~~~~~~~~~~~~~yfFkG--------~ 167 (460)
T 1qhu_A 105 HGHTSVYLIKG-------DKVWVYTSEKNEKVYPKSLQDEFPGIPF-PL-DAAVECHRGECQDEGILFFQG--------N 167 (460)
T ss_dssp ETTTEEEEEET-------TEEEEECC-------CEEHHHHSTTCCS-SC-CEEEEECBBTBSSSEEEEEET--------T
T ss_pred eCCCcEEEEec-------cEEEEEeCCcccCCCCeEhhhccCCCCC-Ce-eEEEECCccCCCCCeEEEEec--------c
Confidence 34568999987 45788864322101 1223211 1232 22 233332 2567898887 3
Q ss_pred eEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 438 DTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 438 ~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
..|.||..+.+ ...-.-++.| .. -++.... +++|+|-| +..|.||..
T Consensus 168 ~yw~yd~~~~~--~~~~~w~gi~--~i-DAA~~~~-g~~YfFkG-----------~~y~rfd~~ 214 (460)
T 1qhu_A 168 RKWFWDLTTGT--KKERSWPAVG--NC-TSALRWL-GRYYCFQG-----------NQFLRFNPV 214 (460)
T ss_dssp EEEEEETTTTE--EEEECCTTSC--CC-SEEEEET-TEEEEEET-----------TEEEEECTT
T ss_pred cEEEEecccce--eecccCCCCC--cc-chheeeC-CceEEEEC-----------CEEEEEcCc
Confidence 67999976543 3322112232 22 2333444 59999977 677888865
No 299
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=77.94 E-value=37 Score=30.17 Aligned_cols=157 Identities=10% Similarity=0.097 Sum_probs=76.4
Q ss_pred ceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCc-eEEcccC--CCCCCccceeEEEEcCCEEEEEccCCCCCccccE
Q 048754 310 SACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPE-WRRVSVK--SSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDV 386 (625)
Q Consensus 310 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~-W~~~~~~--~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 386 (625)
+++.+.+++|+|=|. .+|+++....... =..|... +.| .....+.....++++|+|-| +..
T Consensus 35 Ai~~~~g~~~fFkg~--------~~Wr~~~~~~~~~~P~~I~~~wp~lp-~~IDAA~~~~~~~k~yfFkG-------~~y 98 (218)
T 1gen_A 35 GIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELP-EKIDAVYEAPQEEKAVFFAG-------NEY 98 (218)
T ss_dssp EEEEETTEEEEEETT--------EEEEESSTTSCCEEEEEGGGTCTTSC-SCCSEEEEETTTTEEEEEET-------TEE
T ss_pred EEEeCCCcEEEEECC--------EEEEEeCCCCccCCCEEHHHhcCCCC-CCccEEEEECCCCEEEEEeC-------CEE
Confidence 344568899999873 1566554321001 1222211 122 22322222223578999987 468
Q ss_pred EEEECCCCCC-EEEEcCCCCCCC-CCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCc--e-EEcCCCCCC
Q 048754 387 FVLDLDAKQP-TWIEVSGGAPPL-PRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPM--W-REIPTSWSP 460 (625)
Q Consensus 387 ~~~d~~t~~~-~W~~~~~~~~p~-~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~--W-~~~~~~~~p 460 (625)
|+||-.+... --..+.....|. ...-.++... .++++|+|-| +..|.||..+.... . ..+....+.
T Consensus 99 W~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG--------~~ywr~d~~~~~v~~gyPr~i~~~w~g 170 (218)
T 1gen_A 99 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG--------DKFWRYNEVKKKMDPGFPKLIADAWNA 170 (218)
T ss_dssp EEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCCEEHHHHSSS
T ss_pred EEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC--------CEEEEEECccccccCCCCcchhhccCC
Confidence 9998532100 112333311122 1122344443 4679999977 46889996543210 0 011111112
Q ss_pred CCCCcceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 461 PSRLGHSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 461 ~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
.+..-.++.... ++.+|++-| +..|.||..
T Consensus 171 ~p~~idaAf~~~~~g~~YfFkg-----------~~y~~~~~~ 201 (218)
T 1gen_A 171 IPDNLDAVVDLQGGGHSYFFKG-----------AYYLKLENQ 201 (218)
T ss_dssp CCSSCSEEEECTTTCEEEEEET-----------TEEEEEETT
T ss_pred CCCCCCEEEEEcCCCcEEEEEC-----------CEEEEEECC
Confidence 222334454444 468999866 678888875
No 300
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=77.79 E-value=0.31 Score=42.56 Aligned_cols=42 Identities=7% Similarity=-0.016 Sum_probs=33.3
Q ss_pred cccccc-CCCCCCcccccccccccCchhHHHHhhhcccCchhhh
Q 048754 192 SAQYFS-GGHSPLSQHQDICGILQLSDEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 192 ~~~~~~-~~~~~~~~n~~~~~~~g~~~e~~~~~~~~~~~~~~~~ 234 (625)
...++| .+..++++|+++++++|++ +++|..+.+++++.+..
T Consensus 49 ~i~~~d~~~g~i~~~N~a~~~l~G~~-~~~G~~~~~~~~~~~~~ 91 (185)
T 3kx0_X 49 ILVGLEGPDHRFVAVNAAYRGFSPLL-DTVGQPAREVYPELEGQ 91 (185)
T ss_dssp EEEEEETTTTEEEEECHHHHHHCCCC-SCTTSBHHHHCTTSCSS
T ss_pred eEEEEECCCcEEEEEcHHHHHHcCCc-cccCCcHHHHCCchhhh
Confidence 333457 6777779999999999999 99999988888775443
No 301
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=77.68 E-value=0.71 Score=36.22 Aligned_cols=44 Identities=11% Similarity=0.003 Sum_probs=33.0
Q ss_pred cccccccc---CCCCCCcccccccccccCc-hhHHHHhhhcccCchhh
Q 048754 190 DQSAQYFS---GGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDV 233 (625)
Q Consensus 190 ~~~~~~~~---~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~ 233 (625)
.....+++ .+..++++|+++++++|++ ++++|..+..++++.+.
T Consensus 16 ~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~ 63 (130)
T 2z6d_A 16 QQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTD 63 (130)
T ss_dssp TCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSC
T ss_pred ccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCC
Confidence 33344456 6677779999999999999 78888888777776543
No 302
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=77.37 E-value=56 Score=31.84 Aligned_cols=118 Identities=14% Similarity=0.040 Sum_probs=56.5
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCC----CccccEEEEE
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQ----GLLNDVFVLD 390 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~d 390 (625)
+..+|+.-+..... ...+++||+.+ .+- + ...|.....+-...-+++++|+..-.... ...+.+.+||
T Consensus 32 ~~~~yv~~~~~~~~--~~~v~v~D~~t--~~~--~--~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 32 GRRSYINLPAHHSA--IIQQWVLDAGS--GSI--L--GHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred CCEEEEeCCcccCC--ccEEEEEECCC--CeE--E--EEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence 34577775411111 11588999876 232 2 11222222222232356789988532111 1235688999
Q ss_pred CCCCCCE-EEEcCCCC----CCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 391 LDAKQPT-WIEVSGGA----PPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 391 ~~t~~~~-W~~~~~~~----~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
+.+.+.. +..+.... ...|+ +....-+++.+|+..-. ..+.+.++| ++.+
T Consensus 104 ~~t~~~~~~i~~~~~~~~~~g~~p~--~~~~spDG~~l~v~n~~-----~~~~v~viD-~t~~ 158 (373)
T 2mad_H 104 PVTFLPIADIELPDAPRFDVGPYSW--MNANTPNNADLLFFQFA-----AGPAVGLVV-QGGS 158 (373)
T ss_pred CCCCcEEEEEECCCccccccCCCcc--ceEECCCCCEEEEEecC-----CCCeEEEEE-CCCC
Confidence 9876321 11222000 01122 22223367778875321 135788899 7765
No 303
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=77.05 E-value=0.59 Score=45.63 Aligned_cols=40 Identities=10% Similarity=0.033 Sum_probs=31.4
Q ss_pred ccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCch
Q 048754 192 SAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPR 231 (625)
Q Consensus 192 ~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~ 231 (625)
...++|.+..++++|+++++++|++ ++++|.++..+.+++
T Consensus 20 ~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~~ 60 (349)
T 3a0r_A 20 AIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFE 60 (349)
T ss_dssp EEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTTT
T ss_pred eEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcChh
Confidence 3335588888889999999999999 888888777764433
No 304
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=76.49 E-value=85 Score=33.54 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=80.0
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCC------CCceeceEEEEecCCCCCceEEcCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTD------AGVLLSDTYLLDLTTDKPMWREIPTS 457 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~------~~~~~~~~~~~d~~~~~~~W~~~~~~ 457 (625)
..++++|+.++ ....... +..+....+-. +++.||+...... .......++.+++.+....=..+...
T Consensus 155 ~~i~v~dl~tg--~~~~~~~---~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~ 228 (693)
T 3iuj_A 155 REIHLMDVESK--QPLETPL---KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA 228 (693)
T ss_dssp EEEEEEETTTC--SEEEEEE---EEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC
T ss_pred EEEEEEECCCC--CCCcccc---CCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec
Confidence 57999999998 5443311 11222223334 6666665432211 00234578888876543111222211
Q ss_pred CCC-CCCCcceEEEECCcE-EEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEE
Q 048754 458 WSP-PSRLGHSLSVYGRTK-VLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAV 535 (625)
Q Consensus 458 ~~p-~~r~~~~~~~~~~~~-l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~ 535 (625)
.. .+....+...-.+++ |++...... . .+++|.+|+++....|..+... . ......+
T Consensus 229 -~~~~~~~~~~~~~SpDg~~l~~~~~~~~-~-----~~~i~~~d~~~~~~~~~~l~~~-------------~-~~~~~~~ 287 (693)
T 3iuj_A 229 -IPAQHHRYVGATVTEDDRFLLISAANST-S-----GNRLYVKDLSQENAPLLTVQGD-------------L-DADVSLV 287 (693)
T ss_dssp -SGGGCCSEEEEEECTTSCEEEEEEESSS-S-----CCEEEEEETTSTTCCCEEEECS-------------S-SSCEEEE
T ss_pred -CCCCCeEEEEEEEcCCCCEEEEEEccCC-C-----CcEEEEEECCCCCCceEEEeCC-------------C-CceEEEE
Confidence 11 122223333333444 444322111 1 2689999987543467777532 1 1112223
Q ss_pred EecCCEEEEEecCCCCCCCCCcEEEEeCCCC-CCCeEEEcC
Q 048754 536 SMPCGRIIIFGGSIAGLHSPSQLFLLDPSEE-KPSWRILNV 575 (625)
Q Consensus 536 ~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~-~~~W~~v~~ 575 (625)
...++++|+....+. ....|+.+|+... ...|+.+..
T Consensus 288 ~~~g~~l~~~t~~~~---~~~~l~~~d~~~~~~~~~~~l~~ 325 (693)
T 3iuj_A 288 DNKGSTLYLLTNRDA---PNRRLVTVDAANPGPAHWRDLIP 325 (693)
T ss_dssp EEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEEC
T ss_pred eccCCEEEEEECCCC---CCCEEEEEeCCCCCccccEEEec
Confidence 344788888865421 2568999998421 135887753
No 305
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=76.27 E-value=0.57 Score=39.34 Aligned_cols=45 Identities=9% Similarity=-0.094 Sum_probs=33.8
Q ss_pred cccccccccCCC---CCCcccccccccccCc-hhHHHHhhhcccCchhh
Q 048754 189 YDQSAQYFSGGH---SPLSQHQDICGILQLS-DEVLAHNILSRLTPRDV 233 (625)
Q Consensus 189 ~~~~~~~~~~~~---~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~ 233 (625)
......+++.+. .++++|+++++++|++ ++++|..+..++++.+.
T Consensus 34 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~ 82 (162)
T 3sw1_A 34 SNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRD 82 (162)
T ss_dssp CSSEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCC
T ss_pred ccCcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcC
Confidence 344444556666 7779999999999999 78888888777766543
No 306
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=75.81 E-value=58 Score=31.31 Aligned_cols=192 Identities=9% Similarity=0.020 Sum_probs=91.5
Q ss_pred EEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEc-CCEEEEEccCCCCCccccEEEEECCCCC
Q 048754 317 RLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLN-GSWLVVFGGCGRQGLLNDVFVLDLDAKQ 395 (625)
Q Consensus 317 ~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~t~~ 395 (625)
.+++.|+.+. .+.+||+.+. ............ ..-.+++... ++..++.|+.+ ..+.++|+.+.
T Consensus 87 ~~l~s~~~dg------~i~iwd~~~~--~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~- 151 (383)
T 3ei3_B 87 TTVAVGSKGG------DIILWDYDVQ--NKTSFIQGMGPG-DAITGMKFNQFNTNQLFVSSIR-----GATTLRDFSGS- 151 (383)
T ss_dssp TEEEEEEBTS------CEEEEETTST--TCEEEECCCSTT-CBEEEEEEETTEEEEEEEEETT-----TEEEEEETTSC-
T ss_pred CEEEEEcCCC------eEEEEeCCCc--ccceeeecCCcC-CceeEEEeCCCCCCEEEEEeCC-----CEEEEEECCCC-
Confidence 4666666532 3889998863 443321110111 1112222222 33566677643 35888998876
Q ss_pred CEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcE
Q 048754 396 PTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTK 475 (625)
Q Consensus 396 ~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~ 475 (625)
....+..... ....-.+.+...++.+++.|+.+ ..+.+||+... .-..+.. .. ..-.++....++.
T Consensus 152 -~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~--~~~~~~~--h~--~~v~~~~~~~~~~ 217 (383)
T 3ei3_B 152 -VIQVFAKTDS-WDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGH--EIFKEKL--HK--AKVTHAEFNPRCD 217 (383)
T ss_dssp -EEEEEECCCC-SSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSC--EEEEEEC--SS--SCEEEEEECSSCT
T ss_pred -ceEEEeccCC-CCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCC--EEEEecc--CC--CcEEEEEECCCCC
Confidence 6665543211 11111233333444566666632 36888897322 1223221 11 1112333333434
Q ss_pred -EEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEec-CCEEEEEecCCCCCC
Q 048754 476 -VLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMP-CGRIIIFGGSIAGLH 553 (625)
Q Consensus 476 -l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~ 553 (625)
+++.|+.+ ..+.+||+.+....-..+...+ ....-.++.... ++++++.|+.
T Consensus 218 ~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~~l~~~~~----- 271 (383)
T 3ei3_B 218 WLMATSSVD---------ATVKLWDLRNIKDKNSYIAEMP------------HEKPVNAAYFNPTDSTKLLTTDQ----- 271 (383)
T ss_dssp TEEEEEETT---------SEEEEEEGGGCCSTTCEEEEEE------------CSSCEEEEEECTTTSCEEEEEES-----
T ss_pred CEEEEEeCC---------CEEEEEeCCCCCcccceEEEec------------CCCceEEEEEcCCCCCEEEEEcC-----
Confidence 77777653 5678888874211122222220 011112233333 5677777775
Q ss_pred CCCcEEEEeCC
Q 048754 554 SPSQLFLLDPS 564 (625)
Q Consensus 554 ~~~~v~~~d~~ 564 (625)
...+.+||+.
T Consensus 272 -d~~i~iwd~~ 281 (383)
T 3ei3_B 272 -RNEIRVYSSY 281 (383)
T ss_dssp -SSEEEEEETT
T ss_pred -CCcEEEEECC
Confidence 3478888874
No 307
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=75.55 E-value=53 Score=30.66 Aligned_cols=49 Identities=22% Similarity=0.239 Sum_probs=26.8
Q ss_pred CCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 332 DDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 332 ~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
+.++++|+.+ .+....-..+ ..-+.++.. +++++|+.+ +.++++|+.+.
T Consensus 115 ~~i~v~d~~~--~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~--------~~i~~~d~~~~ 164 (337)
T 1pby_B 115 TRVALYDAET--LSRRKAFEAP----RQITMLAWARDGSKLYGLG--------RDLHVMDPEAG 164 (337)
T ss_dssp CEEEEEETTT--TEEEEEEECC----SSCCCEEECTTSSCEEEES--------SSEEEEETTTT
T ss_pred ceEEEEECCC--CcEEEEEeCC----CCcceeEECCCCCEEEEeC--------CeEEEEECCCC
Confidence 5589999876 3332211111 111222332 345577762 36999999887
No 308
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=75.33 E-value=65 Score=31.61 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=28.4
Q ss_pred cCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 538 PCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 538 ~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
.+++.++.||. ...|.++|+. .......+... ...-.++...+++.+++.|+.++
T Consensus 348 ~~g~~l~s~s~------D~~i~vwd~~-~~~~~~~~~~h-----~~~v~~l~~~~~~~~l~sgs~D~ 402 (410)
T 1vyh_C 348 SGGKFILSCAD------DKTLRVWDYK-NKRCMKTLNAH-----EHFVTSLDFHKTAPYVVTGSVDQ 402 (410)
T ss_dssp SSSSCEEEEET------TTEEEEECCT-TSCCCEEEECC-----SSCEEEEEECSSSSCEEEEETTS
T ss_pred CCCCEEEEEeC------CCeEEEEECC-CCceEEEEcCC-----CCcEEEEEEcCCCCEEEEEeCCC
Confidence 35667777775 3468888884 12233333211 11112333334556777787665
No 309
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=74.96 E-value=67 Score=31.56 Aligned_cols=135 Identities=10% Similarity=0.073 Sum_probs=62.1
Q ss_pred eEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccc
Q 048754 334 TFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWH 413 (625)
Q Consensus 334 ~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~ 413 (625)
++++|+.+ .+...+-....+. ..-.+++...++..++.|+.++ .+.++|+.++ +-...... ...+.
T Consensus 127 V~lWd~~t--g~~~~~~~~~~~~-~~V~sv~fspdg~~lasgs~Dg-----~v~iWd~~~~--~~~~~~~~--h~~~v-- 192 (420)
T 4gga_A 127 VYLWSASS--GDILQLLQMEQPG-EYISSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQ--KRLRNMTS--HSARV-- 192 (420)
T ss_dssp EEEEETTT--CCEEEEEECCSTT-CCEEEEEECTTSSEEEEEETTS-----CEEEEETTTT--EEEEEECC--CSSCE--
T ss_pred EEEEECCC--CCEEEEEEecCCC-CcEEEEEECCCCCEEEEEECCC-----eEEEEEcCCC--cEEEEEeC--CCCce--
Confidence 77888776 3444331111111 1111222233445667777543 5889999887 43322211 22222
Q ss_pred eEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccC
Q 048754 414 SSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSG 493 (625)
Q Consensus 414 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 493 (625)
.+...++ .+++.|+.+ ..+..+|.......-..+.. .... ........++..++.|+.+ .
T Consensus 193 ~~~s~~~-~~l~sgs~d------~~i~~~d~~~~~~~~~~~~~--h~~~--~~~~~~~~~g~~l~s~~~D---------~ 252 (420)
T 4gga_A 193 GSLSWNS-YILSSGSRS------GHIHHHDVRVAEHHVATLSG--HSQE--VCGLRWAPDGRHLASGGND---------N 252 (420)
T ss_dssp EEEEEET-TEEEEEETT------SEEEEEETTSSSCEEEEEEC--CSSC--EEEEEECTTSSEEEEEETT---------S
T ss_pred EEEeeCC-CEEEEEeCC------CceeEeeecccceeeEEecc--cccc--eeeeeecCCCCeeeeeecc---------c
Confidence 2334444 566666532 35667776443322222221 1111 1122233334556666543 4
Q ss_pred ceEEEEcCC
Q 048754 494 ESYTIDLGD 502 (625)
Q Consensus 494 ~~~~~d~~~ 502 (625)
.+.+++..+
T Consensus 253 ~v~i~~~~~ 261 (420)
T 4gga_A 253 LVNVWPSAP 261 (420)
T ss_dssp CEEEEESSC
T ss_pred cceEEeecc
Confidence 666777764
No 310
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=74.87 E-value=64 Score=31.33 Aligned_cols=155 Identities=8% Similarity=0.079 Sum_probs=75.7
Q ss_pred eEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEccc--CCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEE
Q 048754 311 ACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSV--KSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVF 387 (625)
Q Consensus 311 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 387 (625)
++.+.+++|+|=|. .+|+++.......-..|.. +++| .... ++... .++++|+|-| +..|
T Consensus 186 v~~~~g~~~fFkg~--------~~Wr~~~~~~~~~p~~I~~~wpgLP-~~iD-Aa~~~~~~g~~~fFkg-------~~yW 248 (365)
T 3ba0_A 186 VTTVGNKIFFFKDR--------FFWLKVSERPKTSVNLISSLWPTLP-SGIE-AAYEIEARNQVFLFKD-------DKYW 248 (365)
T ss_dssp EEEETTEEEEEETT--------EEEECCSSCCCCCEEEHHHHCSSCC-SSCC-EEEEEGGGTEEEEEET-------TEEE
T ss_pred EEEcCCeEEEEeCC--------EEEEEcCCCccCCccchhhhccCCC-CCcc-EEEEecCCCEEEEEeC-------CEEE
Confidence 34568899998773 1555543321111122211 1223 1222 22223 3568999977 3578
Q ss_pred EEECCCCCCEE-EEcCCCCCCCC-CccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCce---EEcCCCCCCC
Q 048754 388 VLDLDAKQPTW-IEVSGGAPPLP-RSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMW---REIPTSWSPP 461 (625)
Q Consensus 388 ~~d~~t~~~~W-~~~~~~~~p~~-r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W---~~~~~~~~p~ 461 (625)
+|+..+....+ ..+.....|.. ..-.++... .++++|+|-| +..|.||..+.+..- ..+....+..
T Consensus 249 r~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG--------~~yw~yd~~~~~v~~gyPk~I~~~f~g~ 320 (365)
T 3ba0_A 249 LISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD--------NQYWRYDERRQMMDPGYPKLITKNFQGI 320 (365)
T ss_dssp ECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCCCCHHHHSTTC
T ss_pred EEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC--------CEEEEEeCCcceecCCCCcchhhcCCCC
Confidence 88654321122 23443222321 122334444 3468999977 478999964322000 0010001111
Q ss_pred CCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 462 SRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 462 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
+..-.++....++++|+|=| +..|+||..
T Consensus 321 p~~iDaA~~~~~g~~YfFkg-----------~~ywr~d~~ 349 (365)
T 3ba0_A 321 GPKIDAVFYSKNKYYYFFQG-----------SNQFEYDFL 349 (365)
T ss_dssp CSSCSEEEEETTTEEEEEET-----------TEEEEEETT
T ss_pred CCccceeeEecCCcEEEEeC-----------CEEEEEECC
Confidence 22223444454568999866 678999987
No 311
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=74.74 E-value=44 Score=29.41 Aligned_cols=152 Identities=12% Similarity=0.095 Sum_probs=75.1
Q ss_pred eEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEccc--CCCCCCccceeEEEEc-CCEEEEEccCCCCCccccEE
Q 048754 311 ACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSV--KSSPPGRWGHTLSSLN-GSWLVVFGGCGRQGLLNDVF 387 (625)
Q Consensus 311 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~ 387 (625)
++...+.+|+|=|. .+|+++.......-..|.. ++.|. ... ++.... ++++|+|-| +..|
T Consensus 29 i~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG-------~~~w 91 (207)
T 1pex_A 29 ITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRG-------RKFW 91 (207)
T ss_dssp EEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEET-------TEEE
T ss_pred EEeCCCcEEEEECC--------EEEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEcc-------CEEE
Confidence 33468899999773 1666664331111122211 12232 222 222232 568999987 3578
Q ss_pred EEECCCCCC-EEEEcCCCCCCCC-CccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCc--e-EEcCC--CCC
Q 048754 388 VLDLDAKQP-TWIEVSGGAPPLP-RSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPM--W-REIPT--SWS 459 (625)
Q Consensus 388 ~~d~~t~~~-~W~~~~~~~~p~~-r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~--W-~~~~~--~~~ 459 (625)
+|+-.+-.. --..+.....|.. ..-.++... +++++|+|-| +..|.||..+.+.. . ..+.. .+.
T Consensus 92 ~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG--------~~ywr~d~~~~~~d~gyPr~i~~~~~Gi 163 (207)
T 1pex_A 92 ALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG--------NQVWRYDDTNHIMDKDYPRLIEEDFPGI 163 (207)
T ss_dssp EESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET--------TEEEEEETTTTEECSSCCCBHHHHSTTS
T ss_pred EEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC--------CEEEEEeCcCccccCCCCccHHHcCCCC
Confidence 887432211 1234443222321 112233333 3468999987 47799996542210 0 00100 112
Q ss_pred CCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 460 PPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 460 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
|. .-.++... ++++|+|-| +..|+||..
T Consensus 164 p~--~iDaAf~~-~g~~YfFkg-----------~~y~rf~~~ 191 (207)
T 1pex_A 164 GD--KVDAVYEK-NGYIYFFNG-----------PIQFEYSIW 191 (207)
T ss_dssp CS--CCSEEEEE-TTEEEEEET-----------TEEEEEETT
T ss_pred CC--CccEEEEc-CCcEEEEEC-----------CEEEEEeCC
Confidence 22 12233333 559999966 678999876
No 312
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=74.70 E-value=83 Score=32.52 Aligned_cols=105 Identities=10% Similarity=-0.038 Sum_probs=49.8
Q ss_pred EEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC-CcceEEEECC-cEEEEEcCCcCCCCcccccCceEEEEc
Q 048754 423 LVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR-LGHSLSVYGR-TKVLMFGGLAKSGHLRLRSGESYTIDL 500 (625)
Q Consensus 423 iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r-~~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~~~~~d~ 500 (625)
+++.|+.+ ..+.+||+.+.... ..+.. ..... .-.++....+ +.+++.|+.+ ..+.+||+
T Consensus 175 ~l~~~~~d------~~v~vwd~~~~~~~-~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~vwd~ 236 (615)
T 1pgu_A 175 RSMTVGDD------GSVVFYQGPPFKFS-ASDRT--HHKQGSFVRDVEFSPDSGEFVITVGSD---------RKISCFDG 236 (615)
T ss_dssp EEEEEETT------TEEEEEETTTBEEE-EEECS--SSCTTCCEEEEEECSTTCCEEEEEETT---------CCEEEEET
T ss_pred EEEEEeCC------CcEEEEeCCCccee-eeecc--cCCCCceEEEEEECCCCCCEEEEEeCC---------CeEEEEEC
Confidence 66666632 36788886543211 11111 11100 1223333344 5677776653 57889998
Q ss_pred CCCCCceeEeeeccccCcCCCCCCC-CCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 501 GDEEPQWKQLECNAFTGVGSQSAVV-PPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 501 ~~~~~~W~~~~~~~~~~~~~~~~~~-p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
.+. + .+.... .. ........++.+.++..++.|+. ...+.+||+.
T Consensus 237 ~~~--~--~~~~~~---------~~~~~~~~~v~~~~~~~~~~l~~~~~------d~~i~~wd~~ 282 (615)
T 1pgu_A 237 KSG--E--FLKYIE---------DDQEPVQGGIFALSWLDSQKFATVGA------DATIRVWDVT 282 (615)
T ss_dssp TTC--C--EEEECC---------BTTBCCCSCEEEEEESSSSEEEEEET------TSEEEEEETT
T ss_pred CCC--C--EeEEec---------ccccccCCceEEEEEcCCCEEEEEcC------CCcEEEEECC
Confidence 732 2 222220 00 01111222333326667777764 3468889983
No 313
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=74.58 E-value=63 Score=31.06 Aligned_cols=55 Identities=5% Similarity=-0.048 Sum_probs=26.1
Q ss_pred CeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECC-CC
Q 048754 333 DTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLD-AK 394 (625)
Q Consensus 333 ~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~-t~ 394 (625)
.++.|+++..+.+.+.+.....+....-..++.. +++.+|+... + .+.+||+. ++
T Consensus 15 ~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~-~------~v~~~~~~~~g 71 (365)
T 1jof_A 15 AIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-K------KWSSFAVKSPT 71 (365)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-T------EEEEEEEEETT
T ss_pred cEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEcc-c------eEEEEEECCCC
Confidence 4777776544356665532111111111122322 3455665543 1 57788876 55
No 314
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=74.30 E-value=1.1 Score=36.20 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=32.2
Q ss_pred ccccccC---CCCCCcccccccccccCc-hhHHHHhhhcccCchhh
Q 048754 192 SAQYFSG---GHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDV 233 (625)
Q Consensus 192 ~~~~~~~---~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~ 233 (625)
...+++. +..++++|+++++++|++ ++++|..+..++++.+.
T Consensus 14 ~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~ 59 (146)
T 2v0u_A 14 NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETD 59 (146)
T ss_dssp CEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSC
T ss_pred cEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCC
Confidence 3334566 667779999999999999 77888777777776554
No 315
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=74.09 E-value=60 Score=30.65 Aligned_cols=106 Identities=10% Similarity=0.120 Sum_probs=52.8
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCce-EEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEW-RRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W-~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
+.+++.|+.+. .+.+||+.+....- ..+. . ..... .+++...++..++.|+.+ ..+.++|+.+.
T Consensus 54 g~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~--~-h~~~v-~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~ 118 (368)
T 3mmy_A 54 GNFLIAGSWAN------DVRCWEVQDSGQTIPKAQQ--M-HTGPV-LDVCWSDDGSKVFTASCD-----KTAKMWDLSSN 118 (368)
T ss_dssp SEEEEEEETTS------EEEEEEECTTSCEEEEEEE--E-CSSCE-EEEEECTTSSEEEEEETT-----SEEEEEETTTT
T ss_pred ceEEEEECCCC------cEEEEEcCCCCceeEEEec--c-ccCCE-EEEEECcCCCEEEEEcCC-----CcEEEEEcCCC
Confidence 37777777533 27888887521222 1111 1 11111 122222344456666643 36889999887
Q ss_pred CCEEEEcCCCCCCCCCccceEEE--EcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCI--IEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
....+... . ... .+... ..++.+++.|+.+ ..+.+||+.+..
