Query 048755
Match_columns 674
No_of_seqs 296 out of 3335
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 12:49:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.8E-69 8.2E-74 592.9 29.1 503 1-519 187-730 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.2E-56 2.7E-61 522.3 43.3 621 1-674 215-906 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3E-38 6.5E-43 316.5 13.1 250 1-253 27-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.1E-24 2.4E-29 255.2 19.1 351 308-672 118-486 (968)
5 PLN00113 leucine-rich repeat r 99.9 2.7E-24 5.8E-29 252.0 19.1 347 306-672 91-463 (968)
6 KOG0444 Cytoskeletal regulator 99.9 2.2E-24 4.7E-29 216.1 -4.7 340 304-674 28-375 (1255)
7 PLN03210 Resistant to P. syrin 99.9 1.4E-20 3E-25 220.6 19.6 300 307-653 588-909 (1153)
8 KOG4194 Membrane glycoprotein 99.8 6.5E-22 1.4E-26 197.2 4.6 342 305-669 99-447 (873)
9 KOG4194 Membrane glycoprotein 99.8 9.4E-22 2E-26 196.0 5.3 338 308-670 78-425 (873)
10 KOG0444 Cytoskeletal regulator 99.8 2.2E-22 4.7E-27 201.8 -3.4 331 307-668 54-393 (1255)
11 KOG0472 Leucine-rich repeat pr 99.8 7.9E-21 1.7E-25 181.4 -5.9 205 306-515 89-306 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 6.8E-19 1.5E-23 168.3 -8.5 240 305-564 65-308 (565)
13 KOG0618 Serine/threonine phosp 99.6 6.5E-18 1.4E-22 178.0 -6.8 333 310-671 47-486 (1081)
14 KOG0617 Ras suppressor protein 99.6 1.3E-17 2.9E-22 141.0 -4.7 170 320-505 23-195 (264)
15 KOG0618 Serine/threonine phosp 99.6 7.3E-17 1.6E-21 170.2 -3.3 230 398-650 240-489 (1081)
16 PRK15387 E3 ubiquitin-protein 99.6 5E-14 1.1E-18 153.7 17.7 252 312-648 205-456 (788)
17 PRK15370 E3 ubiquitin-protein 99.5 1.8E-13 3.9E-18 150.4 14.1 176 310-516 180-356 (754)
18 KOG0617 Ras suppressor protein 99.5 7.1E-16 1.5E-20 130.6 -3.8 153 304-459 29-185 (264)
19 PRK15387 E3 ubiquitin-protein 99.5 3.3E-13 7.1E-18 147.3 14.8 256 330-672 201-456 (788)
20 KOG4658 Apoptotic ATPase [Sign 99.4 8.3E-14 1.8E-18 155.3 5.3 317 319-655 512-847 (889)
21 PRK15370 E3 ubiquitin-protein 99.3 3.4E-12 7.3E-17 140.4 10.2 181 306-517 197-378 (754)
22 KOG4237 Extracellular matrix p 99.3 2.3E-13 5.1E-18 130.7 -3.5 145 312-458 50-199 (498)
23 KOG4237 Extracellular matrix p 99.1 3.3E-12 7.1E-17 122.9 -3.2 258 305-563 64-356 (498)
24 cd00116 LRR_RI Leucine-rich re 99.1 4.4E-11 9.6E-16 122.0 2.9 158 351-516 48-231 (319)
25 cd00116 LRR_RI Leucine-rich re 99.1 2.6E-11 5.6E-16 123.7 0.2 42 349-390 18-64 (319)
26 TIGR03015 pepcterm_ATPase puta 99.0 3.1E-08 6.8E-13 98.1 21.6 187 1-190 51-266 (269)
27 PF14580 LRR_9: Leucine-rich r 99.0 3.4E-10 7.4E-15 101.3 5.2 128 353-491 18-148 (175)
28 KOG0532 Leucine-rich repeat (L 98.9 3.3E-11 7.2E-16 121.4 -4.3 191 308-516 75-270 (722)
29 PF05729 NACHT: NACHT domain 98.9 7.1E-09 1.5E-13 94.4 10.8 135 2-141 9-163 (166)
30 KOG4341 F-box protein containi 98.9 5.3E-11 1.1E-15 115.7 -4.0 284 355-653 139-442 (483)
31 KOG0532 Leucine-rich repeat (L 98.9 9.4E-11 2E-15 118.2 -3.4 147 309-460 99-247 (722)
32 PF14580 LRR_9: Leucine-rich r 98.9 2.7E-09 5.8E-14 95.5 6.1 132 320-454 9-147 (175)
33 KOG3207 Beta-tubulin folding c 98.8 1E-09 2.2E-14 107.6 1.3 176 329-516 120-311 (505)
34 KOG1259 Nischarin, modulator o 98.8 1E-09 2.2E-14 102.1 -0.2 129 304-434 280-411 (490)
35 PRK04841 transcriptional regul 98.7 1.1E-07 2.3E-12 111.7 14.7 216 1-236 40-281 (903)
36 COG4886 Leucine-rich repeat (L 98.7 1.5E-08 3.2E-13 106.6 5.6 173 328-517 114-288 (394)
37 KOG4341 F-box protein containi 98.7 4E-10 8.6E-15 109.7 -6.8 116 552-672 319-437 (483)
38 KOG1259 Nischarin, modulator o 98.7 4.9E-09 1.1E-13 97.6 0.2 124 376-516 283-409 (490)
39 KOG3207 Beta-tubulin folding c 98.6 1.2E-08 2.6E-13 100.2 1.1 201 308-514 121-334 (505)
40 COG4886 Leucine-rich repeat (L 98.5 1.2E-07 2.7E-12 99.6 5.1 177 308-501 116-295 (394)
41 PRK00411 cdc6 cell division co 98.5 5.9E-06 1.3E-10 86.8 17.1 189 1-190 63-282 (394)
42 KOG2120 SCF ubiquitin ligase, 98.4 3.5E-09 7.5E-14 98.6 -8.2 85 399-494 185-271 (419)
43 COG2909 MalT ATP-dependent tra 98.4 4.7E-06 1E-10 89.5 13.1 251 1-271 45-334 (894)
44 PF13855 LRR_8: Leucine rich r 98.3 4.9E-07 1.1E-11 66.2 4.1 59 330-388 1-60 (61)
45 COG2256 MGS1 ATPase related to 98.3 5.9E-06 1.3E-10 81.3 12.5 141 1-167 56-208 (436)
46 KOG1909 Ran GTPase-activating 98.3 4.3E-08 9.4E-13 93.7 -2.7 84 328-411 28-132 (382)
47 PRK06893 DNA replication initi 98.3 3.2E-06 7E-11 80.8 9.5 143 2-173 48-205 (229)
48 PLN03150 hypothetical protein; 98.3 2E-06 4.3E-11 94.8 8.9 102 356-458 420-526 (623)
49 TIGR02928 orc1/cdc6 family rep 98.3 3.9E-05 8.4E-10 79.7 17.9 169 1-169 48-244 (365)
50 PF13173 AAA_14: AAA domain 98.2 3.5E-06 7.6E-11 72.5 7.3 112 2-133 11-127 (128)
51 KOG2120 SCF ubiquitin ligase, 98.2 3.5E-08 7.7E-13 92.0 -5.8 131 377-517 185-324 (419)
52 PLN03150 hypothetical protein; 98.2 3.2E-06 7E-11 93.2 8.3 106 331-436 419-529 (623)
53 COG3903 Predicted ATPase [Gene 98.2 1.9E-06 4.1E-11 85.3 5.1 222 1-233 22-252 (414)
54 KOG1909 Ran GTPase-activating 98.2 2.5E-07 5.4E-12 88.6 -1.0 40 351-390 89-133 (382)
55 cd01128 rho_factor Transcripti 98.2 4.1E-06 9E-11 80.2 7.0 83 1-84 24-115 (249)
56 PF13401 AAA_22: AAA domain; P 98.1 7E-06 1.5E-10 71.2 7.7 106 2-109 13-125 (131)
57 PF01637 Arch_ATPase: Archaeal 98.1 9.5E-06 2.1E-10 78.5 9.0 167 2-170 29-233 (234)
58 PF13855 LRR_8: Leucine rich r 98.1 3.1E-06 6.7E-11 61.9 4.2 57 354-410 1-60 (61)
59 PRK00080 ruvB Holliday junctio 98.1 0.0003 6.5E-09 71.5 18.9 161 1-174 59-225 (328)
60 KOG0531 Protein phosphatase 1, 98.1 7.3E-07 1.6E-11 93.8 -0.4 163 351-516 92-265 (414)
61 PRK09376 rho transcription ter 98.1 1E-05 2.2E-10 80.8 7.6 82 1-83 177-267 (416)
62 PRK13342 recombination factor 98.0 8.1E-05 1.8E-09 78.1 13.3 148 2-175 45-200 (413)
63 PRK14961 DNA polymerase III su 97.9 0.00018 3.8E-09 74.1 14.2 101 71-172 118-221 (363)
64 PRK05564 DNA polymerase III su 97.9 0.00015 3.4E-09 73.1 13.5 146 2-169 35-188 (313)
65 TIGR00635 ruvB Holliday juncti 97.9 0.00019 4E-09 72.5 14.2 161 1-174 38-204 (305)
66 TIGR03420 DnaA_homol_Hda DnaA 97.9 4.9E-05 1.1E-09 73.0 9.0 145 2-174 47-204 (226)
67 KOG3665 ZYG-1-like serine/thre 97.9 5.9E-06 1.3E-10 90.8 2.3 146 308-454 122-282 (699)
68 PRK14949 DNA polymerase III su 97.9 0.00013 2.8E-09 80.6 12.5 153 2-172 47-221 (944)
69 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.4E-10 53.2 3.5 37 355-391 2-38 (44)
70 PRK06645 DNA polymerase III su 97.8 0.00035 7.5E-09 74.1 14.1 99 71-170 127-228 (507)
71 PRK07003 DNA polymerase III su 97.8 0.00026 5.7E-09 76.7 13.2 147 2-166 47-215 (830)
72 TIGR00678 holB DNA polymerase 97.8 0.00033 7E-09 65.0 11.9 90 71-167 95-187 (188)
73 KOG2982 Uncharacterized conser 97.8 1.4E-05 3E-10 75.1 2.6 189 397-626 69-265 (418)
74 COG1474 CDC6 Cdc6-related prot 97.8 0.0016 3.4E-08 66.4 17.6 167 2-171 51-238 (366)
75 KOG3665 ZYG-1-like serine/thre 97.8 1.3E-05 2.8E-10 88.1 2.6 103 330-432 122-230 (699)
76 TIGR00767 rho transcription te 97.7 9.9E-05 2.1E-09 74.3 8.5 82 2-84 177-267 (415)
77 PRK14963 DNA polymerase III su 97.7 0.00056 1.2E-08 72.9 14.2 99 71-170 115-216 (504)
78 PRK12323 DNA polymerase III su 97.7 0.00034 7.4E-09 74.7 12.3 102 70-172 122-226 (700)
79 PRK15386 type III secretion pr 97.7 6E-05 1.3E-09 76.3 6.4 39 553-595 72-110 (426)
80 PRK08727 hypothetical protein; 97.7 0.00024 5.1E-09 68.2 10.0 139 2-168 50-201 (233)
81 KOG1859 Leucine-rich repeat pr 97.7 7E-07 1.5E-11 93.4 -7.8 105 353-459 186-291 (1096)
82 PRK14960 DNA polymerase III su 97.7 0.00048 1E-08 73.8 12.5 152 2-171 46-219 (702)
83 PRK14957 DNA polymerase III su 97.7 0.0008 1.7E-08 71.9 14.1 148 2-167 47-216 (546)
84 PRK15386 type III secretion pr 97.6 0.00012 2.6E-09 74.1 7.4 142 477-647 46-187 (426)
85 PRK07994 DNA polymerase III su 97.6 0.00042 9E-09 75.2 11.8 102 70-172 117-221 (647)
86 PRK09087 hypothetical protein; 97.6 0.00066 1.4E-08 64.5 11.6 112 75-189 90-221 (226)
87 PRK12402 replication factor C 97.6 0.00073 1.6E-08 69.4 12.8 167 2-170 45-225 (337)
88 PRK14087 dnaA chromosomal repl 97.6 0.00073 1.6E-08 71.2 12.7 160 2-175 150-323 (450)
89 PRK05642 DNA replication initi 97.6 0.0005 1.1E-08 65.9 10.1 144 2-173 54-210 (234)
90 KOG1859 Leucine-rich repeat pr 97.5 2.4E-06 5.2E-11 89.5 -6.7 125 307-434 163-291 (1096)
91 KOG0531 Protein phosphatase 1, 97.5 1.8E-05 3.9E-10 83.4 -0.6 171 306-496 93-268 (414)
92 PF00308 Bac_DnaA: Bacterial d 97.5 0.00031 6.8E-09 66.4 7.9 156 2-174 43-211 (219)
93 PTZ00112 origin recognition co 97.5 0.0013 2.9E-08 72.0 13.3 139 1-142 789-950 (1164)
94 PRK14956 DNA polymerase III su 97.5 0.0013 2.8E-08 68.5 12.8 101 70-171 119-222 (484)
95 PRK14964 DNA polymerase III su 97.5 0.0013 2.8E-08 69.3 12.9 151 2-170 44-216 (491)
96 PRK08084 DNA replication initi 97.5 0.00067 1.5E-08 65.1 10.1 144 2-173 54-211 (235)
97 KOG2982 Uncharacterized conser 97.5 6.2E-05 1.3E-09 70.9 2.6 178 328-516 69-259 (418)
98 PRK14962 DNA polymerase III su 97.5 0.0017 3.6E-08 68.7 13.6 154 2-173 45-221 (472)
99 PF14516 AAA_35: AAA-like doma 97.5 0.0037 8.1E-08 63.3 15.7 169 3-178 41-246 (331)
100 PLN03025 replication factor C 97.5 0.0011 2.4E-08 67.1 11.9 151 2-168 43-197 (319)
101 KOG2028 ATPase related to the 97.5 0.00076 1.6E-08 65.5 9.9 143 2-166 171-331 (554)
102 PF12799 LRR_4: Leucine Rich r 97.5 0.00015 3.3E-09 48.4 3.7 33 400-432 2-34 (44)
103 PRK14951 DNA polymerase III su 97.5 0.0017 3.6E-08 70.5 13.6 100 71-171 123-225 (618)
104 PRK14958 DNA polymerase III su 97.5 0.0012 2.7E-08 70.4 12.5 152 2-171 47-220 (509)
105 KOG4579 Leucine-rich repeat (L 97.5 9E-06 1.9E-10 67.4 -2.9 90 328-417 51-141 (177)
106 PRK13341 recombination factor 97.4 0.0011 2.3E-08 73.6 12.2 142 1-168 60-214 (725)
107 KOG1644 U2-associated snRNP A' 97.4 0.00019 4.1E-09 64.0 4.9 81 378-459 43-125 (233)
108 PRK14969 DNA polymerase III su 97.4 0.0013 2.8E-08 70.8 12.2 153 2-172 47-221 (527)
109 KOG1947 Leucine rich repeat pr 97.4 2.1E-05 4.5E-10 85.4 -1.6 109 351-459 185-307 (482)
110 cd00009 AAA The AAA+ (ATPases 97.4 0.00057 1.2E-08 60.4 8.0 96 2-111 28-131 (151)
111 PRK09112 DNA polymerase III su 97.4 0.0031 6.8E-08 64.0 13.6 99 70-171 139-240 (351)
112 KOG1644 U2-associated snRNP A' 97.4 0.00031 6.7E-09 62.6 5.3 99 310-408 44-149 (233)
113 PRK04195 replication factor C 97.4 0.0026 5.7E-08 68.2 13.6 150 2-174 48-205 (482)
114 PRK07471 DNA polymerase III su 97.3 0.0045 9.7E-08 63.3 14.2 96 71-171 140-238 (365)
115 PRK05896 DNA polymerase III su 97.3 0.0022 4.8E-08 68.7 12.2 99 72-171 119-220 (605)
116 PRK07940 DNA polymerase III su 97.3 0.0032 7E-08 64.9 12.9 94 71-170 116-212 (394)
117 TIGR01242 26Sp45 26S proteasom 97.3 0.0023 5E-08 66.1 11.9 142 2-165 165-328 (364)
118 TIGR02397 dnaX_nterm DNA polym 97.3 0.0047 1E-07 63.8 14.3 101 72-173 117-220 (355)
119 PRK00440 rfc replication facto 97.3 0.0044 9.6E-08 63.0 13.6 152 2-170 47-202 (319)
120 PRK04132 replication factor C 97.3 0.0062 1.3E-07 68.2 15.4 154 2-171 575-731 (846)
121 COG5238 RNA1 Ran GTPase-activa 97.3 0.00013 2.8E-09 67.8 2.0 196 394-619 87-312 (388)
122 PF05621 TniB: Bacterial TniB 97.3 0.0047 1E-07 59.9 12.5 167 2-168 70-258 (302)
123 PRK14959 DNA polymerase III su 97.2 0.0029 6.2E-08 68.3 12.1 104 71-175 118-225 (624)
124 PRK08691 DNA polymerase III su 97.2 0.0032 6.9E-08 68.4 11.9 101 71-172 118-221 (709)
125 PRK08903 DnaA regulatory inact 97.2 0.0023 5E-08 61.3 9.7 142 2-175 51-203 (227)
126 TIGR02903 spore_lon_C ATP-depe 97.2 0.0051 1.1E-07 67.6 13.3 112 61-174 282-398 (615)
127 TIGR00362 DnaA chromosomal rep 97.1 0.0049 1.1E-07 64.7 12.7 153 2-171 145-310 (405)
128 TIGR02880 cbbX_cfxQ probable R 97.1 0.0041 8.9E-08 61.5 11.3 125 2-142 67-209 (284)
129 KOG2123 Uncharacterized conser 97.1 2.5E-05 5.5E-10 72.7 -4.0 100 353-453 18-123 (388)
130 PF05496 RuvB_N: Holliday junc 97.1 0.0042 9.1E-08 57.4 10.1 74 102-176 152-226 (233)
131 PRK14950 DNA polymerase III su 97.1 0.0076 1.7E-07 66.1 14.0 103 71-174 119-224 (585)
132 PRK05707 DNA polymerase III su 97.1 0.0087 1.9E-07 60.2 13.3 95 72-171 106-203 (328)
133 KOG1947 Leucine rich repeat pr 97.1 4E-05 8.6E-10 83.1 -3.7 235 397-673 186-439 (482)
134 PRK07764 DNA polymerase III su 97.1 0.0061 1.3E-07 68.8 13.2 100 71-171 119-221 (824)
135 PRK07133 DNA polymerase III su 97.1 0.008 1.7E-07 66.0 13.5 102 71-173 117-221 (725)
136 PRK09111 DNA polymerase III su 97.1 0.007 1.5E-07 65.8 13.1 101 71-172 131-234 (598)
137 PRK14088 dnaA chromosomal repl 97.1 0.0081 1.8E-07 63.4 13.2 173 2-190 139-332 (440)
138 KOG2543 Origin recognition com 97.1 0.012 2.5E-07 58.2 13.0 135 2-141 39-193 (438)
139 PRK14953 DNA polymerase III su 97.0 0.011 2.3E-07 63.0 13.9 101 71-172 118-221 (486)
140 CHL00181 cbbX CbbX; Provisiona 97.0 0.0094 2E-07 58.9 12.6 125 2-142 68-210 (287)
141 PRK00149 dnaA chromosomal repl 97.0 0.0057 1.2E-07 65.1 11.7 172 2-190 157-349 (450)
142 KOG2123 Uncharacterized conser 97.0 5.8E-05 1.3E-09 70.4 -2.9 97 329-428 18-123 (388)
143 PRK14955 DNA polymerase III su 97.0 0.0044 9.5E-08 64.7 10.5 101 71-172 126-229 (397)
144 PRK14952 DNA polymerase III su 97.0 0.011 2.4E-07 64.0 13.5 99 71-170 117-218 (584)
145 PRK08451 DNA polymerase III su 97.0 0.015 3.3E-07 62.0 14.1 101 71-172 116-219 (535)
146 PF00004 AAA: ATPase family as 96.9 0.003 6.4E-08 54.6 7.4 63 2-84 7-70 (132)
147 PRK14971 DNA polymerase III su 96.9 0.014 3E-07 64.0 14.0 99 72-171 121-222 (614)
148 COG3899 Predicted ATPase [Gene 96.9 0.0053 1.2E-07 70.0 11.1 154 69-232 151-320 (849)
149 KOG4579 Leucine-rich repeat (L 96.9 7.5E-05 1.6E-09 62.0 -2.6 102 355-458 28-134 (177)
150 PRK14948 DNA polymerase III su 96.9 0.015 3.3E-07 63.7 14.0 103 71-174 120-225 (620)
151 TIGR02881 spore_V_K stage V sp 96.9 0.0051 1.1E-07 60.2 9.5 125 2-142 51-192 (261)
152 PRK11331 5-methylcytosine-spec 96.9 0.0016 3.5E-08 67.0 5.8 80 1-84 202-284 (459)
153 KOG2227 Pre-initiation complex 96.8 0.047 1E-06 55.6 15.6 175 2-176 184-373 (529)
154 PRK14954 DNA polymerase III su 96.8 0.019 4.1E-07 62.7 13.3 97 71-168 126-225 (620)
155 PRK03992 proteasome-activating 96.8 0.013 2.8E-07 60.9 11.7 141 2-164 174-336 (389)
156 PRK06620 hypothetical protein; 96.7 0.0067 1.5E-07 57.1 8.5 94 73-169 86-187 (214)
157 smart00382 AAA ATPases associa 96.7 0.0049 1.1E-07 53.8 7.2 82 2-86 11-92 (148)
158 PRK14970 DNA polymerase III su 96.7 0.029 6.4E-07 58.1 13.5 98 72-170 108-208 (367)
159 COG1373 Predicted ATPase (AAA+ 96.7 0.009 1.9E-07 62.1 9.5 112 2-136 46-162 (398)
160 PRK12608 transcription termina 96.6 0.012 2.6E-07 59.2 9.9 81 2-83 142-231 (380)
161 TIGR03689 pup_AAA proteasome A 96.6 0.038 8.3E-07 58.7 13.6 129 2-143 225-380 (512)
162 KOG2739 Leucine-rich acidic nu 96.6 0.0011 2.3E-08 61.9 1.9 61 351-411 62-128 (260)
163 PRK14086 dnaA chromosomal repl 96.6 0.027 5.9E-07 60.7 12.6 157 2-175 323-492 (617)
164 PRK06305 DNA polymerase III su 96.5 0.034 7.3E-07 58.8 13.0 100 71-171 120-222 (451)
165 PHA02544 44 clamp loader, smal 96.5 0.016 3.4E-07 58.8 10.3 114 2-138 52-170 (316)
166 PRK06647 DNA polymerase III su 96.5 0.045 9.8E-07 59.4 14.1 101 71-172 118-221 (563)
167 PRK07399 DNA polymerase III su 96.5 0.063 1.4E-06 53.8 14.0 98 71-172 123-222 (314)
168 PRK12422 chromosomal replicati 96.5 0.039 8.4E-07 58.1 12.9 145 2-165 150-307 (445)
169 COG3267 ExeA Type II secretory 96.5 0.16 3.4E-06 47.8 15.1 168 2-173 60-247 (269)
170 PRK08116 hypothetical protein; 96.4 0.0092 2E-07 58.4 7.4 94 2-110 123-221 (268)
171 KOG3864 Uncharacterized conser 96.4 0.00082 1.8E-08 60.1 -0.1 91 530-626 102-192 (221)
172 PRK05563 DNA polymerase III su 96.4 0.072 1.6E-06 58.0 14.5 100 71-171 118-220 (559)
173 PRK06090 DNA polymerase III su 96.3 0.16 3.5E-06 50.7 15.4 109 71-191 107-218 (319)
174 CHL00176 ftsH cell division pr 96.3 0.072 1.6E-06 58.6 14.0 140 2-163 225-386 (638)
175 PRK08769 DNA polymerase III su 96.3 0.07 1.5E-06 53.3 12.8 93 71-170 112-207 (319)
176 PF04665 Pox_A32: Poxvirus A32 96.3 0.01 2.3E-07 56.0 6.5 28 2-31 22-49 (241)
177 PRK14965 DNA polymerase III su 96.2 0.044 9.5E-07 60.0 12.1 97 71-168 118-217 (576)
178 PTZ00454 26S protease regulato 96.2 0.067 1.4E-06 55.5 12.6 142 2-165 188-351 (398)
179 KOG2739 Leucine-rich acidic nu 96.1 0.0042 9.1E-08 58.1 3.1 58 375-432 63-126 (260)
180 COG1222 RPT1 ATP-dependent 26S 96.1 0.1 2.2E-06 51.5 12.2 151 2-176 194-372 (406)
181 PRK08118 topology modulation p 96.0 0.0035 7.5E-08 56.6 2.0 28 1-28 9-37 (167)
182 PRK06871 DNA polymerase III su 96.0 0.11 2.4E-06 52.0 12.7 92 71-168 106-200 (325)
183 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.029 6.4E-07 49.4 7.7 108 2-112 11-140 (159)
184 TIGR03345 VI_ClpV1 type VI sec 96.0 0.044 9.5E-07 62.8 11.0 146 2-163 217-388 (852)
185 PTZ00361 26 proteosome regulat 96.0 0.023 4.9E-07 59.3 7.9 142 2-165 226-389 (438)
186 KOG0989 Replication factor C, 95.9 0.045 9.9E-07 52.6 9.1 153 2-167 66-226 (346)
187 CHL00195 ycf46 Ycf46; Provisio 95.9 0.052 1.1E-06 57.7 10.4 144 2-165 268-429 (489)
188 KOG3864 Uncharacterized conser 95.8 0.0021 4.5E-08 57.6 -0.3 71 576-653 122-192 (221)
189 PF05673 DUF815: Protein of un 95.8 0.32 6.8E-06 45.9 13.8 85 2-112 61-152 (249)
190 TIGR01241 FtsH_fam ATP-depende 95.8 0.12 2.6E-06 55.8 12.8 148 2-171 97-267 (495)
191 PF13191 AAA_16: AAA ATPase do 95.7 0.026 5.5E-07 52.1 6.6 45 2-48 33-82 (185)
192 TIGR02640 gas_vesic_GvpN gas v 95.7 0.11 2.4E-06 50.8 11.1 35 2-41 30-64 (262)
193 PTZ00202 tuzin; Provisional 95.6 0.059 1.3E-06 55.0 8.8 131 1-141 294-434 (550)
194 PRK07261 topology modulation p 95.6 0.039 8.4E-07 50.0 6.9 28 1-28 8-36 (171)
195 cd01133 F1-ATPase_beta F1 ATP 95.5 0.09 2E-06 50.9 9.3 81 2-84 78-175 (274)
196 COG2812 DnaX DNA polymerase II 95.4 0.079 1.7E-06 56.0 9.4 115 60-175 103-224 (515)
197 PRK08181 transposase; Validate 95.4 0.027 5.8E-07 54.8 5.5 65 2-84 115-179 (269)
198 TIGR02237 recomb_radB DNA repa 95.3 0.065 1.4E-06 50.5 7.9 38 2-42 21-58 (209)
199 PRK08058 DNA polymerase III su 95.3 0.25 5.3E-06 50.2 12.3 70 71-140 109-181 (329)
200 PF00560 LRR_1: Leucine Rich R 95.1 0.0099 2.2E-07 32.8 0.9 21 355-375 1-21 (22)
201 PF08423 Rad51: Rad51; InterP 95.1 0.14 3E-06 49.7 9.4 48 2-50 47-98 (256)
202 PF13177 DNA_pol3_delta2: DNA 95.0 0.12 2.7E-06 46.2 8.2 111 2-129 28-162 (162)
203 PF01695 IstB_IS21: IstB-like 95.0 0.018 4E-07 52.4 2.9 65 2-84 56-120 (178)
204 cd01123 Rad51_DMC1_radA Rad51_ 95.0 0.11 2.4E-06 50.0 8.5 80 2-82 28-125 (235)
205 PRK06964 DNA polymerase III su 94.9 0.55 1.2E-05 47.5 13.5 92 71-171 131-225 (342)
206 TIGR02639 ClpA ATP-dependent C 94.9 0.16 3.4E-06 57.7 10.7 125 2-141 212-358 (731)
207 CHL00095 clpC Clp protease ATP 94.9 0.21 4.5E-06 57.5 11.7 125 2-140 209-353 (821)
208 PF00560 LRR_1: Leucine Rich R 94.9 0.012 2.6E-07 32.5 0.8 21 400-420 1-21 (22)
209 PF13306 LRR_5: Leucine rich r 94.7 0.1 2.2E-06 44.7 6.9 98 328-430 10-111 (129)
210 TIGR00602 rad24 checkpoint pro 94.7 0.093 2E-06 57.4 7.8 47 120-166 266-318 (637)
211 TIGR03346 chaperone_ClpB ATP-d 94.7 0.3 6.5E-06 56.5 12.3 76 2-84 604-679 (852)
212 COG2884 FtsE Predicted ATPase 94.6 0.11 2.4E-06 46.4 6.7 51 64-115 148-202 (223)
213 PRK06526 transposase; Provisio 94.6 0.032 6.9E-07 54.0 3.7 65 2-84 107-171 (254)
214 PRK07993 DNA polymerase III su 94.6 0.6 1.3E-05 47.3 12.8 92 71-168 107-201 (334)
215 PRK10536 hypothetical protein; 94.5 0.1 2.2E-06 49.8 6.5 36 74-112 178-215 (262)
216 TIGR02639 ClpA ATP-dependent C 94.4 0.22 4.8E-06 56.5 10.4 73 2-84 493-565 (731)
217 TIGR01243 CDC48 AAA family ATP 94.4 0.35 7.6E-06 55.1 12.0 142 2-165 496-657 (733)
218 PRK08939 primosomal protein Dn 94.4 0.076 1.6E-06 53.0 5.9 89 2-108 165-259 (306)
219 PRK04296 thymidine kinase; Pro 94.4 0.044 9.5E-07 50.6 4.0 104 2-112 11-118 (190)
220 KOG0743 AAA+-type ATPase [Post 94.4 1.2 2.7E-05 45.6 14.2 146 1-178 243-417 (457)
221 KOG1969 DNA replication checkp 94.3 0.094 2E-06 56.4 6.5 66 1-84 334-399 (877)
222 KOG0730 AAA+-type ATPase [Post 94.3 0.47 1E-05 50.8 11.5 115 1-142 476-616 (693)
223 PRK05541 adenylylsulfate kinas 94.3 0.11 2.4E-06 47.4 6.4 28 1-30 15-42 (176)
224 TIGR03345 VI_ClpV1 type VI sec 94.3 0.27 5.9E-06 56.5 10.7 76 2-84 605-680 (852)
225 PRK10865 protein disaggregatio 94.3 0.38 8.2E-06 55.4 11.9 76 2-84 607-682 (857)
226 PRK07132 DNA polymerase III su 94.3 0.92 2E-05 45.0 13.0 139 2-163 27-177 (299)
227 COG2255 RuvB Holliday junction 94.2 0.95 2.1E-05 43.4 12.2 72 104-176 156-228 (332)
228 TIGR02238 recomb_DMC1 meiotic 94.2 0.19 4.2E-06 50.2 8.3 80 2-82 105-201 (313)
229 COG1066 Sms Predicted ATP-depe 94.2 0.21 4.5E-06 50.4 8.2 77 2-84 102-180 (456)
230 PLN03187 meiotic recombination 94.2 0.22 4.7E-06 50.3 8.6 49 2-51 135-187 (344)
231 cd01393 recA_like RecA is a b 94.2 0.23 5E-06 47.4 8.6 45 2-47 28-76 (226)
232 PRK09183 transposase/IS protei 94.1 0.12 2.6E-06 50.3 6.4 65 2-83 111-175 (259)
233 COG0593 DnaA ATPase involved i 94.1 0.4 8.6E-06 49.2 10.2 143 2-164 122-279 (408)
234 PF00448 SRP54: SRP54-type pro 94.0 0.3 6.5E-06 45.2 8.5 79 2-82 10-93 (196)
235 COG1223 Predicted ATPase (AAA+ 94.0 0.4 8.7E-06 45.1 9.0 142 2-165 160-319 (368)
236 PRK12377 putative replication 93.9 0.12 2.5E-06 49.8 5.9 65 2-83 110-174 (248)
237 PRK09361 radB DNA repair and r 93.9 0.2 4.4E-06 47.8 7.6 36 2-40 32-67 (225)
238 COG0470 HolB ATPase involved i 93.9 0.19 4.1E-06 51.2 7.8 110 2-127 33-167 (325)
239 PRK08699 DNA polymerase III su 93.7 0.66 1.4E-05 46.8 11.1 87 72-167 113-202 (325)
240 TIGR02012 tigrfam_recA protein 93.7 0.24 5.3E-06 49.4 7.9 74 2-82 64-143 (321)
241 PF07693 KAP_NTPase: KAP famil 93.7 1.8 3.8E-05 44.0 14.6 46 3-48 30-80 (325)
242 cd01394 radB RadB. The archaea 93.6 0.24 5.2E-06 47.0 7.6 40 2-45 28-67 (218)
243 PRK07276 DNA polymerase III su 93.6 1.2 2.6E-05 43.9 12.3 67 71-138 103-172 (290)
244 COG2607 Predicted ATPase (AAA+ 93.6 0.25 5.3E-06 46.0 6.9 86 2-113 94-186 (287)
245 KOG0735 AAA+-type ATPase [Post 93.5 0.2 4.4E-06 53.8 7.1 151 2-171 440-616 (952)
246 cd01120 RecA-like_NTPases RecA 93.5 0.53 1.1E-05 42.0 9.3 32 2-35 8-39 (165)
247 PRK07952 DNA replication prote 93.5 0.27 5.8E-06 47.2 7.4 67 2-84 108-174 (244)
248 KOG0741 AAA+-type ATPase [Post 93.4 1.6 3.5E-05 45.6 12.9 148 2-176 547-717 (744)
249 cd00983 recA RecA is a bacter 93.4 0.3 6.4E-06 48.8 7.8 74 2-82 64-143 (325)
250 PRK14722 flhF flagellar biosyn 93.3 0.31 6.7E-06 49.7 8.0 80 2-83 146-226 (374)
251 TIGR02236 recomb_radA DNA repa 93.3 0.41 8.9E-06 48.3 9.0 49 2-51 104-156 (310)
252 PLN03186 DNA repair protein RA 93.3 0.31 6.8E-06 49.3 7.9 49 2-51 132-184 (342)
253 PRK09354 recA recombinase A; P 93.3 0.34 7.3E-06 48.8 8.0 74 2-82 69-148 (349)
254 PHA00729 NTP-binding motif con 93.2 0.24 5.1E-06 46.5 6.4 17 2-18 26-42 (226)
255 PRK11034 clpA ATP-dependent Cl 93.2 0.29 6.2E-06 55.1 8.2 127 2-141 216-362 (758)
256 cd01121 Sms Sms (bacterial rad 93.0 0.34 7.3E-06 49.8 7.8 76 2-82 91-168 (372)
257 TIGR03346 chaperone_ClpB ATP-d 93.0 0.63 1.4E-05 53.9 10.9 125 2-141 203-349 (852)
258 COG5238 RNA1 Ran GTPase-activa 92.9 0.24 5.3E-06 46.8 5.9 160 327-494 89-283 (388)
259 KOG1532 GTPase XAB1, interacts 92.9 0.41 8.9E-06 45.3 7.3 52 1-52 27-87 (366)
260 PRK06835 DNA replication prote 92.8 0.13 2.9E-06 51.6 4.6 92 2-109 192-288 (329)
261 PRK06921 hypothetical protein; 92.8 0.39 8.5E-06 46.9 7.7 61 2-81 126-186 (266)
262 PF13504 LRR_7: Leucine rich r 92.8 0.067 1.5E-06 27.3 1.2 16 400-415 2-17 (17)
263 TIGR01243 CDC48 AAA family ATP 92.8 0.6 1.3E-05 53.2 10.2 142 2-165 221-381 (733)
264 PRK10733 hflB ATP-dependent me 92.7 0.72 1.6E-05 51.4 10.5 141 2-164 194-356 (644)
265 KOG1514 Origin recognition com 92.7 1.6 3.6E-05 47.2 12.3 163 2-170 431-620 (767)
266 TIGR02239 recomb_RAD51 DNA rep 92.6 0.47 1E-05 47.7 8.1 49 2-51 105-157 (316)
267 PRK10865 protein disaggregatio 92.6 1 2.2E-05 52.1 11.8 126 2-141 208-354 (857)
268 PRK04301 radA DNA repair and r 92.6 0.64 1.4E-05 47.0 9.1 48 2-50 111-162 (317)
269 cd01135 V_A-ATPase_B V/A-type 92.6 0.77 1.7E-05 44.5 9.1 83 2-84 78-178 (276)
270 COG0468 RecA RecA/RadA recombi 92.6 0.57 1.2E-05 45.7 8.2 79 2-82 69-151 (279)
271 KOG0729 26S proteasome regulat 92.5 0.3 6.5E-06 45.8 6.0 61 2-82 220-280 (435)
272 KOG0731 AAA+-type ATPase conta 92.5 1 2.2E-05 49.7 10.8 146 1-167 352-520 (774)
273 COG1484 DnaC DNA replication p 92.4 0.39 8.4E-06 46.6 7.0 66 2-84 114-179 (254)
274 PRK08533 flagellar accessory p 92.4 0.69 1.5E-05 44.2 8.6 43 2-49 33-75 (230)
275 PF00006 ATP-synt_ab: ATP synt 92.3 0.43 9.3E-06 44.7 6.9 77 2-82 24-115 (215)
276 PF13504 LRR_7: Leucine rich r 92.3 0.089 1.9E-06 26.9 1.3 16 355-370 2-17 (17)
277 TIGR02858 spore_III_AA stage I 92.2 0.38 8.2E-06 46.9 6.7 104 2-112 120-231 (270)
278 KOG0733 Nuclear AAA ATPase (VC 92.1 2.9 6.2E-05 44.6 12.9 121 2-142 554-693 (802)
279 PF13207 AAA_17: AAA domain; P 92.0 0.11 2.3E-06 43.9 2.4 18 1-18 7-24 (121)
280 cd03115 SRP The signal recogni 92.0 0.77 1.7E-05 41.7 8.2 81 1-83 8-93 (173)
281 PTZ00035 Rad51 protein; Provis 91.8 0.88 1.9E-05 46.1 9.0 49 2-51 127-179 (337)
282 CHL00095 clpC Clp protease ATP 91.8 0.31 6.7E-06 56.1 6.5 76 2-84 548-623 (821)
283 PF13306 LRR_5: Leucine rich r 91.8 0.42 9.1E-06 40.8 5.9 106 345-456 3-112 (129)
284 TIGR00763 lon ATP-dependent pr 91.7 1.3 2.9E-05 50.6 11.4 19 2-20 356-374 (775)
285 TIGR00708 cobA cob(I)alamin ad 91.7 0.77 1.7E-05 41.1 7.4 107 2-112 14-142 (173)
286 TIGR03499 FlhF flagellar biosy 91.5 0.86 1.9E-05 45.1 8.4 78 2-81 203-281 (282)
287 TIGR03305 alt_F1F0_F1_bet alte 91.4 0.6 1.3E-05 48.7 7.4 82 2-84 147-244 (449)
288 PRK12597 F0F1 ATP synthase sub 91.2 0.99 2.2E-05 47.4 8.8 81 2-83 152-248 (461)
289 TIGR03877 thermo_KaiC_1 KaiC d 91.2 1.2 2.7E-05 42.8 9.0 39 2-44 30-68 (237)
290 PF13481 AAA_25: AAA domain; P 91.2 0.7 1.5E-05 42.8 7.2 33 2-34 41-81 (193)
291 PRK12727 flagellar biosynthesi 91.0 0.76 1.7E-05 48.8 7.7 79 2-82 359-438 (559)
292 cd01124 KaiC KaiC is a circadi 90.9 0.99 2.1E-05 41.5 7.9 38 2-43 8-45 (187)
293 PRK11889 flhF flagellar biosyn 90.5 1.4 3.1E-05 45.0 8.8 80 2-83 250-331 (436)
294 PRK12723 flagellar biosynthesi 90.3 1.2 2.6E-05 45.9 8.3 80 2-83 183-265 (388)
295 COG0464 SpoVK ATPases of the A 90.3 1.4 3.1E-05 47.7 9.5 123 1-143 284-425 (494)
296 cd00544 CobU Adenosylcobinamid 90.2 1.1 2.4E-05 40.3 7.2 74 2-81 8-82 (169)
297 COG4608 AppF ABC-type oligopep 90.2 1 2.3E-05 43.0 7.2 109 2-114 48-174 (268)
298 PRK13849 putative crown gall t 90.2 1.3 2.8E-05 42.2 8.1 37 2-40 11-47 (231)
299 PF01583 APS_kinase: Adenylyls 90.2 0.38 8.2E-06 42.3 4.0 29 1-31 10-38 (156)
300 PRK06217 hypothetical protein; 90.2 0.95 2.1E-05 41.5 7.0 28 1-29 9-38 (183)
301 KOG0744 AAA+-type ATPase [Post 90.2 2.1 4.6E-05 41.8 9.2 20 1-20 185-204 (423)
302 PF13238 AAA_18: AAA domain; P 90.1 0.21 4.5E-06 42.6 2.4 17 1-17 6-22 (129)
303 PRK11823 DNA repair protein Ra 90.0 0.73 1.6E-05 48.8 6.7 76 2-82 89-166 (446)
304 PRK09280 F0F1 ATP synthase sub 90.0 1.1 2.4E-05 46.9 7.9 81 2-83 153-249 (463)
305 TIGR01040 V-ATPase_V1_B V-type 89.9 1 2.2E-05 46.9 7.5 81 2-83 150-258 (466)
306 PF00154 RecA: recA bacterial 89.9 2.4 5.1E-05 42.3 9.7 76 2-84 62-143 (322)
307 PRK12726 flagellar biosynthesi 89.8 1.8 3.9E-05 44.1 8.9 80 2-83 215-296 (407)
308 cd01131 PilT Pilus retraction 89.8 0.38 8.2E-06 44.8 4.0 99 2-112 10-111 (198)
309 PRK06067 flagellar accessory p 89.7 1.6 3.5E-05 41.8 8.4 39 2-44 34-72 (234)
310 PF07724 AAA_2: AAA domain (Cd 89.7 0.22 4.7E-06 45.0 2.2 33 2-36 12-45 (171)
311 COG0541 Ffh Signal recognition 89.7 1.9 4.1E-05 44.1 8.9 48 2-51 109-157 (451)
312 COG4088 Predicted nucleotide k 89.7 0.21 4.5E-06 45.2 2.0 20 1-20 9-28 (261)
313 PRK04328 hypothetical protein; 89.6 1.6 3.5E-05 42.2 8.4 43 2-49 32-74 (249)
314 cd02025 PanK Pantothenate kina 89.5 1.8 3.9E-05 41.0 8.4 18 2-19 8-25 (220)
315 PF07728 AAA_5: AAA domain (dy 89.5 0.61 1.3E-05 40.5 4.9 70 2-84 8-77 (139)
316 TIGR01041 ATP_syn_B_arch ATP s 89.5 1.4 3.1E-05 46.3 8.2 83 2-84 150-250 (458)
317 TIGR00959 ffh signal recogniti 89.5 1.9 4.2E-05 45.1 9.2 81 1-82 107-192 (428)
318 COG1618 Predicted nucleotide k 89.5 0.27 5.9E-06 42.7 2.4 21 1-21 13-33 (179)
319 TIGR00064 ftsY signal recognit 89.4 2.2 4.8E-05 41.9 9.1 80 1-82 80-164 (272)
320 PRK12724 flagellar biosynthesi 89.3 1.2 2.5E-05 46.1 7.3 76 2-81 232-308 (432)
321 COG1102 Cmk Cytidylate kinase 89.3 0.46 1E-05 41.4 3.7 39 1-52 8-46 (179)
322 COG0563 Adk Adenylate kinase a 89.2 0.58 1.3E-05 42.5 4.6 17 2-18 9-25 (178)
323 KOG0733 Nuclear AAA ATPase (VC 89.2 0.69 1.5E-05 49.0 5.6 61 2-82 232-292 (802)
324 TIGR01359 UMP_CMP_kin_fam UMP- 89.1 1.5 3.3E-05 40.1 7.5 18 1-18 7-24 (183)
325 COG1157 FliI Flagellar biosynt 89.1 2 4.3E-05 43.7 8.5 77 2-82 172-263 (441)
326 PRK11034 clpA ATP-dependent Cl 89.0 0.55 1.2E-05 53.0 5.1 73 2-84 497-569 (758)
327 PRK09519 recA DNA recombinatio 89.0 1.4 3.1E-05 49.3 8.2 74 2-82 69-148 (790)
328 cd03247 ABCC_cytochrome_bd The 88.9 1.2 2.6E-05 40.6 6.5 17 2-18 37-53 (178)
329 PRK00771 signal recognition pa 88.8 1.5 3.3E-05 45.9 8.0 78 1-82 103-185 (437)
330 cd01132 F1_ATPase_alpha F1 ATP 88.8 1.7 3.6E-05 42.2 7.6 79 2-84 78-173 (274)
331 cd03214 ABC_Iron-Siderophores_ 88.8 1.4 2.9E-05 40.4 6.8 107 2-113 34-161 (180)
332 PRK08972 fliI flagellum-specif 88.8 1.2 2.6E-05 46.3 7.0 79 2-84 171-264 (444)
333 TIGR00416 sms DNA repair prote 88.7 1.2 2.6E-05 47.2 7.3 76 2-82 103-180 (454)
334 PRK14974 cell division protein 88.7 2.1 4.5E-05 43.3 8.5 82 1-84 148-234 (336)
335 TIGR01039 atpD ATP synthase, F 88.6 1.6 3.6E-05 45.6 7.9 82 2-84 152-249 (461)
336 KOG0736 Peroxisome assembly fa 88.6 6.4 0.00014 43.4 12.3 62 2-83 714-775 (953)
337 COG0194 Gmk Guanylate kinase [ 88.6 1.4 3E-05 39.6 6.3 16 2-17 13-28 (191)
338 COG0529 CysC Adenylylsulfate k 88.6 0.69 1.5E-05 41.0 4.3 20 1-20 31-50 (197)
339 PRK05986 cob(I)alamin adenolsy 88.5 1.7 3.6E-05 39.7 7.0 109 2-112 31-160 (191)
340 TIGR02655 circ_KaiC circadian 88.5 1.8 4E-05 46.5 8.6 76 2-82 272-363 (484)
341 cd00046 DEXDc DEAD-like helica 88.5 1.1 2.3E-05 38.5 5.8 46 2-48 9-54 (144)
342 COG0542 clpA ATP-binding subun 88.5 0.64 1.4E-05 51.7 5.1 76 1-84 529-605 (786)
343 PRK05703 flhF flagellar biosyn 88.4 1.9 4.1E-05 45.3 8.4 78 2-82 230-309 (424)
344 PF08303 tRNA_lig_kinase: tRNA 88.4 0.6 1.3E-05 41.0 3.8 43 2-48 8-50 (168)
345 TIGR03575 selen_PSTK_euk L-ser 88.3 1.3 2.8E-05 44.7 6.7 19 1-19 7-25 (340)
346 PF07726 AAA_3: ATPase family 88.3 0.24 5.1E-06 41.6 1.3 22 2-25 8-29 (131)
347 PRK10867 signal recognition pa 88.2 2.2 4.8E-05 44.7 8.6 50 1-51 108-158 (433)
348 PTZ00185 ATPase alpha subunit; 88.0 3.6 7.8E-05 43.5 9.8 83 2-84 198-301 (574)
349 COG1428 Deoxynucleoside kinase 88.0 0.77 1.7E-05 42.1 4.4 41 1-46 12-52 (216)
350 TIGR03574 selen_PSTK L-seryl-t 87.9 1.5 3.3E-05 42.5 7.0 20 1-20 7-26 (249)
351 PRK08927 fliI flagellum-specif 87.7 3 6.5E-05 43.6 9.1 79 2-84 167-260 (442)
352 PRK04196 V-type ATP synthase s 87.7 1.7 3.7E-05 45.9 7.4 81 2-83 152-251 (460)
353 cd02037 MRP-like MRP (Multiple 87.6 1.7 3.6E-05 39.2 6.6 29 2-32 9-37 (169)
354 PLN00020 ribulose bisphosphate 87.5 1.7 3.6E-05 43.9 6.8 19 2-20 157-175 (413)
355 COG3598 RepA RecA-family ATPas 87.5 1.8 4E-05 42.2 6.8 51 2-52 98-157 (402)
356 PRK10787 DNA-binding ATP-depen 87.4 2.3 5E-05 48.5 8.8 128 2-141 358-506 (784)
357 KOG3347 Predicted nucleotide k 87.4 0.4 8.6E-06 41.0 2.1 27 2-35 16-42 (176)
358 PF01656 CbiA: CobQ/CobB/MinD/ 87.3 0.95 2.1E-05 41.9 5.0 32 2-35 8-39 (195)
359 CHL00060 atpB ATP synthase CF1 87.3 2.1 4.5E-05 45.2 7.7 82 2-84 170-274 (494)
360 PF13604 AAA_30: AAA domain; P 87.2 0.51 1.1E-05 43.8 3.0 98 2-112 27-133 (196)
361 COG0542 clpA ATP-binding subun 87.2 2.5 5.5E-05 47.1 8.6 127 2-141 200-346 (786)
362 PRK03839 putative kinase; Prov 87.2 0.41 8.9E-06 43.8 2.3 19 1-19 8-26 (180)
363 CHL00206 ycf2 Ycf2; Provisiona 87.1 6.1 0.00013 48.5 12.1 19 2-20 1639-1657(2281)
364 TIGR03324 alt_F1F0_F1_al alter 87.0 2.9 6.2E-05 44.3 8.6 79 2-84 171-266 (497)
365 PF08433 KTI12: Chromatin asso 87.0 1.4 3E-05 43.1 6.0 20 1-20 9-28 (270)
366 cd02027 APSK Adenosine 5'-phos 87.0 4.3 9.3E-05 35.7 8.6 18 2-19 8-25 (149)
367 COG1121 ZnuC ABC-type Mn/Zn tr 86.8 1.2 2.6E-05 42.5 5.2 73 39-113 118-202 (254)
368 PRK09099 type III secretion sy 86.8 2.4 5.3E-05 44.4 7.9 80 2-84 172-265 (441)
369 PRK12678 transcription termina 86.7 2.3 4.9E-05 45.6 7.5 82 2-84 425-515 (672)
370 COG1192 Soj ATPases involved i 86.7 0.79 1.7E-05 44.8 4.2 32 2-34 12-43 (259)
371 cd01122 GP4d_helicase GP4d_hel 86.7 3.4 7.4E-05 40.6 8.7 43 2-47 39-81 (271)
372 cd01125 repA Hexameric Replica 86.7 3.4 7.3E-05 39.8 8.5 19 1-19 9-27 (239)
373 PRK00889 adenylylsulfate kinas 86.6 1.9 4.2E-05 39.1 6.5 20 1-20 12-31 (175)
374 cd03223 ABCD_peroxisomal_ALDP 86.6 3 6.5E-05 37.5 7.6 17 2-18 36-52 (166)
375 PTZ00088 adenylate kinase 1; P 86.5 0.73 1.6E-05 43.8 3.7 18 1-18 14-31 (229)
376 COG3640 CooC CO dehydrogenase 86.4 1.1 2.3E-05 41.8 4.5 44 2-53 9-52 (255)
377 TIGR01425 SRP54_euk signal rec 86.3 3.3 7.2E-05 43.2 8.5 49 1-51 108-157 (429)
378 PRK00625 shikimate kinase; Pro 86.3 0.5 1.1E-05 42.7 2.3 18 1-18 8-25 (173)
379 smart00367 LRR_CC Leucine-rich 86.3 0.34 7.4E-06 27.9 0.8 18 636-653 1-18 (26)
380 COG0003 ArsA Predicted ATPase 86.2 0.95 2.1E-05 45.2 4.4 41 1-43 10-50 (322)
381 PRK08149 ATP synthase SpaL; Va 86.2 3.2 7E-05 43.3 8.4 79 2-84 160-253 (428)
382 PHA02518 ParA-like protein; Pr 86.2 1.2 2.6E-05 41.8 5.1 36 2-39 10-45 (211)
383 PRK05917 DNA polymerase III su 86.2 8.6 0.00019 37.9 10.9 58 71-128 94-154 (290)
384 PF00485 PRK: Phosphoribulokin 86.1 3.7 7.9E-05 38.0 8.1 74 2-76 8-87 (194)
385 PRK06936 type III secretion sy 86.0 3.4 7.3E-05 43.2 8.4 79 2-84 171-264 (439)
386 TIGR01069 mutS2 MutS2 family p 86.0 1.3 2.8E-05 50.4 5.9 113 71-192 401-522 (771)
387 PRK06002 fliI flagellum-specif 86.0 2.9 6.3E-05 43.7 7.9 80 2-84 174-266 (450)
388 smart00370 LRR Leucine-rich re 85.9 0.64 1.4E-05 26.7 1.9 20 398-417 1-20 (26)
389 smart00369 LRR_TYP Leucine-ric 85.9 0.64 1.4E-05 26.7 1.9 20 398-417 1-20 (26)
390 cd02019 NK Nucleoside/nucleoti 85.9 0.59 1.3E-05 34.8 2.2 16 2-17 8-23 (69)
391 PRK06793 fliI flagellum-specif 85.8 2.1 4.5E-05 44.7 6.8 80 2-84 165-258 (432)
392 KOG0991 Replication factor C, 85.7 1.3 2.8E-05 41.1 4.5 70 1-84 56-125 (333)
393 PRK14721 flhF flagellar biosyn 85.7 4.4 9.6E-05 42.2 9.1 78 2-81 200-278 (420)
394 TIGR02902 spore_lonB ATP-depen 85.6 1.7 3.8E-05 47.2 6.5 22 121-142 256-277 (531)
395 KOG1051 Chaperone HSP104 and r 85.6 1.8 3.9E-05 49.0 6.6 74 2-85 600-673 (898)
396 cd02042 ParA ParA and ParB of 85.5 0.66 1.4E-05 37.9 2.5 18 2-19 9-26 (104)
397 PRK14723 flhF flagellar biosyn 85.5 3.3 7.3E-05 46.3 8.5 79 2-82 194-273 (767)
398 COG3854 SpoIIIAA ncharacterize 85.3 1.7 3.6E-05 40.4 5.0 99 2-112 146-255 (308)
399 PRK06762 hypothetical protein; 85.2 0.61 1.3E-05 42.0 2.4 17 1-17 10-26 (166)
400 PRK06995 flhF flagellar biosyn 85.0 3.8 8.2E-05 43.5 8.3 79 2-82 265-344 (484)
401 PF12775 AAA_7: P-loop contain 84.8 0.38 8.2E-06 47.2 0.9 68 2-83 42-111 (272)
402 TIGR03878 thermo_KaiC_2 KaiC d 84.8 4.5 9.8E-05 39.4 8.4 30 2-33 45-74 (259)
403 cd03238 ABC_UvrA The excision 84.7 2.2 4.7E-05 38.8 5.7 100 2-113 30-152 (176)
404 TIGR03498 FliI_clade3 flagella 84.7 3.3 7.1E-05 43.2 7.6 80 2-84 149-242 (418)
405 PF07015 VirC1: VirC1 protein; 84.7 1.5 3.3E-05 41.1 4.7 34 2-37 11-44 (231)
406 PF13671 AAA_33: AAA domain; P 84.6 0.68 1.5E-05 40.3 2.4 18 1-18 7-24 (143)
407 PF00910 RNA_helicase: RNA hel 84.6 0.88 1.9E-05 37.4 2.8 19 2-20 7-25 (107)
408 PRK08233 hypothetical protein; 84.5 0.63 1.4E-05 42.6 2.2 18 1-18 11-28 (182)
409 COG0467 RAD55 RecA-superfamily 84.5 1.9 4.2E-05 42.1 5.7 45 2-51 32-76 (260)
410 cd03228 ABCC_MRP_Like The MRP 84.4 1.7 3.7E-05 39.3 5.0 17 2-18 37-53 (171)
411 PF06745 KaiC: KaiC; InterPro 84.4 2 4.3E-05 41.0 5.6 40 2-44 28-67 (226)
412 cd00984 DnaB_C DnaB helicase C 84.3 6.8 0.00015 37.7 9.4 43 2-47 22-64 (242)
413 PF02367 UPF0079: Uncharacteri 84.2 0.73 1.6E-05 38.7 2.2 18 3-20 25-42 (123)
414 COG1419 FlhF Flagellar GTP-bin 84.1 5.9 0.00013 40.5 8.9 79 2-82 212-291 (407)
415 TIGR03497 FliI_clade2 flagella 84.1 2.8 6E-05 43.7 6.8 80 2-84 146-239 (413)
416 PF13245 AAA_19: Part of AAA d 84.0 2.1 4.6E-05 32.5 4.5 17 2-18 19-36 (76)
417 cd02028 UMPK_like Uridine mono 83.8 2.3 5E-05 38.8 5.5 18 2-19 8-25 (179)
418 cd02029 PRK_like Phosphoribulo 83.8 4.5 9.7E-05 39.1 7.5 70 2-73 8-85 (277)
419 cd03221 ABCF_EF-3 ABCF_EF-3 E 83.8 2.9 6.3E-05 36.5 6.0 92 2-113 35-130 (144)
420 PF00406 ADK: Adenylate kinase 83.8 2.7 5.9E-05 37.0 5.8 17 2-18 5-21 (151)
421 PRK07594 type III secretion sy 83.7 3.9 8.4E-05 42.7 7.7 79 2-84 164-257 (433)
422 cd02040 NifH NifH gene encodes 83.7 1.3 2.9E-05 43.5 4.3 33 2-36 10-42 (270)
423 PF09848 DUF2075: Uncharacteri 83.7 3.1 6.7E-05 42.8 7.0 34 1-34 9-42 (352)
424 cd01136 ATPase_flagellum-secre 83.6 4.6 0.0001 40.5 7.9 79 2-84 78-171 (326)
425 PF03969 AFG1_ATPase: AFG1-lik 83.6 0.79 1.7E-05 46.8 2.6 90 2-112 71-169 (362)
426 PF02374 ArsA_ATPase: Anion-tr 83.5 1.6 3.4E-05 43.7 4.6 37 2-40 10-46 (305)
427 COG0125 Tmk Thymidylate kinase 83.4 2.3 4.9E-05 39.7 5.3 42 2-45 12-53 (208)
428 cd03281 ABC_MSH5_euk MutS5 hom 83.3 1.6 3.4E-05 41.2 4.3 44 71-114 107-158 (213)
429 PF03029 ATP_bind_1: Conserved 83.2 1.1 2.4E-05 42.9 3.3 29 1-31 4-32 (238)
430 PRK05922 type III secretion sy 83.1 5.8 0.00013 41.4 8.6 79 2-84 166-259 (434)
431 cd02036 MinD Bacterial cell di 83.0 0.89 1.9E-05 41.4 2.5 30 1-32 8-37 (179)
432 TIGR03496 FliI_clade1 flagella 83.0 3.8 8.2E-05 42.7 7.3 79 2-84 146-239 (411)
433 PRK00131 aroK shikimate kinase 83.0 0.84 1.8E-05 41.4 2.3 18 1-18 12-29 (175)
434 PRK13947 shikimate kinase; Pro 82.9 0.81 1.8E-05 41.4 2.2 20 1-20 9-28 (171)
435 cd01134 V_A-ATPase_A V/A-type 82.9 8.2 0.00018 38.9 9.1 40 2-45 166-206 (369)
436 PF10236 DAP3: Mitochondrial r 82.5 29 0.00063 34.8 13.2 47 122-168 258-306 (309)
437 TIGR02655 circ_KaiC circadian 82.5 5.7 0.00012 42.8 8.7 38 2-43 30-68 (484)
438 PRK09302 circadian clock prote 82.4 6.2 0.00013 42.9 9.1 43 2-49 282-324 (509)
439 PRK05800 cobU adenosylcobinami 82.3 2.9 6.4E-05 37.7 5.5 73 2-81 10-85 (170)
440 CHL00059 atpA ATP synthase CF1 82.3 4.8 0.0001 42.5 7.7 79 2-84 150-245 (485)
441 PRK09281 F0F1 ATP synthase sub 82.1 5 0.00011 42.9 7.9 79 2-84 171-266 (502)
442 KOG0734 AAA+-type ATPase conta 82.0 2.8 6.1E-05 43.9 5.7 62 2-83 346-407 (752)
443 PRK05342 clpX ATP-dependent pr 82.0 2.5 5.5E-05 44.1 5.6 18 2-19 117-134 (412)
444 PF10443 RNA12: RNA12 protein; 82.0 52 0.0011 34.2 14.6 113 73-189 149-298 (431)
445 cd02021 GntK Gluconate kinase 82.0 0.95 2.1E-05 39.9 2.2 17 1-17 7-23 (150)
446 TIGR01281 DPOR_bchL light-inde 81.9 0.99 2.1E-05 44.4 2.5 30 2-33 9-38 (268)
447 cd01983 Fer4_NifH The Fer4_Nif 81.8 1.2 2.6E-05 35.5 2.6 18 2-19 8-25 (99)
448 KOG0728 26S proteasome regulat 81.7 21 0.00045 33.7 10.6 119 2-140 190-330 (404)
449 TIGR01287 nifH nitrogenase iro 81.5 1.8 3.9E-05 42.8 4.2 32 2-35 9-40 (275)
450 COG0572 Udk Uridine kinase [Nu 81.4 1 2.2E-05 41.8 2.2 19 2-20 17-35 (218)
451 COG1136 SalX ABC-type antimicr 81.4 5.6 0.00012 37.4 7.0 49 64-114 153-207 (226)
452 PTZ00301 uridine kinase; Provi 81.2 1 2.2E-05 42.1 2.2 18 2-19 12-29 (210)
453 PRK13768 GTPase; Provisional 81.2 6.6 0.00014 38.1 7.9 29 1-31 10-38 (253)
454 TIGR01448 recD_rel helicase, p 81.2 4.8 0.0001 45.6 7.8 96 2-108 347-451 (720)
455 PRK09270 nucleoside triphospha 81.2 4.8 0.0001 38.5 6.9 19 2-20 42-60 (229)
456 KOG0735 AAA+-type ATPase [Post 81.2 21 0.00046 39.2 11.9 144 1-166 709-871 (952)
457 PRK13231 nitrogenase reductase 81.0 1.5 3.4E-05 42.9 3.5 30 2-34 11-40 (264)
458 PRK10037 cell division protein 81.0 1.1 2.5E-05 43.4 2.5 30 2-33 11-40 (250)
459 KOG0473 Leucine-rich repeat pr 80.8 0.061 1.3E-06 49.4 -5.8 84 328-412 40-124 (326)
460 TIGR00150 HI0065_YjeE ATPase, 80.7 1.1 2.3E-05 38.3 2.0 18 2-19 31-48 (133)
461 cd03246 ABCC_Protease_Secretio 80.7 3 6.5E-05 37.8 5.1 17 2-18 37-53 (173)
462 PRK06731 flhF flagellar biosyn 80.7 9 0.00019 37.4 8.5 80 2-83 84-165 (270)
463 cd00227 CPT Chloramphenicol (C 80.7 1.1 2.4E-05 40.7 2.3 18 1-18 10-27 (175)
464 PRK07721 fliI flagellum-specif 80.6 6.5 0.00014 41.4 8.0 79 2-83 167-259 (438)
465 PRK05688 fliI flagellum-specif 80.6 8.3 0.00018 40.5 8.7 79 2-84 177-270 (451)
466 PRK13185 chlL protochlorophyll 80.6 1.2 2.6E-05 43.9 2.6 29 2-32 11-39 (270)
467 PRK06547 hypothetical protein; 80.5 1.2 2.6E-05 40.3 2.3 18 1-18 23-40 (172)
468 cd03216 ABC_Carb_Monos_I This 80.4 1.5 3.1E-05 39.4 2.9 104 2-113 35-145 (163)
469 PRK06696 uridine kinase; Valid 80.4 2.5 5.4E-05 40.2 4.6 19 2-20 31-49 (223)
470 COG4778 PhnL ABC-type phosphon 80.3 1.6 3.4E-05 38.5 2.8 25 2-29 46-70 (235)
471 PRK13230 nitrogenase reductase 80.3 1.2 2.6E-05 44.0 2.5 29 2-32 10-38 (279)
472 PRK10875 recD exonuclease V su 80.3 4.2 9E-05 44.9 6.8 45 2-46 176-221 (615)
473 PRK10646 ADP-binding protein; 80.2 1.1 2.4E-05 39.2 1.9 18 3-20 38-55 (153)
474 PRK05439 pantothenate kinase; 80.2 6 0.00013 39.4 7.3 70 2-73 95-166 (311)
475 PRK13886 conjugal transfer pro 80.1 4.7 0.0001 38.4 6.2 19 2-20 12-30 (241)
476 PRK14529 adenylate kinase; Pro 80.0 5.9 0.00013 37.4 6.8 79 1-84 8-88 (223)
477 PF02223 Thymidylate_kin: Thym 79.9 3.6 7.8E-05 37.8 5.4 43 1-46 4-47 (186)
478 TIGR01351 adk adenylate kinase 79.9 5.8 0.00013 37.2 6.9 18 1-18 7-24 (210)
479 KOG2035 Replication factor C, 79.8 9 0.00019 36.8 7.8 75 120-196 178-264 (351)
480 cd02024 NRK1 Nicotinamide ribo 79.8 1.2 2.7E-05 40.7 2.1 17 2-18 8-24 (187)
481 PF03266 NTPase_1: NTPase; In 79.8 1.4 3E-05 39.7 2.5 18 2-19 8-25 (168)
482 PRK07165 F0F1 ATP synthase sub 79.7 4.4 9.5E-05 43.0 6.4 80 2-84 152-245 (507)
483 PF06564 YhjQ: YhjQ protein; 79.5 2.1 4.6E-05 40.8 3.7 29 2-32 11-39 (243)
484 TIGR01969 minD_arch cell divis 79.4 1.4 2.9E-05 42.9 2.5 29 2-32 10-38 (251)
485 KOG2859 DNA repair protein, me 79.3 9.8 0.00021 35.0 7.5 49 2-50 47-99 (293)
486 COG3265 GntK Gluconate kinase 79.2 1.3 2.9E-05 38.0 2.0 19 2-20 4-22 (161)
487 cd01672 TMPK Thymidine monopho 79.2 4.1 9E-05 37.7 5.7 20 1-20 8-27 (200)
488 TIGR03880 KaiC_arch_3 KaiC dom 79.1 7.1 0.00015 37.1 7.3 38 2-43 25-62 (224)
489 PRK13946 shikimate kinase; Pro 79.1 1.4 2.9E-05 40.5 2.3 19 1-19 18-36 (184)
490 PF01202 SKI: Shikimate kinase 79.0 1.3 2.9E-05 39.4 2.1 19 2-20 1-19 (158)
491 cd02034 CooC The accessory pro 79.0 2.5 5.5E-05 35.2 3.6 28 2-31 8-35 (116)
492 TIGR00962 atpA proton transloc 79.0 6.7 0.00015 41.9 7.6 79 2-84 170-265 (501)
493 PRK04182 cytidylate kinase; Pr 79.0 2.9 6.2E-05 38.1 4.4 18 1-18 8-25 (180)
494 PRK14531 adenylate kinase; Pro 78.9 5.5 0.00012 36.4 6.3 18 1-18 10-27 (183)
495 PRK13232 nifH nitrogenase redu 78.9 1.4 3.1E-05 43.4 2.5 19 2-20 10-28 (273)
496 PRK13949 shikimate kinase; Pro 78.9 1.4 3E-05 39.7 2.2 18 1-18 9-26 (169)
497 TIGR01313 therm_gnt_kin carboh 78.8 1.4 3E-05 39.5 2.2 18 1-18 6-23 (163)
498 PRK13235 nifH nitrogenase redu 78.8 1.4 3.1E-05 43.4 2.5 29 2-32 10-38 (274)
499 PRK04040 adenylate kinase; Pro 78.8 1.4 3.1E-05 40.4 2.3 18 1-18 10-27 (188)
500 PRK14527 adenylate kinase; Pro 78.8 5.4 0.00012 36.8 6.2 17 2-18 15-31 (191)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-69 Score=592.94 Aligned_cols=503 Identities=30% Similarity=0.425 Sum_probs=404.5
Q ss_pred CCCCcHHHHHHHHHHhhh-hcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchH--HHHHHHHHHHHcCCcEEEE
Q 048755 1 MGGIGKTTLVKEVGRQAK-ENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESET--VRAWRLLEQLKKETKILII 77 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~--~~~~~~~~~l~~~kr~LlV 77 (674)
|||+||||||++++|+.. ++.+||.++||.||+.++..+++++|++.++.......+. ...+..+..++.+|||+||
T Consensus 187 MGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllv 266 (889)
T KOG4658|consen 187 MGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLV 266 (889)
T ss_pred CCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEE
Confidence 899999999999999999 8999999999999999999999999999998755443332 3444444555557999999
Q ss_pred EeCCCCccchhhccCCcCCCCCCeEEEEEeCChhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCC--CCCCchhHHHH
Q 048755 78 LDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDC--IENGELKSVAT 155 (674)
Q Consensus 78 lDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~ 155 (674)
+||||+..+|+.+..++|....||+|++|||++.|+...++....+++..|+.+|||++|.+.+++. ...+...++|+
T Consensus 267 LDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak 346 (889)
T KOG4658|consen 267 LDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAK 346 (889)
T ss_pred EecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHH
Confidence 9999999999999999999999999999999999987668888899999999999999999999844 33455899999
Q ss_pred HHHHHhCCchhhHHHHHHHHhcC-ChHHHHHHHHHhccccccCCCcccccceeeeeeecccCCChHHHHHHHHHhcccc-
Q 048755 156 EVVKECAGLPIAIVPVAKALKNK-SLYEWRNALRQLKRPFLRSFSGTQAVAAYSTIELSYYQLEGEELRRTFLLIGYAF- 233 (674)
Q Consensus 156 ~i~~~c~g~Plal~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~l~~~f~~~a~fp- 233 (674)
+++++|+|+|||++++|+.|+.+ +..+|+++++.+.+.......++. +.+++++.+||+.|+.+ +|.||+|||+||
T Consensus 347 ~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~-~~i~~iLklSyd~L~~~-lK~CFLycalFPE 424 (889)
T KOG4658|consen 347 EVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME-ESILPILKLSYDNLPEE-LKSCFLYCALFPE 424 (889)
T ss_pred HHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh-hhhHHhhhccHhhhhHH-HHHHHHhhccCCc
Confidence 99999999999999999999977 888999999998887555544333 78999999999999955 999999999999
Q ss_pred --ccchhhhhhhhcccccccccccHHHHHHHHHHHHHHHHhhcccccC----------------Cchhhccc-----ccc
Q 048755 234 --ISCVKDVICYGMGLGLFQNINTLEEARDRAHTLVDKLKNSCLLLDG----------------DTTISIAS-----RVQ 290 (674)
Q Consensus 234 --~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~----------------~~~~~~~~-----~~~ 290 (674)
.|.++.++.+|+|+||+++....+.+++.+.+++.+|+++|+++.+ |+|.++++ +++
T Consensus 425 D~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~ 504 (889)
T KOG4658|consen 425 DYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN 504 (889)
T ss_pred ccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc
Confidence 7889999999999999998666677888999999999988888774 67777777 555
Q ss_pred eEEEee-cCCCCCCccccccceeEeeccccccCCCCCcCCCCCcEEEcccCC--CcccCchhhcCCCcceEEEecCc-cc
Q 048755 291 HVFAVE-NETSWPDKDTLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDP--SLRISDNIFTGMTELRVLDFTEM-HL 366 (674)
Q Consensus 291 ~~~~~~-~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~Lr~L~l~~~-~~ 366 (674)
...... +....+....+...|++++.++.+..++....+++|++|.+..|. ...++..+|..++.||||||++| .+
T Consensus 505 ~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l 584 (889)
T KOG4658|consen 505 QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL 584 (889)
T ss_pred eEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc
Confidence 322221 123345566678899999999999999999999999999999986 67788888999999999999977 46
Q ss_pred CCCCcccccccCCcEEEcCCcCCCC-cccccCcCCccEEecCCCC-chhchHhhcCCCCCcEEeCCCCC-CCCCCChhhh
Q 048755 367 LALPSSLGLLQNLQTLSLDFCILGD-IAIIGDLKKLEILTLRGSD-MEKLVEEMGELTQLRLLDLSYCF-NLQVIPPNVI 443 (674)
Q Consensus 367 ~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~l~~~~-~~~~~~~~~l 443 (674)
.++|..|+.|.+||||+++++.+.. |.++++|+.|.+||+..+. ...+|.....|++|++|.+.... ..+......+
T Consensus 585 ~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el 664 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKEL 664 (889)
T ss_pred CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhh
Confidence 6999999999999999999999988 8999999999999999885 44555666679999999987653 1111111224
Q ss_pred hCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCcc----EEEeeeccCCCCCcccccccCccEEEEEEcccc
Q 048755 444 SSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLT----SLEILIQDEKTLPRDLSFFKMLQRYRISIGYDW 519 (674)
Q Consensus 444 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 519 (674)
.++.+|+.+...... ...+..+..+++|+ .+.+.++.....+..+..+.+|+.|.+..|...
