BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048755
(674 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 56/234 (23%)
Query: 1 MGGIGKTTLVKE--------------------VGRQAKENNLFE-KVISSRVSQTPQIKE 39
M G GK+ L E VG+Q K L + + + +R+ Q
Sbjct: 155 MAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQ------ 208
Query: 40 IQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPVADDNG 99
+++L L I+E + +R + L+K + L+ILDD+W S L+A +
Sbjct: 209 -DESFSQRLPLNIEEAKDRLR----ILMLRKHPRSLLILDDVWDSWVLKAF-------DS 256
Query: 100 GCKVLLTARSQDVLSCKMDCQQNFVVDVLN----EK--EAWSLFKKMTGDCIENGELKSV 153
C++LLT R + V M +VV V + EK E SLF M + +L
Sbjct: 257 QCQILLTTRDKSVTDSVMG--PKYVVPVESSLGKEKGLEILSLFVNM-----KKADLPEQ 309
Query: 154 ATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLKRPFLRSFSGTQAVAAY 207
A ++KEC G P+ +V + AL W L+QL+ + F + ++Y
Sbjct: 310 AHSIIKECKGSPL-VVSLIGALLRDFPNRWEYYLKQLQN---KQFKRIRKSSSY 359
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 94/218 (43%), Gaps = 53/218 (24%)
Query: 1 MGGIGKTTLVKE--------------------VGRQAKENNLFE-KVISSRVSQTPQIKE 39
M G GK+ L E VG+Q K L + + + +R+ Q
Sbjct: 161 MAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQ------ 214
Query: 40 IQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPVADDNG 99
+++L L I+E + +R + L+K + L+ILDD+W S L+A +
Sbjct: 215 -DESFSQRLPLNIEEAKDRLR----ILMLRKHPRSLLILDDVWDSWVLKAF-------DS 262
Query: 100 GCKVLLTARSQDVLSCKMDCQQNFVVDVLN----EK--EAWSLFKKMTGDCIENGELKSV 153
C++LLT R + V M +VV V + EK E SLF M + +L
Sbjct: 263 QCQILLTTRDKSVTDSVMG--PKYVVPVESSLGKEKGLEILSLFVNM-----KKADLPEQ 315
Query: 154 ATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLK 191
A ++KEC G P+ +V + AL W L+QL+
Sbjct: 316 AHSIIKECKGSPL-VVSLIGALLRDFPNRWEYYLKQLQ 352
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 41/212 (19%)
Query: 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKE-----------------IQRE 43
M G GK+ L E R +++L E S V K+ +
Sbjct: 155 MAGCGKSVLAAEAVR---DHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEES 211
Query: 44 IAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPVADDNGGCKV 103
+++L L I+E + +R + L+K + L+ILDD+W L+A + C++
Sbjct: 212 FSQRLPLNIEEAKDRLR----VLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQI 260
Query: 104 LLTARSQDVLSCKMDCQQNFVVD--VLNEK--EAWSLFKKMTGDCIENGELKSVATEVVK 159
LLT R + V M + V+ + EK E SLF M + +L + A ++K
Sbjct: 261 LLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKE-----DLPAEAHSIIK 315
Query: 160 ECAGLPIAIVPVAKALKNKSLYEWRNALRQLK 191
EC G P+ +V + AL W LRQL+
Sbjct: 316 ECKGSPL-VVSLIGALLRDFPNRWAYYLRQLQ 346
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 41/212 (19%)
Query: 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKE-----------------IQRE 43
M G GK+ L E R +++L E S V K+ +
Sbjct: 162 MAGCGKSVLAAEAVR---DHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEES 218
Query: 44 IAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPVADDNGGCKV 103
+++L L I+E + +R + L+K + L+ILDD+W L+A + C++
Sbjct: 219 FSQRLPLNIEEAKDRLR----VLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQI 267
Query: 104 LLTARSQDVLSCKMDCQQNFVVD--VLNEK--EAWSLFKKMTGDCIENGELKSVATEVVK 159
LLT + V M + V+ + EK E SLF M + +L + A ++K
Sbjct: 268 LLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKE-----DLPAEAHSIIK 322
Query: 160 ECAGLPIAIVPVAKALKNKSLYEWRNALRQLK 191
EC G P+ +V + AL W LRQL+
Sbjct: 323 ECKGSPL-VVSLIGALLRDFPNRWAYYLRQLQ 353
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 18/158 (11%)
Query: 391 DIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLE 450
D+A + +L K+ L L G+ ++ V + L ++ LDL+ V P ++ LS L+
Sbjct: 77 DLAPLKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQITDVTP---LAGLSNLQ 132
Query: 451 ELYIGQSPIM-WGKVGGVD-------GERRNASLDELNNLSKLTSLEILIQDEKTLPRDL 502
LY+ + I + G+ G + + L L NLSKLT+L+ D K D+
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLK--ADDNKI--SDI 188
Query: 503 SFFKMLQR-YRISIGYDWWS-VGPWDGISRKFKLKLTN 538
S L + + + S V P S F + LTN
Sbjct: 189 SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 15/97 (15%)
Query: 554 GIEDLTLDGLPDMKNVLCEP------GREVFPKLNRLQIEHNGNLVRLVDTMDC------ 601
G D+ G + N+ P G +VFP++ RL H GN D +
Sbjct: 343 GNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402
Query: 602 ---TPAPTIAFPLLESLFLRDLRNLEEICCGPLTAES 635
P +A S L ++ NL P AE+
Sbjct: 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEA 439
>pdb|1IO8|A Chain A, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO8|B Chain B, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
Length = 368
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 15 RQAKENNLFEKVISSRVSQTPQIKEIQREIAE--KLGLKIDEESETVRAW 62
++ +E NL+ K I + +P + R+ E KLG + EE E VR W
Sbjct: 232 QRIREENLYLKAIEEALRYSPPVMRTVRKTKERVKLGDQTIEEGEYVRVW 281
>pdb|1F4T|A Chain A, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
With 4- Phenylimidazole Bound
pdb|1F4T|B Chain B, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
With 4- Phenylimidazole Bound
pdb|1F4U|A Chain A, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
pdb|1F4U|B Chain B, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
pdb|1IO9|A Chain A, Thermophilic Cytochrome P450 (cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO9|B Chain B, Thermophilic Cytochrome P450 (cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO7|A Chain A, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO7|B Chain B, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
Length = 368
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 15 RQAKENNLFEKVISSRVSQTPQIKEIQREIAE--KLGLKIDEESETVRAW 62
++ +E NL+ K I + +P + R+ E KLG + EE E VR W
Sbjct: 232 QRIREENLYLKAIEEALRYSPPVMRTVRKTKERVKLGDQTIEEGEYVRVW 281
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,648,833
Number of Sequences: 62578
Number of extensions: 758186
Number of successful extensions: 2040
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2032
Number of HSP's gapped (non-prelim): 26
length of query: 674
length of database: 14,973,337
effective HSP length: 105
effective length of query: 569
effective length of database: 8,402,647
effective search space: 4781106143
effective search space used: 4781106143
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)