T Consensus 119 --~~~~~~~~--~-~~v-~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~ 162 (368)
T 3mmy_A 119 --QAIQIAQH--D-APV-KTIHWIKAPNYSCVMTGSWD------KTLKFWDTRSSN 162 (368)
T ss_dssp --EEEEEEEC--S-SCE-EEEEEEECSSCEEEEEEETT------SEEEEECSSCSS
T ss_pred --Cceeeccc--c-Cce-EEEEEEeCCCCCEEEEccCC------CcEEEEECCCCc
Confidence 54443321 1 111 22222 2344666766642 368889986654
No 316
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=74.06 E-value=51 Score=33.40 Aligned_cols=18 Identities=22% Similarity=0.062 Sum_probs=14.9
Q ss_pred CcceEEEECCcEEEEEcC
Q 048754 584 WGHSTCVVGGTRVLVLGG 601 (625)
Q Consensus 584 ~~~~~~~~~~~~i~i~GG 601 (625)
..|++++..++.+|.+|-
T Consensus 386 ~~hs~al~~~G~vy~wG~ 403 (473)
T 3of7_A 386 SHHSVAVAQNGIAYSWGF 403 (473)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred CCeEEEEeCCCcEEEeeC
Confidence 358888888889999984
No 317
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=73.89 E-value=72 Score=31.45 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=35.5
Q ss_pred cceEEEEecCCEEEEEecCCCCCCC---CCcEEEEe-CC-CCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcC
Q 048754 530 LDHVAVSMPCGRIIIFGGSIAGLHS---PSQLFLLD-PS-EEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGG 601 (625)
Q Consensus 530 ~~~~~~~~~~~~l~v~GG~~~~~~~---~~~v~~~d-~~-~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG 601 (625)
..|+++...++.||..|-...+... ..+...-. +. ........+. .-..|++++..++.+|.+|-
T Consensus 182 ~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va-------~G~~ht~~l~~~G~v~~wG~ 251 (406)
T 4d9s_A 182 AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA-------CGWRHTISVSYSGALYTYGW 251 (406)
T ss_dssp SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEE-------ECSSEEEEEETTCCEEEEEC
T ss_pred CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEE-------ECCCcEEEEcCCCCEEEeeC
Confidence 4678888878999999843322111 11111110 00 0112233332 23468888888889999993
No 318
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=73.68 E-value=85 Score=32.50 Aligned_cols=154 Identities=15% Similarity=0.162 Sum_probs=73.3
Q ss_pred EEEEEccCCCCCccccEEEEEC--CCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 370 WLVVFGGCGRQGLLNDVFVLDL--DAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 370 ~iyv~GG~~~~~~~~~~~~~d~--~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
++.+.+...+......+|..+. ... . ..+... +..+ ..+...+++.+++..+... ...+||+++.
T Consensus 76 ~~l~~~~~~~g~~~~~l~~~~~~~~g~--~-~~l~~~--~~~~--~~~~s~dg~~~~~~s~~~~------~~~l~d~~~g 142 (582)
T 3o4h_A 76 RVILVRDVSKGAEQHALFKVNTSRPGE--E-QRLEAV--KPMR--ILSGVDTGEAVVFTGATED------RVALYALDGG 142 (582)
T ss_dssp EEEEEEECSTTSCCEEEEEEETTSTTC--C-EECTTS--CSBE--EEEEEECSSCEEEEEECSS------CEEEEEEETT
T ss_pred eEEEEeccCCCCcceEEEEEeccCCCc--c-ccccCC--CCce--eeeeCCCCCeEEEEecCCC------CceEEEccCC
Confidence 5555444311122346777877 443 2 244432 2222 3344556666666554322 2336687665
Q ss_pred CCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCC
Q 048754 448 KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPP 527 (625)
Q Consensus 448 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~ 527 (625)
. ...+.. .+. .+.+.-.+++.+++++....+ ...++++|+. +.+++.+... .
T Consensus 143 ~--~~~l~~--~~~----~~~~~spDG~~la~~~~~~~~-----~~~i~~~d~~--~g~~~~l~~~-------------~ 194 (582)
T 3o4h_A 143 G--LRELAR--LPG----FGFVSDIRGDLIAGLGFFGGG-----RVSLFTSNLS--SGGLRVFDSG-------------E 194 (582)
T ss_dssp E--EEEEEE--ESS----CEEEEEEETTEEEEEEEEETT-----EEEEEEEETT--TCCCEEECCS-------------S
T ss_pred c--EEEeec--CCC----ceEEECCCCCEEEEEEEcCCC-----CeEEEEEcCC--CCCceEeecC-------------C
Confidence 4 555542 121 233333333555544443222 1459999988 4466655322 1
Q ss_pred CccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeE
Q 048754 528 PRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWR 571 (625)
Q Consensus 528 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~ 571 (625)
... .......+++.++.+..+ ....|+++|+ ++.+..
T Consensus 195 ~~~-~~~~~SpDG~~l~~~~~~----~~~~i~~~d~--~~~~~~ 231 (582)
T 3o4h_A 195 GSF-SSASISPGMKVTAGLETA----REARLVTVDP--RDGSVE 231 (582)
T ss_dssp CEE-EEEEECTTSCEEEEEECS----SCEEEEEECT--TTCCEE
T ss_pred Ccc-ccceECCCCCEEEEccCC----CeeEEEEEcC--CCCcEE
Confidence 111 222233366655533321 1358999999 566665
No 319
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=73.64 E-value=58 Score=30.29 Aligned_cols=67 Identities=12% Similarity=0.074 Sum_probs=33.1
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-c--CCEEEEEccCCCCCccccEEEEEC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-N--GSWLVVFGGCGRQGLLNDVFVLDL 391 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~d~ 391 (625)
++.+++.|+.+. .+.+||+.+....+..+..- ......-.+..+ . ++.+++.|+.++ .+.+||+
T Consensus 22 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~d~~~l~s~~~dg-----~v~vwd~ 88 (351)
T 3f3f_A 22 YGRHVATCSSDQ------HIKVFKLDKDTSNWELSDSW--RAHDSSIVAIDWASPEYGRIIASASYDK-----TVKLWEE 88 (351)
T ss_dssp SSSEEEEEETTS------EEEEEEECSSSCCEEEEEEE--ECCSSCEEEEEECCGGGCSEEEEEETTS-----CEEEEEE
T ss_pred CCCEEEEeeCCC------eEEEEECCCCCCcceeccee--ccCCCcEEEEEEcCCCCCCEEEEEcCCC-----eEEEEec
Confidence 344555665432 37788887643445443211 111111222223 2 245677777543 5778887
Q ss_pred CCC
Q 048754 392 DAK 394 (625)
Q Consensus 392 ~t~ 394 (625)
.+.
T Consensus 89 ~~~ 91 (351)
T 3f3f_A 89 DPD 91 (351)
T ss_dssp CTT
T ss_pred CCC
Confidence 664
No 320
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=72.86 E-value=58 Score=29.92 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=30.9
Q ss_pred CCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEcc
Q 048754 539 CGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLA 618 (625)
Q Consensus 539 ~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~ 618 (625)
++ .++.|+. ...+.+||+ .+.+....-. .+.. .-.++....++. ++.|+.++ .+.++++.
T Consensus 236 ~~-~l~~~~~------dg~v~iwd~--~~~~~~~~~~---~~~~-~i~~~~~~~~~~-~~~~~~dg------~i~iw~~~ 295 (313)
T 3odt_A 236 NG-DIVSCGE------DRTVRIWSK--ENGSLKQVIT---LPAI-SIWSVDCMSNGD-IIVGSSDN------LVRIFSQE 295 (313)
T ss_dssp TS-CEEEEET------TSEEEEECT--TTCCEEEEEE---CSSS-CEEEEEECTTSC-EEEEETTS------CEEEEESC
T ss_pred CC-CEEEEec------CCEEEEEEC--CCCceeEEEe---ccCc-eEEEEEEccCCC-EEEEeCCC------cEEEEeCC
Confidence 44 4556664 457899998 4444333221 1111 122344445556 44566443 45666665
Q ss_pred CC
Q 048754 619 SK 620 (625)
Q Consensus 619 ~~ 620 (625)
+.
T Consensus 296 ~~ 297 (313)
T 3odt_A 296 KS 297 (313)
T ss_dssp GG
T ss_pred CC
Confidence 43
No 321
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=72.67 E-value=60 Score=30.01 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=36.8
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS 554 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~ 554 (625)
.+++.|+.+ ..+.++|+......|....... ......-.++....++++++.||.+
T Consensus 220 ~~las~s~D---------~~v~iWd~~~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~g~~las~~~D----- 275 (297)
T 2pm7_B 220 SYMASVSQD---------RTCIIWTQDNEQGPWKKTLLKE----------EKFPDVLWRASWSLSGNVLALSGGD----- 275 (297)
T ss_dssp EEEEEEETT---------SCEEEEEESSTTSCCEEEESSS----------SCCSSCEEEEEECSSSCCEEEEETT-----
T ss_pred eEEEEEECC---------CcEEEEEeCCCCCccceeeeec----------ccCCCcEEEEEECCCCCEEEEEcCC-----
Confidence 667777654 4667777764333454322110 0011111222223367778887753
Q ss_pred CCcEEEEeCCCCCCCeEEEc
Q 048754 555 PSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 555 ~~~v~~~d~~~~~~~W~~v~ 574 (625)
..+.+++.. ....|..+.
T Consensus 276 -~~v~lw~~~-~~g~w~~~~ 293 (297)
T 2pm7_B 276 -NKVTLWKEN-LEGKWEPAG 293 (297)
T ss_dssp -SCEEEEEEC-TTSCEEEC-
T ss_pred -CcEEEEEEC-CCCcEEecc
Confidence 245555552 256888764
No 322
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=72.43 E-value=1.1e+02 Score=32.73 Aligned_cols=61 Identities=10% Similarity=0.033 Sum_probs=29.9
Q ss_pred CCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcC
Q 048754 331 MDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVS 402 (625)
Q Consensus 331 ~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~ 402 (625)
...++++|+.+. +-.++........+.......-++++|..... ++++++|..++ ....+.
T Consensus 90 ~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-------~~i~~~~~~~g--~~~~~~ 150 (723)
T 1xfd_A 90 TGYYVLSKIPHG--DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-------NNIYYCAHVGK--QAIRVV 150 (723)
T ss_dssp CSEEEEEESSSC--CCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-------TEEEEESSSSS--CCEEEE
T ss_pred eeeEEEEECCCC--ceEeccCCccccccccccEECCCCCEEEEEEC-------CeEEEEECCCC--ceEEEe
Confidence 367999999873 44555322111111111111123444433332 36899998877 444443
No 323
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=71.82 E-value=78 Score=30.95 Aligned_cols=65 Identities=9% Similarity=0.024 Sum_probs=35.3
Q ss_pred cceEEEEecCCEEEEEecCCCCCCC---CCcEEEEe-CC-CCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcC
Q 048754 530 LDHVAVSMPCGRIIIFGGSIAGLHS---PSQLFLLD-PS-EEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGG 601 (625)
Q Consensus 530 ~~~~~~~~~~~~l~v~GG~~~~~~~---~~~v~~~d-~~-~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG 601 (625)
..|+++...++.||.+|-...+..- ..+...-. +. ........+. .-..|++++..++++|.+|-
T Consensus 274 ~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia-------~G~~h~~al~~~G~v~~wG~ 343 (389)
T 3kci_A 274 SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIA-------TGSLHCVCCTEDGEVYTWGD 343 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEE-------ECSSEEEEEETTCCEEEEEC
T ss_pred CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEE-------eccCeEEEECCCCCEEEeeC
Confidence 4577777778999999853321111 11111110 00 0112233332 22358888888889999995
No 324
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=71.64 E-value=87 Score=31.41 Aligned_cols=77 Identities=16% Similarity=0.175 Sum_probs=39.1
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCC--CEEEEcCC-CCC--C-CCCccceEEEEcCCEEEEEcCcCCCCceeceE
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQ--PTWIEVSG-GAP--P-LPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDT 439 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~--~~W~~~~~-~~~--p-~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 439 (625)
...+++|+-|..+ +.++++|+.++. .+-.++-. ... + ....-|......++ +||..--+..+.....+
T Consensus 93 ~~r~~l~v~~l~s-----~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 93 IERRFLIVPGLRS-----SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp CCSCEEEEEBTTT-----CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCEEEEccCCC-----CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 3356788777653 579999987551 12222210 000 0 01122444444555 77742112223345789
Q ss_pred EEEecCCCC
Q 048754 440 YLLDLTTDK 448 (625)
Q Consensus 440 ~~~d~~~~~ 448 (625)
.++|.++.+
T Consensus 167 ~vlD~~T~~ 175 (462)
T 2ece_A 167 LMLDHYSFE 175 (462)
T ss_dssp EEECTTTCC
T ss_pred EEEECCCCe
Confidence 999976543
No 325
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=71.59 E-value=0.81 Score=41.84 Aligned_cols=40 Identities=8% Similarity=0.102 Sum_probs=30.1
Q ss_pred ccccccccCCCCCCcccccccccc------------cCc-hhHHHHhhhcccC
Q 048754 190 DQSAQYFSGGHSPLSQHQDICGIL------------QLS-DEVLAHNILSRLT 229 (625)
Q Consensus 190 ~~~~~~~~~~~~~~~~n~~~~~~~------------g~~-~e~~~~~~~~~~~ 229 (625)
.....++|.+..++|+|+++++++ ||+ ++++|.++..+++
T Consensus 32 ~~~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~ 84 (233)
T 3vol_A 32 SANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK 84 (233)
T ss_dssp SSEEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSS
T ss_pred CCcEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcC
Confidence 344445688888889999999988 677 6778777666654
No 326
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=71.14 E-value=71 Score=30.22 Aligned_cols=107 Identities=7% Similarity=0.007 Sum_probs=54.0
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
++..++.|+.++ .+.+||+.+. .-..+... .....-.+.+...++.+++.|+.+ ..+.+||+.+.
T Consensus 138 ~~~~l~s~s~dg-----~i~~wd~~~~--~~~~~~~~--~~~~~i~~~~~~pdg~~lasg~~d------g~i~iwd~~~~ 202 (343)
T 3lrv_A 138 NTEYFIWADNRG-----TIGFQSYEDD--SQYIVHSA--KSDVEYSSGVLHKDSLLLALYSPD------GILDVYNLSSP 202 (343)
T ss_dssp -CCEEEEEETTC-----CEEEEESSSS--CEEEEECC--CSSCCCCEEEECTTSCEEEEECTT------SCEEEEESSCT
T ss_pred CCCEEEEEeCCC-----cEEEEECCCC--cEEEEEec--CCCCceEEEEECCCCCEEEEEcCC------CEEEEEECCCC
Confidence 345667777543 5889999887 33332211 111112233333455677777643 36888998665
Q ss_pred CCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 448 KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 448 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
...-..+.. ....+ -.++....++..++.|+ + +.+.++|+..
T Consensus 203 ~~~~~~~~~-~h~~~--v~~l~fs~~g~~l~s~~-~---------~~v~iwd~~~ 244 (343)
T 3lrv_A 203 DQASSRFPV-DEEAK--IKEVKFADNGYWMVVEC-D---------QTVVCFDLRK 244 (343)
T ss_dssp TSCCEECCC-CTTSC--EEEEEECTTSSEEEEEE-S---------SBEEEEETTS
T ss_pred CCCccEEec-cCCCC--EEEEEEeCCCCEEEEEe-C---------CeEEEEEcCC
Confidence 422123321 01111 12232333445666655 2 4678899874
No 327
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=70.16 E-value=77 Score=30.22 Aligned_cols=184 Identities=11% Similarity=0.145 Sum_probs=90.3
Q ss_pred cccEEEEECC---CCCCEEE-EcCCCCCCC------CCc-cceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCC-
Q 048754 383 LNDVFVLDLD---AKQPTWI-EVSGGAPPL------PRS-WHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKP- 449 (625)
Q Consensus 383 ~~~~~~~d~~---t~~~~W~-~~~~~~~p~------~r~-~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~- 449 (625)
.+.+.+||+. +++..|. .++... .. .++ +.--+++ ..+.+||.+... ...+++++++....
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~-~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~-----~~~I~rV~pdG~~~~ 172 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQ-DEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG-----MPAIARVSADGKTVS 172 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHH-HHHHHHHSSCCEEEEEEEECTTSCEEEEEEES-----SCEEEEECTTSCCEE
T ss_pred CCEEEEEcCCcCCCCCEEEEecCcccc-ccccccccccccCCceeEECCCCCEEEeCCCC-----CCeEEEEeCCCCEEe
Confidence 3568999998 6655676 332100 00 021 1222233 445799965421 04689999864432
Q ss_pred ceEEcCCCCCCCCCCcceEEEEC--CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeec--cccCcCCCCCCC
Q 048754 450 MWREIPTSWSPPSRLGHSLSVYG--RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECN--AFTGVGSQSAVV 525 (625)
Q Consensus 450 ~W~~~~~~~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~--~~~~~~~~~~~~ 525 (625)
.|-. ..+ .+..+.+....++. ++.|++..+ . ..++.||+.. ...| .++.. + .. +..
T Consensus 173 ~~~~-~~~-~~~~~~G~nGIv~~pdg~~Liv~~~-~---------g~L~~fD~~~-pv~~-~v~~~~~G-----~~-~~~ 232 (334)
T 2p9w_A 173 TFAW-ESG-NGGQRPGYSGITFDPHSNKLIAFGG-P---------RALTAFDVSK-PYAW-PEPVKING-----DF-GTL 232 (334)
T ss_dssp EEEE-CCC-CSSSCCSCSEEEEETTTTEEEEESS-S---------SSEEEEECSS-SSCC-CEECEESS-----CC-CCC
T ss_pred eeee-cCC-CcccccCcceEEEeCCCCEEEEEcC-C---------CeEEEEcCCC-Ccce-eecccccC-----Cc-ccc
Confidence 2532 211 22345455444443 336677654 2 6889999873 2333 23211 1 00 001
Q ss_pred CCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCC--CCcceEEEE----CCcEEEEE
Q 048754 526 PPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKF--AWGHSTCVV----GGTRVLVL 599 (625)
Q Consensus 526 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~--r~~~~~~~~----~~~~i~i~ 599 (625)
..+ .+-..... +++++++.-. .+.++.+-- ..+ |......+..|.. -.+.+..++ .+++||++
T Consensus 233 ~~~-dgilp~~~-~G~vllV~~~------~~~~~~l~S--~Dg-W~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv 301 (334)
T 2p9w_A 233 SGT-EKIVTVPV-GNESVLVGAR------APYAISFRS--WDN-WKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYAV 301 (334)
T ss_dssp TTE-EEEEEEEE-TTEEEEEEEE------TTEEEEEEC--SST-TSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEEE
T ss_pred cCc-cccccccc-CCEEEEEEcC------CCCEEEEEC--CCC-cceeEEeeeecCccccCceeEEEEeccccCCeEEEE
Confidence 111 11112223 7787655432 234455543 233 9888765554442 234444444 56899998
Q ss_pred cCcC
Q 048754 600 GGHT 603 (625)
Q Consensus 600 GG~~ 603 (625)
.++-
T Consensus 302 ~~~f 305 (334)
T 2p9w_A 302 SAFF 305 (334)
T ss_dssp ECCG
T ss_pred eeec
Confidence 7654
No 328
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=68.63 E-value=80 Score=31.14 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=13.2
Q ss_pred EEEEEecCCCCCCCCCcEEEEeCC
Q 048754 541 RIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 541 ~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
.+++.|+. ...|.+||+.
T Consensus 291 ~~l~tg~~------dg~v~vwd~~ 308 (430)
T 2xyi_A 291 FILATGSA------DKTVALWDLR 308 (430)
T ss_dssp TEEEEEET------TSEEEEEETT
T ss_pred CEEEEEeC------CCeEEEEeCC
Confidence 47888875 3468899984
No 329
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=68.48 E-value=35 Score=25.65 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=29.4
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCC
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGR 90 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~ 90 (625)
..+|..+.+-+. +..|+++|.+|.+|+-.+...+-|.
T Consensus 27 ~nSPVpVCVRNq---~RkilYaN~aF~elF~Ked~~~sg~ 63 (127)
T 4ew7_A 27 KNSPVPVCVRNQ---SRKIIYANGAFIELFSKEDQPLSGD 63 (127)
T ss_dssp TTCSSCEEEECT---TSCEEEECHHHHHHTTSCCCGGGCT
T ss_pred cCCCccEEEecc---cceEEEecchHHHHhhcccCcccCc
Confidence 349999999999 9999999999999966554444443
No 330
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=68.32 E-value=1e+02 Score=30.95 Aligned_cols=58 Identities=19% Similarity=0.108 Sum_probs=36.2
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
++++|+|-| +..|+||..+. +...-.=...| . -.++... .+++|+|-| +..|.||..+
T Consensus 158 ~~~~yfFkG-------~~yw~yd~~~~--~~~~~~w~gi~--~-iDAA~~~-~g~~YfFkG--------~~y~rfd~~~ 215 (460)
T 1qhu_A 158 DEGILFFQG-------NRKWFWDLTTG--TKKERSWPAVG--N-CTSALRW-LGRYYCFQG--------NQFLRFNPVS 215 (460)
T ss_dssp SSEEEEEET-------TEEEEEETTTT--EEEEECCTTSC--C-CSEEEEE-TTEEEEEET--------TEEEEECTTT
T ss_pred CCeEEEEec-------ccEEEEecccc--eeecccCCCCC--c-cchheee-CCceEEEEC--------CEEEEEcCcc
Confidence 567899987 36899999877 54422111112 2 2344445 468999988 3678888644
No 331
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=66.95 E-value=99 Score=30.26 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=32.1
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+. .+.++|+.+. +-... ......+ ..+...++ .+++.|+.+ ..+..+|..+.
T Consensus 158 dg~~lasgs~Dg------~v~iWd~~~~--~~~~~--~~~h~~~--v~~~s~~~-~~l~sgs~d-----~~i~~~d~~~~ 219 (420)
T 4gga_A 158 EGNYLAVGTSSA------EVQLWDVQQQ--KRLRN--MTSHSAR--VGSLSWNS-YILSSGSRS-----GHIHHHDVRVA 219 (420)
T ss_dssp TSSEEEEEETTS------CEEEEETTTT--EEEEE--ECCCSSC--EEEEEEET-TEEEEEETT-----SEEEEEETTSS
T ss_pred CCCEEEEEECCC------eEEEEEcCCC--cEEEE--EeCCCCc--eEEEeeCC-CEEEEEeCC-----CceeEeeeccc
Confidence 455666676533 2888998762 22211 1112222 22333444 466677643 35777787665
No 332
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=66.87 E-value=64 Score=28.04 Aligned_cols=153 Identities=10% Similarity=0.105 Sum_probs=75.1
Q ss_pred eEEECCEEEEEcccCCCCCCCCCeEEEeccCC-CCceEEccc--CCCCCCccceeEEEEcCCEEEEEccCCCCCccccEE
Q 048754 311 ACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAA-NPEWRRVSV--KSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVF 387 (625)
Q Consensus 311 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~-~~~W~~~~~--~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 387 (625)
++.+.+++|+|-|. .+|+++-... ..-=..|.. ++.|. .... +....++++|+|-| +..|
T Consensus 11 ~~~~~g~~~fFkg~--------~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDA-a~~~~~g~~yfFkg-------~~yw 73 (196)
T 3c7x_A 11 VAMLRGEMFVFKER--------WFWRVRNNQVMDGYPMPIGQFWRGLPA-SINT-AYERKDGKFVFFKG-------DKHW 73 (196)
T ss_dssp EEEETTEEEEEETT--------EEEEEETTEECTTCSEEHHHHSTTCCS-SCCE-EEECTTSCEEEEET-------TEEE
T ss_pred EEEcCCEEEEEECC--------EEEEEECCccCCCCceEhhHhccCCCC-CccE-EEEeCCCcEEEecC-------CEEE
Confidence 33568889999873 1566642210 000122221 12332 2222 22224567999977 4578
Q ss_pred EEECCCCCC-EEEEcCCCC--CCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCce---EEcCCCCCC
Q 048754 388 VLDLDAKQP-TWIEVSGGA--PPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMW---REIPTSWSP 460 (625)
Q Consensus 388 ~~d~~t~~~-~W~~~~~~~--~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W---~~~~~~~~p 460 (625)
+|+..+... --..+...- .|.... .++... .++++|+|-| +..|.||..+.+..- ..+. ....
T Consensus 74 ~~~~~~~~~gyPk~I~~~~~glP~~~I-DAA~~~~~~g~~yfFkG--------~~yw~yd~~~~~v~~gyPk~i~-~~~g 143 (196)
T 3c7x_A 74 VFDEASLEPGYPKHIKELGRGLPTDKI-DAALFWMPNGKTYFFRG--------NKYYRFNEELRAVDSEYPKNIK-VWEG 143 (196)
T ss_dssp EEETTEECTTCSEEGGGTCBSCCSSCC-SEEEEETTTTEEEEEET--------TEEEEEETTTTEECTTCSEEGG-GSBT
T ss_pred EEeCCcccCCCCeEhhhcCCCCCCCcc-cEEEEEccCCEEEEEEC--------CEEEEEeCCcccccCCCCccHH-HCCC
Confidence 888532110 112333211 232222 233333 3568999977 367899965432100 1111 1111
Q ss_pred CCCCcceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 461 PSRLGHSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 461 ~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
.+..-.++....++ ++|++-| +..|+||..
T Consensus 144 ip~~idaAf~~~~~~~~YfFkg-----------~~y~r~d~~ 174 (196)
T 3c7x_A 144 IPESPRGSFMGSDEVFTYFYKG-----------NKYWKFNNQ 174 (196)
T ss_dssp CCSSCSEEEECTTSSEEEEEET-----------TEEEEEETT
T ss_pred cCCCcceeEEecCCCEEEEEEC-----------CEEEEEECC
Confidence 12222344444444 8999866 678999976
No 333
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=66.75 E-value=1.2e+02 Score=32.66 Aligned_cols=111 Identities=13% Similarity=-0.011 Sum_probs=56.8
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.|+++||... -+++||+.+ .++..+.....+....-.+++.-.++.|++... +-+.+||+.+.
T Consensus 482 ~g~lWi~~~t~~------Gl~~~d~~~--~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~-------~Gl~~~~~~~~ 546 (758)
T 3ott_A 482 EGNVWVLLYNNK------GIDKINPRT--REVTKLFADELTGEKSPNYLLCDEDGLLWVGFH-------GGVMRINPKDE 546 (758)
T ss_dssp TSCEEEEETTCS------SEEEEETTT--TEEEEECTTTSCGGGCEEEEEECTTSCEEEEET-------TEEEEECC--C
T ss_pred CCCEEEEccCCC------CcEEEeCCC--CceEEecCCCcCCCcccceEEECCCCCEEEEec-------CceEEEecCCC
Confidence 457888666422 289999876 577765322211111112333333456776432 13889999887
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREI 454 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 454 (625)
++..+.....|. ..-.+.+ .+++.+++... +-+.+||+.+.+ ....
T Consensus 547 --~~~~~~~~gl~~-~~i~~i~-~~~g~lWi~t~--------~Gl~~~~~~~~~--~~~~ 592 (758)
T 3ott_A 547 --SQQSISFGSFSN-NEILSMT-CVKNSIWVSTT--------NGLWIIDRKTMD--ARQQ 592 (758)
T ss_dssp --CCCBCCCCC----CCEEEEE-EETTEEEEEES--------SCEEEEETTTCC--EEEC
T ss_pred --ceEEecccCCCc-cceEEEE-ECCCCEEEECC--------CCeEEEcCCCce--eEEe
Confidence 555443211232 1222332 34667888432 357889987655 5543
No 334
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=66.55 E-value=1.4e+02 Score=31.99 Aligned_cols=159 Identities=9% Similarity=0.029 Sum_probs=75.0
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCC--------CceeceEEEEecCCCCCceEEc
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDA--------GVLLSDTYLLDLTTDKPMWREI 454 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~--------~~~~~~~~~~d~~~~~~~W~~~ 454 (625)
..++++|+.++ ....... +... ...+.+ .++.+++ +..... ......++.+++.+....=..+
T Consensus 189 ~~i~v~dl~tg--~~~~~~~---~~~~--~~~~~wspD~~l~~-~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv 260 (741)
T 1yr2_A 189 RTVKFVGVADG--KPLADEL---KWVK--FSGLAWLGNDALLY-SRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPV 260 (741)
T ss_dssp EEEEEEETTTC--CEEEEEE---EEEE--SCCCEESTTSEEEE-EECCCC--------CCCCCEEEEEETTSCGGGCEEE
T ss_pred EEEEEEECCCC--CCCCccC---CCce--eccEEEECCCEEEE-EEecCcccccccccCCCCCEEEEEECCCCchhCEEE
Confidence 47999999988 5543211 1111 112223 2334443 332221 0123568888875543111122
Q ss_pred CCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCc-eeEeeeccccCcCCCCCCCCCCccceE
Q 048754 455 PTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQ-WKQLECNAFTGVGSQSAVVPPPRLDHV 533 (625)
Q Consensus 455 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~-W~~~~~~~~~~~~~~~~~~p~~r~~~~ 533 (625)
... ...+....+...-.+++.+++........ ..++|++|+++.... |..+... .... ..