T Consensus 665 ~~Le~L~~ls~~~~s--------------~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 665 ENLEHLENLSITISS--------------VLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hcccchhhheeecch--------------hHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCc
Confidence 444555544442221 12233334444444 223233344455666778888888888877654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.2e-56 Score=522.26 Aligned_cols=621 Identities=19% Similarity=0.235 Sum_probs=434.2
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEe---cCC-----------cC-HHHHHHHHHHHhCCCCcc-cchHHHHHHH
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRV---SQT-----------PQ-IKEIQREIAEKLGLKIDE-ESETVRAWRL 64 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~---~~~-----------~~-~~~~~~~i~~~l~~~~~~-~~~~~~~~~~ 64 (674)
|||+||||||+++|++...+ |++.+|++. +.. +. ...++++++..+...... ... ...+
T Consensus 215 ~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~---~~~~ 289 (1153)
T PLN03210 215 SSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH---LGAM 289 (1153)
T ss_pred CCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC---HHHH
Confidence 79999999999999988755 988887742 111 01 223455555554322111 111 1233
Q ss_pred HHHHHcCCcEEEEEeCCCCccchhhccCCcCCCCCCeEEEEEeCChhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCC
Q 048755 65 LEQLKKETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDC 144 (674)
Q Consensus 65 ~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 144 (674)
.+++ .+||+||||||||+.++|+.+.....+++.|++||||||++.++. ..+....|+++.++.++|+++|.++||..
T Consensus 290 ~~~L-~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~ 367 (1153)
T PLN03210 290 EERL-KHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLR-AHGIDHIYEVCLPSNELALEMFCRSAFKK 367 (1153)
T ss_pred HHHH-hCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCC
Confidence 4444 468999999999999999999877777889999999999999975 34566899999999999999999999843
Q ss_pred -CCCCchhHHHHHHHHHhCCchhhHHHHHHHHhcCChHHHHHHHHHhccccccCCCcccccceeeeeeecccCCChHHHH
Q 048755 145 -IENGELKSVATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLKRPFLRSFSGTQAVAAYSTIELSYYQLEGEELR 223 (674)
Q Consensus 145 -~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~l~ 223 (674)
.++..+.+++++|+++|+|+|||++++|++|++++..+|+++++++.... ...+..++++||+.|++++.|
T Consensus 368 ~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~--------~~~I~~~L~~SYd~L~~~~~k 439 (1153)
T PLN03210 368 NSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL--------DGKIEKTLRVSYDGLNNKKDK 439 (1153)
T ss_pred CCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc--------cHHHHHHHHHhhhccCccchh
Confidence 34556889999999999999999999999999999999999999986532 156789999999999875469
Q ss_pred HHHHHhcccc-ccchhhhhhhhcccccccccccHH-----------HHHHHHHHHHHHHHhhcccccC------------
Q 048755 224 RTFLLIGYAF-ISCVKDVICYGMGLGLFQNINTLE-----------EARDRAHTLVDKLKNSCLLLDG------------ 279 (674)
Q Consensus 224 ~~f~~~a~fp-~~~~~~li~~w~~~g~~~~~~~~~-----------~~~~~~~~l~~~l~~~~~~~~~------------ 279 (674)
.||+++|+|| ..+.+ .+..|++.+.+......+ .....||+++++++.....++.
T Consensus 440 ~~Fl~ia~ff~~~~~~-~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~ 518 (1153)
T PLN03210 440 AIFRHIACLFNGEKVN-DIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDA 518 (1153)
T ss_pred hhhheehhhcCCCCHH-HHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCH
Confidence 9999999998 44443 455555544332111111 1234689999988765544331
Q ss_pred -Cchh---hcc--cccceEEEeecC-----CCCCCccccccceeEeeccccc-------cCCCCCc-C-CCCCcEEEccc
Q 048755 280 -DTTI---SIA--SRVQHVFAVENE-----TSWPDKDTLKVCTAISLFNTNI-------SELPQGF-E-CPQLKYFHIRN 339 (674)
Q Consensus 280 -~~~~---~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~l~~~~~-------~~~~~~~-~-~~~L~~L~l~~ 339 (674)
|... ... ......+..... ........+.+++.|.+..+.. -.+|..+ . ..+||.|.+.+
T Consensus 519 ~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~ 598 (1153)
T PLN03210 519 KDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDK 598 (1153)
T ss_pred HHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecC
Confidence 0000 000 000111100000 0001123356677776654421 1345544 2 25699999998
Q ss_pred CCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcC-CCCcccccCcCCccEEecCCC-CchhchHh
Q 048755 340 DPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCI-LGDIAIIGDLKKLEILTLRGS-DMEKLVEE 417 (674)
Q Consensus 340 ~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~ 417 (674)
+....+|..+ ...+|+.|++.++.+..+|..+..+++|++|++++|. +..++.++.+++|++|++.+| .+..+|..
T Consensus 599 ~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s 676 (1153)
T PLN03210 599 YPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS 676 (1153)
T ss_pred CCCCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh
Confidence 8887887764 5789999999999999999888999999999999874 555677888999999999998 57789999
Q ss_pred hcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCccEEEeeeccCCC
Q 048755 418 MGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKT 497 (674)
Q Consensus 418 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 497 (674)
++++++|++|++++|..+..+|.. + ++++|+.|.+++|.... ..+. ..++|+.|++.++.+..
T Consensus 677 i~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~------------~~p~---~~~nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLK------------SFPD---ISTNISWLDLDETAIEE 739 (1153)
T ss_pred hhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCcc------------cccc---ccCCcCeeecCCCcccc
Confidence 999999999999999889988875 3 78999999998886421 1111 24678999999998888
Q ss_pred CCcccccccCccEEEEEEcccc------cccCCC--CcccceeEEeecCCCceecchhHHhhhccccEEEecCCCCcccc
Q 048755 498 LPRDLSFFKMLQRYRISIGYDW------WSVGPW--DGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNV 569 (674)
Q Consensus 498 ~~~~l~~~~~L~~L~l~~~~~~------~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 569 (674)
+|..+ .+++|+.|.+..+... ..+++. ..++++..|.+.++......+.....+++|+.|+|.+|..++.+
T Consensus 740 lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 740 FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence 88765 5778888877653311 001111 11235666776655444333333456788888888888777776
Q ss_pred ccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCccccCCccEEEEecCCC
Q 048755 570 LCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDK 649 (674)
Q Consensus 570 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~ 649 (674)
+.. ..+++|+.|++++|..++.++. ..++|+.|++.+. .++.+ |.++..+++|+.|++.+|++
T Consensus 819 P~~---~~L~sL~~L~Ls~c~~L~~~p~----------~~~nL~~L~Ls~n-~i~~i---P~si~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 819 PTG---INLESLESLDLSGCSRLRTFPD----------ISTNISDLNLSRT-GIEEV---PWWIEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred CCC---CCccccCEEECCCCCccccccc----------cccccCEeECCCC-CCccC---hHHHhcCCCCCEEECCCCCC
Confidence 543 2578888888888877765431 2346666766653 45555 55567788888888888888
Q ss_pred ccccCCchhhhhcccceecccccCC
Q 048755 650 LKNVFPLVIELTQLRTLELKNVFPL 674 (674)
Q Consensus 650 L~~l~~~~~~l~~L~~L~l~~c~~l 674 (674)
|+.+|.....+++|+.+++++|.+|
T Consensus 882 L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 882 LQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred cCccCcccccccCCCeeecCCCccc
Confidence 8888776666888888888888754
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3e-38 Score=316.53 Aligned_cols=250 Identities=32% Similarity=0.511 Sum_probs=193.6
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCc---ccchHHHHHHHHHHHHcCCcEEEE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKID---EESETVRAWRLLEQLKKETKILII 77 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~~~~l~~~kr~LlV 77 (674)
|||+||||||++++++...+.+|+.++|+++++..+..+++++|+.+++.... ...+.......+.....++++|||
T Consensus 27 ~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlV 106 (287)
T PF00931_consen 27 MGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLV 106 (287)
T ss_dssp STTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEE
T ss_pred CCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccccceee
Confidence 79999999999999997777889999999999999999999999999988743 223333344444444556799999
Q ss_pred EeCCCCccchhhccCCcCCCCCCeEEEEEeCChhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCC--CCCchhHHHH
Q 048755 78 LDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCI--ENGELKSVAT 155 (674)
Q Consensus 78 lDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~~ 155 (674)
|||||+..+|+.+...++....|++||||||++.++.........+++++|+.++|+++|.+.++... .++...+.++
T Consensus 107 lDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~ 186 (287)
T PF00931_consen 107 LDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAK 186 (287)
T ss_dssp EEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHH
T ss_pred eeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999988888777889999999999988753333367899999999999999999997433 4456678899
Q ss_pred HHHHHhCCchhhHHHHHHHHhcC-ChHHHHHHHHHhccccccCCCcccccceeeeeeecccCCChHHHHHHHHHhcccc-
Q 048755 156 EVVKECAGLPIAIVPVAKALKNK-SLYEWRNALRQLKRPFLRSFSGTQAVAAYSTIELSYYQLEGEELRRTFLLIGYAF- 233 (674)
Q Consensus 156 ~i~~~c~g~Plal~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~l~~~f~~~a~fp- 233 (674)
+|+++|+|+|+|++++|++++.+ +..+|+++++.+......... ....++.++..||+.|+++ +|+||.|+|+||
T Consensus 187 ~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~--~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~ 263 (287)
T PF00931_consen 187 EIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRD--YDRSVFSALELSYDSLPDE-LRRCFLYLSIFPE 263 (287)
T ss_dssp HHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSG--SCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc--ccccccccceechhcCCcc-HHHHHhhCcCCCC
Confidence 99999999999999999999644 788999999887776543211 2378889999999999997 899999999999
Q ss_pred --ccchhhhhhhhccccccccc
Q 048755 234 --ISCVKDVICYGMGLGLFQNI 253 (674)
Q Consensus 234 --~~~~~~li~~w~~~g~~~~~ 253 (674)
.++.+.++++|+++||++..
T Consensus 264 ~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 264 GVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp TS-EEHHHHHHHHTT-HHTC--
T ss_pred CceECHHHHHHHHHHCCCCccc
Confidence 67899999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.1e-24 Score=255.24 Aligned_cols=351 Identities=18% Similarity=0.152 Sum_probs=150.4
Q ss_pred ccceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccC-CCCcccccccCCcEEEcCC
Q 048755 308 KVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLL-ALPSSLGLLQNLQTLSLDF 386 (674)
Q Consensus 308 ~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~ 386 (674)
.++++|++++|.+....+...+++|++|++++|......+..++.+++|++|++++|.+. .+|..++.+++|++|++++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 197 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccC
Confidence 445555555544432111123445555555555444333333455555555555555544 3455555555555555555
Q ss_pred cCCCC--cccccCcCCccEEecCCCCch-hchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcccc
Q 048755 387 CILGD--IAIIGDLKKLEILTLRGSDME-KLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGK 463 (674)
Q Consensus 387 ~~~~~--~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 463 (674)
|.+.. |..++.+++|++|++++|++. .+|..++++++|++|++++|...+.+|.. ++++++|++|++.+|.+....
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccC
Confidence 54432 344555555555555555444 44445555555555555555433334433 455555555555544431000
Q ss_pred ccc------------cCCcccccchhhhcCCCCccEEEeeeccC-CCCCcccccccCccEEEEEEcccccccCCC-Cccc
Q 048755 464 VGG------------VDGERRNASLDELNNLSKLTSLEILIQDE-KTLPRDLSFFKMLQRYRISIGYDWWSVGPW-DGIS 529 (674)
Q Consensus 464 ~~~------------~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~ 529 (674)
... .........+..+..+++|+.|++.+|.. +.+|..+..+++|+.|+++.+.....+|.+ ....
T Consensus 277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~ 356 (968)
T PLN00113 277 PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN 356 (968)
T ss_pred chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC
Confidence 000 00000011222233333444444433332 123333333444444444333322222221 1122
Q ss_pred ceeEEeecCCCceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCC
Q 048755 530 RKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAF 609 (674)
Q Consensus 530 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 609 (674)
++..|++.++......+.....+++|+.|.+.+|......+... ..+++|+.|.+.+|. ++... +.....+
T Consensus 357 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L~L~~n~-l~~~~------p~~~~~l 427 (968)
T PLN00113 357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQDNS-FSGEL------PSEFTKL 427 (968)
T ss_pred CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH--hCCCCCCEEECcCCE-eeeEC------ChhHhcC
Confidence 33333333222211111111123444444444443322222211 345555555555552 11110 0023345
Q ss_pred CccccccccCcccccccccCCCCccccCCccEEEEecCCCccccCCchhhhhcccceeccccc
Q 048755 610 PLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTLELKNVF 672 (674)
Q Consensus 610 ~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~l~~L~~L~l~~c~ 672 (674)
++|+.|+++++.--..+ +.....+++|+.|++.+|.....+|. ....++|+.|+++++.
T Consensus 428 ~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~~~L~~L~ls~n~ 486 (968)
T PLN00113 428 PLVYFLDISNNNLQGRI---NSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQ 486 (968)
T ss_pred CCCCEEECcCCcccCcc---ChhhccCCCCcEEECcCceeeeecCc-ccccccceEEECcCCc
Confidence 66666666655322222 23334567777777777765544443 2335777777777653
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=2.7e-24 Score=251.98 Aligned_cols=347 Identities=18% Similarity=0.188 Sum_probs=231.1
Q ss_pred ccccceeEeecccccc-CCCCCc--CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccC-CCCcccccccCCcE
Q 048755 306 TLKVCTAISLFNTNIS-ELPQGF--ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLL-ALPSSLGLLQNLQT 381 (674)
Q Consensus 306 ~~~~~~~l~l~~~~~~-~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-~lp~~~~~l~~L~~ 381 (674)
.+++++.|++++|.+. .+|..+ .+++|+.|++++|......+. ..+++|++|++++|.+. .+|..++.+++|++
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 3567777888777765 566543 677888888887766543332 45778888888888776 56777888888888
Q ss_pred EEcCCcCCCC--cccccCcCCccEEecCCCCch-hchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCC
Q 048755 382 LSLDFCILGD--IAIIGDLKKLEILTLRGSDME-KLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSP 458 (674)
Q Consensus 382 L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 458 (674)
|++++|.+.. |..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+|.
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNN 247 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCce
Confidence 8888887654 567788888888888888766 67778888888888888888666666665 7888888888888876
Q ss_pred CccccccccCCcccccchhhhcCCCCccEEEeeeccC-CCCCcccccccCccEEEEEEcccccccCCC-CcccceeEEee
Q 048755 459 IMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDE-KTLPRDLSFFKMLQRYRISIGYDWWSVGPW-DGISRKFKLKL 536 (674)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~l~~ 536 (674)
+ ....+..++++++|+.|++++|.. +.+|..+..+++|+.|+++.|.....+|.+ ..+.++..|.+
T Consensus 248 l------------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 315 (968)
T PLN00113 248 L------------TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315 (968)
T ss_pred e------------ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEEC
Confidence 5 223456677778888888887764 456777777788888888766554455554 33456677776
Q ss_pred cCCCceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecC-----------------
Q 048755 537 TNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTM----------------- 599 (674)
Q Consensus 537 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~----------------- 599 (674)
.++......+.....+++|+.|++.+|.....++... +.+++|+.|++++|.--..++...
T Consensus 316 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 316 FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393 (968)
T ss_pred CCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec
Confidence 6554443333344457788888887776554444332 556777777777662111111100
Q ss_pred CCCCCCCCCCCccccccccCcccccccccCCCCccccCCccEEEEecCCCccccCCchhhhhcccceeccccc
Q 048755 600 DCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTLELKNVF 672 (674)
Q Consensus 600 ~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~l~~L~~L~l~~c~ 672 (674)
...+.....+++|+.|++.+|.--..+ |..+..+++|+.|++++|.--..++.....+++|+.|++++|.
T Consensus 394 ~~~p~~~~~~~~L~~L~L~~n~l~~~~---p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 394 GEIPKSLGACRSLRRVRLQDNSFSGEL---PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred ccCCHHHhCCCCCCEEECcCCEeeeEC---ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 001112334667777777776433333 4456678888888888765433444434448888888888774
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=2.2e-24 Score=216.06 Aligned_cols=340 Identities=20% Similarity=0.284 Sum_probs=209.2
Q ss_pred ccccccceeEeeccccccCCCCCc-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccC--CCCcccccccCCc
Q 048755 304 KDTLKVCTAISLFNTNISELPQGF-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLL--ALPSSLGLLQNLQ 380 (674)
Q Consensus 304 ~~~~~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~--~lp~~~~~l~~L~ 380 (674)
...+..++.|.+....+..+|+.. .|.+|+.|.+..|+...+..+. +.++.||.+++..|++. .+|+.+-.+..|.
T Consensus 28 v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt 106 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLT 106 (1255)
T ss_pred HHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhh-ccchhhHHHhhhccccccCCCCchhcccccce
Confidence 344566677777777777777766 6777777777777776666653 66777777777777665 4677777777777
Q ss_pred EEEcCCcCCCC-cccccCcCCccEEecCCCCchhchH-hhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCC
Q 048755 381 TLSLDFCILGD-IAIIGDLKKLEILTLRGSDMEKLVE-EMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSP 458 (674)
Q Consensus 381 ~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 458 (674)
.|+|++|.+.+ |..+..-+++.+|+|++|+|+++|. .+-+++.|-+|++++| .+..+|+. +..+.+|++|.+++|+
T Consensus 107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNP 184 (1255)
T ss_pred eeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCCh
Confidence 77777777766 6667777777777777777777773 3556777777777776 56667766 6777777777777776
Q ss_pred CccccccccCCcccccchhhhcCCCCccEEEeeecc--CCCCCcccccccCccEEEEEEcccccccCCCC-cccceeEEe
Q 048755 459 IMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQD--EKTLPRDLSFFKMLQRYRISIGYDWWSVGPWD-GISRKFKLK 535 (674)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~l~ 535 (674)
+ ....+..+..+++|++|.++++. ...+|.++..+.+|..++++.+ ++..+|... .+.++.+|.
T Consensus 185 L------------~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 185 L------------NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLN 251 (1255)
T ss_pred h------------hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheec
Confidence 5 22233444455555555555543 4455666666666666666532 222222221 122444454
Q ss_pred ecCCCceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccc
Q 048755 536 LTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESL 615 (674)
Q Consensus 536 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L 615 (674)
++++......... +...+|+.|.++++. ++.++..+ ..+++|+.|.+.++ +++. ...|+.++.+.+|+.+
T Consensus 252 LS~N~iteL~~~~-~~W~~lEtLNlSrNQ-Lt~LP~av--cKL~kL~kLy~n~N-kL~F-----eGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 252 LSGNKITELNMTE-GEWENLETLNLSRNQ-LTVLPDAV--CKLTKLTKLYANNN-KLTF-----EGIPSGIGKLIQLEVF 321 (1255)
T ss_pred cCcCceeeeeccH-HHHhhhhhhccccch-hccchHHH--hhhHHHHHHHhccC-cccc-----cCCccchhhhhhhHHH
Confidence 4433332222221 224677777777764 33344333 45777777777655 2221 2233356666777777
Q ss_pred cccCcccccccccCCCCccccCCccEEEEecCCCccccCCchhhhhcccceecccccCC
Q 048755 616 FLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTLELKNVFPL 674 (674)
Q Consensus 616 ~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~l~~L~~L~l~~c~~l 674 (674)
...+ .+|+-+ |.++..|+.|+.|.+. |+.|-++|..+..++-|+.|++.+-++|
T Consensus 322 ~aan-N~LElV---PEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 322 HAAN-NKLELV---PEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred Hhhc-cccccC---chhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCc
Confidence 7665 345555 6667777777777764 5677777665555777777777765543
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=1.4e-20 Score=220.64 Aligned_cols=300 Identities=20% Similarity=0.217 Sum_probs=200.2
Q ss_pred cccceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcc-cCCCCcccccccCCcEEEcC
Q 048755 307 LKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMH-LLALPSSLGLLQNLQTLSLD 385 (674)
Q Consensus 307 ~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~-~~~lp~~~~~l~~L~~L~l~ 385 (674)
+.+++.|.+.++.+..+|..+.+.+|+.|++.++.+..++.. +..+++|++|+|+++. +..+| .++.+++|++|+++
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS 665 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec
Confidence 456899999999999999999999999999999988877765 4789999999999875 45666 58889999999999
Q ss_pred CcC-CCC-cccccCcCCccEEecCCC-CchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccc
Q 048755 386 FCI-LGD-IAIIGDLKKLEILTLRGS-DMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWG 462 (674)
Q Consensus 386 ~~~-~~~-~~~~~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 462 (674)
+|. +.. |..++.+++|+.|++++| .++.+|..+ ++++|++|++++|..+..+|.. .++|++|++.++.+...
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~l 740 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEEF 740 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccccc
Confidence 984 444 788999999999999998 688899766 8999999999999887777642 46788999888875322
Q ss_pred cccccCCccc-----------------ccchhhhcCCCCccEEEeeecc-CCCCCcccccccCccEEEEEEcccccccCC
Q 048755 463 KVGGVDGERR-----------------NASLDELNNLSKLTSLEILIQD-EKTLPRDLSFFKMLQRYRISIGYDWWSVGP 524 (674)
Q Consensus 463 ~~~~~~~~~~-----------------~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 524 (674)
+....-.... ..........++|+.|++++|. ...+|.+++++++|+.|++++|.....+|.
T Consensus 741 P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 741 PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 1100000000 0000000112345555555442 334455555555555555554443333322
Q ss_pred CCcccceeEEeecCCCceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCC
Q 048755 525 WDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPA 604 (674)
Q Consensus 525 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 604 (674)
.. .+++|+.|+|++|..+..++. ..++|+.|++.++ .++.++.
T Consensus 821 ~~------------------------~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n-~i~~iP~------- 863 (1153)
T PLN03210 821 GI------------------------NLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSRT-GIEEVPW------- 863 (1153)
T ss_pred CC------------------------CccccCEEECCCCCccccccc-----cccccCEeECCCC-CCccChH-------
Confidence 21 356777777777766554432 2356777777664 4444332
Q ss_pred CCCCCCccccccccCcccccccccCCCCccccCCccEEEEecCCCcccc
Q 048755 605 PTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNV 653 (674)
Q Consensus 605 ~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 653 (674)
....+++|+.|++.+|++|+.+ +.....+++|+.+++.+|++|..+
T Consensus 864 si~~l~~L~~L~L~~C~~L~~l---~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 864 WIEKFSNLSFLDMNGCNNLQRV---SLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred HHhcCCCCCEEECCCCCCcCcc---CcccccccCCCeeecCCCcccccc
Confidence 3445677777777777777766 445566677777777777777654
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=6.5e-22 Score=197.16 Aligned_cols=342 Identities=18% Similarity=0.234 Sum_probs=218.1
Q ss_pred cccccceeEeeccccccCCCCCc-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEE
Q 048755 305 DTLKVCTAISLFNTNISELPQGF-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTL 382 (674)
Q Consensus 305 ~~~~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L 382 (674)
...++++.+++..|.+..+|.+. ...+++.|++..|.+..+..+.+..++.||+|||+.|.+.++| +.+..=.++++|
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence 34567777777777788888777 4445888888888887777777777888888888888888776 345555678888
Q ss_pred EcCCcCCCCc--ccccCcCCccEEecCCCCchhch-HhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 383 SLDFCILGDI--AIIGDLKKLEILTLRGSDMEKLV-EEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 383 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
+|++|.++.+ ..+..+.+|.+|.|+.|+++.+| ..+.++++|+.|++..| .+..+..-.+..|++|+.|.+..|.+
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCc
Confidence 8888877763 56777778888888888888887 45677888888888777 34444333367788888888877766
Q ss_pred ccccccccCCcccccchhhhcCCCCccEEEeeeccCCCCC-cccccccCccEEEEEEcccc-cccCCCCcccceeEEeec
Q 048755 460 MWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRISIGYDW-WSVGPWDGISRKFKLKLT 537 (674)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~l~~~ 537 (674)
..-.+ .-+-.+.+++.|++..|....+- .|+-++++|+.|+++.+... .....|.-.+++..|++.
T Consensus 258 ~kL~D------------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 258 SKLDD------------GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred ccccC------------cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecc
Confidence 32222 23345677888888887755543 46778888888888876543 333445555566666666
Q ss_pred CCCceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccc
Q 048755 538 NGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFL 617 (674)
Q Consensus 538 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l 617 (674)
.+.....+......+..|+.|.|+.+. +..+-.. ...++.+|++|+++++ .+.-. .++... ....+|+|+.|.+
T Consensus 326 ~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~-af~~lssL~~LdLr~N-~ls~~-IEDaa~--~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 326 SNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEG-AFVGLSSLHKLDLRSN-ELSWC-IEDAAV--AFNGLPSLRKLRL 399 (873)
T ss_pred ccccccCChhHHHHHHHhhhhcccccc-hHHHHhh-HHHHhhhhhhhcCcCC-eEEEE-Eecchh--hhccchhhhheee
Confidence 666666666666666777777776654 2222111 1245677777777665 22211 111111 2233677777777
Q ss_pred cCcccccccccCCCCccccCCccEEEEecCCCccccCCchhhhhcccceecc
Q 048755 618 RDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTLELK 669 (674)
Q Consensus 618 ~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~l~~L~~L~l~ 669 (674)
.+ .+++.++... +..++.|++|++.+.+ +.++-+....--.|++|.++
T Consensus 400 ~g-Nqlk~I~krA--fsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 400 TG-NQLKSIPKRA--FSGLEALEHLDLGDNA-IASIQPNAFEPMELKELVMN 447 (873)
T ss_pred cC-ceeeecchhh--hccCcccceecCCCCc-ceeecccccccchhhhhhhc
Confidence 66 3566665432 3456777777776643 55553333331266666543
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=9.4e-22 Score=196.03 Aligned_cols=338 Identities=19% Similarity=0.247 Sum_probs=199.3
Q ss_pred ccceeEeeccccccCCCCC--cCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcEEEc
Q 048755 308 KVCTAISLFNTNISELPQG--FECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQTLSL 384 (674)
Q Consensus 308 ~~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~l 384 (674)
...+.|++++|.+..+... .++++|+.+++..|....+|.. .....+|..|+|.+|.|.++ ...+..++.|+.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f-~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF-GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc-cccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 4455677777766654433 3677777777777777666653 13345577777777777765 355667777777777
Q ss_pred CCcCCCCc--ccccCcCCccEEecCCCCchhchH-hhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcc
Q 048755 385 DFCILGDI--AIIGDLKKLEILTLRGSDMEKLVE-EMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMW 461 (674)
Q Consensus 385 ~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 461 (674)
+.|.++.+ +++..-.++++|+|.+|.|+.+-. .+.++.+|..|.++.| .++.+|...+.+|+.|+.|++..|.+..
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceee
Confidence 77766662 445555677777777777776552 3566667777777776 4556666656777777777776666521
Q ss_pred ccccccCCcccccchhhhcCCCCccEEEeeeccCCCCCccc-ccccCccEEEEEEcccccccCCCC-cccceeEEeecCC
Q 048755 462 GKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDL-SFFKMLQRYRISIGYDWWSVGPWD-GISRKFKLKLTNG 539 (674)
Q Consensus 462 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~l~~~~~ 539 (674)
. ....+..|++|+.|.+..|++..+.+.. -.+.++++|++..+....--..|. ++..+..|+++.+
T Consensus 236 v------------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 236 V------------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred e------------hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence 1 1234556677777777777665555432 456667777776554332222232 3345555666555
Q ss_pred CceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccC
Q 048755 540 ANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRD 619 (674)
Q Consensus 540 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~ 619 (674)
....+....+...++|++|+|+.+.- +..... ....+..|+.|.++++ +++.+.+. ....+.+|++|+++.
T Consensus 304 aI~rih~d~WsftqkL~~LdLs~N~i-~~l~~~-sf~~L~~Le~LnLs~N-si~~l~e~------af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 304 AIQRIHIDSWSFTQKLKELDLSSNRI-TRLDEG-SFRVLSQLEELNLSHN-SIDHLAEG------AFVGLSSLHKLDLRS 374 (873)
T ss_pred hhheeecchhhhcccceeEecccccc-ccCChh-HHHHHHHhhhhccccc-chHHHHhh------HHHHhhhhhhhcCcC
Confidence 44444444455567777777776542 222221 1234667777777665 44444211 223456677777665
Q ss_pred ccccc-ccccCCCCccccCCccEEEEecCCCccccCCchhh-hhcccceeccc
Q 048755 620 LRNLE-EICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIE-LTQLRTLELKN 670 (674)
Q Consensus 620 c~~L~-~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~-l~~L~~L~l~~ 670 (674)
. ++. .+......+..+|+|+.|.+.| ++++.+|..... +++||+|++.+
T Consensus 375 N-~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 375 N-ELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred C-eEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC
Confidence 2 121 1111122334477777777777 567777666555 77777777643
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=2.2e-22 Score=201.83 Aligned_cols=331 Identities=18% Similarity=0.219 Sum_probs=244.4
Q ss_pred cccceeEeeccccccCCCCCc-CCCCCcEEEcccCCCc--ccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEE
Q 048755 307 LKVCTAISLFNTNISELPQGF-ECPQLKYFHIRNDPSL--RISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLS 383 (674)
Q Consensus 307 ~~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~--~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 383 (674)
..++.+|++.+|.+.++.... .++.||++.+..|... .+|+.+ -++..|.+|||++|.+.+.|..+.+.+++-+|+
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~di-F~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDI-FRLKDLTILDLSHNQLREVPTNLEYAKNSIVLN 132 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchh-cccccceeeecchhhhhhcchhhhhhcCcEEEE
Confidence 456778888888877666554 8889999998887654 477775 569999999999999999999999999999999
Q ss_pred cCCcCCCC-c-ccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcc
Q 048755 384 LDFCILGD-I-AIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMW 461 (674)
Q Consensus 384 l~~~~~~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 461 (674)
|++|.+.. | +-+.++..|-.|||++|+++.+|+.+.++..|+.|.+++|+.. .+...-+..+++|+.|.++++..
T Consensus 133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqR-- 209 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQR-- 209 (1255)
T ss_pred cccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccc--
Confidence 99999887 4 3456889999999999999999999999999999999988532 22211144566677777766643
Q ss_pred ccccccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccc---cccCCCCcccceeEEeecC
Q 048755 462 GKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDW---WSVGPWDGISRKFKLKLTN 538 (674)
Q Consensus 462 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~~l~~~~ 538 (674)
...-.+.++..+.+|+.++++.|+...+|+.+-.+++|+.|.++++... .....|. ++.+|.++.
T Consensus 210 ---------Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~---~lEtLNlSr 277 (1255)
T KOG0444|consen 210 ---------TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWE---NLETLNLSR 277 (1255)
T ss_pred ---------hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHh---hhhhhcccc
Confidence 2344567778888999999999998899999988999999999876533 1112222 556666665
Q ss_pred CCceecchhHHhhhccccEEEecCCCC-ccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccc
Q 048755 539 GANICLNEGHIMQLKGIEDLTLDGLPD-MKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFL 617 (674)
Q Consensus 539 ~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l 617 (674)
+.....|..+.. ++.|+.|.+.+++. .+.++. +.+.+.+|+.+...++ .++-++. ....+++|+.|.+
T Consensus 278 NQLt~LP~avcK-L~kL~kLy~n~NkL~FeGiPS--GIGKL~~Levf~aanN-~LElVPE-------glcRC~kL~kL~L 346 (1255)
T KOG0444|consen 278 NQLTVLPDAVCK-LTKLTKLYANNNKLTFEGIPS--GIGKLIQLEVFHAANN-KLELVPE-------GLCRCVKLQKLKL 346 (1255)
T ss_pred chhccchHHHhh-hHHHHHHHhccCcccccCCcc--chhhhhhhHHHHhhcc-ccccCch-------hhhhhHHHHHhcc
Confidence 555556666555 78999999977753 233443 3478999999998876 4554432 4567899999999
Q ss_pred cCcccccccccCCCCccccCCccEEEEecCCCccccCCchhhhhcccceec
Q 048755 618 RDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTLEL 668 (674)
Q Consensus 618 ~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~l~~L~~L~l 668 (674)
. |..|-.+ |..+.-+|-|++|++...|+|.--|..--.-.+|+.-+|
T Consensus 347 ~-~NrLiTL---PeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 347 D-HNRLITL---PEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred c-ccceeec---hhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 6 4567777 777888999999999999999655433222355555444
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=7.9e-21 Score=181.40 Aligned_cols=205 Identities=23% Similarity=0.296 Sum_probs=113.9
Q ss_pred ccccceeEeeccccccCCCCCc-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEc
Q 048755 306 TLKVCTAISLFNTNISELPQGF-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSL 384 (674)
Q Consensus 306 ~~~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l 384 (674)
....+..+..+.+.+..+|+.+ ...+++.++.+.|....+++++ +.+..|..|+..+|.+..+|..++.+..|..+++
T Consensus 89 ~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i-~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~ 167 (565)
T KOG0472|consen 89 ELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSI-GRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDL 167 (565)
T ss_pred HHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchH-HHHhhhhhhhccccccccCchHHHHHHHHHHhhc
Confidence 3344455555555555555555 5556666666666555555553 4555556666666666666666666666666666
Q ss_pred CCcCCCC-cccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcccc
Q 048755 385 DFCILGD-IAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGK 463 (674)
Q Consensus 385 ~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 463 (674)
.++.+.. |+..-.++.|++||...|-++.+|+.++.+.+|..|++..| .+..+|. ++.+..|.+|+++.|.+..-+
T Consensus 168 ~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPe--f~gcs~L~Elh~g~N~i~~lp 244 (565)
T KOG0472|consen 168 EGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRN-KIRFLPE--FPGCSLLKELHVGENQIEMLP 244 (565)
T ss_pred cccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhc-ccccCCC--CCccHHHHHHHhcccHHHhhH
Confidence 6665555 44433466666666666666666666666666666666655 3444442 444444444444444332111
Q ss_pred cc-----------ccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEE
Q 048755 464 VG-----------GVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISI 515 (674)
Q Consensus 464 ~~-----------~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~ 515 (674)
.. ....++-...+.++..+++|..|++++|++..+|..++++ +|+.|.+.+
T Consensus 245 ae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 245 AEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred HHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcC
Confidence 10 0112223445556666666777777777777777777666 666666544
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.65 E-value=6.8e-19 Score=168.30 Aligned_cols=240 Identities=24% Similarity=0.307 Sum_probs=184.1
Q ss_pred cccccceeEeeccccccCCCCCc-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEE
Q 048755 305 DTLKVCTAISLFNTNISELPQGF-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLS 383 (674)
Q Consensus 305 ~~~~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 383 (674)
.....++.+.++++.+.++|+.+ .+..+..++++.|....+|... .....|+.|+.+++.+.++|++++.+..|..++
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhhh
Confidence 34456777888888888888777 7778888888888888888775 678888889999998889999999999999988
Q ss_pred cCCcCCCC-cccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccc
Q 048755 384 LDFCILGD-IAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWG 462 (674)
Q Consensus 384 l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 462 (674)
..+|.+.. |.+++.+.+|..+++.+|++..+|+..-+|+.|++|+...| .++.+|++ ++.+.+|+-|++..|.+.
T Consensus 144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~-lg~l~~L~~LyL~~Nki~-- 219 (565)
T KOG0472|consen 144 ATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPE-LGGLESLELLYLRRNKIR-- 219 (565)
T ss_pred ccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChh-hcchhhhHHHHhhhcccc--
Confidence 88888877 78888889999999999998888877667889999988877 67888887 888999998888888762
Q ss_pred cccccCCcccccchhhhcCCCCccEEEeeeccCCCCCccc-ccccCccEEEEEEcccccccCCCCccc-ceeEEeecCCC
Q 048755 463 KVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDL-SFFKMLQRYRISIGYDWWSVGPWDGIS-RKFKLKLTNGA 540 (674)
Q Consensus 463 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 540 (674)
++.+++.+..|..+++..|.++.+|+.. +.++++..|++..+.- ..+|+-.... ++.+|++++..
T Consensus 220 ------------~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 220 ------------FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred ------------cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccCCc
Confidence 3347778888888998888888888876 4788888888876543 3444433222 46667777655
Q ss_pred ceecchhHHhhhccccEEEecCCC
Q 048755 541 NICLNEGHIMQLKGIEDLTLDGLP 564 (674)
Q Consensus 541 ~~~~~~~~~~~l~~L~~L~L~~~~ 564 (674)
....+.... .+ +|+.|.+.|++
T Consensus 287 is~Lp~sLg-nl-hL~~L~leGNP 308 (565)
T KOG0472|consen 287 ISSLPYSLG-NL-HLKFLALEGNP 308 (565)
T ss_pred cccCCcccc-cc-eeeehhhcCCc
Confidence 544444433 34 67777777765
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=6.5e-18 Score=177.96 Aligned_cols=333 Identities=22% Similarity=0.241 Sum_probs=188.7
Q ss_pred ceeEeeccccccCCCCCc-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcC
Q 048755 310 CTAISLFNTNISELPQGF-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCI 388 (674)
Q Consensus 310 ~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~ 388 (674)
+.+|+++++.+..+|..+ .+.+|+.|+++.|.+...|.+ ..++++|++|.|.+|....+|.++..+++|++|+++.|.
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccchhhcCchhHHhhhcccccccchhc
Confidence 677777777777777776 677788888888777777644 477888888888888877888888888888888887775
Q ss_pred CCC-cccccCc----------------------------------------CCccE-EecCCCCchhch-Hh--------
Q 048755 389 LGD-IAIIGDL----------------------------------------KKLEI-LTLRGSDMEKLV-EE-------- 417 (674)
Q Consensus 389 ~~~-~~~~~~l----------------------------------------~~L~~-L~l~~~~~~~lp-~~-------- 417 (674)
+.. |..+..+ .+|++ |+++.|.+..+- ..
T Consensus 126 f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~ 205 (1081)
T KOG0618|consen 126 FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLH 205 (1081)
T ss_pred cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhh
Confidence 443 2211111 12222 555554333100 00
Q ss_pred -----h----cCCC----------------------CCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccc
Q 048755 418 -----M----GELT----------------------QLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGG 466 (674)
Q Consensus 418 -----~----~~l~----------------------~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 466 (674)
+ -.-+ +|++++++++ .+..+| +.++.+.+|+.+.+..|.+
T Consensus 206 c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp-~wi~~~~nle~l~~n~N~l------- 276 (1081)
T KOG0618|consen 206 CERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLP-EWIGACANLEALNANHNRL------- 276 (1081)
T ss_pred hhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchh-hhhcch-HHHHhcccceEecccchhH-------
Confidence 0 0111 2233333332 233334 3345555555555544443
Q ss_pred cCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCc--cc-ceeEEeecCCCcee
Q 048755 467 VDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDG--IS-RKFKLKLTNGANIC 543 (674)
Q Consensus 467 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~-~~~~l~~~~~~~~~ 543 (674)
...+..+...++|+.|.+..|....+|+.....++|++|++..+. ...+|+..- .. .+..+.........
T Consensus 277 ------~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~ 349 (1081)
T KOG0618|consen 277 ------VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLST 349 (1081)
T ss_pred ------HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccc
Confidence 334556666777777777777778888888888888888886443 234443110 00 11111111001111
Q ss_pred cchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccc
Q 048755 544 LNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNL 623 (674)
Q Consensus 544 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L 623 (674)
.+.--...++.|+.|++.++......... ..++++||.|+++++ .+..+++. ....++.||+|++++- +|
T Consensus 350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~--l~~~~hLKVLhLsyN-rL~~fpas------~~~kle~LeeL~LSGN-kL 419 (1081)
T KOG0618|consen 350 LPSYEENNHAALQELYLANNHLTDSCFPV--LVNFKHLKVLHLSYN-RLNSFPAS------KLRKLEELEELNLSGN-KL 419 (1081)
T ss_pred cccccchhhHHHHHHHHhcCcccccchhh--hccccceeeeeeccc-ccccCCHH------HHhchHHhHHHhcccc-hh
Confidence 11111123466777777777654444332 366788888888776 44444332 2334566777777662 33
Q ss_pred cccc--------------------cCCCCccccCCccEEEEecCCCccccCCchhh-hhcccceecccc
Q 048755 624 EEIC--------------------CGPLTAESFSKLKTIRVEGCDKLKNVFPLVIE-LTQLRTLELKNV 671 (674)
Q Consensus 624 ~~~~--------------------~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~-l~~L~~L~l~~c 671 (674)
+.++ ..| .+..+|.|+.++++ |++|..+...... -|+|++|++++=
T Consensus 420 ~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 420 TTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred hhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCC
Confidence 3332 113 56678999999996 6788776332222 379999999874
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.3e-17 Score=140.98 Aligned_cols=170 Identities=24% Similarity=0.391 Sum_probs=142.4
Q ss_pred ccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCC-cccccCc
Q 048755 320 ISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGD-IAIIGDL 398 (674)
Q Consensus 320 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~l 398 (674)
+..+|..+.+.+...|.++.|....+++.+ ..+.+|.+|++.+|.++++|.+++.++.|+.|++..|++.. |.++|.+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 445666777778888888888888777774 78899999999999999999999999999999999888776 8889999
Q ss_pred CCccEEecCCCCch--hchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccch
Q 048755 399 KKLEILTLRGSDME--KLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASL 476 (674)
Q Consensus 399 ~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 476 (674)
+.|+.||+.+|++. .+|-.+..|+.|+.|+++.| ....+|++ ++++++||.|.+.+|.+ ...+
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndl-------------l~lp 166 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDL-------------LSLP 166 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCch-------------hhCc
Confidence 99999999998776 78877888888999999887 45677877 89999999999888865 4567
Q ss_pred hhhcCCCCccEEEeeeccCCCCCcccccc
Q 048755 477 DELNNLSKLTSLEILIQDEKTLPRDLSFF 505 (674)
Q Consensus 477 ~~l~~l~~L~~L~l~~~~~~~~~~~l~~~ 505 (674)
.+++.+++|+.|.+.+|+...+|+.+..+
T Consensus 167 keig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 78889999999999999988888876543
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=7.3e-17 Score=170.15 Aligned_cols=230 Identities=20% Similarity=0.250 Sum_probs=132.7
Q ss_pred cCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchh
Q 048755 398 LKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLD 477 (674)
Q Consensus 398 l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 477 (674)
-.+|++++++.+++..+|..++.+.+|..+.+.+| .+..+|.. +....+|+.|.+..|.+ ...+.
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~r-i~~~~~L~~l~~~~nel-------------~yip~ 304 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHN-RLVALPLR-ISRITSLVSLSAAYNEL-------------EYIPP 304 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccch-hHHhhHHH-HhhhhhHHHHHhhhhhh-------------hhCCC
Confidence 46788889999999999988999999999999988 45777766 77888888888877765 34455
Q ss_pred hhcCCCCccEEEeeeccCCCCCccccc-cc-CccEEEEEEcccccccCCCCccc--ceeEEeecCCCceecchhHHhhhc
Q 048755 478 ELNNLSKLTSLEILIQDEKTLPRDLSF-FK-MLQRYRISIGYDWWSVGPWDGIS--RKFKLKLTNGANICLNEGHIMQLK 553 (674)
Q Consensus 478 ~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~-~L~~L~l~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~l~ 553 (674)
.++.++.|++|++..|.+..+|+.+-. .. +|+.|..+.. .....|.+.+.. .+..|.+.++.....--.....++
T Consensus 305 ~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~ 383 (1081)
T KOG0618|consen 305 FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN-KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK 383 (1081)
T ss_pred cccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc-cccccccccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence 666788899999988888887764311 11 1333433321 122233222211 222233322222111111222345
Q ss_pred cccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeec----------------CCCCCCCCCCCCccccccc
Q 048755 554 GIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDT----------------MDCTPAPTIAFPLLESLFL 617 (674)
Q Consensus 554 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~----------------~~~~~~~~~~~~~L~~L~l 617 (674)
+|+.|+|+.+. +...+.. ...+++.|+.|.++|+ +++.+++. -..|| ....++.|+.+++
T Consensus 384 hLKVLhLsyNr-L~~fpas-~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 384 HLKVLHLSYNR-LNSFPAS-KLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDL 459 (1081)
T ss_pred ceeeeeecccc-cccCCHH-HHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEec
Confidence 55555555442 2212211 1234555555555554 33333321 01233 5566788888888
Q ss_pred cCcccccccccCCCCccccCCccEEEEecCCCc
Q 048755 618 RDLRNLEEICCGPLTAESFSKLKTIRVEGCDKL 650 (674)
Q Consensus 618 ~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L 650 (674)
+ |.+|+.+.. +.. ...|.||+|+++|...+
T Consensus 460 S-~N~L~~~~l-~~~-~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 460 S-CNNLSEVTL-PEA-LPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred c-cchhhhhhh-hhh-CCCcccceeeccCCccc
Confidence 6 566765521 111 11289999999998763
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=5e-14 Score=153.66 Aligned_cols=252 Identities=20% Similarity=0.166 Sum_probs=152.1
Q ss_pred eEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCC
Q 048755 312 AISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGD 391 (674)
Q Consensus 312 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 391 (674)
.|+++.+.+..+|..+. ++|+.|.+..|.+..+|. ..++|++|++++|.++.+|.. ..+|++|++++|.+..
T Consensus 205 ~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~ 276 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTH 276 (788)
T ss_pred EEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhh
Confidence 45666666777776553 467777777777776654 246788888888887777643 3577788888777665
Q ss_pred cccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcc
Q 048755 392 IAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGER 471 (674)
Q Consensus 392 ~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 471 (674)
++. .+.+|+.|++++|+++.+|. .+++|++|++++| .+..+|.. ..+|+.|++.+|.+..
T Consensus 277 Lp~--lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~~---------- 336 (788)
T PRK15387 277 LPA--LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTS---------- 336 (788)
T ss_pred hhh--chhhcCEEECcCCccccccc---cccccceeECCCC-ccccCCCC----cccccccccccCcccc----------
Confidence 332 23567778888888777775 3467888888877 44455431 2346667776665521
Q ss_pred cccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecchhHHhh
Q 048755 472 RNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQ 551 (674)
Q Consensus 472 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 551 (674)
.+ . -..+|+.|++++|.+..+|.. .++|+.|.++.+... .+|. .
T Consensus 337 ---LP-~--lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~--------------------------l 380 (788)
T PRK15387 337 ---LP-T--LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPA--------------------------L 380 (788)
T ss_pred ---cc-c--cccccceEecCCCccCCCCCC---Ccccceehhhccccc-cCcc--------------------------c
Confidence 11 0 114677888888777777653 245666666543211 1111 1
Q ss_pred hccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCC
Q 048755 552 LKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPL 631 (674)
Q Consensus 552 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 631 (674)
+.+|+.|++.+|. ++.++. ..++|+.|+++++ .++.++. .+.+|+.|+++++ .++.+ |.
T Consensus 381 ~~~L~~LdLs~N~-Lt~LP~-----l~s~L~~LdLS~N-~LssIP~----------l~~~L~~L~Ls~N-qLt~L---P~ 439 (788)
T PRK15387 381 PSGLKELIVSGNR-LTSLPV-----LPSELKELMVSGN-RLTSLPM----------LPSGLLSLSVYRN-QLTRL---PE 439 (788)
T ss_pred ccccceEEecCCc-ccCCCC-----cccCCCEEEccCC-cCCCCCc----------chhhhhhhhhccC-ccccc---Ch
Confidence 2456777776664 233332 1356777777776 3444321 1345677777663 35666 45
Q ss_pred CccccCCccEEEEecCC
Q 048755 632 TAESFSKLKTIRVEGCD 648 (674)
Q Consensus 632 ~~~~l~~L~~L~i~~C~ 648 (674)
.+..+++|+.|++++++
T Consensus 440 sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 440 SLIHLSSETTVNLEGNP 456 (788)
T ss_pred HHhhccCCCeEECCCCC
Confidence 56667777777777754
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=1.8e-13 Score=150.36 Aligned_cols=176 Identities=19% Similarity=0.268 Sum_probs=109.4
Q ss_pred ceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCC
Q 048755 310 CTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCIL 389 (674)
Q Consensus 310 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 389 (674)
...|.+.+..+..+|..+ .++|+.|++++|.+..+|...+ .+|++|++++|.++.+|..+. .+|+.|++++|.+
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 345666666777777654 2567888888887777776543 478888888888877776543 4678888888777
Q ss_pred CC-cccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccC
Q 048755 390 GD-IAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVD 468 (674)
Q Consensus 390 ~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 468 (674)
.. |..+ ..+|+.|++++|+++.+|..+. ++|++|++++| .++.+|.. +. ++|+.|++.+|.+..
T Consensus 254 ~~LP~~l--~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~------- 318 (754)
T PRK15370 254 TELPERL--PSALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLTA------- 318 (754)
T ss_pred CcCChhH--hCCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCcccc-------
Confidence 66 3333 2467788887777777776443 47777777777 45555543 21 356666666665421
Q ss_pred CcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEc
Q 048755 469 GERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIG 516 (674)
Q Consensus 469 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~ 516 (674)
.+..+ .++|+.|++.+|....+|..+. ++|+.|+++.|
T Consensus 319 ------LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N 356 (754)
T PRK15370 319 ------LPETL--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKN 356 (754)
T ss_pred ------CCccc--cccceeccccCCccccCChhhc--CcccEEECCCC
Confidence 11111 1456666666666666665442 45666655543
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=7.1e-16 Score=130.58 Aligned_cols=153 Identities=25% Similarity=0.404 Sum_probs=139.7
Q ss_pred ccccccceeEeeccccccCCCCCc-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEE
Q 048755 304 KDTLKVCTAISLFNTNISELPQGF-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTL 382 (674)
Q Consensus 304 ~~~~~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L 382 (674)
--.++++++|.++++.+..+|+.+ .+.+|++|++++|++..+|.++ +.++.||.|++.-|.+..+|..|+.++-|+.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 344678899999999999999988 9999999999999999999885 89999999999999999999999999999999
Q ss_pred EcCCcCCCC---cccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 383 SLDFCILGD---IAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 383 ~l~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
|+.+|++.+ |..+..+..|+.|+++.|.++-+|..++++++||.|.+..| .+-++|.+ ++.++.|++|++.+|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhccccee
Confidence 999998866 67788889999999999999999999999999999999998 55678887 89999999999999876
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=3.3e-13 Score=147.33 Aligned_cols=256 Identities=18% Similarity=0.104 Sum_probs=183.7
Q ss_pred CCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCCcccccCcCCccEEecCCC
Q 048755 330 PQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLRGS 409 (674)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 409 (674)
.+-..|+++.+....+|+.+. .+|+.|++.+|.++.+|.. +++|++|++++|.++.++. ...+|+.|++.+|
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~---~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~N 272 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSN 272 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh---cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccC--cccccceeeccCC
Confidence 345578888888888887653 4789999999999988853 5789999999998887443 2478999999999
Q ss_pred CchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCccEEE
Q 048755 410 DMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLE 489 (674)
Q Consensus 410 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 489 (674)
.+..+|.. ..+|+.|++++| .+..+|. ..++|+.|++++|.+... +. -..+|+.|+
T Consensus 273 ~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~----~p~~L~~LdLS~N~L~~L-------------p~---lp~~L~~L~ 328 (788)
T PRK15387 273 PLTHLPAL---PSGLCKLWIFGN-QLTSLPV----LPPGLQELSVSDNQLASL-------------PA---LPSELCKLW 328 (788)
T ss_pred chhhhhhc---hhhcCEEECcCC-ccccccc----cccccceeECCCCccccC-------------CC---Ccccccccc
Confidence 98888863 357888999888 5566664 246799999988876211 11 124577888
Q ss_pred eeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecchhHHhhhccccEEEecCCCCcccc
Q 048755 490 ILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNV 569 (674)
Q Consensus 490 l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 569 (674)
+.+|....+|.. ..+|+.|+++++... .+ |. .+++|+.|.+.++. +..+
T Consensus 329 Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls-~L----------------------P~----lp~~L~~L~Ls~N~-L~~L 377 (788)
T PRK15387 329 AYNNQLTSLPTL---PSGLQELSVSDNQLA-SL----------------------PT----LPSELYKLWAYNNR-LTSL 377 (788)
T ss_pred cccCcccccccc---ccccceEecCCCccC-CC----------------------CC----CCcccceehhhccc-cccC
Confidence 888887777752 247888888754321 11 11 13678888888764 4444
Q ss_pred ccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCccccCCccEEEEecCCC
Q 048755 570 LCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDK 649 (674)
Q Consensus 570 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~ 649 (674)
+. ..++|+.|+++++ .++.++ ..+++|+.|+++++ .++.+|. ...+|+.|++++ ++
T Consensus 378 P~-----l~~~L~~LdLs~N-~Lt~LP----------~l~s~L~~LdLS~N-~LssIP~------l~~~L~~L~Ls~-Nq 433 (788)
T PRK15387 378 PA-----LPSGLKELIVSGN-RLTSLP----------VLPSELKELMVSGN-RLTSLPM------LPSGLLSLSVYR-NQ 433 (788)
T ss_pred cc-----cccccceEEecCC-cccCCC----------CcccCCCEEEccCC-cCCCCCc------chhhhhhhhhcc-Cc
Confidence 32 2468999999887 455442 12468999999997 4777742 135789999998 56
Q ss_pred ccccCCchhhhhcccceeccccc
Q 048755 650 LKNVFPLVIELTQLRTLELKNVF 672 (674)
Q Consensus 650 L~~l~~~~~~l~~L~~L~l~~c~ 672 (674)
++.+|..+..+++|+.|++++.+
T Consensus 434 Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 434 LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ccccChHHhhccCCCeEECCCCC
Confidence 99998887779999999998753
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.43 E-value=8.3e-14 Score=155.33 Aligned_cols=317 Identities=22% Similarity=0.281 Sum_probs=214.8
Q ss_pred cccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcc--cCCCCc-ccccccCCcEEEcCCc-CCCC-cc
Q 048755 319 NISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMH--LLALPS-SLGLLQNLQTLSLDFC-ILGD-IA 393 (674)
Q Consensus 319 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~--~~~lp~-~~~~l~~L~~L~l~~~-~~~~-~~ 393 (674)
.....|+.......|.+.+.+|....++... .++.|+.|-+.++. +..++. .|..++.|++||+++| .+.. |.
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred CccccccccchhheeEEEEeccchhhccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 3344666666678888888888877777653 45689999999886 566654 4778999999999988 3444 89
Q ss_pred cccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccc
Q 048755 394 IIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRN 473 (674)
Q Consensus 394 ~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 473 (674)
.++.|.+|++|+++++.+..+|.+++++++|.+|++..+......+ ++...|.+|++|.+..... ....
T Consensus 590 ~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~----------~~~~ 658 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSAL----------SNDK 658 (889)
T ss_pred HHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeecccc----------ccch
Confidence 9999999999999999999999999999999999999987777775 4367799999999865431 2345
Q ss_pred cchhhhcCCCCccEEEeeeccCCCCCcccccccCccEE----EEEEcccccccCCCCcccceeEEeecCCCceec-----
Q 048755 474 ASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRY----RISIGYDWWSVGPWDGISRKFKLKLTNGANICL----- 544 (674)
Q Consensus 474 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L----~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----- 544 (674)
..+.++..+++|+.+.+..... .+-..+..+++|.++ .+..+......+.+..+..+..|.+.++.....