T Consensus 261 ~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~----~~~l~~~d~~~~~~~~~~~l~~~------------~~~~--~~ 321 (741)
T 1yr2_A 261 FAT-PELPKRGHGASVSSDGRWVVITSSEGTDP----VNTVHVARVTNGKIGPVTALIPD------------LKAQ--WD 321 (741)
T ss_dssp ECC-TTCTTCEEEEEECTTSCEEEEEEECTTCS----CCEEEEEEEETTEECCCEEEECS------------SSSC--EE
T ss_pred ecc-CCCCeEEEEEEECCCCCEEEEEEEccCCC----cceEEEEECCCCCCcccEEecCC------------CCce--EE
Confidence 111 11122233444444444333333222111 378999998732115 7777533 1111 12
Q ss_pred EEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCC--CCeEEEc
Q 048754 534 AVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEK--PSWRILN 574 (625)
Q Consensus 534 ~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~--~~W~~v~ 574 (625)
.+...++.|++..... .....|+.+|+ ++ ..|..+.
T Consensus 322 ~~~~dg~~l~~~s~~~---~~~~~l~~~d~--~~~~~~~~~l~ 359 (741)
T 1yr2_A 322 FVDGVGDQLWFVSGDG---APLKKIVRVDL--SGSTPRFDTVV 359 (741)
T ss_dssp EEEEETTEEEEEECTT---CTTCEEEEEEC--SSSSCEEEEEE
T ss_pred EEeccCCEEEEEECCC---CCCCEEEEEeC--CCCccccEEEe
Confidence 2223366777764331 22568999998 45 4788875
No 335
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=66.35 E-value=84 Score=29.18 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=36.6
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCC--CCccceEEEE-cCCEEEEEcCc---CCCCc--eece
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPL--PRSWHSSCII-EGSKLVVSGGC---TDAGV--LLSD 438 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~--~r~~~~~~~~-~~~~iyv~GG~---~~~~~--~~~~ 438 (625)
+++++|+.++.. ..++++|+.+.+..+. +.... +. ...-+..+.. +++.+|+.... ..... ....
T Consensus 44 dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~-~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~ 116 (337)
T 1pby_B 44 GGRIAYATVNKS-----ESLVKIDLVTGETLGR-IDLST-PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116 (337)
T ss_dssp TSSEEEEEETTT-----TEEEEEETTTCCEEEE-EECCB-TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred CCCEEEEEeCCC-----CeEEEEECCCCCeEee-EEcCC-cccccccccceEECCCCCEEEEEecccccccccccccCce
Confidence 345788876532 4699999988743332 22111 00 0011222232 45567776311 00100 1257
Q ss_pred EEEEecCCCC
Q 048754 439 TYLLDLTTDK 448 (625)
Q Consensus 439 ~~~~d~~~~~ 448 (625)
+++||+.+..
T Consensus 117 i~v~d~~~~~ 126 (337)
T 1pby_B 117 VALYDAETLS 126 (337)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCc
Confidence 8999986644
No 336
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=66.32 E-value=1.9 Score=34.19 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=27.2
Q ss_pred cccccC---CCCCCcccccccccccCc-hhHHHHhh-hcccC
Q 048754 193 AQYFSG---GHSPLSQHQDICGILQLS-DEVLAHNI-LSRLT 229 (625)
Q Consensus 193 ~~~~~~---~~~~~~~n~~~~~~~g~~-~e~~~~~~-~~~~~ 229 (625)
..+++. +..++++|+++++++|++ ++++|..+ ...+.
T Consensus 32 i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~ 73 (138)
T 2l0w_A 32 FIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLH 73 (138)
T ss_dssp EEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGC
T ss_pred EEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccC
Confidence 334566 667779999999999999 77887763 44443
No 337
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=65.61 E-value=88 Score=29.18 Aligned_cols=56 Identities=9% Similarity=-0.002 Sum_probs=30.0
Q ss_pred ecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCC
Q 048754 537 MPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGE 605 (625)
Q Consensus 537 ~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~ 605 (625)
..++++++.|+. ...+.+||+ .+.+- +.... ......-.++. .++.+++.||.++.
T Consensus 260 s~~~~~l~~~~~------dg~i~vwd~--~~~~~--~~~~~-~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 260 SPRHKFLYTAGS------DGIISCWNL--QTRKK--IKNFA-KFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CTTTCCEEEEET------TSCEEEEET--TTTEE--EEECC-CCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred cCCCCEEEEecC------CceEEEEcC--ccHhH--hhhhh-cccCCCceEec--CCCCeEEEEecCCc
Confidence 335677777775 347889998 33332 32111 11011112222 56688888887765
No 338
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=65.35 E-value=93 Score=29.36 Aligned_cols=161 Identities=9% Similarity=-0.016 Sum_probs=73.3
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
.+.+++.|+.+. .+.+||+.+. +-..+.... ....-.+++...++.+++.|+.++ .+.+||+.+.
T Consensus 138 ~~~~l~s~s~dg------~i~~wd~~~~--~~~~~~~~~--~~~~i~~~~~~pdg~~lasg~~dg-----~i~iwd~~~~ 202 (343)
T 3lrv_A 138 NTEYFIWADNRG------TIGFQSYEDD--SQYIVHSAK--SDVEYSSGVLHKDSLLLALYSPDG-----ILDVYNLSSP 202 (343)
T ss_dssp -CCEEEEEETTC------CEEEEESSSS--CEEEEECCC--SSCCCCEEEECTTSCEEEEECTTS-----CEEEEESSCT
T ss_pred CCCEEEEEeCCC------cEEEEECCCC--cEEEEEecC--CCCceEEEEECCCCCEEEEEcCCC-----EEEEEECCCC
Confidence 345666676533 2889998773 333221111 111122333334556777777543 6899999877
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCC-CCCCCCCcceEEEECC
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTS-WSPPSRLGHSLSVYGR 473 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~-~~p~~r~~~~~~~~~~ 473 (625)
+..-..+... ....-.+.+...++..++.|+ . +.+.++|+.+..... .+... ....+....+++...+
T Consensus 203 ~~~~~~~~~~---h~~~v~~l~fs~~g~~l~s~~-~------~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 271 (343)
T 3lrv_A 203 DQASSRFPVD---EEAKIKEVKFADNGYWMVVEC-D------QTVVCFDLRKDVGTL-AYPTYTIPEFKTGTVTYDIDDS 271 (343)
T ss_dssp TSCCEECCCC---TTSCEEEEEECTTSSEEEEEE-S------SBEEEEETTSSTTCB-SSCCCBC-----CCEEEEECTT
T ss_pred CCCccEEecc---CCCCEEEEEEeCCCCEEEEEe-C------CeEEEEEcCCCCcce-eecccccccccccceEEEECCC
Confidence 3221233220 011111222223445555555 2 158888976543211 11110 0001111122333334
Q ss_pred cEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeE
Q 048754 474 TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQ 509 (625)
Q Consensus 474 ~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~ 509 (625)
+++++.|+.. ...+.+|+++.....|..
T Consensus 272 g~~l~~~s~~--------d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 272 GKNMIAYSNE--------SNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp SSEEEEEETT--------TTEEEEEEECTTTCSEEE
T ss_pred CCEEEEecCC--------CCcEEEEEEcccccceEe
Confidence 4555554321 145667777554667987
No 339
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=63.71 E-value=2e+02 Score=32.51 Aligned_cols=146 Identities=14% Similarity=0.054 Sum_probs=71.2
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEE-EEecCCCCCceEEcCCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTY-LLDLTTDKPMWREIPTSWSPPS 462 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~-~~d~~~~~~~W~~~~~~~~p~~ 462 (625)
..+++++..+. ....+... +..+..+.... ++ +.+++++. ...+| ++|+.+.. ...+.. . .
T Consensus 317 ~~i~~~~~~~~--~~~~~~~~--~~~~~~~~~~s-dg-~~l~~~s~------~~~l~~~~d~~~~~--~~~l~~--~--~ 378 (1045)
T 1k32_A 317 GQAFIQDVSGT--YVLKVPEP--LRIRYVRRGGD-TK-VAFIHGTR------EGDFLGIYDYRTGK--AEKFEE--N--L 378 (1045)
T ss_dssp TEEEEECTTSS--BEEECSCC--SCEEEEEECSS-SE-EEEEEEET------TEEEEEEEETTTCC--EEECCC--C--C
T ss_pred CEEEEEcCCCC--ceEEccCC--CcceEEeeeEc-CC-CeEEEEEC------CCceEEEEECCCCC--ceEecC--C--c
Confidence 36888888776 55555432 21122222222 34 33343332 14788 88976644 555441 1 1
Q ss_pred CCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEE
Q 048754 463 RLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542 (625)
Q Consensus 463 r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 542 (625)
...+..+...+++.+++++.. ..++++|+.+ .+-..+... ..... .......+++.
T Consensus 379 ~~~~~~~~SpDG~~la~~~~~---------~~v~~~d~~t--g~~~~~~~~------------~~~~v-~~~~~SpDG~~ 434 (1045)
T 1k32_A 379 GNVFAMGVDRNGKFAVVANDR---------FEIMTVDLET--GKPTVIERS------------REAMI-TDFTISDNSRF 434 (1045)
T ss_dssp CSEEEEEECTTSSEEEEEETT---------SEEEEEETTT--CCEEEEEEC------------SSSCC-CCEEECTTSCE
T ss_pred cceeeeEECCCCCEEEEECCC---------CeEEEEECCC--CceEEeccC------------CCCCc-cceEECCCCCe
Confidence 112333344444555555432 5789999984 344444321 11111 22223346676
Q ss_pred EEEecCCC----CCCCCCcEEEEeCCCCCCCeEEE
Q 048754 543 IIFGGSIA----GLHSPSQLFLLDPSEEKPSWRIL 573 (625)
Q Consensus 543 ~v~GG~~~----~~~~~~~v~~~d~~~~~~~W~~v 573 (625)
+++++... .......++++|+ .+.....+
T Consensus 435 la~~~~~~~~~~~~~~~~~i~l~d~--~~g~~~~l 467 (1045)
T 1k32_A 435 IAYGFPLKHGETDGYVMQAIHVYDM--EGRKIFAA 467 (1045)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEET--TTTEEEEC
T ss_pred EEEEecCccccccCCCCCeEEEEEC--CCCcEEEe
Confidence 66665432 1122458999999 45554333
No 340
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=62.85 E-value=1e+02 Score=28.97 Aligned_cols=157 Identities=14% Similarity=0.109 Sum_probs=73.6
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCC---C-
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSW---S- 459 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~---~- 459 (625)
+.++++|+.++ +....... .....-+..+...++.+|+.... ...+.+||++.....-..+.... .
T Consensus 69 ~~i~~~d~~~g--~~~~~~~~--~~~~~p~gia~d~~g~l~v~d~~------~~~v~~~~~~g~~~~~~~~~~~~~~g~~ 138 (329)
T 3fvz_A 69 DTILVIDPNNA--EILQSSGK--NLFYLPHGLSIDTDGNYWVTDVA------LHQVFKLDPHSKEGPLLILGRSMQPGSD 138 (329)
T ss_dssp CCEEEECTTTC--CEEEEECT--TTCSSEEEEEECTTSCEEEEETT------TTEEEEECTTCSSCCSEEESBTTBCCCS
T ss_pred CcEEEEECCCC--eEEeccCC--CccCCceEEEECCCCCEEEEECC------CCEEEEEeCCCCeEEEEEecccCCCCCC
Confidence 36999999877 33322111 00111123333345568886542 24688899754311122222110 0
Q ss_pred CCCCCc-ceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCcc-ceEEEE
Q 048754 460 PPSRLG-HSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRL-DHVAVS 536 (625)
Q Consensus 460 p~~r~~-~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~-~~~~~~ 536 (625)
...... ..+++.. ++.||+..+.. ...+.+||.+ ...-..+...+ .. ....+.... .+..+.
T Consensus 139 ~~~~~~P~~ia~~~~~g~lyv~d~~~--------~~~I~~~~~~--g~~~~~~~~~g---~~--~~~~~~~~~~p~gia~ 203 (329)
T 3fvz_A 139 QNHFCQPTDVAVEPSTGAVFVSDGYC--------NSRIVQFSPS--GKFVTQWGEES---SG--SSPRPGQFSVPHSLAL 203 (329)
T ss_dssp TTCCSSEEEEEECTTTCCEEEEECSS--------CCEEEEECTT--SCEEEEECEEC---CS--SSCCTTEESCEEEEEE
T ss_pred ccccCCCcEEEEeCCCCeEEEEeCCC--------CCeEEEEcCC--CCEEEEeccCC---CC--CCCCCcccCCCcEEEE
Confidence 111112 2344443 56899987521 2678889865 22222222211 00 000011111 223333
Q ss_pred ecC-CEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEE
Q 048754 537 MPC-GRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRIL 573 (625)
Q Consensus 537 ~~~-~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v 573 (625)
-.+ +.|||.... ...|.+||+ ++.+....
T Consensus 204 d~~~g~l~v~d~~------~~~I~~~~~--~~G~~~~~ 233 (329)
T 3fvz_A 204 VPHLDQLCVADRE------NGRIQCFKT--DTKEFVRE 233 (329)
T ss_dssp ETTTTEEEEEETT------TTEEEEEET--TTCCEEEE
T ss_pred ECCCCEEEEEECC------CCEEEEEEC--CCCcEEEE
Confidence 334 799998653 458999998 44555443
No 341
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=62.82 E-value=96 Score=28.63 Aligned_cols=109 Identities=12% Similarity=0.005 Sum_probs=55.3
Q ss_pred CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEE
Q 048754 420 GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTID 499 (625)
Q Consensus 420 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d 499 (625)
++.+|+..-. ...+++||+++.. ...+.. +. .-.+.+...++++|+.. ...+++||
T Consensus 24 ~~~l~~~d~~------~~~i~~~d~~~~~--~~~~~~---~~--~~~~i~~~~dG~l~v~~-----------~~~l~~~d 79 (297)
T 3g4e_A 24 SNSLLFVDIP------AKKVCRWDSFTKQ--VQRVTM---DA--PVSSVALRQSGGYVATI-----------GTKFCALN 79 (297)
T ss_dssp TTEEEEEETT------TTEEEEEETTTCC--EEEEEC---SS--CEEEEEEBTTSSEEEEE-----------TTEEEEEE
T ss_pred CCEEEEEECC------CCEEEEEECCCCc--EEEEeC---CC--ceEEEEECCCCCEEEEE-----------CCeEEEEE
Confidence 4678886542 2478999987654 333322 11 11234444455666642 15788999
Q ss_pred cCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC-----CCCCCcEEEEeC
Q 048754 500 LGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG-----LHSPSQLFLLDP 563 (625)
Q Consensus 500 ~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~-----~~~~~~v~~~d~ 563 (625)
++ +.+++.+.... ...+..+.. ....-.++++|+..-.... ......+|++++
T Consensus 80 ~~--~g~~~~~~~~~--------~~~~~~~~~-di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~ 137 (297)
T 3g4e_A 80 WK--EQSAVVLATVD--------NDKKNNRFN-DGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP 137 (297)
T ss_dssp TT--TTEEEEEEECC--------TTCSSEEEE-EEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT
T ss_pred CC--CCcEEEEEecC--------CCCCCCCCC-CEEECCCCCEEEecCCcccccccccCCCcEEEEEEC
Confidence 88 44666665431 011212222 2333336777764211100 112357889987
No 342
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=62.80 E-value=1.1e+02 Score=29.52 Aligned_cols=152 Identities=11% Similarity=0.036 Sum_probs=74.5
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCC--CCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEec
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSG--GAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDL 444 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~--~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~ 444 (625)
++++|+|=|. .+|+++.......-..+.. ...|. .. -++... .++++|+|-| +..|+|+.
T Consensus 190 ~g~~~fFkg~-------~~Wr~~~~~~~~~p~~I~~~wpgLP~-~i-DAa~~~~~~g~~~fFkg--------~~yWr~~~ 252 (365)
T 3ba0_A 190 GNKIFFFKDR-------FFWLKVSERPKTSVNLISSLWPTLPS-GI-EAAYEIEARNQVFLFKD--------DKYWLISN 252 (365)
T ss_dssp TTEEEEEETT-------EEEECCSSCCCCCEEEHHHHCSSCCS-SC-CEEEEEGGGTEEEEEET--------TEEEECST
T ss_pred CCeEEEEeCC-------EEEEEcCCCccCCccchhhhccCCCC-Cc-cEEEEecCCCEEEEEeC--------CEEEEEcC
Confidence 5678888762 4666654432111122221 01131 12 233333 3568999977 36777764
Q ss_pred CCCCCce-EEcCCCCCCCC-CCcceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeee-ccccCcCC
Q 048754 445 TTDKPMW-REIPTSWSPPS-RLGHSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLEC-NAFTGVGS 520 (625)
Q Consensus 445 ~~~~~~W-~~~~~~~~p~~-r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~-~~~~~~~~ 520 (625)
......+ ..+..-+.|.. ..--++.... ++++|+|-| +..|+||... . .+.. .|....
T Consensus 253 ~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG-----------~~yw~yd~~~--~---~v~~gyPk~I~-- 314 (365)
T 3ba0_A 253 LRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD-----------NQYWRYDERR--Q---MMDPGYPKLIT-- 314 (365)
T ss_dssp TSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET-----------TEEEEEETTT--T---EECSSCCCCHH--
T ss_pred CcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC-----------CEEEEEeCCc--c---eecCCCCcchh--
Confidence 2212112 23332123431 1112333333 458999965 6889999762 1 1211 110000
Q ss_pred CCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 521 QSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 521 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
.+.+..+..-.+++...++++|.|=|. ..|+||.
T Consensus 315 -~~f~g~p~~iDaA~~~~~g~~YfFkg~--------~ywr~d~ 348 (365)
T 3ba0_A 315 -KNFQGIGPKIDAVFYSKNKYYYFFQGS--------NQFEYDF 348 (365)
T ss_dssp -HHSTTCCSSCSEEEEETTTEEEEEETT--------EEEEEET
T ss_pred -hcCCCCCCccceeeEecCCcEEEEeCC--------EEEEEEC
Confidence 011122333446666657889999663 7899997
No 343
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=62.29 E-value=2.1 Score=32.07 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=23.6
Q ss_pred CCCCcccccccccccCc-hhHHHHhh-hcccCc
Q 048754 200 HSPLSQHQDICGILQLS-DEVLAHNI-LSRLTP 230 (625)
Q Consensus 200 ~~~~~~n~~~~~~~g~~-~e~~~~~~-~~~~~~ 230 (625)
..++++|+++++++|++ ++++|..+ ...+++
T Consensus 14 g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~ 46 (110)
T 1byw_A 14 CAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHG 46 (110)
T ss_dssp CBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCC
T ss_pred CcEEEECHHHHHHhCCCHHHHccCCCccccccC
Confidence 55669999999999999 78887762 444443
No 344
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=62.12 E-value=1.1e+02 Score=28.90 Aligned_cols=147 Identities=12% Similarity=0.076 Sum_probs=71.8
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+|+.+... ..+++||+.+ .....+.. +. .-.+.+...++++++... +.+++||+.++
T Consensus 60 ~~~l~~~d~~~------~~i~~~d~~~--~~~~~~~~---~~--~v~~i~~~~dg~l~v~~~-------~gl~~~d~~~g 119 (326)
T 2ghs_A 60 SGTAWWFNILE------RELHELHLAS--GRKTVHAL---PF--MGSALAKISDSKQLIASD-------DGLFLRDTATG 119 (326)
T ss_dssp TTEEEEEEGGG------TEEEEEETTT--TEEEEEEC---SS--CEEEEEEEETTEEEEEET-------TEEEEEETTTC
T ss_pred CCEEEEEECCC------CEEEEEECCC--CcEEEEEC---CC--cceEEEEeCCCeEEEEEC-------CCEEEEECCCC
Confidence 36788876542 2489999876 34443321 11 112333334567777542 24999999888
Q ss_pred CCEEEEcCCCC--CCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC
Q 048754 395 QPTWIEVSGGA--PPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG 472 (625)
Q Consensus 395 ~~~W~~~~~~~--~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 472 (625)
+...+.... .+..+. ...+.-.++.+|+.............++.++ +.+ ...+... .. ...+.+...
T Consensus 120 --~~~~~~~~~~~~~~~~~-~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~--~~~~~~~-~~---~~~~i~~s~ 188 (326)
T 2ghs_A 120 --VLTLHAELESDLPGNRS-NDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK--VTKLFAD-IS---IPNSICFSP 188 (326)
T ss_dssp --CEEEEECSSTTCTTEEE-EEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE--EEEEEEE-ES---SEEEEEECT
T ss_pred --cEEEEeeCCCCCCCCCC-CCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc--EEEeeCC-Cc---ccCCeEEcC
Confidence 666553321 111122 2222333446776321111111234688888 333 4443211 11 112333333
Q ss_pred Cc-EEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 473 RT-KVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 473 ~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
++ .+|+.... ...+++||+.
T Consensus 189 dg~~lyv~~~~---------~~~I~~~d~~ 209 (326)
T 2ghs_A 189 DGTTGYFVDTK---------VNRLMRVPLD 209 (326)
T ss_dssp TSCEEEEEETT---------TCEEEEEEBC
T ss_pred CCCEEEEEECC---------CCEEEEEEcc
Confidence 33 57776432 2678999875
No 345
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=62.05 E-value=1.2e+02 Score=29.55 Aligned_cols=216 Identities=12% Similarity=0.163 Sum_probs=108.0
Q ss_pred eEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEE--EEC--CCCC-CEEEEcCCCCCCC
Q 048754 334 TFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFV--LDL--DAKQ-PTWIEVSGGAPPL 408 (625)
Q Consensus 334 ~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~--~d~--~t~~-~~W~~~~~~~~p~ 408 (625)
-|-+-..-....|++-..+..|..---|+.|.++++ -|.+|=..+...-.++=+ |.. .+.. ..-+.++.. . .
T Consensus 260 ~W~~~T~F~~spW~~t~L~~i~~vTe~HSFa~i~~~-~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~se-y-~ 336 (670)
T 3ju4_A 260 NWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNN-GFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSE-Y-E 336 (670)
T ss_dssp EEEEEECSTTSCCEEEECCSCTTCSEEEEEEECSSS-CEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGG-G-C
T ss_pred eeeeeeeeccCCceecccccccceeeeeeeeEecCC-ceEEEeccCCCCcceeeEEEecccccCCcceeeeechhh-h-c
Confidence 455544444478998776777766677899988664 556663322222222222 211 1111 123344432 1 1
Q ss_pred CCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC--CcceEEEECCcEEEEEcCCcCCC
Q 048754 409 PRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR--LGHSLSVYGRTKVLMFGGLAKSG 486 (625)
Q Consensus 409 ~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r--~~~~~~~~~~~~l~v~GG~~~~~ 486 (625)
+-+.--++-+-++.+|+.--.+....+-+.+.+-+....+ |+.+.. |... .....+.+++ .||+||-....+
T Consensus 337 ~~AsEPCvkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~--w~slrf---p~nvHhtnlPFakvgD-~l~mFgsERA~n 410 (670)
T 3ju4_A 337 PDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQT--WESLRF---PHNVHHTTLPFAKVGD-DLIMFGSERAEN 410 (670)
T ss_dssp TTEEEEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSS--CEEEEC---TTCCCSSCCCEEEETT-EEEEEEECSSTT
T ss_pred cccccchhhhhCCEEEEEecCcCCCCCcceeeeecccCCc--hhheec---cccccccCCCcceeCC-EEEEEecccccc
Confidence 2222223333356899885334443455667776644444 988763 2111 1112345566 999998654321
Q ss_pred C---------cccccCceE--EEEcCC---CCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEE-EEecCCCC
Q 048754 487 H---------LRLRSGESY--TIDLGD---EEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRII-IFGGSIAG 551 (625)
Q Consensus 487 ~---------~~~~~~~~~--~~d~~~---~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~-v~GG~~~~ 551 (625)
. ....+...+ +.+.+. +..+|..+... .. .|.....-.+..++++.++.|| ||||.+.-
T Consensus 411 EWE~G~pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdq----IY--qG~ivNsavGVGSv~vKD~~lyyiFGgEd~~ 484 (670)
T 3ju4_A 411 EWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQ----IY--QGGIVNSGVGVGSVVVKDNYIYYMFGGEDHF 484 (670)
T ss_dssp CSSTTCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEEC----BB--CCSSSCCCSEEEEEEEETTEEEEEEEEBCSC
T ss_pred ccccCCCcccccccCCceEEEEeecccCCccceEEEEeecc----ee--ccccccccccceeEEEeCCEEEEEecCcccC
Confidence 1 111122222 233332 24567766543 11 1233333345556666577765 88887521
Q ss_pred ----------------CCCCCcEEEEeCC
Q 048754 552 ----------------LHSPSQLFLLDPS 564 (625)
Q Consensus 552 ----------------~~~~~~v~~~d~~ 564 (625)
.....|+|+|.++
T Consensus 485 np~s~gdN~~k~~~~~~Ghp~dlY~~ri~ 513 (670)
T 3ju4_A 485 NPWTYGDNSAKDPFKSDGHPSDLYCYKMK 513 (670)
T ss_dssp CCCTTTTTTTCCTTSTTCCCCEEEEEEEE
T ss_pred CccccccccccCccccCCCCcceEEEEEE
Confidence 1125799998764
No 346
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=61.07 E-value=1.2e+02 Score=29.06 Aligned_cols=148 Identities=10% Similarity=0.032 Sum_probs=71.4
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQ 395 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~ 395 (625)
+.+++.|+.+. .+.++|+.. .....+....... ..-.+++...++..++.|+.+ ..+.+||+...
T Consensus 131 ~~~l~s~~~d~------~i~iwd~~~--~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~- 195 (383)
T 3ei3_B 131 TNQLFVSSIRG------ATTLRDFSG--SVIQVFAKTDSWD-YWYCCVDVSVSRQMLATGDST-----GRLLLLGLDGH- 195 (383)
T ss_dssp EEEEEEEETTT------EEEEEETTS--CEEEEEECCCCSS-CCEEEEEEETTTTEEEEEETT-----SEEEEEETTSC-
T ss_pred CCEEEEEeCCC------EEEEEECCC--CceEEEeccCCCC-CCeEEEEECCCCCEEEEECCC-----CCEEEEECCCC-
Confidence 36666666432 378888876 4555443111111 111223333344566677644 36888998544
Q ss_pred CEEEEcCCCCCCCCCccceEEEEcCCE-EEEEcCcCCCCceeceEEEEecCCCCC--ceEEcCCCCCCCCCCcceEEEEC
Q 048754 396 PTWIEVSGGAPPLPRSWHSSCIIEGSK-LVVSGGCTDAGVLLSDTYLLDLTTDKP--MWREIPTSWSPPSRLGHSLSVYG 472 (625)
Q Consensus 396 ~~W~~~~~~~~p~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~~--~W~~~~~~~~p~~r~~~~~~~~~ 472 (625)
....+... .. .-.+.+...++. +++.|+.+ ..+.+||+.+... ....... . ...-.++....
T Consensus 196 -~~~~~~~h---~~-~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~--~--~~~v~~~~~s~ 260 (383)
T 3ei3_B 196 -EIFKEKLH---KA-KVTHAEFNPRCDWLMATSSVD------ATVKLWDLRNIKDKNSYIAEMP--H--EKPVNAAYFNP 260 (383)
T ss_dssp -EEEEEECS---SS-CEEEEEECSSCTTEEEEEETT------SEEEEEEGGGCCSTTCEEEEEE--C--SSCEEEEEECT
T ss_pred -EEEEeccC---CC-cEEEEEECCCCCCEEEEEeCC------CEEEEEeCCCCCcccceEEEec--C--CCceEEEEEcC
Confidence 33344321 11 112222223334 66766632 3678889765221 1211111 1 11112333333
Q ss_pred -CcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 473 -RTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 473 -~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
++.+++.|+.+ ..+.+||+.+
T Consensus 261 ~~~~~l~~~~~d---------~~i~iwd~~~ 282 (383)
T 3ei3_B 261 TDSTKLLTTDQR---------NEIRVYSSYD 282 (383)
T ss_dssp TTSCEEEEEESS---------SEEEEEETTB
T ss_pred CCCCEEEEEcCC---------CcEEEEECCC
Confidence 44666776653 5788888874
No 347
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=60.97 E-value=1.1 Score=47.80 Aligned_cols=44 Identities=7% Similarity=-0.009 Sum_probs=35.4
Q ss_pred cccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHh
Q 048754 195 YFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGS 238 (625)
Q Consensus 195 ~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~ 238 (625)
+.|.++.+.++|+++++++||+ ++.+|...+..+++++...+..
T Consensus 533 ~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~ 577 (635)
T 4eho_A 533 ITDAEGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRN 577 (635)
T ss_dssp EEETTCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHH
T ss_pred EECCCCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHH
Confidence 3377777779999999999999 8888888888888877665543
No 348
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=60.93 E-value=1.7e+02 Score=30.98 Aligned_cols=104 Identities=4% Similarity=-0.128 Sum_probs=46.4
Q ss_pred CeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCC----CccccEEEEECCCCCCEEEEcCCCCCCC
Q 048754 333 DTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQ----GLLNDVFVLDLDAKQPTWIEVSGGAPPL 408 (625)
Q Consensus 333 ~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~d~~t~~~~W~~~~~~~~p~ 408 (625)
.++++|+.+. +-..+..........-.+.+...+++.++++..... .....++++|+.++ ....+.......
T Consensus 38 ~i~~~d~~~g--~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~~~~ 113 (723)
T 1xfd_A 38 TVRLWNVETN--TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG--DPQSLDPPEVSN 113 (723)
T ss_dssp CEEEBCGGGC--CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC--CCEECCCTTCCS
T ss_pred CEEEEECCCC--cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCC--ceEeccCCcccc
Confidence 4888888773 333332111100001122222233344444433221 13468999999988 445555321111
Q ss_pred CCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 409 PRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 409 ~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
.+..+.+..-++ +.++++.. ..++++|+.+..
T Consensus 114 ~~~~~~~~SPdG-~~la~~~~-------~~i~~~~~~~g~ 145 (723)
T 1xfd_A 114 AKLQYAGWGPKG-QQLIFIFE-------NNIYYCAHVGKQ 145 (723)
T ss_dssp CCCSBCCBCSST-TCEEEEET-------TEEEEESSSSSC
T ss_pred ccccccEECCCC-CEEEEEEC-------CeEEEEECCCCc
Confidence 111112222234 33344331 368888876654
No 349
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=60.57 E-value=1.1e+02 Score=28.68 Aligned_cols=240 Identities=17% Similarity=0.118 Sum_probs=113.4
Q ss_pred CCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCC----CCCC
Q 048754 332 DDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSG----GAPP 407 (625)
Q Consensus 332 ~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~----~~~p 407 (625)
+.++++|..+ .+..... ..... ..-+.+++..++.+|+..... +.+.+||+......-..+.. +..+
T Consensus 69 ~~i~~~d~~~--g~~~~~~-~~~~~-~~p~gia~d~~g~l~v~d~~~-----~~v~~~~~~g~~~~~~~~~~~~~~g~~~ 139 (329)
T 3fvz_A 69 DTILVIDPNN--AEILQSS-GKNLF-YLPHGLSIDTDGNYWVTDVAL-----HQVFKLDPHSKEGPLLILGRSMQPGSDQ 139 (329)
T ss_dssp CCEEEECTTT--CCEEEEE-CTTTC-SSEEEEEECTTSCEEEEETTT-----TEEEEECTTCSSCCSEEESBTTBCCCST
T ss_pred CcEEEEECCC--CeEEecc-CCCcc-CCceEEEECCCCCEEEEECCC-----CEEEEEeCCCCeEEEEEecccCCCCCCc
Confidence 3588888865 3333221 11111 111233433455688876532 46888998654101112211 0001
Q ss_pred CCCccceEEEEc--CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCC-----CCC-CCcceEEEECC-cEEEE
Q 048754 408 LPRSWHSSCIIE--GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWS-----PPS-RLGHSLSVYGR-TKVLM 478 (625)
Q Consensus 408 ~~r~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~-----p~~-r~~~~~~~~~~-~~l~v 478 (625)
.....-..+.++ ++.+||..++. .+.+.+||.+. .. -..+...+. +.. ..-+++++-.+ +.||+
T Consensus 140 ~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g-~~-~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v 212 (329)
T 3fvz_A 140 NHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSG-KF-VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV 212 (329)
T ss_dssp TCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTS-CE-EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEE
T ss_pred cccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCC-CE-EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEE
Confidence 111122233443 57899987521 24688888532 21 222221100 111 11234544444 68999
Q ss_pred EcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC-CCCCCc
Q 048754 479 FGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG-LHSPSQ 557 (625)
Q Consensus 479 ~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~-~~~~~~ 557 (625)
.... ...+.+||+++ .+....-.. ..... ....+....+.+++..|...- ......
T Consensus 213 ~d~~---------~~~I~~~~~~~--G~~~~~~~~-----------~~~~~-~~~~~~~~pg~~~~~~g~~~v~~~~~~~ 269 (329)
T 3fvz_A 213 ADRE---------NGRIQCFKTDT--KEFVREIKH-----------ASFGR-NVFAISYIPGFLFAVNGKPYFGDQEPVQ 269 (329)
T ss_dssp EETT---------TTEEEEEETTT--CCEEEEECC-----------TTTTT-CEEEEEEETTEEEEEECCCCTTCSCCCC
T ss_pred EECC---------CCEEEEEECCC--CcEEEEEec-----------cccCC-CcceeeecCCEEEEeCCCEEeccCCCcE
Confidence 8643 36788999873 233222111 01111 112223324777777765321 222468
Q ss_pred EEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccC
Q 048754 558 LFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 558 v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
++++|+ .+.+....-..+ ......-++.++..++.|||.... -+.|++|+++.
T Consensus 270 v~~~~~--~~g~~~~~~~~~-~~~~~~p~~ia~~~dG~lyvad~~------~~~I~~~~~~~ 322 (329)
T 3fvz_A 270 GFVMNF--SSGEIIDVFKPV-RKHFDMPHDIVASEDGTVYIGDAH------TNTVWKFTLTE 322 (329)
T ss_dssp EEEEET--TTCCEEEEECCS-SSCCSSEEEEEECTTSEEEEEESS------SCCEEEEEEEE
T ss_pred EEEEEc--CCCeEEEEEcCC-CCccCCeeEEEECCCCCEEEEECC------CCEEEEEeCCc
Confidence 999998 455544432111 111222244555566788887642 24678888754
No 350
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=59.93 E-value=1.8e+02 Score=30.83 Aligned_cols=148 Identities=15% Similarity=0.125 Sum_probs=67.4
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceE-EcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWR-RVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~-~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.+++.|+.+. .+.++|+.+. .-. .+. . ..... .+++...++..++.|+.++ .+.++|...
T Consensus 441 ~g~~l~sgs~Dg------~v~vwd~~~~--~~~~~~~--~-h~~~v-~~~~~s~~~~~l~s~s~D~-----~i~iwd~~~ 503 (694)
T 3dm0_A 441 DGQFALSGSWDG------ELRLWDLAAG--VSTRRFV--G-HTKDV-LSVAFSLDNRQIVSASRDR-----TIKLWNTLG 503 (694)
T ss_dssp TSSEEEEEETTS------EEEEEETTTT--EEEEEEE--C-CSSCE-EEEEECTTSSCEEEEETTS-----CEEEECTTS
T ss_pred CCCEEEEEeCCC------cEEEEECCCC--cceeEEe--C-CCCCE-EEEEEeCCCCEEEEEeCCC-----EEEEEECCC
Confidence 455666666533 3888888762 221 111 1 11111 1222223444566666543 477788755
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEEcCC---EEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEE
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCIIEGS---KLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSV 470 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~---~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~ 470 (625)
. .-..+.... ...+..-.++.+..+ ..++.|+.+ ..+.++|+.+... -..+.. .. ..-.+++.
T Consensus 504 ~--~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~vwd~~~~~~-~~~~~~--h~--~~v~~v~~ 569 (694)
T 3dm0_A 504 E--CKYTISEGG-EGHRDWVSCVRFSPNTLQPTIVSASWD------KTVKVWNLSNCKL-RSTLAG--HT--GYVSTVAV 569 (694)
T ss_dssp C--EEEEECSST-TSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTCCE-EEEECC--CS--SCEEEEEE
T ss_pred C--cceeeccCC-CCCCCcEEEEEEeCCCCcceEEEEeCC------CeEEEEECCCCcE-EEEEcC--CC--CCEEEEEE
Confidence 4 222222110 111111223333221 355555532 3578888765431 112221 11 11123333
Q ss_pred ECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 471 YGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 471 ~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
..++.+++.|+.+ ..+.++|+.+
T Consensus 570 spdg~~l~sg~~D---------g~i~iwd~~~ 592 (694)
T 3dm0_A 570 SPDGSLCASGGKD---------GVVLLWDLAE 592 (694)
T ss_dssp CTTSSEEEEEETT---------SBCEEEETTT
T ss_pred eCCCCEEEEEeCC---------CeEEEEECCC
Confidence 3455777777754 5677888873
No 351
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=59.66 E-value=2.8 Score=33.76 Aligned_cols=47 Identities=6% Similarity=0.082 Sum_probs=34.9
Q ss_pred cCCCCCCcccccccccccCc--hhHHHHhhhcccCchhhh--hHHhHHHHH
Q 048754 197 SGGHSPLSQHQDICGILQLS--DEVLAHNILSRLTPRDVA--SIGSVCRRI 243 (625)
Q Consensus 197 ~~~~~~~~~n~~~~~~~g~~--~e~~~~~~~~~~~~~~~~--~~~~~~~~~ 243 (625)
+.+++++++..+..+....+ +|++|..|.++.|++|.. .+..+.+.+
T Consensus 14 ~~dGKf~~vDq~~~r~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~v 64 (132)
T 1oj5_A 14 DTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEV 64 (132)
T ss_dssp CTTCCEEEEECHHHHTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHH
T ss_pred cCCCcEEEEecccccccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 66777888888655544445 899999999999999965 665555543
No 352
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=59.40 E-value=1.2e+02 Score=28.52 Aligned_cols=74 Identities=7% Similarity=0.066 Sum_probs=39.4
Q ss_pred CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEE-ecCCEEEEEecCCC
Q 048754 472 GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVS-MPCGRIIIFGGSIA 550 (625)
Q Consensus 472 ~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~~l~v~GG~~~ 550 (625)
.++.+++.|+.+ ..+.++|+......+..+... ........++. ..++.+++.|+.+
T Consensus 117 p~g~~las~s~D---------~~v~iwd~~~~~~~~~~~~~~------------~~h~~~v~~v~~~p~~~~l~s~s~D- 174 (330)
T 2hes_X 117 NDGYYLATCSRD---------KSVWIWETDESGEEYECISVL------------QEHSQDVKHVIWHPSEALLASSSYD- 174 (330)
T ss_dssp TTSCEEEEEETT---------SCEEEEECCTTCCCCEEEEEE------------CCCSSCEEEEEECSSSSEEEEEETT-
T ss_pred CCCCEEEEEeCC---------CEEEEEeccCCCCCeEEEEEe------------ccCCCceEEEEECCCCCEEEEEcCC-
Confidence 344667777653 567788884323355555443 11111122333 3356777877753
Q ss_pred CCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 551 GLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 551 ~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
..+.++|+ .+..|..+.
T Consensus 175 -----~~i~iW~~--~~~~~~~~~ 191 (330)
T 2hes_X 175 -----DTVRIWKD--YDDDWECVA 191 (330)
T ss_dssp -----SCEEEEEE--ETTEEEEEE
T ss_pred -----CeEEEEEC--CCCCeeEEE
Confidence 35667776 345565543
No 353
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=58.13 E-value=5.4 Score=39.21 Aligned_cols=46 Identities=9% Similarity=0.043 Sum_probs=35.1
Q ss_pred hccccccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchh
Q 048754 185 CNQQYDQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRD 232 (625)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~ 232 (625)
+...+...+.++|.++.++++|++ ++++ ++ ++++|.++..++++..
T Consensus 244 IL~~l~dgIivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~~ 290 (369)
T 3cax_A 244 IFEALPVDVTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPKS 290 (369)
T ss_dssp HHHHSSSEEEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGGG
T ss_pred HHHhCCCcEEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHHHHCChhh
Confidence 334445555566888888899999 9999 66 8999999988877543
No 354
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=57.28 E-value=1.2e+02 Score=28.12 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=50.8
Q ss_pred CEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEE-c--CCEEEEEcCcCCCCceeceEEEEecC
Q 048754 369 SWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII-E--GSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 369 ~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
++.++.|+.++ .+.++|+.++ ....+......... -..+.+ . ++.+++.|+.+ ..+.++|+.
T Consensus 25 g~~lasgs~D~-----~v~lwd~~~~--~~~~~~~l~gH~~~--V~~v~~~~~~~~~~l~s~s~D------~~v~iWd~~ 89 (316)
T 3bg1_A 25 GTRLATCSSDR-----SVKIFDVRNG--GQILIADLRGHEGP--VWQVAWAHPMYGNILASCSYD------RKVIIWREE 89 (316)
T ss_dssp GCEEEEEETTT-----EEEEEEEETT--EEEEEEEEECCSSC--EEEEEECCGGGSSCEEEEETT------SCEEEECCS
T ss_pred CCEEEEEeCCC-----eEEEEEecCC--CcEEEEEEcCCCcc--EEEEEeCCCCCCCEEEEEECC------CEEEEEECC
Confidence 34666666432 5778888766 43222111001111 112233 1 23566666643 257778876
Q ss_pred CCCCceEEcCC-CCCCCCCCcceEEEECC--cEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeE
Q 048754 446 TDKPMWREIPT-SWSPPSRLGHSLSVYGR--TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQ 509 (625)
Q Consensus 446 ~~~~~W~~~~~-~~~p~~r~~~~~~~~~~--~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~ 509 (625)
+.. |..+.. .+...+. .+++...+ +.+++.|+.+ ..+.++|+.. ...|..
T Consensus 90 ~~~--~~~~~~~~~h~~~V--~~v~~~p~~~g~~lasgs~D---------~~i~lwd~~~-~~~~~~ 142 (316)
T 3bg1_A 90 NGT--WEKSHEHAGHDSSV--NSVCWAPHDYGLILACGSSD---------GAISLLTYTG-EGQWEV 142 (316)
T ss_dssp SSC--CCEEEEECCCSSCC--CEEEECCTTTCSCEEEECSS---------SCEEEEEECS-SSCEEE
T ss_pred CCc--ceEEEEccCCCCce--EEEEECCCCCCcEEEEEcCC---------CCEEEEecCC-CCCcce
Confidence 544 433211 0011111 12322222 3567777654 4566777763 224643
No 355
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=57.17 E-value=1.3e+02 Score=28.50 Aligned_cols=104 Identities=17% Similarity=0.152 Sum_probs=51.6
Q ss_pred CEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 369 SWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 369 ~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
+..++.|+.++ .+.++|+.+. +....-.. ..... .+.+...++..++.|+.+ ..+.+||+.+..
T Consensus 210 g~~l~sgs~Dg-----~v~~wd~~~~--~~~~~~~~--h~~~v-~~v~~~p~~~~l~s~s~D------~~v~lwd~~~~~ 273 (354)
T 2pbi_B 210 GNTFVSGGCDK-----KAMVWDMRSG--QCVQAFET--HESDV-NSVRYYPSGDAFASGSDD------ATCRLYDLRADR 273 (354)
T ss_dssp CCEEEEEETTS-----CEEEEETTTC--CEEEEECC--CSSCE-EEEEECTTSSEEEEEETT------SCEEEEETTTTE
T ss_pred CCEEEEEeCCC-----eEEEEECCCC--cEEEEecC--CCCCe-EEEEEeCCCCEEEEEeCC------CeEEEEECCCCc
Confidence 35777777543 5889999887 43322111 11111 122222344566667643 257788875532
Q ss_pred CceEEcCCCCCCCCCCcceEEEE-CCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 449 PMWREIPTSWSPPSRLGHSLSVY-GRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 449 ~~W~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
. -..... .........+.+ .++.+++.|+.+ ..+.+||+.
T Consensus 274 ~-~~~~~~---~~~~~~~~~~~~s~~g~~l~~g~~d---------~~i~vwd~~ 314 (354)
T 2pbi_B 274 E-VAIYSK---ESIIFGASSVDFSLSGRLLFAGYND---------YTINVWDVL 314 (354)
T ss_dssp E-EEEECC---TTCCSCEEEEEECTTSSEEEEEETT---------SCEEEEETT
T ss_pred E-EEEEcC---CCcccceeEEEEeCCCCEEEEEECC---------CcEEEEECC
Confidence 1 111111 111222233333 344666666643 578889986
No 356
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=56.30 E-value=1e+02 Score=26.97 Aligned_cols=152 Identities=11% Similarity=0.048 Sum_probs=74.6
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCC--CCCCCCCccceEEEEc-CCEEEEEcCcCCCCceeceEEEEe
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSG--GAPPLPRSWHSSCIIE-GSKLVVSGGCTDAGVLLSDTYLLD 443 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~--~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d 443 (625)
..+++|+|=| ..+|+++.......-..+.. ...|. .-.++.... ++++|+|-| +.+|+|+
T Consensus 32 ~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~wp~Lp~--~iDAa~~~~~~~~iyfFkG--------~~~w~~~ 94 (207)
T 1pex_A 32 LRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELPN--RIDAAYEHPSHDLIFIFRG--------RKFWALN 94 (207)
T ss_dssp ETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSCS--SCCEEEEETTTTEEEEEET--------TEEEEES
T ss_pred CCCcEEEEEC-------CEEEEEeCCCcCCCceehhHhccCCCC--CccEEEEeccCCcEEEEcc--------CEEEEEe
Confidence 3668999976 24777775443112222221 11232 122333332 568999987 3678886
Q ss_pred cCCCCCce-EEcCCCCCCCCCCc-ceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeee-ccccCcC
Q 048754 444 LTTDKPMW-REIPTSWSPPSRLG-HSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLEC-NAFTGVG 519 (625)
Q Consensus 444 ~~~~~~~W-~~~~~~~~p~~r~~-~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~-~~~~~~~ 519 (625)
-.+-...+ ..|..-+.|..... -++.... ++++|+|-| +..|+||... . .+.. .+....
T Consensus 95 ~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-----------~~ywr~d~~~--~---~~d~gyPr~i~- 157 (207)
T 1pex_A 95 GYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-----------NQVWRYDDTN--H---IMDKDYPRLIE- 157 (207)
T ss_dssp TTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-----------TEEEEEETTT--T---EECSSCCCBHH-
T ss_pred CCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-----------CEEEEEeCcC--c---cccCCCCccHH-
Confidence 32111111 23332223321111 2233333 469999966 6889999762 1 1221 110000
Q ss_pred CCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 520 SQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 520 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
...+-.+..-.+|+.. ++++|.|-|. ..|+||.
T Consensus 158 --~~~~Gip~~iDaAf~~-~g~~YfFkg~--------~y~rf~~ 190 (207)
T 1pex_A 158 --EDFPGIGDKVDAVYEK-NGYIYFFNGP--------IQFEYSI 190 (207)
T ss_dssp --HHSTTSCSCCSEEEEE-TTEEEEEETT--------EEEEEET
T ss_pred --HcCCCCCCCccEEEEc-CCcEEEEECC--------EEEEEeC
Confidence 0000112223455555 8999999764 6888987
No 357
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=55.80 E-value=38 Score=32.26 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=34.0
Q ss_pred CCeeE-EEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccc
Q 048754 53 TPTSF-VVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQ 96 (625)
Q Consensus 53 ~~~~i-~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~ 96 (625)
.+.|+ +++|. +++|+.++.....++|.++++++|++...++
T Consensus 27 QphG~Ll~~~~---~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll 68 (327)
T 4e04_A 27 QPHGLLLALAA---DMTIVAGSDNLPELTGLAIGALIGRSAADVF 68 (327)
T ss_dssp CTTSEEEEECT---TCBEEEEETTHHHHHSCCHHHHTTCBHHHHB
T ss_pred CCCeEEEEEcC---CCeEEEEcccHHHHhCCChHhhcCCCHHHHc
Confidence 34444 44555 8999999999999999999999999988775
No 358
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=54.58 E-value=94 Score=27.69 Aligned_cols=108 Identities=16% Similarity=0.129 Sum_probs=55.9
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCC--CEEE----EcCCC--CCCCC---CccceEEEE-cCCEEEEEcCcCCCCc
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQ--PTWI----EVSGG--APPLP---RSWHSSCII-EGSKLVVSGGCTDAGV 434 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~--~~W~----~~~~~--~~p~~---r~~~~~~~~-~~~~iyv~GG~~~~~~ 434 (625)
.++++|+|-| +..|+||..+++ .... .+... ..|.. ..-.++... .++++|+|-|
T Consensus 69 ~~g~~~fFkg-------~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG------ 135 (225)
T 3oyo_A 69 EASEAYVFSG-------NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG------ 135 (225)
T ss_dssp STTEEEEEET-------TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEET------
T ss_pred CCCeEEEEcC-------CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeC------
Confidence 4678999987 468999764321 0221 12111 11220 011223232 3679999987
Q ss_pred eeceEEEEecCCCCCce--EEcCCCCCCC------CCCcceEEEE-CCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 435 LLSDTYLLDLTTDKPMW--REIPTSWSPP------SRLGHSLSVY-GRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 435 ~~~~~~~~d~~~~~~~W--~~~~~~~~p~------~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
+..|+||....+... ..+.. ..|. +..-.++... .++++|++-| +..|+||..
T Consensus 136 --~~yw~~d~~~~~~~~gPk~I~~-~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG-----------~~ywr~d~~ 197 (225)
T 3oyo_A 136 --NKYVRIAYDSKQLVGNIRNIGD-GFPVLNGTEFESGIDACFASHKEPEAYLFKG-----------QNYVRIDFT 197 (225)
T ss_dssp --TEEEEEETTTTEEEEEEEEHHH-HCGGGTTSTTTTCCSEEEECSSTTEEEEEET-----------TEEEEEECC
T ss_pred --CeEEEEECCCCeecCCCcchhh-cCCCcccccCCCCcCEEEEeCCCCEEEEEEC-----------CEEEEEeCC
Confidence 467889865443211 11111 1111 2222334343 4569999966 688999987
No 359
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=53.96 E-value=1.7e+02 Score=28.70 Aligned_cols=153 Identities=7% Similarity=-0.006 Sum_probs=77.6
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
.++.||+.... .+.+.++|+.++ .-..+... ....+.+..-+++.+|+..... . ..++.++..+
T Consensus 140 ~~g~lyv~d~~-----~~~I~~id~~~g--~~~~~~~~----~~~~~ia~~~~g~~l~~~d~~~-~----~~I~~~d~~~ 203 (409)
T 3hrp_A 140 GNNTVLAYQRD-----DPRVRLISVDDN--KVTTVHPG----FKGGKPAVTKDKQRVYSIGWEG-T----HTVYVYMKAS 203 (409)
T ss_dssp STTEEEEEETT-----TTEEEEEETTTT--EEEEEEET----CCBCBCEECTTSSEEEEEBSST-T----CEEEEEEGGG
T ss_pred CCCCEEEEecC-----CCcEEEEECCCC--EEEEeecc----CCCCceeEecCCCcEEEEecCC-C----ceEEEEEcCC
Confidence 45679998752 246899999877 55444321 1111222222455667654311 1 1789999754
Q ss_pred CCCceEEcCCCCCCCCCCcceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC
Q 048754 447 DKPMWREIPTSWSPPSRLGHSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 447 ~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~ 525 (625)
.. ....+.....+....-+++++.. ++.||+... ...+++||+++ .....+...+. .
T Consensus 204 ~~-~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~----------~~~I~~~d~~~--~~~~~~~~~~~---------~ 261 (409)
T 3hrp_A 204 GW-APTRIGQLGSTFSGKIGAVALDETEEWLYFVDS----------NKNFGRFNVKT--QEVTLIKQLEL---------S 261 (409)
T ss_dssp TT-CEEEEEECCTTSCSCCCBCEECTTSSEEEEECT----------TCEEEEEETTT--CCEEEEEECCC---------C
T ss_pred Cc-eeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC----------CCcEEEEECCC--CCEEEEecccc---------c
Confidence 32 12233100010122224455544 568888422 25789999984 34444432210 0
Q ss_pred CCCccc-e-EEEEec-CCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 526 PPPRLD-H-VAVSMP-CGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 526 p~~r~~-~-~~~~~~-~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
...... . ..+... ++.||+.-.. ...|++|++
T Consensus 262 g~~~~~P~~~ia~~p~~g~lyv~d~~------~~~I~~~~~ 296 (409)
T 3hrp_A 262 GSLGTNPGPYLIYYFVDSNFYMSDQN------LSSVYKITP 296 (409)
T ss_dssp SCCCCSSCCEEEEETTTTEEEEEETT------TTEEEEECT
T ss_pred CCCCCCccccEEEeCCCCEEEEEeCC------CCEEEEEec
Confidence 111111 1 333333 5889987432 458999998
No 360
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=52.98 E-value=1.8e+02 Score=28.79 Aligned_cols=250 Identities=15% Similarity=0.078 Sum_probs=0.0
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEE-----------ccCCCCCcc
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVF-----------GGCGRQGLL 383 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~-----------GG~~~~~~~ 383 (625)
++.+||.-....... +.+.++|+.+ .+.+ ...|....-+-...-+++++|+. ++
T Consensus 84 ~~~vyV~n~~~~~~~--~~VsVID~~t----~~vv--~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~------- 148 (426)
T 3c75_H 84 ARRVYIQDPAHFAAI--TQQFVIDGST----GRIL--GMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRT------- 148 (426)
T ss_dssp TTEEEEEECTTTCSS--EEEEEEETTT----TEEE--EEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEE-------
T ss_pred CCEEEEECCCcCCCC--CeEEEEECCC----CEEE--EEEECCCCCceEECCCCCEEEEEeccccccccCCCC-------
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCC-------CCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPP-------LPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPT 456 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p-------~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~ 456 (625)
+.+.++|+.+. +-..--.. | ...-.+....-+++.+|+ .+....+.+.++|+.+ .+.+..
T Consensus 149 ~~VsviD~~t~--~vv~~I~v--~g~~r~~~g~~P~~~~~spDGk~lyV-----~n~~~~~~VsVID~~t----~kvv~~ 215 (426)
T 3c75_H 149 DYVEVFDPVTF--LPIADIEL--PDAPRFLVGTYQWMNALTPDNKNLLF-----YQFSPAPAVGVVDLEG----KTFDRM 215 (426)
T ss_dssp EEEEEECTTTC--CEEEEEEE--TTCCCCCBSCCGGGSEECTTSSEEEE-----EECSSSCEEEEEETTT----TEEEEE
T ss_pred CEEEEEECCCC--cEEEEEEC--CCccccccCCCcceEEEcCCCCEEEE-----EecCCCCeEEEEECCC----CeEEEE
Q ss_pred CCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEE
Q 048754 457 SWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVS 536 (625)
Q Consensus 457 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~ 536 (625)
.+.+.+ ......++..++.+.+- ..+...+..+....+...... .....+...+..+.
T Consensus 216 --I~v~g~-~~~~p~g~~~~v~~~~d----------G~~~~V~~~~~~v~~~~~~~~---------~v~~~p~~~~~~~~ 273 (426)
T 3c75_H 216 --LDVPDC-YHIFPASPTVFYMNCRD----------GSLARVDFADGETKVTNTEVF---------HTEDELLINHPAFS 273 (426)
T ss_dssp --EECCSE-EEEEEEETTEEEEEETT----------SSEEEEECCTTCCEEEECCCC---------SCTTSCBCSCCEEC
T ss_pred --EEcCCc-eeeccCCCcEEEEEcCC----------CCEEEEECCCCcEEEEeeeee---------ccCCCceeeEeeec
Q ss_pred ecCCEEEEEecCCCCCCCCCcEEEEeCCCCC----CCeEEEcCCCCCCCCCCcc---eEEEECCcEEEEE---cCcCCCC
Q 048754 537 MPCGRIIIFGGSIAGLHSPSQLFLLDPSEEK----PSWRILNVPGQPPKFAWGH---STCVVGGTRVLVL---GGHTGEE 606 (625)
Q Consensus 537 ~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~----~~W~~v~~~~~~p~~r~~~---~~~~~~~~~i~i~---GG~~~~~ 606 (625)
-.++.+++..- .+.++++|....+ ..|............+-.. .++.-.++++|+. ++.....
T Consensus 274 ~dg~~~~~~s~-------~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk 346 (426)
T 3c75_H 274 LRSGRLVWPTY-------TGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHK 346 (426)
T ss_dssp TTTCEEEEEBT-------TSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTT
T ss_pred CCCCEEEEEeC-------CCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccccc
Q ss_pred CccCceEEEEccCCC
Q 048754 607 WVLNELHELCLASKQ 621 (625)
Q Consensus 607 ~~~~d~~~~~~~~~~ 621 (625)
...++|+++|+.+.+
T Consensus 347 ~~s~~VsVID~~T~k 361 (426)
T 3c75_H 347 AASRFVVVLNAETGE 361 (426)
T ss_dssp SCEEEEEEEETTTCC
T ss_pred CCCCEEEEEECCCCe
No 361
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=52.93 E-value=1.7e+02 Score=28.57 Aligned_cols=107 Identities=10% Similarity=-0.011 Sum_probs=49.0
Q ss_pred EEEEccCCCCCccccEEEEECCCCCC-EE--EEcCCCCCCCCCccceEEEEc-CCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 371 LVVFGGCGRQGLLNDVFVLDLDAKQP-TW--IEVSGGAPPLPRSWHSSCIIE-GSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 371 iyv~GG~~~~~~~~~~~~~d~~t~~~-~W--~~~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
+++.|+.++ .+.+||+.+... .+ ....... .....-++.+... ++.+++.|+.+ ..+.+||+.+
T Consensus 196 ~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~d------g~i~i~d~~~ 263 (430)
T 2xyi_A 196 YLLSASDDH-----TICLWDINATPKEHRVIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADD------QKLMIWDTRN 263 (430)
T ss_dssp EEEEECTTS-----CEEEEETTSCCBGGGEEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTC
T ss_pred eEEEEeCCC-----eEEEEeCCCCCCCCceeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCC------CeEEEEECCC
Confidence 666776543 588889876311 11 1111100 1111112222222 44566666532 3688899865
Q ss_pred CC--CceEEcCCCCCCCCCCcceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 447 DK--PMWREIPTSWSPPSRLGHSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 447 ~~--~~W~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
.. ..-..+.. ...+ -.++....++ .+++.|+.+ ..+.+||+..