T Consensus 659 ~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~ 737 (889)
T KOG4658|consen 659 LLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWE 737 (889)
T ss_pred hhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccc
Confidence 5667778888888888865544 222223333444433 222223333344455555666666665444221
Q ss_pred chhHHh-hhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCC---CCCCCCccccc-cccC
Q 048755 545 NEGHIM-QLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPA---PTIAFPLLESL-FLRD 619 (674)
Q Consensus 545 ~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~---~~~~~~~L~~L-~l~~ 619 (674)
...... .|+++..+.+.+|....+.... ...|+|+.|.+..|..++++.+....... ....|++++.+ .+.+
T Consensus 738 ~~~~~~~~f~~l~~~~~~~~~~~r~l~~~---~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~ 814 (889)
T KOG4658|consen 738 ESLIVLLCFPNLSKVSILNCHMLRDLTWL---LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCS 814 (889)
T ss_pred cccchhhhHHHHHHHHhhccccccccchh---hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeec
Confidence 111111 2667777777777766655432 34689999999999888876543211110 13456677777 4666
Q ss_pred cccccccccCCCCccccCCccEEEEecCCCccccCC
Q 048755 620 LRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFP 655 (674)
Q Consensus 620 c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~ 655 (674)
.+.+..+...+.+ +++|+.+.+..||+++.+|.
T Consensus 815 l~~l~~i~~~~l~---~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 815 LGGLPQLYWLPLS---FLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred CCCCceeEecccC---ccchhheehhcCcccccCcc
Confidence 6666666444543 35599999999999887743
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.33 E-value=3.4e-12 Score=140.42 Aligned_cols=181 Identities=17% Similarity=0.248 Sum_probs=142.5
Q ss_pred ccccceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcC
Q 048755 306 TLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLD 385 (674)
Q Consensus 306 ~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 385 (674)
.+..++.|++++|.+..+|..+. .+|+.|++++|.+..+|... ..+|+.|++++|.+..+|..+. .+|++|+++
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITELPERLP--SALQSLDLF 270 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhh---hccccEEECcCCccCcCChhHh--CCCCEEECc
Confidence 34678999999999999987664 69999999999988887654 3479999999999999988764 589999999
Q ss_pred CcCCCC-cccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccc
Q 048755 386 FCILGD-IAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKV 464 (674)
Q Consensus 386 ~~~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 464 (674)
+|.+.. |..+. .+|++|++++|+++.+|..+. ++|++|++++| .+..+|.. + .++|+.|.+.+|.+..
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~-l--~~sL~~L~Ls~N~Lt~--- 339 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN-SLTALPET-L--PPGLKTLEAGENALTS--- 339 (754)
T ss_pred CCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC-ccccCCcc-c--cccceeccccCCcccc---
Confidence 998887 44343 589999999999999886543 47899999998 45566654 2 3689999998887621
Q ss_pred cccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcc
Q 048755 465 GGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGY 517 (674)
Q Consensus 465 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~ 517 (674)
.+..+ .++|+.|++++|....+|..+ .++|+.|++++|.
T Consensus 340 ----------LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 340 ----------LPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNA 378 (754)
T ss_pred ----------CChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCc
Confidence 22222 268999999999988888765 3688999887664
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.26 E-value=2.3e-13 Score=130.66 Aligned_cols=145 Identities=21% Similarity=0.356 Sum_probs=120.3
Q ss_pred eEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcEEEcCC-cCC
Q 048755 312 AISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQTLSLDF-CIL 389 (674)
Q Consensus 312 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~-~~~ 389 (674)
.+.-++.++.++|..+- +....+.+..|.+..+|+..|+.+++||.|||++|.|+.+ |..|..+.+|..|-+.+ |++
T Consensus 50 ~VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred eEEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 34445566777776552 4567789999999999999999999999999999999988 88899999988777766 788
Q ss_pred CCc--ccccCcCCccEEecCCCCchhch-HhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCC
Q 048755 390 GDI--AIIGDLKKLEILTLRGSDMEKLV-EEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSP 458 (674)
Q Consensus 390 ~~~--~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 458 (674)
+++ ..++.|..|+.|.+.-|++.-++ ..+..+++|..|.+..| ....++...+..+..++++.+..++
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 883 56889999999999999988665 56899999999999987 6667777668889999998876665
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.12 E-value=3.3e-12 Score=122.89 Aligned_cols=258 Identities=18% Similarity=0.185 Sum_probs=164.6
Q ss_pred cccccceeEeeccccccCCCCCc--CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecC-cccCCCCc-ccccccCCc
Q 048755 305 DTLKVCTAISLFNTNISELPQGF--ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTE-MHLLALPS-SLGLLQNLQ 380 (674)
Q Consensus 305 ~~~~~~~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~-~~~~~lp~-~~~~l~~L~ 380 (674)
.-+...+.+.+..|.+..+|+.. .+++||.|+++.|.+..+.+..|.+++.|-.|-+.+ |+|+.+|+ .|+.|..|+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 44566778899999999999886 999999999999999999999999999988877766 89999985 588999999
Q ss_pred EEEcCCcCCCC--cccccCcCCccEEecCCCCchhchH-hhcCCCCCcEEeCCCCCCC------------CCCChhhhhC
Q 048755 381 TLSLDFCILGD--IAIIGDLKKLEILTLRGSDMEKLVE-EMGELTQLRLLDLSYCFNL------------QVIPPNVISS 445 (674)
Q Consensus 381 ~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~------------~~~~~~~l~~ 445 (674)
-|.+..|.+.- ...+..+++|..|.+..|.+..++. .+..+.+++++.+..++.. ...|.+ .+.
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsg 222 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSG 222 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-ccc
Confidence 99999887765 3678889999999999999998886 6788889998887766421 111111 222
Q ss_pred CCCCCeEEeccCCCccccc--------c----ccCC--cccccchhhhcCCCCccEEEeeeccCCCCC-cccccccCccE
Q 048755 446 LSRLEELYIGQSPIMWGKV--------G----GVDG--ERRNASLDELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQR 510 (674)
Q Consensus 446 l~~L~~L~l~~~~~~~~~~--------~----~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~ 510 (674)
.+......+....+..... . .... .....-...++++++|++|++++|.+..+- .++....+++.
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 2222222222111100000 0 0000 000111234678889999999988876663 46677778888
Q ss_pred EEEEEcccc-cccCCCCcccceeEEeecCCCceecchhHHhhhccccEEEecCC
Q 048755 511 YRISIGYDW-WSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGL 563 (674)
Q Consensus 511 L~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 563 (674)
|.+..+..- ..-..+.++..++.|++.++......+..+..+.+|..|.|-++
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 887644321 00111222334444444443333333333333444444444433
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.08 E-value=4.4e-11 Score=122.03 Aligned_cols=158 Identities=20% Similarity=0.136 Sum_probs=74.2
Q ss_pred cCCCcceEEEecCcccCC-------CCcccccccCCcEEEcCCcCCCC--cccccCcC---CccEEecCCCCch-----h
Q 048755 351 TGMTELRVLDFTEMHLLA-------LPSSLGLLQNLQTLSLDFCILGD--IAIIGDLK---KLEILTLRGSDME-----K 413 (674)
Q Consensus 351 ~~~~~Lr~L~l~~~~~~~-------lp~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~---~L~~L~l~~~~~~-----~ 413 (674)
...+.|+.|+++++.+.. ++..+..+.+|++|++++|.+.. +..+..+. +|++|++++|++. .
T Consensus 48 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~ 127 (319)
T cd00116 48 RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRL 127 (319)
T ss_pred hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHH
Confidence 344455555555554431 12334445566666666655542 22222222 2666666666544 1
Q ss_pred chHhhcCC-CCCcEEeCCCCCCCCCCCh---hhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCccEEE
Q 048755 414 LVEEMGEL-TQLRLLDLSYCFNLQVIPP---NVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLE 489 (674)
Q Consensus 414 lp~~~~~l-~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 489 (674)
+...+..+ ++|+.|++++|........ ..+..+++|++|++.+|.+.. .........+..+++|+.|+
T Consensus 128 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--------~~~~~l~~~l~~~~~L~~L~ 199 (319)
T cd00116 128 LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD--------AGIRALAEGLKANCNLEVLD 199 (319)
T ss_pred HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch--------HHHHHHHHHHHhCCCCCEEe
Confidence 22334444 5666666666643211110 113445566666666655411 00111223344445666666
Q ss_pred eeeccCC-----CCCcccccccCccEEEEEEc
Q 048755 490 ILIQDEK-----TLPRDLSFFKMLQRYRISIG 516 (674)
Q Consensus 490 l~~~~~~-----~~~~~l~~~~~L~~L~l~~~ 516 (674)
++++... .++..+..+++|+.|+++.|
T Consensus 200 L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 200 LNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred ccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 6655432 12233445566666666544
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.06 E-value=2.6e-11 Score=123.72 Aligned_cols=42 Identities=29% Similarity=0.316 Sum_probs=24.1
Q ss_pred hhcCCCcceEEEecCcccC-----CCCcccccccCCcEEEcCCcCCC
Q 048755 349 IFTGMTELRVLDFTEMHLL-----ALPSSLGLLQNLQTLSLDFCILG 390 (674)
Q Consensus 349 ~~~~~~~Lr~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~ 390 (674)
.+..+.+|++|+++++.+. .++..+...++|++++++++.+.
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence 3445566777777776653 23444555556666666665443
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.04 E-value=3.1e-08 Score=98.09 Aligned_cols=187 Identities=16% Similarity=0.192 Sum_probs=116.2
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHH----HHHHcCCcEEE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLL----EQLKKETKILI 76 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~----~~l~~~kr~Ll 76 (674)
.+|+||||+++.+++...... + .++|+ +....+..++++.|+..++.+............+. .....++++++
T Consensus 51 ~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vl 127 (269)
T TIGR03015 51 EVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRALL 127 (269)
T ss_pred CCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 379999999999999876331 1 12333 33345778999999999987654433333233332 33346788999
Q ss_pred EEeCCCCcc--chhhccC--CcC-CCCCCeEEEEEeCChhhh--h------ccCCCcceEecCCCCHHHHHHHHHHHhC-
Q 048755 77 ILDDIWGSL--DLEAIGI--PVA-DDNGGCKVLLTARSQDVL--S------CKMDCQQNFVVDVLNEKEAWSLFKKMTG- 142 (674)
Q Consensus 77 VlDdv~~~~--~~~~l~~--~~~-~~~~gs~ilvTtr~~~~~--~------~~~~~~~~~~l~~L~~~~~~~lf~~~~~- 142 (674)
|+||++... .++.+.. ... .......|++|....-.. . ........+++++++.+|..+++...+.
T Consensus 128 iiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~ 207 (269)
T TIGR03015 128 VVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLER 207 (269)
T ss_pred EEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHH
Confidence 999998763 3444321 111 112223445555432110 0 0012245678999999999999987763
Q ss_pred --CCCCCCchhHHHHHHHHHhCCchhhHHHHHHHHh------cC---ChHHHHHHHHHh
Q 048755 143 --DCIENGELKSVATEVVKECAGLPIAIVPVAKALK------NK---SLYEWRNALRQL 190 (674)
Q Consensus 143 --~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~------~~---~~~~w~~~l~~l 190 (674)
......-..+..+.|++.++|.|..++.++..+. +. +.+.++.++..+
T Consensus 208 ~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 208 AGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred cCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 1112234468899999999999999999998873 11 555555555543
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=3.4e-10 Score=101.25 Aligned_cols=128 Identities=23% Similarity=0.316 Sum_probs=40.5
Q ss_pred CCcceEEEecCcccCCCCcccc-cccCCcEEEcCCcCCCCcccccCcCCccEEecCCCCchhchHhh-cCCCCCcEEeCC
Q 048755 353 MTELRVLDFTEMHLLALPSSLG-LLQNLQTLSLDFCILGDIAIIGDLKKLEILTLRGSDMEKLVEEM-GELTQLRLLDLS 430 (674)
Q Consensus 353 ~~~Lr~L~l~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L~l~ 430 (674)
...++.|+|+++.|+.+. .++ .+.+|+.|++++|.++.+..+..+++|++|++++|.++++...+ ..+++|++|+++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 445566666666666543 343 45666666666666666666666777777777777777665444 356777777777
Q ss_pred CCCCCCCCCh-hhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCccEEEee
Q 048755 431 YCFNLQVIPP-NVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEIL 491 (674)
Q Consensus 431 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 491 (674)
+|. +..+.. ..+..+++|+.|++.+|++.. ....-..-+..+|+|+.||-.
T Consensus 97 ~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~---------~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 97 NNK-ISDLNELEPLSSLPKLRVLSLEGNPVCE---------KKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TS----SCCCCGGGGG-TT--EEE-TT-GGGG---------STTHHHHHHHH-TT-SEETTE
T ss_pred CCc-CCChHHhHHHHcCCCcceeeccCCcccc---------hhhHHHHHHHHcChhheeCCE
Confidence 663 222211 225667777777777776521 112223334455666666644
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.94 E-value=3.3e-11 Score=121.40 Aligned_cols=191 Identities=21% Similarity=0.259 Sum_probs=149.8
Q ss_pred ccceeEeeccccccCCCCCc-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCC
Q 048755 308 KVCTAISLFNTNISELPQGF-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDF 386 (674)
Q Consensus 308 ~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~ 386 (674)
..-...+++.|.+.++|..+ .|..|..+.+..|.+..++.. +..+..|.+|+|+.|.++.+|..++.|+ |+.|-+++
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 34456778888888888877 677788888888887777766 4788889999999999988888887665 88889998
Q ss_pred cCCCC-cccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcccccc
Q 048755 387 CILGD-IAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVG 465 (674)
Q Consensus 387 ~~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 465 (674)
|+++. |..++.+..|..|+.+.|.+..+|..++.+.+|+.|++..| .+..+|++ +..|+ |..|+++.|++
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~Lp-Li~lDfScNki------ 223 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCSLP-LIRLDFSCNKI------ 223 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhCCc-eeeeecccCce------
Confidence 88877 78888888999999999999999988999999999988887 55667776 56554 88888888865
Q ss_pred ccCCcccccchhhhcCCCCccEEEeeeccCCCCCccccc---ccCccEEEEEEc
Q 048755 466 GVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSF---FKMLQRYRISIG 516 (674)
Q Consensus 466 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~---~~~L~~L~l~~~ 516 (674)
...+..+.+|+.|++|-+.+|...+=|..+.. ..-.+.|.+..|
T Consensus 224 -------s~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 224 -------SYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -------eecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 45677888899999999998887776666532 233455666555
No 29
>PF05729 NACHT: NACHT domain
Probab=98.93 E-value=7.1e-09 Score=94.44 Aligned_cols=135 Identities=21% Similarity=0.278 Sum_probs=86.0
Q ss_pred CCCcHHHHHHHHHHhhhhccc----CceEEEEEecCCcCHH---HHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcE
Q 048755 2 GGIGKTTLVKEVGRQAKENNL----FEKVISSRVSQTPQIK---EIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKI 74 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~----F~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~ 74 (674)
+|+||||++++++++...... +..++|++.+...... .+.+.|..+.........+ .........+++
T Consensus 9 ~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~ 83 (166)
T PF05729_consen 9 PGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEE-----LLQELLEKNKRV 83 (166)
T ss_pred CCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHH-----HHHHHHHcCCce
Confidence 799999999999998887654 3456777776543322 3444444443322111111 222333456899
Q ss_pred EEEEeCCCCccc---------hhhccCCcCC--CCCCeEEEEEeCChhh--hhccCCCcceEecCCCCHHHHHHHHHHHh
Q 048755 75 LIILDDIWGSLD---------LEAIGIPVAD--DNGGCKVLLTARSQDV--LSCKMDCQQNFVVDVLNEKEAWSLFKKMT 141 (674)
Q Consensus 75 LlVlDdv~~~~~---------~~~l~~~~~~--~~~gs~ilvTtr~~~~--~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 141 (674)
+||+|++++..+ +..+...+.. ...+.+++||+|.... ..........+.+.+|++++..+++.+..
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKYF 163 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHHh
Confidence 999999976532 1222212222 2458999999998766 33233445789999999999999998765
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.91 E-value=5.3e-11 Score=115.71 Aligned_cols=284 Identities=16% Similarity=0.090 Sum_probs=135.8
Q ss_pred cceEEEecCcccC---CCCcccccccCCcEEEcCCcC-CCC--ccc-ccCcCCccEEecCCC-Cchh--chHhhcCCCCC
Q 048755 355 ELRVLDFTEMHLL---ALPSSLGLLQNLQTLSLDFCI-LGD--IAI-IGDLKKLEILTLRGS-DMEK--LVEEMGELTQL 424 (674)
Q Consensus 355 ~Lr~L~l~~~~~~---~lp~~~~~l~~L~~L~l~~~~-~~~--~~~-~~~l~~L~~L~l~~~-~~~~--lp~~~~~l~~L 424 (674)
.|+.|.+.++.-. .+-..-..+++++.|.+.+|. +++ ..+ -..+++|+++++..| .++. +......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5777778777533 222334567777777777773 333 222 235677777777775 4552 22234566777
Q ss_pred cEEeCCCCCCCCCCCh-hhhhCCCCCCeEEeccCCCccccccccCCcccccchhhh-cCCCCccEEEeeecc-CCC--CC
Q 048755 425 RLLDLSYCFNLQVIPP-NVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDEL-NNLSKLTSLEILIQD-EKT--LP 499 (674)
Q Consensus 425 ~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~-~~~--~~ 499 (674)
.+|+++.|+.+..-.. ....++..++.+...+|.-. ....+... +....+.++++..+. ... +-
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~-----------~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~ 287 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL-----------ELEALLKAAAYCLEILKLNLQHCNQLTDEDLW 287 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccc-----------cHHHHHHHhccChHhhccchhhhccccchHHH
Confidence 7777777765544211 11344555555555444320 00001111 112223333332221 111 11
Q ss_pred cccccccCccEEEEEEcccccccCCCC---cccceeEEeecCCCc--eecchhHHhhhccccEEEecCCCCccccccCCC
Q 048755 500 RDLSFFKMLQRYRISIGYDWWSVGPWD---GISRKFKLKLTNGAN--ICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPG 574 (674)
Q Consensus 500 ~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~l~~~~~~~--~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 574 (674)
..-..+..|+.+..+.|.+..+.+-|. ...++..+.+.++.. ......+....++|+.+.+.+|....+....-.
T Consensus 288 ~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl 367 (483)
T KOG4341|consen 288 LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL 367 (483)
T ss_pred HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence 111445667777777666654444332 112444444433322 112222333456666666666654444422222
Q ss_pred CCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCccccCCccEEEEecCCCcccc
Q 048755 575 REVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNV 653 (674)
Q Consensus 575 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 653 (674)
..++|.|++|++++|..+++-. ...+......+..|+.+.+.+||.+++-. -.....++.|+.+++.+|..+.+-
T Consensus 368 s~~C~~lr~lslshce~itD~g--i~~l~~~~c~~~~l~~lEL~n~p~i~d~~--Le~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEG--IRHLSSSSCSLEGLEVLELDNCPLITDAT--LEHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred ccCCchhccCChhhhhhhhhhh--hhhhhhccccccccceeeecCCCCchHHH--HHHHhhCcccceeeeechhhhhhh
Confidence 3456666666666665555421 11111123445566666666666554321 112344566666666666655444
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=9.4e-11 Score=118.21 Aligned_cols=147 Identities=23% Similarity=0.411 Sum_probs=123.4
Q ss_pred cceeEeeccccccCCCCCc-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCc
Q 048755 309 VCTAISLFNTNISELPQGF-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFC 387 (674)
Q Consensus 309 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 387 (674)
.+..+.+..|.+..+|..+ .+..|..++++.|+...+|... + .--|++|-+++|+++.+|..++.+..|..|+.+.|
T Consensus 99 ~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l-C-~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n 176 (722)
T KOG0532|consen 99 SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL-C-DLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN 176 (722)
T ss_pred HHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh-h-cCcceeEEEecCccccCCcccccchhHHHhhhhhh
Confidence 3455667778888888887 7888888999999888888775 2 44589999999999999999998889999999999
Q ss_pred CCCC-cccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCc
Q 048755 388 ILGD-IAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIM 460 (674)
Q Consensus 388 ~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 460 (674)
.+.. |+.++.+.+|+.|+++.|++..+|+++..|+ |..|+++.| ++..+|.. +.+|+.|++|-+.+|++.
T Consensus 177 ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScN-kis~iPv~-fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 177 EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCN-KISYLPVD-FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccC-ceeecchh-hhhhhhheeeeeccCCCC
Confidence 8877 7888999999999999999999998888554 888998876 77888887 899999999999988874
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=2.7e-09 Score=95.54 Aligned_cols=132 Identities=25% Similarity=0.275 Sum_probs=34.5
Q ss_pred ccCCCCCcCCCCCcEEEcccCCCcccCchhhc-CCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCCc-ccc-c
Q 048755 320 ISELPQGFECPQLKYFHIRNDPSLRISDNIFT-GMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDI-AII-G 396 (674)
Q Consensus 320 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~~~-~ 396 (674)
++.++....+.+++.|++.+|.+..+.. ++ .+.+|++|++++|.++.++ .+..+++|++|++++|.++.+ ..+ .
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp ---------------------------S----TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHH
T ss_pred cccccccccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHH
Confidence 3344444455555666666655555432 22 3556666666666666553 344556666666666665553 223 2
Q ss_pred CcCCccEEecCCCCchhch--HhhcCCCCCcEEeCCCCCCCCCC--ChhhhhCCCCCCeEEe
Q 048755 397 DLKKLEILTLRGSDMEKLV--EEMGELTQLRLLDLSYCFNLQVI--PPNVISSLSRLEELYI 454 (674)
Q Consensus 397 ~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~l~~L~~L~l 454 (674)
.+++|++|++++|++..+- ..+..+++|++|++.+|+....- ..-.+..+|+|+.|+-
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 4566666666666555332 23455666666666666433221 1122456666666653
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1e-09 Score=107.58 Aligned_cols=176 Identities=16% Similarity=0.128 Sum_probs=102.9
Q ss_pred CCCCcEEEcccCCCcccCc-hhhcCCCcceEEEecCcccCC---CCcccccccCCcEEEcCCcCCCCc---ccccCcCCc
Q 048755 329 CPQLKYFHIRNDPSLRISD-NIFTGMTELRVLDFTEMHLLA---LPSSLGLLQNLQTLSLDFCILGDI---AIIGDLKKL 401 (674)
Q Consensus 329 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~---lp~~~~~l~~L~~L~l~~~~~~~~---~~~~~l~~L 401 (674)
+.+|+...+.++....++. +....|++++.|||+.|-+.. +..-...|++|+.|+++.|++..+ ..-..+++|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 3445555554444333332 233557777777777776553 223345677788888887766553 223357788
Q ss_pred cEEecCCCCch--hchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhh
Q 048755 402 EILTLRGSDME--KLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDEL 479 (674)
Q Consensus 402 ~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 479 (674)
+.|.+++|++. .+......+|+|..|++..|......... ...+..|++|++++|++.... .....
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~-----------~~~~~ 267 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFD-----------QGYKV 267 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccccc-----------ccccc
Confidence 88888888766 45555667888888888877422221111 234566778888887763222 22445
Q ss_pred cCCCCccEEEeeeccCCCC--Ccc-----cccccCccEEEEEEc
Q 048755 480 NNLSKLTSLEILIQDEKTL--PRD-----LSFFKMLQRYRISIG 516 (674)
Q Consensus 480 ~~l~~L~~L~l~~~~~~~~--~~~-----l~~~~~L~~L~l~~~ 516 (674)
+.++.|+.|+++.+++.++ |+. ...+++|+.|.+..+
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC
Confidence 6677777777777665443 222 234555666655444
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=1e-09 Score=102.09 Aligned_cols=129 Identities=21% Similarity=0.255 Sum_probs=104.3
Q ss_pred ccccccceeEeeccccccCCCCCc-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEE
Q 048755 304 KDTLKVCTAISLFNTNISELPQGF-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTL 382 (674)
Q Consensus 304 ~~~~~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L 382 (674)
...++.++.+++++|.+..+.+.+ -.|++|.|+++.|.+..+.. +..+++|+.|||++|.+.++-..-.++-+.++|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 345677888899999888887777 66889999999988877655 577889999999998888776655678888899
Q ss_pred EcCCcCCCCcccccCcCCccEEecCCCCchhch--HhhcCCCCCcEEeCCCCCC
Q 048755 383 SLDFCILGDIAIIGDLKKLEILTLRGSDMEKLV--EEMGELTQLRLLDLSYCFN 434 (674)
Q Consensus 383 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~ 434 (674)
.+..|.++.+++++++.+|..||+++|+|+.+- .++++++.|.++.+.+|+.
T Consensus 358 ~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 358 KLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 999988888888888999999999998888664 4678888888888877743
No 35
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.73 E-value=1.1e-07 Score=111.65 Aligned_cols=216 Identities=13% Similarity=0.113 Sum_probs=129.4
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEec-CCcCHHHHHHHHHHHhCCCCcc--------------cchHHHHHHHH
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVS-QTPQIKEIQREIAEKLGLKIDE--------------ESETVRAWRLL 65 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~--------------~~~~~~~~~~~ 65 (674)
.+|.||||++..++.+ ++.++|+++. ...++..+...++..++..... .........+.
T Consensus 40 paG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (903)
T PRK04841 40 PAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLF 113 (903)
T ss_pred CCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHH
Confidence 4799999999998853 2368999996 4446677777777777421111 01112233344
Q ss_pred HHHHc-CCcEEEEEeCCCCccc--hh-hccCCcCCCCCCeEEEEEeCChhhhh--ccCCCcceEecC----CCCHHHHHH
Q 048755 66 EQLKK-ETKILIILDDIWGSLD--LE-AIGIPVADDNGGCKVLLTARSQDVLS--CKMDCQQNFVVD----VLNEKEAWS 135 (674)
Q Consensus 66 ~~l~~-~kr~LlVlDdv~~~~~--~~-~l~~~~~~~~~gs~ilvTtr~~~~~~--~~~~~~~~~~l~----~L~~~~~~~ 135 (674)
..+.. +.+++|||||+....+ .. .+..-+.....+-+++||||...-.. .........+++ +|+.+|+.+
T Consensus 114 ~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ 193 (903)
T PRK04841 114 IELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQ 193 (903)
T ss_pred HHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHH
Confidence 44443 6799999999976521 12 22211222345678889999843221 000122345566 899999999
Q ss_pred HHHHHhCCCCCCCchhHHHHHHHHHhCCchhhHHHHHHHHhcCChHHHHHHHHHhccccccCCCcccccceeeeee-ecc
Q 048755 136 LFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLKRPFLRSFSGTQAVAAYSTIE-LSY 214 (674)
Q Consensus 136 lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~-~s~ 214 (674)
+|....+.. -..+...++.+.++|.|+++..++..+...... .......+.. .....+...+. --+
T Consensus 194 ll~~~~~~~----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~l~~~v~ 260 (903)
T PRK04841 194 FFDQRLSSP----IEAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAG--------INASHLSDYLVEEVL 260 (903)
T ss_pred HHHhccCCC----CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcC--------CCchhHHHHHHHHHH
Confidence 998776632 234567899999999999999998777644210 0111111100 00011222221 136
Q ss_pred cCCChHHHHHHHHHhccccccc
Q 048755 215 YQLEGEELRRTFLLIGYAFISC 236 (674)
Q Consensus 215 ~~L~~~~l~~~f~~~a~fp~~~ 236 (674)
+.||.+ .++.+...|+++.++
T Consensus 261 ~~l~~~-~~~~l~~~a~~~~~~ 281 (903)
T PRK04841 261 DNVDLE-TRHFLLRCSVLRSMN 281 (903)
T ss_pred hcCCHH-HHHHHHHhcccccCC
Confidence 788988 799999999987444
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.70 E-value=1.5e-08 Score=106.57 Aligned_cols=173 Identities=26% Similarity=0.379 Sum_probs=122.7
Q ss_pred CCCCCcEEEcccCCCcccCchhhcCCC-cceEEEecCcccCCCCcccccccCCcEEEcCCcCCCCc-ccccCcCCccEEe
Q 048755 328 ECPQLKYFHIRNDPSLRISDNIFTGMT-ELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDI-AIIGDLKKLEILT 405 (674)
Q Consensus 328 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~ 405 (674)
..+.+..|.+.++.+.++++.. ..+. +|+.|+++++.+..+|..+..+++|+.|+++.|.+... ...+.+.+|+.|+
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 4466777777777777777653 4443 78888888888888877777888888888888877774 3444778888888
Q ss_pred cCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCc
Q 048755 406 LRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKL 485 (674)
Q Consensus 406 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 485 (674)
++++++..+|..+..+..|.+|.++++.... .+.. +.++.++..+.+..+.+ ...+..++.++++
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~-~~~~~~l~~l~l~~n~~-------------~~~~~~~~~l~~l 257 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIE-LLSS-LSNLKNLSGLELSNNKL-------------EDLPESIGNLSNL 257 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCccee-cchh-hhhcccccccccCCcee-------------eeccchhcccccc
Confidence 8888888888766666678888887774322 2222 56677777776655543 1124566677788
Q ss_pred cEEEeeeccCCCCCcccccccCccEEEEEEcc
Q 048755 486 TSLEILIQDEKTLPRDLSFFKMLQRYRISIGY 517 (674)
Q Consensus 486 ~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~ 517 (674)
+.|+++++.+..++. +....+++.|+++...
T Consensus 258 ~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 258 ETLDLSNNQISSISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred ceecccccccccccc-ccccCccCEEeccCcc
Confidence 888888888777766 7777888888886544
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.66 E-value=4e-10 Score=109.73 Aligned_cols=116 Identities=16% Similarity=0.191 Sum_probs=48.4
Q ss_pred hccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccC--
Q 048755 552 LKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCG-- 629 (674)
Q Consensus 552 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~-- 629 (674)
.++|+.|.+.+|...++........+.+.|+.+.+.+|..+.+- .... .....|.|+.|.++.|...+.-...
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~---tL~s--ls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG---TLAS--LSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh---hHhh--hccCCchhccCChhhhhhhhhhhhhhh
Confidence 45555555555554444443333344555555555555333221 0000 2233455555555555433322100
Q ss_pred CCCccccCCccEEEEecCCCccccCCchhh-hhcccceeccccc
Q 048755 630 PLTAESFSKLKTIRVEGCDKLKNVFPLVIE-LTQLRTLELKNVF 672 (674)
Q Consensus 630 ~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~-l~~L~~L~l~~c~ 672 (674)
.....++..|..+++.+||.+.+-...... .++||.+++-+|.
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 111123444555555555544333222222 4555555554443
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.65 E-value=4.9e-09 Score=97.64 Aligned_cols=124 Identities=25% Similarity=0.291 Sum_probs=54.9
Q ss_pred ccCCcEEEcCCcCCCCc-ccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEe
Q 048755 376 LQNLQTLSLDFCILGDI-AIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYI 454 (674)
Q Consensus 376 l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 454 (674)
.+.|..+|+++|.++.+ .++.-++.++.|++++|.+..+.. +..+.+|++|++++| .++++.. .-.++.++++|.+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~G-wh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVG-WHLKLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhh-hHhhhcCEeeeeh
Confidence 34444555555444442 334444455555555554444333 444455555555544 2222211 0123444445555
Q ss_pred ccCCCccccccccCCcccccchhhhcCCCCccEEEeeeccCCCCC--cccccccCccEEEEEEc
Q 048755 455 GQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLP--RDLSFFKMLQRYRISIG 516 (674)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~ 516 (674)
.+|.+ ..+..++++-+|..|++.+|.+..+. ..++++|.|+.+.+.++
T Consensus 360 a~N~i--------------E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 360 AQNKI--------------ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhhhH--------------hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 44433 12344444445555555555443332 24455555555555433
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.2e-08 Score=100.22 Aligned_cols=201 Identities=22% Similarity=0.206 Sum_probs=100.9
Q ss_pred ccceeEeeccccccCCCC--Cc-CCCCCcEEEcccCCCccc--CchhhcCCCcceEEEecCcccCCCCcc--cccccCCc
Q 048755 308 KVCTAISLFNTNISELPQ--GF-ECPQLKYFHIRNDPSLRI--SDNIFTGMTELRVLDFTEMHLLALPSS--LGLLQNLQ 380 (674)
Q Consensus 308 ~~~~~l~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~lp~~--~~~l~~L~ 380 (674)
+.++.+++.++.....+. .. .|++++.|+++.|-+... .-.+..++++|+.|+++.|.+...-++ -..+.+|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 445555555554443332 12 566677777766544332 223345567777777776665532111 12456677
Q ss_pred EEEcCCcCCCC--c-ccccCcCCccEEecCCCC-chhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEecc
Q 048755 381 TLSLDFCILGD--I-AIIGDLKKLEILTLRGSD-MEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQ 456 (674)
Q Consensus 381 ~L~l~~~~~~~--~-~~~~~l~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 456 (674)
.|.++.|+++. + .....+++|+.|++.+|. +..--.....++.|+.|+|++|..+..-....++.++.|.-|+++.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence 77777776653 1 233456667777776663 2211112234556666777666444432122256666666666666
Q ss_pred CCCccccccccCCcccccchhhhcCCCCccEEEeeeccCCCCC--cccccccCccEEEEE
Q 048755 457 SPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLP--RDLSFFKMLQRYRIS 514 (674)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~ 514 (674)
|.+..... ............++|+.|++..|.+..++ ..+..+++|+.|.+.
T Consensus 281 tgi~si~~------~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 281 TGIASIAE------PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred cCcchhcC------CCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 65421111 01112223344566777777666653332 233444455555443
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.48 E-value=1.2e-07 Score=99.56 Aligned_cols=177 Identities=27% Similarity=0.340 Sum_probs=144.4
Q ss_pred ccceeEeeccccccCCCCCcCCC--CCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcC
Q 048755 308 KVCTAISLFNTNISELPQGFECP--QLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLD 385 (674)
Q Consensus 308 ~~~~~l~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 385 (674)
..++.+.+.++.+..++...... +|+.|++++|.+..++.. +..+++|+.|++++|.+..+|...+.+..|+.|+++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 56888999999999999888664 899999999999888633 578999999999999999999888899999999999
Q ss_pred CcCCCCc-ccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccc
Q 048755 386 FCILGDI-AIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKV 464 (674)
Q Consensus 386 ~~~~~~~-~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 464 (674)
++.+..+ ..+.....|++|.+.+|.+...+..+..+.++..+.+.++. +...+.. ++.++++++|++..|.+.
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i~---- 268 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQIS---- 268 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceecccccccc----
Confidence 9999884 44467778999999999777778788899999999877763 3333333 788999999999988762
Q ss_pred cccCCcccccchhhhcCCCCccEEEeeeccCCCCCcc
Q 048755 465 GGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD 501 (674)
Q Consensus 465 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 501 (674)
....++.+.+|+.|+++++.....+..
T Consensus 269 ----------~i~~~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 269 ----------SISSLGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ----------ccccccccCccCEEeccCccccccchh
Confidence 222377889999999998876555443
No 41
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.46 E-value=5.9e-06 Score=86.80 Aligned_cols=189 Identities=17% Similarity=0.071 Sum_probs=111.4
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCC-Cc--ccchHHHHHHHHHHHH-cCCcEEE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLK-ID--EESETVRAWRLLEQLK-KETKILI 76 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~--~~~~~~~~~~~~~~l~-~~kr~Ll 76 (674)
.+|+|||+++++++++.......-.+++|++....+...++..|++++... .. ..........+.+.+. .+++.+|
T Consensus 63 ~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi 142 (394)
T PRK00411 63 PPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIV 142 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 379999999999999887653234577788877778889999999998652 11 1222333444555554 3466899
Q ss_pred EEeCCCCcc------chhhccCCcCCCCCCe--EEEEEeCChhhhhcc------CCCcceEecCCCCHHHHHHHHHHHhC
Q 048755 77 ILDDIWGSL------DLEAIGIPVADDNGGC--KVLLTARSQDVLSCK------MDCQQNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 77 VlDdv~~~~------~~~~l~~~~~~~~~gs--~ilvTtr~~~~~~~~------~~~~~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
|||+++... .+..+...+ ....++ .+|.++......... .-....+.+++++.++..+++..++.
T Consensus 143 viDE~d~l~~~~~~~~l~~l~~~~-~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 143 ALDDINYLFEKEGNDVLYSLLRAH-EEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred EECCHhHhhccCCchHHHHHHHhh-hccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 999998642 233332221 112232 355565544322100 01124678999999999999998773
Q ss_pred CC-CCCCchhHHHHHHHHHh----CCchhhHHHHHHHHh-----cC---ChHHHHHHHHHh
Q 048755 143 DC-IENGELKSVATEVVKEC----AGLPIAIVPVAKALK-----NK---SLYEWRNALRQL 190 (674)
Q Consensus 143 ~~-~~~~~~~~~~~~i~~~c----~g~Plal~~~~~~l~-----~~---~~~~w~~~l~~l 190 (674)
.. ....-..++.+.+++.+ |..+.|+..+-.... +. +.+..+.+++..
T Consensus 222 ~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 222 EGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred hhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 11 11112233444444444 556677766544321 11 566666666654
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.5e-09 Score=98.59 Aligned_cols=85 Identities=22% Similarity=0.138 Sum_probs=49.5
Q ss_pred CCccEEecCCCCch--hchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccch
Q 048755 399 KKLEILTLRGSDME--KLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASL 476 (674)
Q Consensus 399 ~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 476 (674)
..||+||++...++ .+.-.+..+.+|+.|.+.+......+... +.+-.+|+.|+++.|... .....-
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~----------t~n~~~ 253 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGF----------TENALQ 253 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeecccccccc----------chhHHH
Confidence 35788888877666 44455667777777777776443333333 555666777777666431 111222
Q ss_pred hhhcCCCCccEEEeeecc
Q 048755 477 DELNNLSKLTSLEILIQD 494 (674)
Q Consensus 477 ~~l~~l~~L~~L~l~~~~ 494 (674)
.-+.+++.|..|+++++.
T Consensus 254 ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCF 271 (419)
T ss_pred HHHHhhhhHhhcCchHhh
Confidence 334455666666666654
No 43
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.35 E-value=4.7e-06 Score=89.49 Aligned_cols=251 Identities=19% Similarity=0.156 Sum_probs=147.4
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecC-CcCHHHHHHHHHHHhCCCCcccchH--------------HHHHHHH
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKIDEESET--------------VRAWRLL 65 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~--------------~~~~~~~ 65 (674)
.+|.||||++.+.+...... ..|.|.+... .-++..+.+.++..++.......+. .....+.
T Consensus 45 PAGfGKttl~aq~~~~~~~~---~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~ 121 (894)
T COG2909 45 PAGFGKTTLLAQWRELAADG---AAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLL 121 (894)
T ss_pred CCCCcHHHHHHHHHHhcCcc---cceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHH
Confidence 37999999999998844333 4699999875 4578888888888886332221111 1223333
Q ss_pred HHHHc-CCcEEEEEeCCCCccc--h-hhccCCcCCCCCCeEEEEEeCChhhhhc-cCC-CcceEecC----CCCHHHHHH
Q 048755 66 EQLKK-ETKILIILDDIWGSLD--L-EAIGIPVADDNGGCKVLLTARSQDVLSC-KMD-CQQNFVVD----VLNEKEAWS 135 (674)
Q Consensus 66 ~~l~~-~kr~LlVlDdv~~~~~--~-~~l~~~~~~~~~gs~ilvTtr~~~~~~~-~~~-~~~~~~l~----~L~~~~~~~ 135 (674)
..+.. .++..+||||..-..+ . +.+..-+.....+-.++||||++..... .+. .....+++ .++.+|+..
T Consensus 122 ~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~ 201 (894)
T COG2909 122 NELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAA 201 (894)
T ss_pred HHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHH
Confidence 33322 3689999999753321 1 1222222344558889999998865421 011 12344444 488999999
Q ss_pred HHHHHhCCCCCCCchhHHHHHHHHHhCCchhhHHHHHHHHhcC-ChHHHHHHHHHhccccccCCCcccccceeeeeeecc
Q 048755 136 LFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKALKNK-SLYEWRNALRQLKRPFLRSFSGTQAVAAYSTIELSY 214 (674)
Q Consensus 136 lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~s~ 214 (674)
+|....+. +....-.+.+.+..+|-+-|+..++=.+++. +.+.--..+....+...+. ...--+
T Consensus 202 fl~~~~~l----~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dY-----------L~eeVl 266 (894)
T COG2909 202 FLNDRGSL----PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDY-----------LVEEVL 266 (894)
T ss_pred HHHHcCCC----CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHH-----------HHHHHH
Confidence 99887652 2223558899999999999999998888833 3333222222110100000 001125
Q ss_pred cCCChHHHHHHHHHhccccccc------------hhhhhhhhccccccc-ccccHHHHHHHHHHHHHHHH
Q 048755 215 YQLEGEELRRTFLLIGYAFISC------------VKDVICYGMGLGLFQ-NINTLEEARDRAHTLVDKLK 271 (674)
Q Consensus 215 ~~L~~~~l~~~f~~~a~fp~~~------------~~~li~~w~~~g~~~-~~~~~~~~~~~~~~l~~~l~ 271 (674)
+.||++ ++..++-+|+++.++ -..++...-..|++- +..+ +.--..+|.+|.++.
T Consensus 267 d~Lp~~-l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd-~~~WfryH~LFaeFL 334 (894)
T COG2909 267 DRLPPE-LRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQRLDD-EGQWFRYHHLFAEFL 334 (894)
T ss_pred hcCCHH-HHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeeecC-CCceeehhHHHHHHH
Confidence 678887 799999999987332 123444445555442 2221 122235677777753
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=4.9e-07 Score=66.24 Aligned_cols=59 Identities=25% Similarity=0.453 Sum_probs=38.5
Q ss_pred CCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEEcCCcC
Q 048755 330 PQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDFCI 388 (674)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~ 388 (674)
++|+.|++++|.+..+++..|.++++|++|++++|.+..++ ..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35666666666666666666667777777777777666653 455666666666666654
No 45
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.35 E-value=5.9e-06 Score=81.28 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=87.2
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.+|+||||||+.++...... |.. ++-..+-.+-+++|++. ..+....|++.+|++|.
T Consensus 56 PPG~GKTTlA~liA~~~~~~--f~~-----~sAv~~gvkdlr~i~e~----------------a~~~~~~gr~tiLflDE 112 (436)
T COG2256 56 PPGTGKTTLARLIAGTTNAA--FEA-----LSAVTSGVKDLREIIEE----------------ARKNRLLGRRTILFLDE 112 (436)
T ss_pred CCCCCHHHHHHHHHHhhCCc--eEE-----eccccccHHHHHHHHHH----------------HHHHHhcCCceEEEEeh
Confidence 37999999999999977755 422 22211112222222222 22233347899999999
Q ss_pred CCCc--cchhhccCCcCCCCCCeEEEE--EeCChhhh--hccCCCcceEecCCCCHHHHHHHHHHHhC------CCCCCC
Q 048755 81 IWGS--LDLEAIGIPVADDNGGCKVLL--TARSQDVL--SCKMDCQQNFVVDVLNEKEAWSLFKKMTG------DCIENG 148 (674)
Q Consensus 81 v~~~--~~~~~l~~~~~~~~~gs~ilv--Ttr~~~~~--~~~~~~~~~~~l~~L~~~~~~~lf~~~~~------~~~~~~ 148 (674)
|..- .|-+.+ +|.-..|..|+| ||.|+.-. .......+++.+++|+.++..+++.+.+- +.....
T Consensus 113 IHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~ 189 (436)
T COG2256 113 IHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIV 189 (436)
T ss_pred hhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCccccc
Confidence 9743 344433 344566888887 55554332 12235568999999999999999998442 111122
Q ss_pred chhHHHHHHHHHhCCchhh
Q 048755 149 ELKSVATEVVKECAGLPIA 167 (674)
Q Consensus 149 ~~~~~~~~i~~~c~g~Pla 167 (674)
..+++.+-++..++|--.+
T Consensus 190 i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 190 LDEEALDYLVRLSNGDARR 208 (436)
T ss_pred CCHHHHHHHHHhcCchHHH
Confidence 2345777888888887544
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.32 E-value=4.3e-08 Score=93.72 Aligned_cols=84 Identities=20% Similarity=0.275 Sum_probs=38.7
Q ss_pred CCCCCcEEEcccCCCcc----cCchhhcCCCcceEEEecCccc----CCCCcc-------cccccCCcEEEcCCcCCCC-
Q 048755 328 ECPQLKYFHIRNDPSLR----ISDNIFTGMTELRVLDFTEMHL----LALPSS-------LGLLQNLQTLSLDFCILGD- 391 (674)
Q Consensus 328 ~~~~L~~L~l~~~~~~~----~~~~~~~~~~~Lr~L~l~~~~~----~~lp~~-------~~~l~~L~~L~l~~~~~~~- 391 (674)
....++.+++++|.+.. .....+...+.|+..++++-.. .++|+. +-.+++|++|+||.|-+..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 44556666666665432 1222344455666666654321 133332 2233456666666554322
Q ss_pred -cc----cccCcCCccEEecCCCCc
Q 048755 392 -IA----IIGDLKKLEILTLRGSDM 411 (674)
Q Consensus 392 -~~----~~~~l~~L~~L~l~~~~~ 411 (674)
++ -+.++..|++|.+.+|.+
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCC
Confidence 21 123345555555555544
No 47
>PRK06893 DNA replication initiation factor; Validated
Probab=98.30 E-value=3.2e-06 Score=80.82 Aligned_cols=143 Identities=18% Similarity=0.156 Sum_probs=86.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||+||+++++....+ ...+.++++... ..... .+.+.+. +.-+||+||+
T Consensus 48 ~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~---~~~~~--------------------~~~~~~~--~~dlLilDDi 100 (229)
T PRK06893 48 KSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKS---QYFSP--------------------AVLENLE--QQDLVCLDDL 100 (229)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHh---hhhhH--------------------HHHhhcc--cCCEEEEeCh
Confidence 6999999999999997755 335667766421 00001 1122222 2458999999
Q ss_pred CCc---cchhh-ccCCcCCC-CCCeEEEEEeCCh----------hhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCC
Q 048755 82 WGS---LDLEA-IGIPVADD-NGGCKVLLTARSQ----------DVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIE 146 (674)
Q Consensus 82 ~~~---~~~~~-l~~~~~~~-~~gs~ilvTtr~~----------~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 146 (674)
+.. .+|+. +...+... ..|..++|+|.+. ++.. .......+++++++.++.++++.+.+....
T Consensus 101 ~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd~e~~~~iL~~~a~~~~- 178 (229)
T PRK06893 101 QAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLTDEQKIIVLQRNAYQRG- 178 (229)
T ss_pred hhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCCHHHHHHHHHHHHHHcC-
Confidence 863 34543 22212111 2355555544432 2222 234456889999999999999998885221
Q ss_pred CCchhHHHHHHHHHhCCchhhHHHHHH
Q 048755 147 NGELKSVATEVVKECAGLPIAIVPVAK 173 (674)
Q Consensus 147 ~~~~~~~~~~i~~~c~g~Plal~~~~~ 173 (674)
-.-.+++..-|++.+.|...++..+-.
T Consensus 179 l~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 179 IELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 233457788889999888766555443
No 48
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=2e-06 Score=94.83 Aligned_cols=102 Identities=22% Similarity=0.346 Sum_probs=70.0
Q ss_pred ceEEEecCcccC-CCCcccccccCCcEEEcCCcCCCC--cccccCcCCccEEecCCCCch-hchHhhcCCCCCcEEeCCC
Q 048755 356 LRVLDFTEMHLL-ALPSSLGLLQNLQTLSLDFCILGD--IAIIGDLKKLEILTLRGSDME-KLVEEMGELTQLRLLDLSY 431 (674)
Q Consensus 356 Lr~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~ 431 (674)
++.|+|+++.+. .+|..++.+++|++|++++|.+.. |..++.+++|+.|++++|++. .+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 667777777776 567777777777777777777654 456777777777777777776 6677777777777777777
Q ss_pred CCCCCCCChhhhhC-CCCCCeEEeccCC
Q 048755 432 CFNLQVIPPNVISS-LSRLEELYIGQSP 458 (674)
Q Consensus 432 ~~~~~~~~~~~l~~-l~~L~~L~l~~~~ 458 (674)
|.....+|.. ++. ..++..+++.+|.
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCCc
Confidence 7666666655 333 3345556665554
No 49
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.28 E-value=3.9e-05 Score=79.70 Aligned_cols=169 Identities=15% Similarity=0.181 Sum_probs=99.5
Q ss_pred CCCCcHHHHHHHHHHhhhhc-ccC---ceEEEEEecCCcCHHHHHHHHHHHhC---CCCc--ccchHHHHHHHHHHHH-c
Q 048755 1 MGGIGKTTLVKEVGRQAKEN-NLF---EKVISSRVSQTPQIKEIQREIAEKLG---LKID--EESETVRAWRLLEQLK-K 70 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~-~~F---~~~~wv~~~~~~~~~~~~~~i~~~l~---~~~~--~~~~~~~~~~~~~~l~-~ 70 (674)
.+|+|||+++++++++.... ... -.++|+++....+...++..|++++. .... ..........+.+.+. .
T Consensus 48 ~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 127 (365)
T TIGR02928 48 KTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNER 127 (365)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 37999999999999976532 111 24778888877788899999999983 3221 1122333444555554 3
Q ss_pred CCcEEEEEeCCCCcc-c----hhhccCCc-CCCC--CCeEEEEEeCChhhhh----cc-CC-CcceEecCCCCHHHHHHH
Q 048755 71 ETKILIILDDIWGSL-D----LEAIGIPV-ADDN--GGCKVLLTARSQDVLS----CK-MD-CQQNFVVDVLNEKEAWSL 136 (674)
Q Consensus 71 ~kr~LlVlDdv~~~~-~----~~~l~~~~-~~~~--~gs~ilvTtr~~~~~~----~~-~~-~~~~~~l~~L~~~~~~~l 136 (674)
+++++||||+++... . ...+.... .... ..-.+|.+|....... .. .+ ....+.+++++.++..++
T Consensus 128 ~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~i 207 (365)
T TIGR02928 128 GDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDI 207 (365)
T ss_pred CCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHH
Confidence 568999999998661 1 22222110 1111 2334455554332210 00 01 124688999999999999
Q ss_pred HHHHhC-C---CCCCCchhHHHHHHHHHhCCchhhHH
Q 048755 137 FKKMTG-D---CIENGELKSVATEVVKECAGLPIAIV 169 (674)
Q Consensus 137 f~~~~~-~---~~~~~~~~~~~~~i~~~c~g~Plal~ 169 (674)
+..++. . ..-.++..+++.+++....|.|..+.
T Consensus 208 l~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al 244 (365)
T TIGR02928 208 LENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAI 244 (365)
T ss_pred HHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHH
Confidence 998773 1 11122333455566777778885443
No 50
>PF13173 AAA_14: AAA domain
Probab=98.23 E-value=3.5e-06 Score=72.52 Aligned_cols=112 Identities=23% Similarity=0.209 Sum_probs=73.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+||||++++++.+.. ....++++++.+.........+ ....+.+. ...++.+++||+|
T Consensus 11 R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~-~~~~~~~i~iDEi 70 (128)
T PF13173_consen 11 RGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLEL-IKPGKKYIFIDEI 70 (128)
T ss_pred CCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHh-hccCCcEEEEehh
Confidence 58999999999998877 2345778887654331111000 11222222 2236788999999
Q ss_pred CCccchhhccCCcCCCCCCeEEEEEeCChhhhh-----ccCCCcceEecCCCCHHHH
Q 048755 82 WGSLDLEAIGIPVADDNGGCKVLLTARSQDVLS-----CKMDCQQNFVVDVLNEKEA 133 (674)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~-----~~~~~~~~~~l~~L~~~~~ 133 (674)
....+|......+.....+.+|++|+.+..... ...+....++|.||+-.|.
T Consensus 71 q~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 71 QYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 998888876666655556789999999776652 1223445788999988763
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=3.5e-08 Score=92.03 Aligned_cols=131 Identities=23% Similarity=0.294 Sum_probs=86.4
Q ss_pred cCCcEEEcCCcCCCC--c-ccccCcCCccEEecCCCCch-hchHhhcCCCCCcEEeCCCCCCCCCCChh-hhhCCCCCCe
Q 048755 377 QNLQTLSLDFCILGD--I-AIIGDLKKLEILTLRGSDME-KLVEEMGELTQLRLLDLSYCFNLQVIPPN-VISSLSRLEE 451 (674)
Q Consensus 377 ~~L~~L~l~~~~~~~--~-~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~ 451 (674)
..|+++||++..++. . .-+..+++|+.|.+.|..+. .+-..+..-.+|+.|+++.|.-+++.... .+.+++.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 369999999987765 2 34567899999999998877 55566778889999999999877765543 3688999999
Q ss_pred EEeccCCCccccccccCCcccccchhhhcCCCCccEEEeeeccCC----CCCcccccccCccEEEEEEcc
Q 048755 452 LYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEK----TLPRDLSFFKMLQRYRISIGY 517 (674)
Q Consensus 452 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----~~~~~l~~~~~L~~L~l~~~~ 517 (674)
|++++|...... .......++ ++|..|+++|+.-. .+..-...+++|..|++++|.
T Consensus 265 LNlsWc~l~~~~--------Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 265 LNLSWCFLFTEK--------VTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred cCchHhhccchh--------hhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 999998762111 111122222 46777888776411 111111445555555555443
No 52
>PLN03150 hypothetical protein; Provisional
Probab=98.20 E-value=3.2e-06 Score=93.18 Aligned_cols=106 Identities=18% Similarity=0.315 Sum_probs=90.0
Q ss_pred CCcEEEcccCCCcccCchhhcCCCcceEEEecCcccC-CCCcccccccCCcEEEcCCcCCCC--cccccCcCCccEEecC
Q 048755 331 QLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLL-ALPSSLGLLQNLQTLSLDFCILGD--IAIIGDLKKLEILTLR 407 (674)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~ 407 (674)
.++.|++++|......+..+..+++|+.|+|++|.+. .+|..++.+++|++|++++|.+.. |..++.+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3678899988887666667899999999999999998 789899999999999999998875 6789999999999999
Q ss_pred CCCch-hchHhhcCC-CCCcEEeCCCCCCCC
Q 048755 408 GSDME-KLVEEMGEL-TQLRLLDLSYCFNLQ 436 (674)
Q Consensus 408 ~~~~~-~lp~~~~~l-~~L~~L~l~~~~~~~ 436 (674)
+|++. .+|..++.+ .++..+++.+|..+.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 99988 888877664 467788888775443
No 53
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.17 E-value=1.9e-06 Score=85.26 Aligned_cols=222 Identities=21% Similarity=0.238 Sum_probs=148.3
Q ss_pred CCCCcHHHHHHHHHHhhhhcccC-ceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEe
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLF-EKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILD 79 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 79 (674)
.|||||||++-++.. .... | +++..++...-.+...+.-.+...++........ ....+..++. ++|.++|+|
T Consensus 22 ~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~--~~~~~~~~~~-~rr~llvld 95 (414)
T COG3903 22 AGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDS--AVDTLVRRIG-DRRALLVLD 95 (414)
T ss_pred cCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccccchH--HHHHHHHHHh-hhhHHHHhc
Confidence 389999999999999 5544 7 5577778877777777777777777776543211 1223344444 489999999
Q ss_pred CCCCcc-chhhccCCcCCCCCCeEEEEEeCChhhhhccCCCcceEecCCCCHH-HHHHHHHHHhC----CCCCCCchhHH
Q 048755 80 DIWGSL-DLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVDVLNEK-EAWSLFKKMTG----DCIENGELKSV 153 (674)
Q Consensus 80 dv~~~~-~~~~l~~~~~~~~~gs~ilvTtr~~~~~~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~----~~~~~~~~~~~ 153 (674)
|..+.. +.......+...+..-.|+.|+|..-. ......+.+.+|+.- ++..+|...+. ...-.......
T Consensus 96 ncehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~ 171 (414)
T COG3903 96 NCEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAA 171 (414)
T ss_pred CcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhccceeecCCchHH
Confidence 987653 233333344445556678888886643 355667788887755 78888876663 22223445678
Q ss_pred HHHHHHHhCCchhhHHHHHHHHhcCChHHHHHHHHHhccccc--cCCCcccccceeeeeeecccCCChHHHHHHHHHhcc
Q 048755 154 ATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLKRPFL--RSFSGTQAVAAYSTIELSYYQLEGEELRRTFLLIGY 231 (674)
Q Consensus 154 ~~~i~~~c~g~Plal~~~~~~l~~~~~~~w~~~l~~l~~~~~--~~~~~~~~~~~~~~l~~s~~~L~~~~l~~~f~~~a~ 231 (674)
..+|..+.+|.|++|...+...+.......-..++.=.+... .........+..+.+.+||.-|+..+ +..|.-++.
T Consensus 172 v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe-~~~~~rLa~ 250 (414)
T COG3903 172 VAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE-RALFGRLAV 250 (414)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH-HHHhcchhh
Confidence 899999999999999999999998755444332222111111 11111123677899999999999985 888888888
Q ss_pred cc
Q 048755 232 AF 233 (674)
Q Consensus 232 fp 233 (674)
|.
T Consensus 251 ~~ 252 (414)
T COG3903 251 FV 252 (414)
T ss_pred hh
Confidence 86
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.17 E-value=2.5e-07 Score=88.62 Aligned_cols=40 Identities=28% Similarity=0.344 Sum_probs=20.6
Q ss_pred cCCCcceEEEecCcccC-CCC----cccccccCCcEEEcCCcCCC
Q 048755 351 TGMTELRVLDFTEMHLL-ALP----SSLGLLQNLQTLSLDFCILG 390 (674)
Q Consensus 351 ~~~~~Lr~L~l~~~~~~-~lp----~~~~~l~~L~~L~l~~~~~~ 390 (674)
-++++|++|+||+|-+. +-+ .-++.+..|+.|.+.+|.+.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 34556666666666543 111 22344556666666666543
No 55
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.16 E-value=4.1e-06 Score=80.16 Aligned_cols=83 Identities=17% Similarity=0.230 Sum_probs=56.9
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCC--cCHHHHHHHH-----HHHhCCCCccc-chHHHHHHHHHH-HHcC
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT--PQIKEIQREI-----AEKLGLKIDEE-SETVRAWRLLEQ-LKKE 71 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i-----~~~l~~~~~~~-~~~~~~~~~~~~-l~~~ 71 (674)
.+|+|||||+++++++...+ +|+.++|+.++.. +++.+++++| +..++.+.... .-........++ ...|
T Consensus 24 ~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~G 102 (249)
T cd01128 24 PPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHG 102 (249)
T ss_pred CCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 37999999999999998876 8999999998776 7999999999 33333211110 001111222222 2357
Q ss_pred CcEEEEEeCCCCc
Q 048755 72 TKILIILDDIWGS 84 (674)
Q Consensus 72 kr~LlVlDdv~~~ 84 (674)
+++++++|++...
T Consensus 103 ~~vll~iDei~r~ 115 (249)
T cd01128 103 KDVVILLDSITRL 115 (249)
T ss_pred CCEEEEEECHHHh
Confidence 9999999999643
No 56
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.15 E-value=7e-06 Score=71.21 Aligned_cols=106 Identities=25% Similarity=0.350 Sum_probs=75.9
Q ss_pred CCCcHHHHHHHHHHhhhhcc---cCceEEEEEecCCcCHHHHHHHHHHHhCCCCcc-cchHHHHHHHHHHHHcCCcEEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENN---LFEKVISSRVSQTPQIKEIQREIAEKLGLKIDE-ESETVRAWRLLEQLKKETKILII 77 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~---~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~l~~~kr~LlV 77 (674)
+|+|||++++++++...... .-..++|+++....+...+.++|+++++..... .........+.+.+.+.+..+||
T Consensus 13 ~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~lv 92 (131)
T PF13401_consen 13 PGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRRRVVLLV 92 (131)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHCTEEEEE
T ss_pred CCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcCCeEEE
Confidence 69999999999999876421 123578999988889999999999999887666 44555566777777776667999
Q ss_pred EeCCCCc-c--chhhccCCcCCCCCCeEEEEEeCC
Q 048755 78 LDDIWGS-L--DLEAIGIPVADDNGGCKVLLTARS 109 (674)
Q Consensus 78 lDdv~~~-~--~~~~l~~~~~~~~~gs~ilvTtr~ 109 (674)
+||++.. . .++.+.. +.+ ..+.++++..+.
T Consensus 93 iDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 93 IDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp EETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred EeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 9999765 2 2333322 222 566777777665
No 57
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.13 E-value=9.5e-06 Score=78.46 Aligned_cols=167 Identities=20% Similarity=0.237 Sum_probs=82.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHH---------HH----HHHHhCCCC-------cccchHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQ---------RE----IAEKLGLKI-------DEESETVRA 61 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~---------~~----i~~~l~~~~-------~~~~~~~~~ 61 (674)
.|+|||+|++++.+.....+ + .++|+...+......+. +. +...+.... .........
T Consensus 29 rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (234)
T PF01637_consen 29 RGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSAL 106 (234)
T ss_dssp TTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--H
T ss_pred CcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHH
Confidence 69999999999999885431 1 34444443333221111 11 222211110 112223344
Q ss_pred HHHHHHHHc-CCcEEEEEeCCCCcc-ch---hh----ccCCcCC--CCCCeEEEEEeCChhhhhc-------cCCCcceE
Q 048755 62 WRLLEQLKK-ETKILIILDDIWGSL-DL---EA----IGIPVAD--DNGGCKVLLTARSQDVLSC-------KMDCQQNF 123 (674)
Q Consensus 62 ~~~~~~l~~-~kr~LlVlDdv~~~~-~~---~~----l~~~~~~--~~~gs~ilvTtr~~~~~~~-------~~~~~~~~ 123 (674)
..+.+.+.. +++++||+||++... .. .. +...+.. ....-.+++++........ ..+....+
T Consensus 107 ~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~ 186 (234)
T PF01637_consen 107 ERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHI 186 (234)
T ss_dssp HHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EE
T ss_pred HHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccceE
Confidence 555566543 356999999997654 11 11 1111111 2233445555554433321 12334569
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHhCCchhhHHH
Q 048755 124 VVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAIVP 170 (674)
Q Consensus 124 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~ 170 (674)
.+++|+.+++++++...+.....-+...+..++|...+||+|..|..
T Consensus 187 ~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 187 ELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 99999999999999987643311122456679999999999987754
No 58
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.13 E-value=3.1e-06 Score=61.93 Aligned_cols=57 Identities=30% Similarity=0.415 Sum_probs=34.9
Q ss_pred CcceEEEecCcccCCCC-cccccccCCcEEEcCCcCCCC--cccccCcCCccEEecCCCC
Q 048755 354 TELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDFCILGD--IAIIGDLKKLEILTLRGSD 410 (674)
Q Consensus 354 ~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~ 410 (674)
++|++|++++|.+..+| ..+..+++|++|++++|.+.. +..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35677777777777665 345666666666666666555 2345556666666665554
No 59
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.07 E-value=0.0003 Score=71.52 Aligned_cols=161 Identities=13% Similarity=-0.010 Sum_probs=85.2
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCc-ccchHH----HHHHHHHHHHcCCcEE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKID-EESETV----RAWRLLEQLKKETKIL 75 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~----~~~~~~~~l~~~kr~L 75 (674)
.+|+|||++|+.+++..... + .+++... ......+..++..+....- -.++.+ ...+.......+.+..
T Consensus 59 ppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~ 132 (328)
T PRK00080 59 PPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLD 132 (328)
T ss_pred CCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhccee
Confidence 47999999999999987643 2 1222211 1111222333333322110 001100 1112222222334555
Q ss_pred EEEeCCCCccchhhccCCcCCCCCCeEEEEEeCChhhhhc-cCCCcceEecCCCCHHHHHHHHHHHhCCCCCCCchhHHH
Q 048755 76 IILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSC-KMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVA 154 (674)
Q Consensus 76 lVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~ 154 (674)
+|+|+..+...+.. .++ ..+-|..|++...+... ..+....+++++++.++..+++.+.+.... .....+.+
T Consensus 133 ~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~ 205 (328)
T PRK00080 133 IMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG-VEIDEEGA 205 (328)
T ss_pred eeeccCccccceee---cCC---CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CCcCHHHH
Confidence 66665544432221 111 13456666664433211 112345789999999999999998886321 22345678
Q ss_pred HHHHHHhCCchhhHHHHHHH
Q 048755 155 TEVVKECAGLPIAIVPVAKA 174 (674)
Q Consensus 155 ~~i~~~c~g~Plal~~~~~~ 174 (674)
..|++.|+|.|..+..+...