T Consensus 264 ~~~~~~~~~~~~--~~~~--v~~i~~~p~~~~~l~tg~~d---------g~v~vwd~~~ 309 (430)
T 2xyi_A 264 NNTSKPSHTVDA--HTAE--VNCLSFNPYSEFILATGSAD---------KTVALWDLRN 309 (430)
T ss_dssp SCSSSCSEEEEC--CSSC--EEEEEECSSCTTEEEEEETT---------SEEEEEETTC
T ss_pred CCCCcceeEeec--CCCC--eEEEEeCCCCCCEEEEEeCC---------CeEEEEeCCC
Confidence 42 01111111 1111 1122222222 477777753 5688899873
No 362
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=50.97 E-value=1e+02 Score=27.47 Aligned_cols=113 Identities=13% Similarity=0.060 Sum_probs=57.0
Q ss_pred cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEc------CC--CCCCCC----CCcceEEEE-CCcEEEEEcCCcCC
Q 048754 419 EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREI------PT--SWSPPS----RLGHSLSVY-GRTKVLMFGGLAKS 485 (625)
Q Consensus 419 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~------~~--~~~p~~----r~~~~~~~~-~~~~l~v~GG~~~~ 485 (625)
.++++|+|-| +..|+||..+.+..-..+ .. +++|.. .. -++... .++++|+|-|
T Consensus 69 ~~g~~~fFkg--------~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~I-DAA~~~~~~gk~yfFkG---- 135 (225)
T 3oyo_A 69 EASEAYVFSG--------NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSI-DSAFRSTKGKEVYLFKG---- 135 (225)
T ss_dssp STTEEEEEET--------TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCC-CEEEECSSTTEEEEEET----
T ss_pred CCCeEEEEcC--------CEEEEEecccccCCCceecCchhhhhcCCCCCCccccccc-ceEEEECCCCcEEEEeC----
Confidence 4679999987 367888764432212111 11 112220 11 122222 3569999976
Q ss_pred CCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCC-CCCCCccceEEEEe-cCCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 486 GHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSA-VVPPPRLDHVAVSM-PCGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 486 ~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~-~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
+..|+||... .+...= +.++. ...|.. ....+..-.+|+.. .++++|.|-|. ..|+||.
T Consensus 136 -------~~yw~~d~~~--~~~~~g-Pk~I~-~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~--------~ywr~d~ 196 (225)
T 3oyo_A 136 -------NKYVRIAYDS--KQLVGN-IRNIG-DGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ--------NYVRIDF 196 (225)
T ss_dssp -------TEEEEEETTT--TEEEEE-EEEHH-HHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT--------EEEEEEC
T ss_pred -------CeEEEEECCC--CeecCC-Ccchh-hcCCCcccccCCCCcCEEEEeCCCCEEEEEECC--------EEEEEeC
Confidence 6889999763 222210 11000 000000 00113333455554 47899999764 7889997
No 363
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=50.61 E-value=1.2e+02 Score=26.15 Aligned_cols=149 Identities=13% Similarity=0.108 Sum_probs=73.1
Q ss_pred CCEEEEEccCCCCCccccEEEEECCC--CCCEEEEcCC--CCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEE
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDA--KQPTWIEVSG--GAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLL 442 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t--~~~~W~~~~~--~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~ 442 (625)
++++|+|=| +..|+++... ....-..+.. ...|.. -.++... .++++|+|-| +..|+|
T Consensus 16 ~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~--IDAa~~~~~~~~~yfFkG--------~~yw~~ 78 (195)
T 1itv_A 16 GNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPRK--LDSVFEEPLSKKLFFFSG--------RQVWVY 78 (195)
T ss_dssp TTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS--CSEEEECTTTCCEEEEET--------TEEEEE
T ss_pred CCEEEEEEC-------CEEEEEECCccccCCCcEEhhhccCCCCCC--ccEEEEECCCCeEEEEeC--------CEEEEE
Confidence 668999977 3578887644 1111122321 112322 1233233 2567999987 356777
Q ss_pred ecCCCCCceEEcCCCCCCCC--CCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeee-ccccCcC
Q 048754 443 DLTTDKPMWREIPTSWSPPS--RLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLEC-NAFTGVG 519 (625)
Q Consensus 443 d~~~~~~~W~~~~~~~~p~~--r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~-~~~~~~~ 519 (625)
+..+... -..+..-+.|.. ... ++....++++|+|-| +..|.||.... .+.. .|....
T Consensus 79 ~~~~~~~-Pk~i~~~G~p~~~~~iD-AA~~~~~g~~yfFkg-----------~~ywr~d~~~~-----~~~~gyPr~i~- 139 (195)
T 1itv_A 79 TGASVLG-PRRLDKLGLGADVAQVT-GALRSGRGKMLLFSG-----------RRLWRFDVKAQ-----MVDPRSASEVD- 139 (195)
T ss_dssp ETTEEEE-EEEGGGGTCCTTCCCCC-EEEECSTTEEEEEET-----------TEEEEEETTTT-----EECGGGCEEHH-
T ss_pred cCCccCC-CEEeeecccCCCcccee-EEEEcCCCeEEEEeC-----------CEEEEEeCCcc-----cccCCCccChh-
Confidence 7321100 111221123331 222 222334569999966 67899997631 1211 000000
Q ss_pred CCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 520 SQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 520 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
...+-.|..-.+++.. ++.+|.+-|. ..|+||.
T Consensus 140 --~~w~Gvp~~idaa~~~-~g~~Yffkg~--------~y~~~~~ 172 (195)
T 1itv_A 140 --RMFPGVPLDTHDVFQF-REKAYFCQDR--------FYWRVSS 172 (195)
T ss_dssp --HHSTTSCSSCSEEEEE-TTEEEEEETT--------EEEEEEC
T ss_pred --hcCCCCCCCCCEEEEe-CCeEEEEeCC--------EEEEEEC
Confidence 0001112233466666 6899999774 6788887
No 364
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=49.33 E-value=1.6e+02 Score=26.99 Aligned_cols=112 Identities=6% Similarity=-0.021 Sum_probs=52.0
Q ss_pred eEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecC-CEEEEE
Q 048754 467 SLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPC-GRIIIF 545 (625)
Q Consensus 467 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~-~~l~v~ 545 (625)
+.++..++.+|+......... .....+++||+. +.++..+.... ..........+....+ ++|||.
T Consensus 22 ~~~~~~~g~l~~~~~~~~~~~--~~~~~i~~~d~~--~g~~~~~~~~~---------~~~~~~~~~~i~~~~~~g~l~v~ 88 (314)
T 1pjx_A 22 GPVFDKNGDFYIVAPEVEVNG--KPAGEILRIDLK--TGKKTVICKPE---------VNGYGGIPAGCQCDRDANQLFVA 88 (314)
T ss_dssp EEEECTTSCEEEEETTCEETT--EECCEEEEECTT--TCCEEEEECCE---------ETTEECCEEEEEECSSSSEEEEE
T ss_pred CceECCCCCEEEEEeccccCC--CCCCEEEEEeCC--CCcEEEEEecc---------cCCCCCCCceEEEecCCCcEEEE
Confidence 444444557888721000000 012578899877 34555443210 0000011223333335 788887
Q ss_pred ecCCCCCCCCCcEEEEeCCCCCCCeEEE-cCCCCCCCCCCcceEEEECCcEEEEEcC
Q 048754 546 GGSIAGLHSPSQLFLLDPSEEKPSWRIL-NVPGQPPKFAWGHSTCVVGGTRVLVLGG 601 (625)
Q Consensus 546 GG~~~~~~~~~~v~~~d~~~~~~~W~~v-~~~~~~p~~r~~~~~~~~~~~~i~i~GG 601 (625)
... ..+++||+ + .+...+ ...........-+.+++..++.+|+...
T Consensus 89 ~~~-------~~l~~~d~--~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 135 (314)
T 1pjx_A 89 DMR-------LGLLVVQT--D-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAP 135 (314)
T ss_dssp ETT-------TEEEEEET--T-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEEC
T ss_pred ECC-------CCEEEEeC--C-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEec
Confidence 542 26999998 4 555554 3211111111223444555667777553
No 365
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=48.91 E-value=1.7e+02 Score=27.13 Aligned_cols=223 Identities=12% Similarity=0.038 Sum_probs=106.1
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.||+.--. .+.++++|... ...... ..+ ..-+.++...++++|+....... ..++.||..++
T Consensus 42 ~g~lyv~d~~------~~~I~~~d~~g---~~~~~~--~~~--~~p~gia~~~dG~l~vad~~~~~---~~v~~~d~~~g 105 (306)
T 2p4o_A 42 DGTIFVTNHE------VGEIVSITPDG---NQQIHA--TVE--GKVSGLAFTSNGDLVATGWNADS---IPVVSLVKSDG 105 (306)
T ss_dssp TSCEEEEETT------TTEEEEECTTC---CEEEEE--ECS--SEEEEEEECTTSCEEEEEECTTS---CEEEEEECTTS
T ss_pred CCCEEEEeCC------CCeEEEECCCC---ceEEEE--eCC--CCceeEEEcCCCcEEEEeccCCc---ceEEEEcCCCC
Confidence 4568877532 12388888765 232221 111 11233343344568887532111 24788888777
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCC-ceEEcCC--CCCCCC--CCcceEE
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKP-MWREIPT--SWSPPS--RLGHSLS 469 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~-~W~~~~~--~~~p~~--r~~~~~~ 469 (625)
+...+... +..+.....+...++.+|+.-- ....+|++|+.+... .|..-.. ...+.. ......
T Consensus 106 --~~~~~~~~--~~~~~~~g~~~~~~~~~~v~d~------~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 106 --TVETLLTL--PDAIFLNGITPLSDTQYLTADS------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp --CEEEEEEC--TTCSCEEEEEESSSSEEEEEET------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred --eEEEEEeC--CCccccCcccccCCCcEEEEEC------CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 55554432 3344444444455666777532 124789999754311 1211000 001111 111223
Q ss_pred EECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCce---eEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEe
Q 048754 470 VYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQW---KQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFG 546 (625)
Q Consensus 470 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W---~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G 546 (625)
..+++.||+.--. ...+++|+++.+ .+. ..+... ..| ..++.-.+++|||.-
T Consensus 175 s~dg~~lyv~d~~---------~~~I~~~~~~~~-g~~~~~~~~~~~------------~~P---~gi~vd~dG~l~va~ 229 (306)
T 2p4o_A 175 KRFGNFLYVSNTE---------KMLLLRIPVDST-DKPGEPEIFVEQ------------TNI---DDFAFDVEGNLYGAT 229 (306)
T ss_dssp EEETTEEEEEETT---------TTEEEEEEBCTT-SCBCCCEEEEES------------CCC---SSEEEBTTCCEEEEC
T ss_pred CcCCCEEEEEeCC---------CCEEEEEEeCCC-CCCCccEEEecc------------CCC---CCeEECCCCCEEEEe
Confidence 3334478886322 378999998731 111 111111 111 223333467888874
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEEC----C-cEEEEEcC
Q 048754 547 GSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVG----G-TRVLVLGG 601 (625)
Q Consensus 547 G~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~----~-~~i~i~GG 601 (625)
.. .+.|.+||+ + .+...+.. .+.+.....++.+. + +.|||.-.
T Consensus 230 ~~------~~~V~~~~~--~-G~~~~~~~---~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 230 HI------YNSVVRIAP--D-RSTTIIAQ---AEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp BT------TCCEEEECT--T-CCEEEEEC---GGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CC------CCeEEEECC--C-CCEEEEee---cccccCCceEEEEecccCCCCEEEEECC
Confidence 32 467999998 2 44433321 11111223444442 3 68888654
No 366
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=47.99 E-value=1.7e+02 Score=27.00 Aligned_cols=145 Identities=13% Similarity=0.212 Sum_probs=73.8
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
++.||+... ...++.||+. ++..|...... + . ..+.+...++.+|+. .. ...++.||+. .
T Consensus 107 ~~~l~v~t~------~~~l~~~d~~-g~~~~~~~~~~--~--~-~~~~~~~~~g~l~vg-t~------~~~l~~~d~~-g 166 (330)
T 3hxj_A 107 EDILYVTSM------DGHLYAINTD-GTEKWRFKTKK--A--I-YATPIVSEDGTIYVG-SN------DNYLYAINPD-G 166 (330)
T ss_dssp TTEEEEECT------TSEEEEECTT-SCEEEEEECSS--C--C-CSCCEECTTSCEEEE-CT------TSEEEEECTT-S
T ss_pred CCEEEEEec------CCEEEEEcCC-CCEEEEEcCCC--c--e-eeeeEEcCCCEEEEE-cC------CCEEEEECCC-C
Confidence 667777532 1358999988 55578754322 1 1 122333335567763 21 1368889987 5
Q ss_pred CCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCC
Q 048754 448 KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPP 527 (625)
Q Consensus 448 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~ 527 (625)
...|..-.. .. ...+.+...++.+|+.. ..++.||.+ ....|......
T Consensus 167 ~~~~~~~~~----~~-~~~~~~~d~~g~l~v~t------------~~l~~~d~~-g~~~~~~~~~~-------------- 214 (330)
T 3hxj_A 167 TEKWRFKTN----DA-ITSAASIGKDGTIYFGS------------DKVYAINPD-GTEKWNFYAGY-------------- 214 (330)
T ss_dssp CEEEEEECS----SC-CCSCCEECTTCCEEEES------------SSEEEECTT-SCEEEEECCSS--------------
T ss_pred CEeEEEecC----CC-ceeeeEEcCCCEEEEEe------------CEEEEECCC-CcEEEEEccCC--------------
Confidence 556765422 11 11233343455777653 357788833 33456543211
Q ss_pred CccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEE
Q 048754 528 PRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRIL 573 (625)
Q Consensus 528 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v 573 (625)
.. ..+.+...++.||+... ...+++||.+ ....|...
T Consensus 215 ~~-~~~~~~~~~g~l~v~t~-------~~gl~~~~~~-g~~~~~~~ 251 (330)
T 3hxj_A 215 WT-VTRPAISEDGTIYVTSL-------DGHLYAINPD-GTEKWRFK 251 (330)
T ss_dssp CC-CSCCEECTTSCEEEEET-------TTEEEEECTT-SCEEEEEE
T ss_pred cc-eeceEECCCCeEEEEcC-------CCeEEEECCC-CCEeEEee
Confidence 11 12223333557777421 2468888863 34446543
No 367
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=47.80 E-value=1.6e+02 Score=26.83 Aligned_cols=100 Identities=7% Similarity=-0.010 Sum_probs=51.6
Q ss_pred ceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEE
Q 048754 466 HSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIII 544 (625)
Q Consensus 466 ~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v 544 (625)
.+.+...++ .||+.+.. ...+++||+.+ . ...+... .. ...+.....++++|+
T Consensus 31 eg~~~d~~g~~l~~~~~~---------~~~i~~~~~~~--~-~~~~~~~-------------~~-~~~~l~~~~dg~l~v 84 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDVR---------QNRTWAWSDDG--Q-LSPEMHP-------------SH-HQNGHCLNKQGHLIA 84 (296)
T ss_dssp EEEEEEGGGTEEEEEEGG---------GTEEEEEETTS--C-EEEEESS-------------CS-SEEEEEECTTCCEEE
T ss_pred cCCeEeCCCCEEEEEeCC---------CCEEEEEECCC--C-eEEEECC-------------CC-CcceeeECCCCcEEE
Confidence 345454444 47777654 26789999883 3 4433211 11 112333334677877
Q ss_pred EecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEE
Q 048754 545 FGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVL 599 (625)
Q Consensus 545 ~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~ 599 (625)
.... ...|++||+ .+.+...+...........-..+++..++.+|+.
T Consensus 85 ~~~~------~~~i~~~d~--~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vt 131 (296)
T 3e5z_A 85 CSHG------LRRLERQRE--PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFS 131 (296)
T ss_dssp EETT------TTEEEEECS--TTCCEEEEECEETTEECCCCCCEEECTTSCEEEE
T ss_pred EecC------CCeEEEEcC--CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEE
Confidence 6432 357999998 4666665532111111111223445556677775
No 368
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=47.13 E-value=6.5 Score=37.80 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=38.7
Q ss_pred ccccCchhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHhhh
Q 048754 211 GILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMV 256 (625)
Q Consensus 211 ~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (625)
.+..+|+|++ ..++..++..++..+..+|++|+.+..+...|+..
T Consensus 8 ~~~~LP~eil-~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l 52 (336)
T 2ast_B 8 SWDSLPDELL-LGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (336)
T ss_dssp CSSSSCHHHH-HHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred ChhhCCHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence 4567899999 89999999999999999999999999877666543
No 369
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=46.97 E-value=2.3e+02 Score=28.27 Aligned_cols=150 Identities=12% Similarity=0.024 Sum_probs=71.8
Q ss_pred eEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceE--EcccC--CCCCCccceeEEEE-cCCEEEEEccCCCCCcccc
Q 048754 311 ACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWR--RVSVK--SSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLND 385 (625)
Q Consensus 311 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~--~~~~~--~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~ 385 (625)
.+.+.+++|+|-|. ..|+++... ..+. .|... ..|. .. -++... .++++|+|-| +.
T Consensus 268 i~~~~ge~y~Fkg~--------~~wr~~~~~--~~~~p~~I~~~Wp~LP~-~i-DAa~~~~~~g~~~fFKg-------~~ 328 (450)
T 1su3_A 268 ITTIRGEVMFFKDR--------FYMRTNPFY--PEVELNFISVFWPQLPN-GL-EAAYEFADRDEVRFFKG-------NK 328 (450)
T ss_dssp EEEETTEEEEEETT--------EEEECCTTS--SSCEEEEGGGTCTTSCS-SC-CEEEEEGGGTEEEEEET-------TE
T ss_pred EEecCCeEEEEeCC--------EEEEEcCCC--CcccceehhHhccCCCC-Ce-eEEEEEcCCCeEEEEeC-------CE
Confidence 44578999999884 145554332 1221 12110 1121 12 222222 2568999977 35
Q ss_pred EEEEECCCCCC-EEEEcC-CCCCCC-CCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCc---eEEcCC--
Q 048754 386 VFVLDLDAKQP-TWIEVS-GGAPPL-PRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPM---WREIPT-- 456 (625)
Q Consensus 386 ~~~~d~~t~~~-~W~~~~-~~~~p~-~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~---W~~~~~-- 456 (625)
.|+|+..+-.. --..+. ....|. +..--++... .++++|+|-| +..|+||..+.+.. =..+..
T Consensus 329 ~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG--------~~yw~yd~~~~~~~~gYPk~I~~~f 400 (450)
T 1su3_A 329 YWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA--------NKYWRYDEYKRSMDPGYPKMIAHDF 400 (450)
T ss_dssp EEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCSEEHHHHS
T ss_pred EEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC--------CEEEEEeCCCccccCCCCcchhhcC
Confidence 78887432100 011222 001121 1112233334 3579999977 47899986432100 011210
Q ss_pred CCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 457 SWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 457 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
++.|.. -.++.. .++++|+|-| +..|+||..
T Consensus 401 pgip~~--iDAA~~-~~g~~YFFkg-----------~~ywr~d~~ 431 (450)
T 1su3_A 401 PGIGHK--VDAVFM-KDGFFYFFHG-----------TRQYKFDPK 431 (450)
T ss_dssp TTSCSC--CSEEEE-ETTEEEEEET-----------TEEEEEETT
T ss_pred CCCCCC--ccEEEE-cCCeEEEEeC-----------CEEEEEECC
Confidence 112221 123333 4559999966 688999977
No 370
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=45.17 E-value=1.8e+02 Score=26.61 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=32.8
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEE-c--CCEEEEEcCcCCCCceeceEEEEec
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII-E--GSKLVVSGGCTDAGVLLSDTYLLDL 444 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~~d~ 444 (625)
++..++.|+.+ ..+.+||..+....+..+.... .....-.++.+ . ++.+++.|+.+ ..+.+||+
T Consensus 22 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~d~~~l~s~~~d------g~v~vwd~ 88 (351)
T 3f3f_A 22 YGRHVATCSSD-----QHIKVFKLDKDTSNWELSDSWR--AHDSSIVAIDWASPEYGRIIASASYD------KTVKLWEE 88 (351)
T ss_dssp SSSEEEEEETT-----SEEEEEEECSSSCCEEEEEEEE--CCSSCEEEEEECCGGGCSEEEEEETT------SCEEEEEE
T ss_pred CCCEEEEeeCC-----CeEEEEECCCCCCcceecceec--cCCCcEEEEEEcCCCCCCEEEEEcCC------CeEEEEec
Confidence 34466666643 2577888776533454432110 01111122333 2 24567767643 25777787
Q ss_pred CCC
Q 048754 445 TTD 447 (625)
Q Consensus 445 ~~~ 447 (625)
.+.
T Consensus 89 ~~~ 91 (351)
T 3f3f_A 89 DPD 91 (351)
T ss_dssp CTT
T ss_pred CCC
Confidence 553
No 371
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=44.39 E-value=2.2e+02 Score=27.61 Aligned_cols=66 Identities=8% Similarity=0.107 Sum_probs=34.4
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+. .+.++|+.+.. .-..+. ..+....-.+++...++..++.|+.++ .+.+||+.+.
T Consensus 181 ~~~~l~~~~~d~------~i~iwd~~~~~-~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~ 246 (437)
T 3gre_A 181 EKSLLVALTNLS------RVIIFDIRTLE-RLQIIE--NSPRHGAVSSICIDEECCVLILGTTRG-----IIDIWDIRFN 246 (437)
T ss_dssp SCEEEEEEETTS------EEEEEETTTCC-EEEEEE--CCGGGCCEEEEEECTTSCEEEEEETTS-----CEEEEETTTT
T ss_pred CCCEEEEEeCCC------eEEEEeCCCCe-eeEEEc--cCCCCCceEEEEECCCCCEEEEEcCCC-----eEEEEEcCCc
Confidence 356677776533 38899987632 112221 111111112222223455677777543 5889999876
No 372
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=44.03 E-value=1.7e+02 Score=25.83 Aligned_cols=153 Identities=13% Similarity=0.144 Sum_probs=73.6
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCE-EEEcCCC--CCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEE
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPT-WIEVSGG--APPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLL 442 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~-W~~~~~~--~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~ 442 (625)
..+++|+|-| +..|+++....... -..+... ..|. .. -++... .++++|+|-| +..|+|
T Consensus 39 ~~g~~~fFkg-------~~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~I-DAA~~~~~~~k~yfFkG--------~~yW~y 101 (218)
T 1gen_A 39 IRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPE-KI-DAVYEAPQEEKAVFFAG--------NEYWIY 101 (218)
T ss_dssp ETTEEEEEET-------TEEEEESSTTSCCEEEEEGGGTCTTSCS-CC-SEEEEETTTTEEEEEET--------TEEEEE
T ss_pred CCCcEEEEEC-------CEEEEEeCCCCccCCCEEHHHhcCCCCC-Cc-cEEEEECCCCEEEEEeC--------CEEEEE
Confidence 3668999977 24677665432111 1233321 1132 22 233333 3568999977 467888
Q ss_pred ecCCCCCce-EEcCCCCCCCC-CCcceEEEE-CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeec-cccCc
Q 048754 443 DLTTDKPMW-REIPTSWSPPS-RLGHSLSVY-GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECN-AFTGV 518 (625)
Q Consensus 443 d~~~~~~~W-~~~~~~~~p~~-r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~-~~~~~ 518 (625)
+-.+-...+ ..|..-+.|.. ..-.++... .++++|+|-| +..|+||.... .+... +....
T Consensus 102 ~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG-----------~~ywr~d~~~~-----~v~~gyPr~i~ 165 (218)
T 1gen_A 102 SASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-----------DKFWRYNEVKK-----KMDPGFPKLIA 165 (218)
T ss_dssp ETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-----------TEEEEEETTTT-----EECSSCCEEHH
T ss_pred cCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC-----------CEEEEEECccc-----cccCCCCcchh
Confidence 831100001 11221122321 112233332 4569999966 68899997632 11110 00000
Q ss_pred CCCCCCCCCCccceEEEEec-CCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 519 GSQSAVVPPPRLDHVAVSMP-CGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 519 ~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
...+..+..-.+|+... ++++|.|-|. ..|+||.
T Consensus 166 ---~~w~g~p~~idaAf~~~~~g~~YfFkg~--------~y~~~~~ 200 (218)
T 1gen_A 166 ---DAWNAIPDNLDAVVDLQGGGHSYFFKGA--------YYLKLEN 200 (218)
T ss_dssp ---HHSSSCCSSCSEEEECTTTCEEEEEETT--------EEEEEET
T ss_pred ---hccCCCCCCCCEEEEEcCCCcEEEEECC--------EEEEEEC
Confidence 00011122334666653 4899999664 6788887
No 373
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=43.62 E-value=2e+02 Score=26.61 Aligned_cols=145 Identities=10% Similarity=0.100 Sum_probs=66.3
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++..++.|+.+. .+.++|+.+. .....+. + ..... .++....++.+++.|+.++ .+.++|+...
T Consensus 76 dg~~l~s~s~D~------~v~~wd~~~~-~~~~~~~--~-h~~~v-~~~~~~~~~~~l~s~s~D~-----~i~vwd~~~~ 139 (319)
T 3frx_A 76 DGAYALSASWDK------TLRLWDVATG-ETYQRFV--G-HKSDV-MSVDIDKKASMIISGSRDK-----TIKVWTIKGQ 139 (319)
T ss_dssp TSSEEEEEETTS------EEEEEETTTT-EEEEEEE--C-CSSCE-EEEEECTTSCEEEEEETTS-----CEEEEETTSC
T ss_pred CCCEEEEEeCCC------EEEEEECCCC-CeeEEEc--c-CCCcE-EEEEEcCCCCEEEEEeCCC-----eEEEEECCCC
Confidence 445566666432 3788898763 1222221 1 11111 1222223445677777543 4777887654
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEc------CCEEEEEcCcCCCCceeceEEEEecCCCCCceEE-cCCCCCCCCCCcce
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIE------GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWRE-IPTSWSPPSRLGHS 467 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~-~~~~~~p~~r~~~~ 467 (625)
.-..+.... ... .+..... +...++.||.+ ..+.++|+.+.. -.. +.. ...+ -.+
T Consensus 140 --~~~~~~~h~---~~v-~~~~~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~--~~~~~~~--h~~~--v~~ 201 (319)
T 3frx_A 140 --CLATLLGHN---DWV-SQVRVVPNEKADDDSVTIISAGND------KMVKAWNLNQFQ--IEADFIG--HNSN--INT 201 (319)
T ss_dssp --EEEEECCCS---SCE-EEEEECCC------CCEEEEEETT------SCEEEEETTTTE--EEEEECC--CCSC--EEE
T ss_pred --eEEEEeccC---CcE-EEEEEccCCCCCCCccEEEEEeCC------CEEEEEECCcch--hheeecC--CCCc--EEE
Confidence 433333210 101 1111111 22345555532 257778875432 111 111 1111 123
Q ss_pred EEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 468 LSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 468 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
++...++++++.||.+ ..+.++|+.+
T Consensus 202 ~~~sp~g~~l~s~~~d---------g~i~iwd~~~ 227 (319)
T 3frx_A 202 LTASPDGTLIASAGKD---------GEIMLWNLAA 227 (319)
T ss_dssp EEECTTSSEEEEEETT---------CEEEEEETTT
T ss_pred EEEcCCCCEEEEEeCC---------CeEEEEECCC
Confidence 3333455777777753 5788899873
No 374
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=43.12 E-value=2.5e+02 Score=27.52 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=35.3
Q ss_pred cceEEEEecCCEEEEEec--CCCCC----CCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEc
Q 048754 530 LDHVAVSMPCGRIIIFGG--SIAGL----HSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLG 600 (625)
Q Consensus 530 ~~~~~~~~~~~~l~v~GG--~~~~~----~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~G 600 (625)
..|+++...++.||.+|- ...+. .......-..+. .......|. .-..|++++..++.+|.+|
T Consensus 136 ~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~-~~~~i~~va-------~G~~hs~alt~~G~v~~wG 204 (423)
T 3mvd_K 136 DSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLM-EGTVCCSIA-------SGADHLVILTTAGKVFTVG 204 (423)
T ss_dssp SSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESS-TTCCEEEEE-------ECSSEEEEEETTSCEEEEE
T ss_pred cCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEec-CCCcEEEEe-------cCCCeEEEEecCCeEEEee
Confidence 467888887899999984 11110 000100001110 223444443 2246888888888999999
No 375
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=42.28 E-value=3.1e+02 Score=28.30 Aligned_cols=159 Identities=15% Similarity=0.107 Sum_probs=0.0
Q ss_pred EEEEEcCcCCCCceeceEEEEecCC---CCCceEEcC--CCCCCCCCCcceEEEECCc--EEEEEcCCcCCCCcccccCc
Q 048754 422 KLVVSGGCTDAGVLLSDTYLLDLTT---DKPMWREIP--TSWSPPSRLGHSLSVYGRT--KVLMFGGLAKSGHLRLRSGE 494 (625)
Q Consensus 422 ~iyv~GG~~~~~~~~~~~~~~d~~~---~~~~W~~~~--~~~~p~~r~~~~~~~~~~~--~l~v~GG~~~~~~~~~~~~~ 494 (625)
+.+++||+..++ ..+|.+|+.. ....|+.-. ...+.........+.+.++ .+++-+|++..... ..
T Consensus 152 rtvLvggmg~GG---~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~----~~ 224 (570)
T 3hx6_A 152 HTVLIGSLRAGG---KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDK----AA 224 (570)
T ss_dssp EEEEEEECTTSC---SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCC----EE
T ss_pred eEEEEEecCCCC---cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCc----cE
Q ss_pred eEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEE--EEecCCCCCCCCCcEEEEeCCCCCC----
Q 048754 495 SYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRII--IFGGSIAGLHSPSQLFLLDPSEEKP---- 568 (625)
Q Consensus 495 ~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~--v~GG~~~~~~~~~~v~~~d~~~~~~---- 568 (625)
++++|+++....|+.-.... ...+......+++-..++.+. ++.|- ....||+||+...+.
T Consensus 225 Lyv~d~~tG~li~~i~~~~~--------~~~~~Gls~~~~~D~d~Dg~~D~~YaGD-----l~GnlWRfDl~~~~~~~~~ 291 (570)
T 3hx6_A 225 LLIIDMETGAITRKLEVTGR--------TGVPNGLSSPRLADNNSDGVADYAYAGD-----LQGNLWRFDLIAGKVNQDD 291 (570)
T ss_dssp EEEEETTTCCEEEEEEECCS--------TTSCCCEEEEEEECTTSSSBCCEEEEEE-----TTSEEEEEECSCSSCCTTS
T ss_pred EEEEECCCCceEEEEecCCC--------CccCCccccceEEecCCCCceeEEEEEe-----CCCcEEEEEcCCCCccccc
Q ss_pred -------------CeE---------EEcCCCCCCCCCCcceEEEEC---CcEEEEEc
Q 048754 569 -------------SWR---------ILNVPGQPPKFAWGHSTCVVG---GTRVLVLG 600 (625)
Q Consensus 569 -------------~W~---------~v~~~~~~p~~r~~~~~~~~~---~~~i~i~G 600 (625)
.|. .....+..+++.....++... .+.+|+||
T Consensus 292 ~~~~~~~~~~~~s~w~v~~~~~plf~a~d~~g~~QPITaaP~v~~~~~~~g~~V~FG 348 (570)
T 3hx6_A 292 PFSRANDGPAVASSFRVSFGGQPLYSAVDSAGAAQAITAAPSLVRHPTRKGYIVIFG 348 (570)
T ss_dssp TTCCTTCSGGGGGGCEESGGGCCSEECBCTTSCBCCCCSCCEEEECTTSSSEEEEEE
T ss_pred ccccccccccccccceeccCCcceEEEecCCCCCCCEEcCceEEEcCCCCcEEEEEe
No 376
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=41.95 E-value=2.6e+02 Score=27.34 Aligned_cols=250 Identities=12% Similarity=0.040 Sum_probs=116.3
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEE-EcCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSS-LNGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.||+....+ +.++++|+.+ ..-..+... .. ..+ .+. -.++.+|+...... ..+++++..+
T Consensus 141 ~g~lyv~d~~~------~~I~~id~~~--g~~~~~~~~-~~---~~~-ia~~~~g~~l~~~d~~~~----~~I~~~d~~~ 203 (409)
T 3hrp_A 141 NNTVLAYQRDD------PRVRLISVDD--NKVTTVHPG-FK---GGK-PAVTKDKQRVYSIGWEGT----HTVYVYMKAS 203 (409)
T ss_dssp TTEEEEEETTT------TEEEEEETTT--TEEEEEEET-CC---BCB-CEECTTSSEEEEEBSSTT----CEEEEEEGGG
T ss_pred CCCEEEEecCC------CcEEEEECCC--CEEEEeecc-CC---CCc-eeEecCCCcEEEEecCCC----ceEEEEEcCC
Confidence 56788887531 2388999876 344443212 11 122 222 23456776654221 1689999876
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEEc-CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCC-CCCCCCCCc-c-eEE
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCIIE-GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPT-SWSPPSRLG-H-SLS 469 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~-~~~p~~r~~-~-~~~ 469 (625)
.. ....+.....+....-+..+... ++.+|+... . ..+++||+++.. ...+.. ......... . .++
T Consensus 204 ~~-~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~---~----~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia 273 (409)
T 3hrp_A 204 GW-APTRIGQLGSTFSGKIGAVALDETEEWLYFVDS---N----KNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLI 273 (409)
T ss_dssp TT-CEEEEEECCTTSCSCCCBCEECTTSSEEEEECT---T----CEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEE
T ss_pred Cc-eeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC---C----CcEEEEECCCCC--EEEEecccccCCCCCCccccEE
Confidence 52 12233110000112223344443 568888322 1 368999987654 333310 001111122 1 455
Q ss_pred EEC-CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCc--cceEEEEecCCEEEEEe
Q 048754 470 VYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPR--LDHVAVSMPCGRIIIFG 546 (625)
Q Consensus 470 ~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r--~~~~~~~~~~~~l~v~G 546 (625)
+.. ++.||+.... ...+++++++. . ...+.... .......+.....+ .....+.-.+++||+.-
T Consensus 274 ~~p~~g~lyv~d~~---------~~~I~~~~~~g--~-~~~~~g~~-~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad 340 (409)
T 3hrp_A 274 YYFVDSNFYMSDQN---------LSSVYKITPDG--E-CEWFCGSA-TQKTVQDGLREEALFAQPNGMTVDEDGNFYIVD 340 (409)
T ss_dssp EETTTTEEEEEETT---------TTEEEEECTTC--C-EEEEEECT-TCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEE
T ss_pred EeCCCCEEEEEeCC---------CCEEEEEecCC--C-EEEEEeCC-CCCCcCCCcccccEeCCCeEEEEeCCCCEEEEe
Confidence 554 4689987432 36788898763 2 23332210 00000000000011 12233333466799884
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCeEEEcCCC--------CCCCCCC--cceEEEECCcEEEEEcCcCCCCCccCceEEEE
Q 048754 547 GSIAGLHSPSQLFLLDPSEEKPSWRILNVPG--------QPPKFAW--GHSTCVVGGTRVLVLGGHTGEEWVLNELHELC 616 (625)
Q Consensus 547 G~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~--------~~p~~r~--~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~ 616 (625)
.. ....|.++++ .+.....+...+ .....++ -++.++..++.|||....+ +.|.++.
T Consensus 341 ~~-----~~~~I~~~~~--~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n------~~Ir~i~ 407 (409)
T 3hrp_A 341 GF-----KGYCLRKLDI--LDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG------KAIRKYA 407 (409)
T ss_dssp TT-----TTCEEEEEET--TTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT------CEEEEEE
T ss_pred CC-----CCCEEEEEEC--CCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC------CeEEEEE
Confidence 31 1457899996 345554443211 0011111 2334444557888865322 3455655
Q ss_pred c
Q 048754 617 L 617 (625)
Q Consensus 617 ~ 617 (625)
+
T Consensus 408 ~ 408 (409)
T 3hrp_A 408 V 408 (409)
T ss_dssp E
T ss_pred e
Confidence 4
No 377
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=41.55 E-value=2.6e+02 Score=27.30 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=35.8
Q ss_pred cceEEEEecCCEEEEEecCCCCCC----CCCcEEEEe-CCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcC
Q 048754 530 LDHVAVSMPCGRIIIFGGSIAGLH----SPSQLFLLD-PSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGG 601 (625)
Q Consensus 530 ~~~~~~~~~~~~l~v~GG~~~~~~----~~~~v~~~d-~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG 601 (625)
..|+++...++.||.+|-...+.. ...+...-. +. .-..+..|. .-..|++++..++.+|.+|-
T Consensus 295 ~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~-~l~~v~~v~-------~G~~hs~alt~~G~v~~wG~ 363 (413)
T 1a12_A 295 QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS-RLPAVSSVA-------CGASVGYAVTKDGRVFAWGM 363 (413)
T ss_dssp SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECC-SSSSEEEEE-------ECSSEEEEEETTSCEEEEEC
T ss_pred cceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEec-ccCceeEEE-------ECcceEEEEeCCCCEEEecC
Confidence 467888887899999985332111 111111110 10 111344443 22358888888889999984
No 378
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=40.55 E-value=2.7e+02 Score=27.23 Aligned_cols=65 Identities=9% Similarity=-0.049 Sum_probs=36.0
Q ss_pred cceEEEEecCCEEEEEecCCCCC----CCCCcEEEEe-CCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcC
Q 048754 530 LDHVAVSMPCGRIIIFGGSIAGL----HSPSQLFLLD-PSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGG 601 (625)
Q Consensus 530 ~~~~~~~~~~~~l~v~GG~~~~~----~~~~~v~~~d-~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG 601 (625)
..|+++...++.||.+|-...+. ...+.+.... +..-......|. .-..|++++..++.+|.+|-
T Consensus 303 ~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia-------~G~~hs~alt~~G~v~~wG~ 372 (423)
T 3mvd_K 303 QHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVG-------CGEVCSYAVTIDGKLYSWGS 372 (423)
T ss_dssp SSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEE-------EETTEEEEEETTSCEEEEEC
T ss_pred cCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEE-------cCCCeEEEEcCCCCEEEECC
Confidence 46788888789999998533211 1111121111 100111333443 22368888888889999994
No 379
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=40.05 E-value=2.1e+02 Score=25.83 Aligned_cols=146 Identities=14% Similarity=0.113 Sum_probs=67.5
Q ss_pred CEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 369 SWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 369 ~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
+..++.|+.++ .+.+||.... -..+.. +....-.+.+...++. ++.|+.+ ..+.+||+.+..
T Consensus 155 ~~~l~~~~~d~-----~i~i~d~~~~---~~~~~~---~~~~~i~~~~~~~~~~-~~~~~~d------g~i~i~d~~~~~ 216 (313)
T 3odt_A 155 ENKFLTASADK-----TIKLWQNDKV---IKTFSG---IHNDVVRHLAVVDDGH-FISCSND------GLIKLVDMHTGD 216 (313)
T ss_dssp TTEEEEEETTS-----CEEEEETTEE---EEEECS---SCSSCEEEEEEEETTE-EEEEETT------SEEEEEETTTCC
T ss_pred CCEEEEEECCC-----CEEEEecCce---EEEEec---cCcccEEEEEEcCCCe-EEEccCC------CeEEEEECCchh
Confidence 34556665432 5788884322 223322 1111222333444556 5556532 368889976544
Q ss_pred CceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCC
Q 048754 449 PMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPP 528 (625)
Q Consensus 449 ~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~ 528 (625)
... .+.. ...+ -.+++...++. ++.|+.+ ..+.+||+.+. +....-.. +..
T Consensus 217 ~~~-~~~~--~~~~--i~~~~~~~~~~-l~~~~~d---------g~v~iwd~~~~--~~~~~~~~------------~~~ 267 (313)
T 3odt_A 217 VLR-TYEG--HESF--VYCIKLLPNGD-IVSCGED---------RTVRIWSKENG--SLKQVITL------------PAI 267 (313)
T ss_dssp EEE-EEEC--CSSC--EEEEEECTTSC-EEEEETT---------SEEEEECTTTC--CEEEEEEC------------SSS
T ss_pred hhh-hhhc--CCce--EEEEEEecCCC-EEEEecC---------CEEEEEECCCC--ceeEEEec------------cCc
Confidence 222 2211 1111 12333334443 5555542 67888998742 22222111 111
Q ss_pred ccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeE
Q 048754 529 RLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWR 571 (625)
Q Consensus 529 r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~ 571 (625)
.-.++....+++ ++.|+. ...+.+||+ .+..+.
T Consensus 268 -~i~~~~~~~~~~-~~~~~~------dg~i~iw~~--~~~~~~ 300 (313)
T 3odt_A 268 -SIWSVDCMSNGD-IIVGSS------DNLVRIFSQ--EKSRWA 300 (313)
T ss_dssp -CEEEEEECTTSC-EEEEET------TSCEEEEES--CGGGCC
T ss_pred -eEEEEEEccCCC-EEEEeC------CCcEEEEeC--CCCcee
Confidence 112233333556 455664 447889998 455543
No 380
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=37.75 E-value=2.3e+02 Score=25.65 Aligned_cols=53 Identities=8% Similarity=0.194 Sum_probs=28.4
Q ss_pred eEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 334 TFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 334 ~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
+.++|+.+ .+..++-....+. ..-.+++...+++.++.|+.++ .+.++|..++
T Consensus 47 V~iWd~~t--g~~~~~~~~~~~~-~~V~~v~~~~~~~~l~sgs~Dg-----~v~iw~~~~~ 99 (318)
T 4ggc_A 47 VYLWSASS--GDILQLLQMEQPG-EYISSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQ 99 (318)
T ss_dssp EEEEETTT--CCEEEEEECCSTT-CCEEEEEECTTSSEEEEEETTS-----EEEEEETTTT
T ss_pred EEEEECCC--CCEEEEEEecCCC-CeEEEEEECCCCCEEEEEECCC-----cEEEeecCCc
Confidence 88889877 3443321111111 1112233334455777777543 5888999887
No 381
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=37.43 E-value=2e+02 Score=24.80 Aligned_cols=150 Identities=11% Similarity=0.102 Sum_probs=72.0
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCC-CCEEEEcCC--CCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEec
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAK-QPTWIEVSG--GAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDL 444 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~-~~~W~~~~~--~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~ 444 (625)
.+++|+|-| +.+|+++...- ...-..+.. ...|. .. -++....++++|+|-| +..|+|+-
T Consensus 15 ~g~~~fFkg-------~~~w~~~~~~~~~gyP~~I~~~w~glP~-~i-DAa~~~~~g~~yfFkg--------~~yw~~~~ 77 (196)
T 3c7x_A 15 RGEMFVFKE-------RWFWRVRNNQVMDGYPMPIGQFWRGLPA-SI-NTAYERKDGKFVFFKG--------DKHWVFDE 77 (196)
T ss_dssp TTEEEEEET-------TEEEEEETTEECTTCSEEHHHHSTTCCS-SC-CEEEECTTSCEEEEET--------TEEEEEET
T ss_pred CCEEEEEEC-------CEEEEEECCccCCCCceEhhHhccCCCC-Cc-cEEEEeCCCcEEEecC--------CEEEEEeC
Confidence 568999987 35777753210 000122221 01233 22 2333334567899877 36788873
Q ss_pred CCCCCc-eEEcCCC--CCCCCCCcceEEEE-CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeee-ccccCcC
Q 048754 445 TTDKPM-WREIPTS--WSPPSRLGHSLSVY-GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLEC-NAFTGVG 519 (625)
Q Consensus 445 ~~~~~~-W~~~~~~--~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~-~~~~~~~ 519 (625)
.+.... =..+... +.|..... ++... .++++|++-| +..|+||..+. .+.. .+.....
T Consensus 78 ~~~~~gyPk~I~~~~~glP~~~ID-AA~~~~~~g~~yfFkG-----------~~yw~yd~~~~-----~v~~gyPk~i~~ 140 (196)
T 3c7x_A 78 ASLEPGYPKHIKELGRGLPTDKID-AALFWMPNGKTYFFRG-----------NKYYRFNEELR-----AVDSEYPKNIKV 140 (196)
T ss_dssp TEECTTCSEEGGGTCBSCCSSCCS-EEEEETTTTEEEEEET-----------TEEEEEETTTT-----EECTTCSEEGGG
T ss_pred CcccCCCCeEhhhcCCCCCCCccc-EEEEEccCCEEEEEEC-----------CEEEEEeCCcc-----cccCCCCccHHH
Confidence 211100 1122221 13322222 23333 3569999966 67899997631 1211 0100000
Q ss_pred CCCCCCCCCccceEEEEecCC-EEEEEecCCCCCCCCCcEEEEeC
Q 048754 520 SQSAVVPPPRLDHVAVSMPCG-RIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 520 ~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
.+..|..-.+++...++ ++|.+-|. ..|+||.
T Consensus 141 ----~~gip~~idaAf~~~~~~~~YfFkg~--------~y~r~d~ 173 (196)
T 3c7x_A 141 ----WEGIPESPRGSFMGSDEVFTYFYKGN--------KYWKFNN 173 (196)
T ss_dssp ----SBTCCSSCSEEEECTTSSEEEEEETT--------EEEEEET
T ss_pred ----CCCcCCCcceeEEecCCCEEEEEECC--------EEEEEEC
Confidence 00112223456655454 89999664 6789997
No 382
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=34.02 E-value=2.2e+02 Score=29.85 Aligned_cols=108 Identities=12% Similarity=0.128 Sum_probs=53.2
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCE-EEEcCCCCCCC--CCccceEEEE-cCCEEEEEcCcCCCCceeceEEEE
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPT-WIEVSGGAPPL--PRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLL 442 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~-W~~~~~~~~p~--~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~ 442 (625)
.++++|+|-| +..|+|+..+-... -..+.....|. .+. .++... .++++|+|-| +..|.|
T Consensus 499 ~~~k~yFFkG-------~~yWry~~~~l~~GYPk~Is~~G~P~~~~~I-DAAf~~~~~gktYFFkG--------~~ywry 562 (631)
T 1ck7_A 499 QEEKAVFFAG-------NEYWIYSASTLERGYPKPLTSLGLPPDVQRV-DAAFNWSKNKKTYIFAG--------DKFWRY 562 (631)
T ss_dssp TTTEEEEEET-------TEEEEEETTEECTTCCEEGGGGTCCTTCCCC-CBCCCCTTTCEEEEEET--------TEEEEE
T ss_pred CCCEEEEEec-------CEEEEECCCccccCCCccchhcCCCCCCCcc-eeEEEecCCCeEEEEEC--------CEEEEE
Confidence 3568999977 36889985321101 12333211121 122 222222 4568999977 478999
Q ss_pred ecCCCCCc---eEEcCCCCCCCCCCcceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 443 DLTTDKPM---WREIPTSWSPPSRLGHSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 443 d~~~~~~~---W~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
|..+.... =..+....+..+..-.++.... ++++|++-| +..|+||..
T Consensus 563 d~~~~~vd~gYPk~i~~~w~G~p~~iDAAf~~~~~g~~YFFkG-----------~~Ywr~d~~ 614 (631)
T 1ck7_A 563 NEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKG-----------AYYLKLENQ 614 (631)
T ss_dssp ETTTTEECTTCCEETTTSCSSCCTTCCEEECCTTSCBCEEEET-----------TEEECCBTT
T ss_pred cCCcccccCCCCcchHhhcCCCCCCCcEeEEEcCCCeEEEEEC-----------CEEEEEeCc
Confidence 96442100 0122211122222223333333 358888866 566777765
No 383
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=33.72 E-value=3.7e+02 Score=26.83 Aligned_cols=75 Identities=20% Similarity=0.121 Sum_probs=38.7
Q ss_pred CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC-C-CCccceEEEEecCCEEEEEecCCC
Q 048754 473 RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV-P-PPRLDHVAVSMPCGRIIIFGGSIA 550 (625)
Q Consensus 473 ~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~-p-~~r~~~~~~~~~~~~l~v~GG~~~ 550 (625)
.++||+-|.. ++.++++|..++..+=+.+.... |.... + -....|...+..++ |||..-.+.
T Consensus 95 r~~l~v~~l~---------s~~I~viD~~t~p~~p~~~k~ie------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~ 158 (462)
T 2ece_A 95 RRFLIVPGLR---------SSRIYIIDTKPNPREPKIIKVIE------PEEVKKVSGYSRLHTVHCGPDA-IYISALGNE 158 (462)
T ss_dssp SCEEEEEBTT---------TCCEEEEECCSCTTSCEEEEEEC------HHHHHHHHCEEEEEEEEECSSC-EEEEEEEET
T ss_pred CCEEEEccCC---------CCeEEEEECCCCCCCceeeeeec------hhhcccccCCCcccceeECCCe-EEEEcCCCc
Confidence 4477777665 48899999874322222222210 00000 0 01134555666566 776432222
Q ss_pred CCCCCCcEEEEeC
Q 048754 551 GLHSPSQLFLLDP 563 (625)
Q Consensus 551 ~~~~~~~v~~~d~ 563 (625)
.+...+.+.++|.
T Consensus 159 ~g~~~g~v~vlD~ 171 (462)
T 2ece_A 159 EGEGPGGILMLDH 171 (462)
T ss_dssp TSCSCCEEEEECT
T ss_pred CCCCCCeEEEEEC
Confidence 3334688999998
No 384
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=33.60 E-value=3.4e+02 Score=26.39 Aligned_cols=66 Identities=9% Similarity=0.150 Sum_probs=34.7
Q ss_pred ccceEEEEcCCEEEEEcCcCCCCc---eeceEEEEe----cCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCC
Q 048754 411 SWHSSCIIEGSKLVVSGGCTDAGV---LLSDTYLLD----LTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGL 482 (625)
Q Consensus 411 ~~~~~~~~~~~~iyv~GG~~~~~~---~~~~~~~~d----~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~ 482 (625)
..|+++...++.+|.+|--..... ...+...-. +......+..+. .-..|++++..++.+|.+|-.
T Consensus 241 ~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia------~G~~hs~al~~~G~v~~wG~n 313 (413)
T 1a12_A 241 AYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFS------GGQHHTVCMDSEGKAYSLGRA 313 (413)
T ss_dssp TTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEE------ECSSEEEEEETTSCEEEEECC
T ss_pred CCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEe------cccceEEEEeCCCCEEEeeCC
Confidence 357777777889999985321110 001111100 011011243333 234588888888899999854
No 385
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=33.12 E-value=5.6e+02 Score=28.67 Aligned_cols=72 Identities=10% Similarity=0.161 Sum_probs=39.6
Q ss_pred EecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC----CCCccCc
Q 048754 536 SMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG----EEWVLNE 611 (625)
Q Consensus 536 ~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~----~~~~~~d 611 (625)
...+++.++++.. ..+++++|+ .+.+-..+.... .. ...+....++++.+++++.+. .......
T Consensus 386 ~SpDG~~la~~~~------~~~v~~~d~--~tg~~~~~~~~~---~~-~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~ 453 (1045)
T 1k32_A 386 VDRNGKFAVVAND------RFEIMTVDL--ETGKPTVIERSR---EA-MITDFTISDNSRFIAYGFPLKHGETDGYVMQA 453 (1045)
T ss_dssp ECTTSSEEEEEET------TSEEEEEET--TTCCEEEEEECS---SS-CCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred ECCCCCEEEEECC------CCeEEEEEC--CCCceEEeccCC---CC-CccceEECCCCCeEEEEecCccccccCCCCCe
Confidence 3346666666653 248999999 565655553211 11 123444556667677766543 0112357
Q ss_pred eEEEEccC
Q 048754 612 LHELCLAS 619 (625)
Q Consensus 612 ~~~~~~~~ 619 (625)
++++++.+
T Consensus 454 i~l~d~~~ 461 (1045)
T 1k32_A 454 IHVYDMEG 461 (1045)
T ss_dssp EEEEETTT
T ss_pred EEEEECCC
Confidence 77777754
No 386
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=33.00 E-value=3.3e+02 Score=26.02 Aligned_cols=106 Identities=11% Similarity=0.039 Sum_probs=50.3
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+. .+.++|+.+ .+-...- .+ ... .-.+++...++..++.|+.+ ..+.++|+.++
T Consensus 134 dg~~l~s~~~d~------~i~iwd~~~--~~~~~~~-~~-h~~-~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~~~~ 197 (393)
T 1erj_A 134 DGKFLATGAEDR------LIRIWDIEN--RKIVMIL-QG-HEQ-DIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRTG 197 (393)
T ss_dssp TSSEEEEEETTS------CEEEEETTT--TEEEEEE-CC-CSS-CEEEEEECTTSSEEEEEETT-----SEEEEEETTTT
T ss_pred CCCEEEEEcCCC------eEEEEECCC--CcEEEEE-cc-CCC-CEEEEEEcCCCCEEEEecCC-----CcEEEEECCCC
Confidence 345566666432 388889876 2322211 11 111 11222222333455666643 35888999887
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEc-CCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIE-GSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
........ .. .-.+.+... ++.+++.|+.+ ..+.+||+.+..
T Consensus 198 --~~~~~~~~--~~--~v~~~~~~~~~~~~l~~~s~d------~~v~iwd~~~~~ 240 (393)
T 1erj_A 198 --QCSLTLSI--ED--GVTTVAVSPGDGKYIAAGSLD------RAVRVWDSETGF 240 (393)
T ss_dssp --EEEEEEEC--SS--CEEEEEECSTTCCEEEEEETT------SCEEEEETTTCC
T ss_pred --eeEEEEEc--CC--CcEEEEEECCCCCEEEEEcCC------CcEEEEECCCCc
Confidence 43322111 10 111222222 44667767643 357788876543
No 387
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=32.95 E-value=3.3e+02 Score=26.01 Aligned_cols=102 Identities=16% Similarity=0.071 Sum_probs=50.7
Q ss_pred cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEE-cCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEE
Q 048754 419 EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWRE-IPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYT 497 (625)
Q Consensus 419 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~-~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~ 497 (625)
.+++.++.|+.+ ..+.++|+.+.. -.. +.. ...+ -.++....++..++.|+.+ ..+.+
T Consensus 133 ~dg~~l~s~~~d------~~i~iwd~~~~~--~~~~~~~--h~~~--v~~~~~~p~~~~l~s~s~d---------~~v~i 191 (393)
T 1erj_A 133 PDGKFLATGAED------RLIRIWDIENRK--IVMILQG--HEQD--IYSLDYFPSGDKLVSGSGD---------RTVRI 191 (393)
T ss_dssp TTSSEEEEEETT------SCEEEEETTTTE--EEEEECC--CSSC--EEEEEECTTSSEEEEEETT---------SEEEE
T ss_pred CCCCEEEEEcCC------CeEEEEECCCCc--EEEEEcc--CCCC--EEEEEEcCCCCEEEEecCC---------CcEEE
Confidence 344666666643 367888976543 222 111 1111 1233333344556666653 56788
Q ss_pred EEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEec-CCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 498 IDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMP-CGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 498 ~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
+|+.+ .+....... . . ...++.... ++++++.|+.+ ..+.+||+
T Consensus 192 wd~~~--~~~~~~~~~------------~-~-~v~~~~~~~~~~~~l~~~s~d------~~v~iwd~ 236 (393)
T 1erj_A 192 WDLRT--GQCSLTLSI------------E-D-GVTTVAVSPGDGKYIAAGSLD------RAVRVWDS 236 (393)
T ss_dssp EETTT--TEEEEEEEC------------S-S-CEEEEEECSTTCCEEEEEETT------SCEEEEET
T ss_pred EECCC--CeeEEEEEc------------C-C-CcEEEEEECCCCCEEEEEcCC------CcEEEEEC
Confidence 89873 232221111 0 1 112222222 56788887753 46788888
No 388
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=31.95 E-value=3e+02 Score=25.17 Aligned_cols=158 Identities=9% Similarity=-0.054 Sum_probs=73.7
Q ss_pred cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEE
Q 048754 419 EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTI 498 (625)
Q Consensus 419 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~ 498 (625)
+++.+|+.+-. .+.++.|+++ .. .+.+.. + ....++.+.-.+++||+.... ...++++
T Consensus 55 ~g~~l~~~d~~------~~~i~~~~~~-g~--~~~~~~---~-~~~~~gl~~d~dG~l~v~~~~---------~~~v~~~ 112 (305)
T 3dr2_A 55 AQRTLVWSDLV------GRRVLGWRED-GT--VDVLLD---A-TAFTNGNAVDAQQRLVHCEHG---------RRAITRS 112 (305)
T ss_dssp GGTEEEEEETT------TTEEEEEETT-SC--EEEEEE---S-CSCEEEEEECTTSCEEEEETT---------TTEEEEE
T ss_pred CCCEEEEEECC------CCEEEEEeCC-CC--EEEEeC---C-CCccceeeECCCCCEEEEECC---------CCEEEEE
Confidence 34457776532 1467888873 32 333321 1 111234444445577776321 1467888
Q ss_pred EcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEE----ecCCC-------CCCCCCcEEEEeCCCCC
Q 048754 499 DLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIF----GGSIA-------GLHSPSQLFLLDPSEEK 567 (625)
Q Consensus 499 d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~----GG~~~-------~~~~~~~v~~~d~~~~~ 567 (625)
+++ . +.+.+.... ...+. ......+...++++|+. |-... .......|++||+ .+
T Consensus 113 ~~~-g--~~~~~~~~~--------~~~~~-~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~--~~ 178 (305)
T 3dr2_A 113 DAD-G--QAHLLVGRY--------AGKRL-NSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP--DG 178 (305)
T ss_dssp CTT-S--CEEEEECEE--------TTEEC-SCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS--SS
T ss_pred CCC-C--CEEEEEecc--------CCCcc-CCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC--CC
Confidence 875 2 344443220 00011 11123344447788885 33210 0011357999998 56
Q ss_pred CCeEEEcCCCCCCCCCCcceEEEECCc-EEEEEcCcCCCCCccCceEEEEccC
Q 048754 568 PSWRILNVPGQPPKFAWGHSTCVVGGT-RVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 568 ~~W~~v~~~~~~p~~r~~~~~~~~~~~-~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
.++..+. .... -.+.+...++ .||+....... ...+.|++|++..
T Consensus 179 g~~~~~~-~~~~-----p~gl~~spdg~~lyv~~~~~~~-~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 179 SPLQRMA-DLDH-----PNGLAFSPDEQTLYVSQTPEQG-HGSVEITAFAWRD 224 (305)
T ss_dssp CCCEEEE-EESS-----EEEEEECTTSSEEEEEECCC----CCCEEEEEEEET
T ss_pred CcEEEEe-cCCC-----CcceEEcCCCCEEEEEecCCcC-CCCCEEEEEEecC
Confidence 6776663 1111 1334444454 46665432110 0125677777653
No 389
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=31.64 E-value=2.7e+02 Score=24.54 Aligned_cols=106 Identities=16% Similarity=0.201 Sum_probs=52.5
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCC--CCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEec
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGG--APPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDL 444 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~--~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~ 444 (625)
.++++|+|-|. ..|+++.......-..+... ..|.. -.++... ++++|+|-| +.+|+|+.
T Consensus 27 ~~g~~yfFkg~-------~~Wr~~~~~~~~~p~~Is~~wpgLP~~--IDAA~~~-~~~~yfFkG--------~~yw~~~~ 88 (219)
T 1hxn_A 27 NHGATYVFSGS-------HYWRLDTNRDGWHSWPIAHQWPQGPST--VDAAFSW-EDKLYLIQD--------TKVYVFLT 88 (219)
T ss_dssp TTSCEEEEETT-------EEEESSSSSCTTCCEEGGGTCTTSCSS--CSEEEEE-TTEEEEEET--------TEEEEEEC
T ss_pred CCCcEEEEeCC-------EEEEEcCCCCCCCceEhhhhccCCCCC--ccEEEEE-CCcEEEecC--------CEEEEEeC
Confidence 35679999772 46666643221111233321 12322 2234444 679999977 46888985
Q ss_pred CCCC---Cce-EEcCC-CCCCCC--CCcceEEE-E-CCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 445 TTDK---PMW-REIPT-SWSPPS--RLGHSLSV-Y-GRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 445 ~~~~---~~W-~~~~~-~~~p~~--r~~~~~~~-~-~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
.+.. ..+ ..+.. -+.|.. ...--+++ . .++++|+|-| +..|+||..