T Consensus 206 ~~ia~~~~G~pR~a~~~l~~ 225 (328)
T PRK00080 206 LEIARRSRGTPRIANRLLRR 225 (328)
T ss_pred HHHHHHcCCCchHHHHHHHH
Confidence 99999999999766555543
No 60
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.06 E-value=7.3e-07 Score=93.84 Aligned_cols=163 Identities=27% Similarity=0.285 Sum_probs=76.7
Q ss_pred cCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCCcccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCC
Q 048755 351 TGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLS 430 (674)
Q Consensus 351 ~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 430 (674)
..+.+|.+|++.++.+..+...+..+.+|++|++++|.++.+..+..+..|+.|++.+|.++.+.. +..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC-CccchhhhcccCC
Confidence 445555555555555554443344555555555555555555555555555555555555544432 3335555555555
Q ss_pred CCCCCCCCCh-hhhhCCCCCCeEEeccCCCcccccc--------ccCCcccccchhhhcCCCC--ccEEEeeeccCCCCC
Q 048755 431 YCFNLQVIPP-NVISSLSRLEELYIGQSPIMWGKVG--------GVDGERRNASLDELNNLSK--LTSLEILIQDEKTLP 499 (674)
Q Consensus 431 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~--------~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~ 499 (674)
+|.. ..+.. . +..+.+++.+.+.++.+...... .............+..+.. |+.+++.++.....+
T Consensus 171 ~n~i-~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~ 248 (414)
T KOG0531|consen 171 YNRI-VDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSP 248 (414)
T ss_pred cchh-hhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccccc
Confidence 5422 22221 1 23444555555544443211100 0000011111222222233 777788877776665
Q ss_pred cccccccCccEEEEEEc
Q 048755 500 RDLSFFKMLQRYRISIG 516 (674)
Q Consensus 500 ~~l~~~~~L~~L~l~~~ 516 (674)
..+..+..+..+++..+
T Consensus 249 ~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 249 EGLENLKNLPVLDLSSN 265 (414)
T ss_pred ccccccccccccchhhc
Confidence 55666666777766543
No 61
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.06 E-value=1e-05 Score=80.76 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=56.9
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc--CHHHHHHHHHHHhCCC-CcccchH-----HHHHHHHHHH-HcC
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP--QIKEIQREIAEKLGLK-IDEESET-----VRAWRLLEQL-KKE 71 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~-~~~~~~~-----~~~~~~~~~l-~~~ 71 (674)
.+|+||||||++||++...+ +|+.++||.+++.+ .+.+++++|...+-.. .++.... ..+....+++ ..|
T Consensus 177 ppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e~G 255 (416)
T PRK09376 177 PPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLVEHG 255 (416)
T ss_pred CCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 37999999999999999877 79999999999887 7888888886322111 1111111 1122223333 367
Q ss_pred CcEEEEEeCCCC
Q 048755 72 TKILIILDDIWG 83 (674)
Q Consensus 72 kr~LlVlDdv~~ 83 (674)
++++|++|++..
T Consensus 256 ~dVlL~iDsItR 267 (416)
T PRK09376 256 KDVVILLDSITR 267 (416)
T ss_pred CCEEEEEEChHH
Confidence 999999999954
No 62
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.99 E-value=8.1e-05 Score=78.10 Aligned_cols=148 Identities=17% Similarity=0.189 Sum_probs=85.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+||||+|+.+++..... | +.++.+.. .. +-.+++++.. ......+++.+|++|++
T Consensus 45 pGtGKTtLA~~ia~~~~~~--~---~~l~a~~~-~~-~~ir~ii~~~----------------~~~~~~g~~~vL~IDEi 101 (413)
T PRK13342 45 PGTGKTTLARIIAGATDAP--F---EALSAVTS-GV-KDLREVIEEA----------------RQRRSAGRRTILFIDEI 101 (413)
T ss_pred CCCCHHHHHHHHHHHhCCC--E---EEEecccc-cH-HHHHHHHHHH----------------HHhhhcCCceEEEEech
Confidence 7999999999999876533 3 22222211 11 1122222221 11122457899999999
Q ss_pred CCc--cchhhccCCcCCCCCCeEEEE--EeCChhhh--hccCCCcceEecCCCCHHHHHHHHHHHhCCC-CCC-CchhHH
Q 048755 82 WGS--LDLEAIGIPVADDNGGCKVLL--TARSQDVL--SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDC-IEN-GELKSV 153 (674)
Q Consensus 82 ~~~--~~~~~l~~~~~~~~~gs~ilv--Ttr~~~~~--~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~-~~~~~~ 153 (674)
+.. .+.+.+...+. .|..+++ ||.+.... .........+.+.+++.++...++.+.+... ... ....+.
T Consensus 102 ~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~a 178 (413)
T PRK13342 102 HRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEA 178 (413)
T ss_pred hhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHH
Confidence 865 34444433322 2455555 34443211 1112334688999999999999998866421 111 334567
Q ss_pred HHHHHHHhCCchhhHHHHHHHH
Q 048755 154 ATEVVKECAGLPIAIVPVAKAL 175 (674)
Q Consensus 154 ~~~i~~~c~g~Plal~~~~~~l 175 (674)
.+.+++.++|.+..+..+....
T Consensus 179 l~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 179 LDALARLANGDARRALNLLELA 200 (413)
T ss_pred HHHHHHhCCCCHHHHHHHHHHH
Confidence 8889999999997765554443
No 63
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00018 Score=74.09 Aligned_cols=101 Identities=8% Similarity=0.087 Sum_probs=65.7
Q ss_pred CCcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+|+++... .++.+...+.......++|++|.+.... ....+....+++.+++.++..+.+.+.+.... .
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-~ 196 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES-I 196 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC-C
Confidence 356699999998764 4566655554445566677766554322 21223357899999999999998887664211 1
Q ss_pred CchhHHHHHHHHHhCCchhhHHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPVA 172 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~~ 172 (674)
.-..+.++.|++.++|.|..+....
T Consensus 197 ~i~~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 197 DTDEYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2234677889999999886544443
No 64
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00015 Score=73.08 Aligned_cols=146 Identities=16% Similarity=0.187 Sum_probs=92.6
Q ss_pred CCCcHHHHHHHHHHhhh----hcccCceEEEEEe-cCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEE
Q 048755 2 GGIGKTTLVKEVGRQAK----ENNLFEKVISSRV-SQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILI 76 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~----~~~~F~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~Ll 76 (674)
.|+||||+|+.++...- ...|+|...|... +....+++ .+++.+.+..... .+++=++
T Consensus 35 ~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~~~~~p~----------------~~~~kv~ 97 (313)
T PRK05564 35 DGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEEVNKKPY----------------EGDKKVI 97 (313)
T ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHHHhcCcc----------------cCCceEE
Confidence 69999999999998652 2345565555442 23334444 3344444332211 1345556
Q ss_pred EEeCCC--CccchhhccCCcCCCCCCeEEEEEeCChhhhh-ccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCCchhHH
Q 048755 77 ILDDIW--GSLDLEAIGIPVADDNGGCKVLLTARSQDVLS-CKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSV 153 (674)
Q Consensus 77 VlDdv~--~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~ 153 (674)
|+|+++ +...++++...+.....++.+|++|.+.+... ......+.+++.+++.++....+.+.... ...+.
T Consensus 98 iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~ 172 (313)
T PRK05564 98 IIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND-----IKEEE 172 (313)
T ss_pred EEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC-----CCHHH
Confidence 666664 44568888777776677888988887765442 11234578999999999998887765431 12345
Q ss_pred HHHHHHHhCCchhhHH
Q 048755 154 ATEVVKECAGLPIAIV 169 (674)
Q Consensus 154 ~~~i~~~c~g~Plal~ 169 (674)
++.++..++|.|..+.
T Consensus 173 ~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 173 KKSAIAFSDGIPGKVE 188 (313)
T ss_pred HHHHHHHcCCCHHHHH
Confidence 7788999999886543
No 65
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.92 E-value=0.00019 Score=72.48 Aligned_cols=161 Identities=14% Similarity=0.051 Sum_probs=88.0
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCc-ccchHH----HHHHHHHHHHcCCcEE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKID-EESETV----RAWRLLEQLKKETKIL 75 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~----~~~~~~~~l~~~kr~L 75 (674)
.+|+|||+||+.+++..... + ..++.+......++. ..+..++...- -.++.+ ........+..+.+..
T Consensus 38 p~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l~-~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~ 111 (305)
T TIGR00635 38 PPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDLA-AILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLD 111 (305)
T ss_pred CCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhHH-HHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhhee
Confidence 47999999999999987643 2 122222111222222 22333322110 001100 1112222223345566
Q ss_pred EEEeCCCCccchhhccCCcCCCCCCeEEEEEeCChhhhhc-cCCCcceEecCCCCHHHHHHHHHHHhCCCCCCCchhHHH
Q 048755 76 IILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSC-KMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVA 154 (674)
Q Consensus 76 lVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~ 154 (674)
+|+|+..+..++.. +++ +.+-|..||+...+... ..+....+++++++.++..+++.+.+.... ..-..+..
T Consensus 112 ~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~-~~~~~~al 184 (305)
T TIGR00635 112 IVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLN-VEIEPEAA 184 (305)
T ss_pred eeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhC-CCcCHHHH
Confidence 77777665544431 111 24556667776443221 112345789999999999999998885221 22335678
Q ss_pred HHHHHHhCCchhhHHHHHHH
Q 048755 155 TEVVKECAGLPIAIVPVAKA 174 (674)
Q Consensus 155 ~~i~~~c~g~Plal~~~~~~ 174 (674)
..|++.|+|.|..+..++..
T Consensus 185 ~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 185 LEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred HHHHHHhCCCcchHHHHHHH
Confidence 89999999999776655544
No 66
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.90 E-value=4.9e-05 Score=72.98 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=84.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||++|+++++..... ....++++++.-.+ .. ..+...+. +.-+||+||+
T Consensus 47 ~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~------~~-----------------~~~~~~~~--~~~lLvIDdi 99 (226)
T TIGR03420 47 SGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ------AD-----------------PEVLEGLE--QADLVCLDDV 99 (226)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH------hH-----------------HHHHhhcc--cCCEEEEeCh
Confidence 6999999999999987644 33466666643221 00 01111121 2348999999
Q ss_pred CCcc---chh-hccCCcCC-CCCCeEEEEEeCChhhh--------hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755 82 WGSL---DLE-AIGIPVAD-DNGGCKVLLTARSQDVL--------SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG 148 (674)
Q Consensus 82 ~~~~---~~~-~l~~~~~~-~~~gs~ilvTtr~~~~~--------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 148 (674)
+... .|. .+...+.. ...+.++|+||+..... .........+++++++.++...++...+... ...
T Consensus 100 ~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~-~~~ 178 (226)
T TIGR03420 100 EAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARR-GLQ 178 (226)
T ss_pred hhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHc-CCC
Confidence 7543 222 23222211 12234788888753311 1111224578999999999999887755311 112
Q ss_pred chhHHHHHHHHHhCCchhhHHHHHHH
Q 048755 149 ELKSVATEVVKECAGLPIAIVPVAKA 174 (674)
Q Consensus 149 ~~~~~~~~i~~~c~g~Plal~~~~~~ 174 (674)
-..+..+.+.+.+.|.|..+..+...
T Consensus 179 ~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 179 LPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 23466788888899998777665433
No 67
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.87 E-value=5.9e-06 Score=90.82 Aligned_cols=146 Identities=21% Similarity=0.228 Sum_probs=95.2
Q ss_pred ccceeEeeccccc--cCCCCC--cCCCCCcEEEcccCCCc-ccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEE
Q 048755 308 KVCTAISLFNTNI--SELPQG--FECPQLKYFHIRNDPSL-RISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTL 382 (674)
Q Consensus 308 ~~~~~l~l~~~~~--~~~~~~--~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L 382 (674)
.++++|++.|... ...|.. ..+|+|++|.+.+-... +-....+..+++|+.||+++++++.+ ..++.|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4556666655322 111111 16788999988873321 12234466789999999999999888 778899999999
Q ss_pred EcCCcCCCC---cccccCcCCccEEecCCCCchhch-------HhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeE
Q 048755 383 SLDFCILGD---IAIIGDLKKLEILTLRGSDMEKLV-------EEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEEL 452 (674)
Q Consensus 383 ~l~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~lp-------~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 452 (674)
.+++=.+.. +..+..|++|++||++......-+ +.-..+|+||.|+.+++.....+-...+..-++|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 888766554 467788999999999887433222 1223588999999887754444433434455556555
Q ss_pred Ee
Q 048755 453 YI 454 (674)
Q Consensus 453 ~l 454 (674)
.+
T Consensus 281 ~~ 282 (699)
T KOG3665|consen 281 AA 282 (699)
T ss_pred hh
Confidence 43
No 68
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00013 Score=80.57 Aligned_cols=153 Identities=14% Similarity=0.183 Sum_probs=91.8
Q ss_pred CCCcHHHHHHHHHHhhhhcc-------------------cCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENN-------------------LFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAW 62 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~-------------------~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 62 (674)
.|+||||+|+.+++...-.. .|..+++++.+....+++ .++|.+.+.
T Consensus 47 pGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDd-IReLie~v~------------- 112 (944)
T PRK14949 47 RGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDD-TRELLDNVQ------------- 112 (944)
T ss_pred CCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHH-HHHHHHHHH-------------
Confidence 69999999999998765321 122234443332222222 233333221
Q ss_pred HHHHHHHcCCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCC-hhhhhccCCCcceEecCCCCHHHHHHHHHH
Q 048755 63 RLLEQLKKETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARS-QDVLSCKMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 63 ~~~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~-~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
..-..+++-++|||+++.. ...+.++..+.......++|++|.+ ..+..........|++++++.++..+.+.+
T Consensus 113 ---~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~ 189 (944)
T PRK14949 113 ---YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNH 189 (944)
T ss_pred ---hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHH
Confidence 0112357789999999865 3456654444444445556655544 333322223457899999999999999888
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCchhhHHHHH
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLPIAIVPVA 172 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~ 172 (674)
.+... ......+..+.|++.++|.|..+..+.
T Consensus 190 il~~E-gI~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 190 ILTQE-QLPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred HHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 76421 122334678889999999987655554
No 69
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.6e-05 Score=53.17 Aligned_cols=37 Identities=35% Similarity=0.504 Sum_probs=22.5
Q ss_pred cceEEEecCcccCCCCcccccccCCcEEEcCCcCCCC
Q 048755 355 ELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGD 391 (674)
Q Consensus 355 ~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 391 (674)
+|++|++++|.++.+|+.++.|++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 5666666666666666656666666666666665554
No 70
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00035 Score=74.09 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=65.6
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEE-EeCChhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLL-TARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv-Ttr~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+|+++.. ..++.+...+......+++|+ ||+...+..........+++.+++.++..+.+.+.+.... .
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg-i 205 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN-L 205 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC-C
Confidence 46778999999875 457776655555455666555 4444444322233457899999999999999998875221 1
Q ss_pred CchhHHHHHHHHHhCCchhhHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVP 170 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~ 170 (674)
....+....|++.++|.+..+..
T Consensus 206 ~ie~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 206 KTDIEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHH
Confidence 22346678899999998755433
No 71
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00026 Score=76.68 Aligned_cols=147 Identities=12% Similarity=0.135 Sum_probs=90.9
Q ss_pred CCCcHHHHHHHHHHhhhhc-------------------ccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKEN-------------------NLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAW 62 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~-------------------~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 62 (674)
.|+||||+|+.+++...-+ +.|..+++++.+....++++ +++++.+...
T Consensus 47 pGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdI-ReLIe~a~~~----------- 114 (830)
T PRK07003 47 RGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEM-AALLERAVYA----------- 114 (830)
T ss_pred CCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHH-HHHHHHHHhc-----------
Confidence 5999999999998865421 12333555555443333322 2222221110
Q ss_pred HHHHHHHcCCcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHH
Q 048755 63 RLLEQLKKETKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 63 ~~~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
-..++.-++|||+++... .++.+...+.....+.++|++|++.... .........++++.++.++..+.+.+
T Consensus 115 -----P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~ 189 (830)
T PRK07003 115 -----PVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLER 189 (830)
T ss_pred -----cccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHH
Confidence 012345588999998764 3676655554555577777777765443 22234457899999999999999988
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCchh
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLPI 166 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~Pl 166 (674)
.+.... .....+..+.|++.++|...
T Consensus 190 Il~~Eg-I~id~eAL~lIA~~A~GsmR 215 (830)
T PRK07003 190 ILGEER-IAFEPQALRLLARAAQGSMR 215 (830)
T ss_pred HHHHcC-CCCCHHHHHHHHHHcCCCHH
Confidence 775221 12235678889999998764
No 72
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.77 E-value=0.00033 Score=64.98 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=61.0
Q ss_pred CCcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+.+-++|+||++... ..+.+...+......+.+|++|++.... .........+++.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g----- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G----- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C-----
Confidence 456789999997652 3555554554444566677777654322 212234568999999999999988776 2
Q ss_pred CchhHHHHHHHHHhCCchhh
Q 048755 148 GELKSVATEVVKECAGLPIA 167 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Pla 167 (674)
...+.+..+++.++|.|..
T Consensus 169 -i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 -ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred -CCHHHHHHHHHHcCCCccc
Confidence 1246788999999998853
No 73
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=1.4e-05 Score=75.13 Aligned_cols=189 Identities=19% Similarity=0.223 Sum_probs=103.8
Q ss_pred CcCCccEEecCCCCch---hchHhhcCCCCCcEEeCCCCCCCCCCChhhh-hCCCCCCeEEeccCCCccccccccCCccc
Q 048755 397 DLKKLEILTLRGSDME---KLVEEMGELTQLRLLDLSYCFNLQVIPPNVI-SSLSRLEELYIGQSPIMWGKVGGVDGERR 472 (674)
Q Consensus 397 ~l~~L~~L~l~~~~~~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 472 (674)
..+.++.+|+.+|.+. ++-..+.+|+.|+.|+++.|+....+.. + -.+.+|++|.+.+..+.|...
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~L~w~~~-------- 138 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTGLSWTQS-------- 138 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCCCChhhh--------
Confidence 3567777777777665 3445567888888888887743222111 1 234577777777766654332
Q ss_pred ccchhhhcCCCCccEEEeeeccCCCCC---cccc-cccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecchhH
Q 048755 473 NASLDELNNLSKLTSLEILIQDEKTLP---RDLS-FFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGH 548 (674)
Q Consensus 473 ~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 548 (674)
-..+..++.++.|.++.|....+- ..+. ..+.+.+++...|... .|. .....
T Consensus 139 ---~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~----~w~-----------------~~~~l 194 (418)
T KOG2982|consen 139 ---TSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ----LWL-----------------NKNKL 194 (418)
T ss_pred ---hhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHH----HHH-----------------HHHhH
Confidence 133445566666666654321110 0000 1122333333333211 010 11223
Q ss_pred HhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCccccccc
Q 048755 549 IMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEI 626 (674)
Q Consensus 549 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 626 (674)
...|||+..+.+..|+. ++....-....+|.+-.|.+... ++.+|..-. ....||.|..|.+.+.|-+..+
T Consensus 195 ~r~Fpnv~sv~v~e~Pl-K~~s~ek~se~~p~~~~LnL~~~-~idswasvD-----~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGPL-KTESSEKGSEPFPSLSCLNLGAN-NIDSWASVD-----ALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HhhcccchheeeecCcc-cchhhcccCCCCCcchhhhhccc-ccccHHHHH-----HHcCCchhheeeccCCcccccc
Confidence 45588999888888763 33333333456777777777544 555553221 4667899999988887766655
No 74
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.0016 Score=66.42 Aligned_cols=167 Identities=19% Similarity=0.253 Sum_probs=103.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCC-CCcccchHHHHHHHHHHHH-cCCcEEEEEe
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGL-KIDEESETVRAWRLLEQLK-KETKILIILD 79 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~l~-~~kr~LlVlD 79 (674)
.|+|||+.++.|+.+......=..++.|++-...++..++.+|+++++. +..+....+....+.+.+. .++.+++|||
T Consensus 51 ~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLD 130 (366)
T COG1474 51 TGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILD 130 (366)
T ss_pred CCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEc
Confidence 6999999999999998865222228999999999999999999999963 3334455555666666665 3689999999
Q ss_pred CCCCccc-----hhhccCCcCCCCCCeEEEE--EeCChhhh-------hccCCCcceEecCCCCHHHHHHHHHHHhC---
Q 048755 80 DIWGSLD-----LEAIGIPVADDNGGCKVLL--TARSQDVL-------SCKMDCQQNFVVDVLNEKEAWSLFKKMTG--- 142 (674)
Q Consensus 80 dv~~~~~-----~~~l~~~~~~~~~gs~ilv--Ttr~~~~~-------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~--- 142 (674)
+++.... +..+....... +++|++ .+-+-... ....+. ..+..++.+.+|..+++..++.
T Consensus 131 Eid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~ 207 (366)
T COG1474 131 EVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGF 207 (366)
T ss_pred chhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhc
Confidence 9975422 22232221122 343333 33322211 111222 3478999999999999998883
Q ss_pred -CCCCCCchhHHHHHHHHHhCC-chhhHHHH
Q 048755 143 -DCIENGELKSVATEVVKECAG-LPIAIVPV 171 (674)
Q Consensus 143 -~~~~~~~~~~~~~~i~~~c~g-~Plal~~~ 171 (674)
+..-.+..-+.+..++..-+| .-.|+..+
T Consensus 208 ~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 208 SAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred cCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 222233344444455555554 33444433
No 75
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=1.3e-05 Score=88.14 Aligned_cols=103 Identities=22% Similarity=0.305 Sum_probs=49.1
Q ss_pred CCCcEEEcccCCCc--ccCchhhcCCCcceEEEecCcccCC--CCcccccccCCcEEEcCCcCCCCcccccCcCCccEEe
Q 048755 330 PQLKYFHIRNDPSL--RISDNIFTGMTELRVLDFTEMHLLA--LPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILT 405 (674)
Q Consensus 330 ~~L~~L~l~~~~~~--~~~~~~~~~~~~Lr~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 405 (674)
.+|+.|+++|.... ..+......++.|+.|.+.+-.+.. ...-..++++|..||+++++++.+.++++|++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 45556666553221 1222223335566666655544321 1111224555555566655555555555555555555
Q ss_pred cCCCCchhch--HhhcCCCCCcEEeCCCC
Q 048755 406 LRGSDMEKLV--EEMGELTQLRLLDLSYC 432 (674)
Q Consensus 406 l~~~~~~~lp--~~~~~l~~L~~L~l~~~ 432 (674)
+++=.++.-. ..+.+|++|++||+|..
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 5544444222 23445555555555543
No 76
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.75 E-value=9.9e-05 Score=74.31 Aligned_cols=82 Identities=17% Similarity=0.245 Sum_probs=56.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC--cCHHHHHHHHHHHhCCCCcccchH------HHHHHHHHHH-HcCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT--PQIKEIQREIAEKLGLKIDEESET------VRAWRLLEQL-KKET 72 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~~~~~l-~~~k 72 (674)
+|+|||||++.+++....+ +|+..+||.+.+. .++.+++++|...+-...-+.+.. ..+.+..+++ ..|+
T Consensus 177 ~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~Gk 255 (415)
T TIGR00767 177 PKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKK 255 (415)
T ss_pred CCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCC
Confidence 6999999999999998766 7999999999866 799999999954432211111111 1112222222 4689
Q ss_pred cEEEEEeCCCCc
Q 048755 73 KILIILDDIWGS 84 (674)
Q Consensus 73 r~LlVlDdv~~~ 84 (674)
+++|++|++..-
T Consensus 256 dVVLlIDEitR~ 267 (415)
T TIGR00767 256 DVVILLDSITRL 267 (415)
T ss_pred CeEEEEEChhHH
Confidence 999999999643
No 77
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00056 Score=72.87 Aligned_cols=99 Identities=12% Similarity=0.073 Sum_probs=64.9
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCCh-hhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQ-DVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+|+++.. ..++.+...+........+|++|... .+..........+++.+++.++..+.+.+.+.... .
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~eg-i 193 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEG-R 193 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcC-C
Confidence 45678999999865 34666655554444555555555443 33222223457899999999999999988774211 1
Q ss_pred CchhHHHHHHHHHhCCchhhHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVP 170 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~ 170 (674)
....+....|++.++|.+..+..
T Consensus 194 ~i~~~Al~~ia~~s~GdlR~aln 216 (504)
T PRK14963 194 EAEPEALQLVARLADGAMRDAES 216 (504)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHH
Confidence 12346788999999999865543
No 78
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00034 Score=74.73 Aligned_cols=102 Identities=9% Similarity=0.065 Sum_probs=66.1
Q ss_pred cCCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeC-ChhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCC
Q 048755 70 KETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTAR-SQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIE 146 (674)
Q Consensus 70 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr-~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 146 (674)
.++.-++|+|+++.. ..++.+...+.....+.++|++|. ...+..........++++.++.++..+.+.+.+....
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg- 200 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG- 200 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC-
Confidence 356679999999866 346666555544444555555444 4444322233457899999999999998887764211
Q ss_pred CCchhHHHHHHHHHhCCchhhHHHHH
Q 048755 147 NGELKSVATEVVKECAGLPIAIVPVA 172 (674)
Q Consensus 147 ~~~~~~~~~~i~~~c~g~Plal~~~~ 172 (674)
.....+..+.|++.++|.|.....+.
T Consensus 201 i~~d~eAL~~IA~~A~Gs~RdALsLL 226 (700)
T PRK12323 201 IAHEVNALRLLAQAAQGSMRDALSLT 226 (700)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11224567889999999997655443
No 79
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.71 E-value=6e-05 Score=76.28 Aligned_cols=39 Identities=13% Similarity=0.254 Sum_probs=18.8
Q ss_pred ccccEEEecCCCCccccccCCCCCCccccceeeeccccCceee
Q 048755 553 KGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRL 595 (674)
Q Consensus 553 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 595 (674)
++|+.|.+.+|..++.++... .++|+.|.+.+|..++.+
T Consensus 72 ~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 72 NELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred CCCcEEEccCCCCcccCCchh----hhhhhheEccCccccccc
Confidence 345555555555544433211 235555555555444433
No 80
>PRK08727 hypothetical protein; Validated
Probab=97.70 E-value=0.00024 Score=68.17 Aligned_cols=139 Identities=14% Similarity=0.104 Sum_probs=83.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||.||+++++....+ ...+.++++.+ ....+. ...+.+. +.-+||+||+
T Consensus 50 ~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~~-----------------~~~~~l~--~~dlLiIDDi 102 (233)
T PRK08727 50 AGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRLR-----------------DALEALE--GRSLVALDGL 102 (233)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhHH-----------------HHHHHHh--cCCEEEEeCc
Confidence 6999999999999987655 23566665422 111111 1222332 3469999999
Q ss_pred CCcc---chhhccCCcCC--CCCCeEEEEEeCChhhh--------hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755 82 WGSL---DLEAIGIPVAD--DNGGCKVLLTARSQDVL--------SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG 148 (674)
Q Consensus 82 ~~~~---~~~~l~~~~~~--~~~gs~ilvTtr~~~~~--------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 148 (674)
.... .|......+.+ ...|..+|+|++...-. .........+++++++.++..+++.+++... .-.
T Consensus 103 ~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~-~l~ 181 (233)
T PRK08727 103 ESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR-GLA 181 (233)
T ss_pred ccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc-CCC
Confidence 7442 23322111211 12355689998853221 1122235688999999999999999877421 123
Q ss_pred chhHHHHHHHHHhCCchhhH
Q 048755 149 ELKSVATEVVKECAGLPIAI 168 (674)
Q Consensus 149 ~~~~~~~~i~~~c~g~Plal 168 (674)
-..+...-|++.+.|-...+
T Consensus 182 l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 182 LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred CCHHHHHHHHHhCCCCHHHH
Confidence 33567788888888766554
No 81
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.69 E-value=7e-07 Score=93.36 Aligned_cols=105 Identities=26% Similarity=0.353 Sum_probs=47.3
Q ss_pred CCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCCcccccC-cCCccEEecCCCCchhchHhhcCCCCCcEEeCCC
Q 048755 353 MTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGD-LKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSY 431 (674)
Q Consensus 353 ~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~ 431 (674)
++.|+.|+|++|++.+.. .+..|.+|++||++.|.+...+.++. =..|+.|++++|.++++- ++.++++|+.|++++
T Consensus 186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGLDLSY 263 (1096)
T ss_pred HHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hHHhhhhhhccchhH
Confidence 445555555555555443 44455555555555554444222221 012555555555554442 344555555555555
Q ss_pred CCCCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 432 CFNLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 432 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
|-....-.-..+..|..|+.|++.+|++
T Consensus 264 Nll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 264 NLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 4221111111134444555555555554
No 82
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.00048 Score=73.83 Aligned_cols=152 Identities=12% Similarity=0.159 Sum_probs=90.1
Q ss_pred CCCcHHHHHHHHHHhhhhc-------------------ccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKEN-------------------NLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAW 62 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~-------------------~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 62 (674)
.|+||||+|+.+++...-. ..|..++.++.+....++++ +++++.+..
T Consensus 46 pGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddI-Reli~~~~y------------ 112 (702)
T PRK14960 46 RGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDT-RELLDNVPY------------ 112 (702)
T ss_pred CCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHH-HHHHHHHhh------------
Confidence 5999999999998875421 12223444444433333222 223322211
Q ss_pred HHHHHHHcCCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHH
Q 048755 63 RLLEQLKKETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 63 ~~~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
.-..+++-++|+|+|+.. ...+.+...+.....+.++|++|.+..-. .........+++++++.++..+.+.+
T Consensus 113 ----~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~ 188 (702)
T PRK14960 113 ----APTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGA 188 (702)
T ss_pred ----hhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHH
Confidence 001245678999999865 34555544444444556677766653322 11224457899999999999998887
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCchhhHHHH
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLPIAIVPV 171 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~ 171 (674)
.+.... .....+....|++.++|.+..+..+
T Consensus 189 Il~kEg-I~id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 189 ILEKEQ-IAADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred HHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 764211 1233467788999999987655443
No 83
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.0008 Score=71.86 Aligned_cols=148 Identities=12% Similarity=0.132 Sum_probs=86.7
Q ss_pred CCCcHHHHHHHHHHhhhhc-------------------ccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKEN-------------------NLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAW 62 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~-------------------~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 62 (674)
.|+||||+|+.+++...-. ..|..+++++......++++ ++|++.+.
T Consensus 47 ~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~i-r~ii~~~~------------- 112 (546)
T PRK14957 47 RGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEET-KEILDNIQ------------- 112 (546)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHH-HHHHHHHH-------------
Confidence 6999999999999865321 12334555544333333322 22222211
Q ss_pred HHHHHHHcCCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCC-hhhhhccCCCcceEecCCCCHHHHHHHHHH
Q 048755 63 RLLEQLKKETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARS-QDVLSCKMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 63 ~~~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~-~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
..-..+++-++|+|+++.. ...+.+...+.......++|.+|.+ +.+..........+++++++.++..+.+.+
T Consensus 113 ---~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~ 189 (546)
T PRK14957 113 ---YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKI 189 (546)
T ss_pred ---hhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHH
Confidence 1112346779999999865 3455665555444445555544443 333322234457899999999999888877
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCchhh
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLPIA 167 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~Pla 167 (674)
.+.... .....+....|++.++|.+.-
T Consensus 190 il~~eg-i~~e~~Al~~Ia~~s~GdlR~ 216 (546)
T PRK14957 190 ILAKEN-INSDEQSLEYIAYHAKGSLRD 216 (546)
T ss_pred HHHHcC-CCCCHHHHHHHHHHcCCCHHH
Confidence 653211 122345678899999997653
No 84
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.64 E-value=0.00012 Score=74.11 Aligned_cols=142 Identities=16% Similarity=0.105 Sum_probs=70.6
Q ss_pred hhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecchhHHhhhcccc
Q 048755 477 DELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIE 556 (674)
Q Consensus 477 ~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~ 556 (674)
..+..+.+++.|+++++...++|. -..+|++|.+..|.....+|... +.++..|.+.++.... ..+++|+
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~------sLP~sLe 115 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEIS------GLPESVR 115 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccc------ccccccc
Confidence 344455667777777666666662 23457777776666554444311 1234444444332111 1235566
Q ss_pred EEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCcccc
Q 048755 557 DLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESF 636 (674)
Q Consensus 557 ~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l 636 (674)
.|.+.+ .....+... .++|+.|.+.++....... . ...-.++|+.|.+.+|..+. + |..+.
T Consensus 116 ~L~L~~-n~~~~L~~L-----PssLk~L~I~~~n~~~~~~-----l--p~~LPsSLk~L~Is~c~~i~-L---P~~LP-- 176 (426)
T PRK15386 116 SLEIKG-SATDSIKNV-----PNGLTSLSINSYNPENQAR-----I--DNLISPSLKTLSLTGCSNII-L---PEKLP-- 176 (426)
T ss_pred eEEeCC-CCCcccccC-----cchHhheeccccccccccc-----c--ccccCCcccEEEecCCCccc-C---ccccc--
Confidence 666643 222222211 1467777765432111100 0 11122578888888887553 3 22222
Q ss_pred CCccEEEEecC
Q 048755 637 SKLKTIRVEGC 647 (674)
Q Consensus 637 ~~L~~L~i~~C 647 (674)
++|+.|++..+
T Consensus 177 ~SLk~L~ls~n 187 (426)
T PRK15386 177 ESLQSITLHIE 187 (426)
T ss_pred ccCcEEEeccc
Confidence 68888888764
No 85
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.00042 Score=75.22 Aligned_cols=102 Identities=9% Similarity=0.066 Sum_probs=65.5
Q ss_pred cCCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCC-hhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCC
Q 048755 70 KETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARS-QDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIE 146 (674)
Q Consensus 70 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~-~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 146 (674)
.+++-++|+|+++.. ...+.+...+.......++|.+|.+ ..+..........|++++++.++....+.+.+....
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~- 195 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ- 195 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC-
Confidence 356779999999865 3456554444444445555555554 333322223457899999999999999887663111
Q ss_pred CCchhHHHHHHHHHhCCchhhHHHHH
Q 048755 147 NGELKSVATEVVKECAGLPIAIVPVA 172 (674)
Q Consensus 147 ~~~~~~~~~~i~~~c~g~Plal~~~~ 172 (674)
.....+..+.|+..++|.+..+..+.
T Consensus 196 i~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 196 IPFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12234567889999999887555544
No 86
>PRK09087 hypothetical protein; Validated
Probab=97.61 E-value=0.00066 Score=64.52 Aligned_cols=112 Identities=13% Similarity=0.066 Sum_probs=68.7
Q ss_pred EEEEeCCCCcc----chhhccCCcCCCCCCeEEEEEeCChhhh--------hccCCCcceEecCCCCHHHHHHHHHHHhC
Q 048755 75 LIILDDIWGSL----DLEAIGIPVADDNGGCKVLLTARSQDVL--------SCKMDCQQNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 75 LlVlDdv~~~~----~~~~l~~~~~~~~~gs~ilvTtr~~~~~--------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
+|++||+.... .+-++...+ ...|..+|+|++...-. .........+++++++.++-..++.+.+.
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~--~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSV--RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHH--HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 78889996431 122221111 12366788888742211 22334557899999999999999998885
Q ss_pred CCCCCCchhHHHHHHHHHhCCchhhHHHHHHHHh------cC--ChHHHHHHHHH
Q 048755 143 DCIENGELKSVATEVVKECAGLPIAIVPVAKALK------NK--SLYEWRNALRQ 189 (674)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~------~~--~~~~w~~~l~~ 189 (674)
.. .-.-.+++..-|++.+.|...++..+-..|. ++ +....+++++.
T Consensus 168 ~~-~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~ 221 (226)
T PRK09087 168 DR-QLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNE 221 (226)
T ss_pred Hc-CCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 32 1233457888899999888777665444442 22 55555555544
No 87
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.60 E-value=0.00073 Score=69.37 Aligned_cols=167 Identities=13% Similarity=0.082 Sum_probs=86.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccC-ceEEEEEecCCcCH--HHHHH--HHHHHhCCC-CcccchHHHHHHHHHHHH-----c
Q 048755 2 GGIGKTTLVKEVGRQAKENNLF-EKVISSRVSQTPQI--KEIQR--EIAEKLGLK-IDEESETVRAWRLLEQLK-----K 70 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F-~~~~wv~~~~~~~~--~~~~~--~i~~~l~~~-~~~~~~~~~~~~~~~~l~-----~ 70 (674)
.|+||||+|+.+++...... + ...+.+++++..+. ..+.. .....++.. ............+.+... .
T Consensus 45 ~GtGKT~la~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (337)
T PRK12402 45 PGSGKTAAVRALARELYGDP-WENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLS 123 (337)
T ss_pred CCCCHHHHHHHHHHHhcCcc-cccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCC
Confidence 69999999999998776432 2 22455555432100 00000 000000000 000111122222322221 1
Q ss_pred CCcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+.+-+||+||++... ....+...+......+++|+|+...... .........+++.+++.++..+++.+.+.....
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~- 202 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV- 202 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 234589999997652 2333333332333456777777543322 111233467889999999999998887642111
Q ss_pred CchhHHHHHHHHHhCCchhhHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVP 170 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~ 170 (674)
.-..+..+.+++.++|.+..+..
T Consensus 203 ~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 203 DYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHH
Confidence 13356788899999887655443
No 88
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.59 E-value=0.00073 Score=71.24 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=97.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||.|++++++.......-..+++++ .+++...+...++... .....+.+... ..-+||+||+
T Consensus 150 ~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~~~~~~~~~~--~~dvLiIDDi 215 (450)
T PRK14087 150 SGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------KEIEQFKNEIC--QNDVLIIDDV 215 (450)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hHHHHHHHHhc--cCCEEEEecc
Confidence 59999999999999776432122344433 3567777776654311 12233333333 3458999999
Q ss_pred CCcc---ch-hhccCCcCC-CCCCeEEEEEeCChh-hh-------hccCCCcceEecCCCCHHHHHHHHHHHhCCC-CCC
Q 048755 82 WGSL---DL-EAIGIPVAD-DNGGCKVLLTARSQD-VL-------SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDC-IEN 147 (674)
Q Consensus 82 ~~~~---~~-~~l~~~~~~-~~~gs~ilvTtr~~~-~~-------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~ 147 (674)
.... .+ +.+..-+.. ...|..||+|+.... .. .......-.+.+++++.++...++.+++... ...
T Consensus 216 q~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~ 295 (450)
T PRK14087 216 QFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQ 295 (450)
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCC
Confidence 7542 22 222111111 123446788765432 11 1122334677899999999999999888521 111
Q ss_pred CchhHHHHHHHHHhCCchhhHHHHHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPVAKAL 175 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~~~~l 175 (674)
.-..++..-|++.++|.|..+..+...+
T Consensus 296 ~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 296 EVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred CCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 3446788999999999998887776555
No 89
>PRK05642 DNA replication initiation factor; Validated
Probab=97.56 E-value=0.0005 Score=65.94 Aligned_cols=144 Identities=15% Similarity=0.165 Sum_probs=84.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||.||+++++....+ -..++|++..+ +... ...+.+.+.. -=+||+||+
T Consensus 54 ~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~--~d~LiiDDi 106 (234)
T PRK05642 54 DGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-----------------GPELLDNLEQ--YELVCLDDL 106 (234)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-----------------hHHHHHhhhh--CCEEEEech
Confidence 6999999999999877644 23567766532 2211 0123333332 126889999
Q ss_pred CCc---cchhh-ccCCcCC-CCCCeEEEEEeCChhhh-h-------ccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755 82 WGS---LDLEA-IGIPVAD-DNGGCKVLLTARSQDVL-S-------CKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG 148 (674)
Q Consensus 82 ~~~---~~~~~-l~~~~~~-~~~gs~ilvTtr~~~~~-~-------~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 148 (674)
... .+|+. +...+.. ...|..+|+|++...-. . .+......+++++++.++-.+++..++... .-.
T Consensus 107 ~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~-~~~ 185 (234)
T PRK05642 107 DVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRR-GLH 185 (234)
T ss_pred hhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc-CCC
Confidence 633 34433 2222211 23466788888753322 1 111234678999999999999988665321 112
Q ss_pred chhHHHHHHHHHhCCchhhHHHHHH
Q 048755 149 ELKSVATEVVKECAGLPIAIVPVAK 173 (674)
Q Consensus 149 ~~~~~~~~i~~~c~g~Plal~~~~~ 173 (674)
-.+++..-+++.+.|...++..+-.
T Consensus 186 l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 186 LTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred CCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 2357778888888887665554433
No 90
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.52 E-value=2.4e-06 Score=89.46 Aligned_cols=125 Identities=19% Similarity=0.159 Sum_probs=97.3
Q ss_pred cccceeEeeccccccCCCCCc-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcc-cccccCCcEEEc
Q 048755 307 LKVCTAISLFNTNISELPQGF-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSS-LGLLQNLQTLSL 384 (674)
Q Consensus 307 ~~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-~~~l~~L~~L~l 384 (674)
+..+...+++.|.+..+.... -++.|+.|+++.|...+.. .+..+++|+.|||++|.+..+|.. ...+. |+.|.+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 344556666666665554444 5688999999999988776 478899999999999999888753 22344 999999
Q ss_pred CCcCCCCcccccCcCCccEEecCCCCchhch--HhhcCCCCCcEEeCCCCCC
Q 048755 385 DFCILGDIAIIGDLKKLEILTLRGSDMEKLV--EEMGELTQLRLLDLSYCFN 434 (674)
Q Consensus 385 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~ 434 (674)
++|.++.+.++.+|.+|+.||+++|-+...- .-++.+..|+.|++.+|+.
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 9999999999999999999999998665332 2367888999999999853
No 91
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.51 E-value=1.8e-05 Score=83.37 Aligned_cols=171 Identities=23% Similarity=0.339 Sum_probs=89.1
Q ss_pred ccccceeEeeccccccCCCC-CcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEc
Q 048755 306 TLKVCTAISLFNTNISELPQ-GFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSL 384 (674)
Q Consensus 306 ~~~~~~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l 384 (674)
....+..+++.++.+..+.. .-.+++|+.|++++|.+.++.+ +..+..|+.|++++|.+..+.. +..+.+|+.+++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l 169 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLKLLDL 169 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccC-CccchhhhcccC
Confidence 34556666666666666665 3356666666666666666554 3455556666666666655432 233666666666
Q ss_pred CCcCCCCccc--ccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCC--CCeEEeccCCCc
Q 048755 385 DFCILGDIAI--IGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSR--LEELYIGQSPIM 460 (674)
Q Consensus 385 ~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~ 460 (674)
++|.+..... ...+.+|+.+++.++.+..+.. +..+..+..+++..+. +..+.. +..+.. |+++++.++.+.
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~-~~~~~~l~~~~l~~n~-i~~~~~--l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNSIREIEG-LDLLKKLVLLSLLDNK-ISKLEG--LNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCchhcccc-hHHHHHHHHhhccccc-ceeccC--cccchhHHHHHHhcccCccc
Confidence 6666655444 4566666666666665543321 1222222222333331 111111 222222 566666666541
Q ss_pred cccccccCCcccccchhhhcCCCCccEEEeeeccCC
Q 048755 461 WGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEK 496 (674)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 496 (674)
.....+..+.++..|++..+...
T Consensus 246 -------------~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 246 -------------RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred -------------cccccccccccccccchhhcccc
Confidence 11144556667777777765543
No 92
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.51 E-value=0.00031 Score=66.45 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=89.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||.|.+++++.......=..+++++ .+++.+.+.+.+... ...++.+.+. .-=+|++||+
T Consensus 43 ~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~--------~~~~~~~~~~--~~DlL~iDDi 106 (219)
T PF00308_consen 43 SGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG--------EIEEFKDRLR--SADLLIIDDI 106 (219)
T ss_dssp TTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT--------SHHHHHHHHC--TSSEEEEETG
T ss_pred CCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc--------cchhhhhhhh--cCCEEEEecc
Confidence 59999999999999887642222355544 456666666665331 1233444444 3558999999
Q ss_pred CCcc---chhh-ccCCcCC-CCCCeEEEEEeCChhhh--------hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755 82 WGSL---DLEA-IGIPVAD-DNGGCKVLLTARSQDVL--------SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG 148 (674)
Q Consensus 82 ~~~~---~~~~-l~~~~~~-~~~gs~ilvTtr~~~~~--------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 148 (674)
+... .|.. +..-+.. ...|.+||+|++..... .........+++++.+.++..+++.+.+.... -.
T Consensus 107 ~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~-~~ 185 (219)
T PF00308_consen 107 QFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG-IE 185 (219)
T ss_dssp GGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT---
T ss_pred hhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC-CC
Confidence 7542 2322 1111111 13466899999654221 11223456899999999999999998885211 12
Q ss_pred chhHHHHHHHHHhCCchhhHHHHHHH
Q 048755 149 ELKSVATEVVKECAGLPIAIVPVAKA 174 (674)
Q Consensus 149 ~~~~~~~~i~~~c~g~Plal~~~~~~ 174 (674)
-.++++.-+++.+.+..-.+..+-..
T Consensus 186 l~~~v~~~l~~~~~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 186 LPEEVIEYLARRFRRDVRELEGALNR 211 (219)
T ss_dssp S-HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 34567777888887776655554433
No 93
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.51 E-value=0.0013 Score=71.97 Aligned_cols=139 Identities=19% Similarity=0.138 Sum_probs=82.1
Q ss_pred CCCCcHHHHHHHHHHhhhhc---ccCc--eEEEEEecCCcCHHHHHHHHHHHhCCCCcc--cchHHHHHHHHHHHHc--C
Q 048755 1 MGGIGKTTLVKEVGRQAKEN---NLFE--KVISSRVSQTPQIKEIQREIAEKLGLKIDE--ESETVRAWRLLEQLKK--E 71 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~---~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~--~ 71 (674)
.+|+|||+.++.|.++.... .... .+++|++..-.+...+++.|++++...... .........++..+.. +
T Consensus 789 ~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r 868 (1164)
T PTZ00112 789 MPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNR 868 (1164)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccc
Confidence 37999999999999876532 1222 377888877778899999999988433221 1222334445554422 2
Q ss_pred CcEEEEEeCCCCcc---c--hhhccCCcCCCCCCeEEEE--EeCChhh---h----hccCCCcceEecCCCCHHHHHHHH
Q 048755 72 TKILIILDDIWGSL---D--LEAIGIPVADDNGGCKVLL--TARSQDV---L----SCKMDCQQNFVVDVLNEKEAWSLF 137 (674)
Q Consensus 72 kr~LlVlDdv~~~~---~--~~~l~~~~~~~~~gs~ilv--Ttr~~~~---~----~~~~~~~~~~~l~~L~~~~~~~lf 137 (674)
...+||||+|+... + +..+... ....+++|++ +|...+. . ....+ ...+..++++.++..+++
T Consensus 869 ~v~IIILDEID~L~kK~QDVLYnLFR~--~~~s~SKLiLIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dIL 945 (1164)
T PTZ00112 869 NVSILIIDEIDYLITKTQKVLFTLFDW--PTKINSKLVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKII 945 (1164)
T ss_pred cceEEEeehHhhhCccHHHHHHHHHHH--hhccCCeEEEEEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHH
Confidence 34699999997542 1 2222211 1123444444 3322111 1 11111 123667999999999999
Q ss_pred HHHhC
Q 048755 138 KKMTG 142 (674)
Q Consensus 138 ~~~~~ 142 (674)
..++.
T Consensus 946 k~RAe 950 (1164)
T PTZ00112 946 KERLE 950 (1164)
T ss_pred HHHHH
Confidence 99885
No 94
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0013 Score=68.49 Aligned_cols=101 Identities=9% Similarity=0.014 Sum_probs=65.3
Q ss_pred cCCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCC-hhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCC
Q 048755 70 KETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARS-QDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIE 146 (674)
Q Consensus 70 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~-~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 146 (674)
.++.-++|+|+|+.. ..++++...+.........|.+|.+ ..+........+.|.+.+++.++..+.+.+.+....
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg- 197 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN- 197 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC-
Confidence 356679999999865 4577765555443345554444443 444322234457899999999999988887764211
Q ss_pred CCchhHHHHHHHHHhCCchhhHHHH
Q 048755 147 NGELKSVATEVVKECAGLPIAIVPV 171 (674)
Q Consensus 147 ~~~~~~~~~~i~~~c~g~Plal~~~ 171 (674)
..-..+....|++.++|.+..+..+
T Consensus 198 i~~e~eAL~~Ia~~S~Gd~RdAL~l 222 (484)
T PRK14956 198 VQYDQEGLFWIAKKGDGSVRDMLSF 222 (484)
T ss_pred CCCCHHHHHHHHHHcCChHHHHHHH
Confidence 1223567889999999998654443
No 95
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0013 Score=69.27 Aligned_cols=151 Identities=12% Similarity=0.094 Sum_probs=91.9
Q ss_pred CCCcHHHHHHHHHHhhhh-------------------cccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKE-------------------NNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAW 62 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~-------------------~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 62 (674)
.|+||||+|+.++....- ...+..++.++.+....+++ .++|.+......
T Consensus 44 ~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vdd-IR~Iie~~~~~P---------- 112 (491)
T PRK14964 44 SGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDD-IKVILENSCYLP---------- 112 (491)
T ss_pred CCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHH-HHHHHHHHHhcc----------
Confidence 699999999999874310 11233456666665555444 333433321110
Q ss_pred HHHHHHHcCCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCC-hhhhhccCCCcceEecCCCCHHHHHHHHHH
Q 048755 63 RLLEQLKKETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARS-QDVLSCKMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 63 ~~~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~-~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
..+++=++|+|+++.. +..+++...+......+++|++|.+ +.+..........+++.+++.++..+.+.+
T Consensus 113 ------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ 186 (491)
T PRK14964 113 ------ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVD 186 (491)
T ss_pred ------ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHH
Confidence 1235668999999765 3455555555444556666665544 333322234557899999999999999888
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCchhhHHH
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLPIAIVP 170 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~ 170 (674)
.+.... ..-..+....|++.++|.+..+..
T Consensus 187 ia~~Eg-i~i~~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 187 IAKKEN-IEHDEESLKLIAENSSGSMRNALF 216 (491)
T ss_pred HHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 775221 122346778899999998765443
No 96
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.50 E-value=0.00067 Score=65.12 Aligned_cols=144 Identities=13% Similarity=0.063 Sum_probs=84.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||+||+++++..... -..+.++++..... ....+.+.+. +--+|++||+
T Consensus 54 ~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~-----------------------~~~~~~~~~~--~~dlliiDdi 106 (235)
T PRK08084 54 EGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW-----------------------FVPEVLEGME--QLSLVCIDNI 106 (235)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh-----------------------hhHHHHHHhh--hCCEEEEeCh
Confidence 6999999999999987654 23466666642100 0011122221 1237999999
Q ss_pred CCc---cchhhcc-CCcCC-CCCC-eEEEEEeCChhhh--------hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 82 WGS---LDLEAIG-IPVAD-DNGG-CKVLLTARSQDVL--------SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 82 ~~~---~~~~~l~-~~~~~-~~~g-s~ilvTtr~~~~~--------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
... .+|+... ..+.. ...| .++|+||+..... ..+......++++++++++-.+++.+++... .-
T Consensus 107 ~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~-~~ 185 (235)
T PRK08084 107 ECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLR-GF 185 (235)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHc-CC
Confidence 753 3343321 11111 1123 3688888855322 1223445789999999999999988766421 12
Q ss_pred CchhHHHHHHHHHhCCchhhHHHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPVAK 173 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~~~ 173 (674)
.-.+++..-|++.+.|...++..+-.
T Consensus 186 ~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 186 ELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred CCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 33457788888888887665544433
No 97
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=6.2e-05 Score=70.88 Aligned_cols=178 Identities=17% Similarity=0.220 Sum_probs=90.2
Q ss_pred CCCCCcEEEcccCCCcccC--chhhcCCCcceEEEecCcccCCCCccc-ccccCCcEEEcCCcCCCC---cccccCcCCc
Q 048755 328 ECPQLKYFHIRNDPSLRIS--DNIFTGMTELRVLDFTEMHLLALPSSL-GLLQNLQTLSLDFCILGD---IAIIGDLKKL 401 (674)
Q Consensus 328 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~lp~~~-~~l~~L~~L~l~~~~~~~---~~~~~~l~~L 401 (674)
.+..++.+++.+|.+.+.. ..++.+++.|++|+++.|.+...-..+ -.+.+|++|-|.++.+.- -.....++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 5667777777777665533 344667788888888877655322222 356677777777775533 2445566677
Q ss_pred cEEecCCCCchhch---HhhcCC-CCCcEEeCCCCCCCCCCCh-hhhhCCCCCCeEEeccCCCccccccccCCcccccch
Q 048755 402 EILTLRGSDMEKLV---EEMGEL-TQLRLLDLSYCFNLQVIPP-NVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASL 476 (674)
Q Consensus 402 ~~L~l~~~~~~~lp---~~~~~l-~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 476 (674)
+.|+++.|++..+- ..+... +.+++|....|....-... .....++++..+.+..|++. ....-
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK-----------~~s~e 217 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLK-----------TESSE 217 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCccc-----------chhhc
Confidence 77777766444221 111111 1344444444421111000 11233556666666666552 12222
Q ss_pred hhhcCCCCccEEEeeeccCCCCC--cccccccCccEEEEEEc
Q 048755 477 DELNNLSKLTSLEILIQDEKTLP--RDLSFFKMLQRYRISIG 516 (674)
Q Consensus 477 ~~l~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~ 516 (674)
.....++.+..|++..+.+.++. +.+..+++|+.|.+...
T Consensus 218 k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSEN 259 (418)
T ss_pred ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCC
Confidence 23334444555555555443332 23455566666655433
No 98
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.0017 Score=68.66 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=87.1
Q ss_pred CCCcHHHHHHHHHHhhhhcc-------------------cCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENN-------------------LFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAW 62 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~-------------------~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 62 (674)
.|+||||+|+.+++...... .+..++.++.+....+.++ ++|.+.+...
T Consensus 45 pGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~i-R~i~~~~~~~----------- 112 (472)
T PRK14962 45 RGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEI-RKIRDAVGYR----------- 112 (472)
T ss_pred CCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHH-HHHHHHHhhC-----------
Confidence 69999999999988754321 1112344444333333322 2333222110
Q ss_pred HHHHHHHcCCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCC-hhhhhccCCCcceEecCCCCHHHHHHHHHH
Q 048755 63 RLLEQLKKETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARS-QDVLSCKMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 63 ~~~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~-~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
. ..+++-++|+|+++.. .+.+.+...+........+|++|.+ ..+..........+++.+++.++....+.+
T Consensus 113 ----p-~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~ 187 (472)
T PRK14962 113 ----P-MEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQE 187 (472)
T ss_pred ----h-hcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHH
Confidence 0 1245679999999754 3345554444443344555545544 223222234456899999999999998888
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCc-hhhHHHHHH
Q 048755 140 MTGDCIENGELKSVATEVVKECAGL-PIAIVPVAK 173 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~-Plal~~~~~ 173 (674)
.+.... ..-..++...|++.++|- +.++..+-.
T Consensus 188 i~~~eg-i~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 188 VAEAEG-IEIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred HHHHcC-CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 774211 122356778889888654 555555544
No 99
>PF14516 AAA_35: AAA-like domain
Probab=97.48 E-value=0.0037 Score=63.34 Aligned_cols=169 Identities=12% Similarity=0.170 Sum_probs=97.9
Q ss_pred CCcHHHHHHHHHHhhhhcccCceEEEEEecCC-----cCHHHHHHHHHH----HhCCCCc-------ccchHHHHHHHHH
Q 048755 3 GIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-----PQIKEIQREIAE----KLGLKID-------EESETVRAWRLLE 66 (674)
Q Consensus 3 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-----~~~~~~~~~i~~----~l~~~~~-------~~~~~~~~~~~~~ 66 (674)
..|||+|..++.++....+ + .++++++..- .+...+++.++. +++.... ............+
T Consensus 41 q~GKTSll~~l~~~l~~~~-~-~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~ 118 (331)
T PF14516_consen 41 QMGKTSLLLRLLERLQQQG-Y-RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFE 118 (331)
T ss_pred cCCHHHHHHHHHHHHHHCC-C-EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHH
Confidence 5899999999999888652 3 4668877642 246666655554 4444321 0111122223332
Q ss_pred -HHH--cCCcEEEEEeCCCCccc---h-hhc----cCCcC-----CCCCC-eEEEEEeCChhhh----hccCCCcceEec
Q 048755 67 -QLK--KETKILIILDDIWGSLD---L-EAI----GIPVA-----DDNGG-CKVLLTARSQDVL----SCKMDCQQNFVV 125 (674)
Q Consensus 67 -~l~--~~kr~LlVlDdv~~~~~---~-~~l----~~~~~-----~~~~g-s~ilvTtr~~~~~----~~~~~~~~~~~l 125 (674)
.+. .+++.+|++|+|+..-. + .++ +.... +.... +-|++.+...... .........+++
T Consensus 119 ~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L 198 (331)
T PF14516_consen 119 EYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIEL 198 (331)
T ss_pred HHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeC
Confidence 232 25899999999975421 1 111 11110 00111 1222222111111 111234468899
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHhCCchhhHHHHHHHHhcC
Q 048755 126 DVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKALKNK 178 (674)
Q Consensus 126 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~ 178 (674)
++++.+|+..|..++-.. ......++|....+|+|.-+..++..+.+.
T Consensus 199 ~~Ft~~ev~~L~~~~~~~-----~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 199 PDFTPEEVQELAQRYGLE-----FSQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred CCCCHHHHHHHHHhhhcc-----CCHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999999998876432 112338899999999999999999999764
No 100
>PLN03025 replication factor C subunit; Provisional
Probab=97.48 E-value=0.0011 Score=67.06 Aligned_cols=151 Identities=13% Similarity=0.083 Sum_probs=84.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCc-eEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFE-KVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.|+||||+|+.+++..... .|. .++-++.++..+.+. .+++++........ ...++.-++|+|+
T Consensus 43 ~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~~-vr~~i~~~~~~~~~-------------~~~~~~kviiiDE 107 (319)
T PLN03025 43 PGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGIDV-VRNKIKMFAQKKVT-------------LPPGRHKIVILDE 107 (319)
T ss_pred CCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHHH-HHHHHHHHHhcccc-------------CCCCCeEEEEEec
Confidence 6999999999999987533 132 233344444433332 22222221100000 0123567899999
Q ss_pred CCCcc--chhhccCCcCCCCCCeEEEEEeCChh-hhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHH
Q 048755 81 IWGSL--DLEAIGIPVADDNGGCKVLLTARSQD-VLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEV 157 (674)
Q Consensus 81 v~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~-~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i 157 (674)
++... ..+.+...+......+++++++.... +..........+++++++.++..+.+.+.+..... .-..+....+
T Consensus 108 ~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi-~i~~~~l~~i 186 (319)
T PLN03025 108 ADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKV-PYVPEGLEAI 186 (319)
T ss_pred hhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 98652 23333322323344566776665432 21111123467899999999999988887742111 1224678899
Q ss_pred HHHhCCchhhH
Q 048755 158 VKECAGLPIAI 168 (674)
Q Consensus 158 ~~~c~g~Plal 168 (674)
++.++|-...+
T Consensus 187 ~~~~~gDlR~a 197 (319)
T PLN03025 187 IFTADGDMRQA 197 (319)
T ss_pred HHHcCCCHHHH
Confidence 99999876443
No 101
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.48 E-value=0.00076 Score=65.53 Aligned_cols=143 Identities=19% Similarity=0.242 Sum_probs=87.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+||||||+-+++.-+... +.+|..|-...-..-.+.|+++- + ......++|.+|++|+|
T Consensus 171 pG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~a--------------q-~~~~l~krkTilFiDEi 231 (554)
T KOG2028|consen 171 PGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQA--------------Q-NEKSLTKRKTILFIDEI 231 (554)
T ss_pred CCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHH--------------H-HHHhhhcceeEEEeHHh
Confidence 79999999999999888664 45666654333233334444331 0 11223468999999999
Q ss_pred CC--ccchhhccCCcCCCCCCeEEEE--EeCChhhh--hccCCCcceEecCCCCHHHHHHHHHHHh---CC------CCC
Q 048755 82 WG--SLDLEAIGIPVADDNGGCKVLL--TARSQDVL--SCKMDCQQNFVVDVLNEKEAWSLFKKMT---GD------CIE 146 (674)
Q Consensus 82 ~~--~~~~~~l~~~~~~~~~gs~ilv--Ttr~~~~~--~~~~~~~~~~~l~~L~~~~~~~lf~~~~---~~------~~~ 146 (674)
.. ..|-+.+ +|--..|+.++| ||.++... ........++.++.|..++...++.+.. ++ ..+
T Consensus 232 HRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~ 308 (554)
T KOG2028|consen 232 HRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLP 308 (554)
T ss_pred hhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCC
Confidence 63 3343322 344566877777 66665432 2223456789999999999999988733 21 111
Q ss_pred CCc---hhHHHHHHHHHhCCchh
Q 048755 147 NGE---LKSVATEVVKECAGLPI 166 (674)
Q Consensus 147 ~~~---~~~~~~~i~~~c~g~Pl 166 (674)
.+. ...+.+-++..|.|-..
T Consensus 309 n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 309 NSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred CcchhhhHHHHHHHHHhcCchHH
Confidence 211 12355666677777654
No 102
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.47 E-value=0.00015 Score=48.39 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=18.5
Q ss_pred CccEEecCCCCchhchHhhcCCCCCcEEeCCCC
Q 048755 400 KLEILTLRGSDMEKLVEEMGELTQLRLLDLSYC 432 (674)
Q Consensus 400 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 432 (674)
+|++|++++|+++.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 455556666666666555566666666666655
No 103
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.0017 Score=70.47 Aligned_cols=100 Identities=8% Similarity=0.040 Sum_probs=64.8
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCC-hhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARS-QDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~-~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
++.-++|+|+|+.. ..++.+...+.......++|++|.+ ..+..........+++++++.++..+.+.+.+.... .
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg-i 201 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN-V 201 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC-C
Confidence 34558999999865 3466665555444455556555543 333322234457899999999999998887764211 1
Q ss_pred CchhHHHHHHHHHhCCchhhHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPV 171 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~ 171 (674)
....+....|++.++|.+..+..+
T Consensus 202 ~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 202 PAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 223467788999999987655444
No 104
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.0012 Score=70.43 Aligned_cols=152 Identities=11% Similarity=0.150 Sum_probs=90.1
Q ss_pred CCCcHHHHHHHHHHhhhhc-------------------ccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKEN-------------------NLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAW 62 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~-------------------~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 62 (674)
.|+||||+|+.++...--. ..|..++.++.+....++++ +++++.+....
T Consensus 47 ~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~i-R~l~~~~~~~p---------- 115 (509)
T PRK14958 47 RGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDT-RELLDNIPYAP---------- 115 (509)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHH-HHHHHHHhhcc----------
Confidence 6999999999999865421 12333555555444444443 34444332211
Q ss_pred HHHHHHHcCCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCCh-hhhhccCCCcceEecCCCCHHHHHHHHHH
Q 048755 63 RLLEQLKKETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQ-DVLSCKMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 63 ~~~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
..++.-++|+|+|+.. ...+++...+......+++|++|.+. .+..........+++++++.++..+.+..
T Consensus 116 ------~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~ 189 (509)
T PRK14958 116 ------TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQH 189 (509)
T ss_pred ------ccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHH
Confidence 1245668999999865 34555554444444566666655543 33221223446789999999998887766
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCchhhHHHH
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLPIAIVPV 171 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~ 171 (674)
.+.... .....+....|++.++|.+..+..+
T Consensus 190 il~~eg-i~~~~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 190 LLKEEN-VEFENAALDLLARAANGSVRDALSL 220 (509)
T ss_pred HHHHcC-CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 653211 1122456778889999988655443
No 105
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.45 E-value=9e-06 Score=67.36 Aligned_cols=90 Identities=16% Similarity=0.257 Sum_probs=72.6
Q ss_pred CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCC-cccccCcCCccEEec
Q 048755 328 ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGD-IAIIGDLKKLEILTL 406 (674)
Q Consensus 328 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l 406 (674)
....|...++++|...++|+.+-.+++.+..|++++|.+..+|..+..++.|+.|+++.|.+.. |..+..|.+|-.|+.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 4456777788888888888887777788888888888888888888888888888888887766 677777888888888
Q ss_pred CCCCchhchHh
Q 048755 407 RGSDMEKLVEE 417 (674)
Q Consensus 407 ~~~~~~~lp~~ 417 (674)
.++.+..+|-.