T Consensus 89 ~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG-----------~~ywr~d~~ 143 (219)
T 1hxn_A 89 KGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-----------RRLWWLDLK 143 (219)
T ss_dssp SSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-----------TEEEEEEGG
T ss_pred CCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC-----------CEEEEEeCC
Confidence 3210 000 11110 112322 11122333 2 3468999976 678999976
No 390
>4fj6_A Glycoside hydrolase family 33, candidate sialidas; bacterial neuraminidase repeat; HET: MSE GOL; 1.90A {Parabacteroides distasonis}
Probab=30.88 E-value=4.4e+02 Score=26.83 Aligned_cols=142 Identities=6% Similarity=0.012 Sum_probs=63.1
Q ss_pred EEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCc
Q 048754 439 TYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGV 518 (625)
Q Consensus 439 ~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~ 518 (625)
...|.- ....+|+.... .+......+++...+++|++.--.... ....++...+...+|+......
T Consensus 354 ~i~~S~-D~G~TW~~~~~--~~~~~~e~~vve~~dG~L~~~~R~~~~-------g~r~v~~S~D~G~TWt~~~~~~---- 419 (523)
T 4fj6_A 354 GIMYSK-DRGKTWHLHNL--ARTNTTEAQVAEVEPGVLMLNMRDNRG-------GSRAVATTKDLGKTWTEHPSSR---- 419 (523)
T ss_dssp EEEEES-STTSSCEECCC--SEETEEEEEEEEEETTEEEEEEEETTC-------SBCEEEEESSTTSSCEECTTTT----
T ss_pred EEEEEC-CCCCeEEECCC--CCccccCCEEEEecCCEEEEEEEecCC-------CcEEEEEECCCCCccCcCcCcc----
Confidence 334442 23356987653 222222334444556688884221111 1123443333467999864220
Q ss_pred CCCCCCCCCCccceEEEEec------CCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEc-CCCCCCCCCCcceEEEE
Q 048754 519 GSQSAVVPPPRLDHVAVSMP------CGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILN-VPGQPPKFAWGHSTCVV 591 (625)
Q Consensus 519 ~~~~~~~p~~r~~~~~~~~~------~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~-~~~~~p~~r~~~~~~~~ 591 (625)
...|.|....+++.+. +..++++..-.......+-...+..+ +-.+|.... ..-..+..-.+.+++.+
T Consensus 420 ----~~L~~P~c~~Sii~~~~~~~~~g~~~lL~snp~~~~~R~~l~v~~S~D-~G~TW~~~~~v~~~~~~~~~Ys~l~~~ 494 (523)
T 4fj6_A 420 ----SALQESVCMASLIKVNAKDNITGKDLLLFSNPNTTKGRNHITIKASLD-GGLTWPTEHQVLLDEAEGWGYSCLSMI 494 (523)
T ss_dssp ----TSSBCSSCCCEEEEECGGGSTTCSCEEEEEEECCSSSSCCEEEEEESS-TTSCCCGGGEEEEECSCCCCCEEEEEC
T ss_pred ----ccCCCCCcccEEEEEecccCCCCCcEEEEEccCCCCccccceEEEeCC-CCCCCccCceEEEcCCCCcccceEEEc
Confidence 1123444445555542 23566666543222222222233332 456897532 00011112234445556
Q ss_pred CCcEEEEE
Q 048754 592 GGTRVLVL 599 (625)
Q Consensus 592 ~~~~i~i~ 599 (625)
.++.|.|+
T Consensus 495 ~dG~i~il 502 (523)
T 4fj6_A 495 DKETVGIF 502 (523)
T ss_dssp SSSEEEEE
T ss_pred CCCEEEEE
Confidence 67777665
No 391
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=30.72 E-value=3.5e+02 Score=25.59 Aligned_cols=198 Identities=10% Similarity=-0.021 Sum_probs=89.7
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
+++.+.+.+|... ..+.++|+.+. +....... ... . .+.+.-.++++++.|+. +.+.+++..+
T Consensus 144 Dg~~la~as~~~d----~~i~iwd~~~~--~~~~~~~~--~~~-V-~~v~fspdg~~l~s~s~-------~~~~~~~~~~ 206 (365)
T 4h5i_A 144 EGTVAAIASSKVP----AIMRIIDPSDL--TEKFEIET--RGE-V-KDLHFSTDGKVVAYITG-------SSLEVISTVT 206 (365)
T ss_dssp TSSCEEEEESCSS----CEEEEEETTTT--EEEEEEEC--SSC-C-CEEEECTTSSEEEEECS-------SCEEEEETTT
T ss_pred CCCEEEEEECCCC----CEEEEeECCCC--cEEEEeCC--CCc-e-EEEEEccCCceEEeccc-------eeEEEEEecc
Confidence 3444555555321 35888999887 43322111 111 1 12333344456665541 2456666544
Q ss_pred CCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCC
Q 048754 447 DKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVP 526 (625)
Q Consensus 447 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p 526 (625)
....-..... .. ...-.++....++..++.++.+.... ..++.++.. ........... ..
T Consensus 207 ~~~~~~~~~~--~~-~~~v~~v~fspdg~~l~~~s~d~~~~-----~~i~~~~~~--~~~~~~~~~~~----------~~ 266 (365)
T 4h5i_A 207 GSCIARKTDF--DK-NWSLSKINFIADDTVLIAASLKKGKG-----IVLTKISIK--SGNTSVLRSKQ----------VT 266 (365)
T ss_dssp CCEEEEECCC--CT-TEEEEEEEEEETTEEEEEEEESSSCC-----EEEEEEEEE--TTEEEEEEEEE----------EE
T ss_pred CcceeeeecC--CC-CCCEEEEEEcCCCCEEEEEecCCcce-----eEEeecccc--cceecceeeee----------ec
Confidence 4311111111 11 11111222334557777766543221 245666665 22332222110 01
Q ss_pred CCccceEEE-EecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCC--cceEEEECCcEEEEEcCcC
Q 048754 527 PPRLDHVAV-SMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAW--GHSTCVVGGTRVLVLGGHT 603 (625)
Q Consensus 527 ~~r~~~~~~-~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~--~~~~~~~~~~~i~i~GG~~ 603 (625)
.....-.++ ...++++++.|+.+ ..|.+||+ .+. +.+.. ...+.. -.+++..+++++++-|+.+
T Consensus 267 ~~~~~V~~~~~Spdg~~lasgs~D------~~V~iwd~--~~~--~~~~~---~~~gH~~~V~~v~fSpdg~~laS~S~D 333 (365)
T 4h5i_A 267 NRFKGITSMDVDMKGELAVLASND------NSIALVKL--KDL--SMSKI---FKQAHSFAITEVTISPDSTYVASVSAA 333 (365)
T ss_dssp SSCSCEEEEEECTTSCEEEEEETT------SCEEEEET--TTT--EEEEE---ETTSSSSCEEEEEECTTSCEEEEEETT
T ss_pred CCCCCeEeEEECCCCCceEEEcCC------CEEEEEEC--CCC--cEEEE---ecCcccCCEEEEEECCCCCEEEEEeCC
Confidence 111112233 33477888888753 46889998 333 23321 011111 1234445677888888755
Q ss_pred CCCCccCceEEEEccCC
Q 048754 604 GEEWVLNELHELCLASK 620 (625)
Q Consensus 604 ~~~~~~~d~~~~~~~~~ 620 (625)
+ .|.++++.++
T Consensus 334 ~------tvrvw~ip~~ 344 (365)
T 4h5i_A 334 N------TIHIIKLPLN 344 (365)
T ss_dssp S------EEEEEECCTT
T ss_pred C------eEEEEEcCCC
Confidence 4 3556666543
No 392
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=29.98 E-value=3.4e+02 Score=25.19 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=37.0
Q ss_pred cEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCC
Q 048754 474 TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLH 553 (625)
Q Consensus 474 ~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 553 (625)
+.+|+++.. ...+++||+++ .....+. . +. ...+.....++++++...
T Consensus 61 ~~l~~~d~~---------~~~i~~~d~~~--~~~~~~~-~------------~~--~v~~i~~~~dg~l~v~~~------ 108 (326)
T 2ghs_A 61 GTAWWFNIL---------ERELHELHLAS--GRKTVHA-L------------PF--MGSALAKISDSKQLIASD------ 108 (326)
T ss_dssp TEEEEEEGG---------GTEEEEEETTT--TEEEEEE-C------------SS--CEEEEEEEETTEEEEEET------
T ss_pred CEEEEEECC---------CCEEEEEECCC--CcEEEEE-C------------CC--cceEEEEeCCCeEEEEEC------
Confidence 477777543 26789999873 3333322 1 11 112233334778877531
Q ss_pred CCCcEEEEeCCCCCCCeEEEc
Q 048754 554 SPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 554 ~~~~v~~~d~~~~~~~W~~v~ 574 (625)
..+++||+ .+.+...+.
T Consensus 109 --~gl~~~d~--~~g~~~~~~ 125 (326)
T 2ghs_A 109 --DGLFLRDT--ATGVLTLHA 125 (326)
T ss_dssp --TEEEEEET--TTCCEEEEE
T ss_pred --CCEEEEEC--CCCcEEEEe
Confidence 25999998 566776654
No 393
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=29.74 E-value=3.4e+02 Score=25.06 Aligned_cols=214 Identities=9% Similarity=-0.082 Sum_probs=97.3
Q ss_pred eEEEEc-CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCC-CCCCccceEEEEc-CCEEEEEcCcCCC------
Q 048754 362 TLSSLN-GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAP-PLPRSWHSSCIIE-GSKLVVSGGCTDA------ 432 (625)
Q Consensus 362 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~-p~~r~~~~~~~~~-~~~iyv~GG~~~~------ 432 (625)
+++... ++.|||.... ..+.+||+.++ ..+.+..... .....-+..+... ++.+|+.-.....
T Consensus 84 gi~~~~~~g~l~v~d~~------~~i~~~d~~~g--~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~ 155 (322)
T 2fp8_A 84 DISYNLQNNQLYIVDCY------YHLSVVGSEGG--HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ 155 (322)
T ss_dssp EEEEETTTTEEEEEETT------TEEEEECTTCE--ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred eEEEcCCCCcEEEEECC------CCEEEEeCCCC--EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccc
Confidence 344342 5789988432 23788988766 4444322100 0111112233333 4578886321100
Q ss_pred -----CceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCC-C
Q 048754 433 -----GVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEE-P 505 (625)
Q Consensus 433 -----~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~-~ 505 (625)
......+++||+++.. ...+... ...+ ...++-.++ .||+.-.. ...+++|++.... .
T Consensus 156 ~~~~~~~~~g~v~~~d~~~~~--~~~~~~~-~~~p---~gia~~~dg~~lyv~d~~---------~~~I~~~~~~~~~~~ 220 (322)
T 2fp8_A 156 QIMDTSDKTGRLIKYDPSTKE--TTLLLKE-LHVP---GGAEVSADSSFVLVAEFL---------SHQIVKYWLEGPKKG 220 (322)
T ss_dssp HHHHHTCCCEEEEEEETTTTE--EEEEEEE-ESCC---CEEEECTTSSEEEEEEGG---------GTEEEEEESSSTTTT
T ss_pred eehcccCCCceEEEEeCCCCE--EEEeccC-CccC---cceEECCCCCEEEEEeCC---------CCeEEEEECCCCcCC
Confidence 0122568999976543 4332211 1111 334444343 58876322 2688999987321 1
Q ss_pred ceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCC----CCCCcEEEEeCCCCCCCeEEEcCCCCCCC
Q 048754 506 QWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGL----HSPSQLFLLDPSEEKPSWRILNVPGQPPK 581 (625)
Q Consensus 506 ~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~----~~~~~v~~~d~~~~~~~W~~v~~~~~~p~ 581 (625)
..+.+... +. ...++.-.+++|||.-...... .....+++||+ +...-..+......+
T Consensus 221 ~~~~~~~~------------~g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~--~G~~~~~~~~~~g~~- 282 (322)
T 2fp8_A 221 TAEVLVKI------------PN---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE--FGNILEVIPLPPPFA- 282 (322)
T ss_dssp CEEEEEEC------------SS---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT--TSCEEEEEECCTTTT-
T ss_pred ccceEEeC------------CC---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC--CCCEEEEEECCCCCc-
Confidence 33333222 11 1233334467888875421000 01346889998 333333343221111
Q ss_pred CCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCCCCC
Q 048754 582 FAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQDS 623 (625)
Q Consensus 582 ~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~~~~ 623 (625)
.. ..+.+...++.|||.+.. -+.|.+|++....++
T Consensus 283 ~~-~~~~~~~~~g~L~v~~~~------~~~i~~~~~~~~~~~ 317 (322)
T 2fp8_A 283 GE-HFEQIQEHDGLLYIGTLF------HGSVGILVYDKKGNS 317 (322)
T ss_dssp TS-CCCEEEEETTEEEEECSS------CSEEEEEEC------
T ss_pred cc-cceEEEEeCCEEEEeecC------CCceEEEecccccCc
Confidence 11 223333445688876431 256788888766654
No 394
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=29.55 E-value=4.7e+02 Score=26.65 Aligned_cols=70 Identities=16% Similarity=0.027 Sum_probs=38.1
Q ss_pred cCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEc
Q 048754 538 PCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCL 617 (625)
Q Consensus 538 ~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~ 617 (625)
.+++.+++++.+.+. ...+|++|+ .+..+..+... .....+....+|++.++.+..++ ...||++++
T Consensus 159 pDG~~la~~~~~~~~--~~~i~~~d~--~~g~~~~l~~~-----~~~~~~~~~SpDG~~l~~~~~~~----~~~i~~~d~ 225 (582)
T 3o4h_A 159 IRGDLIAGLGFFGGG--RVSLFTSNL--SSGGLRVFDSG-----EGSFSSASISPGMKVTAGLETAR----EARLVTVDP 225 (582)
T ss_dssp EETTEEEEEEEEETT--EEEEEEEET--TTCCCEEECCS-----SCEEEEEEECTTSCEEEEEECSS----CEEEEEECT
T ss_pred CCCCEEEEEEEcCCC--CeEEEEEcC--CCCCceEeecC-----CCccccceECCCCCEEEEccCCC----eeEEEEEcC
Confidence 366666665543221 246999999 57777776421 11113344445666655333222 246888887
Q ss_pred cCC
Q 048754 618 ASK 620 (625)
Q Consensus 618 ~~~ 620 (625)
++.
T Consensus 226 ~~~ 228 (582)
T 3o4h_A 226 RDG 228 (582)
T ss_dssp TTC
T ss_pred CCC
Confidence 653
No 395
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=28.47 E-value=4.8e+02 Score=26.44 Aligned_cols=59 Identities=15% Similarity=0.122 Sum_probs=28.8
Q ss_pred ecC-CEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 537 MPC-GRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 537 ~~~-~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
..+ ++.++.|+. ...+.+||+ .+.+....-..........-.++... ++..++.|+.++
T Consensus 215 ~~~~~~~l~~~~~------dg~i~vwd~--~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~ 274 (615)
T 1pgu_A 215 SPDSGEFVITVGS------DRKISCFDG--KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA 274 (615)
T ss_dssp CSTTCCEEEEEET------TCCEEEEET--TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS
T ss_pred CCCCCCEEEEEeC------CCeEEEEEC--CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC
Confidence 335 677777775 347889998 44443332100000111111223333 556777777553
No 396
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=28.26 E-value=3.2e+02 Score=24.31 Aligned_cols=193 Identities=7% Similarity=-0.057 Sum_probs=96.6
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.||+.-.. .+.++++++... .-..+....... -+.+++. .+++||+.-.. .+.+++++++.
T Consensus 47 ~~~ly~~d~~------~~~I~~~~~~g~--~~~~~~~~~~~~---p~~ia~d~~~~~lyv~d~~-----~~~I~~~~~~g 110 (267)
T 1npe_A 47 DKVVYWTDIS------EPSIGRASLHGG--EPTTIIRQDLGS---PEGIALDHLGRTIFWTDSQ-----LDRIEVAKMDG 110 (267)
T ss_dssp TTEEEEEETT------TTEEEEEESSSC--CCEEEECTTCCC---EEEEEEETTTTEEEEEETT-----TTEEEEEETTS
T ss_pred CCEEEEEECC------CCEEEEEecCCC--CcEEEEECCCCC---ccEEEEEecCCeEEEEECC-----CCEEEEEEcCC
Confidence 5788887642 234899998763 222221111111 1333433 35689988642 24688999875
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG 472 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 472 (625)
. .-..+..... ... ...+.- +++.+|+..... ..+.+++++++... -..+..... ..-.++++-.
T Consensus 111 ~--~~~~~~~~~~--~~P-~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~dg~~--~~~~~~~~~---~~P~gia~d~ 176 (267)
T 1npe_A 111 T--QRRVLFDTGL--VNP-RGIVTDPVRGNLYWTDWNR----DNPKIETSHMDGTN--RRILAQDNL---GLPNGLTFDA 176 (267)
T ss_dssp C--SCEEEECSSC--SSE-EEEEEETTTTEEEEEECCS----SSCEEEEEETTSCC--CEEEECTTC---SCEEEEEEET
T ss_pred C--CEEEEEECCC--CCc-cEEEEeeCCCEEEEEECCC----CCcEEEEEecCCCC--cEEEEECCC---CCCcEEEEcC
Confidence 4 2222211110 111 223333 267899875321 12478888875433 222221111 1223444433
Q ss_pred -CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC
Q 048754 473 -RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG 551 (625)
Q Consensus 473 -~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 551 (625)
++.||+.-.. .+.++++|++. ..-..+... ...| .... ..++.||+.-..
T Consensus 177 ~~~~lyv~d~~---------~~~I~~~~~~g--~~~~~~~~~-----------~~~P---~gi~-~d~~~lyva~~~--- 227 (267)
T 1npe_A 177 FSSQLCWVDAG---------THRAECLNPAQ--PGRRKVLEG-----------LQYP---FAVT-SYGKNLYYTDWK--- 227 (267)
T ss_dssp TTTEEEEEETT---------TTEEEEEETTE--EEEEEEEEC-----------CCSE---EEEE-EETTEEEEEETT---
T ss_pred CCCEEEEEECC---------CCEEEEEecCC--CceEEEecC-----------CCCc---eEEE-EeCCEEEEEECC---
Confidence 4588887432 36889999873 221122111 1112 2333 337899997432
Q ss_pred CCCCCcEEEEeCCCCCCCeE
Q 048754 552 LHSPSQLFLLDPSEEKPSWR 571 (625)
Q Consensus 552 ~~~~~~v~~~d~~~~~~~W~ 571 (625)
.+.|+++|+ .+.+-.
T Consensus 228 ---~~~v~~~d~--~~g~~~ 242 (267)
T 1npe_A 228 ---TNSVIAMDL--AISKEM 242 (267)
T ss_dssp ---TTEEEEEET--TTTEEE
T ss_pred ---CCeEEEEeC--CCCCce
Confidence 458999998 444433
No 397
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=27.90 E-value=3.6e+02 Score=24.83 Aligned_cols=209 Identities=9% Similarity=-0.040 Sum_probs=97.0
Q ss_pred ceEEE--CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCC-CCCccceeEEEEc-CCEEEEEccCCC------
Q 048754 310 SACAA--GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSS-PPGRWGHTLSSLN-GSWLVVFGGCGR------ 379 (625)
Q Consensus 310 ~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~-p~~r~~~~~~~~~-~~~iyv~GG~~~------ 379 (625)
+++.. ++.|||.... +.++++|+.+ ...+.+..... .....-..+++.. ++.||+.-....
T Consensus 84 gi~~~~~~g~l~v~d~~-------~~i~~~d~~~--g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~ 154 (322)
T 2fp8_A 84 DISYNLQNNQLYIVDCY-------YHLSVVGSEG--GHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV 154 (322)
T ss_dssp EEEEETTTTEEEEEETT-------TEEEEECTTC--EECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred eEEEcCCCCcEEEEECC-------CCEEEEeCCC--CEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccc
Confidence 34444 5789987432 1278888764 33443321111 0111122344444 557888642210
Q ss_pred ------CCccccEEEEECCCCCCEEEEcCC-CCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCC-Cc
Q 048754 380 ------QGLLNDVFVLDLDAKQPTWIEVSG-GAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDK-PM 450 (625)
Q Consensus 380 ------~~~~~~~~~~d~~t~~~~W~~~~~-~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~-~~ 450 (625)
......+++||+.+. ....+.. ...| ...+.. +++.+||.-. ..+.+++|+++... ..
T Consensus 155 ~~~~~~~~~~g~v~~~d~~~~--~~~~~~~~~~~p-----~gia~~~dg~~lyv~d~------~~~~I~~~~~~~~~~~~ 221 (322)
T 2fp8_A 155 QQIMDTSDKTGRLIKYDPSTK--ETTLLLKELHVP-----GGAEVSADSSFVLVAEF------LSHQIVKYWLEGPKKGT 221 (322)
T ss_dssp HHHHHHTCCCEEEEEEETTTT--EEEEEEEEESCC-----CEEEECTTSSEEEEEEG------GGTEEEEEESSSTTTTC
T ss_pred ceehcccCCCceEEEEeCCCC--EEEEeccCCccC-----cceEECCCCCEEEEEeC------CCCeEEEEECCCCcCCc
Confidence 012356999999877 5544321 1112 222222 3446888532 12578999986421 11
Q ss_pred eEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCC-cccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCc
Q 048754 451 WREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGH-LRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPR 529 (625)
Q Consensus 451 W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~-~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r 529 (625)
...+.. .+. -..+++-.++.||+......... .......+.+||++ ...-..+... .+. + ..
T Consensus 222 ~~~~~~--~~g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~--G~~~~~~~~~--------~g~-~-~~ 284 (322)
T 2fp8_A 222 AEVLVK--IPN---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF--GNILEVIPLP--------PPF-A-GE 284 (322)
T ss_dssp EEEEEE--CSS---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT--SCEEEEEECC--------TTT-T-TS
T ss_pred cceEEe--CCC---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC--CCEEEEEECC--------CCC-c-cc
Confidence 332221 111 23444445557888743211000 00002467888876 3233333221 011 0 11
Q ss_pred cceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 530 LDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 530 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
. .+.+...+++|||.... .+.|.+|++.
T Consensus 285 ~-~~~~~~~~g~L~v~~~~------~~~i~~~~~~ 312 (322)
T 2fp8_A 285 H-FEQIQEHDGLLYIGTLF------HGSVGILVYD 312 (322)
T ss_dssp C-CCEEEEETTEEEEECSS------CSEEEEEEC-
T ss_pred c-ceEEEEeCCEEEEeecC------CCceEEEecc
Confidence 1 22233348899987432 5678889883
No 398
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=27.33 E-value=4.7e+02 Score=26.00 Aligned_cols=151 Identities=9% Similarity=-0.005 Sum_probs=71.4
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCC--CCCCCCccceEEEEc-CCEEEEEcCcCCCCceeceEEEEe
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGG--APPLPRSWHSSCIIE-GSKLVVSGGCTDAGVLLSDTYLLD 443 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~--~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d 443 (625)
..+++|+|-|. ..|+++.......-..+... ..|.. --++.... ++++|+|-| +.+|+|+
T Consensus 271 ~~ge~y~Fkg~-------~~wr~~~~~~~~~p~~I~~~Wp~LP~~--iDAa~~~~~~g~~~fFKg--------~~~W~~~ 333 (450)
T 1su3_A 271 IRGEVMFFKDR-------FYMRTNPFYPEVELNFISVFWPQLPNG--LEAAYEFADRDEVRFFKG--------NKYWAVQ 333 (450)
T ss_dssp ETTEEEEEETT-------EEEECCTTSSSCEEEEGGGTCTTSCSS--CCEEEEEGGGTEEEEEET--------TEEEEEE
T ss_pred cCCeEEEEeCC-------EEEEEcCCCCcccceehhHhccCCCCC--eeEEEEEcCCCeEEEEeC--------CEEEEec
Confidence 35689999873 45666654331122223221 11221 12333332 568999877 3567776
Q ss_pred cCCCCCce-EEcC-CCCCCC--CCCcceEEEE-CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeee-ccccC
Q 048754 444 LTTDKPMW-REIP-TSWSPP--SRLGHSLSVY-GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLEC-NAFTG 517 (625)
Q Consensus 444 ~~~~~~~W-~~~~-~~~~p~--~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~-~~~~~ 517 (625)
-..-...+ ..+. .-+.|. .... ++... .++++|+|=| +..|+||.... .+.. .|...
T Consensus 334 ~~~~~~gyP~~i~~~~g~P~~~~~ID-AA~~~~~~~k~yfFkG-----------~~yw~yd~~~~-----~~~~gYPk~I 396 (450)
T 1su3_A 334 GQNVLHGYPKDIYSSFGFPRTVKHID-AALSEENTGKTYFFVA-----------NKYWRYDEYKR-----SMDPGYPKMI 396 (450)
T ss_dssp TTEECTTCSEEHHHHHCCCTTCCCCC-EEEEETTTTEEEEEET-----------TEEEEEETTTT-----EECSSCSEEH
T ss_pred CCcccCCCceeeehhhcCCCCCCccc-eEEEEcCCCeEEEEeC-----------CEEEEEeCCCc-----cccCCCCcch
Confidence 31100001 1111 001222 1222 23333 3469999966 68999987521 1111 11000
Q ss_pred cCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 518 VGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 518 ~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
. .+.+-.+..-.+|+.. ++++|.|-|. ..|+||.
T Consensus 397 ~---~~fpgip~~iDAA~~~-~g~~YFFkg~--------~ywr~d~ 430 (450)
T 1su3_A 397 A---HDFPGIGHKVDAVFMK-DGFFYFFHGT--------RQYKFDP 430 (450)
T ss_dssp H---HHSTTSCSCCSEEEEE-TTEEEEEETT--------EEEEEET
T ss_pred h---hcCCCCCCCccEEEEc-CCeEEEEeCC--------EEEEEEC
Confidence 0 0011122223355555 8899999664 6789997
No 399
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=27.14 E-value=4e+02 Score=25.08 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=18.2
Q ss_pred eEEEEecCCE-EEEEecCCCCCCCCCcEEEEeCCCCCCCeEEE
Q 048754 532 HVAVSMPCGR-IIIFGGSIAGLHSPSQLFLLDPSEEKPSWRIL 573 (625)
Q Consensus 532 ~~~~~~~~~~-l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v 573 (625)
+.+....+++ ||+.. . ..+.|++|++. .+.+...+
T Consensus 148 ~~~~~spdG~~l~~~~-~-----~~~~v~~~~~~-~~g~~~~~ 183 (365)
T 1jof_A 148 HGMVFDPTETYLYSAD-L-----TANKLWTHRKL-ASGEVELV 183 (365)
T ss_dssp EEEEECTTSSEEEEEE-T-----TTTEEEEEEEC-TTSCEEEE
T ss_pred eEEEECCCCCEEEEEc-C-----CCCEEEEEEEC-CCCCEEEe
Confidence 4444444554 55542 1 13579999983 14555433
No 400
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=26.66 E-value=5.8e+02 Score=26.78 Aligned_cols=234 Identities=9% Similarity=0.004 Sum_probs=0.0
Q ss_pred CeEEEeccCCCCce---EEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCC
Q 048754 333 DTFVLNLDAANPEW---RRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLP 409 (625)
Q Consensus 333 ~~~~~~~~~~~~~W---~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~ 409 (625)
.++++|+.+ .+. .++. .........-++++|..... ++++++|..++ .-..+... ...
T Consensus 91 ~i~~~d~~~--g~~~~~~~l~------~~~~~~~~SPDG~~la~~~~-------~~i~~~~~~~g--~~~~l~~~--~~~ 151 (719)
T 1z68_A 91 TYYIYDLSN--GEFVRGNELP------RPIQYLCWSPVGSKLAYVYQ-------NNIYLKQRPGD--PPFQITFN--GRE 151 (719)
T ss_dssp EEEEEETTT--TEECCSSCCC------SSBCCEEECSSTTCEEEEET-------TEEEEESSTTS--CCEECCCC--CBT
T ss_pred EEEEEECCC--CccccceecC------cccccceECCCCCEEEEEEC-------CeEEEEeCCCC--CcEEEecC--CCc
Q ss_pred Cccc-----------------eEEEEcCCEEEEEcCcCCCC----------------------------ceeceEEEEec
Q 048754 410 RSWH-----------------SSCIIEGSKLVVSGGCTDAG----------------------------VLLSDTYLLDL 444 (625)
Q Consensus 410 r~~~-----------------~~~~~~~~~iyv~GG~~~~~----------------------------~~~~~~~~~d~ 444 (625)
..-. +.....+++.++++..+... .....++++|+
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~ 231 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT 231 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES
T ss_pred CCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC
Q ss_pred CCCCCc-eEEcCCCCCC-----CCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEE----cCCCCCceeEee---
Q 048754 445 TTDKPM-WREIPTSWSP-----PSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTID----LGDEEPQWKQLE--- 511 (625)
Q Consensus 445 ~~~~~~-W~~~~~~~~p-----~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d----~~~~~~~W~~~~--- 511 (625)
++.... |..+. .| ...+-.+.....++++++......... .+++++| +. +.++..+.
T Consensus 232 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~-----~~l~~~d~~~~~~--~g~~~~~~~~~ 301 (719)
T 1z68_A 232 TYPAYVGPQEVP---VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNV-----SVLSICDFREDWQ--TWDCPKTQEHI 301 (719)
T ss_dssp SCHHHHCCEECC---CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTE-----EEEEEEEECSSSS--SEECCGGGEEE
T ss_pred CCCCccceeEcc---CCccCCCCcceEEEeEEeCCCeEEEEEeccccCe-----EEEEEEcccCCCC--CCceEEEEecc
Q ss_pred -eccccCcCCCCCCCCCCccc-----eEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCc
Q 048754 512 -CNAFTGVGSQSAVVPPPRLD-----HVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWG 585 (625)
Q Consensus 512 -~~~~~~~~~~~~~~p~~r~~-----~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~ 585 (625)
.. ...... ..++.-.+..+++......+.. .+|.+|+ .+.....+ ........
T Consensus 302 ~~~------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~---~l~~~~~--~~~~~~~l----t~~~~~v~ 360 (719)
T 1z68_A 302 EES------------RTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYK---HIHYIKD--TVENAIQI----TSGKWEAI 360 (719)
T ss_dssp EEC------------SSSCSSSSSCCCCEECTTSSCEEEEEECTTSCE---EEEEESS--CSTTCEEC----SCSSSCEE
T ss_pred ccc------------CCceEccccCCccEECCCCCeEEEEEEccCCce---EEEEEEC--CCCceEec----ccCceEEE
Q ss_pred ceEEEECCcEEEEEcCc--CCCCCccCceEEEEccC
Q 048754 586 HSTCVVGGTRVLVLGGH--TGEEWVLNELHELCLAS 619 (625)
Q Consensus 586 ~~~~~~~~~~i~i~GG~--~~~~~~~~d~~~~~~~~ 619 (625)
..... .++.|+..+.. .... ...+|.+++.+
T Consensus 361 ~~~~~-d~~~i~~~~~~~~~~~~--~~~l~~~~~~~ 393 (719)
T 1z68_A 361 NIFRV-TQDSLFYSSNEFEEYPG--RRNIYRISIGS 393 (719)
T ss_dssp EEEEE-CSSEEEEEESCGGGCTT--CBEEEEEECSS
T ss_pred EEEEE-eCCEEEEEEecCCCCCc--eEEEEEEeCCC
No 401
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=26.08 E-value=3.4e+02 Score=23.88 Aligned_cols=107 Identities=14% Similarity=0.162 Sum_probs=53.0
Q ss_pred ECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccC--CCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEEC
Q 048754 314 AGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVK--SSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDL 391 (625)
Q Consensus 314 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~ 391 (625)
.++++|+|=|. ..|+++.......=..|... ++|. ... ++... ++++|+|-| +..|+|+.
T Consensus 27 ~~g~~yfFkg~--------~~Wr~~~~~~~~~p~~Is~~wpgLP~-~ID-AA~~~-~~~~yfFkG-------~~yw~~~~ 88 (219)
T 1hxn_A 27 NHGATYVFSGS--------HYWRLDTNRDGWHSWPIAHQWPQGPS-TVD-AAFSW-EDKLYLIQD-------TKVYVFLT 88 (219)
T ss_dssp TTSCEEEEETT--------EEEESSSSSCTTCCEEGGGTCTTSCS-SCS-EEEEE-TTEEEEEET-------TEEEEEEC
T ss_pred CCCcEEEEeCC--------EEEEEcCCCCCCCceEhhhhccCCCC-Ccc-EEEEE-CCcEEEecC-------CEEEEEeC
Confidence 36788988773 14555533211111223211 2232 222 23334 678999977 46899986
Q ss_pred CCC----CCEEEEcCC-CCCCCC---CccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 392 DAK----QPTWIEVSG-GAPPLP---RSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 392 ~t~----~~~W~~~~~-~~~p~~---r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
.++ ..--..+.. ...|.. ..-.++... .++++|+|-| +..|.||..+
T Consensus 89 ~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG--------~~ywr~d~~~ 144 (219)
T 1hxn_A 89 KGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG--------RRLWWLDLKS 144 (219)
T ss_dssp SSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET--------TEEEEEEGGG
T ss_pred CCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC--------CEEEEEeCCC
Confidence 532 001122221 112322 112233333 4568999987 4679999643
No 402
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=24.91 E-value=6e+02 Score=26.37 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=84.4
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEE---EcCCEEEEEccCCC------------
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSS---LNGSWLVVFGGCGR------------ 379 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~---~~~~~iyv~GG~~~------------ 379 (625)
+.++||--.. .+.+.++|+.+ .+-.++- ..|....-|.++. -+++++|+.+.+..
T Consensus 101 G~~lfVnd~~------~~rVavIdl~t--~~~~~ii--~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 101 GRFLFMNDKA------NTRVARVRCDV--MKCDAIL--EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEEEEETT------TTEEEEEETTT--TEEEEEE--ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred CCEEEEEcCC------CCEEEEEECCC--ceEeeEE--eCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence 5578873322 23389999987 4443321 2333334455554 24678888864421
Q ss_pred CCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcC-----------------------------
Q 048754 380 QGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCT----------------------------- 430 (625)
Q Consensus 380 ~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~----------------------------- 430 (625)
..+.+.+-++|..+.+..|+-.-++. | .+..+..+++.+|+.---+
T Consensus 171 ~~~~~~vtvID~~t~~v~~qI~Vgg~-p----d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v 245 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWEVAWQVLVSGN-L----DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI 245 (595)
T ss_dssp GGEEEEEEEEETTTTEEEEEEEESSC-C----CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred cccCceEEEEECCCCeEEEEEEeCCC-c----cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEec
Confidence 22456788999999877787433221 2 1222333444444442111
Q ss_pred --CCCceeceEEEEecCCCCC-c-eEEcCCCCCCCCCCcceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 431 --DAGVLLSDTYLLDLTTDKP-M-WREIPTSWSPPSRLGHSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 431 --~~~~~~~~~~~~d~~~~~~-~-W~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
......+.+-++|..+... . -..+ |.+..-|++.+-.++ .+|+.+.. .+.+.+||..
T Consensus 246 ~~Gk~~~i~~V~VID~~~~~~~~~~~~I-----pvg~~PhGv~~sPDGk~v~V~~~~---------s~~VsVid~~ 307 (595)
T 1fwx_A 246 AAGDYQELNGVKVVDGRKEASSLFTRYI-----PIANNPHGCNMAPDKKHLCVAGKL---------SPTVTVLDVT 307 (595)
T ss_dssp HHTCSEEETTEEEEECSGGGCCSSEEEE-----EEESSCCCEEECTTSSEEEEECTT---------SSBEEEEEGG
T ss_pred cCCCeeEECcEEEEeCcccCCceeEEEE-----ecCCCceEEEEcCCCCEEEEeCCC---------CCeEEEEECc
Confidence 0112345677778655210 1 1122 223344777776554 56666554 4889999987
No 403
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=24.42 E-value=2.4e+02 Score=27.49 Aligned_cols=75 Identities=8% Similarity=-0.044 Sum_probs=38.8
Q ss_pred CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCC--EEEEEecCC
Q 048754 472 GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG--RIIIFGGSI 549 (625)
Q Consensus 472 ~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~--~l~v~GG~~ 549 (625)
+.+++|+.-+....+.-....+.++++|+. +++.+... +.+....++....++ .||+.-+.
T Consensus 290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~----t~kv~~~i------------~vg~~~~~lavs~D~~~~ly~tn~~- 352 (386)
T 3sjl_D 290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAK----TGERLAKF------------EMGHEIDSINVSQDEKPLLYALSTG- 352 (386)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETT----TCCEEEEE------------EEEEEECEEEECSSSSCEEEEEETT-
T ss_pred CCCeEEEEeccccccccCCCCCEEEEEECC----CCeEEEEE------------ECCCCcceEEECCCCCeEEEEEcCC-
Confidence 345899963221111111123789999998 33444433 222222233333354 46665442
Q ss_pred CCCCCCCcEEEEeCCCCCCCe
Q 048754 550 AGLHSPSQLFLLDPSEEKPSW 570 (625)
Q Consensus 550 ~~~~~~~~v~~~d~~~~~~~W 570 (625)
.++|.+||. .+.+-
T Consensus 353 -----~~~VsViD~--~t~k~ 366 (386)
T 3sjl_D 353 -----DKTLYIHDA--ESGEE 366 (386)
T ss_dssp -----TTEEEEEET--TTCCE
T ss_pred -----CCeEEEEEC--CCCcE
Confidence 568999999 45443
No 404
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=24.40 E-value=5.1e+02 Score=25.38 Aligned_cols=108 Identities=10% Similarity=0.134 Sum_probs=56.4
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
++.||+.--. +.+.++|+.++ ....+.. +..+-.+-++..+++.+|+...... .....++.++.+..
T Consensus 149 ~g~Lyv~d~~------~~I~~id~~~~--~v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~--~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 149 HNHLYLVGEQ------HPTRLIDFEKE--YVSTVYS---GLSKVRTICWTHEADSMIITNDQNN--NDRPNNYILTRESG 215 (430)
T ss_dssp EEEEEEEEBT------EEEEEEETTTT--EEEEEEC---CCSCEEEEEECTTSSEEEEEECCSC--TTSEEEEEEEGGGT
T ss_pred CCeEEEEeCC------CcEEEEECCCC--EEEEEec---CCCCcceEEEeCCCCEEEEEeCCCC--cccceEEEEeCCCc
Confidence 4578887532 67899999887 6666543 1122222222224556888754221 12224566665332
Q ss_pred CCceEEcCCCCCCCCCCcceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 448 KPMWREIPTSWSPPSRLGHSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 448 ~~~W~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
-.....+.. .. .-+.+++.. ++.||+.--. ...+++|+++.
T Consensus 216 ~~~~~~l~~--~~---~p~giavdp~~g~lyv~d~~---------~~~V~~~~~~~ 257 (430)
T 3tc9_A 216 FKVITELTK--GQ---NCNGAETHPINGELYFNSWN---------AGQVFRYDFTT 257 (430)
T ss_dssp SCSEEEEEE--CS---SCCCEEECTTTCCEEEEETT---------TTEEEEEETTT
T ss_pred eeeeeeecc--CC---CceEEEEeCCCCEEEEEECC---------CCEEEEEECCC
Confidence 111122221 11 224555554 5578886321 36899999873
No 405
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=24.21 E-value=4.1e+02 Score=24.19 Aligned_cols=56 Identities=11% Similarity=0.027 Sum_probs=29.1
Q ss_pred CCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 332 DDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 332 ~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
..++++|..+ .++..+. ... . -...+.. +++.+|+..........+.+++||+...
T Consensus 169 ~~v~~~d~~~--g~~~~~~--~~~--~-p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 169 HSVYRLPPDG--SPLQRMA--DLD--H-PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp EEEEEECSSS--CCCEEEE--EES--S-EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred CeEEEEcCCC--CcEEEEe--cCC--C-CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence 4588888865 4566552 111 1 1223332 3456888754321111257899998765
No 406
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=23.75 E-value=4.7e+02 Score=24.69 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=31.5
Q ss_pred ecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCC
Q 048754 537 MPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGE 605 (625)
Q Consensus 537 ~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~ 605 (625)
..+++.++.++.+... ...++.+++ ....+..............-.++.+.+++++++.|+.++.
T Consensus 228 spdg~~l~~~s~d~~~--~~~i~~~~~--~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~ 292 (365)
T 4h5i_A 228 IADDTVLIAASLKKGK--GIVLTKISI--KSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS 292 (365)
T ss_dssp EETTEEEEEEEESSSC--CEEEEEEEE--ETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC
T ss_pred cCCCCEEEEEecCCcc--eeEEeeccc--ccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE
Confidence 3477888887654321 224566676 3333332211000001111123444567788888887653
No 407
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=23.57 E-value=4.3e+02 Score=24.28 Aligned_cols=213 Identities=12% Similarity=0.041 Sum_probs=0.0
Q ss_pred CeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCcc
Q 048754 333 DTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSW 412 (625)
Q Consensus 333 ~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~ 412 (625)
.+|++|+.+ ..-.++ ..........+++.+++...........+|++|+.++ ....+... +. ..
T Consensus 44 ~l~~~d~~~--~~~~~l--------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g--~~~~l~~~--~~--~~ 107 (347)
T 2gop_A 44 TIVIENLKN--NARRFI--------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL--SSKKILEA--KN--IR 107 (347)
T ss_dssp EEEEEETTT--CCEEEE--------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT--EEEEEEEE--SE--EE
T ss_pred eEEEEeCCC--CceEEc--------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC--ceEEEEcC--CC--cc
Q ss_pred ceEEEEcCCEEEEEc--------------------CcCCCCceeceEEEEecCCCCCce-EEcCCCCCCCCCCcceEEEE
Q 048754 413 HSSCIIEGSKLVVSG--------------------GCTDAGVLLSDTYLLDLTTDKPMW-REIPTSWSPPSRLGHSLSVY 471 (625)
Q Consensus 413 ~~~~~~~~~~iyv~G--------------------G~~~~~~~~~~~~~~d~~~~~~~W-~~~~~~~~p~~r~~~~~~~~ 471 (625)
.....-+++.|++.. |..-.......++++|+.+.. . ..+.. + ........
T Consensus 108 ~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~--~~~~l~~---~---~~~~~~~s 179 (347)
T 2gop_A 108 SLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE--VIEEFEK---P---RFSSGIWH 179 (347)
T ss_dssp EEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE--EEEEEEE---E---TTCEEEEE
T ss_pred ceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe--EEeeecC---C---CcccccCC
Q ss_pred CCcEEEEEcCCcCCCC----cccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEec
Q 048754 472 GRTKVLMFGGLAKSGH----LRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGG 547 (625)
Q Consensus 472 ~~~~l~v~GG~~~~~~----~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG 547 (625)
.++ +++.+....... . .++|.+| +.++..+. .. .....+ ..+++.+++++
T Consensus 180 pdg-~~~~~~~~~~~~~~~~~----~~l~~~d----~~~~~~l~--------------~~--~~~~~~-spdg~~l~~~~ 233 (347)
T 2gop_A 180 RDK-IVVNVPHREIIPQYFKF----WDIYIWE----DGKEEKMF--------------EK--VSFYAV-DSDGERILLYG 233 (347)
T ss_dssp TTE-EEEEEECCCSSCCSSCC----EEEEEEE----TTEEEEEE--------------EE--ESEEEE-EECSSCEEEEE
T ss_pred CCe-EEEEEeccccccccccc----ccEEEeC----CCceEEec--------------cC--cceeeE-CCCCCEEEEEE
Q ss_pred CCC--CCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 548 SIA--GLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 548 ~~~--~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
... .......+|.+| +..+..+ .............+.++ +++.+..++
T Consensus 234 ~~~~~~~~~~~~l~~~d----~~~~~~l----~~~~~~~~~~~~~~sdg-~~~~~~~~~ 283 (347)
T 2gop_A 234 KPEKKYMSEHNKLYIYD----GKEVMGI----LDEVDRGVGQAKIKDGK-VYFTLFEEG 283 (347)
T ss_dssp CCSSSCCCSSCEEEEEC----SSCEEES----STTCCSEEEEEEEETTE-EEEEEEETT
T ss_pred ccccCCccccceEEEEC----CCceEec----cccCCcccCCccEEcCc-EEEEEecCC
No 408
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=22.95 E-value=5.1e+02 Score=24.86 Aligned_cols=64 Identities=20% Similarity=0.149 Sum_probs=33.9
Q ss_pred CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEE
Q 048754 420 GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTID 499 (625)
Q Consensus 420 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d 499 (625)
++.+++.|+.+ ..+.+||+.+....+.... .+....-.+++...++.+++.|+.+ ..+.+||
T Consensus 181 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~~~d---------g~i~iwd 242 (437)
T 3gre_A 181 EKSLLVALTNL------SRVIIFDIRTLERLQIIEN---SPRHGAVSSICIDEECCVLILGTTR---------GIIDIWD 242 (437)
T ss_dssp SCEEEEEEETT------SEEEEEETTTCCEEEEEEC---CGGGCCEEEEEECTTSCEEEEEETT---------SCEEEEE
T ss_pred CCCEEEEEeCC------CeEEEEeCCCCeeeEEEcc---CCCCCceEEEEECCCCCEEEEEcCC---------CeEEEEE
Confidence 34666666632 3688899866542222211 1011111223333345677777653 5688899
Q ss_pred cC
Q 048754 500 LG 501 (625)
Q Consensus 500 ~~ 501 (625)
+.
T Consensus 243 ~~ 244 (437)
T 3gre_A 243 IR 244 (437)
T ss_dssp TT
T ss_pred cC
Confidence 87
No 409
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=22.59 E-value=94 Score=29.76 Aligned_cols=116 Identities=11% Similarity=0.038 Sum_probs=0.0
Q ss_pred EEEEccCCCCCccccEEEEECCCCCCEEEEcCC--CCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 371 LVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSG--GAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 371 iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~--~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
++++|..++ .++.+|..+++..|+.-.. .++-..+..... .++.+|++....++ .++.|+..+..
T Consensus 12 ~V~v~t~dG-----~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~---~~~~~~vv~p~~dG-----~l~a~~~~~G~ 78 (339)
T 2be1_A 12 ILIAADVEG-----GLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRL---ETYETLIIEPFGDG-----NIYYFNAHQGL 78 (339)
T ss_dssp EEEEEETTS-----CEEEEETTTTEEEEEECGGGSCCSEECCCSCTT---TSSEEEEECCSTTT-----EEEEEETTTEE
T ss_pred EEEEEeCCC-----eEEEEECCCCcEEEEecCCccCCcEEecCCccc---cCCcEEEEEECCCC-----EEEEEECCCCc
Q ss_pred CceE-EcCCCCCCCCCCcceEEEE-------CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeE
Q 048754 449 PMWR-EIPTSWSPPSRLGHSLSVY-------GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQ 509 (625)
Q Consensus 449 ~~W~-~~~~~~~p~~r~~~~~~~~-------~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~ 509 (625)
.+|. .++..-...|..+.+..++ .+ ..+++|+.+ ..++.+|..++...|+.
T Consensus 79 ~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~-g~Vy~Gs~~---------g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 79 QKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVED-EKVYTGSMR---------TIMYTINMLNGEIISAF 137 (339)
T ss_dssp EEEEEEHHHHHTTCSEEEECC----------CC-EEEEECEEE---------EEEEEEETTTCCEEEEE
T ss_pred EEeeeccccceeccccccCCCceeecccccccC-CEEEEEecC---------CEEEEEECCCCcEEEEE
No 410
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=22.20 E-value=2.8e+02 Score=21.64 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=20.3
Q ss_pred EEEEEEEeeCCCCCEEEEEEEEEeeec
Q 048754 143 NRLRLAPIRDDDGTVTHIIGIQIFSEA 169 (625)
Q Consensus 143 ~~~~~~~~~d~~g~~~~~i~~~~Dit~ 169 (625)
......|+.+++|+++|++.+..++..
T Consensus 101 ~~~~~~PV~~~~g~viGvv~vg~~l~~ 127 (131)
T 1p0z_A 101 SLRGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EEEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred eEEEEEeEECCCCCEEEEEEEEEEhHH
Confidence 334456999888999999988776653
No 411
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=21.41 E-value=7.1e+02 Score=26.51 Aligned_cols=104 Identities=16% Similarity=0.250 Sum_probs=54.6
Q ss_pred CCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCC----CccccEEEEECCCCCCEEEEcCCCCCC--CCCccceEE
Q 048754 343 NPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQ----GLLNDVFVLDLDAKQPTWIEVSGGAPP--LPRSWHSSC 416 (625)
Q Consensus 343 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~d~~t~~~~W~~~~~~~~p--~~r~~~~~~ 416 (625)
..+|+.+. ..|.....|.++...++.+|+..+-... .....+|+++-... +|+.+...... ..+++.+.+
T Consensus 231 G~tW~~~~--~~p~~~~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~--tW~~i~~~~~~~~~~~~~~~~i 306 (737)
T 2cn3_A 231 GVTWKAVP--GQPKGLLPHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTG--EWIDITPIPYSSSDNRFCFAGL 306 (737)
T ss_dssp TSCCEECT--TCCCSSEEEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTC--CEEECCSSCTTSTTCCSEEEEE
T ss_pred CCceEECC--CCCCcccceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCC--CEEEccCCCCCCcccccccccE
Confidence 36899874 4444333344443335678887543211 12346888887777 99998753111 224444444
Q ss_pred EE---cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEc
Q 048754 417 II---EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREI 454 (625)
Q Consensus 417 ~~---~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 454 (625)
.+ +.+.+|+.+.... ..+..+|.-...-.+|+.+
T Consensus 307 ~v~p~~~~~ly~~~~~~~----~~~~~l~~S~DgG~tW~~~ 343 (737)
T 2cn3_A 307 AVDRQNPDIIMVTSMNAW----WPDEYIFRSTDGGATWKNI 343 (737)
T ss_dssp EECTTCTTCEEEEEECCC----SSCCCEEEESSTTSSCEES
T ss_pred EEcCCCCCEEEEEecccC----CCCccEEEeCCCCccccch
Confidence 44 3357887654210 0112233332344568877
No 412
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=21.24 E-value=5.3e+02 Score=24.42 Aligned_cols=101 Identities=20% Similarity=0.177 Sum_probs=54.6
Q ss_pred CCeEEEecc---CCCCceEEcccCCCCCC-------cc-ce-eEEEEcCCEEEEEccCCCCCccccEEEEECCCCCC-EE
Q 048754 332 DDTFVLNLD---AANPEWRRVSVKSSPPG-------RW-GH-TLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQP-TW 398 (625)
Q Consensus 332 ~~~~~~~~~---~~~~~W~~~~~~~~p~~-------r~-~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~-~W 398 (625)
+.+.+||+. +....|..- .+..... +. +. -+++-..+.+||.+.+.- +.+++++++.... .|
T Consensus 100 ~~v~~~Dl~~~~tg~~~~~~d-L~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~----~~I~rV~pdG~~~~~~ 174 (334)
T 2p9w_A 100 SSFHSFNLPLSENSKPVWSVN-FEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM----PAIARVSADGKTVSTF 174 (334)
T ss_dssp CEEEEEESSCCTTCCCSEEEE-SHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS----CEEEEECTTSCCEEEE
T ss_pred CEEEEEcCCcCCCCCEEEEec-CccccccccccccccccCCceeEECCCCCEEEeCCCCC----CeEEEEeCCCCEEeee
Confidence 458899998 544566532 1110000 11 12 223223456999765431 4599999975422 25
Q ss_pred EEcCCCCCCCCCccceEEEEc--CCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 399 IEVSGGAPPLPRSWHSSCIIE--GSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 399 ~~~~~~~~p~~r~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
-.-.. .+..+.+..+.++. ++.+++..+ . ..++.||+.+
T Consensus 175 ~~~~~--~~~~~~G~nGIv~~pdg~~Liv~~~-~------g~L~~fD~~~ 215 (334)
T 2p9w_A 175 AWESG--NGGQRPGYSGITFDPHSNKLIAFGG-P------RALTAFDVSK 215 (334)
T ss_dssp EECCC--CSSSCCSCSEEEEETTTTEEEEESS-S------SSEEEEECSS
T ss_pred eecCC--CcccccCcceEEEeCCCCEEEEEcC-C------CeEEEEcCCC
Confidence 43221 23346566666663 656777654 1 4789999863
No 413
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=21.12 E-value=5.5e+02 Score=24.53 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=31.9
Q ss_pred eEEEeccCCCCceEEcccCCCCCCccceeEEEEc--CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCC
Q 048754 334 TFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLN--GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSG 403 (625)
Q Consensus 334 ~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~ 403 (625)
+++++......+|..+.. . +....-++++... .+.||+.+..+..+ .-+++.+-... +|+.+..
T Consensus 33 l~~~~~~~~g~~W~~~~~-~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g--~gl~~s~D~G~--tW~~~~~ 98 (394)
T 3b7f_A 33 AWFLASDPARRTWELRGP-V-FLGHTIHHIVQDPREPERMLMAARTGHLG--PTVFRSDDGGG--NWTEATR 98 (394)
T ss_dssp EEEEEECTTSCSEEEEEE-E-STTSEEEEEEECSSSTTCEEEEEEC--CC--EEEEEESSTTS--CCEECSB
T ss_pred eEEEECCCCCCCceECCc-c-CCCCceEEEEECCCCCCeEEEEecCCCCC--ccEEEeCCCCC--CceECCc
Confidence 667765432248997631 1 1112223333322 45688776432111 24666654445 8998864
No 414
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=20.13 E-value=7.2e+02 Score=25.53 Aligned_cols=210 Identities=12% Similarity=0.091 Sum_probs=0.0
Q ss_pred CCEEEEEcccCCCCCCC-------------CCeEEEeccCCCCceEEcccCCCCCCccc---------eeEEEEc----C
Q 048754 315 GNRLVLFGGEGVNMQPM-------------DDTFVLNLDAANPEWRRVSVKSSPPGRWG---------HTLSSLN----G 368 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~-------------~~~~~~~~~~~~~~W~~~~~~~~p~~r~~---------~~~~~~~----~ 368 (625)
++.||++.+........ ..++++.-.....+|..........+..+ +....-+ +
T Consensus 94 ~g~i~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~~~~G 173 (601)
T 1w8o_A 94 TGTIFNFHVYSQRQGFAGSRPGTDPADPNVLHANVATSTDGGLTWSHRTITADITPDPGWRSRFAASGEGIQLRYGPHAG 173 (601)
T ss_dssp TCCEEEEEEEESSCCTTTCCSCCCTTCTTSCEEEEEEESSTTSSCEEEECGGGSCCSTTCCEEEECSEECEECCSSTTTT
T ss_pred CCeEEEEEEeecCCCccccccCCCccCCceEEEEEEEecCCCCCCCCcccccccccCCCeeEEEecCCeEEEccCCCcCc
Q ss_pred CEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 369 SWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 369 ~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
..++.+-...+.........|..+.+. +|+..... +........+.+.++.++++.-..... ....++--....
T Consensus 174 ~l~~~~~~~~g~~~~~~~~~~S~D~G~-TW~~~~~~--~~~~~~~~v~~~~dG~l~~~~r~~~~~---~~~~~~~S~DgG 247 (601)
T 1w8o_A 174 RLIQQYTIINAAGAFQAVSVYSDDHGR-TWRAGEAV--GVGMDENKTVELSDGRVLLNSRDSARS---GYRKVAVSTDGG 247 (601)
T ss_dssp CEEEEEEEECTTSCEEEEEEEESSTTS-SCEECCCB--CSSCCSEEEEECTTSCEEEEECCTTCC---SEEEEEEESSTT
T ss_pred eEEEEEEEcCCCCceeEEEEEECCCCc-CccCCCCC--CCCCCcCEEEEeCCCEEEEEEeCCCCC---CCEEEEEEcCCC
Q ss_pred CceEEcCC-CCCCCCCCcceEEEE--------CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcC
Q 048754 449 PMWREIPT-SWSPPSRLGHSLSVY--------GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVG 519 (625)
Q Consensus 449 ~~W~~~~~-~~~p~~r~~~~~~~~--------~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~ 519 (625)
.+|+.+.. ..++.+.+..+++.+ .++.++++........- ..+.++--.++..+|......
T Consensus 248 ~tW~~~~~~~~l~~p~~~~s~~~~~~~~~~~~~~~~~l~~~~~~~~~~R----~~~~l~~S~D~G~tW~~~~~l------ 317 (601)
T 1w8o_A 248 HSYGPVTIDRDLPDPTNNASIIRAFPDAPAGSARAKVLLFSNAASQTSR----SQGTIRMSCDDGQTWPVSKVF------ 317 (601)
T ss_dssp SCCCCCEEEEEEECSSCCCEEEESSTTCCTTCSGGGCEEEEEECCSSSS----EEEEEEEESSTTSCCCEEEEE------
T ss_pred CCCCCCeecCcCCCCCccceEEEecccccCCCCCCCEEEEECCCCCCcc----cceEEEEeCCCCCCCCCceEe------
Q ss_pred CCCCCCCCCccceEEEEecCCEEEEE
Q 048754 520 SQSAVVPPPRLDHVAVSMPCGRIIIF 545 (625)
Q Consensus 520 ~~~~~~p~~r~~~~~~~~~~~~l~v~ 545 (625)
.+..-.+.+++...++.|+|+
T Consensus 318 -----~~~~~~Y~~l~~~~dg~i~~~ 338 (601)
T 1w8o_A 318 -----QPGSMSYSTLTALPDGTYGLL 338 (601)
T ss_dssp -----EEEECCCEEEEECTTSCEEEE
T ss_pred -----CCCCCCCCeEEEcCCCeEEEE
No 415
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=20.02 E-value=6.5e+02 Score=24.97 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=36.3
Q ss_pred cceEEEEecCCEEEEEecCCCCCCCCCc-----EEEEeCC----CCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEc
Q 048754 530 LDHVAVSMPCGRIIIFGGSIAGLHSPSQ-----LFLLDPS----EEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLG 600 (625)
Q Consensus 530 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~-----v~~~d~~----~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~G 600 (625)
..|+++...++.||.+|-...+.....+ -....+. .....+..|. .-..|++++..++.+|.+|
T Consensus 266 ~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia-------~G~~hs~~lt~~G~v~~wG 338 (473)
T 3of7_A 266 ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIA-------AGEHHSLILSQDGDLYSCG 338 (473)
T ss_dssp SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEE-------ECSSEEEEEETTSCEEEEE
T ss_pred CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEE-------eCCCeEEEEeCCCeEEEEE
Confidence 5678888878999999853322111100 1111110 0112344443 2346888888888999999
Q ss_pred C
Q 048754 601 G 601 (625)
Q Consensus 601 G 601 (625)
-
T Consensus 339 ~ 339 (473)
T 3of7_A 339 R 339 (473)
T ss_dssp E
T ss_pred C
Confidence 4
Done!