T Consensus 131 ~~na~~eid~d 141 (177)
T KOG4579|consen 131 PENARAEIDVD 141 (177)
T ss_pred CCCccccCcHH
Confidence 88877777743
No 106
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.45 E-value=0.0011 Score=73.64 Aligned_cols=142 Identities=18% Similarity=0.253 Sum_probs=78.6
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH-cCCcEEEEEe
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLK-KETKILIILD 79 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~kr~LlVlD 79 (674)
.+|+||||+|+.+++..... |. .++.+. ....++ ++++ ....+.+. .+++.+||+|
T Consensus 60 PpGtGKTTLA~aIA~~~~~~--f~---~lna~~-~~i~di-r~~i----------------~~a~~~l~~~~~~~IL~ID 116 (725)
T PRK13341 60 PPGVGKTTLARIIANHTRAH--FS---SLNAVL-AGVKDL-RAEV----------------DRAKERLERHGKRTILFID 116 (725)
T ss_pred CCCCCHHHHHHHHHHHhcCc--ce---eehhhh-hhhHHH-HHHH----------------HHHHHHhhhcCCceEEEEe
Confidence 37999999999999876533 41 122211 011110 1111 11111111 2467899999
Q ss_pred CCCCc--cchhhccCCcCCCCCCeEEEEE--eCChh--hhhccCCCcceEecCCCCHHHHHHHHHHHhCC------CCCC
Q 048755 80 DIWGS--LDLEAIGIPVADDNGGCKVLLT--ARSQD--VLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGD------CIEN 147 (674)
Q Consensus 80 dv~~~--~~~~~l~~~~~~~~~gs~ilvT--tr~~~--~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~------~~~~ 147 (674)
||+.. .+.+.+...+ ..|+.++++ |.+.. +..........+++++++.++...++.+.+.. ....
T Consensus 117 EIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v 193 (725)
T PRK13341 117 EVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKV 193 (725)
T ss_pred ChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCccc
Confidence 99754 3455544322 336666664 33321 11111223467999999999999998876631 1122
Q ss_pred CchhHHHHHHHHHhCCchhhH
Q 048755 148 GELKSVATEVVKECAGLPIAI 168 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal 168 (674)
.-..++...|++.+.|.-..+
T Consensus 194 ~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 194 DLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred CCCHHHHHHHHHhCCCCHHHH
Confidence 334567788888888875433
No 107
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.44 E-value=0.00019 Score=63.98 Aligned_cols=81 Identities=20% Similarity=0.299 Sum_probs=40.0
Q ss_pred CCcEEEcCCcCCCCcccccCcCCccEEecCCCCchhchHhhcC-CCCCcEEeCCCCCCCCCCCh-hhhhCCCCCCeEEec
Q 048755 378 NLQTLSLDFCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGE-LTQLRLLDLSYCFNLQVIPP-NVISSLSRLEELYIG 455 (674)
Q Consensus 378 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~-l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~ 455 (674)
+...+||+.|.+.....+..+..|.+|.+..|+|+.+-+.+.. +++|..|.+.+|+ +..+.. .-+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeec
Confidence 4455555555555445555555556666655555555433332 3455555555542 211111 114455566666655
Q ss_pred cCCC
Q 048755 456 QSPI 459 (674)
Q Consensus 456 ~~~~ 459 (674)
+|+.
T Consensus 122 ~Npv 125 (233)
T KOG1644|consen 122 GNPV 125 (233)
T ss_pred CCch
Confidence 5544
No 108
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.0013 Score=70.82 Aligned_cols=153 Identities=13% Similarity=0.141 Sum_probs=88.7
Q ss_pred CCCcHHHHHHHHHHhhhhc-------------------ccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKEN-------------------NLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAW 62 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~-------------------~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 62 (674)
.|+||||+|+.++....-+ ..|..+++++.+....+++ .+++++.+....
T Consensus 47 ~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~-ir~l~~~~~~~p---------- 115 (527)
T PRK14969 47 RGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDA-MRELLDNAQYAP---------- 115 (527)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHH-HHHHHHHHhhCc----------
Confidence 6999999999998776321 1132344444433323222 233333321110
Q ss_pred HHHHHHHcCCcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCChh-hhhccCCCcceEecCCCCHHHHHHHHHH
Q 048755 63 RLLEQLKKETKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQD-VLSCKMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 63 ~~~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~-~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
..+++-++|+|+++... ..+.+...+......+++|.+|.+.. +..........+++++++.++..+.+.+
T Consensus 116 ------~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~ 189 (527)
T PRK14969 116 ------TRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQH 189 (527)
T ss_pred ------ccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 12467799999998653 35555545544445666666665433 2211122346889999999999988877
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCchhhHHHHH
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLPIAIVPVA 172 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~ 172 (674)
.+.... .....+....|++.++|.+..+..+.
T Consensus 190 il~~eg-i~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 190 ILEQEN-IPFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred HHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 663111 12234567888999999886444433
No 109
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.42 E-value=2.1e-05 Score=85.38 Aligned_cols=109 Identities=21% Similarity=0.253 Sum_probs=55.5
Q ss_pred cCCCcceEEEecCcc-cCC--CCcccccccCCcEEEcCCc-C-CCC-----cccccCcCCccEEecCCCC-chhc--hHh
Q 048755 351 TGMTELRVLDFTEMH-LLA--LPSSLGLLQNLQTLSLDFC-I-LGD-----IAIIGDLKKLEILTLRGSD-MEKL--VEE 417 (674)
Q Consensus 351 ~~~~~Lr~L~l~~~~-~~~--lp~~~~~l~~L~~L~l~~~-~-~~~-----~~~~~~l~~L~~L~l~~~~-~~~l--p~~ 417 (674)
..++.|+.|.+.++. +.. +-.....+++|+.|++++| . ... ......+++|+.|+++++. ++.. ...
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 336677777776663 232 2233456677777777763 1 111 1223345666666666664 4421 122
Q ss_pred hcCCCCCcEEeCCCCCCCCCCCh-hhhhCCCCCCeEEeccCCC
Q 048755 418 MGELTQLRLLDLSYCFNLQVIPP-NVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 418 ~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 459 (674)
...+++|++|.+.+|..++...- .+...+++|++|++.+|..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 22356666666666654332221 2234556666666665543
No 110
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.41 E-value=0.00057 Score=60.37 Aligned_cols=96 Identities=16% Similarity=0.079 Sum_probs=52.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+++++..... -..++++++............+... ............++.++|+||+
T Consensus 28 ~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~lilDe~ 93 (151)
T cd00009 28 PGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------------LVRLLFELAEKAKPGVLFIDEI 93 (151)
T ss_pred CCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh------------hHhHHHHhhccCCCeEEEEeCh
Confidence 6999999999999988632 2347777776544322222111110 0111111122346889999999
Q ss_pred CCc-----cchhhccCCcCCC---CCCeEEEEEeCChh
Q 048755 82 WGS-----LDLEAIGIPVADD---NGGCKVLLTARSQD 111 (674)
Q Consensus 82 ~~~-----~~~~~l~~~~~~~---~~gs~ilvTtr~~~ 111 (674)
+.. ..+.......... ..+..+|+||....
T Consensus 94 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 94 DSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 853 1222222222221 35778888887554
No 111
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0031 Score=64.02 Aligned_cols=99 Identities=11% Similarity=0.090 Sum_probs=62.2
Q ss_pred cCCcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCCh-hhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCC
Q 048755 70 KETKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQ-DVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIE 146 (674)
Q Consensus 70 ~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 146 (674)
.+++-++|+|+++... ..+.+...+.....+..+|++|.+. .+..........+++.+++.++..+++.......
T Consensus 139 ~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~-- 216 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ-- 216 (351)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc--
Confidence 3567799999998653 3444444443333344544545443 3322122344799999999999999998743221
Q ss_pred CCchhHHHHHHHHHhCCchhhHHHH
Q 048755 147 NGELKSVATEVVKECAGLPIAIVPV 171 (674)
Q Consensus 147 ~~~~~~~~~~i~~~c~g~Plal~~~ 171 (674)
. ...+....++..++|.|.....+
T Consensus 217 ~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 217 G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 22456788999999999865443
No 112
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.36 E-value=0.00031 Score=62.63 Aligned_cols=99 Identities=21% Similarity=0.228 Sum_probs=51.7
Q ss_pred ceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC--cccccccCCcEEEcCCc
Q 048755 310 CTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP--SSLGLLQNLQTLSLDFC 387 (674)
Q Consensus 310 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~ 387 (674)
...+++.+|.+..++..-.++.|.+|.+..|.+..+.+..-..+++|..|.|.+|++.++- ..+..++.|++|.+-+|
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 3445555555555555445566666666666666655555444555666666666555431 23344555555555555
Q ss_pred CCCCc-----ccccCcCCccEEecCC
Q 048755 388 ILGDI-----AIIGDLKKLEILTLRG 408 (674)
Q Consensus 388 ~~~~~-----~~~~~l~~L~~L~l~~ 408 (674)
.++.- -.+..+++|++||+.+
T Consensus 124 pv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 124 PVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred chhcccCceeEEEEecCcceEeehhh
Confidence 44331 2344455555555443
No 113
>PRK04195 replication factor C large subunit; Provisional
Probab=97.36 E-value=0.0026 Score=68.21 Aligned_cols=150 Identities=17% Similarity=0.129 Sum_probs=85.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+||||+|++++++.. |+ ++-++.++..+... .++++....... .+.+.++-+||+|++
T Consensus 48 pG~GKTtla~ala~el~----~~-~ielnasd~r~~~~-i~~~i~~~~~~~--------------sl~~~~~kvIiIDEa 107 (482)
T PRK04195 48 PGVGKTSLAHALANDYG----WE-VIELNASDQRTADV-IERVAGEAATSG--------------SLFGARRKLILLDEV 107 (482)
T ss_pred CCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHH-HHHHHHHhhccC--------------cccCCCCeEEEEecC
Confidence 69999999999999874 32 34445555443333 233332221110 011125789999999
Q ss_pred CCccc------hhhccCCcCCCCCCeEEEEEeCChhhh-h-ccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCCchhHH
Q 048755 82 WGSLD------LEAIGIPVADDNGGCKVLLTARSQDVL-S-CKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSV 153 (674)
Q Consensus 82 ~~~~~------~~~l~~~~~~~~~gs~ilvTtr~~~~~-~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~ 153 (674)
+.... +..+...+. . .+..||+|+.+..-. . ........+++.+++.++....+.+.+..... .-..++
T Consensus 108 D~L~~~~d~~~~~aL~~~l~-~-~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi-~i~~ea 184 (482)
T PRK04195 108 DGIHGNEDRGGARAILELIK-K-AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGI-ECDDEA 184 (482)
T ss_pred cccccccchhHHHHHHHHHH-c-CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHH
Confidence 86421 343432222 1 233455555432211 1 11234567899999999999988877642111 123567
Q ss_pred HHHHHHHhCCchhhHHHHHHH
Q 048755 154 ATEVVKECAGLPIAIVPVAKA 174 (674)
Q Consensus 154 ~~~i~~~c~g~Plal~~~~~~ 174 (674)
...|++.++|-...+......
T Consensus 185 L~~Ia~~s~GDlR~ain~Lq~ 205 (482)
T PRK04195 185 LKEIAERSGGDLRSAINDLQA 205 (482)
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 899999999977655443333
No 114
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.0045 Score=63.27 Aligned_cols=96 Identities=9% Similarity=0.005 Sum_probs=64.2
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+||++.. ...+.+...+.....++.+|++|.+.... .......+.+.+.+++.+++.+.+.+.....
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~--- 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL--- 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---
Confidence 56779999999865 33455544444444566677777765433 2223456789999999999999998765321
Q ss_pred CchhHHHHHHHHHhCCchhhHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPV 171 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~ 171 (674)
..+....++..++|.|..+..+
T Consensus 217 --~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 217 --PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred --CHHHHHHHHHHcCCCHHHHHHH
Confidence 1122367899999999865443
No 115
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.32 E-value=0.0022 Score=68.70 Aligned_cols=99 Identities=10% Similarity=0.042 Sum_probs=61.0
Q ss_pred CcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCCh-hhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755 72 TKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQ-DVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG 148 (674)
Q Consensus 72 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 148 (674)
++-++|+|+++.. ..++++...+........+|++|... .+..........+++.+++.++....+.+.+.... ..
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~keg-i~ 197 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEK-IK 197 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcC-CC
Confidence 3446999999764 34555554444444455565555433 33221223457899999999999988887664211 11
Q ss_pred chhHHHHHHHHHhCCchhhHHHH
Q 048755 149 ELKSVATEVVKECAGLPIAIVPV 171 (674)
Q Consensus 149 ~~~~~~~~i~~~c~g~Plal~~~ 171 (674)
-..+.+..+++.++|.+..+..+
T Consensus 198 Is~eal~~La~lS~GdlR~Alnl 220 (605)
T PRK05896 198 IEDNAIDKIADLADGSLRDGLSI 220 (605)
T ss_pred CCHHHHHHHHHHcCCcHHHHHHH
Confidence 22466888999999977544333
No 116
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0032 Score=64.87 Aligned_cols=94 Identities=11% Similarity=0.010 Sum_probs=60.9
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+|+++.. ...+.+...+.....+..+|++|.+.... .........+.+++++.++..+.+.+..+
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----- 190 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----- 190 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----
Confidence 45568888999865 23444544444444566667766664332 22223457899999999999988875432
Q ss_pred CchhHHHHHHHHHhCCchhhHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVP 170 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~ 170 (674)
...+.+..++..++|.|.....
T Consensus 191 -~~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 191 -VDPETARRAARASQGHIGRARR 212 (394)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHH
Confidence 1135577889999999865433
No 117
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.29 E-value=0.0023 Score=66.11 Aligned_cols=142 Identities=20% Similarity=0.247 Sum_probs=78.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+++++..... |- .+. ..++.... ++ ........+.+......+.+|++||+
T Consensus 165 pGtGKT~lakaia~~l~~~--~~-----~v~----~~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEi 224 (364)
T TIGR01242 165 PGTGKTLLAKAVAHETNAT--FI-----RVV----GSELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEI 224 (364)
T ss_pred CCCCHHHHHHHHHHhCCCC--EE-----ecc----hHHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhh
Confidence 6999999999999977644 32 221 11111111 10 01112233344444456789999998
Q ss_pred CCcc----------------chhhccCCcCC--CCCCeEEEEEeCChhhhhc----cCCCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGSL----------------DLEAIGIPVAD--DNGGCKVLLTARSQDVLSC----KMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~~----------------~~~~l~~~~~~--~~~gs~ilvTtr~~~~~~~----~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+... .+..+...+.. ...+.+||.||...+.... .......+.++..+.++..++|..
T Consensus 225 D~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~ 304 (364)
T TIGR01242 225 DAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKI 304 (364)
T ss_pred hhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHH
Confidence 6431 11122211111 1236678888875443311 112345789999999999999998
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCch
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLP 165 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~P 165 (674)
++......+.. -...+++.+.|..
T Consensus 305 ~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 305 HTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred HHhcCCCCccC--CHHHHHHHcCCCC
Confidence 87532222111 1467777777754
No 118
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.29 E-value=0.0047 Score=63.84 Aligned_cols=101 Identities=9% Similarity=0.033 Sum_probs=64.2
Q ss_pred CcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCChhh-hhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755 72 TKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQDV-LSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG 148 (674)
Q Consensus 72 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~-~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 148 (674)
++-++|+|+++.. ...+.+...+......+.+|++|.+... ..........+++.+++.++..+.+..++..... .
T Consensus 117 ~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~ 195 (355)
T TIGR02397 117 KYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-K 195 (355)
T ss_pred CceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-C
Confidence 4568899998755 3355554444444456666677655442 2212233467889999999999988877642111 1
Q ss_pred chhHHHHHHHHHhCCchhhHHHHHH
Q 048755 149 ELKSVATEVVKECAGLPIAIVPVAK 173 (674)
Q Consensus 149 ~~~~~~~~i~~~c~g~Plal~~~~~ 173 (674)
-..+.+..+++.++|.|..+.....
T Consensus 196 i~~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 196 IEDEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred CCHHHHHHHHHHcCCChHHHHHHHH
Confidence 2246788899999999876655443
No 119
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.27 E-value=0.0044 Score=62.98 Aligned_cols=152 Identities=13% Similarity=0.087 Sum_probs=82.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCce-EEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEK-VISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.|+||||+|+.+++...... +.. ++-++.+.......+.+.+.+...... .....+-++|+|+
T Consensus 47 ~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~~~~~vviiDe 110 (319)
T PRK00440 47 PGTGKTTAALALARELYGED-WRENFLELNASDERGIDVIRNKIKEFARTAP---------------VGGAPFKIIFLDE 110 (319)
T ss_pred CCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchHHHHHHHHHHHhcCC---------------CCCCCceEEEEeC
Confidence 69999999999999875432 211 222222332222211111111110000 0012356899999
Q ss_pred CCCcc--chhhccCCcCCCCCCeEEEEEeCChh-hhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHH
Q 048755 81 IWGSL--DLEAIGIPVADDNGGCKVLLTARSQD-VLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEV 157 (674)
Q Consensus 81 v~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~-~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i 157 (674)
++... ....+...+......+++|+++..+. ...........+++++++.++....+...+.... ..-..+....+
T Consensus 111 ~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~-~~i~~~al~~l 189 (319)
T PRK00440 111 ADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEG-IEITDDALEAI 189 (319)
T ss_pred cccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHH
Confidence 87542 23334333333344566777664332 1111112345789999999999998888774211 12235678899
Q ss_pred HHHhCCchhhHHH
Q 048755 158 VKECAGLPIAIVP 170 (674)
Q Consensus 158 ~~~c~g~Plal~~ 170 (674)
++.++|.+..+..
T Consensus 190 ~~~~~gd~r~~~~ 202 (319)
T PRK00440 190 YYVSEGDMRKAIN 202 (319)
T ss_pred HHHcCCCHHHHHH
Confidence 9999998765433
No 120
>PRK04132 replication factor C small subunit; Provisional
Probab=97.27 E-value=0.0062 Score=68.24 Aligned_cols=154 Identities=11% Similarity=0.040 Sum_probs=96.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+||||+|.+++++.-.++.-..++-+++|+....+.+.+.|-+....... ...+.-++|+|++
T Consensus 575 h~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~---------------~~~~~KVvIIDEa 639 (846)
T PRK04132 575 TVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPI---------------GGASFKIIFLDEA 639 (846)
T ss_pred CcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCc---------------CCCCCEEEEEECc
Confidence 4799999999999987543211347888998866665444333222211110 0124679999999
Q ss_pred CCcc--chhhccCCcCCCCCCeEEEEEeCChh-hhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHH
Q 048755 82 WGSL--DLEAIGIPVADDNGGCKVLLTARSQD-VLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVV 158 (674)
Q Consensus 82 ~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~-~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~ 158 (674)
+... +.+++...+......+++|.++.+.. +..........+++.+++.++....+.+.+.... ..-..+....|+
T Consensus 640 D~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~i~~e~L~~Ia 718 (846)
T PRK04132 640 DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LELTEEGLQAIL 718 (846)
T ss_pred ccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHH
Confidence 8763 45555544444444566666655543 3222234467999999999999988877654211 112246788999
Q ss_pred HHhCCchhhHHHH
Q 048755 159 KECAGLPIAIVPV 171 (674)
Q Consensus 159 ~~c~g~Plal~~~ 171 (674)
+.++|.+..+..+
T Consensus 719 ~~s~GDlR~AIn~ 731 (846)
T PRK04132 719 YIAEGDMRRAINI 731 (846)
T ss_pred HHcCCCHHHHHHH
Confidence 9999988554433
No 121
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.26 E-value=0.00013 Score=67.83 Aligned_cols=196 Identities=16% Similarity=0.112 Sum_probs=97.1
Q ss_pred cccCcCCccEEecCCCCch-hch----HhhcCCCCCcEEeCCCCCCCCCCChhh-------------hhCCCCCCeEEec
Q 048755 394 IIGDLKKLEILTLRGSDME-KLV----EEMGELTQLRLLDLSYCFNLQVIPPNV-------------ISSLSRLEELYIG 455 (674)
Q Consensus 394 ~~~~l~~L~~L~l~~~~~~-~lp----~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------l~~l~~L~~L~l~ 455 (674)
.+-+|++|+..+++.|.+. ..| ..+.+-+.|.||.+++|. ++.+..+- ...-|.|+++...
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 3445566666666666443 222 335566677777776663 22222111 2345677777777
Q ss_pred cCCCccccccccCCcccccchhhhcCCCCccEEEeeeccCCCC------CcccccccCccEEEEEEcccccccCCCCccc
Q 048755 456 QSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTL------PRDLSFFKMLQRYRISIGYDWWSVGPWDGIS 529 (674)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 529 (674)
.|.+.-. ........+....+|+.+.|..|.+..- -..+..+.+|+.|++..+....
T Consensus 166 rNRleng--------s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~--------- 228 (388)
T COG5238 166 RNRLENG--------SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL--------- 228 (388)
T ss_pred cchhccC--------cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh---------
Confidence 7665211 1122334444556788888887764311 1123566778888887654320
Q ss_pred ceeEEeecCCCceecchhHHhhhccccEEEecCCCCc----cccccCCCCCCccccceeeeccccCceeeeec--CCCCC
Q 048755 530 RKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDM----KNVLCEPGREVFPKLNRLQIEHNGNLVRLVDT--MDCTP 603 (674)
Q Consensus 530 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~----~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~ 603 (674)
. ............+.|++|.+.+|--. ......+....+|+|..|...++..-..+... ...+
T Consensus 229 -----~-----gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~- 297 (388)
T COG5238 229 -----E-----GSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEF- 297 (388)
T ss_pred -----h-----hHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhh-
Confidence 0 00011111122355777777766421 11222222234677887777765321111110 0111
Q ss_pred CCCCCCCccccccccC
Q 048755 604 APTIAFPLLESLFLRD 619 (674)
Q Consensus 604 ~~~~~~~~L~~L~l~~ 619 (674)
..+.+|-|..|.+.+
T Consensus 298 -e~~~~p~L~~le~ng 312 (388)
T COG5238 298 -EQDAVPLLVDLERNG 312 (388)
T ss_pred -hhcccHHHHHHHHcc
Confidence 455677777777765
No 122
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.25 E-value=0.0047 Score=59.85 Aligned_cols=167 Identities=14% Similarity=0.095 Sum_probs=98.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCc----eEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHH-HHHHHHcCCcEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFE----KVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWR-LLEQLKKETKILI 76 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~----~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~l~~~kr~Ll 76 (674)
+|.|||+++++++........=+ .|+.|.+....+...++..|+++++.+............ ..+-+..-+-=+|
T Consensus 70 snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmL 149 (302)
T PF05621_consen 70 SNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRML 149 (302)
T ss_pred CCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 58999999999998765431111 377788888899999999999999988755444443333 3344444356689
Q ss_pred EEeCCCCc------cc--hhhccCCcCCCCCCeEEEEEeCChhhhhc----cCCCcceEecCCCCHHH-HHHHHHHHh--
Q 048755 77 ILDDIWGS------LD--LEAIGIPVADDNGGCKVLLTARSQDVLSC----KMDCQQNFVVDVLNEKE-AWSLFKKMT-- 141 (674)
Q Consensus 77 VlDdv~~~------~~--~~~l~~~~~~~~~gs~ilvTtr~~~~~~~----~~~~~~~~~l~~L~~~~-~~~lf~~~~-- 141 (674)
|+|++.+. ++ .-.....+.+.-.=+-|.+-|++...+.. ..+...++.++.-..++ ..+|+....
T Consensus 150 IIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~ 229 (302)
T PF05621_consen 150 IIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERA 229 (302)
T ss_pred EeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHh
Confidence 99999764 11 11112223333334456666654333210 01223456666655444 344443222
Q ss_pred -C-CCCCCCchhHHHHHHHHHhCCchhhH
Q 048755 142 -G-DCIENGELKSVATEVVKECAGLPIAI 168 (674)
Q Consensus 142 -~-~~~~~~~~~~~~~~i~~~c~g~Plal 168 (674)
. .....-...+.+..|...++|+.--+
T Consensus 230 LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 230 LPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred CCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 2 22223345678999999999986443
No 123
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0029 Score=68.26 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=65.2
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCC-hhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARS-QDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~-~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+|+++.. ...+.+...+........+|++|.+ ..+..........+++++++.++..+.+.+.+.... .
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg-i 196 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG-V 196 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC-C
Confidence 46679999999765 3455555444433345556665554 333221223346889999999999998887664211 1
Q ss_pred CchhHHHHHHHHHhCCch-hhHHHHHHHH
Q 048755 148 GELKSVATEVVKECAGLP-IAIVPVAKAL 175 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~P-lal~~~~~~l 175 (674)
.-..+.++.|++.++|.+ .|+..+...+
T Consensus 197 ~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 197 DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 123467888999999965 5665554433
No 124
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.20 E-value=0.0032 Score=68.35 Aligned_cols=101 Identities=10% Similarity=0.059 Sum_probs=63.1
Q ss_pred CCcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCChh-hhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQD-VLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~-~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+|+++... ..+.+...+.......++|++|.+.. +.....+....+++.+++.++..+.+.+.+.... .
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg-i 196 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK-I 196 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC-C
Confidence 456789999998653 24444444433334556666665433 2211123346788889999999998887774211 1
Q ss_pred CchhHHHHHHHHHhCCchhhHHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPVA 172 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~~ 172 (674)
.-..+..+.|++.++|.+.-+..+.
T Consensus 197 ~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 197 AYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred CcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 2234678899999999886554443
No 125
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.18 E-value=0.0023 Score=61.35 Aligned_cols=142 Identities=11% Similarity=0.093 Sum_probs=80.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||+||+++++.....+ ..+++++...... .+ . ... +.-+||+||+
T Consensus 51 ~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~~~~------~~---------------------~-~~~-~~~~liiDdi 99 (227)
T PRK08903 51 AGSGRSHLLQALVADASYGG--RNARYLDAASPLL------AF---------------------D-FDP-EAELYAVDDV 99 (227)
T ss_pred CCCCHHHHHHHHHHHHHhCC--CcEEEEehHHhHH------HH---------------------h-hcc-cCCEEEEeCh
Confidence 69999999999999765431 2345555533110 00 0 111 2347889999
Q ss_pred CCccch--hhccCCcCC-CCCCe-EEEEEeCChhhhhc-------cCCCcceEecCCCCHHHHHHHHHHHhCCCCCCCch
Q 048755 82 WGSLDL--EAIGIPVAD-DNGGC-KVLLTARSQDVLSC-------KMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGEL 150 (674)
Q Consensus 82 ~~~~~~--~~l~~~~~~-~~~gs-~ilvTtr~~~~~~~-------~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~ 150 (674)
+....+ ..+...+.. ...+. .+++|++....... .......++++++++++-..++.+.+... ...-.
T Consensus 100 ~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~-~v~l~ 178 (227)
T PRK08903 100 ERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAER-GLQLA 178 (227)
T ss_pred hhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHc-CCCCC
Confidence 754221 222222211 12233 46666664332110 11224688999999988777776644211 12233
Q ss_pred hHHHHHHHHHhCCchhhHHHHHHHH
Q 048755 151 KSVATEVVKECAGLPIAIVPVAKAL 175 (674)
Q Consensus 151 ~~~~~~i~~~c~g~Plal~~~~~~l 175 (674)
.++.+.+++...|.+..+..+...+
T Consensus 179 ~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 179 DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4678888889999998877666554
No 126
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.15 E-value=0.0051 Score=67.63 Aligned_cols=112 Identities=11% Similarity=-0.009 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEE--EeCChhhhhcc-CCCcceEecCCCCHHHHHH
Q 048755 61 AWRLLEQLKKETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLL--TARSQDVLSCK-MDCQQNFVVDVLNEKEAWS 135 (674)
Q Consensus 61 ~~~~~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv--Ttr~~~~~~~~-~~~~~~~~l~~L~~~~~~~ 135 (674)
+..+.+.+. .+++.++-|+.|.. ..|+.+...+....+...+++ ||++....... ......+.+.+++.++.+.
T Consensus 282 Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 282 QNKLLKVLE-DKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHh-hCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 334444444 46788886666543 346666655555555555665 56654332111 1223467889999999999
Q ss_pred HHHHHhCCCCCCCchhHHHHHHHHHhCCchhhHHHHHHH
Q 048755 136 LFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKA 174 (674)
Q Consensus 136 lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~ 174 (674)
++.+.+..... .-..++.+.|.+....-+.++..++..
T Consensus 361 Il~~~a~~~~v-~ls~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 361 IVLNAAEKINV-HLAAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 99987753211 111344444444444345565555433
No 127
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.15 E-value=0.0049 Score=64.74 Aligned_cols=153 Identities=16% Similarity=0.167 Sum_probs=88.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||.||+++++....+..=..++++++ .++...+...+... ....+.+.+.. .-+||+||+
T Consensus 145 ~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~~--~dlLiiDDi 208 (405)
T TIGR00362 145 VGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN--------KMEEFKEKYRS--VDLLLIDDI 208 (405)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC--------CHHHHHHHHHh--CCEEEEehh
Confidence 699999999999998875521123566643 34445555554321 11223333332 348999999
Q ss_pred CCcc---ch-hhccCCcCC-CCCCeEEEEEeCChh-hh-------hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755 82 WGSL---DL-EAIGIPVAD-DNGGCKVLLTARSQD-VL-------SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG 148 (674)
Q Consensus 82 ~~~~---~~-~~l~~~~~~-~~~gs~ilvTtr~~~-~~-------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 148 (674)
+... .+ +.+...+.. ...|..+|+|+.... .. .........+.+++.+.++-..++.+.+.... ..
T Consensus 209 ~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~-~~ 287 (405)
T TIGR00362 209 QFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEG-LE 287 (405)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC-CC
Confidence 7531 11 112111111 112445777776422 11 11222335789999999999999998885321 22
Q ss_pred chhHHHHHHHHHhCCchhhHHHH
Q 048755 149 ELKSVATEVVKECAGLPIAIVPV 171 (674)
Q Consensus 149 ~~~~~~~~i~~~c~g~Plal~~~ 171 (674)
-.+++...|++.+.|....+..+
T Consensus 288 l~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 288 LPDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred CCHHHHHHHHHhcCCCHHHHHHH
Confidence 23577888889988877654443
No 128
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.14 E-value=0.0041 Score=61.47 Aligned_cols=125 Identities=13% Similarity=0.104 Sum_probs=67.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+.++...........--++.++. .++. ..+... .. .....+.+.. ..-+|++|++
T Consensus 67 pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~----~~~~g~----~~-~~~~~~~~~a---~~gvL~iDEi 130 (284)
T TIGR02880 67 PGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLV----GQYIGH----TA-PKTKEILKRA---MGGVLFIDEA 130 (284)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHh----Hhhccc----ch-HHHHHHHHHc---cCcEEEEech
Confidence 69999999999988776543222222444432 2222 221111 11 1222333333 2368999999
Q ss_pred CCc-----------cchhhccCCcCCCCCCeEEEEEeCChhhhh-c------cCCCcceEecCCCCHHHHHHHHHHHhC
Q 048755 82 WGS-----------LDLEAIGIPVADDNGGCKVLLTARSQDVLS-C------KMDCQQNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 82 ~~~-----------~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~-~------~~~~~~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
... +.++.+...+.....+-+||.++....... . .......+++++++.+|...++...+.
T Consensus 131 ~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 131 YYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred hhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 632 112333333333444566666665432210 0 012246789999999999999988774
No 129
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=2.5e-05 Score=72.67 Aligned_cols=100 Identities=23% Similarity=0.202 Sum_probs=71.4
Q ss_pred CCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCCcccccCcCCccEEecCCCCchhch--HhhcCCCCCcEEeCC
Q 048755 353 MTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLRGSDMEKLV--EEMGELTQLRLLDLS 430 (674)
Q Consensus 353 ~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~ 430 (674)
+.+.+.|++-+|++..+.- ..+++.|++|.|+-|.++.+..+..+++|+.|+|+.|.|.++- ..+.++++|+.|.|.
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 4566777777887765421 2367788888888888888888888888888888888777665 346788888888887
Q ss_pred CCCCCCCCCh----hhhhCCCCCCeEE
Q 048755 431 YCFNLQVIPP----NVISSLSRLEELY 453 (674)
Q Consensus 431 ~~~~~~~~~~----~~l~~l~~L~~L~ 453 (674)
.|+-....+. ..+.-|++|++|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 7765555443 2356677777765
No 130
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.11 E-value=0.0042 Score=57.39 Aligned_cols=74 Identities=14% Similarity=0.091 Sum_probs=44.9
Q ss_pred EEEEEeCChhhhhc-cCCCcceEecCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHhCCchhhHHHHHHHHh
Q 048755 102 KVLLTARSQDVLSC-KMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKALK 176 (674)
Q Consensus 102 ~ilvTtr~~~~~~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~ 176 (674)
-|=.|||.-.+... ..+.....+++.++.+|-.++..+.+.-. .-+-..+.+.+|+.++.|-|.-+.-+-+.++
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l-~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL-NIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT-T-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh-CCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 34457776544321 12233456899999999999999877421 1233457899999999999976666555444
No 131
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.10 E-value=0.0076 Score=66.15 Aligned_cols=103 Identities=9% Similarity=0.036 Sum_probs=64.9
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCCh-hhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQ-DVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+|+++.. +..+.+...+......+.+|+++.+. .+..........+.+..++.++..+.+.+.+.....
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl- 197 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI- 197 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 35678999999755 34555544444444566666666543 232212234467889999999999888877642111
Q ss_pred CchhHHHHHHHHHhCCchhhHHHHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPVAKA 174 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~~~~ 174 (674)
....+.+..+++.++|.+..+...-..
T Consensus 198 ~i~~eal~~La~~s~Gdlr~al~~Lek 224 (585)
T PRK14950 198 NLEPGALEAIARAATGSMRDAENLLQQ 224 (585)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 123467889999999988765544433
No 132
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.0087 Score=60.23 Aligned_cols=95 Identities=11% Similarity=0.145 Sum_probs=62.1
Q ss_pred CcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCChhhhh-ccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755 72 TKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQDVLS-CKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG 148 (674)
Q Consensus 72 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 148 (674)
++=++|+|+++.. ...+++...+.....++.+|++|.+..... ......+.+.+.+++.+++.+.+.+....
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~----- 180 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE----- 180 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-----
Confidence 3445567999865 345555444444445777778887765432 22334578999999999999988765421
Q ss_pred chhHHHHHHHHHhCCchhhHHHH
Q 048755 149 ELKSVATEVVKECAGLPIAIVPV 171 (674)
Q Consensus 149 ~~~~~~~~i~~~c~g~Plal~~~ 171 (674)
...+.+..++..++|.|..+..+
T Consensus 181 ~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CChHHHHHHHHHcCCCHHHHHHH
Confidence 12344667889999999755443
No 133
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.10 E-value=4e-05 Score=83.13 Aligned_cols=235 Identities=18% Similarity=0.176 Sum_probs=128.8
Q ss_pred CcCCccEEecCCC-Cchh--chHhhcCCCCCcEEeCCCC-CCCCCCC---hhhhhCCCCCCeEEeccCCCccccccccCC
Q 048755 397 DLKKLEILTLRGS-DMEK--LVEEMGELTQLRLLDLSYC-FNLQVIP---PNVISSLSRLEELYIGQSPIMWGKVGGVDG 469 (674)
Q Consensus 397 ~l~~L~~L~l~~~-~~~~--lp~~~~~l~~L~~L~l~~~-~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 469 (674)
.+++|+.|.+.++ .+.. +-+....+++|+.|++++| ......+ ......+++|+.|++..+...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i--------- 256 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV--------- 256 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc---------
Confidence 3688888888877 4554 4456778888888888873 2222222 122455677888888776531
Q ss_pred cccccchhhhcC-CCCccEEEeeeccC---CCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecc
Q 048755 470 ERRNASLDELNN-LSKLTSLEILIQDE---KTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLN 545 (674)
Q Consensus 470 ~~~~~~~~~l~~-l~~L~~L~l~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 545 (674)
....+..+.. +++|+.|.+.++.. ..+-.....+++|++|+++.|... .....
T Consensus 257 --sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~---------------------~d~~l 313 (482)
T KOG1947|consen 257 --TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL---------------------TDSGL 313 (482)
T ss_pred --CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc---------------------hHHHH
Confidence 1222333332 66788887654441 222223366777888888766543 11112
Q ss_pred hhHHhhhccccEEEecCCCC---ccccccCCCCCCc-cccceeeeccccCceeeeecCCCCCCCCCCCCccc-cccccCc
Q 048755 546 EGHIMQLKGIEDLTLDGLPD---MKNVLCEPGREVF-PKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLE-SLFLRDL 620 (674)
Q Consensus 546 ~~~~~~l~~L~~L~L~~~~~---~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~-~L~l~~c 620 (674)
......+++|+.|.+..+.. ++........... -.+..+.+.+|+.++++.-.. .+ -.... .+.+.+|
T Consensus 314 ~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~------~~-~~~~~~~~~l~gc 386 (482)
T KOG1947|consen 314 EALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSY------CG-ISDLGLELSLRGC 386 (482)
T ss_pred HHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhh------hh-ccCcchHHHhcCC
Confidence 22234467777766655443 3332211111112 267777777777776653211 11 11222 5666777
Q ss_pred ccc-cccccCCCCccccCCccEEEEecCCCccccCCchhh--hhcccceecccccC
Q 048755 621 RNL-EEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIE--LTQLRTLELKNVFP 673 (674)
Q Consensus 621 ~~L-~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~--l~~L~~L~l~~c~~ 673 (674)
+.| ..+ ......+.+|+.|.+..|..+..-.-.... ..+++.+++.+|+.
T Consensus 387 ~~l~~~l---~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 387 PNLTESL---ELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cccchHH---HHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 777 333 222233445889999998876544222221 56678888887764
No 134
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09 E-value=0.0061 Score=68.75 Aligned_cols=100 Identities=10% Similarity=0.087 Sum_probs=63.2
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCCh-hhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQ-DVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|||+++.. ...+.++..+......+.+|++|.+. .+..........|++..++.++..+.+.+.+.... .
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-v 197 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-V 197 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-C
Confidence 45567899999865 34566655555555566666555443 33322234467899999999999988877653111 1
Q ss_pred CchhHHHHHHHHHhCCchhhHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPV 171 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~ 171 (674)
....+....|++.++|.+..+...
T Consensus 198 ~id~eal~lLa~~sgGdlR~Al~e 221 (824)
T PRK07764 198 PVEPGVLPLVIRAGGGSVRDSLSV 221 (824)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 123456678899999987544433
No 135
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.07 E-value=0.008 Score=66.00 Aligned_cols=102 Identities=13% Similarity=0.084 Sum_probs=63.2
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEe-CChhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTA-RSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTt-r~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+|+++.. ..+.++...+........+|++| +...+........+.+++.+++.++..+.+...+.... .
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg-I 195 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN-I 195 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC-C
Confidence 46668999999765 34666654444444455545444 43333222233457899999999999988887653111 1
Q ss_pred CchhHHHHHHHHHhCCchhhHHHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPVAK 173 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~~~ 173 (674)
....+++..+++.++|.+..+..+..
T Consensus 196 ~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 196 SYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 12245688899999998765544443
No 136
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.06 E-value=0.007 Score=65.84 Aligned_cols=101 Identities=8% Similarity=0.043 Sum_probs=64.6
Q ss_pred CCcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEe-CChhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTA-RSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTt-r~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+|+++... ..+.+...+.....++++|++| ....+..........+++..++.++..+.+.+.+.... .
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg-i 209 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG-V 209 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC-C
Confidence 345679999997653 3555555554444566665555 33333322223457899999999999999888764211 1
Q ss_pred CchhHHHHHHHHHhCCchhhHHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPVA 172 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~~ 172 (674)
....+....|++.++|.+..+....
T Consensus 210 ~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 210 EVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2224678889999999886655443
No 137
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.06 E-value=0.0081 Score=63.35 Aligned_cols=173 Identities=13% Similarity=0.132 Sum_probs=98.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||.||+++++.......=..++|++. .++..++...+.... .....+.... +.-+||+||+
T Consensus 139 ~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~~--------~~~f~~~~~~-~~dvLlIDDi 203 (440)
T PRK14088 139 VGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEGK--------LNEFREKYRK-KVDVLLIDDV 203 (440)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhccc--------HHHHHHHHHh-cCCEEEEech
Confidence 699999999999998765421124666654 455666666553221 1223333332 3558999999
Q ss_pred CCc---cch-hhccCCcCC-CCCCeEEEEEeC-Chhhh-------hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755 82 WGS---LDL-EAIGIPVAD-DNGGCKVLLTAR-SQDVL-------SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG 148 (674)
Q Consensus 82 ~~~---~~~-~~l~~~~~~-~~~gs~ilvTtr-~~~~~-------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 148 (674)
+.. ..+ +.+...+.. ...|..||+||. .+... .........+++++.+.++-..++.+.+... ...
T Consensus 204 ~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~-~~~ 282 (440)
T PRK14088 204 QFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIE-HGE 282 (440)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhc-CCC
Confidence 743 111 112111111 122446888774 33222 1112334578999999999999998887521 122
Q ss_pred chhHHHHHHHHHhCCchhhHHHHHHHHh------cC--ChHHHHHHHHHh
Q 048755 149 ELKSVATEVVKECAGLPIAIVPVAKALK------NK--SLYEWRNALRQL 190 (674)
Q Consensus 149 ~~~~~~~~i~~~c~g~Plal~~~~~~l~------~~--~~~~w~~~l~~l 190 (674)
-..++...|++.+.|.-..+..+-..|. ++ +...-++++..+
T Consensus 283 l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 283 LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred CCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3357788888888886555444333332 22 555556666554
No 138
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.05 E-value=0.012 Score=58.18 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=82.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhC-CCCcccch---HHHHHH----HHH--HHH-c
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLG-LKIDEESE---TVRAWR----LLE--QLK-K 70 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~~~~---~~~~~~----~~~--~l~-~ 70 (674)
+|.|||.+.+++++....+ .+|+++-+.++...++++|+.+++ .+.++... .+.... +.+ ... .
T Consensus 39 sgTGKT~~~r~~l~~~n~~-----~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~ 113 (438)
T KOG2543|consen 39 SGTGKTYLVRQLLRKLNLE-----NVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNR 113 (438)
T ss_pred CCCchhHHHHHHHhhcCCc-----ceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhcc
Confidence 6999999999999988544 589999999999999999999986 33222211 111111 122 111 2
Q ss_pred CCcEEEEEeCCCCccchhhccCC----cCC-CCCCeEEEEEeCCh--hhhhccCCC--cceEecCCCCHHHHHHHHHHHh
Q 048755 71 ETKILIILDDIWGSLDLEAIGIP----VAD-DNGGCKVLLTARSQ--DVLSCKMDC--QQNFVVDVLNEKEAWSLFKKMT 141 (674)
Q Consensus 71 ~kr~LlVlDdv~~~~~~~~l~~~----~~~-~~~gs~ilvTtr~~--~~~~~~~~~--~~~~~l~~L~~~~~~~lf~~~~ 141 (674)
++.++||||+++...|.+++.-+ +.. ......+|+++-.. ..-...++. ...+..+..+.+|..+++.+.-
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 46899999999877665543111 100 11123344444322 211111232 2356778899999999987543
No 139
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.04 E-value=0.011 Score=62.98 Aligned_cols=101 Identities=8% Similarity=0.035 Sum_probs=62.2
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCCh-hhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQ-DVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+|+++.. ...+++...+........+|++|.+. .+..........+++.+++.++....+.+.+.... .
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg-i 196 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK-I 196 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC-C
Confidence 46779999999765 23455544444444455555555433 22211123346889999999999988887664211 1
Q ss_pred CchhHHHHHHHHHhCCchhhHHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPVA 172 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~~ 172 (674)
....+.+..+++.++|.+..+....
T Consensus 197 ~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 197 EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2234667888899999876555444
No 140
>CHL00181 cbbX CbbX; Provisional
Probab=97.02 E-value=0.0094 Score=58.89 Aligned_cols=125 Identities=12% Similarity=0.112 Sum_probs=67.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+||||+|+.+++.......-...-|+.++ ..++.... .+.. . .....+.+.. ..-+|++|++
T Consensus 68 pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l~~~~---~g~~-----~-~~~~~~l~~a---~ggVLfIDE~ 131 (287)
T CHL00181 68 PGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDLVGQY---IGHT-----A-PKTKEVLKKA---MGGVLFIDEA 131 (287)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHHHHHH---hccc-----h-HHHHHHHHHc---cCCEEEEEcc
Confidence 7999999999999876543221111244444 12222211 1111 1 1122233332 2349999999
Q ss_pred CCc-----------cchhhccCCcCCCCCCeEEEEEeCChhhhh-------ccCCCcceEecCCCCHHHHHHHHHHHhC
Q 048755 82 WGS-----------LDLEAIGIPVADDNGGCKVLLTARSQDVLS-------CKMDCQQNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 82 ~~~-----------~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~-------~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
... +..+.+...+.....+.+||.++....... -.......+.+++++.+|..+++...+.
T Consensus 132 ~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 132 YYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred chhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHH
Confidence 642 122223333333344566777765433210 0123456789999999999999888774
No 141
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.01 E-value=0.0057 Score=65.15 Aligned_cols=172 Identities=17% Similarity=0.181 Sum_probs=97.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||+||+++++....+..-..+++++.. ++...+...+... ....+.+.+. +.-+||+||+
T Consensus 157 ~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~~dlLiiDDi 220 (450)
T PRK00149 157 VGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------TMEEFKEKYR--SVDVLLIDDI 220 (450)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHHh--cCCEEEEehh
Confidence 6999999999999998765211235555543 3344444444221 1123333333 3458999999
Q ss_pred CCcc---ch-hhccCCcCC-CCCCeEEEEEeCChh-hh-------hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755 82 WGSL---DL-EAIGIPVAD-DNGGCKVLLTARSQD-VL-------SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG 148 (674)
Q Consensus 82 ~~~~---~~-~~l~~~~~~-~~~gs~ilvTtr~~~-~~-------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 148 (674)
+... .+ +.+...+.. ...|..|++|+.... .. .........+++++.+.++...++.+.+... ...
T Consensus 221 ~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~-~~~ 299 (450)
T PRK00149 221 QFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEE-GID 299 (450)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHc-CCC
Confidence 6431 11 122111110 112445777776432 11 1123344678999999999999999888531 122
Q ss_pred chhHHHHHHHHHhCCchhhHHHHHHHHh------cC--ChHHHHHHHHHh
Q 048755 149 ELKSVATEVVKECAGLPIAIVPVAKALK------NK--SLYEWRNALRQL 190 (674)
Q Consensus 149 ~~~~~~~~i~~~c~g~Plal~~~~~~l~------~~--~~~~w~~~l~~l 190 (674)
-.+++..-|++.+.|....+..+-..|. ++ +....+++++.+
T Consensus 300 l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 300 LPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred CCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 3356788888988888765444433332 22 666666666654
No 142
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=5.8e-05 Score=70.35 Aligned_cols=97 Identities=21% Similarity=0.161 Sum_probs=61.2
Q ss_pred CCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCCc---ccccCcCCccEEe
Q 048755 329 CPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDI---AIIGDLKKLEILT 405 (674)
Q Consensus 329 ~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~---~~~~~l~~L~~L~ 405 (674)
+.+.+.|+..||.+.++.- ..+|+.|.||.|+-|.|+.+. .+..|++|+.|.|+.|.+..+ .-+.++++|++|.
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4456667777777666533 567788888888887777663 356777788887777766653 3345667777777
Q ss_pred cCCCCch-hch-----HhhcCCCCCcEEe
Q 048755 406 LRGSDME-KLV-----EEMGELTQLRLLD 428 (674)
Q Consensus 406 l~~~~~~-~lp-----~~~~~l~~L~~L~ 428 (674)
|..|... .-+ ..+.-|+||+.|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 7655321 111 1245566666664
No 143
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0044 Score=64.66 Aligned_cols=101 Identities=7% Similarity=0.008 Sum_probs=64.5
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCC-hhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARS-QDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~-~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+|+++.. ..++.+...+......+.+|++|.+ ..+..........+++++++.++..+.+...+... ..
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~-g~ 204 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAE-GI 204 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHc-CC
Confidence 35668899999865 3566665555555556666655543 33322112234678999999999998888776321 11
Q ss_pred CchhHHHHHHHHHhCCchhhHHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPVA 172 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~~ 172 (674)
.-..+.+..+++.++|.+.-+....
T Consensus 205 ~i~~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 205 SVDADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2335678899999999886554433
No 144
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.98 E-value=0.011 Score=63.97 Aligned_cols=99 Identities=12% Similarity=0.116 Sum_probs=61.6
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeC-ChhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTAR-SQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr-~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++=++|+|+++.. ...+++...+........+|++|. ...+..........+++.+++.++..+.+.+.+.... .
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg-i 195 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEG-V 195 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC-C
Confidence 45668899999765 345555555544444555555554 3433322223457899999999999888877664211 1
Q ss_pred CchhHHHHHHHHHhCCchhhHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVP 170 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~ 170 (674)
....+...-|++.++|.+..+..
T Consensus 196 ~i~~~al~~Ia~~s~GdlR~aln 218 (584)
T PRK14952 196 VVDDAVYPLVIRAGGGSPRDTLS 218 (584)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHH
Confidence 12245677888899998754333
No 145
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.96 E-value=0.015 Score=61.95 Aligned_cols=101 Identities=11% Similarity=0.060 Sum_probs=65.1
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+|+++.. +..+++...+......+++|++|.+..-. .........+++.+++.++..+.+...+.... .
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG-i 194 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG-V 194 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC-C
Confidence 35668999999765 33555544444444567767666654221 11123457899999999999998887664211 1
Q ss_pred CchhHHHHHHHHHhCCchhhHHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPVA 172 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~~ 172 (674)
....+.++.|++.++|.+..+..+.
T Consensus 195 ~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 195 SYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 2234678899999999886555443
No 146
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.94 E-value=0.003 Score=54.58 Aligned_cols=63 Identities=19% Similarity=0.194 Sum_probs=37.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCC-cEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKET-KILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~k-r~LlVlDd 80 (674)
.|+||||+|+.++++.... ++.++.+.-.+. ...........+.+...... +.+|++||
T Consensus 7 ~G~GKT~l~~~la~~l~~~-----~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~vl~iDe 66 (132)
T PF00004_consen 7 PGTGKTTLARALAQYLGFP-----FIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPCVLFIDE 66 (132)
T ss_dssp TTSSHHHHHHHHHHHTTSE-----EEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSEEEEEET
T ss_pred CCCCeeHHHHHHHhhcccc-----cccccccccccc---------------cccccccccccccccccccccceeeeecc
Confidence 6999999999999998532 344544432100 11122223344444444333 89999999
Q ss_pred CCCc
Q 048755 81 IWGS 84 (674)
Q Consensus 81 v~~~ 84 (674)
++..
T Consensus 67 ~d~l 70 (132)
T PF00004_consen 67 IDKL 70 (132)
T ss_dssp GGGT
T ss_pred chhc
Confidence 9643
No 147
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.014 Score=64.05 Aligned_cols=99 Identities=8% Similarity=0.059 Sum_probs=63.4
Q ss_pred CcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEe-CChhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755 72 TKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTA-RSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG 148 (674)
Q Consensus 72 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTt-r~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 148 (674)
++=++|+|+++... .++.+...+.....++.+|++| +...+..........+++.+++.++....+.+.+.... ..
T Consensus 121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg-i~ 199 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG-IT 199 (614)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC-CC
Confidence 45588999998653 4556655554444566655555 43444332234567899999999999998887664211 12
Q ss_pred chhHHHHHHHHHhCCchhhHHHH
Q 048755 149 ELKSVATEVVKECAGLPIAIVPV 171 (674)
Q Consensus 149 ~~~~~~~~i~~~c~g~Plal~~~ 171 (674)
...+.+..|++.++|...-+...
T Consensus 200 i~~~al~~La~~s~gdlr~al~~ 222 (614)
T PRK14971 200 AEPEALNVIAQKADGGMRDALSI 222 (614)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22356888999999977544443
No 148
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.93 E-value=0.0053 Score=70.02 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=91.3
Q ss_pred HcCCcEEEEEeCCCCccc-----hhhccCCcCC-CCCCeEEEE--EeCCh-hhhhccCCCcceEecCCCCHHHHHHHHHH
Q 048755 69 KKETKILIILDDIWGSLD-----LEAIGIPVAD-DNGGCKVLL--TARSQ-DVLSCKMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 69 ~~~kr~LlVlDdv~~~~~-----~~~l~~~~~~-~~~gs~ilv--Ttr~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
...|+..+|+||+.-.+. ...+...... ......|.. |.+.. ............+.+.||+..+.-.+...
T Consensus 151 ~~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~ 230 (849)
T COG3899 151 AEEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAA 230 (849)
T ss_pred hccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHH
Confidence 355799999999942211 1112111110 011112222 33322 11122234457899999999999999998
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCchhhHHHHHHHHhcC-------ChHHHHHHHHHhccccccCCCcccccceeeeeee
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLPIAIVPVAKALKNK-------SLYEWRNALRQLKRPFLRSFSGTQAVAAYSTIEL 212 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ 212 (674)
..+... ....+..+.|+++..|+|+-+..+-+.+... +...|..-+..+...... +.+...+..
T Consensus 231 ~l~~~~--~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~-------~~vv~~l~~ 301 (849)
T COG3899 231 TLGCTK--LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATT-------DAVVEFLAA 301 (849)
T ss_pred HhCCcc--cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhh-------HHHHHHHHH
Confidence 887432 3345778999999999999999988888742 455554333332221111 112234566
Q ss_pred cccCCChHHHHHHHHHhccc
Q 048755 213 SYYQLEGEELRRTFLLIGYA 232 (674)
Q Consensus 213 s~~~L~~~~l~~~f~~~a~f 232 (674)
-.+.||.. .++.....|++
T Consensus 302 rl~kL~~~-t~~Vl~~AA~i 320 (849)
T COG3899 302 RLQKLPGT-TREVLKAAACI 320 (849)
T ss_pred HHhcCCHH-HHHHHHHHHHh
Confidence 67888887 58887777776
No 149
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.92 E-value=7.5e-05 Score=62.04 Aligned_cols=102 Identities=22% Similarity=0.250 Sum_probs=60.8
Q ss_pred cceEEEecCcccCCC---CcccccccCCcEEEcCCcCCCC-cccc-cCcCCccEEecCCCCchhchHhhcCCCCCcEEeC
Q 048755 355 ELRVLDFTEMHLLAL---PSSLGLLQNLQTLSLDFCILGD-IAII-GDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDL 429 (674)
Q Consensus 355 ~Lr~L~l~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~-~~~~-~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l 429 (674)
.+..++|+.|.+-.+ +..++...+|...++++|.+.. |+.+ .+++.+.+|++.+|.+..+|.++..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 344556666654433 3445555666666777776655 4333 3455777777777777777777777777777777
Q ss_pred CCCCCCCCCChhhhhCCCCCCeEEeccCC
Q 048755 430 SYCFNLQVIPPNVISSLSRLEELYIGQSP 458 (674)
Q Consensus 430 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 458 (674)
+.|+. ...|.- +..|.+|..|+..++.
T Consensus 108 ~~N~l-~~~p~v-i~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 108 RFNPL-NAEPRV-IAPLIKLDMLDSPENA 134 (177)
T ss_pred ccCcc-ccchHH-HHHHHhHHHhcCCCCc
Confidence 77643 333333 3446666555554443
No 150
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.90 E-value=0.015 Score=63.75 Aligned_cols=103 Identities=10% Similarity=0.013 Sum_probs=63.3
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCChh-hhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQD-VLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~-~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+|+++.. +.++.+...+........+|++|.+.. +..........+++..++.++....+.+.+.... .
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~keg-i 198 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKES-I 198 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhC-C
Confidence 45568899999865 345666544444444555555554433 2221223456788899999998888777664211 1
Q ss_pred CchhHHHHHHHHHhCCchhhHHHHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPVAKA 174 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~~~~ 174 (674)
....+.+..+++.++|.+..+..+...
T Consensus 199 ~is~~al~~La~~s~G~lr~A~~lLek 225 (620)
T PRK14948 199 EIEPEALTLVAQRSQGGLRDAESLLDQ 225 (620)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 122356889999999988655544443
No 151
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.89 E-value=0.0051 Score=60.24 Aligned_cols=125 Identities=15% Similarity=0.235 Sum_probs=63.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+||||+|+.+++.......-....++.++. .++... .++. . ......+.+... ..+|++|++
T Consensus 51 pGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~----~~l~~~---~~g~-----~-~~~~~~~~~~a~---~~VL~IDE~ 114 (261)
T TIGR02881 51 PGTGKTTVARILGKLFKEMNVLSKGHLIEVER----ADLVGE---YIGH-----T-AQKTREVIKKAL---GGVLFIDEA 114 (261)
T ss_pred CCCCHHHHHHHHHHHHHhcCcccCCceEEecH----HHhhhh---hccc-----h-HHHHHHHHHhcc---CCEEEEech
Confidence 79999999999998764322111112233322 111111 1110 0 112223333222 348899999
Q ss_pred CCc----------cchhhccCCcCCCCCCeEEEEEeCChhhh-------hccCCCcceEecCCCCHHHHHHHHHHHhC
Q 048755 82 WGS----------LDLEAIGIPVADDNGGCKVLLTARSQDVL-------SCKMDCQQNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 82 ~~~----------~~~~~l~~~~~~~~~gs~ilvTtr~~~~~-------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
+.. +..+.+...+......-.+++++...+.. ....+....+++++++.++..+++.+.+.
T Consensus 115 ~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 115 YSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred hhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 742 12333433333333333555555433220 00112235688999999999999988774
No 152
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.88 E-value=0.0016 Score=66.97 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=52.8
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcc-cchHHHHHHHHHHHH--cCCcEEEE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDE-ESETVRAWRLLEQLK--KETKILII 77 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~l~--~~kr~LlV 77 (674)
++|+|||++|+++++....+..|+.+.||.++...+..++..-+- ..... ........++.+... .++++++|
T Consensus 202 ppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vli 277 (459)
T PRK11331 202 PPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFI 277 (459)
T ss_pred CCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC----CCCCCeEecCchHHHHHHHHHhcccCCcEEE
Confidence 589999999999999988777788999999999888777664321 11111 001111222222222 24689999
Q ss_pred EeCCCCc
Q 048755 78 LDDIWGS 84 (674)
Q Consensus 78 lDdv~~~ 84 (674)
+|++...
T Consensus 278 IDEINRa 284 (459)
T PRK11331 278 IDEINRA 284 (459)
T ss_pred Eehhhcc
Confidence 9998654
No 153
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.85 E-value=0.047 Score=55.57 Aligned_cols=175 Identities=11% Similarity=0.062 Sum_probs=101.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCC-CCcccchHHHHHHHHHHHHcCC-cEEEEEe
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGL-KIDEESETVRAWRLLEQLKKET-KILIILD 79 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~l~~~k-r~LlVlD 79 (674)
+|.|||.+...++.+......=-.++.+++..-.....++..|+..+-. ......+.+....+.++..+.+ -+++|+|
T Consensus 184 PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlD 263 (529)
T KOG2227|consen 184 PGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLD 263 (529)
T ss_pred CCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEec
Confidence 6999999999999988754211246778877666778888888877621 1111222333444444444443 7899999
Q ss_pred CCCCc--cchhhccCCcCC-CCCCeEEEEEe---------CChhhhhc-cCCCcceEecCCCCHHHHHHHHHHHhCCCCC
Q 048755 80 DIWGS--LDLEAIGIPVAD-DNGGCKVLLTA---------RSQDVLSC-KMDCQQNFVVDVLNEKEAWSLFKKMTGDCIE 146 (674)
Q Consensus 80 dv~~~--~~~~~l~~~~~~-~~~gs~ilvTt---------r~~~~~~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 146 (674)
+++.. ..-..+...|.| .-.++++|+.- |--..+.. ..-....+..++.+.++..+++..+......
T Consensus 264 EmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t 343 (529)
T KOG2227|consen 264 EMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST 343 (529)
T ss_pred hhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc
Confidence 98753 111222222222 22355554422 21111110 0112357888999999999999988864333
Q ss_pred CCchhHHHHHHHHHhCCchhhHHHHHHHHh
Q 048755 147 NGELKSVATEVVKECAGLPIAIVPVAKALK 176 (674)
Q Consensus 147 ~~~~~~~~~~i~~~c~g~Plal~~~~~~l~ 176 (674)
......+.+.++.++.|.--.++.+-...+
T Consensus 344 ~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 344 SIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred cccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 333334566666777666555544444444
No 154
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.77 E-value=0.019 Score=62.69 Aligned_cols=97 Identities=8% Similarity=-0.003 Sum_probs=60.9
Q ss_pred CCcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCC-hhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARS-QDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~-~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+|+++... ..+.+...+......+.+|++|.+ ..+..........+++.+++.++....+.+.+.... .
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg-i 204 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG-I 204 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC-C
Confidence 356678999997653 355555444444445555555543 333222234567899999999999888877663111 1
Q ss_pred CchhHHHHHHHHHhCCchhhH
Q 048755 148 GELKSVATEVVKECAGLPIAI 168 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal 168 (674)
.-..+.++.+++.++|....+
T Consensus 205 ~I~~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 205 QIDADALQLIARKAQGSMRDA 225 (620)
T ss_pred CCCHHHHHHHHHHhCCCHHHH
Confidence 123467888999999966533
No 155
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.76 E-value=0.013 Score=60.85 Aligned_cols=141 Identities=21% Similarity=0.293 Sum_probs=75.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+++++..... | +.++. .++.... .+ . .......+.+......+.+|++||+
T Consensus 174 pGtGKT~lAkaia~~~~~~--~-----i~v~~----~~l~~~~---~g-----~-~~~~i~~~f~~a~~~~p~IlfiDEi 233 (389)
T PRK03992 174 PGTGKTLLAKAVAHETNAT--F-----IRVVG----SELVQKF---IG-----E-GARLVRELFELAREKAPSIIFIDEI 233 (389)
T ss_pred CCCChHHHHHHHHHHhCCC--E-----EEeeh----HHHhHhh---cc-----c-hHHHHHHHHHHHHhcCCeEEEEech
Confidence 7999999999999976533 2 22211 1111110 11 0 1122333444444456789999998
Q ss_pred CCcc------------c----hhhccCCcCC--CCCCeEEEEEeCChhhhhc-cC---CCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGSL------------D----LEAIGIPVAD--DNGGCKVLLTARSQDVLSC-KM---DCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~~------------~----~~~l~~~~~~--~~~gs~ilvTtr~~~~~~~-~~---~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+... + ...+...+.. ...+.+||.||...+.... .. .....+.++..+.++..++|..
T Consensus 234 D~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~ 313 (389)
T PRK03992 234 DAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKI 313 (389)
T ss_pred hhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHH
Confidence 7430 1 1111111111 1235567777765443311 11 2345789999999999999998
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCc
Q 048755 140 MTGDCIENGELKSVATEVVKECAGL 164 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~ 164 (674)
++......... -...+++.+.|.
T Consensus 314 ~~~~~~~~~~~--~~~~la~~t~g~ 336 (389)
T PRK03992 314 HTRKMNLADDV--DLEELAELTEGA 336 (389)
T ss_pred HhccCCCCCcC--CHHHHHHHcCCC
Confidence 77532221111 145667777664
No 156
>PRK06620 hypothetical protein; Validated
Probab=96.74 E-value=0.0067 Score=57.11 Aligned_cols=94 Identities=13% Similarity=0.032 Sum_probs=56.1
Q ss_pred cEEEEEeCCCCccc--hhhccCCcCCCCCCeEEEEEeCChhhh------hccCCCcceEecCCCCHHHHHHHHHHHhCCC
Q 048755 73 KILIILDDIWGSLD--LEAIGIPVADDNGGCKVLLTARSQDVL------SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDC 144 (674)
Q Consensus 73 r~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTtr~~~~~------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 144 (674)
.-++++||++..++ .-++...+ ...|..|++|++..... ..+......+++++++.++...++.+.+...
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~--~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNII--NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHH--HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 35788899975432 11111111 13466888888754331 1122344589999999999888888776421
Q ss_pred CCCCchhHHHHHHHHHhCCchhhHH
Q 048755 145 IENGELKSVATEVVKECAGLPIAIV 169 (674)
Q Consensus 145 ~~~~~~~~~~~~i~~~c~g~Plal~ 169 (674)
.-.-.+++.+-|++.+.|--..+.
T Consensus 164 -~l~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 164 -SVTISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred -CCCCCHHHHHHHHHHccCCHHHHH
Confidence 122335677778888877654443
No 157
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.72 E-value=0.0049 Score=53.84 Aligned_cols=82 Identities=27% Similarity=0.174 Sum_probs=45.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+||||+|+.++....... ..++.++.+........... ...........................+..++++|++
T Consensus 11 ~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei 87 (148)
T smart00382 11 PGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEI 87 (148)
T ss_pred CCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 69999999999999887552 34666655543322222211 1111111112222333344444444433599999999
Q ss_pred CCccc
Q 048755 82 WGSLD 86 (674)
Q Consensus 82 ~~~~~ 86 (674)
.....
T Consensus 88 ~~~~~ 92 (148)
T smart00382 88 TSLLD 92 (148)
T ss_pred cccCC
Confidence 87643
No 158
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.029 Score=58.12 Aligned_cols=98 Identities=8% Similarity=0.036 Sum_probs=59.3
Q ss_pred CcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCCh-hhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755 72 TKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQ-DVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG 148 (674)
Q Consensus 72 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 148 (674)
++-++|+|+++... .++.+...+......+.+|++|..+ .+..........+++++++.++....+.+.+..... .
T Consensus 108 ~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~ 186 (367)
T PRK14970 108 KYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-K 186 (367)
T ss_pred CcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC-C
Confidence 45689999997543 3555543333333455555555433 222212234468899999999999888876642111 1
Q ss_pred chhHHHHHHHHHhCCchhhHHH
Q 048755 149 ELKSVATEVVKECAGLPIAIVP 170 (674)
Q Consensus 149 ~~~~~~~~i~~~c~g~Plal~~ 170 (674)
-..+.+..+++.++|.+..+..
T Consensus 187 i~~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 187 FEDDALHIIAQKADGALRDALS 208 (367)
T ss_pred CCHHHHHHHHHhCCCCHHHHHH
Confidence 2246788888999987654433
No 159
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.66 E-value=0.009 Score=62.05 Aligned_cols=112 Identities=24% Similarity=0.205 Sum_probs=70.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
-++||||+++.+....... .+.++.-+......-+.+.. .....+...++..++||.|
T Consensus 46 R~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~-----------------~~~~~~~~~~~~yifLDEI 103 (398)
T COG1373 46 RQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLL-----------------RAYIELKEREKSYIFLDEI 103 (398)
T ss_pred ccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHH-----------------HHHHHhhccCCceEEEecc
Confidence 3789999997776655433 45555433221111111111 1111111126899999999
Q ss_pred CCccchhhccCCcCCCCCCeEEEEEeCChhhh-----hccCCCcceEecCCCCHHHHHHH
Q 048755 82 WGSLDLEAIGIPVADDNGGCKVLLTARSQDVL-----SCKMDCQQNFVVDVLNEKEAWSL 136 (674)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~~-----~~~~~~~~~~~l~~L~~~~~~~l 136 (674)
+...+|+.....+...+.. +|++|+-+.... ....+....+++.||+-.|-..+
T Consensus 104 q~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 104 QNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred cCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 9999998876666665555 788888776554 22345567889999999998764
No 160
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.65 E-value=0.012 Score=59.24 Aligned_cols=81 Identities=14% Similarity=0.245 Sum_probs=54.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCce-EEEEEecC-CcCHHHHHHHHHHHhCCCCcccchHH------HHHHHHHHH-HcCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEK-VISSRVSQ-TPQIKEIQREIAEKLGLKIDEESETV------RAWRLLEQL-KKET 72 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~~~~l-~~~k 72 (674)
.|+|||||++.+++....+ +-+. ++|+.+.+ ...+.++++.+...+.....+..... ....+.+++ ..|+
T Consensus 142 pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~Gk 220 (380)
T PRK12608 142 PRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGK 220 (380)
T ss_pred CCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5999999999999988754 2233 46766764 45889999999887765432222211 222333333 3589
Q ss_pred cEEEEEeCCCC
Q 048755 73 KILIILDDIWG 83 (674)
Q Consensus 73 r~LlVlDdv~~ 83 (674)
+++||+|++..
T Consensus 221 dVVLvlDsltr 231 (380)
T PRK12608 221 DVVILLDSLTR 231 (380)
T ss_pred CEEEEEeCcHH
Confidence 99999999853
No 161
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.58 E-value=0.038 Score=58.65 Aligned_cols=129 Identities=14% Similarity=0.187 Sum_probs=68.2
Q ss_pred CCCcHHHHHHHHHHhhhhcc---cCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHH----HHcCCcE
Q 048755 2 GGIGKTTLVKEVGRQAKENN---LFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQ----LKKETKI 74 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~---~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~----l~~~kr~ 74 (674)
+|+|||++|+++++...... .+....++++... ++... ...+.+ .....+.+. ...++++
T Consensus 225 PGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~----eLl~k--------yvGete-~~ir~iF~~Ar~~a~~g~p~ 291 (512)
T TIGR03689 225 PGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP----ELLNK--------YVGETE-RQIRLIFQRAREKASDGRPV 291 (512)
T ss_pred CCCcHHHHHHHHHHhhccccccccCCceeEEeccch----hhccc--------ccchHH-HHHHHHHHHHHHHhhcCCCc
Confidence 69999999999999876431 1123445554431 11110 000111 111122222 2345799
Q ss_pred EEEEeCCCCc---------cch-----hhccCCcCCC--CCCeEEEEEeCChhhhh-ccC---CCcceEecCCCCHHHHH
Q 048755 75 LIILDDIWGS---------LDL-----EAIGIPVADD--NGGCKVLLTARSQDVLS-CKM---DCQQNFVVDVLNEKEAW 134 (674)
Q Consensus 75 LlVlDdv~~~---------~~~-----~~l~~~~~~~--~~gs~ilvTtr~~~~~~-~~~---~~~~~~~l~~L~~~~~~ 134 (674)
+|+||+++.. .+. ..+...+... ..+..||.||...+... ... +....++++..+.++..
T Consensus 292 IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~ 371 (512)
T TIGR03689 292 IVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAA 371 (512)
T ss_pred eEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHH
Confidence 9999999642 111 1222222211 13444555654443321 111 23456899999999999
Q ss_pred HHHHHHhCC
Q 048755 135 SLFKKMTGD 143 (674)
Q Consensus 135 ~lf~~~~~~ 143 (674)
++|..+...
T Consensus 372 ~Il~~~l~~ 380 (512)
T TIGR03689 372 DIFSKYLTD 380 (512)
T ss_pred HHHHHHhhc
Confidence 999988753
No 162
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.58 E-value=0.0011 Score=61.94 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=28.6
Q ss_pred cCCCcceEEEecCc--ccC-CCCcccccccCCcEEEcCCcCCCCc---ccccCcCCccEEecCCCCc
Q 048755 351 TGMTELRVLDFTEM--HLL-ALPSSLGLLQNLQTLSLDFCILGDI---AIIGDLKKLEILTLRGSDM 411 (674)
Q Consensus 351 ~~~~~Lr~L~l~~~--~~~-~lp~~~~~l~~L~~L~l~~~~~~~~---~~~~~l~~L~~L~l~~~~~ 411 (674)
..+++|+.|.++.| .+. .++...-.+++|+++++++|++..+ .....+.+|..|++..|..
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 44555555555555 222 3333333445555555555554432 2233444444555544433
No 163
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.58 E-value=0.027 Score=60.67 Aligned_cols=157 Identities=12% Similarity=0.076 Sum_probs=89.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||.|++++++.......-..+++++. .++..++...+... ....+.+++. +-=+|||||+
T Consensus 323 sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~--------~~~~f~~~y~--~~DLLlIDDI 386 (617)
T PRK14086 323 SGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG--------KGDSFRRRYR--EMDILLVDDI 386 (617)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc--------cHHHHHHHhh--cCCEEEEehh
Confidence 599999999999998765311123555544 44555554443221 1122333332 2458999999
Q ss_pred CCc---cchhh-ccCCcCC-CCCCeEEEEEeCChhh--------hhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755 82 WGS---LDLEA-IGIPVAD-DNGGCKVLLTARSQDV--------LSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG 148 (674)
Q Consensus 82 ~~~---~~~~~-l~~~~~~-~~~gs~ilvTtr~~~~--------~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 148 (674)
... +.|.. +..-+.. ...|..||+||+.... +.........++++..+.+.-..++.+.+.... ..
T Consensus 387 q~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~-l~ 465 (617)
T PRK14086 387 QFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ-LN 465 (617)
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcC-CC
Confidence 754 22221 2111111 1234568888875311 122334456889999999999999998875221 22
Q ss_pred chhHHHHHHHHHhCCchhhHHHHHHHH
Q 048755 149 ELKSVATEVVKECAGLPIAIVPVAKAL 175 (674)
Q Consensus 149 ~~~~~~~~i~~~c~g~Plal~~~~~~l 175 (674)
-..++..-|++.+.+..-.+..+-..|
T Consensus 466 l~~eVi~yLa~r~~rnvR~LegaL~rL 492 (617)
T PRK14086 466 APPEVLEFIASRISRNIRELEGALIRV 492 (617)
T ss_pred CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 235778888888877655544443333
No 164
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.54 E-value=0.034 Score=58.82 Aligned_cols=100 Identities=7% Similarity=0.046 Sum_probs=61.2
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCCh-hhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQ-DVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+|+++.. ...+.+...+.....+..+|++|.+. .+..........+++.+++.++..+.+.+.+.... .
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-~ 198 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-I 198 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC-C
Confidence 45678999998754 23444444443433455666665433 22221223456899999999999988887664211 1
Q ss_pred CchhHHHHHHHHHhCCchhhHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPV 171 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~ 171 (674)
.-..+.++.+++.++|.+..+...
T Consensus 199 ~i~~~al~~L~~~s~gdlr~a~~~ 222 (451)
T PRK06305 199 ETSREALLPIARAAQGSLRDAESL 222 (451)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 223467888999999977544333
No 165
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.54 E-value=0.016 Score=58.82 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=60.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHH-HcCCcEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQL-KKETKILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l-~~~kr~LlVlDd 80 (674)
.|+||||+|+.+++.... .+..++.+. .... ..+..+... .... ..+.+-++|+||
T Consensus 52 ~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~-~i~~~l~~~----------------~~~~~~~~~~~vliiDe 108 (316)
T PHA02544 52 PGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRID-FVRNRLTRF----------------ASTVSLTGGGKVIIIDE 108 (316)
T ss_pred CCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHH-HHHHHHHHH----------------HHhhcccCCCeEEEEEC
Confidence 699999999999987532 234455554 2222 222211110 0000 012456799999
Q ss_pred CCCc--c-chhhccCCcCCCCCCeEEEEEeCChhhhh-ccCCCcceEecCCCCHHHHHHHHH
Q 048755 81 IWGS--L-DLEAIGIPVADDNGGCKVLLTARSQDVLS-CKMDCQQNFVVDVLNEKEAWSLFK 138 (674)
Q Consensus 81 v~~~--~-~~~~l~~~~~~~~~gs~ilvTtr~~~~~~-~~~~~~~~~~l~~L~~~~~~~lf~ 138 (674)
++.. . ..+.+...+.....++++|+||....... ........+.++..+.++..+++.
T Consensus 109 ~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 109 FDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred cccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHH
Confidence 9755 1 22223222333345678888886543221 111223467777778887766654
No 166
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.53 E-value=0.045 Score=59.38 Aligned_cols=101 Identities=9% Similarity=0.040 Sum_probs=64.4
Q ss_pred CCcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCCh-hhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQ-DVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+|+++... .++.+...+........+|.+|.+. .+..........+++.+++.++..+.+.+.+.... .
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg-i 196 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ-I 196 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC-C
Confidence 456689999998653 4666655555444566666665443 22221223456789999999999888887763211 1
Q ss_pred CchhHHHHHHHHHhCCchhhHHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPVA 172 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~~ 172 (674)
....+.+..|++.++|.+..+..+.
T Consensus 197 ~id~eAl~lLa~~s~GdlR~alslL 221 (563)
T PRK06647 197 KYEDEALKWIAYKSTGSVRDAYTLF 221 (563)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2235677889999999876554443
No 167
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.49 E-value=0.063 Score=53.78 Aligned_cols=98 Identities=14% Similarity=0.195 Sum_probs=60.5
Q ss_pred CCcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCChhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755 71 ETKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG 148 (674)
Q Consensus 71 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 148 (674)
+++=++|+|+++... ..+++...+.......-|++|+....+........+.+.+.+++.++..+.+.+......
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~--- 199 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI--- 199 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc---
Confidence 567789999987653 344444344333333344444444444332334568999999999999999987653211
Q ss_pred chhHHHHHHHHHhCCchhhHHHHH
Q 048755 149 ELKSVATEVVKECAGLPIAIVPVA 172 (674)
Q Consensus 149 ~~~~~~~~i~~~c~g~Plal~~~~ 172 (674)
.......++..++|.|..+..+.
T Consensus 200 -~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 200 -LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred -chhHHHHHHHHcCCCHHHHHHHH
Confidence 11124688899999997665543
No 168
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.47 E-value=0.039 Score=58.14 Aligned_cols=145 Identities=12% Similarity=0.107 Sum_probs=81.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||+||+++++..... -..+++++ .+++...+...+... . .....+.. . ..-+|++||+
T Consensus 150 ~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~-----~---~~~f~~~~-~-~~dvLiIDDi 211 (445)
T PRK12422 150 EGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG-----E---MQRFRQFY-R-NVDALFIEDI 211 (445)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc-----h---HHHHHHHc-c-cCCEEEEcch
Confidence 6999999999999988643 23355544 344555555554321 1 11222222 2 3558899998
Q ss_pred CCccc--h--hhccCCcCC-CCCCeEEEEEeCCh-hhh-------hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755 82 WGSLD--L--EAIGIPVAD-DNGGCKVLLTARSQ-DVL-------SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG 148 (674)
Q Consensus 82 ~~~~~--~--~~l~~~~~~-~~~gs~ilvTtr~~-~~~-------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 148 (674)
..... + +.+...+.. ...|..||+||... ... .........+.+++++.++...++.+.+.... ..
T Consensus 212 q~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~-~~ 290 (445)
T PRK12422 212 EVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS-IR 290 (445)
T ss_pred hhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC-CC
Confidence 65421 1 111111110 11345688877542 111 11223346889999999999999988774221 22
Q ss_pred chhHHHHHHHHHhCCch
Q 048755 149 ELKSVATEVVKECAGLP 165 (674)
Q Consensus 149 ~~~~~~~~i~~~c~g~P 165 (674)
-..++..-|+..+.+.-
T Consensus 291 l~~evl~~la~~~~~di 307 (445)
T PRK12422 291 IEETALDFLIEALSSNV 307 (445)
T ss_pred CCHHHHHHHHHhcCCCH
Confidence 23466666777776543
No 169
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.46 E-value=0.16 Score=47.83 Aligned_cols=168 Identities=17% Similarity=0.149 Sum_probs=94.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEec-CCcCHHHHHHHHHHHhCCCCcccc--hHHHH-HHHHHHHHcCCc-EEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVS-QTPQIKEIQREIAEKLGLKIDEES--ETVRA-WRLLEQLKKETK-ILI 76 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~-~~~~~~l~~~kr-~Ll 76 (674)
-|+|||.++|++....... .++=|.+. ...+...+...|+..+.....-.- ....+ ..+..-..+++| ..+
T Consensus 60 vGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l 135 (269)
T COG3267 60 VGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPVVL 135 (269)
T ss_pred CCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 3899999999665544422 12223333 456788888888888877322211 11111 223333456777 999
Q ss_pred EEeCCCCc--cchhhccC--CcCCCC--CCeEEEEE---eCC----hhhhhccCCCcceEecCCCCHHHHHHHHHHHhC-
Q 048755 77 ILDDIWGS--LDLEAIGI--PVADDN--GGCKVLLT---ARS----QDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTG- 142 (674)
Q Consensus 77 VlDdv~~~--~~~~~l~~--~~~~~~--~gs~ilvT---tr~----~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~- 142 (674)
++||..+. +..+.++- .+.... .-+++++- =+. .....-..+....|++.|++.++...++..+..
T Consensus 136 ~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~ 215 (269)
T COG3267 136 MVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEG 215 (269)
T ss_pred eehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhc
Confidence 99998765 23333211 111111 11223321 111 111010112223399999999998888887774
Q ss_pred -CCCCCCchhHHHHHHHHHhCCchhhHHHHHH
Q 048755 143 -DCIENGELKSVATEVVKECAGLPIAIVPVAK 173 (674)
Q Consensus 143 -~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~ 173 (674)
....+--..+....|..+..|.|.++..++.
T Consensus 216 a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 216 AGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred cCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 2222333456788889999999999988764
No 170
>PRK08116 hypothetical protein; Validated
Probab=96.41 E-value=0.0092 Score=58.35 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=52.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||.||.++++....+ -..++++++ .+++..|........ ......+++.+.. -=||||||+
T Consensus 123 ~GtGKThLa~aia~~l~~~--~~~v~~~~~------~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~--~dlLviDDl 187 (268)
T PRK08116 123 VGTGKTYLAACIANELIEK--GVPVIFVNF------PQLLNRIKSTYKSSG-----KEDENEIIRSLVN--ADLLILDDL 187 (268)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEEH------HHHHHHHHHHHhccc-----cccHHHHHHHhcC--CCEEEEecc
Confidence 6999999999999998765 334666653 445555554432211 1112234444443 238999999
Q ss_pred CC--ccchhh--ccCCcCC-CCCCeEEEEEeCCh
Q 048755 82 WG--SLDLEA--IGIPVAD-DNGGCKVLLTARSQ 110 (674)
Q Consensus 82 ~~--~~~~~~--l~~~~~~-~~~gs~ilvTtr~~ 110 (674)
.. ..+|.. +..-+.. ...|..+|+||...
T Consensus 188 g~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 188 GAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 43 344432 2111111 12355688888643
No 171
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.00082 Score=60.10 Aligned_cols=91 Identities=15% Similarity=0.154 Sum_probs=62.0
Q ss_pred ceeEEeecCCCceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCC
Q 048755 530 RKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAF 609 (674)
Q Consensus 530 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 609 (674)
.+..++..++......-.-...++.++.|.+.+|..+.++....-.+-.|+|+.|+|++|+.|++-.-. ....|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~------~L~~l 175 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA------CLLKL 175 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH------HHHHh
Confidence 444555554433333222334578888899999998888865544457899999999999988864211 35568
Q ss_pred CccccccccCccccccc
Q 048755 610 PLLESLFLRDLRNLEEI 626 (674)
Q Consensus 610 ~~L~~L~l~~c~~L~~~ 626 (674)
++|+.|.|.+++.....
T Consensus 176 knLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 176 KNLRRLHLYDLPYVANL 192 (221)
T ss_pred hhhHHHHhcCchhhhch
Confidence 89999999888766544
No 172
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.35 E-value=0.072 Score=58.02 Aligned_cols=100 Identities=8% Similarity=0.041 Sum_probs=61.1
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCC-hhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARS-QDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~-~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+|+++.. ..++.+...+........+|++|.. ..+..........+++.+++.++..+.+...+.... .
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~eg-i 196 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEG-I 196 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcC-C
Confidence 45678899999865 3455554444333344555544433 333221223456789999999999988887764211 1
Q ss_pred CchhHHHHHHHHHhCCchhhHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPV 171 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~ 171 (674)
....+.+..|++.++|.+..+..+
T Consensus 197 ~i~~~al~~ia~~s~G~~R~al~~ 220 (559)
T PRK05563 197 EYEDEALRLIARAAEGGMRDALSI 220 (559)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 122466788889999887654433
No 173
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.16 Score=50.66 Aligned_cols=109 Identities=19% Similarity=0.221 Sum_probs=69.0
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCChh-hhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQD-VLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~-~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++=++|+|+++.. ...+++..-+.....++.+|.+|.+.. +........+.+.+.+++.+++.+.+.....+
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~~---- 182 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGIT---- 182 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCCc----
Confidence 44568889999865 345666555555556677777766654 33323345678999999999999988653111
Q ss_pred CchhHHHHHHHHHhCCchhhHHHHHHHHhcCChHHHHHHHHHhc
Q 048755 148 GELKSVATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLK 191 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~~~~~w~~~l~~l~ 191 (674)
....++..++|.|+.+..+ +.....+.++.++..+.
T Consensus 183 -----~~~~~l~l~~G~p~~A~~~---~~~~~~~~~~~~~~~l~ 218 (319)
T PRK06090 183 -----VPAYALKLNMGSPLKTLAM---MKEGGLEKYHKLERQLV 218 (319)
T ss_pred -----hHHHHHHHcCCCHHHHHHH---hCCCcHHHHHHHHHHHH
Confidence 2356788999999866543 33334444444444443
No 174
>CHL00176 ftsH cell division protein; Validated
Probab=96.27 E-value=0.072 Score=58.62 Aligned_cols=140 Identities=17% Similarity=0.235 Sum_probs=76.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+++++..... ++.++. .++... ..+. .......+.+....+.+++|++||+
T Consensus 225 pGTGKT~LAralA~e~~~p-------~i~is~----s~f~~~---~~g~------~~~~vr~lF~~A~~~~P~ILfIDEI 284 (638)
T CHL00176 225 PGTGKTLLAKAIAGEAEVP-------FFSISG----SEFVEM---FVGV------GAARVRDLFKKAKENSPCIVFIDEI 284 (638)
T ss_pred CCCCHHHHHHHHHHHhCCC-------eeeccH----HHHHHH---hhhh------hHHHHHHHHHHHhcCCCcEEEEecc
Confidence 7999999999999875432 233321 111110 0010 1122344455555667899999999
Q ss_pred CCc------------cc----hhhccCCcCC--CCCCeEEEEEeCChhhhhc-c---CCCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGS------------LD----LEAIGIPVAD--DNGGCKVLLTARSQDVLSC-K---MDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~------------~~----~~~l~~~~~~--~~~gs~ilvTtr~~~~~~~-~---~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+.. .. +..+...+.. ...+-.||.||...+.... . -+....+.++..+.++-.+++..
T Consensus 285 D~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~ 364 (638)
T CHL00176 285 DAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKV 364 (638)
T ss_pred hhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHH
Confidence 532 01 2222222221 2234556666655443211 1 12346788888999999999988
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCC
Q 048755 140 MTGDCIENGELKSVATEVVKECAG 163 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g 163 (674)
++.... .........+++.+.|
T Consensus 365 ~l~~~~--~~~d~~l~~lA~~t~G 386 (638)
T CHL00176 365 HARNKK--LSPDVSLELIARRTPG 386 (638)
T ss_pred HHhhcc--cchhHHHHHHHhcCCC
Confidence 875321 1122345677777777
No 175
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.27 E-value=0.07 Score=53.29 Aligned_cols=93 Identities=15% Similarity=0.103 Sum_probs=60.5
Q ss_pred CCcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++=++|+|+++... .-+++..-+..-..++.+|++|.+.... .......+.+.+.+.+.+++...+... +
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~----- 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G----- 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-C-----
Confidence 456789999998653 3444444444444567677777654443 222344578899999999999888653 2
Q ss_pred CchhHHHHHHHHHhCCchhhHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVP 170 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~ 170 (674)
...+.+..++..++|.|+.+..
T Consensus 186 -~~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 186 -VSERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred -CChHHHHHHHHHcCCCHHHHHH
Confidence 1123366789999999986543
No 176
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.27 E-value=0.01 Score=56.05 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=23.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEe
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRV 31 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~ 31 (674)
.|+||||++..+....... |+.+++++-
T Consensus 22 sGSGKT~li~~lL~~~~~~--f~~I~l~t~ 49 (241)
T PF04665_consen 22 SGSGKTTLIKSLLYYLRHK--FDHIFLITP 49 (241)
T ss_pred CCCCHHHHHHHHHHhhccc--CCEEEEEec
Confidence 6999999999999887755 888877644
No 177
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.044 Score=59.96 Aligned_cols=97 Identities=9% Similarity=0.040 Sum_probs=59.3
Q ss_pred CCcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeC-ChhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTAR-SQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr-~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+|+|+... ..+.+...+......+++|++|. ...+..........+++.+++.++....+...+.... .
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg-i 196 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG-I 196 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC-C
Confidence 345578999997653 35555444444444555555544 3434322233457889999999999888776654211 1
Q ss_pred CchhHHHHHHHHHhCCchhhH
Q 048755 148 GELKSVATEVVKECAGLPIAI 168 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal 168 (674)
.-..+....+++.++|....+
T Consensus 197 ~i~~~al~~la~~a~G~lr~a 217 (576)
T PRK14965 197 SISDAALALVARKGDGSMRDS 217 (576)
T ss_pred CCCHHHHHHHHHHcCCCHHHH
Confidence 223467788899999876433
No 178
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.19 E-value=0.067 Score=55.46 Aligned_cols=142 Identities=17% Similarity=0.251 Sum_probs=76.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+++++..... | +.+.. .++... .++ .. ......+........+.+|++|++
T Consensus 188 pGTGKT~LAkalA~~l~~~--f---i~i~~------s~l~~k---~~g-----e~-~~~lr~lf~~A~~~~P~ILfIDEI 247 (398)
T PTZ00454 188 PGTGKTMLAKAVAHHTTAT--F---IRVVG------SEFVQK---YLG-----EG-PRMVRDVFRLARENAPSIIFIDEV 247 (398)
T ss_pred CCCCHHHHHHHHHHhcCCC--E---EEEeh------HHHHHH---hcc-----hh-HHHHHHHHHHHHhcCCeEEEEECH
Confidence 6999999999999976543 3 22211 111111 111 11 122334444455567899999997
Q ss_pred CCc------------cc----hhhccCCcCC--CCCCeEEEEEeCChhhhhc-cC---CCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGS------------LD----LEAIGIPVAD--DNGGCKVLLTARSQDVLSC-KM---DCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~------------~~----~~~l~~~~~~--~~~gs~ilvTtr~~~~~~~-~~---~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+.. .. +..+...+.. ...+..||+||...+.... .. .....+.++..+.++..++|..
T Consensus 248 D~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~ 327 (398)
T PTZ00454 248 DSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQT 327 (398)
T ss_pred hhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHH
Confidence 632 00 1112222211 2235678888876554421 11 2345688888899998888887
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCch
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLP 165 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~P 165 (674)
+.......+.. -..++++...|..
T Consensus 328 ~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 328 ITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred HHhcCCCCccc--CHHHHHHHcCCCC
Confidence 66422111111 1456666666653
No 179
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.12 E-value=0.0042 Score=58.12 Aligned_cols=58 Identities=28% Similarity=0.446 Sum_probs=24.7
Q ss_pred cccCCcEEEcCCc--CCCC--cccccCcCCccEEecCCCCchhc--hHhhcCCCCCcEEeCCCC
Q 048755 375 LLQNLQTLSLDFC--ILGD--IAIIGDLKKLEILTLRGSDMEKL--VEEMGELTQLRLLDLSYC 432 (674)
Q Consensus 375 ~l~~L~~L~l~~~--~~~~--~~~~~~l~~L~~L~l~~~~~~~l--p~~~~~l~~L~~L~l~~~ 432 (674)
.|++|++|.++.| .+.. ......+++|++|++++|+++.+ .+.+..+.+|..|++..|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 3445555555555 2211 12223335555555555544321 112334444444444444
No 180
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.1 Score=51.46 Aligned_cols=151 Identities=20% Similarity=0.250 Sum_probs=85.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|.|||-||++|+++.... | +-|.. .++.+.. +|.. .-.+.++.+-...+.+.+|++|.+
T Consensus 194 PGTGKTLLAkAVA~~T~At--F-----Irvvg----SElVqKY---iGEG------aRlVRelF~lArekaPsIIFiDEI 253 (406)
T COG1222 194 PGTGKTLLAKAVANQTDAT--F-----IRVVG----SELVQKY---IGEG------ARLVRELFELAREKAPSIIFIDEI 253 (406)
T ss_pred CCCcHHHHHHHHHhccCce--E-----EEecc----HHHHHHH---hccc------hHHHHHHHHHHhhcCCeEEEEech
Confidence 7999999999999998866 5 22322 1222221 1111 123445555556678999999987
Q ss_pred CCc-------------c-c--hhhccCCcCCC--CCCeEEEEEeCChhhhh----ccCCCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGS-------------L-D--LEAIGIPVADD--NGGCKVLLTARSQDVLS----CKMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~-------------~-~--~~~l~~~~~~~--~~gs~ilvTtr~~~~~~----~~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+-. + | +-++...+..+ ..+-|||..|--.+++. +.-+..+.++++.=+.+.-.++|.-
T Consensus 254 DAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~I 333 (406)
T COG1222 254 DAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKI 333 (406)
T ss_pred hhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHH
Confidence 521 0 0 22233344333 33568888887666651 1112456778876566666678877
Q ss_pred HhCC--CCCCCchhHHHHHHHHHhCCchh----hHHHHHHHHh
Q 048755 140 MTGD--CIENGELKSVATEVVKECAGLPI----AIVPVAKALK 176 (674)
Q Consensus 140 ~~~~--~~~~~~~~~~~~~i~~~c~g~Pl----al~~~~~~l~ 176 (674)
++.. ...... .+.+++.+.|.-- |+-.=|+++.
T Consensus 334 HtrkM~l~~dvd----~e~la~~~~g~sGAdlkaictEAGm~A 372 (406)
T COG1222 334 HTRKMNLADDVD----LELLARLTEGFSGADLKAICTEAGMFA 372 (406)
T ss_pred HhhhccCccCcC----HHHHHHhcCCCchHHHHHHHHHHhHHH
Confidence 6641 111122 4567777777653 3444444443
No 181
>PRK08118 topology modulation protein; Reviewed
Probab=96.01 E-value=0.0035 Score=56.55 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=23.1
Q ss_pred CCCCcHHHHHHHHHHhhhhc-ccCceEEE
Q 048755 1 MGGIGKTTLVKEVGRQAKEN-NLFEKVIS 28 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~-~~F~~~~w 28 (674)
.+|+||||+|+.+++..... -+||..+|
T Consensus 9 ~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 9 SGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred CCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 47999999999999987754 45777776
No 182
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.01 E-value=0.11 Score=52.03 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=61.8
Q ss_pred CCcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++=++|+|+++... ..+++...+.....++.+|++|.+.... .......+.+.+.+++.+++.+.+......
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~---- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSA---- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhcc----
Confidence 556678899998653 4555655555556677777777766443 222344578999999999999888766431
Q ss_pred CchhHHHHHHHHHhCCchhhH
Q 048755 148 GELKSVATEVVKECAGLPIAI 168 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal 168 (674)
+ ...+...+..++|.|..+
T Consensus 182 ~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 182 E--ISEILTALRINYGRPLLA 200 (325)
T ss_pred C--hHHHHHHHHHcCCCHHHH
Confidence 1 123556778899999633
No 183
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.01 E-value=0.029 Score=49.44 Aligned_cols=108 Identities=21% Similarity=0.177 Sum_probs=58.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC---cCHHHHHHHHHHHh-----CCCC---cccchH--HHH----HHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT---PQIKEIQREIAEKL-----GLKI---DEESET--VRA----WRL 64 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~~~l-----~~~~---~~~~~~--~~~----~~~ 64 (674)
.|.||||.|..++-+..... ..+.++.+-+. .....+++.+ ..+ +... ....+. ..+ ...
T Consensus 11 ~G~Gkt~~a~g~~~ra~~~g--~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a~~~~~~a 87 (159)
T cd00561 11 NGKGKTTAALGLALRALGHG--YRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAAAEGWAFA 87 (159)
T ss_pred CCCCHHHHHHHHHHHHHHCC--CeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHHHHHHHHH
Confidence 48999999999998888662 25666666443 2333333333 000 0000 011111 111 122
Q ss_pred HHHHHcCCcEEEEEeCCCCc-----cchhhccCCcCCCCCCeEEEEEeCChhh
Q 048755 65 LEQLKKETKILIILDDIWGS-----LDLEAIGIPVADDNGGCKVLLTARSQDV 112 (674)
Q Consensus 65 ~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~ilvTtr~~~~ 112 (674)
.+.+..++-=|+|||++-.. -+.+.+...+.....+.-+|+|.|+...
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~ 140 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPK 140 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 23333444559999998543 2334444444555667789999998654
No 184
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.98 E-value=0.044 Score=62.76 Aligned_cols=146 Identities=13% Similarity=0.142 Sum_probs=74.4
Q ss_pred CCCcHHHHHHHHHHhhhhccc----CceEE-EEEecCCcCHHHHHHHHHHHhCCCCccc-chHHHHHHHHHHHH-cCCcE
Q 048755 2 GGIGKTTLVKEVGRQAKENNL----FEKVI-SSRVSQTPQIKEIQREIAEKLGLKIDEE-SETVRAWRLLEQLK-KETKI 74 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~----F~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~l~-~~kr~ 74 (674)
+|+||||+|+.++.+...... .+..+ .++++.-. ...... .-...+..+++.+. .+++.
T Consensus 217 pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~--------------ag~~~~ge~e~~lk~ii~e~~~~~~~~ 282 (852)
T TIGR03345 217 AGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ--------------AGASVKGEFENRLKSVIDEVKASPQPI 282 (852)
T ss_pred CCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh--------------cccccchHHHHHHHHHHHHHHhcCCCe
Confidence 699999999999998754321 12233 33333200 000011 11123334444443 24689
Q ss_pred EEEEeCCCCcc---------chhhccCCcCCCCCC-eEEEEEeCChhhh------hccCCCcceEecCCCCHHHHHHHHH
Q 048755 75 LIILDDIWGSL---------DLEAIGIPVADDNGG-CKVLLTARSQDVL------SCKMDCQQNFVVDVLNEKEAWSLFK 138 (674)
Q Consensus 75 LlVlDdv~~~~---------~~~~l~~~~~~~~~g-s~ilvTtr~~~~~------~~~~~~~~~~~l~~L~~~~~~~lf~ 138 (674)
+|++|++.... +...+..+. -..| -++|-||...+.. ....+.-+.+.+++++.++..+++.
T Consensus 283 ILfIDEih~l~~~g~~~~~~d~~n~Lkp~--l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~ 360 (852)
T TIGR03345 283 ILFIDEAHTLIGAGGQAGQGDAANLLKPA--LARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLR 360 (852)
T ss_pred EEEEeChHHhccCCCccccccHHHHhhHH--hhCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHH
Confidence 99999986431 111122222 2233 3444455432211 1112234689999999999999975
Q ss_pred HHhC---CCCCCCchhHHHHHHHHHhCC
Q 048755 139 KMTG---DCIENGELKSVATEVVKECAG 163 (674)
Q Consensus 139 ~~~~---~~~~~~~~~~~~~~i~~~c~g 163 (674)
.... ....-.-..++...+++.+.+
T Consensus 361 ~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 361 GLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred HHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 4442 111112234566666766654
No 185
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.96 E-value=0.023 Score=59.34 Aligned_cols=142 Identities=17% Similarity=0.230 Sum_probs=75.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+++++..... | +.+..+. +... .++ . .......+.+....+.+.+|+||++
T Consensus 226 PGTGKT~LAraIA~el~~~--f---i~V~~se------L~~k---~~G-----e-~~~~vr~lF~~A~~~~P~ILfIDEI 285 (438)
T PTZ00361 226 PGTGKTLLAKAVANETSAT--F---LRVVGSE------LIQK---YLG-----D-GPKLVRELFRVAEENAPSIVFIDEI 285 (438)
T ss_pred CCCCHHHHHHHHHHhhCCC--E---EEEecch------hhhh---hcc-----h-HHHHHHHHHHHHHhCCCcEEeHHHH
Confidence 6999999999999977643 4 2222111 1111 010 0 1112333444444457889999987
Q ss_pred CCcc------------c----hhhccCCcCC--CCCCeEEEEEeCChhhhhcc-C---CCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGSL------------D----LEAIGIPVAD--DNGGCKVLLTARSQDVLSCK-M---DCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~~------------~----~~~l~~~~~~--~~~gs~ilvTtr~~~~~~~~-~---~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+... . +..+...+.. ...+.+||+||...+..... . .....++++..+.++..++|..
T Consensus 286 D~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~ 365 (438)
T PTZ00361 286 DAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEI 365 (438)
T ss_pred HHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHH
Confidence 5220 0 1111111111 12356788888765554211 1 2345788999999999999997
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCch
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLP 165 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~P 165 (674)
++........ --..+++..+.|.-
T Consensus 366 ~~~k~~l~~d--vdl~~la~~t~g~s 389 (438)
T PTZ00361 366 HTSKMTLAED--VDLEEFIMAKDELS 389 (438)
T ss_pred HHhcCCCCcC--cCHHHHHHhcCCCC
Confidence 7742211111 11345666665543
No 186
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.95 E-value=0.045 Score=52.57 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=90.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCce-EEEEEecCCcCHHHHHHHH--HHHhCCCC-cccchHHHHHHHHHHHHcCCc-EEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEK-VISSRVSQTPQIKEIQREI--AEKLGLKI-DEESETVRAWRLLEQLKKETK-ILI 76 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i--~~~l~~~~-~~~~~~~~~~~~~~~l~~~kr-~Ll 76 (674)
.|.|||+-|++++...-..+.|.+ +.=.++|.....--.-..+ ++++.... .... ..-++ =.+
T Consensus 66 pGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~------------~~~~~fKii 133 (346)
T KOG0989|consen 66 PGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDG------------YPCPPFKII 133 (346)
T ss_pred CCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccC------------CCCCcceEE
Confidence 699999999999998887777844 5555666543222000000 01110000 0000 00133 378
Q ss_pred EEeCCCCc--cchhhccCCcCCCCCCeEEE-EEeCChhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCCchhHH
Q 048755 77 ILDDIWGS--LDLEAIGIPVADDNGGCKVL-LTARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSV 153 (674)
Q Consensus 77 VlDdv~~~--~~~~~l~~~~~~~~~gs~il-vTtr~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~ 153 (674)
|||+++.. +.|.++..-.......++.| ||+--..+-.........|+.++|.+++...-++..+-... ..-..++
T Consensus 134 IlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~-v~~d~~a 212 (346)
T KOG0989|consen 134 ILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEG-VDIDDDA 212 (346)
T ss_pred EEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhC-CCCCHHH
Confidence 89999876 46888866665656666644 44443333222223456789999999999988888774211 1223467
Q ss_pred HHHHHHHhCCchhh
Q 048755 154 ATEVVKECAGLPIA 167 (674)
Q Consensus 154 ~~~i~~~c~g~Pla 167 (674)
.+.|++.++|--.-
T Consensus 213 l~~I~~~S~GdLR~ 226 (346)
T KOG0989|consen 213 LKLIAKISDGDLRR 226 (346)
T ss_pred HHHHHHHcCCcHHH
Confidence 88999999986443
No 187
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.90 E-value=0.052 Score=57.66 Aligned_cols=144 Identities=18% Similarity=0.158 Sum_probs=75.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||.+|+++++..... | +-++.+. +. ....+.. .....++.+......+++|++|++
T Consensus 268 pGTGKTllAkaiA~e~~~~--~---~~l~~~~----------l~----~~~vGes-e~~l~~~f~~A~~~~P~IL~IDEI 327 (489)
T CHL00195 268 QGTGKSLTAKAIANDWQLP--L---LRLDVGK----------LF----GGIVGES-ESRMRQMIRIAEALSPCILWIDEI 327 (489)
T ss_pred CCCcHHHHHHHHHHHhCCC--E---EEEEhHH----------hc----ccccChH-HHHHHHHHHHHHhcCCcEEEehhh
Confidence 7999999999999986543 2 2222221 11 0111111 123334444444457999999998
Q ss_pred CCc----c---c-------hhhccCCcCCCCCCeEEEEEeCChhhhh----ccCCCcceEecCCCCHHHHHHHHHHHhCC
Q 048755 82 WGS----L---D-------LEAIGIPVADDNGGCKVLLTARSQDVLS----CKMDCQQNFVVDVLNEKEAWSLFKKMTGD 143 (674)
Q Consensus 82 ~~~----~---~-------~~~l~~~~~~~~~gs~ilvTtr~~~~~~----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 143 (674)
+.. . + ...+...+.....+-.||.||...+... +.-+....+.++.-+.++-.++|..+...
T Consensus 328 D~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 328 DKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred hhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 632 0 0 0111111112223344556666554321 11134457888888999999999887753
Q ss_pred CCCCCchhHHHHHHHHHhCCch
Q 048755 144 CIENGELKSVATEVVKECAGLP 165 (674)
Q Consensus 144 ~~~~~~~~~~~~~i~~~c~g~P 165 (674)
.........-...+++.+.|.-
T Consensus 408 ~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 408 FRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred cCCCcccccCHHHHHhhcCCCC
Confidence 2211111112456666666653
No 188
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.0021 Score=57.59 Aligned_cols=71 Identities=11% Similarity=0.069 Sum_probs=42.7
Q ss_pred CCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCccccCCccEEEEecCCCcccc
Q 048755 576 EVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNV 653 (674)
Q Consensus 576 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 653 (674)
..++.++.|.+.+|..+.++.-+. -.+.+|+|+.|+|++|+.+++- +-.++.++++|+.|.|.+-+.+...
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~-----l~~~~~~L~~L~lsgC~rIT~~--GL~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLER-----LGGLAPSLQDLDLSGCPRITDG--GLACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred hccchhhhheeccccchhhHHHHH-----hcccccchheeeccCCCeechh--HHHHHHHhhhhHHHHhcCchhhhch
Confidence 456777777777776666553222 1225677777777777776644 2334566677777777665555443
No 189
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.80 E-value=0.32 Score=45.95 Aligned_cols=85 Identities=18% Similarity=0.250 Sum_probs=46.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH-cCCcEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLK-KETKILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~kr~LlVlDd 80 (674)
.|+|||++++++.+.+..+. =.+ |.|.+. +...+..+.+.+. ...||+|++||
T Consensus 61 rGtGKSSlVkall~~y~~~G--LRl--Iev~k~----------------------~L~~l~~l~~~l~~~~~kFIlf~DD 114 (249)
T PF05673_consen 61 RGTGKSSLVKALLNEYADQG--LRL--IEVSKE----------------------DLGDLPELLDLLRDRPYKFILFCDD 114 (249)
T ss_pred CCCCHHHHHHHHHHHHhhcC--ceE--EEECHH----------------------HhccHHHHHHHHhcCCCCEEEEecC
Confidence 69999999999999988763 112 223211 1111223333333 34799999999
Q ss_pred CCCc---cchhhccCCcCC---CCCCeEEEEEeCChhh
Q 048755 81 IWGS---LDLEAIGIPVAD---DNGGCKVLLTARSQDV 112 (674)
Q Consensus 81 v~~~---~~~~~l~~~~~~---~~~gs~ilvTtr~~~~ 112 (674)
..=. .....++..+.. ..+...+|..|.|+.-
T Consensus 115 LsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 115 LSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred CCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 8632 234444333321 2233445555555443
No 190
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.76 E-value=0.12 Score=55.83 Aligned_cols=148 Identities=22% Similarity=0.264 Sum_probs=77.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+++++..... | +.++. .++.... .+. .......+.+......+.+|++||+
T Consensus 97 pGtGKT~la~alA~~~~~~--~-----~~i~~----~~~~~~~---~g~------~~~~l~~~f~~a~~~~p~Il~iDEi 156 (495)
T TIGR01241 97 PGTGKTLLAKAVAGEAGVP--F-----FSISG----SDFVEMF---VGV------GASRVRDLFEQAKKNAPCIIFIDEI 156 (495)
T ss_pred CCCCHHHHHHHHHHHcCCC--e-----eeccH----HHHHHHH---hcc------cHHHHHHHHHHHHhcCCCEEEEech
Confidence 7999999999999875433 2 22221 1111110 111 1122334444444456799999998
Q ss_pred CCcc------------ch----hhccCCcCC--CCCCeEEEEEeCChhhh----hccCCCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGSL------------DL----EAIGIPVAD--DNGGCKVLLTARSQDVL----SCKMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~~------------~~----~~l~~~~~~--~~~gs~ilvTtr~~~~~----~~~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+... .+ ..+...+.. ...+-.||.||...+.. .+..+....+.++..+.++-.+++..
T Consensus 157 d~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~ 236 (495)
T TIGR01241 157 DAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKV 236 (495)
T ss_pred hhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHH
Confidence 5420 01 111111111 12344555566554322 11113446788998999999999988
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCc-hhhHHHH
Q 048755 140 MTGDCIENGELKSVATEVVKECAGL-PIAIVPV 171 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~-Plal~~~ 171 (674)
++....... ..-...+++.+.|. +-.+..+
T Consensus 237 ~l~~~~~~~--~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 237 HAKNKKLAP--DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred HHhcCCCCc--chhHHHHHHhCCCCCHHHHHHH
Confidence 775322111 12245788888774 3444443
No 191
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.74 E-value=0.026 Score=52.05 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=26.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-----cCHHHHHHHHHHHh
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-----PQIKEIQREIAEKL 48 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-----~~~~~~~~~i~~~l 48 (674)
+|+|||+|+++++.+......+ ++.+.+... .+...+++++++++
T Consensus 33 ~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (185)
T PF13191_consen 33 SGSGKTSLLRALLDRLAERGGY--VISINCDDSERNPYSPFRSALRQLIDQL 82 (185)
T ss_dssp TTSSHHHHHHHHHHHHHHHT----EEEEEEETTTS-HHHHHHHHHHHHS---
T ss_pred CCCCHHHHHHHHHHHHHhcCCE--EEEEEEeccccchhhHHHHHHHHHHHHh
Confidence 7999999999999998877322 333344333 12355555555553
No 192
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.68 E-value=0.11 Score=50.83 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQ 41 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 41 (674)
+|+|||++|++++..... ..+.+++....+..+++
T Consensus 30 ~GtGKT~lA~~la~~lg~-----~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 30 AGTGKTTLAMHVARKRDR-----PVMLINGDAELTTSDLV 64 (262)
T ss_pred CCCCHHHHHHHHHHHhCC-----CEEEEeCCccCCHHHHh
Confidence 799999999999974421 24566666555544443
No 193
>PTZ00202 tuzin; Provisional
Probab=95.60 E-value=0.059 Score=55.00 Aligned_cols=131 Identities=15% Similarity=0.178 Sum_probs=74.1
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHH----Hc-CCcEE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQL----KK-ETKIL 75 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l----~~-~kr~L 75 (674)
.+|+|||||++.+..... + ..+.++.. +..++++.|+.++|.+.... ..+....+.+.+ .. |++.+
T Consensus 294 ~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~LL~ALGV~p~~~-k~dLLrqIqeaLl~~~~e~GrtPV 364 (550)
T PTZ00202 294 FRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRSVVKALGVPNVEA-CGDLLDFISEACRRAKKMNGETPL 364 (550)
T ss_pred CCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHHHHhCCCCEE
Confidence 479999999999996554 2 13333333 77999999999999743322 233333333333 23 77888
Q ss_pred EEEeCCC--Cc-cchhhccCCcCCCCCCeEEEEEeCChhhh--hccCCCcceEecCCCCHHHHHHHHHHHh
Q 048755 76 IILDDIW--GS-LDLEAIGIPVADDNGGCKVLLTARSQDVL--SCKMDCQQNFVVDVLNEKEAWSLFKKMT 141 (674)
Q Consensus 76 lVlDdv~--~~-~~~~~l~~~~~~~~~gs~ilvTtr~~~~~--~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 141 (674)
||+-=-. +. ..+.+. ..+.....=|.|++----+..- ....+.-..|-++.++.++|..+.....
T Consensus 365 LII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 365 LVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred EEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 8884211 11 112211 1222333344555533322221 1122344578899999999988766543
No 194
>PRK07261 topology modulation protein; Provisional
Probab=95.56 E-value=0.039 Score=50.03 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=20.4
Q ss_pred CCCCcHHHHHHHHHHhhhhc-ccCceEEE
Q 048755 1 MGGIGKTTLVKEVGRQAKEN-NLFEKVIS 28 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~-~~F~~~~w 28 (674)
++|+||||||+++....... -+.|...|
T Consensus 8 ~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 8 YSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999998775432 23455666
No 195
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.46 E-value=0.09 Score=50.88 Aligned_cols=81 Identities=19% Similarity=0.297 Sum_probs=49.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccC-ceEEEEEecCC-cCHHHHHHHHHHHhCCC-------CcccchH------HHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLF-EKVISSRVSQT-PQIKEIQREIAEKLGLK-------IDEESET------VRAWRLLE 66 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F-~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~~~~ 66 (674)
+|+||||||..++++.+.+ | +.++++-+.+. ..+.++.+++.+.=... ..+++.. .....+.+
T Consensus 78 ~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AE 155 (274)
T cd01133 78 AGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMAE 155 (274)
T ss_pred CCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 5999999999999998865 5 34566666544 35666666665432111 1111111 11223445
Q ss_pred HHH-c-CCcEEEEEeCCCCc
Q 048755 67 QLK-K-ETKILIILDDIWGS 84 (674)
Q Consensus 67 ~l~-~-~kr~LlVlDdv~~~ 84 (674)
++. + |+.+|+++||+...
T Consensus 156 yfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 156 YFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHhcCCeEEEEEeChhHH
Confidence 553 3 79999999998643
No 196
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.42 E-value=0.079 Score=55.98 Aligned_cols=115 Identities=10% Similarity=0.113 Sum_probs=71.5
Q ss_pred HHHHHHHHHH----cCCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCC-hhhhhccCCCcceEecCCCCHHH
Q 048755 60 RAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARS-QDVLSCKMDCQQNFVVDVLNEKE 132 (674)
Q Consensus 60 ~~~~~~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~-~~~~~~~~~~~~~~~l~~L~~~~ 132 (674)
...++.+... .+|-=..|+|+|.-. ..|+++..-+..-...-+.|..|++ ..+-.......+.|+++.++.++
T Consensus 103 diR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~ 182 (515)
T COG2812 103 DIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEE 182 (515)
T ss_pred HHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHH
Confidence 3444555543 344558899999854 5688776666554455555555544 44433344567899999999999
Q ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHHHhCCchhhHHHHHHHH
Q 048755 133 AWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKAL 175 (674)
Q Consensus 133 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l 175 (674)
....+...+... ......+....|++..+|...-...+-.++
T Consensus 183 I~~~L~~i~~~E-~I~~e~~aL~~ia~~a~Gs~RDalslLDq~ 224 (515)
T COG2812 183 IAKHLAAILDKE-GINIEEDALSLIARAAEGSLRDALSLLDQA 224 (515)
T ss_pred HHHHHHHHHHhc-CCccCHHHHHHHHHHcCCChhhHHHHHHHH
Confidence 999888877521 122334567777777777665444443333
No 197
>PRK08181 transposase; Validated
Probab=95.39 E-value=0.027 Score=54.85 Aligned_cols=65 Identities=25% Similarity=0.253 Sum_probs=39.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||.||.++++....+ ...++++++ .++...+..... .. ......+.+. +.=|||+||+
T Consensus 115 ~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~----~~----~~~~~l~~l~--~~dLLIIDDl 176 (269)
T PRK08181 115 PGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARR----EL----QLESAIAKLD--KFDLLILDDL 176 (269)
T ss_pred CCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHh----CC----cHHHHHHHHh--cCCEEEEecc
Confidence 6999999999999987654 334555543 455555543321 11 1223344443 3559999999
Q ss_pred CCc
Q 048755 82 WGS 84 (674)
Q Consensus 82 ~~~ 84 (674)
...
T Consensus 177 g~~ 179 (269)
T PRK08181 177 AYV 179 (269)
T ss_pred ccc
Confidence 643
No 198
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.33 E-value=0.065 Score=50.53 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=29.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQR 42 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 42 (674)
+|+|||++|.+++.+.... -..++|++... ++...+.+
T Consensus 21 ~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 21 PGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH
Confidence 7999999999999887644 46799999875 66555444
No 199
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.28 E-value=0.25 Score=50.17 Aligned_cols=70 Identities=10% Similarity=0.093 Sum_probs=46.9
Q ss_pred CCcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHHH
Q 048755 71 ETKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKKM 140 (674)
Q Consensus 71 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~ 140 (674)
+++=++|+|+++... ..+++...+.....++.+|.+|.++.-. .........+++.+++.++..+.+...
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 345578999987653 3555555555555677777777665432 222345678999999999998887653
No 200
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.07 E-value=0.0099 Score=32.83 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=14.6
Q ss_pred cceEEEecCcccCCCCccccc
Q 048755 355 ELRVLDFTEMHLLALPSSLGL 375 (674)
Q Consensus 355 ~Lr~L~l~~~~~~~lp~~~~~ 375 (674)
+|++|++++|.++.+|+.++.
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766543
No 201
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.06 E-value=0.14 Score=49.73 Aligned_cols=48 Identities=29% Similarity=0.366 Sum_probs=33.6
Q ss_pred CCCcHHHHHHHHHHhhhhc---ccC-ceEEEEEecCCcCHHHHHHHHHHHhCC
Q 048755 2 GGIGKTTLVKEVGRQAKEN---NLF-EKVISSRVSQTPQIKEIQREIAEKLGL 50 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~---~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~ 50 (674)
+|+|||.||.+++-..... ... ..++||+-...|+.+.+. +|++..+.
T Consensus 47 ~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~ 98 (256)
T PF08423_consen 47 SGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGL 98 (256)
T ss_dssp TTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS
T ss_pred cccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcccc
Confidence 6999999999887554322 112 459999999989887765 57776544
No 202
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.97 E-value=0.12 Score=46.22 Aligned_cols=111 Identities=20% Similarity=0.165 Sum_probs=62.2
Q ss_pred CCCcHHHHHHHHHHhhhhccc------------------CceEEEEEecCC---cCHHHHHHHHHHHhCCCCcccchHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNL------------------FEKVISSRVSQT---PQIKEIQREIAEKLGLKIDEESETVR 60 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~------------------F~~~~wv~~~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~ 60 (674)
.|+||+++|..++...--... ...+.|+.-... ..++++. ++.+.+.....
T Consensus 28 ~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir-~i~~~~~~~~~------- 99 (162)
T PF13177_consen 28 SGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIR-EIIEFLSLSPS------- 99 (162)
T ss_dssp TTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHH-HHHHHCTSS-T-------
T ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHH-HHHHHHHHHHh-------
Confidence 599999999999886543221 223455544332 3333332 44444433211
Q ss_pred HHHHHHHHHcCCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCC
Q 048755 61 AWRLLEQLKKETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLN 129 (674)
Q Consensus 61 ~~~~~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~ 129 (674)
.+++=++|+||++.. +..+++...+.....++++|++|++.... .........+.+.+++
T Consensus 100 ---------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 100 ---------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp ---------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred ---------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 235668899999875 45666665665666789999999887643 2222344566666553
No 203
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.96 E-value=0.018 Score=52.38 Aligned_cols=65 Identities=26% Similarity=0.341 Sum_probs=38.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||.||.++++....+. + .+.++++ .+++..+- ...... ......+.+. +-=||||||+
T Consensus 56 ~G~GKThLa~ai~~~~~~~g-~-~v~f~~~------~~L~~~l~----~~~~~~----~~~~~~~~l~--~~dlLilDDl 117 (178)
T PF01695_consen 56 PGTGKTHLAVAIANEAIRKG-Y-SVLFITA------SDLLDELK----QSRSDG----SYEELLKRLK--RVDLLILDDL 117 (178)
T ss_dssp TTSSHHHHHHHHHHHHHHTT----EEEEEH------HHHHHHHH----CCHCCT----THCHHHHHHH--TSSCEEEETC
T ss_pred HhHHHHHHHHHHHHHhccCC-c-ceeEeec------Cceecccc----cccccc----chhhhcCccc--cccEeccccc
Confidence 69999999999999877642 2 3566554 34444443 221111 1223455555 3558889999
Q ss_pred CCc
Q 048755 82 WGS 84 (674)
Q Consensus 82 ~~~ 84 (674)
...
T Consensus 118 G~~ 120 (178)
T PF01695_consen 118 GYE 120 (178)
T ss_dssp TSS
T ss_pred cee
Confidence 654
No 204
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.96 E-value=0.11 Score=50.02 Aligned_cols=80 Identities=23% Similarity=0.186 Sum_probs=45.7
Q ss_pred CCCcHHHHHHHHHHhhhhccc----CceEEEEEecCCcCHHHHHHHHHHHhCCCCcc---------cch----HHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNL----FEKVISSRVSQTPQIKEIQREIAEKLGLKIDE---------ESE----TVRAWRL 64 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~----~~~~~~~ 64 (674)
+|+|||++|.+++........ -..++|++....++.+.+. ++++..+..... ... ......+
T Consensus 28 ~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~l~~l 106 (235)
T cd01123 28 FGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNSDHQLQLLEEL 106 (235)
T ss_pred CCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCHHHHHHHHHHH
Confidence 699999999999865432211 2579999988877755443 344443322110 011 1122333
Q ss_pred HHHHHcC-CcEEEEEeCCC
Q 048755 65 LEQLKKE-TKILIILDDIW 82 (674)
Q Consensus 65 ~~~l~~~-kr~LlVlDdv~ 82 (674)
.+.+... +.-++|+|.+.
T Consensus 107 ~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 107 EAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHhhcCCeeEEEEeCcH
Confidence 3344444 67788888874
No 205
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.94 E-value=0.55 Score=47.51 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=60.3
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++=++|+|+++.. ...+++...+.....++.+|.+|.+.+.. .......+.+.+.+++.++..+.+... +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~---- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV---- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC----
Confidence 45568889999865 45666665665666677666666665443 222344578999999999999988764 21
Q ss_pred CchhHHHHHHHHHhCCchhhHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPV 171 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~ 171 (674)
+. ...++..++|.|..+..+
T Consensus 206 ~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 233577889999754433
No 206
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.92 E-value=0.16 Score=57.75 Aligned_cols=125 Identities=15% Similarity=0.210 Sum_probs=64.8
Q ss_pred CCCcHHHHHHHHHHhhhhccc---C-ceEEE-EEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNL---F-EKVIS-SRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILI 76 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~---F-~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~Ll 76 (674)
+|+|||++|+.++.+...... + +..+| ++.+ .+... .... ..-......+++.+...++.+|
T Consensus 212 pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~----------~l~a~--~~~~-g~~e~~l~~i~~~~~~~~~~IL 278 (731)
T TIGR02639 212 PGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG----------SLLAG--TKYR-GDFEERLKAVVSEIEKEPNAIL 278 (731)
T ss_pred CCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH----------HHhhh--cccc-chHHHHHHHHHHHHhccCCeEE
Confidence 699999999999998754311 1 23333 2321 11100 0000 1112344555555554568999
Q ss_pred EEeCCCCcc----------chhhccCCcCCCCCCe-EEEEEeCChhhh------hccCCCcceEecCCCCHHHHHHHHHH
Q 048755 77 ILDDIWGSL----------DLEAIGIPVADDNGGC-KVLLTARSQDVL------SCKMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 77 VlDdv~~~~----------~~~~l~~~~~~~~~gs-~ilvTtr~~~~~------~~~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
++|+++... +...+..+. -..|. ++|-+|...+.. ....+.-+.+.++.++.++..+++..
T Consensus 279 fiDEih~l~~~g~~~~~~~~~~~~L~~~--l~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~ 356 (731)
T TIGR02639 279 FIDEIHTIVGAGATSGGSMDASNLLKPA--LSSGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKG 356 (731)
T ss_pred EEecHHHHhccCCCCCccHHHHHHHHHH--HhCCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHH
Confidence 999986321 111222121 12333 344444432110 01112235789999999999999986
Q ss_pred Hh
Q 048755 140 MT 141 (674)
Q Consensus 140 ~~ 141 (674)
..
T Consensus 357 ~~ 358 (731)
T TIGR02639 357 LK 358 (731)
T ss_pred HH
Confidence 54
No 207
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.89 E-value=0.21 Score=57.51 Aligned_cols=125 Identities=14% Similarity=0.247 Sum_probs=64.7
Q ss_pred CCCcHHHHHHHHHHhhhhccc---C-ceEEE-EEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNL---F-EKVIS-SRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILI 76 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~---F-~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~Ll 76 (674)
+|+|||++|+.++.+....+- . +..+| ++.+ .++ . +....+ .-......+++.+...++.+|
T Consensus 209 pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~------~l~----a--g~~~~g-e~e~rl~~i~~~~~~~~~~IL 275 (821)
T CHL00095 209 PGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG------LLL----A--GTKYRG-EFEERLKRIFDEIQENNNIIL 275 (821)
T ss_pred CCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH------HHh----c--cCCCcc-HHHHHHHHHHHHHHhcCCeEE
Confidence 799999999999998763211 1 23444 2221 111 0 111111 122345556666655678999
Q ss_pred EEeCCCCcc---------chhhccCCcCCCCCCeEEEEEeCChhhh------hccCCCcceEecCCCCHHHHHHHHHHH
Q 048755 77 ILDDIWGSL---------DLEAIGIPVADDNGGCKVLLTARSQDVL------SCKMDCQQNFVVDVLNEKEAWSLFKKM 140 (674)
Q Consensus 77 VlDdv~~~~---------~~~~l~~~~~~~~~gs~ilvTtr~~~~~------~~~~~~~~~~~l~~L~~~~~~~lf~~~ 140 (674)
++|++.... +...+..+....+. -++|.+|...+.. .........+.++..+.++...++...
T Consensus 276 fiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~-l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 276 VIDEVHTLIGAGAAEGAIDAANILKPALARGE-LQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred EEecHHHHhcCCCCCCcccHHHHhHHHHhCCC-cEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 999985221 11222222112222 2344444433321 111223356788888999888887643
No 208
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.88 E-value=0.012 Score=32.52 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=13.5
Q ss_pred CccEEecCCCCchhchHhhcC
Q 048755 400 KLEILTLRGSDMEKLVEEMGE 420 (674)
Q Consensus 400 ~L~~L~l~~~~~~~lp~~~~~ 420 (674)
+|++|++++|+++.+|..+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777777777765443
No 209
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.74 E-value=0.1 Score=44.67 Aligned_cols=98 Identities=14% Similarity=0.339 Sum_probs=40.1
Q ss_pred CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEEcCCcCCCC--cccccCcCCccEE
Q 048755 328 ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDFCILGD--IAIIGDLKKLEIL 404 (674)
Q Consensus 328 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L 404 (674)
.|.+|+.+.+.. ....+....|.++.+|+.+.+..+ +..++ ..+..+.+|+.+.+.. .+.. ...+..+.+|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 445666666553 344555666666666666666553 44443 2344555566666644 2221 1233445566666
Q ss_pred ecCCCCchhchH-hhcCCCCCcEEeCC
Q 048755 405 TLRGSDMEKLVE-EMGELTQLRLLDLS 430 (674)
Q Consensus 405 ~l~~~~~~~lp~-~~~~l~~L~~L~l~ 430 (674)
.+..+ +..++. .+.+. +|+.+.+.
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 55443 433432 23333 55555544
No 210
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.71 E-value=0.093 Score=57.42 Aligned_cols=47 Identities=11% Similarity=0.076 Sum_probs=29.8
Q ss_pred cceEecCCCCHHHHHHHHHHHhCCC--C--CC--CchhHHHHHHHHHhCCchh
Q 048755 120 QQNFVVDVLNEKEAWSLFKKMTGDC--I--EN--GELKSVATEVVKECAGLPI 166 (674)
Q Consensus 120 ~~~~~l~~L~~~~~~~lf~~~~~~~--~--~~--~~~~~~~~~i~~~c~g~Pl 166 (674)
...+.+.++...+..+.+.+.+... . .. ....+..+.|+..++|--.
T Consensus 266 v~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiR 318 (637)
T TIGR00602 266 VSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIR 318 (637)
T ss_pred eeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHH
Confidence 3468999999999777777666311 0 11 1123567778888877643
No 211
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.67 E-value=0.3 Score=56.46 Aligned_cols=76 Identities=16% Similarity=0.248 Sum_probs=39.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||++|+.++...... -...+-++++....... +...++......+- .....+...+......+|+||++
T Consensus 604 ~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~----~~~l~g~~~g~~g~-~~~g~l~~~v~~~p~~vlllDei 676 (852)
T TIGR03346 604 TGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS----VARLIGAPPGYVGY-EEGGQLTEAVRRKPYSVVLFDEV 676 (852)
T ss_pred CCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch----HHHhcCCCCCccCc-ccccHHHHHHHcCCCcEEEEecc
Confidence 6999999999999876533 22345556654322111 12222322211110 00122333344334459999999
Q ss_pred CCc
Q 048755 82 WGS 84 (674)
Q Consensus 82 ~~~ 84 (674)
...
T Consensus 677 eka 679 (852)
T TIGR03346 677 EKA 679 (852)
T ss_pred ccC
Confidence 865
No 212
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.65 E-value=0.11 Score=46.40 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=31.6
Q ss_pred HHHHHHcCCcEEEEEeC----CCCccchhhccCCcCCCCCCeEEEEEeCChhhhhc
Q 048755 64 LLEQLKKETKILIILDD----IWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSC 115 (674)
Q Consensus 64 ~~~~l~~~kr~LlVlDd----v~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~~ 115 (674)
+.+.+. +++-+|+=|+ ++....|+-+...-.-+..|+-|+++|.+..+...
T Consensus 148 IARAiV-~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 148 IARAIV-NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNR 202 (223)
T ss_pred HHHHHc-cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHh
Confidence 444444 4788888885 44443454432111224568999999999988653
No 213
>PRK06526 transposase; Provisional
Probab=94.64 E-value=0.032 Score=53.98 Aligned_cols=65 Identities=23% Similarity=0.232 Sum_probs=36.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||+||.++.+...... + .+.|+ +..++.+.+..... . . .....+..+. +.-+||+||+
T Consensus 107 ~GtGKThLa~al~~~a~~~g-~-~v~f~------t~~~l~~~l~~~~~----~-~---~~~~~l~~l~--~~dlLIIDD~ 168 (254)
T PRK06526 107 PGTGKTHLAIGLGIRACQAG-H-RVLFA------TAAQWVARLAAAHH----A-G---RLQAELVKLG--RYPLLIVDEV 168 (254)
T ss_pred CCCchHHHHHHHHHHHHHCC-C-chhhh------hHHHHHHHHHHHHh----c-C---cHHHHHHHhc--cCCEEEEccc
Confidence 79999999999998876542 2 23442 33445555443211 0 0 1112233332 3568999999
Q ss_pred CCc
Q 048755 82 WGS 84 (674)
Q Consensus 82 ~~~ 84 (674)
...
T Consensus 169 g~~ 171 (254)
T PRK06526 169 GYI 171 (254)
T ss_pred ccC
Confidence 743
No 214
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.58 E-value=0.6 Score=47.29 Aligned_cols=92 Identities=13% Similarity=0.031 Sum_probs=61.4
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++=++|+|+++.. ..-+++...+.....++.+|.+|.+.... .......+.+.+.+++.+++...+.+..+
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~----- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT----- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccC-----
Confidence 56778999999865 34555555555555677777777765443 22234456789999999999988765432
Q ss_pred CchhHHHHHHHHHhCCchhhH
Q 048755 148 GELKSVATEVVKECAGLPIAI 168 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal 168 (674)
...+.+..++..++|.|..+
T Consensus 182 -~~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 182 -MSQDALLAALRLSAGAPGAA 201 (334)
T ss_pred -CCHHHHHHHHHHcCCCHHHH
Confidence 11234678889999999644
No 215
>PRK10536 hypothetical protein; Provisional
Probab=94.47 E-value=0.1 Score=49.77 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=25.4
Q ss_pred EEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCChhh
Q 048755 74 ILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQDV 112 (674)
Q Consensus 74 ~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~~ 112 (674)
-++|+|++++.. +...+... .+.+|++|+|--..++
T Consensus 178 ~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~v~~GD~~Qi 215 (262)
T PRK10536 178 AVVILDEAQNVTAAQMKMFLTR---LGENVTVIVNGDITQC 215 (262)
T ss_pred CEEEEechhcCCHHHHHHHHhh---cCCCCEEEEeCChhhc
Confidence 499999998763 44444443 3569999998876554
No 216
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.43 E-value=0.22 Score=56.52 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=40.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||++|+.++.... ...+.++.++..... .+...++......+. +....+.+.+.....-+++||++
T Consensus 493 ~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~----~~~~lig~~~gyvg~-~~~~~l~~~~~~~p~~VvllDEi 562 (731)
T TIGR02639 493 TGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH----TVSRLIGAPPGYVGF-EQGGLLTEAVRKHPHCVLLLDEI 562 (731)
T ss_pred CCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----cHHHHhcCCCCCccc-chhhHHHHHHHhCCCeEEEEech
Confidence 69999999999998763 235666665432211 122223322221111 11123344444445569999999
Q ss_pred CCc
Q 048755 82 WGS 84 (674)
Q Consensus 82 ~~~ 84 (674)
+..
T Consensus 563 eka 565 (731)
T TIGR02639 563 EKA 565 (731)
T ss_pred hhc
Confidence 865
No 217
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.41 E-value=0.35 Score=55.09 Aligned_cols=142 Identities=20% Similarity=0.238 Sum_probs=76.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||++|+++++..... | +.+..+ ++ +.. ..++. ......+.+......+.+|++|++
T Consensus 496 pGtGKT~lakalA~e~~~~--f---i~v~~~------~l----~~~----~vGes-e~~i~~~f~~A~~~~p~iifiDEi 555 (733)
T TIGR01243 496 PGTGKTLLAKAVATESGAN--F---IAVRGP------EI----LSK----WVGES-EKAIREIFRKARQAAPAIIFFDEI 555 (733)
T ss_pred CCCCHHHHHHHHHHhcCCC--E---EEEehH------HH----hhc----ccCcH-HHHHHHHHHHHHhcCCEEEEEECh
Confidence 6999999999999986633 3 222221 11 111 01111 123444555555557899999998
Q ss_pred CCcc--------------chhhccCCcCC--CCCCeEEEEEeCChhhhh-cc---CCCcceEecCCCCHHHHHHHHHHHh
Q 048755 82 WGSL--------------DLEAIGIPVAD--DNGGCKVLLTARSQDVLS-CK---MDCQQNFVVDVLNEKEAWSLFKKMT 141 (674)
Q Consensus 82 ~~~~--------------~~~~l~~~~~~--~~~gs~ilvTtr~~~~~~-~~---~~~~~~~~l~~L~~~~~~~lf~~~~ 141 (674)
+... ....+...+.. ...+-.||.||...+... .. .+....+.++..+.++-.++|..+.
T Consensus 556 d~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 556 DAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHT 635 (733)
T ss_pred hhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHh
Confidence 5320 01112222221 123445555665554431 11 1345678899999999999998766
Q ss_pred CCCCCCCchhHHHHHHHHHhCCch
Q 048755 142 GDCIENGELKSVATEVVKECAGLP 165 (674)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~c~g~P 165 (674)
......+.. -...+++.+.|.-
T Consensus 636 ~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 636 RSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred cCCCCCccC--CHHHHHHHcCCCC
Confidence 422111111 1456777777654
No 218
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.41 E-value=0.076 Score=52.97 Aligned_cols=89 Identities=15% Similarity=0.168 Sum_probs=51.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||.||.++++....+ .+ .+.++++. +++..+....... .....++.+. +-=||||||+
T Consensus 165 ~G~GKThLa~Aia~~l~~~-g~-~v~~~~~~------~l~~~lk~~~~~~--------~~~~~l~~l~--~~dlLiIDDi 226 (306)
T PRK08939 165 FGVGKSYLLAAIANELAKK-GV-SSTLLHFP------EFIRELKNSISDG--------SVKEKIDAVK--EAPVLMLDDI 226 (306)
T ss_pred CCCCHHHHHHHHHHHHHHc-CC-CEEEEEHH------HHHHHHHHHHhcC--------cHHHHHHHhc--CCCEEEEecC
Confidence 5999999999999998854 22 35565553 4555555443211 1233444443 4679999999
Q ss_pred CCc--cchhh--ccCCc-CCC-CCCeEEEEEeC
Q 048755 82 WGS--LDLEA--IGIPV-ADD-NGGCKVLLTAR 108 (674)
Q Consensus 82 ~~~--~~~~~--l~~~~-~~~-~~gs~ilvTtr 108 (674)
.-. .+|.. +...+ ... ..+-.+|+||-
T Consensus 227 G~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 227 GAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred CCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 643 45643 33322 222 23445677775
No 219
>PRK04296 thymidine kinase; Provisional
Probab=94.41 E-value=0.044 Score=50.65 Aligned_cols=104 Identities=16% Similarity=0.156 Sum_probs=56.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcc--cchHHHHHHHHHHHHcCCcEEEEEe
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDE--ESETVRAWRLLEQLKKETKILIILD 79 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~kr~LlVlD 79 (674)
.|.||||+|..++.+...+ -..++.+ ...++.+.....++++++..... ............. ..++.-+||+|
T Consensus 11 ~GsGKTT~~l~~~~~~~~~--g~~v~i~--k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~dvviID 85 (190)
T PRK04296 11 MNSGKSTELLQRAYNYEER--GMKVLVF--KPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKIDCVLID 85 (190)
T ss_pred CCCHHHHHHHHHHHHHHHc--CCeEEEE--eccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCCCEEEEE
Confidence 3999999999999988765 2234433 12223333345566666643322 1111112222222 33345589999
Q ss_pred CCCCc--cchhhccCCcCCCCCCeEEEEEeCChhh
Q 048755 80 DIWGS--LDLEAIGIPVADDNGGCKVLLTARSQDV 112 (674)
Q Consensus 80 dv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~ 112 (674)
.+.-. ++..++...+ ...|..|++|.++.+.
T Consensus 86 Eaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 86 EAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred ccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 99643 2233332221 2447789999998654
No 220
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=1.2 Score=45.60 Aligned_cols=146 Identities=14% Similarity=0.191 Sum_probs=77.2
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.+|.|||++..++||... ||. +=...+...+-.+ ++.++.. ...|-+||+.|
T Consensus 243 PPGTGKSS~IaAmAn~L~----ydI-ydLeLt~v~~n~d-Lr~LL~~----------------------t~~kSIivIED 294 (457)
T KOG0743|consen 243 PPGTGKSSFIAAMANYLN----YDI-YDLELTEVKLDSD-LRHLLLA----------------------TPNKSILLIED 294 (457)
T ss_pred CCCCCHHHHHHHHHhhcC----Cce-EEeeeccccCcHH-HHHHHHh----------------------CCCCcEEEEee
Confidence 479999999999999877 542 2233333222222 3333222 23466677777
Q ss_pred CCCc--------c---chh---------hcc---CCcCCCCCCeEEE-EEeCChhhhh-ccC---CCcceEecCCCCHHH
Q 048755 81 IWGS--------L---DLE---------AIG---IPVADDNGGCKVL-LTARSQDVLS-CKM---DCQQNFVVDVLNEKE 132 (674)
Q Consensus 81 v~~~--------~---~~~---------~l~---~~~~~~~~gs~il-vTtr~~~~~~-~~~---~~~~~~~l~~L~~~~ 132 (674)
++-. . ..+ -+. .-+...+.+-||| .||-..+.+. ... +....+.|+.-+.+.
T Consensus 295 IDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~ 374 (457)
T KOG0743|consen 295 IDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEA 374 (457)
T ss_pred cccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHH
Confidence 6422 0 001 011 1111222233554 4666555441 111 234577899999999
Q ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHHHhCCchhhHHHHH-HHHhcC
Q 048755 133 AWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVA-KALKNK 178 (674)
Q Consensus 133 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~-~~l~~~ 178 (674)
...|+....+...+ +.++.+|.+...+.-.+=..++ .++.++
T Consensus 375 fK~La~nYL~~~~~----h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 375 FKTLASNYLGIEED----HRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred HHHHHHHhcCCCCC----cchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 99999998874322 3455566665555544333344 444444
No 221
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.32 E-value=0.094 Score=56.41 Aligned_cols=66 Identities=21% Similarity=0.357 Sum_probs=49.5
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.+|+||||||.-++.+.- | .|+=|++|+..+...+-..|...+.....-. .++++.-||+|.
T Consensus 334 ppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------adsrP~CLViDE 395 (877)
T KOG1969|consen 334 PPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------ADSRPVCLVIDE 395 (877)
T ss_pred CCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccccc-------------cCCCcceEEEec
Confidence 379999999999988654 3 4888999999988888888777664432111 125788999999
Q ss_pred CCCc
Q 048755 81 IWGS 84 (674)
Q Consensus 81 v~~~ 84 (674)
++..
T Consensus 396 IDGa 399 (877)
T KOG1969|consen 396 IDGA 399 (877)
T ss_pred ccCC
Confidence 9865
No 222
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.47 Score=50.75 Aligned_cols=115 Identities=16% Similarity=0.203 Sum_probs=60.6
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc-------CHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCc
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-------QIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETK 73 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr 73 (674)
.+|.|||++|+++++..... | +.++.+. .-+..++ ++.++..+--+
T Consensus 476 PPGC~KT~lAkalAne~~~n--F-----lsvkgpEL~sk~vGeSEr~ir--------------------~iF~kAR~~aP 528 (693)
T KOG0730|consen 476 PPGCGKTLLAKALANEAGMN--F-----LSVKGPELFSKYVGESERAIR--------------------EVFRKARQVAP 528 (693)
T ss_pred CCCcchHHHHHHHhhhhcCC--e-----eeccCHHHHHHhcCchHHHHH--------------------HHHHHHhhcCC
Confidence 37999999999999987765 4 3332210 1222333 33333333456
Q ss_pred EEEEEeCCCCcc-------------chhhccCCcCCCCC-CeEEEEEeCChhhh--hccCC---CcceEecCCCCHHHHH
Q 048755 74 ILIILDDIWGSL-------------DLEAIGIPVADDNG-GCKVLLTARSQDVL--SCKMD---CQQNFVVDVLNEKEAW 134 (674)
Q Consensus 74 ~LlVlDdv~~~~-------------~~~~l~~~~~~~~~-gs~ilvTtr~~~~~--~~~~~---~~~~~~l~~L~~~~~~ 134 (674)
+++.||.++... .+..+...+..... +..+|+...|+.-. ...++ ..+.+.++.=+.+.-.
T Consensus 529 ~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~ 608 (693)
T KOG0730|consen 529 CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARL 608 (693)
T ss_pred eEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHH
Confidence 888888764320 12222222222222 23444433333221 21223 3456677766777777
Q ss_pred HHHHHHhC
Q 048755 135 SLFKKMTG 142 (674)
Q Consensus 135 ~lf~~~~~ 142 (674)
++|+.++.
T Consensus 609 ~Ilk~~~k 616 (693)
T KOG0730|consen 609 EILKQCAK 616 (693)
T ss_pred HHHHHHHh
Confidence 89998885
No 223
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.30 E-value=0.11 Score=47.41 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=22.1
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSR 30 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~ 30 (674)
+.|+||||+|+.+++..... +..+++++
T Consensus 15 ~~GsGKst~a~~l~~~l~~~--~~~~~~~~ 42 (176)
T PRK05541 15 LAGSGKTTIAKALYERLKLK--YSNVIYLD 42 (176)
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCcEEEEe
Confidence 47999999999999998755 55666553
No 224
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.30 E-value=0.27 Score=56.46 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=39.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||.+|++++...... ....+-++++..... ..+.+-++......+.. ....+.+.+.+...-+|+||++
T Consensus 605 ~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~----~~~~~l~g~~~gyvg~~-~~g~L~~~v~~~p~svvllDEi 677 (852)
T TIGR03345 605 SGVGKTETALALAELLYGG--EQNLITINMSEFQEA----HTVSRLKGSPPGYVGYG-EGGVLTEAVRRKPYSVVLLDEV 677 (852)
T ss_pred CCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhh----hhhccccCCCCCccccc-ccchHHHHHHhCCCcEEEEech
Confidence 6999999999998876533 223344444432211 12222233322211110 1112334455556779999999
Q ss_pred CCc
Q 048755 82 WGS 84 (674)
Q Consensus 82 ~~~ 84 (674)
...
T Consensus 678 eka 680 (852)
T TIGR03345 678 EKA 680 (852)
T ss_pred hhc
Confidence 765
No 225
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.28 E-value=0.38 Score=55.45 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=38.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||++|+.+++..... -...+.++++.-.. .. .+.+-++.+....+.. ....+...+.....-+|+|||+
T Consensus 607 ~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~-~~---~~~~LiG~~pgy~g~~-~~g~l~~~v~~~p~~vLllDEi 679 (857)
T PRK10865 607 TGVGKTELCKALANFMFDS--DDAMVRIDMSEFME-KH---SVSRLVGAPPGYVGYE-EGGYLTEAVRRRPYSVILLDEV 679 (857)
T ss_pred CCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhh-hh---hHHHHhCCCCcccccc-hhHHHHHHHHhCCCCeEEEeeh
Confidence 6999999999999866432 12345555543211 11 1222233322211111 1112233333333469999999
Q ss_pred CCc
Q 048755 82 WGS 84 (674)
Q Consensus 82 ~~~ 84 (674)
...
T Consensus 680 eka 682 (857)
T PRK10865 680 EKA 682 (857)
T ss_pred hhC
Confidence 854
No 226
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.26 E-value=0.92 Score=44.99 Aligned_cols=139 Identities=14% Similarity=0.049 Sum_probs=77.2
Q ss_pred CCCcHHHHHHHHHHhh--------hhcccCceEEEEEe-cCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCC
Q 048755 2 GGIGKTTLVKEVGRQA--------KENNLFEKVISSRV-SQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKET 72 (674)
Q Consensus 2 gGiGKTtla~~~~~~~--------~~~~~F~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~k 72 (674)
-|.||+++|..+++.. ....+-+.+.+++. .....++++. ++.+.+....- ..++
T Consensus 27 eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~~---------------~~~~ 90 (299)
T PRK07132 27 YNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSSF---------------VQSQ 90 (299)
T ss_pred CCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCCc---------------ccCC
Confidence 4889999998888775 22222223444432 1222333222 33333322210 1146
Q ss_pred cEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCChh-hhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCCc
Q 048755 73 KILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQD-VLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGE 149 (674)
Q Consensus 73 r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~-~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~ 149 (674)
+=++|+|+++... ..+++...+.....++.+|++|.+.. +........+.+++.++++++....+... + .
T Consensus 91 ~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~-~--~---- 163 (299)
T PRK07132 91 KKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK-N--K---- 163 (299)
T ss_pred ceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc-C--C----
Confidence 7788888887653 34555555555556777776665543 32222345688999999999998877654 2 1
Q ss_pred hhHHHHHHHHHhCC
Q 048755 150 LKSVATEVVKECAG 163 (674)
Q Consensus 150 ~~~~~~~i~~~c~g 163 (674)
..+.+..++...+|
T Consensus 164 ~~~~a~~~a~~~~~ 177 (299)
T PRK07132 164 EKEYNWFYAYIFSN 177 (299)
T ss_pred ChhHHHHHHHHcCC
Confidence 12335555555565
No 227
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.24 E-value=0.95 Score=43.41 Aligned_cols=72 Identities=11% Similarity=0.049 Sum_probs=48.7
Q ss_pred EEEeCChhhhh-ccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHhCCchhhHHHHHHHHh
Q 048755 104 LLTARSQDVLS-CKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKALK 176 (674)
Q Consensus 104 lvTtr~~~~~~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~ 176 (674)
=.|||--.+.. ...+...+.+++..+.+|..++..+.+.. ....-..+.+.+|+++..|-|.-...+-+.++
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~-l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI-LGIEIDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH-hCCCCChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 34777533321 11234567899999999999999988841 11233457799999999999976665555544
No 228
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.21 E-value=0.19 Score=50.24 Aligned_cols=80 Identities=25% Similarity=0.170 Sum_probs=47.7
Q ss_pred CCCcHHHHHHHHHHhhhhc----ccCceEEEEEecCCcCHHHHHHHHHHHhCCCCccc---------chH----HHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKEN----NLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEE---------SET----VRAWRL 64 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---------~~~----~~~~~~ 64 (674)
+|+|||++|.+++-..... ..=..++||+.-..|+++.+.+ +++.++.+.... ... +....+
T Consensus 105 ~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~e~~~~~l~~l 183 (313)
T TIGR02238 105 FRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTSEHQMELLDYL 183 (313)
T ss_pred CCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCHHHHHHHHHHH
Confidence 6999999999887543311 1113699999988888877654 567766542210 011 122223
Q ss_pred HHHHHcCCcEEEEEeCCC
Q 048755 65 LEQLKKETKILIILDDIW 82 (674)
Q Consensus 65 ~~~l~~~kr~LlVlDdv~ 82 (674)
...+...+--|+|+|.+.
T Consensus 184 ~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 184 AAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHhhccCCCEEEEEcch
Confidence 333334445578999874
No 229
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.21 Score=50.37 Aligned_cols=77 Identities=23% Similarity=0.352 Sum_probs=52.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcc--cchHHHHHHHHHHHHcCCcEEEEEe
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDE--ESETVRAWRLLEQLKKETKILIILD 79 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~kr~LlVlD 79 (674)
+|||||||.-+++.+...+. .+.+|+- ..+..+ .+--++.++..... .-.....+.+++.+.+.++-++|+|
T Consensus 102 PGIGKSTLLLQva~~lA~~~---~vLYVsG--EES~~Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVID 175 (456)
T COG1066 102 PGIGKSTLLLQVAARLAKRG---KVLYVSG--EESLQQ-IKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVID 175 (456)
T ss_pred CCCCHHHHHHHHHHHHHhcC---cEEEEeC--CcCHHH-HHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEEe
Confidence 69999999999999998773 5666544 333332 23346667654432 2334456677777777889999999
Q ss_pred CCCCc
Q 048755 80 DIWGS 84 (674)
Q Consensus 80 dv~~~ 84 (674)
.++..
T Consensus 176 SIQT~ 180 (456)
T COG1066 176 SIQTL 180 (456)
T ss_pred cccee
Confidence 98643
No 230
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.16 E-value=0.22 Score=50.33 Aligned_cols=49 Identities=24% Similarity=0.149 Sum_probs=34.9
Q ss_pred CCCcHHHHHHHHHHhhhh---cc-cCceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 048755 2 GGIGKTTLVKEVGRQAKE---NN-LFEKVISSRVSQTPQIKEIQREIAEKLGLK 51 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~---~~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 51 (674)
.|+|||+|+.+++-.... .. .-..++||+....|+++.+.+ +++.++.+
T Consensus 135 ~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 135 FRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 699999999998754331 11 124699999999898887655 56666654
No 231
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.16 E-value=0.23 Score=47.43 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=30.5
Q ss_pred CCCcHHHHHHHHHHhhhhcc----cCceEEEEEecCCcCHHHHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENN----LFEKVISSRVSQTPQIKEIQREIAEK 47 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~ 47 (674)
+|+|||++|.+++....... .=..++|++....++...+. ++++.
T Consensus 28 ~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~ 76 (226)
T cd01393 28 FGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVR 76 (226)
T ss_pred CCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHH
Confidence 69999999999987754331 01468999987777655443 33333
No 232
>PRK09183 transposase/IS protein; Provisional
Probab=94.06 E-value=0.12 Score=50.35 Aligned_cols=65 Identities=23% Similarity=0.241 Sum_probs=35.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||+||..+++...... ..+.+++ ..++...+...... . ......+... .+.-++|+||+
T Consensus 111 ~GtGKThLa~al~~~a~~~G--~~v~~~~------~~~l~~~l~~a~~~-----~---~~~~~~~~~~-~~~dlLiiDdl 173 (259)
T PRK09183 111 SGVGKTHLAIALGYEAVRAG--IKVRFTT------AADLLLQLSTAQRQ-----G---RYKTTLQRGV-MAPRLLIIDEI 173 (259)
T ss_pred CCCCHHHHHHHHHHHHHHcC--CeEEEEe------HHHHHHHHHHHHHC-----C---cHHHHHHHHh-cCCCEEEEccc
Confidence 69999999999988765431 2344443 23344333222111 0 0112222222 24569999999
Q ss_pred CC
Q 048755 82 WG 83 (674)
Q Consensus 82 ~~ 83 (674)
..
T Consensus 174 g~ 175 (259)
T PRK09183 174 GY 175 (259)
T ss_pred cc
Confidence 64
No 233
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.06 E-value=0.4 Score=49.21 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=78.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|.|||-|++++.+.......=..++. + +.+++...++..+.. ....+..+.. .-=++++||+
T Consensus 122 ~GlGKTHLl~Aign~~~~~~~~a~v~y--~----~se~f~~~~v~a~~~--------~~~~~Fk~~y---~~dlllIDDi 184 (408)
T COG0593 122 VGLGKTHLLQAIGNEALANGPNARVVY--L----TSEDFTNDFVKALRD--------NEMEKFKEKY---SLDLLLIDDI 184 (408)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCceEEe--c----cHHHHHHHHHHHHHh--------hhHHHHHHhh---ccCeeeechH
Confidence 499999999999998886622123443 3 234444444444322 1122333333 1338899999
Q ss_pred CCcc---chhh-c---cCCcCCCCCCeEEEEEeCChhhh--------hccCCCcceEecCCCCHHHHHHHHHHHhCCCCC
Q 048755 82 WGSL---DLEA-I---GIPVADDNGGCKVLLTARSQDVL--------SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIE 146 (674)
Q Consensus 82 ~~~~---~~~~-l---~~~~~~~~~gs~ilvTtr~~~~~--------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 146 (674)
+-.. .|+. + ...+. ..|..|++|++...-. ..+......+++.+.+.+....++.+.+....
T Consensus 185 q~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~- 261 (408)
T COG0593 185 QFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRG- 261 (408)
T ss_pred hHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcC-
Confidence 7431 2221 1 22222 2233788888643221 12234457899999999999999988764111
Q ss_pred CCchhHHHHHHHHHhCCc
Q 048755 147 NGELKSVATEVVKECAGL 164 (674)
Q Consensus 147 ~~~~~~~~~~i~~~c~g~ 164 (674)
..-..++..-+++.....
T Consensus 262 ~~i~~ev~~~la~~~~~n 279 (408)
T COG0593 262 IEIPDEVLEFLAKRLDRN 279 (408)
T ss_pred CCCCHHHHHHHHHHhhcc
Confidence 111234455555554443
No 234
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.98 E-value=0.3 Score=45.25 Aligned_cols=79 Identities=25% Similarity=0.259 Sum_probs=52.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC-CcCHHHHHHHHHHHhCCCCc----ccchHHHHHHHHHHHHcCCcEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKID----EESETVRAWRLLEQLKKETKILI 76 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~~l~~~kr~Ll 76 (674)
.|+||||.+.+++.+...+ -..+.-|+... .....+-+++.++.++.+.. ..++...+.+..++...++.=++
T Consensus 10 tGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D~v 87 (196)
T PF00448_consen 10 TGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGYDLV 87 (196)
T ss_dssp TTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEE
T ss_pred CCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCCCEE
Confidence 6999999999999998866 34577777653 34677888899999987632 22344445455555544334478
Q ss_pred EEeCCC
Q 048755 77 ILDDIW 82 (674)
Q Consensus 77 VlDdv~ 82 (674)
++|-..
T Consensus 88 lIDT~G 93 (196)
T PF00448_consen 88 LIDTAG 93 (196)
T ss_dssp EEEE-S
T ss_pred EEecCC
Confidence 888653
No 235
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.96 E-value=0.4 Score=45.07 Aligned_cols=142 Identities=16% Similarity=0.240 Sum_probs=81.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|.|||-+|+++++..++- | +.+ ...+-|-+.+|.. .....++.++..+.-+|++.+|.+
T Consensus 160 pGTGKTm~Akalane~kvp--~-----l~v-------kat~liGehVGdg------ar~Ihely~rA~~~aPcivFiDE~ 219 (368)
T COG1223 160 PGTGKTMMAKALANEAKVP--L-----LLV-------KATELIGEHVGDG------ARRIHELYERARKAAPCIVFIDEL 219 (368)
T ss_pred CCccHHHHHHHHhcccCCc--e-----EEe-------chHHHHHHHhhhH------HHHHHHHHHHHHhcCCeEEEehhh
Confidence 6999999999999987754 3 112 1122233333221 233455666666667999999987
Q ss_pred CCc--------------cchhhccCCcCC--CCCCeEEEEEeCChhhhhccCC--CcceEecCCCCHHHHHHHHHHHhCC
Q 048755 82 WGS--------------LDLEAIGIPVAD--DNGGCKVLLTARSQDVLSCKMD--CQQNFVVDVLNEKEAWSLFKKMTGD 143 (674)
Q Consensus 82 ~~~--------------~~~~~l~~~~~~--~~~gs~ilvTtr~~~~~~~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~ 143 (674)
+-. +..+++...+.. .+.|-..|..|.+.+.+....+ ...-++..--+++|-.+++...+..
T Consensus 220 DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~ 299 (368)
T COG1223 220 DAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK 299 (368)
T ss_pred hhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh
Confidence 522 113333333322 3457677777777766532222 2334555556788888888888742
Q ss_pred CCCCCchhHHHHHHHHHhCCch
Q 048755 144 CIENGELKSVATEVVKECAGLP 165 (674)
Q Consensus 144 ~~~~~~~~~~~~~i~~~c~g~P 165 (674)
...+.+ ...+.++.+.+|..
T Consensus 300 ~Plpv~--~~~~~~~~~t~g~S 319 (368)
T COG1223 300 FPLPVD--ADLRYLAAKTKGMS 319 (368)
T ss_pred CCCccc--cCHHHHHHHhCCCC
Confidence 222211 22566677777653
No 236
>PRK12377 putative replication protein; Provisional
Probab=93.93 E-value=0.12 Score=49.75 Aligned_cols=65 Identities=23% Similarity=0.312 Sum_probs=40.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||.||.++++....+ ...++++++. ++...|-...... . ....+++.+. +-=|||+||+
T Consensus 110 ~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~---~----~~~~~l~~l~--~~dLLiIDDl 172 (248)
T PRK12377 110 PGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG---Q----SGEKFLQELC--KVDLLVLDEI 172 (248)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc---c----hHHHHHHHhc--CCCEEEEcCC
Confidence 5999999999999998855 3345665553 4555544332111 0 1123344443 4679999999
Q ss_pred CC
Q 048755 82 WG 83 (674)
Q Consensus 82 ~~ 83 (674)
..
T Consensus 173 g~ 174 (248)
T PRK12377 173 GI 174 (248)
T ss_pred CC
Confidence 43
No 237
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.93 E-value=0.2 Score=47.81 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=27.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEI 40 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 40 (674)
+|+|||++|.+++.+.... -..++|++.. .++.+.+
T Consensus 32 ~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 32 PGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 7999999999999887654 4578999887 5555444
No 238
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.86 E-value=0.19 Score=51.16 Aligned_cols=110 Identities=17% Similarity=0.133 Sum_probs=67.0
Q ss_pred CCCcHHHHHHHHHHhhhhcc-------------------cCceEEEEEecCCcC---HHHHHHHHHHHhCCCCcccchHH
Q 048755 2 GGIGKTTLVKEVGRQAKENN-------------------LFEKVISSRVSQTPQ---IKEIQREIAEKLGLKIDEESETV 59 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~-------------------~F~~~~wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~ 59 (674)
.|+||||+|.++++..-... ....+..++.++... ..+..+++.+.......
T Consensus 33 ~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~------ 106 (325)
T COG0470 33 PGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPL------ 106 (325)
T ss_pred CCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCCC------
Confidence 59999999999999876432 124566666666555 45566666655543321
Q ss_pred HHHHHHHHHHcCCcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCC
Q 048755 60 RAWRLLEQLKKETKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDV 127 (674)
Q Consensus 60 ~~~~~~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~ 127 (674)
.++.-++|+|+++... .-.++..-+......+++|++|....-. .........+++.+
T Consensus 107 ----------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 107 ----------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred ----------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCC
Confidence 3567899999998753 2344443444455677788777744332 21223345666665
No 239
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.75 E-value=0.66 Score=46.77 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=47.9
Q ss_pred CcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755 72 TKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG 148 (674)
Q Consensus 72 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 148 (674)
++=++|+|++.... .-+.+...+.....+..+|++|.+.... .........+.+.+++.+++...+.+. +. ..
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~-~~---~~ 188 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER-GV---AE 188 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc-CC---Cc
Confidence 33444567776542 2233322222222355577777765433 222344578899999999999887654 21 11
Q ss_pred chhHHHHHHHHHhCCchhh
Q 048755 149 ELKSVATEVVKECAGLPIA 167 (674)
Q Consensus 149 ~~~~~~~~i~~~c~g~Pla 167 (674)
.. ..+..++|-|+.
T Consensus 189 --~~---~~l~~~~g~p~~ 202 (325)
T PRK08699 189 --PE---ERLAFHSGAPLF 202 (325)
T ss_pred --HH---HHHHHhCCChhh
Confidence 11 123568898854
No 240
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.73 E-value=0.24 Score=49.36 Aligned_cols=74 Identities=23% Similarity=0.238 Sum_probs=45.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcc-----cchHHHHHHHHHHH-HcCCcEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDE-----ESETVRAWRLLEQL-KKETKIL 75 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~l-~~~kr~L 75 (674)
.|+||||||.+++...... -..++||+.-..++.. .+++++.+.+. ....+.+..+...+ ..+..-+
T Consensus 64 ~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~l 136 (321)
T TIGR02012 64 ESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDI 136 (321)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcE
Confidence 6999999999988877644 3458898887665543 35555543211 11222233333333 3456779
Q ss_pred EEEeCCC
Q 048755 76 IILDDIW 82 (674)
Q Consensus 76 lVlDdv~ 82 (674)
+|+|.|.
T Consensus 137 IVIDSv~ 143 (321)
T TIGR02012 137 IVVDSVA 143 (321)
T ss_pred EEEcchh
Confidence 9999985
No 241
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=93.73 E-value=1.8 Score=44.01 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=27.8
Q ss_pred CCcHHHHHHHHHHhhhhcc-cCceEEEEEecCCcC----HHHHHHHHHHHh
Q 048755 3 GIGKTTLVKEVGRQAKENN-LFEKVISSRVSQTPQ----IKEIQREIAEKL 48 (674)
Q Consensus 3 GiGKTtla~~~~~~~~~~~-~F~~~~wv~~~~~~~----~~~~~~~i~~~l 48 (674)
|+||||+.+.+.+...... .-..++|.+.....+ ...++.+|.+++
T Consensus 30 GsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 30 GSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred CCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 9999999999999888661 112244444433333 344455555544
No 242
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.64 E-value=0.24 Score=46.99 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=27.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIA 45 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 45 (674)
+|+||||+|.+++.....+ -..++|++....+. +-.++++
T Consensus 28 ~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~--~~~~~~~ 67 (218)
T cd01394 28 PGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS--ERFRQIA 67 (218)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH--HHHHHHH
Confidence 7999999999999887643 34678887655543 3334444
No 243
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.60 E-value=1.2 Score=43.86 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=42.7
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCChh-hhhccCCCcceEecCCCCHHHHHHHHH
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQD-VLSCKMDCQQNFVVDVLNEKEAWSLFK 138 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~-~~~~~~~~~~~~~l~~L~~~~~~~lf~ 138 (674)
+++=++|+|+++.. ...+++...+.....++.+|++|.+.. +........+.+.+.+ +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 45678999999876 346666666655556677777776654 4332234456777766 6666666664
No 244
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.57 E-value=0.25 Score=45.97 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=51.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH-cCCcEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLK-KETKILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~kr~LlVlDd 80 (674)
-|.|||+|++++.+.+..+ .-. -|.|++ .+...+..+.+.+. ..+||+|..||
T Consensus 94 RGtGKSSLVKA~~~e~~~~--glr--LVEV~k----------------------~dl~~Lp~l~~~Lr~~~~kFIlFcDD 147 (287)
T COG2607 94 RGTGKSSLVKALLNEYADE--GLR--LVEVDK----------------------EDLATLPDLVELLRARPEKFILFCDD 147 (287)
T ss_pred CCCChHHHHHHHHHHHHhc--CCe--EEEEcH----------------------HHHhhHHHHHHHHhcCCceEEEEecC
Confidence 4999999999999998876 322 222321 11122333444443 35799999999
Q ss_pred CCCc---cchhhccCCcCC---CCCCeEEEEEeCChhhh
Q 048755 81 IWGS---LDLEAIGIPVAD---DNGGCKVLLTARSQDVL 113 (674)
Q Consensus 81 v~~~---~~~~~l~~~~~~---~~~gs~ilvTtr~~~~~ 113 (674)
..-. ..+..++..+.. ..+...++..|.++.-+
T Consensus 148 LSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHL 186 (287)
T COG2607 148 LSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHL 186 (287)
T ss_pred CCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCccc
Confidence 8643 335555555433 23455677777776554
No 245
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.2 Score=53.79 Aligned_cols=151 Identities=17% Similarity=0.104 Sum_probs=76.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc--CHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEe
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP--QIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILD 79 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 79 (674)
.|+|||+||+++++.+. +++...+..|++++-. ..+.+++.+-.. +.+.+. -.+-++|||
T Consensus 440 ~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v----------------fse~~~-~~PSiIvLD 501 (952)
T KOG0735|consen 440 KGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV----------------FSEALW-YAPSIIVLD 501 (952)
T ss_pred CCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHH----------------HHHHHh-hCCcEEEEc
Confidence 59999999999999988 4455668888887532 333333332221 112222 358899999
Q ss_pred CCCCc--------cchhhc---cCCcC------CCCCCeE--EEEEeCChhhhhcc----CCCcceEecCCCCHHHHHHH
Q 048755 80 DIWGS--------LDLEAI---GIPVA------DDNGGCK--VLLTARSQDVLSCK----MDCQQNFVVDVLNEKEAWSL 136 (674)
Q Consensus 80 dv~~~--------~~~~~l---~~~~~------~~~~gs~--ilvTtr~~~~~~~~----~~~~~~~~l~~L~~~~~~~l 136 (674)
|++-. .+|... ...+. ....+.+ +|.|....+..... .-......+..+...+-.++
T Consensus 502 dld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~I 581 (952)
T KOG0735|consen 502 DLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEI 581 (952)
T ss_pred chhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHH
Confidence 98521 122211 00000 1123444 33343333322111 11234667788887777776
Q ss_pred HHHHhCCCCCCCchhHHHHHHHHHhCC-chhhHHHH
Q 048755 137 FKKMTGDCIENGELKSVATEVVKECAG-LPIAIVPV 171 (674)
Q Consensus 137 f~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plal~~~ 171 (674)
++.......... ..+...-+..+|+| .|..+..+
T Consensus 582 L~~~~s~~~~~~-~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 582 LTTIFSKNLSDI-TMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred HHHHHHhhhhhh-hhHHHHHHHHhcCCccchhHHHH
Confidence 665543222111 12223336667765 44444443
No 246
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.48 E-value=0.53 Score=41.99 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP 35 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~ 35 (674)
+|+||||+|..++...... -..++|++.....
T Consensus 8 ~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~ 39 (165)
T cd01120 8 TGSGKTTLALQLALNIATK--GGKVVYVDIEEEI 39 (165)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCEEEEEECCcch
Confidence 6999999999999887653 3457888776554
No 247
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.47 E-value=0.27 Score=47.17 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=39.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||+||.++++..... -..++++++ .++...+-.... . ... ....+.+.+. +.=+||+||+
T Consensus 108 ~GtGKThLa~aia~~l~~~--g~~v~~it~------~~l~~~l~~~~~-~-~~~----~~~~~l~~l~--~~dlLvIDDi 171 (244)
T PRK07952 108 PGTGKNHLAAAICNELLLR--GKSVLIITV------ADIMSAMKDTFS-N-SET----SEEQLLNDLS--NVDLLVIDEI 171 (244)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEEH------HHHHHHHHHHHh-h-ccc----cHHHHHHHhc--cCCEEEEeCC
Confidence 6999999999999988754 234565543 445544443321 1 111 1123444443 3558899999
Q ss_pred CCc
Q 048755 82 WGS 84 (674)
Q Consensus 82 ~~~ 84 (674)
...
T Consensus 172 g~~ 174 (244)
T PRK07952 172 GVQ 174 (244)
T ss_pred CCC
Confidence 654
No 248
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=1.6 Score=45.58 Aligned_cols=148 Identities=19% Similarity=0.267 Sum_probs=78.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHH---HHHHHHcCCcEEEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWR---LLEQLKKETKILIIL 78 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~---~~~~l~~~kr~LlVl 78 (674)
+|+|||+||..++..-. |..+=-++ ++++ .+..+...... +.+..-+..=-.||+
T Consensus 547 ~~sGKTaLAA~iA~~S~----FPFvKiiS------pe~m------------iG~sEsaKc~~i~k~F~DAYkS~lsiivv 604 (744)
T KOG0741|consen 547 PGSGKTALAAKIALSSD----FPFVKIIS------PEDM------------IGLSESAKCAHIKKIFEDAYKSPLSIIVV 604 (744)
T ss_pred CCCChHHHHHHHHhhcC----CCeEEEeC------hHHc------------cCccHHHHHHHHHHHHHHhhcCcceEEEE
Confidence 69999999999987544 54322211 1111 11122222222 222223345578999
Q ss_pred eCCCCccchhhccCCc---------------CCCCCCeEEEEEeCChhhhhccCC----CcceEecCCCCH-HHHHHHHH
Q 048755 79 DDIWGSLDLEAIGIPV---------------ADDNGGCKVLLTARSQDVLSCKMD----CQQNFVVDVLNE-KEAWSLFK 138 (674)
Q Consensus 79 Ddv~~~~~~~~l~~~~---------------~~~~~gs~ilvTtr~~~~~~~~~~----~~~~~~l~~L~~-~~~~~lf~ 138 (674)
||+...-+|-.+...+ |+.++.=-|+-||..+.++.. ++ ....+.++.++. ++..+.+.
T Consensus 605 DdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~-m~i~~~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 605 DDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQE-MGILDCFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred cchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHH-cCHHHhhhheeecCccCchHHHHHHHH
Confidence 9998776665443322 233333334457777777642 22 235778888886 77777776
Q ss_pred HHhCCCCCCCchhHHHHHHHHHhCCchhhHHHHHHHHh
Q 048755 139 KMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKALK 176 (674)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~ 176 (674)
..-- ..+......+++...+|.+ ..|+.+-..+.
T Consensus 684 ~~n~--fsd~~~~~~~~~~~~~~~~--vgIKklL~lie 717 (744)
T KOG0741|consen 684 ELNI--FSDDEVRAIAEQLLSKKVN--VGIKKLLMLIE 717 (744)
T ss_pred HccC--CCcchhHHHHHHHhccccc--hhHHHHHHHHH
Confidence 5431 1123344556666666633 34555444444
No 249
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.37 E-value=0.3 Score=48.78 Aligned_cols=74 Identities=23% Similarity=0.245 Sum_probs=45.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCc-----ccchHHHHHHHHHHH-HcCCcEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKID-----EESETVRAWRLLEQL-KKETKIL 75 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~l-~~~kr~L 75 (674)
+|+||||||.+++...... -..++||+.-..+++. .++.++.+.+ .....+.+..+.+.+ ..+.--+
T Consensus 64 ~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~l 136 (325)
T cd00983 64 ESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDL 136 (325)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCE
Confidence 6999999999998776644 3468899887766653 3444444321 111222233344444 3456679
Q ss_pred EEEeCCC
Q 048755 76 IILDDIW 82 (674)
Q Consensus 76 lVlDdv~ 82 (674)
+|+|.|.
T Consensus 137 IVIDSva 143 (325)
T cd00983 137 IVVDSVA 143 (325)
T ss_pred EEEcchH
Confidence 9999974
No 250
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.34 E-value=0.31 Score=49.74 Aligned_cols=80 Identities=20% Similarity=0.175 Sum_probs=49.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC-CcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.|+||||++.+++.+...+.....+..++... .....+-++...+.++.+.............+..+. ++=++++|.
T Consensus 146 tGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~--~~DlVLIDT 223 (374)
T PRK14722 146 TGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR--NKHMVLIDT 223 (374)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc--CCCEEEEcC
Confidence 69999999999999876442223466665433 235667777778888776543332222333444443 345677998
Q ss_pred CCC
Q 048755 81 IWG 83 (674)
Q Consensus 81 v~~ 83 (674)
...
T Consensus 224 aG~ 226 (374)
T PRK14722 224 IGM 226 (374)
T ss_pred CCC
Confidence 753
No 251
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.33 E-value=0.41 Score=48.26 Aligned_cols=49 Identities=22% Similarity=0.221 Sum_probs=34.4
Q ss_pred CCCcHHHHHHHHHHhhhhccc----CceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNL----FEKVISSRVSQTPQIKEIQREIAEKLGLK 51 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 51 (674)
+|+|||++|.+++........ =..++||+....++.+.+. ++++.++..
T Consensus 104 ~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~ 156 (310)
T TIGR02236 104 FGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLD 156 (310)
T ss_pred CCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCC
Confidence 699999999999877542110 1269999998888877654 445555443
No 252
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.27 E-value=0.31 Score=49.27 Aligned_cols=49 Identities=22% Similarity=0.179 Sum_probs=34.7
Q ss_pred CCCcHHHHHHHHHHhhhhc---c-cCceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 048755 2 GGIGKTTLVKEVGRQAKEN---N-LFEKVISSRVSQTPQIKEIQREIAEKLGLK 51 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~---~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 51 (674)
+|+|||++|..++-..... . .-..++||+....|+++.+ .+|++.++.+
T Consensus 132 ~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 132 FRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred CCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 6999999999888543311 1 1136999999998888765 4567776654
No 253
>PRK09354 recA recombinase A; Provisional
Probab=93.27 E-value=0.34 Score=48.83 Aligned_cols=74 Identities=23% Similarity=0.243 Sum_probs=47.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcc-----cchHHHHHHHHHHH-HcCCcEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDE-----ESETVRAWRLLEQL-KKETKIL 75 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~l-~~~kr~L 75 (674)
.|+||||||.+++...... -..++||+.-..++.. .++.++.+.+. ....+.+..+.+.+ ..++.-+
T Consensus 69 ~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~l 141 (349)
T PRK09354 69 ESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDL 141 (349)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCE
Confidence 6999999999998877654 3568999987777653 45555544211 11222233344444 3456779
Q ss_pred EEEeCCC
Q 048755 76 IILDDIW 82 (674)
Q Consensus 76 lVlDdv~ 82 (674)
+|+|.|.
T Consensus 142 IVIDSva 148 (349)
T PRK09354 142 IVVDSVA 148 (349)
T ss_pred EEEeChh
Confidence 9999985
No 254
>PHA00729 NTP-binding motif containing protein
Probab=93.22 E-value=0.24 Score=46.49 Aligned_cols=17 Identities=41% Similarity=0.474 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
+|+||||||..++++..
T Consensus 26 pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 26 QGSGKTTYALKVARDVF 42 (226)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 79999999999999754
No 255
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.16 E-value=0.29 Score=55.14 Aligned_cols=127 Identities=18% Similarity=0.238 Sum_probs=64.6
Q ss_pred CCCcHHHHHHHHHHhhhhcc-c---CceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENN-L---FEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILII 77 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~-~---F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlV 77 (674)
+|+|||++|+.++....... . .+..+|.. +.. .++. +....+ .-......+.+.+...++.+|+
T Consensus 216 pGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~----~lla--G~~~~G-e~e~rl~~l~~~l~~~~~~ILf 283 (758)
T PRK11034 216 SGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG----SLLA--GTKYRG-DFEKRFKALLKQLEQDTNSILF 283 (758)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH----HHhc--ccchhh-hHHHHHHHHHHHHHhcCCCEEE
Confidence 69999999999998764321 1 13444411 111 1110 111111 1122334455555545678999
Q ss_pred EeCCCCc----------cchhhccCCcCCCCCCeEEEEEeCChhhh------hccCCCcceEecCCCCHHHHHHHHHHHh
Q 048755 78 LDDIWGS----------LDLEAIGIPVADDNGGCKVLLTARSQDVL------SCKMDCQQNFVVDVLNEKEAWSLFKKMT 141 (674)
Q Consensus 78 lDdv~~~----------~~~~~l~~~~~~~~~gs~ilvTtr~~~~~------~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 141 (674)
+|++... .+...+..++...+ .-++|-+|...+.. ....+.-+.+.++..+.++..+++....
T Consensus 284 IDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 284 IDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred eccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 9998632 12222222222221 22344444433321 0011223578999999999999988654
No 256
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.02 E-value=0.34 Score=49.76 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=45.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCccc--chHHHHHHHHHHHHcCCcEEEEEe
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEE--SETVRAWRLLEQLKKETKILIILD 79 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~~kr~LlVlD 79 (674)
+|+|||||+.+++...... -..++|++... +..++ +.-++.++...+.. ........+.+.+...+.-++|+|
T Consensus 91 pG~GKStLllq~a~~~a~~--g~~VlYvs~EE--s~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lVVID 165 (372)
T cd01121 91 PGIGKSTLLLQVAARLAKR--GGKVLYVSGEE--SPEQI-KLRADRLGISTENLYLLAETNLEDILASIEELKPDLVIID 165 (372)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEECCc--CHHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEEEEc
Confidence 6999999999999887754 34678877643 33332 22245555432221 111223445555544467788999
Q ss_pred CCC
Q 048755 80 DIW 82 (674)
Q Consensus 80 dv~ 82 (674)
.+.
T Consensus 166 SIq 168 (372)
T cd01121 166 SIQ 168 (372)
T ss_pred chH
Confidence 874
No 257
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.01 E-value=0.63 Score=53.88 Aligned_cols=125 Identities=16% Similarity=0.255 Sum_probs=63.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccC----ce-EEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH-cCCcEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLF----EK-VISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLK-KETKIL 75 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F----~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~kr~L 75 (674)
+|+|||++|+.++.+....... .. ++.++++. +. . +..... .-......+++.+. .+++.+
T Consensus 203 pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~------l~----a--~~~~~g-~~e~~l~~~l~~~~~~~~~~I 269 (852)
T TIGR03346 203 PGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA------LI----A--GAKYRG-EFEERLKAVLNEVTKSEGQII 269 (852)
T ss_pred CCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH------Hh----h--cchhhh-hHHHHHHHHHHHHHhcCCCeE
Confidence 6999999999999987543111 22 33333211 10 0 000011 11223444555553 246899
Q ss_pred EEEeCCCCcc---------chhhccCCcCCCCCCe-EEEEEeCChhhh------hccCCCcceEecCCCCHHHHHHHHHH
Q 048755 76 IILDDIWGSL---------DLEAIGIPVADDNGGC-KVLLTARSQDVL------SCKMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 76 lVlDdv~~~~---------~~~~l~~~~~~~~~gs-~ilvTtr~~~~~------~~~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
|++|++.... +...+..+.. ..|. ++|.+|...+.. ....+.-+.+.++..+.++..+++..
T Consensus 270 LfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~ 347 (852)
T TIGR03346 270 LFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRG 347 (852)
T ss_pred EEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHH
Confidence 9999986331 1122222222 2232 344444433220 00112335678898999999998875
Q ss_pred Hh
Q 048755 140 MT 141 (674)
Q Consensus 140 ~~ 141 (674)
..
T Consensus 348 ~~ 349 (852)
T TIGR03346 348 LK 349 (852)
T ss_pred HH
Confidence 54
No 258
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.93 E-value=0.24 Score=46.79 Aligned_cols=160 Identities=15% Similarity=0.167 Sum_probs=101.8
Q ss_pred cCCCCCcEEEcccCCCccc----CchhhcCCCcceEEEecCcccCCCC-cc-------------cccccCCcEEEcCCcC
Q 048755 327 FECPQLKYFHIRNDPSLRI----SDNIFTGMTELRVLDFTEMHLLALP-SS-------------LGLLQNLQTLSLDFCI 388 (674)
Q Consensus 327 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~Lr~L~l~~~~~~~lp-~~-------------~~~l~~L~~L~l~~~~ 388 (674)
..|++|+..+++.|.+..- ....+++-..|.+|.+++|.+..+. .. ...-+.|+++...+|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 4788888888888765442 2344667788888888888765321 11 2234678888888887
Q ss_pred CCC-c-----ccccCcCCccEEecCCCCchh-----c-hHhhcCCCCCcEEeCCCCCCCCCCC---hhhhhCCCCCCeEE
Q 048755 389 LGD-I-----AIIGDLKKLEILTLRGSDMEK-----L-VEEMGELTQLRLLDLSYCFNLQVIP---PNVISSLSRLEELY 453 (674)
Q Consensus 389 ~~~-~-----~~~~~l~~L~~L~l~~~~~~~-----l-p~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~ 453 (674)
+.. + ..+..-.+|+++.+..|.|.. + -.++..+++|..|++..|.....-. ...+..++.|++|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 755 2 123344688888888887651 1 2456778899999998874432211 12256788889999
Q ss_pred eccCCCccccccccCCcccccchhhhc--CCCCccEEEeeecc
Q 048755 454 IGQSPIMWGKVGGVDGERRNASLDELN--NLSKLTSLEILIQD 494 (674)
Q Consensus 454 l~~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~ 494 (674)
+.+|-+. ..+...++..+. ..++|+.|....|.
T Consensus 249 lnDClls--------~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 249 LNDCLLS--------NEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred ccchhhc--------cccHHHHHHHhhhhcCCCccccccchhh
Confidence 8888652 112333444443 34778888777654
No 259
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.86 E-value=0.41 Score=45.31 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=32.7
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEE-------ecCCcCHHHH--HHHHHHHhCCCC
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSR-------VSQTPQIKEI--QREIAEKLGLKI 52 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~-------~~~~~~~~~~--~~~i~~~l~~~~ 52 (674)
|+|+||||+.+.++.+...++.-..++=.+ ..-+.++++. .+++.++-+...
T Consensus 27 MAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 27 MAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred cCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 899999999999999998773322233221 1113355555 456777755443
No 260
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.83 E-value=0.13 Score=51.65 Aligned_cols=92 Identities=18% Similarity=0.217 Sum_probs=47.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||.||.++++....+. ..|+++++. ++...+...- .... .+ .....+.+. .-=|||+||+
T Consensus 192 ~GtGKThLa~aIa~~l~~~g--~~V~y~t~~------~l~~~l~~~~-~~~~--~~---~~~~~~~l~--~~DLLIIDDl 255 (329)
T PRK06835 192 TGTGKTFLSNCIAKELLDRG--KSVIYRTAD------ELIEILREIR-FNND--KE---LEEVYDLLI--NCDLLIIDDL 255 (329)
T ss_pred CCCcHHHHHHHHHHHHHHCC--CeEEEEEHH------HHHHHHHHHH-hccc--hh---HHHHHHHhc--cCCEEEEecc
Confidence 59999999999999887652 246665543 3444443321 1110 01 111133443 2458999999
Q ss_pred CCc--cchh--hccCCcCCC-CCCeEEEEEeCC
Q 048755 82 WGS--LDLE--AIGIPVADD-NGGCKVLLTARS 109 (674)
Q Consensus 82 ~~~--~~~~--~l~~~~~~~-~~gs~ilvTtr~ 109 (674)
... .+|. .+..-+... ..+-.+||||..
T Consensus 256 G~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 256 GTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 544 2332 121111111 124457787774
No 261
>PRK06921 hypothetical protein; Provisional
Probab=92.82 E-value=0.39 Score=46.93 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=36.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||.||.++++....+.. ..++++.. .+++..+.... ......++.+. +-=||||||+
T Consensus 126 ~G~GKThLa~aia~~l~~~~g-~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~~--~~dlLiIDDl 186 (266)
T PRK06921 126 PGSGKTHLLTAAANELMRKKG-VPVLYFPF------VEGFGDLKDDF----------DLLEAKLNRMK--KVEVLFIDDL 186 (266)
T ss_pred CCCcHHHHHHHHHHHHhhhcC-ceEEEEEH------HHHHHHHHHHH----------HHHHHHHHHhc--CCCEEEEecc
Confidence 699999999999998775422 34566554 23333332221 11122333333 3569999999
No 262
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.78 E-value=0.067 Score=27.31 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=6.3
Q ss_pred CccEEecCCCCchhch
Q 048755 400 KLEILTLRGSDMEKLV 415 (674)
Q Consensus 400 ~L~~L~l~~~~~~~lp 415 (674)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 263
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.76 E-value=0.6 Score=53.25 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=71.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||++|+++++..... | +.++.+. +.. . ... ........+.+......+.+|++|++
T Consensus 221 pGtGKT~laraia~~~~~~--~---i~i~~~~------i~~----~----~~g-~~~~~l~~lf~~a~~~~p~il~iDEi 280 (733)
T TIGR01243 221 PGTGKTLLAKAVANEAGAY--F---ISINGPE------IMS----K----YYG-ESEERLREIFKEAEENAPSIIFIDEI 280 (733)
T ss_pred CCCChHHHHHHHHHHhCCe--E---EEEecHH------Hhc----c----ccc-HHHHHHHHHHHHHHhcCCcEEEeehh
Confidence 6999999999999976533 2 2233211 110 0 000 11223344444444556789999998
Q ss_pred CCcc--------c-----hhhccCCcCC-CCCCeEEEE-EeCChhhhh----ccCCCcceEecCCCCHHHHHHHHHHHhC
Q 048755 82 WGSL--------D-----LEAIGIPVAD-DNGGCKVLL-TARSQDVLS----CKMDCQQNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 82 ~~~~--------~-----~~~l~~~~~~-~~~gs~ilv-Ttr~~~~~~----~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
+... + ...+...+.. ...+..+++ ||....... ........+.++..+.++-.+++.....
T Consensus 281 d~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~ 360 (733)
T TIGR01243 281 DAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR 360 (733)
T ss_pred hhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc
Confidence 5320 0 1112111111 122334444 444332211 1112235677888888888888886553
Q ss_pred CCCCCCchhHHHHHHHHHhCCch
Q 048755 143 DCIENGELKSVATEVVKECAGLP 165 (674)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~c~g~P 165 (674)
...... ......+++.+.|.-
T Consensus 361 ~~~l~~--d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 361 NMPLAE--DVDLDKLAEVTHGFV 381 (733)
T ss_pred CCCCcc--ccCHHHHHHhCCCCC
Confidence 221111 122567778887764
No 264
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=92.74 E-value=0.72 Score=51.44 Aligned_cols=141 Identities=22% Similarity=0.285 Sum_probs=72.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+.+++..... | +.++.++ +.. + ..+. .......+........+++|++|++
T Consensus 194 ~G~GKt~~~~~~a~~~~~~--f---~~is~~~------~~~-~--~~g~------~~~~~~~~f~~a~~~~P~IifIDEi 253 (644)
T PRK10733 194 PGTGKTLLAKAIAGEAKVP--F---FTISGSD------FVE-M--FVGV------GASRVRDMFEQAKKAAPCIIFIDEI 253 (644)
T ss_pred CCCCHHHHHHHHHHHcCCC--E---EEEehHH------hHH-h--hhcc------cHHHHHHHHHHHHhcCCcEEEehhH
Confidence 6999999999998876643 3 2232221 111 0 0010 1112233334444456899999998
Q ss_pred CCcc------------c----hhhccCCcCCC--CCCeEEEEEeCChhhhhcc----CCCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGSL------------D----LEAIGIPVADD--NGGCKVLLTARSQDVLSCK----MDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~~------------~----~~~l~~~~~~~--~~gs~ilvTtr~~~~~~~~----~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+... . ...+...+... ..+..+|.||...+..... -+....+.++.-+.++-.+++..
T Consensus 254 D~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~ 333 (644)
T PRK10733 254 DAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKV 333 (644)
T ss_pred hhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHH
Confidence 6430 0 11121112111 2344555566655543111 12346778888888888888887
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCc
Q 048755 140 MTGDCIENGELKSVATEVVKECAGL 164 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~ 164 (674)
+.......+... ...+++.+.|.
T Consensus 334 ~~~~~~l~~~~d--~~~la~~t~G~ 356 (644)
T PRK10733 334 HMRRVPLAPDID--AAIIARGTPGF 356 (644)
T ss_pred HhhcCCCCCcCC--HHHHHhhCCCC
Confidence 775322111111 23456666553
No 265
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=92.67 E-value=1.6 Score=47.18 Aligned_cols=163 Identities=17% Similarity=0.088 Sum_probs=91.0
Q ss_pred CCCcHHHHHHHHHHhhh---hc---ccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH----cC
Q 048755 2 GGIGKTTLVKEVGRQAK---EN---NLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLK----KE 71 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~---~~---~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~ 71 (674)
+|+|||..+..|-+... .+ ..|+ .+.|+.-+-..+.+++..|.+.+.......... +..+-.+.. ..
T Consensus 431 PGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~a--l~~L~~~f~~~k~~~ 507 (767)
T KOG1514|consen 431 PGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYEKIWEALSGERVTWDAA--LEALNFRFTVPKPKR 507 (767)
T ss_pred CCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHHHHHHhcccCcccHHHH--HHHHHHhhccCCCCC
Confidence 69999999999998655 22 2343 456677777789999999999987664433221 222222222 34
Q ss_pred CcEEEEEeCCCCc-----cchhhccCCcCC-CCCCeEEEEEeC-----C-hhhhh-c--cCCCcceEecCCCCHHHHHHH
Q 048755 72 TKILIILDDIWGS-----LDLEAIGIPVAD-DNGGCKVLLTAR-----S-QDVLS-C--KMDCQQNFVVDVLNEKEAWSL 136 (674)
Q Consensus 72 kr~LlVlDdv~~~-----~~~~~l~~~~~~-~~~gs~ilvTtr-----~-~~~~~-~--~~~~~~~~~l~~L~~~~~~~l 136 (674)
+..++++|+++.. +.+..+ |.| ..+++|++|.+= - +.++. . .--+-..+..++.+.++-.++
T Consensus 508 ~~~VvLiDElD~Lvtr~QdVlYn~---fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~I 584 (767)
T KOG1514|consen 508 STTVVLIDELDILVTRSQDVLYNI---FDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEI 584 (767)
T ss_pred CCEEEEeccHHHHhcccHHHHHHH---hcCCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHH
Confidence 6789999988643 112222 223 356777666431 1 11111 0 001234667778888888888
Q ss_pred HHHHhCCC--CCCCchhHHHHHHHHHhCCchhhHHH
Q 048755 137 FKKMTGDC--IENGELKSVATEVVKECAGLPIAIVP 170 (674)
Q Consensus 137 f~~~~~~~--~~~~~~~~~~~~i~~~c~g~Plal~~ 170 (674)
...+..+. ......+-++++|+.-.|..-.|+..
T Consensus 585 i~~RL~~~~~f~~~aielvarkVAavSGDaRraldi 620 (767)
T KOG1514|consen 585 ISARLKGLDAFENKAIELVARKVAAVSGDARRALDI 620 (767)
T ss_pred HHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHH
Confidence 87776422 22222233444444444444444333
No 266
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=92.62 E-value=0.47 Score=47.67 Aligned_cols=49 Identities=22% Similarity=0.154 Sum_probs=32.9
Q ss_pred CCCcHHHHHHHHHHhhhh---cc-cCceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 048755 2 GGIGKTTLVKEVGRQAKE---NN-LFEKVISSRVSQTPQIKEIQREIAEKLGLK 51 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~---~~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 51 (674)
+|+|||++|..++..... .. .-..++||+....++.+. +.++++.++..
T Consensus 105 ~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~ 157 (316)
T TIGR02239 105 FRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLN 157 (316)
T ss_pred CCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCC
Confidence 699999999998864321 11 123589999988777776 44456665543
No 267
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.62 E-value=1 Score=52.05 Aligned_cols=126 Identities=13% Similarity=0.214 Sum_probs=61.3
Q ss_pred CCCcHHHHHHHHHHhhhhccc----Cc-eEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH-cCCcEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNL----FE-KVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLK-KETKIL 75 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~----F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~kr~L 75 (674)
+|+|||++|+.++.+...... .. .++.++++.-. . +..... .-...+..+++.+. .+++.+
T Consensus 208 pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~----------a--g~~~~g-~~e~~lk~~~~~~~~~~~~~I 274 (857)
T PRK10865 208 PGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV----------A--GAKYRG-EFEERLKGVLNDLAKQEGNVI 274 (857)
T ss_pred CCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhh----------h--ccchhh-hhHHHHHHHHHHHHHcCCCeE
Confidence 699999999999998754211 12 23334443210 0 000011 11123344444432 346899
Q ss_pred EEEeCCCCcc---------chhhccCCcCCCCCCeEEEEEeCChhhh------hccCCCcceEecCCCCHHHHHHHHHHH
Q 048755 76 IILDDIWGSL---------DLEAIGIPVADDNGGCKVLLTARSQDVL------SCKMDCQQNFVVDVLNEKEAWSLFKKM 140 (674)
Q Consensus 76 lVlDdv~~~~---------~~~~l~~~~~~~~~gs~ilvTtr~~~~~------~~~~~~~~~~~l~~L~~~~~~~lf~~~ 140 (674)
|++|++.... +...+..+....+ .-++|-+|...+.. ....+.-+.+.+..-+.++..+++...
T Consensus 275 LfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l 353 (857)
T PRK10865 275 LFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGL 353 (857)
T ss_pred EEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHH
Confidence 9999986431 1222322222222 22344444333320 001122235666766888888887654
Q ss_pred h
Q 048755 141 T 141 (674)
Q Consensus 141 ~ 141 (674)
.
T Consensus 354 ~ 354 (857)
T PRK10865 354 K 354 (857)
T ss_pred h
Confidence 4
No 268
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=92.57 E-value=0.64 Score=46.95 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=34.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccC----ceEEEEEecCCcCHHHHHHHHHHHhCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLF----EKVISSRVSQTPQIKEIQREIAEKLGL 50 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~i~~~l~~ 50 (674)
+|+|||++|.+++........+ ..++||+....++++.+.+ +++.++.
T Consensus 111 ~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 111 FGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 6999999999998765432111 3699999988888776654 4455544
No 269
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.56 E-value=0.77 Score=44.46 Aligned_cols=83 Identities=19% Similarity=0.222 Sum_probs=50.2
Q ss_pred CCCcHHHHHHHHHHhhh--hcccCceEEEEEecCCc-CHHHHHHHHHHHhCCCC-------cccchHH------HHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAK--ENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKI-------DEESETV------RAWRLL 65 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~--~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~------~~~~~~ 65 (674)
+|+|||+|+..++++.. .+..-+.++++-+.+.. .+.++.+++.+.=.... .+++... ....+.
T Consensus 78 ~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiA 157 (276)
T cd01135 78 SGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTA 157 (276)
T ss_pred CCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 58999999999988764 12223567777776544 56777777665422211 1111111 123345
Q ss_pred HHHH-c-CCcEEEEEeCCCCc
Q 048755 66 EQLK-K-ETKILIILDDIWGS 84 (674)
Q Consensus 66 ~~l~-~-~kr~LlVlDdv~~~ 84 (674)
++.. + ++++|+++||+...
T Consensus 158 Eyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 158 EYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHhccCCeEEEEEcChhHH
Confidence 5554 2 69999999998654
No 270
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=92.56 E-value=0.57 Score=45.66 Aligned_cols=79 Identities=16% Similarity=0.151 Sum_probs=48.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHc---CCcEEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLK-IDEESETVRAWRLLEQLKK---ETKILII 77 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~~~~l~~---~kr~LlV 77 (674)
.|.||||+|-+++-..... -..++||+.-..++++.+.+--...+..- .......+.+.++.+.+.. .+--|+|
T Consensus 69 ~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvV 146 (279)
T COG0468 69 ESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLV 146 (279)
T ss_pred CCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHHhccCCCCEEE
Confidence 5899999999988766644 34799999988888776544333312111 1122233334444444432 1356999
Q ss_pred EeCCC
Q 048755 78 LDDIW 82 (674)
Q Consensus 78 lDdv~ 82 (674)
+|.|-
T Consensus 147 VDSva 151 (279)
T COG0468 147 VDSVA 151 (279)
T ss_pred EecCc
Confidence 99884
No 271
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=0.3 Score=45.83 Aligned_cols=61 Identities=25% Similarity=0.359 Sum_probs=37.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|.|||-.|++|+|+-... |-.++ . -+-+++-+-+. .....++.+-...+|-|++.||.+
T Consensus 220 pgtgktl~aravanrtdac--firvi-----g---selvqkyvgeg----------armvrelf~martkkaciiffdei 279 (435)
T KOG0729|consen 220 PGTGKTLCARAVANRTDAC--FIRVI-----G---SELVQKYVGEG----------ARMVRELFEMARTKKACIIFFDEI 279 (435)
T ss_pred CCCchhHHHHHHhcccCce--EEeeh-----h---HHHHHHHhhhh----------HHHHHHHHHHhcccceEEEEeecc
Confidence 6999999999999987744 53333 1 12222222111 122345555556778899999987
Q ss_pred C
Q 048755 82 W 82 (674)
Q Consensus 82 ~ 82 (674)
+
T Consensus 280 d 280 (435)
T KOG0729|consen 280 D 280 (435)
T ss_pred c
Confidence 4
No 272
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=1 Score=49.74 Aligned_cols=146 Identities=21% Similarity=0.189 Sum_probs=87.8
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.+|+|||-||+++|-...+- +++++.. + ..+-+.. ........+........++++.+|+
T Consensus 352 PPGTGKTLLAKAiAGEAgVP-------F~svSGS----E----FvE~~~g-----~~asrvr~lf~~ar~~aP~iifide 411 (774)
T KOG0731|consen 352 PPGTGKTLLAKAIAGEAGVP-------FFSVSGS----E----FVEMFVG-----VGASRVRDLFPLARKNAPSIIFIDE 411 (774)
T ss_pred CCCCcHHHHHHHHhcccCCc-------eeeechH----H----HHHHhcc-----cchHHHHHHHHHhhccCCeEEEecc
Confidence 37999999999999877654 3444421 1 1111111 1133445566666667889999998
Q ss_pred CCCc---c--------------chhhccCCcCCCC--CCeEEEEEeCChhhhh----ccCCCcceEecCCCCHHHHHHHH
Q 048755 81 IWGS---L--------------DLEAIGIPVADDN--GGCKVLLTARSQDVLS----CKMDCQQNFVVDVLNEKEAWSLF 137 (674)
Q Consensus 81 v~~~---~--------------~~~~l~~~~~~~~--~gs~ilvTtr~~~~~~----~~~~~~~~~~l~~L~~~~~~~lf 137 (674)
++.. . -++++......+. .+-.++.+|...+++. +.-+..+.+.++.=+.....++|
T Consensus 412 ida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~ 491 (774)
T KOG0731|consen 412 IDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASIL 491 (774)
T ss_pred cccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHH
Confidence 7532 1 0233322332222 2334444666666652 11134567888888888999999
Q ss_pred HHHhCCCCCCCchhHHHHHHHHHhCCchhh
Q 048755 138 KKMTGDCIENGELKSVATEVVKECAGLPIA 167 (674)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 167 (674)
.-++.......+..++.+ ++....|.+=|
T Consensus 492 ~~h~~~~~~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 492 KVHLRKKKLDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred HHHhhccCCCcchhhHHH-HHhcCCCCcHH
Confidence 998874444455667777 88888888754
No 273
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.44 E-value=0.39 Score=46.56 Aligned_cols=66 Identities=24% Similarity=0.295 Sum_probs=40.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||.||.++.++.. +..+ .+.+++ ..++.+++....... ....++.+.+. +-=||||||+
T Consensus 114 ~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~~-------~~~~~l~~~l~--~~dlLIiDDl 176 (254)
T COG1484 114 PGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDEG-------RLEEKLLRELK--KVDLLIIDDI 176 (254)
T ss_pred CCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhcC-------chHHHHHHHhh--cCCEEEEecc
Confidence 59999999999999999 4334 344444 455666666554321 11112222232 3459999999
Q ss_pred CCc
Q 048755 82 WGS 84 (674)
Q Consensus 82 ~~~ 84 (674)
...
T Consensus 177 G~~ 179 (254)
T COG1484 177 GYE 179 (254)
T ss_pred cCc
Confidence 653
No 274
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.40 E-value=0.69 Score=44.17 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=27.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLG 49 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 49 (674)
.|+||||+|.+++.....+. ..+++++ ...+..++.+++ .+++
T Consensus 33 ~G~GKTtl~~~~~~~~~~~g--~~~~yi~--~e~~~~~~~~~~-~~~g 75 (230)
T PRK08533 33 ESTGKSILSQRLAYGFLQNG--YSVSYVS--TQLTTTEFIKQM-MSLG 75 (230)
T ss_pred CCCCHHHHHHHHHHHHHhCC--CcEEEEe--CCCCHHHHHHHH-HHhC
Confidence 69999999977776654332 3456655 344567777776 3444
No 275
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=92.31 E-value=0.43 Score=44.74 Aligned_cols=77 Identities=21% Similarity=0.438 Sum_probs=45.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-cCHHHHHHHHHHHhCCC-------CcccchHH------HHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLK-------IDEESETV------RAWRLLEQ 67 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~------~~~~~~~~ 67 (674)
+|+|||+|+..+++..... .++.+-+.+. ..+.++.+++...-... ...++... ....+.++
T Consensus 24 ~g~GKt~Ll~~i~~~~~~d----~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~t~AEy 99 (215)
T PF00006_consen 24 AGVGKTVLLQEIANNQDAD----VVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTALTIAEY 99 (215)
T ss_dssp TTSSHHHHHHHHHHHCTTT----EEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHhccccc----ceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccchhhhHH
Confidence 6999999999999988633 4577777644 46666666664431111 11111111 11223333
Q ss_pred HH-cCCcEEEEEeCCC
Q 048755 68 LK-KETKILIILDDIW 82 (674)
Q Consensus 68 l~-~~kr~LlVlDdv~ 82 (674)
+. .||.+|+++||+.
T Consensus 100 frd~G~dVlli~Dslt 115 (215)
T PF00006_consen 100 FRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHTTSEEEEEEETHH
T ss_pred HhhcCCceeehhhhhH
Confidence 33 5799999999984
No 276
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.26 E-value=0.089 Score=26.86 Aligned_cols=16 Identities=44% Similarity=0.760 Sum_probs=6.8
Q ss_pred cceEEEecCcccCCCC
Q 048755 355 ELRVLDFTEMHLLALP 370 (674)
Q Consensus 355 ~Lr~L~l~~~~~~~lp 370 (674)
+|++|++++|.+.++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666555443
No 277
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.23 E-value=0.38 Score=46.93 Aligned_cols=104 Identities=23% Similarity=0.263 Sum_probs=56.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCC-CC-------cccchHHHHHHHHHHHHcCCc
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGL-KI-------DEESETVRAWRLLEQLKKETK 73 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~-------~~~~~~~~~~~~~~~l~~~kr 73 (674)
.|.||||+.+.++...... .+.++++-.+-. ..+-.++++..... .. +..+.......+...+..-.+
T Consensus 120 ~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~-~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~~~~P 195 (270)
T TIGR02858 120 PQCGKTTLLRDLARILSTG---ISQLGLRGKKVG-IVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIRSMSP 195 (270)
T ss_pred CCCCHHHHHHHHhCccCCC---CceEEECCEEee-cchhHHHHHHHhcccccccccccccccccchHHHHHHHHHHhCCC
Confidence 5999999999999877643 233443211110 01111233322211 11 111111123334444443468
Q ss_pred EEEEEeCCCCccchhhccCCcCCCCCCeEEEEEeCChhh
Q 048755 74 ILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDV 112 (674)
Q Consensus 74 ~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~ 112 (674)
=++++|++...+.+..+...+. .|..+|+||.+..+
T Consensus 196 ~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 196 DVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred CEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 8999999987766666544432 47789999997665
No 278
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=2.9 Score=44.63 Aligned_cols=121 Identities=21% Similarity=0.327 Sum_probs=72.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||-||++|+|..... | ++|..+ +++.. .+| +. .-.+.++.++.+..-+|.|+||.+
T Consensus 554 PGCGKTLlAKAVANEag~N--F-----isVKGP----ELlNk---YVG-----ES-ErAVR~vFqRAR~saPCVIFFDEi 613 (802)
T KOG0733|consen 554 PGCGKTLLAKAVANEAGAN--F-----ISVKGP----ELLNK---YVG-----ES-ERAVRQVFQRARASAPCVIFFDEI 613 (802)
T ss_pred CCccHHHHHHHHhhhccCc--e-----EeecCH----HHHHH---Hhh-----hH-HHHHHHHHHHhhcCCCeEEEecch
Confidence 7999999999999988866 4 455432 12111 111 11 123445666777778999999998
Q ss_pred CCc-------------cchhhccCCcCC--CCCCeEEEEEeCChhhhh-ccC---CCcceEecCCCCHHHHHHHHHHHhC
Q 048755 82 WGS-------------LDLEAIGIPVAD--DNGGCKVLLTARSQDVLS-CKM---DCQQNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 82 ~~~-------------~~~~~l~~~~~~--~~~gs~ilvTtr~~~~~~-~~~---~~~~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
+-. ...+.+..-+.. ...|--||-.|-.+++.. ... +-...+-++.=+.+|-..+++..+.
T Consensus 614 DaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 614 DALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred hhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 632 113333333322 223555555555454431 111 2345677888888999999988875
No 279
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.05 E-value=0.11 Score=43.95 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
.+|+||||+|++++++..
T Consensus 7 ~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 7 PPGSGKSTLAKELAERLG 24 (121)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHC
Confidence 479999999999999873
No 280
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.02 E-value=0.77 Score=41.67 Aligned_cols=81 Identities=22% Similarity=0.255 Sum_probs=41.0
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc-CHHHHHHHHHHHhCCCCc----ccchHHHHHHHHHHHHcCCcEE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKID----EESETVRAWRLLEQLKKETKIL 75 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~~l~~~kr~L 75 (674)
.+|+||||+++.++....... + .++.++..... ...+.+...++..+.+.. .........+.......+..-+
T Consensus 8 ~~G~GKTt~~~~la~~~~~~g-~-~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 85 (173)
T cd03115 8 LQGVGKTTTAAKLALYLKKKG-K-KVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREENFDV 85 (173)
T ss_pred CCCCCHHHHHHHHHHHHHHCC-C-cEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 479999999999998877541 2 34445543221 233334444444443211 1122222333333333333335
Q ss_pred EEEeCCCC
Q 048755 76 IILDDIWG 83 (674)
Q Consensus 76 lVlDdv~~ 83 (674)
+|+|....
T Consensus 86 viiDt~g~ 93 (173)
T cd03115 86 VIVDTAGR 93 (173)
T ss_pred EEEECccc
Confidence 66887644
No 281
>PTZ00035 Rad51 protein; Provisional
Probab=91.82 E-value=0.88 Score=46.14 Aligned_cols=49 Identities=24% Similarity=0.182 Sum_probs=32.3
Q ss_pred CCCcHHHHHHHHHHhhhh---cc-cCceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 048755 2 GGIGKTTLVKEVGRQAKE---NN-LFEKVISSRVSQTPQIKEIQREIAEKLGLK 51 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~---~~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 51 (674)
.|+|||+++..++-.... .. .=..++||+....++++. +.++++..+..
T Consensus 127 ~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~ 179 (337)
T PTZ00035 127 FRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLD 179 (337)
T ss_pred CCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCC
Confidence 699999999998755431 11 113578999887777776 44456665543
No 282
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.81 E-value=0.31 Score=56.14 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=39.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||++|+.+++..-.. -...+-++.+...+... +...++.+....+ ......+.+.+.....-+++||++
T Consensus 548 ~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~----~~~l~g~~~gyvg-~~~~~~l~~~~~~~p~~VvllDei 620 (821)
T CHL00095 548 TGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHT----VSKLIGSPPGYVG-YNEGGQLTEAVRKKPYTVVLFDEI 620 (821)
T ss_pred CCCcHHHHHHHHHHHhcCC--ccceEEEEchhcccccc----HHHhcCCCCcccC-cCccchHHHHHHhCCCeEEEECCh
Confidence 6999999999999876432 12344555554322111 2222232211111 001123344455444468999999
Q ss_pred CCc
Q 048755 82 WGS 84 (674)
Q Consensus 82 ~~~ 84 (674)
+..
T Consensus 621 eka 623 (821)
T CHL00095 621 EKA 623 (821)
T ss_pred hhC
Confidence 865
No 283
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.80 E-value=0.42 Score=40.77 Aligned_cols=106 Identities=19% Similarity=0.339 Sum_probs=56.0
Q ss_pred cCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEEcCCcCCCCc--ccccCcCCccEEecCCCCchhchH-hhcC
Q 048755 345 ISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDFCILGDI--AIIGDLKKLEILTLRGSDMEKLVE-EMGE 420 (674)
Q Consensus 345 ~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~ 420 (674)
++...|.++.+|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +..+ ..+..+.+|+.+.+.. .+..++. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4566788888999999875 466664 45777778888888764 4442 4456666788888855 5555553 3555
Q ss_pred CCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEecc
Q 048755 421 LTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQ 456 (674)
Q Consensus 421 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 456 (674)
+++|+.+.+..+ +..++...+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 777877777542 344444445665 677766543
No 284
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=91.71 E-value=1.3 Score=50.64 Aligned_cols=19 Identities=32% Similarity=0.578 Sum_probs=16.6
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
+|+|||++|+.+++.....
T Consensus 356 pG~GKT~lAk~iA~~l~~~ 374 (775)
T TIGR00763 356 PGVGKTSLGKSIAKALNRK 374 (775)
T ss_pred CCCCHHHHHHHHHHHhcCC
Confidence 6999999999999987644
No 285
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.70 E-value=0.77 Score=41.13 Aligned_cols=107 Identities=22% Similarity=0.207 Sum_probs=57.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC---cCHHHHHHHHHHHh-----CCC----C-cccchHHHHH----HH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT---PQIKEIQREIAEKL-----GLK----I-DEESETVRAW----RL 64 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~~~l-----~~~----~-~~~~~~~~~~----~~ 64 (674)
.|.||||.|..++-+...... .|..+.+-+. ......++.+ .+ +.. . ....+...+. ..
T Consensus 14 ~GkGKtt~a~g~a~ra~~~g~--~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~a 89 (173)
T TIGR00708 14 NGKGKTTAAFGMALRALGHGK--KVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAIAKAAWQHA 89 (173)
T ss_pred CCCChHHHHHHHHHHHHHCCC--eEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHHHHHHHHHH
Confidence 489999999999998886532 3444444332 2333344332 11 110 0 0011111122 22
Q ss_pred HHHHHcCCcEEEEEeCCCCc-----cchhhccCCcCCCCCCeEEEEEeCChhh
Q 048755 65 LEQLKKETKILIILDDIWGS-----LDLEAIGIPVADDNGGCKVLLTARSQDV 112 (674)
Q Consensus 65 ~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~ilvTtr~~~~ 112 (674)
.+.+..++-=++|||.+-.. -+.+.+...+.....+.-+|+|-|+...
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~ 142 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQ 142 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCH
Confidence 33344455569999998533 2233444444455667789999998644
No 286
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.49 E-value=0.86 Score=45.07 Aligned_cols=78 Identities=22% Similarity=0.265 Sum_probs=43.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc-CHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
+|+||||++.+++.....+..-..+..|+..... ...+.++...+.++.+.....+.......++.+. ..=+|++|.
T Consensus 203 tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~--~~d~vliDt 280 (282)
T TIGR03499 203 TGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR--DKDLILIDT 280 (282)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc--CCCEEEEeC
Confidence 6999999999999888654111245666654321 2334444445555554332233333444444443 245777775
Q ss_pred C
Q 048755 81 I 81 (674)
Q Consensus 81 v 81 (674)
.
T Consensus 281 ~ 281 (282)
T TIGR03499 281 A 281 (282)
T ss_pred C
Confidence 4
No 287
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=91.40 E-value=0.6 Score=48.72 Aligned_cols=82 Identities=22% Similarity=0.298 Sum_probs=51.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-cCHHHHHHHHHHHhCCC-------CcccchH------HHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLK-------IDEESET------VRAWRLLEQ 67 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~~~~~ 67 (674)
+|+|||+|+.++....... +-+.++++-+... ..+.++.+++...=... ..+++.. ..+..+.++
T Consensus 147 ~G~GKt~l~~~~~~~~~~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEy 225 (449)
T TIGR03305 147 AGVGKTVLLTEMIHNMVGQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAEY 225 (449)
T ss_pred CCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999998886533 2357778877644 35666777766432111 1111111 122345556
Q ss_pred HH--cCCcEEEEEeCCCCc
Q 048755 68 LK--KETKILIILDDIWGS 84 (674)
Q Consensus 68 l~--~~kr~LlVlDdv~~~ 84 (674)
.. +|+++|+++||+...
T Consensus 226 frd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 226 FRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHhcCCceEEEecChHHH
Confidence 55 379999999998643
No 288
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=91.22 E-value=0.99 Score=47.44 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=50.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-cCHHHHHHHHHHHhCCCC-------cccchH------HHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLKI-------DEESET------VRAWRLLEQ 67 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~------~~~~~~~~~ 67 (674)
+|+|||||+.+++...... +-+.++++-+.+. ..+.++.+++...-.... .+++.. ..+..+.++
T Consensus 152 ~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAEy 230 (461)
T PRK12597 152 AGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAEY 230 (461)
T ss_pred CCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999887754 3466777766543 456667776654422111 111111 122344555
Q ss_pred HH-c-CCcEEEEEeCCCC
Q 048755 68 LK-K-ETKILIILDDIWG 83 (674)
Q Consensus 68 l~-~-~kr~LlVlDdv~~ 83 (674)
+. + |+.+|+++||+..
T Consensus 231 frd~~G~~VLl~~DslTR 248 (461)
T PRK12597 231 LRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHhcCCceEEEeccchH
Confidence 54 2 7999999999854
No 289
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.21 E-value=1.2 Score=42.75 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=27.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREI 44 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 44 (674)
+|+|||++|.+++.....+ -..++||+... +++++.+++
T Consensus 30 pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 30 PGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHH
Confidence 6999999999987765433 34678877654 566666654
No 290
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.20 E-value=0.7 Score=42.78 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=22.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccC--------ceEEEEEecCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLF--------EKVISSRVSQT 34 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F--------~~~~wv~~~~~ 34 (674)
+|+||||++..++.+......| ..+.|++....
T Consensus 41 ~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 41 PGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp STSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 7999999999999887753333 25888877665
No 291
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.00 E-value=0.76 Score=48.79 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=44.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-cCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
+|+||||++.+++.....+.....+..++.... ....+.++...+.++.......+.......++.+. +.=+||+|.
T Consensus 359 tGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~--~~DLVLIDT 436 (559)
T PRK12727 359 TGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR--DYKLVLIDT 436 (559)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc--cCCEEEecC
Confidence 699999999999987765422234555554321 12334444444555544333333333444555443 355888888
Q ss_pred CC
Q 048755 81 IW 82 (674)
Q Consensus 81 v~ 82 (674)
..
T Consensus 437 aG 438 (559)
T PRK12727 437 AG 438 (559)
T ss_pred CC
Confidence 74
No 292
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=90.92 E-value=0.99 Score=41.48 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=26.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE 43 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 43 (674)
+|+|||++|.+++.....+ =..++|++... +.+++.+.
T Consensus 8 ~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 8 PGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 7999999999998876643 13577876643 45555544
No 293
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.46 E-value=1.4 Score=44.95 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=45.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-cCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcC-CcEEEEEe
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKE-TKILIILD 79 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~-kr~LlVlD 79 (674)
+|+||||++.+++.....+. + .+..++.... ....+-++..++.++.+.....+.......+..+... +.=++++|
T Consensus 250 tGvGKTTTiaKLA~~L~~~G-k-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLID 327 (436)
T PRK11889 250 TGVGKTTTLAKMAWQFHGKK-K-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILID 327 (436)
T ss_pred CCCcHHHHHHHHHHHHHHcC-C-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 79999999999998776442 2 3555555432 2344445555666665543333333344444444421 23477888
Q ss_pred CCCC
Q 048755 80 DIWG 83 (674)
Q Consensus 80 dv~~ 83 (674)
-...
T Consensus 328 TaGR 331 (436)
T PRK11889 328 TAGK 331 (436)
T ss_pred Cccc
Confidence 7643
No 294
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.28 E-value=1.2 Score=45.91 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=48.1
Q ss_pred CCCcHHHHHHHHHHhhhhcc--cCceEEEEEecCC-cCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENN--LFEKVISSRVSQT-PQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIIL 78 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~--~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVl 78 (674)
.|+||||.+.+++....... .=..+.-|++... ....+.++..++.++.+.............+..+ .+.=++++
T Consensus 183 tGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~--~~~DlVLI 260 (388)
T PRK12723 183 TGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS--KDFDLVLV 260 (388)
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh--CCCCEEEE
Confidence 69999999999998876431 1124555555432 2344447777777777644333333333333333 24668999
Q ss_pred eCCCC
Q 048755 79 DDIWG 83 (674)
Q Consensus 79 Ddv~~ 83 (674)
|.+..
T Consensus 261 DTaGr 265 (388)
T PRK12723 261 DTIGK 265 (388)
T ss_pred cCCCC
Confidence 98753
No 295
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=90.27 E-value=1.4 Score=47.72 Aligned_cols=123 Identities=23% Similarity=0.248 Sum_probs=66.7
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.+|.|||.||+++++..... |-.+.+-+. .. ..-++. ......+.....+..++.|++|+
T Consensus 284 pPGtGKT~lAkava~~~~~~--fi~v~~~~l-------------~s----k~vGes-ek~ir~~F~~A~~~~p~iiFiDE 343 (494)
T COG0464 284 PPGTGKTLLAKAVALESRSR--FISVKGSEL-------------LS----KWVGES-EKNIRELFEKARKLAPSIIFIDE 343 (494)
T ss_pred CCCCCHHHHHHHHHhhCCCe--EEEeeCHHH-------------hc----cccchH-HHHHHHHHHHHHcCCCcEEEEEc
Confidence 47999999999999966644 533222111 00 000111 12233444444456799999999
Q ss_pred CCCccc-------------hhhccCCcC--CCCCCeEEEEEeCChhhhh----ccCCCcceEecCCCCHHHHHHHHHHHh
Q 048755 81 IWGSLD-------------LEAIGIPVA--DDNGGCKVLLTARSQDVLS----CKMDCQQNFVVDVLNEKEAWSLFKKMT 141 (674)
Q Consensus 81 v~~~~~-------------~~~l~~~~~--~~~~gs~ilvTtr~~~~~~----~~~~~~~~~~l~~L~~~~~~~lf~~~~ 141 (674)
++..-. ...+...+. ....+-.||-||-.+.... +..+-...+.++.-+.++..++|..+.
T Consensus 344 iDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~ 423 (494)
T COG0464 344 IDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHL 423 (494)
T ss_pred hhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHh
Confidence 864311 122222222 1222333444444333321 111335578889999999999999988
Q ss_pred CC
Q 048755 142 GD 143 (674)
Q Consensus 142 ~~ 143 (674)
.+
T Consensus 424 ~~ 425 (494)
T COG0464 424 RD 425 (494)
T ss_pred cc
Confidence 63
No 296
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=90.25 E-value=1.1 Score=40.34 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=40.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcC-CcEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKE-TKILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~-kr~LlVlDd 80 (674)
.|+|||++|.+++... ...++++.-.+.++. ++.+.|.+............+....+.+.+... +.-.+++|.
T Consensus 8 ~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 8 ARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred CCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 5899999999998651 235667666666654 466666554333322222122222333333221 233799998
Q ss_pred C
Q 048755 81 I 81 (674)
Q Consensus 81 v 81 (674)
+
T Consensus 82 l 82 (169)
T cd00544 82 L 82 (169)
T ss_pred H
Confidence 6
No 297
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.20 E-value=1 Score=43.05 Aligned_cols=109 Identities=19% Similarity=0.163 Sum_probs=58.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC-----CcCHHHHHHHHHHHhCCCCc------cc-chHHHHHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-----TPQIKEIQREIAEKLGLKID------EE-SETVRAWRLLEQLK 69 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~------~~-~~~~~~~~~~~~l~ 69 (674)
+|+||||+++.+..-.... . +.++..-.+ .....+...++++.++.... ++ .-.+.+.-.+.+.+
T Consensus 48 SG~GKSTlgr~i~~L~~pt--~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARAL 124 (268)
T COG4608 48 SGCGKSTLGRLILGLEEPT--S-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARAL 124 (268)
T ss_pred CCCCHHHHHHHHHcCcCCC--C-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHH
Confidence 6999999999999876644 2 233322111 22344556677777775532 11 11122222333333
Q ss_pred cCCcEEEEEeCCCCc------cchhhccCCcCCCCCCeEEEEEeCChhhhh
Q 048755 70 KETKILIILDDIWGS------LDLEAIGIPVADDNGGCKVLLTARSQDVLS 114 (674)
Q Consensus 70 ~~kr~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~ 114 (674)
.-++=++|.|+.-.. .+.-.+...+ ....|-..+..|.+-.++.
T Consensus 125 al~P~liV~DEpvSaLDvSiqaqIlnLL~dl-q~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 125 ALNPKLIVADEPVSALDVSVQAQILNLLKDL-QEELGLTYLFISHDLSVVR 174 (268)
T ss_pred hhCCcEEEecCchhhcchhHHHHHHHHHHHH-HHHhCCeEEEEEEEHHhhh
Confidence 457899999975433 2222222222 1223555777777766654
No 298
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=90.20 E-value=1.3 Score=42.24 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=27.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEI 40 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 40 (674)
||+||||+|..++.....++ + .+.-|+.....+....
T Consensus 11 GGvGKTT~a~nLA~~la~~G-~-~VlliD~DpQ~s~~~w 47 (231)
T PRK13849 11 GGAGKTTALMGLCAALASDG-K-RVALFEADENRPLTRW 47 (231)
T ss_pred CCccHHHHHHHHHHHHHhCC-C-cEEEEeCCCCCCHHHH
Confidence 89999999999999887653 2 4666777665554443
No 299
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=90.19 E-value=0.38 Score=42.33 Aligned_cols=29 Identities=31% Similarity=0.264 Sum_probs=22.1
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEe
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRV 31 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~ 31 (674)
++|+||||||+++..+.... -..++.++.
T Consensus 10 lsGsGKtTlA~~L~~~L~~~--g~~~~~LDg 38 (156)
T PF01583_consen 10 LSGSGKTTLARALERRLFAR--GIKVYLLDG 38 (156)
T ss_dssp STTSSHHHHHHHHHHHHHHT--TS-EEEEEH
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCcEEEecC
Confidence 47999999999999999876 344565544
No 300
>PRK06217 hypothetical protein; Validated
Probab=90.19 E-value=0.95 Score=41.50 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=20.6
Q ss_pred CCCCcHHHHHHHHHHhhhhcccC--ceEEEE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLF--EKVISS 29 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F--~~~~wv 29 (674)
.+|+||||+|++++...... +| |..+|.
T Consensus 9 ~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~ 38 (183)
T PRK06217 9 ASGSGTTTLGAALAERLDIP-HLDTDDYFWL 38 (183)
T ss_pred CCCCCHHHHHHHHHHHcCCc-EEEcCceeec
Confidence 37999999999999886543 23 446663
No 301
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.17 E-value=2.1 Score=41.84 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=17.6
Q ss_pred CCCCcHHHHHHHHHHhhhhc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~ 20 (674)
.+|.|||+|+++++....++
T Consensus 185 PPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 185 PPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred CCCCChhHHHHHHHHhheee
Confidence 37999999999999988765
No 302
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=90.11 E-value=0.21 Score=42.64 Aligned_cols=17 Identities=41% Similarity=0.651 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHHhh
Q 048755 1 MGGIGKTTLVKEVGRQA 17 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~ 17 (674)
+.|+||||+|+++..+.
T Consensus 6 ~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 6 IPGSGKTTIAKELAERL 22 (129)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999985
No 303
>PRK11823 DNA repair protein RadA; Provisional
Probab=90.02 E-value=0.73 Score=48.82 Aligned_cols=76 Identities=28% Similarity=0.346 Sum_probs=43.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCccc--chHHHHHHHHHHHHcCCcEEEEEe
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEE--SETVRAWRLLEQLKKETKILIILD 79 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~~kr~LlVlD 79 (674)
+|+|||||+.+++.....+ -..++|++..+ +..++.+ -++.++...+.. ........+.+.+...+.-++|+|
T Consensus 89 pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ee--s~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lVVID 163 (446)
T PRK11823 89 PGIGKSTLLLQVAARLAAA--GGKVLYVSGEE--SASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEEEKPDLVVID 163 (446)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEEccc--cHHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEEEEe
Confidence 6999999999999887643 23578877643 3333322 255555432110 001113344444444456678888
Q ss_pred CCC
Q 048755 80 DIW 82 (674)
Q Consensus 80 dv~ 82 (674)
.+.
T Consensus 164 SIq 166 (446)
T PRK11823 164 SIQ 166 (446)
T ss_pred chh
Confidence 874
No 304
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=90.01 E-value=1.1 Score=46.92 Aligned_cols=81 Identities=19% Similarity=0.307 Sum_probs=49.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-cCHHHHHHHHHHHhCCCC-------cccchHH------HHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLKI-------DEESETV------RAWRLLEQ 67 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~------~~~~~~~~ 67 (674)
+|+|||||+.+++........ +.++++-+.+. ..+.++.+++...=.... .+.+... .+..+.++
T Consensus 153 ~GvGKt~Ll~~i~~~~~~~~~-~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEy 231 (463)
T PRK09280 153 AGVGKTVLIQELINNIAKEHG-GYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAEY 231 (463)
T ss_pred CCCChhHHHHHHHHHHHhcCC-CEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 699999999999887765421 34666666543 456677777765422211 1111111 12334455
Q ss_pred HH--cCCcEEEEEeCCCC
Q 048755 68 LK--KETKILIILDDIWG 83 (674)
Q Consensus 68 l~--~~kr~LlVlDdv~~ 83 (674)
.. +|+.+||++||+..
T Consensus 232 frd~~G~~VLll~DslTR 249 (463)
T PRK09280 232 FRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHhcCCceEEEecchHH
Confidence 52 57999999999854
No 305
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=89.90 E-value=1 Score=46.89 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=49.6
Q ss_pred CCCcHHHHHHHHHHhhhh------c------ccCceEEEEEecCCcCHHHHHHHHHHHhC-CCC-------cccchHH--
Q 048755 2 GGIGKTTLVKEVGRQAKE------N------NLFEKVISSRVSQTPQIKEIQREIAEKLG-LKI-------DEESETV-- 59 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~------~------~~F~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~-------~~~~~~~-- 59 (674)
+|+|||||+.+++++... . +.| .++++-+.+.....+.+.+.+..-+ ... .+++...
T Consensus 150 sGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~-v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p~~~R~ 228 (466)
T TIGR01040 150 AGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNF-AIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERI 228 (466)
T ss_pred CCCCHHHHHHHHHHhhccccccccccccccCCce-EEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 599999999999987651 1 111 4566666666666666666665544 221 1111111
Q ss_pred ----HHHHHHHHHH--cCCcEEEEEeCCCC
Q 048755 60 ----RAWRLLEQLK--KETKILIILDDIWG 83 (674)
Q Consensus 60 ----~~~~~~~~l~--~~kr~LlVlDdv~~ 83 (674)
.+..+.++.. +|+++|+++||+..
T Consensus 229 ~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 229 ITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred HHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 1234556665 47999999999854
No 306
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=89.89 E-value=2.4 Score=42.35 Aligned_cols=76 Identities=22% Similarity=0.208 Sum_probs=43.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcc-----cchHHHHHHHHHHHH-cCCcEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDE-----ESETVRAWRLLEQLK-KETKIL 75 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~l~-~~kr~L 75 (674)
.|+||||||..+....... -..++||+....+++. .++.++.+.+. .+..+.+..+.+.+. .+.--+
T Consensus 62 ~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~l 134 (322)
T PF00154_consen 62 ESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDL 134 (322)
T ss_dssp TTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESE
T ss_pred CCCchhhhHHHHHHhhhcc--cceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccE
Confidence 4789999999998877654 3469999997776653 34555554321 122233334555543 445568
Q ss_pred EEEeCCCCc
Q 048755 76 IILDDIWGS 84 (674)
Q Consensus 76 lVlDdv~~~ 84 (674)
+|+|.|...
T Consensus 135 VVvDSv~al 143 (322)
T PF00154_consen 135 VVVDSVAAL 143 (322)
T ss_dssp EEEE-CTT-
T ss_pred EEEecCccc
Confidence 999998543
No 307
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.84 E-value=1.8 Score=44.07 Aligned_cols=80 Identities=19% Similarity=0.166 Sum_probs=49.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc-CHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHc-CCcEEEEEe
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKK-ETKILIILD 79 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~kr~LlVlD 79 (674)
.|+||||++..++.....+. ..+.+|+..... ...+-++..++.++.+.....+.......++.+.. +..=++++|
T Consensus 215 tGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLID 292 (407)
T PRK12726 215 TGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILID 292 (407)
T ss_pred CCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 59999999999998765442 357777765332 34556777777777654333333334444555542 335678889
Q ss_pred CCCC
Q 048755 80 DIWG 83 (674)
Q Consensus 80 dv~~ 83 (674)
-...
T Consensus 293 TAGr 296 (407)
T PRK12726 293 TVGR 296 (407)
T ss_pred CCCC
Confidence 7743
No 308
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.81 E-value=0.38 Score=44.79 Aligned_cols=99 Identities=12% Similarity=0.087 Sum_probs=49.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHH---HHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQR---EIAEKLGLKIDEESETVRAWRLLEQLKKETKILIIL 78 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVl 78 (674)
.|+||||+++.++...... ..+.++.-.. +. +.... .+..+-.. ..........+...+.. .+=.+++
T Consensus 10 tGSGKTTll~~ll~~~~~~--~~~~i~t~e~-~~--E~~~~~~~~~i~q~~v---g~~~~~~~~~i~~aLr~-~pd~ii~ 80 (198)
T cd01131 10 TGSGKSTTLAAMIDYINKN--KTHHILTIED-PI--EFVHESKRSLINQREV---GLDTLSFENALKAALRQ-DPDVILV 80 (198)
T ss_pred CCCCHHHHHHHHHHHhhhc--CCcEEEEEcC-Cc--cccccCccceeeeccc---CCCccCHHHHHHHHhcC-CcCEEEE
Confidence 5999999999988877643 3333433221 11 11010 11111000 11111122233344443 4669999
Q ss_pred eCCCCccchhhccCCcCCCCCCeEEEEEeCChhh
Q 048755 79 DDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDV 112 (674)
Q Consensus 79 Ddv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~ 112 (674)
|++.+.+.+...... ...|..++.|+.....
T Consensus 81 gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 81 GEMRDLETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred cCCCCHHHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 999877655443222 2235567777776554
No 309
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=89.71 E-value=1.6 Score=41.84 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=27.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREI 44 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 44 (674)
+|+|||++|.+++.....+ =..++|++..+ +.+++.+++
T Consensus 34 ~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~--~~~~~~~~~ 72 (234)
T PRK06067 34 HGTGKSVLSQQFVYGALKQ--GKKVYVITTEN--TSKSYLKQM 72 (234)
T ss_pred CCCChHHHHHHHHHHHHhC--CCEEEEEEcCC--CHHHHHHHH
Confidence 6999999999997654433 23688888854 456666654
No 310
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=89.70 E-value=0.22 Score=44.99 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=25.0
Q ss_pred CCCcHHHHHHHHHHhhhh-cccCceEEEEEecCCcC
Q 048755 2 GGIGKTTLVKEVGRQAKE-NNLFEKVISSRVSQTPQ 36 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~-~~~F~~~~wv~~~~~~~ 36 (674)
.|+|||.+|+.+++.... . ....+-++++.-..
T Consensus 12 sGvGKT~la~~la~~l~~~~--~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 12 SGVGKTELAKALAELLFVGS--ERPLIRIDMSEYSE 45 (171)
T ss_dssp TTSSHHHHHHHHHHHHT-SS--CCEEEEEEGGGHCS
T ss_pred CCCCHHHHHHHHHHHhccCC--ccchHHHhhhcccc
Confidence 699999999999998883 3 45667777765444
No 311
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.68 E-value=1.9 Score=44.12 Aligned_cols=48 Identities=27% Similarity=0.385 Sum_probs=33.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEec-CCcCHHHHHHHHHHHhCCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVS-QTPQIKEIQREIAEKLGLK 51 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~ 51 (674)
=|.||||.|.++++.++.++ + .+.-|.+. ..+...+-+++++++++.+
T Consensus 109 QGsGKTTt~~KLA~~lkk~~-~-kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 109 QGSGKTTTAGKLAKYLKKKG-K-KVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred cCCChHhHHHHHHHHHHHcC-C-ceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 39999999999999998742 2 23333332 2335666788888988765
No 312
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.66 E-value=0.21 Score=45.21 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=17.4
Q ss_pred CCCCcHHHHHHHHHHhhhhc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~ 20 (674)
.+|+||||+|++++...+.+
T Consensus 9 yPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 9 YPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred CCCCCchHHHHHHHHHHHHh
Confidence 47999999999999987755
No 313
>PRK04328 hypothetical protein; Provisional
Probab=89.60 E-value=1.6 Score=42.23 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=27.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLG 49 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 49 (674)
+|+|||++|.+++.+...+ -..++|++... +++++.+. ++.++
T Consensus 32 pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee--~~~~i~~~-~~~~g 74 (249)
T PRK04328 32 PGTGKSIFSQQFLWNGLQM--GEPGVYVALEE--HPVQVRRN-MRQFG 74 (249)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCcEEEEEeeC--CHHHHHHH-HHHcC
Confidence 6999999999987765433 34578877755 44444333 34444
No 314
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=89.51 E-value=1.8 Score=41.01 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
.|+||||+|+.+......
T Consensus 8 sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 8 VAVGKSTTARVLQALLSR 25 (220)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 699999999999998763
No 315
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=89.48 E-value=0.61 Score=40.49 Aligned_cols=70 Identities=21% Similarity=0.260 Sum_probs=39.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||++|+.+++..... +.-+.++...+..++....--. ... ....+.. +.+... +..++|||++
T Consensus 8 ~G~GKt~l~~~la~~~~~~-----~~~i~~~~~~~~~dl~g~~~~~-~~~-~~~~~~~----l~~a~~--~~~il~lDEi 74 (139)
T PF07728_consen 8 PGTGKTTLARELAALLGRP-----VIRINCSSDTTEEDLIGSYDPS-NGQ-FEFKDGP----LVRAMR--KGGILVLDEI 74 (139)
T ss_dssp SSSSHHHHHHHHHHHHTCE-----EEEEE-TTTSTHHHHHCEEET--TTT-TCEEE-C----CCTTHH--EEEEEEESSC
T ss_pred CCCCHHHHHHHHHHHhhcc-----eEEEEeccccccccceeeeeec-ccc-ccccccc----cccccc--ceeEEEECCc
Confidence 6999999999999988322 4456777777777665443211 000 0000000 000111 6899999999
Q ss_pred CCc
Q 048755 82 WGS 84 (674)
Q Consensus 82 ~~~ 84 (674)
...
T Consensus 75 n~a 77 (139)
T PF07728_consen 75 NRA 77 (139)
T ss_dssp GG-
T ss_pred ccC
Confidence 743
No 316
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=89.48 E-value=1.4 Score=46.32 Aligned_cols=83 Identities=19% Similarity=0.248 Sum_probs=49.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCc--eEEEEEecC-CcCHHHHHHHHHHHhCCCC-------cccchH------HHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFE--KVISSRVSQ-TPQIKEIQREIAEKLGLKI-------DEESET------VRAWRLL 65 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~--~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~------~~~~~~~ 65 (674)
.|+|||||+.+++++....+.+. .++.+-+.+ ...+.++.+++...=.... .+.+.. ..+..+.
T Consensus 150 ~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiA 229 (458)
T TIGR01041 150 SGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTAA 229 (458)
T ss_pred CCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 59999999999998776432222 345555554 3356666666654322211 111111 1223455
Q ss_pred HHHH--cCCcEEEEEeCCCCc
Q 048755 66 EQLK--KETKILIILDDIWGS 84 (674)
Q Consensus 66 ~~l~--~~kr~LlVlDdv~~~ 84 (674)
++.. +|+++|+++||+...
T Consensus 230 Eyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 230 EYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHccCCcEEEEEcChhHH
Confidence 6665 589999999998643
No 317
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=89.48 E-value=1.9 Score=45.09 Aligned_cols=81 Identities=22% Similarity=0.192 Sum_probs=43.0
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc-CHHHHHHHHHHHhCCCCcc----cchHHHHHHHHHHHHcCCcEE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKIDE----ESETVRAWRLLEQLKKETKIL 75 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~~l~~~kr~L 75 (674)
.+|+||||.|.+++.....+..+ .+.-|++.... ...+.++..++.++.+... ......+....+.....+.=+
T Consensus 107 ~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~~Dv 185 (428)
T TIGR00959 107 LQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENGFDV 185 (428)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 37999999999999886533222 34445553221 2344455556666544221 122233334444443322237
Q ss_pred EEEeCCC
Q 048755 76 IILDDIW 82 (674)
Q Consensus 76 lVlDdv~ 82 (674)
+|+|-..
T Consensus 186 VIIDTaG 192 (428)
T TIGR00959 186 VIVDTAG 192 (428)
T ss_pred EEEeCCC
Confidence 8888664
No 318
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.48 E-value=0.27 Score=42.72 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=18.7
Q ss_pred CCCCcHHHHHHHHHHhhhhcc
Q 048755 1 MGGIGKTTLVKEVGRQAKENN 21 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~ 21 (674)
|+|+||||+++++++..+.+.
T Consensus 13 ~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 13 RPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred CCCccHHHHHHHHHHHHHhcC
Confidence 689999999999999888763
No 319
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=89.36 E-value=2.2 Score=41.86 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=43.6
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc-CHHHHHHHHHHHhCCCCc----ccchHHHHHHHHHHHHcCCcEE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKID----EESETVRAWRLLEQLKKETKIL 75 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~~l~~~kr~L 75 (674)
.+|+||||++.+++...... -..+..++..... ...+-++..++..+.... ..+.........+....+..=+
T Consensus 80 ~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ 157 (272)
T TIGR00064 80 VNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDV 157 (272)
T ss_pred CCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCE
Confidence 47999999999999887644 2356677654321 223444445566554321 1111122222233333334567
Q ss_pred EEEeCCC
Q 048755 76 IILDDIW 82 (674)
Q Consensus 76 lVlDdv~ 82 (674)
+|+|-..
T Consensus 158 ViIDT~G 164 (272)
T TIGR00064 158 VLIDTAG 164 (272)
T ss_pred EEEeCCC
Confidence 8889764
No 320
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.34 E-value=1.2 Score=46.07 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=40.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-cCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
+|+||||+|.+++........+ .+.-++.... ....+.++..++.++.+..... ....+.+.+...+.=++|+|-
T Consensus 232 tGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~---~~~~l~~~l~~~~~D~VLIDT 307 (432)
T PRK12724 232 TGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK---DIKKFKETLARDGSELILIDT 307 (432)
T ss_pred CCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehH---HHHHHHHHHHhCCCCEEEEeC
Confidence 7999999999999876433222 2333443221 1234445555566655432221 123344444333344688994
Q ss_pred C
Q 048755 81 I 81 (674)
Q Consensus 81 v 81 (674)
.
T Consensus 308 a 308 (432)
T PRK12724 308 A 308 (432)
T ss_pred C
Confidence 3
No 321
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=89.31 E-value=0.46 Score=41.36 Aligned_cols=39 Identities=28% Similarity=0.463 Sum_probs=29.3
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCC
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKI 52 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 52 (674)
.+|+||||+|+.++++..-. | | +.-.+.++|++..+.+.
T Consensus 8 ~pGsG~TTva~~lAe~~gl~--~-----v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 8 LPGSGKTTVARELAEHLGLK--L-----V------SAGTIFREMARERGMSL 46 (179)
T ss_pred CCCCChhHHHHHHHHHhCCc--e-----e------eccHHHHHHHHHcCCCH
Confidence 37999999999999988755 2 1 23356788888887763
No 322
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=89.25 E-value=0.58 Score=42.48 Aligned_cols=17 Identities=35% Similarity=0.603 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
+|+||||+|+.+++...
T Consensus 9 pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 9 PGAGKSTLAKKLAKKLG 25 (178)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 79999999999999854
No 323
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.22 E-value=0.69 Score=49.05 Aligned_cols=61 Identities=23% Similarity=0.376 Sum_probs=39.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|.|||.||++++++..+- | +.++-+ +|...+ .+ .....+.++.+.....-++++++|++
T Consensus 232 PGCGKT~lA~AiAgel~vP--f-----~~isAp--------eivSGv----SG-ESEkkiRelF~~A~~~aPcivFiDeI 291 (802)
T KOG0733|consen 232 PGCGKTSLANAIAGELGVP--F-----LSISAP--------EIVSGV----SG-ESEKKIRELFDQAKSNAPCIVFIDEI 291 (802)
T ss_pred CCccHHHHHHHHhhhcCCc--e-----Eeecch--------hhhccc----Cc-ccHHHHHHHHHHHhccCCeEEEeecc
Confidence 7999999999999998866 4 222211 122221 11 22334556666666668999999998
Q ss_pred C
Q 048755 82 W 82 (674)
Q Consensus 82 ~ 82 (674)
+
T Consensus 292 D 292 (802)
T KOG0733|consen 292 D 292 (802)
T ss_pred c
Confidence 6
No 324
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=89.11 E-value=1.5 Score=40.06 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
++|+||||+|+.++....
T Consensus 7 ~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 7 GPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999988664
No 325
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.11 E-value=2 Score=43.71 Aligned_cols=77 Identities=22% Similarity=0.406 Sum_probs=49.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEec-CCcCHHHHHHHHHHHhCCCCc-------ccchHH------HHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVS-QTPQIKEIQREIAEKLGLKID-------EESETV------RAWRLLEQ 67 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~-------~~~~~~------~~~~~~~~ 67 (674)
+|+|||||.-++++... +|.++-.=+. +...+.++.++.+..-+.... +++... .+..+.++
T Consensus 172 sGVGKStLLgMiar~t~----aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAEy 247 (441)
T COG1157 172 SGVGKSTLLGMIARNTE----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAEY 247 (441)
T ss_pred CCCcHHHHHHHHhcccc----CCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999998655 5554433333 445678888877766544321 222222 22344555
Q ss_pred HH-cCCcEEEEEeCCC
Q 048755 68 LK-KETKILIILDDIW 82 (674)
Q Consensus 68 l~-~~kr~LlVlDdv~ 82 (674)
.. +||++|+++|.+.
T Consensus 248 FRDqG~~VLL~mDSlT 263 (441)
T COG1157 248 FRDQGKRVLLIMDSLT 263 (441)
T ss_pred HHhCCCeEEEEeecHH
Confidence 54 5899999999984
No 326
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.99 E-value=0.55 Score=52.95 Aligned_cols=73 Identities=15% Similarity=0.208 Sum_probs=39.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||++|+.++..... ..+.++++...... .+.+-++.+....+. .....+.+.+......+|+||++
T Consensus 497 ~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~----~~~~LiG~~~gyvg~-~~~g~L~~~v~~~p~sVlllDEi 566 (758)
T PRK11034 497 TGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERH----TVSRLIGAPPGYVGF-DQGGLLTDAVIKHPHAVLLLDEI 566 (758)
T ss_pred CCCCHHHHHHHHHHHhCC-----CcEEeechhhcccc----cHHHHcCCCCCcccc-cccchHHHHHHhCCCcEEEeccH
Confidence 699999999999987742 23455655432211 122223332211110 01112233344445579999999
Q ss_pred CCc
Q 048755 82 WGS 84 (674)
Q Consensus 82 ~~~ 84 (674)
+..
T Consensus 567 eka 569 (758)
T PRK11034 567 EKA 569 (758)
T ss_pred hhh
Confidence 865
No 327
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=88.96 E-value=1.4 Score=49.33 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=47.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcc-----cchHHHHHHHHHH-HHcCCcEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDE-----ESETVRAWRLLEQ-LKKETKIL 75 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~-l~~~kr~L 75 (674)
.|+||||||.+++...... =..++||+....++. ..+++++.+.+. ....+.+..+... +..++--+
T Consensus 69 ~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~L 141 (790)
T PRK09519 69 ESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDI 141 (790)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeE
Confidence 6999999998877655433 245899988777764 367777765321 1122223333333 34456779
Q ss_pred EEEeCCC
Q 048755 76 IILDDIW 82 (674)
Q Consensus 76 lVlDdv~ 82 (674)
+|+|.+.
T Consensus 142 VVIDSI~ 148 (790)
T PRK09519 142 VVIDSVA 148 (790)
T ss_pred EEEcchh
Confidence 9999875
No 328
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=88.86 E-value=1.2 Score=40.61 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
.|.|||||++.++....
T Consensus 37 nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 37 SGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCCHHHHHHHHhccCC
Confidence 59999999999998654
No 329
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=88.84 E-value=1.5 Score=45.94 Aligned_cols=78 Identities=28% Similarity=0.324 Sum_probs=45.2
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-cCHHHHHHHHHHHhCCCCccc----chHHHHHHHHHHHHcCCcEE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLKIDEE----SETVRAWRLLEQLKKETKIL 75 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~~l~~~kr~L 75 (674)
..|+||||+|.+++.....+. + .+.-|++... ....+.++.++++++.+.... .....+...++.... .=+
T Consensus 103 ~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~~--~Dv 178 (437)
T PRK00771 103 LQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKK--ADV 178 (437)
T ss_pred CCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhhc--CCE
Confidence 379999999999998887542 2 3444544321 234566777777776543221 112223333444432 256
Q ss_pred EEEeCCC
Q 048755 76 IILDDIW 82 (674)
Q Consensus 76 lVlDdv~ 82 (674)
+|+|...
T Consensus 179 VIIDTAG 185 (437)
T PRK00771 179 IIVDTAG 185 (437)
T ss_pred EEEECCC
Confidence 8888763
No 330
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=88.81 E-value=1.7 Score=42.18 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=43.2
Q ss_pred CCCcHHHHH-HHHHHhhhhcccCceE-EEEEecCC-cCHHHHHHHHHHHhCCC-------CcccchHH------HHHHHH
Q 048755 2 GGIGKTTLV-KEVGRQAKENNLFEKV-ISSRVSQT-PQIKEIQREIAEKLGLK-------IDEESETV------RAWRLL 65 (674)
Q Consensus 2 gGiGKTtla-~~~~~~~~~~~~F~~~-~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~------~~~~~~ 65 (674)
.|+|||+|| ..+++... -+.+ +++-+.+. ..+.++.+++.+.-... ..+++... .+..+.
T Consensus 78 ~g~GKt~L~l~~i~~~~~----~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiA 153 (274)
T cd01132 78 RQTGKTAIAIDTIINQKG----KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMG 153 (274)
T ss_pred CCCCccHHHHHHHHHhcC----CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHH
Confidence 479999996 66766532 2333 55555544 45666777666432111 11111111 122333
Q ss_pred HHHH-cCCcEEEEEeCCCCc
Q 048755 66 EQLK-KETKILIILDDIWGS 84 (674)
Q Consensus 66 ~~l~-~~kr~LlVlDdv~~~ 84 (674)
+++. .|+.+|+|+||+...
T Consensus 154 E~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 154 EYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHCCCCEEEEEcChHHH
Confidence 3333 479999999999654
No 331
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=88.77 E-value=1.4 Score=40.35 Aligned_cols=107 Identities=23% Similarity=0.199 Sum_probs=53.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEE---ecCCcCHHHH------HHHHHHHhCCCCc------ccchHHH-HHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSR---VSQTPQIKEI------QREIAEKLGLKID------EESETVR-AWRLL 65 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~---~~~~~~~~~~------~~~i~~~l~~~~~------~~~~~~~-~~~~~ 65 (674)
.|.|||||++.++..... ..+.++++ +.. .+.... ..++++.++.... .-+..+. ...+.
T Consensus 34 nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~la 109 (180)
T cd03214 34 NGAGKSTLLKTLAGLLKP---SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLA 109 (180)
T ss_pred CCCCHHHHHHHHhCCCCC---CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHH
Confidence 599999999999986543 23444432 221 122222 1224555554321 1111111 22344
Q ss_pred HHHHcCCcEEEEEeCCCCccc---hhhccCCcCCC-CC-CeEEEEEeCChhhh
Q 048755 66 EQLKKETKILIILDDIWGSLD---LEAIGIPVADD-NG-GCKVLLTARSQDVL 113 (674)
Q Consensus 66 ~~l~~~kr~LlVlDdv~~~~~---~~~l~~~~~~~-~~-gs~ilvTtr~~~~~ 113 (674)
..+.. .+=++++|+....-+ .+.+...+... .. |..||++|.+....
T Consensus 110 ral~~-~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 110 RALAQ-EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45554 688999998754322 22222222111 12 56788888876654
No 332
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=88.76 E-value=1.2 Score=46.30 Aligned_cols=79 Identities=20% Similarity=0.338 Sum_probs=45.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc-CHHHHHHHHHHHhCCCC-------cccchHH------HHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKI-------DEESETV------RAWRLLEQ 67 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~------~~~~~~~~ 67 (674)
.|+|||||++.++.... .+.++.+-+.+.. .+.++.++++..-+... .+++... .+..+.++
T Consensus 171 sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEy 246 (444)
T PRK08972 171 SGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAEY 246 (444)
T ss_pred CCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999986443 2455555565443 45666666544422211 1111111 12223344
Q ss_pred HH-cCCcEEEEEeCCCCc
Q 048755 68 LK-KETKILIILDDIWGS 84 (674)
Q Consensus 68 l~-~~kr~LlVlDdv~~~ 84 (674)
.. .|+++|+++||+...
T Consensus 247 frd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 247 FRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHcCCCEEEEEcChHHH
Confidence 42 579999999998643
No 333
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=88.72 E-value=1.2 Score=47.19 Aligned_cols=76 Identities=25% Similarity=0.305 Sum_probs=41.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCccc--chHHHHHHHHHHHHcCCcEEEEEe
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEE--SETVRAWRLLEQLKKETKILIILD 79 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~~kr~LlVlD 79 (674)
+|+|||||+.+++.+..... ..++|++.-+ +..++.. -++.++...+.. ........+.+.+.+.+.-++|+|
T Consensus 103 pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EE--s~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~~vVID 177 (454)
T TIGR00416 103 PGIGKSTLLLQVACQLAKNQ--MKVLYVSGEE--SLQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIEEENPQACVID 177 (454)
T ss_pred CCCCHHHHHHHHHHHHHhcC--CcEEEEECcC--CHHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCcEEEEe
Confidence 69999999999988776442 3577876643 3333222 233444332110 001122344444444456678888
Q ss_pred CCC
Q 048755 80 DIW 82 (674)
Q Consensus 80 dv~ 82 (674)
.+.
T Consensus 178 SIq 180 (454)
T TIGR00416 178 SIQ 180 (454)
T ss_pred cch
Confidence 874
No 334
>PRK14974 cell division protein FtsY; Provisional
Probab=88.72 E-value=2.1 Score=43.28 Aligned_cols=82 Identities=24% Similarity=0.292 Sum_probs=44.9
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-cCHHHHHHHHHHHhCCCCcc----cchHHHHHHHHHHHHcCCcEE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLKIDE----ESETVRAWRLLEQLKKETKIL 75 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~~l~~~kr~L 75 (674)
+.|+||||++.+++...... .+ .++.++.... ....+.++..++.++.+... .+....+....+.......=+
T Consensus 148 ~~GvGKTTtiakLA~~l~~~-g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~Dv 225 (336)
T PRK14974 148 VNGTGKTTTIAKLAYYLKKN-GF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDV 225 (336)
T ss_pred CCCCCHHHHHHHHHHHHHHc-CC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCCE
Confidence 47999999999999877654 23 3444543211 23344566677777754321 111122223333322222338
Q ss_pred EEEeCCCCc
Q 048755 76 IILDDIWGS 84 (674)
Q Consensus 76 lVlDdv~~~ 84 (674)
+++|.+...
T Consensus 226 VLIDTaGr~ 234 (336)
T PRK14974 226 VLIDTAGRM 234 (336)
T ss_pred EEEECCCcc
Confidence 999987543
No 335
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=88.65 E-value=1.6 Score=45.56 Aligned_cols=82 Identities=17% Similarity=0.285 Sum_probs=49.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-cCHHHHHHHHHHHhCCCC-------cccchHH------HHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLKI-------DEESETV------RAWRLLEQ 67 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~------~~~~~~~~ 67 (674)
+|+|||||+.+++....... =+.++++-+.+. ..+.++++++...=.... .+++... .+..+.++
T Consensus 152 ~G~GKt~L~~~~~~~~~~~~-~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEy 230 (461)
T TIGR01039 152 AGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAEY 230 (461)
T ss_pred CCCChHHHHHHHHHHHHhcC-CCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999988766442 235666666543 456777777754321111 1111111 22345555
Q ss_pred HH--cCCcEEEEEeCCCCc
Q 048755 68 LK--KETKILIILDDIWGS 84 (674)
Q Consensus 68 l~--~~kr~LlVlDdv~~~ 84 (674)
.. +|+.+|+++||+...
T Consensus 231 frd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 231 FRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHhcCCeeEEEecchhHH
Confidence 54 378999999998654
No 336
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.65 E-value=6.4 Score=43.40 Aligned_cols=62 Identities=23% Similarity=0.299 Sum_probs=40.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|.|||-+|++|+-...-. |++|..+ +++..- + ++. .+.+.++.++.+..++|.|.||++
T Consensus 714 PGTGKTLlAKAVATEcsL~-------FlSVKGP----ELLNMY---V-----GqS-E~NVR~VFerAR~A~PCVIFFDEL 773 (953)
T KOG0736|consen 714 PGTGKTLLAKAVATECSLN-------FLSVKGP----ELLNMY---V-----GQS-EENVREVFERARSAAPCVIFFDEL 773 (953)
T ss_pred CCCchHHHHHHHHhhceee-------EEeecCH----HHHHHH---h-----cch-HHHHHHHHHHhhccCCeEEEeccc
Confidence 7999999999999887755 3445332 121111 1 111 334566777777779999999987
Q ss_pred CC
Q 048755 82 WG 83 (674)
Q Consensus 82 ~~ 83 (674)
+.
T Consensus 774 DS 775 (953)
T KOG0736|consen 774 DS 775 (953)
T ss_pred cc
Confidence 64
No 337
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=88.60 E-value=1.4 Score=39.60 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHhh
Q 048755 2 GGIGKTTLVKEVGRQA 17 (674)
Q Consensus 2 gGiGKTtla~~~~~~~ 17 (674)
+|+|||||+++++++.
T Consensus 13 SG~GKsTl~k~L~~~~ 28 (191)
T COG0194 13 SGVGKSTLVKALLEDD 28 (191)
T ss_pred CCCCHHHHHHHHHhhc
Confidence 7999999999999877
No 338
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=88.58 E-value=0.69 Score=40.99 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=17.7
Q ss_pred CCCCcHHHHHHHHHHhhhhc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~ 20 (674)
++|.||||||.+++......
T Consensus 31 LSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 31 LSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 47999999999999988765
No 339
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=88.53 E-value=1.7 Score=39.66 Aligned_cols=109 Identities=20% Similarity=0.181 Sum_probs=59.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC---cCHHHHHHHHH--HHh--CCC--Cc-ccc--hHHHH----HHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT---PQIKEIQREIA--EKL--GLK--ID-EES--ETVRA----WRLL 65 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~--~~l--~~~--~~-~~~--~~~~~----~~~~ 65 (674)
.|-||||.|..++-+...... .|..+.+-+. ......++.+- +.. +.. .. ... +...+ ....
T Consensus 31 ~GkGKtt~a~g~a~ra~g~G~--~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~~~~~a~ 108 (191)
T PRK05986 31 NGKGKSTAAFGMALRAVGHGK--KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAAREGWEEAK 108 (191)
T ss_pred CCCChHHHHHHHHHHHHHCCC--eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHHHHHHHH
Confidence 489999999999988876632 4555555432 23444444320 000 110 00 111 11112 2233
Q ss_pred HHHHcCCcEEEEEeCCCCc-----cchhhccCCcCCCCCCeEEEEEeCChhh
Q 048755 66 EQLKKETKILIILDDIWGS-----LDLEAIGIPVADDNGGCKVLLTARSQDV 112 (674)
Q Consensus 66 ~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~ilvTtr~~~~ 112 (674)
+.+..++-=++|||++-.. -+.+.+...+.....+.-||+|-|+...
T Consensus 109 ~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~ 160 (191)
T PRK05986 109 RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPR 160 (191)
T ss_pred HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 3344555569999998543 2344444445555667789999998644
No 340
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.53 E-value=1.8 Score=46.52 Aligned_cols=76 Identities=20% Similarity=0.184 Sum_probs=44.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcc----------------cchHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDE----------------ESETVRAWRLL 65 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----------------~~~~~~~~~~~ 65 (674)
+|+||||||.+++.....+ =..++++.+ ..+..++.+.. +.++.+... ....+.+..+.
T Consensus 272 ~G~GKt~l~~~f~~~~~~~--ge~~~y~s~--eEs~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~ 346 (484)
T TIGR02655 272 TGTGKTLLVSKFLENACAN--KERAILFAY--EESRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQIIK 346 (484)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEEe--eCCHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccCChHHHHHHHH
Confidence 6999999999999887654 234666554 44566666664 555543211 01133444455
Q ss_pred HHHHcCCcEEEEEeCCC
Q 048755 66 EQLKKETKILIILDDIW 82 (674)
Q Consensus 66 ~~l~~~kr~LlVlDdv~ 82 (674)
+.+...+.-.+|+|.+.
T Consensus 347 ~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 347 SEIADFKPARIAIDSLS 363 (484)
T ss_pred HHHHHcCCCEEEEcCHH
Confidence 55544445567777663
No 341
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=88.52 E-value=1.1 Score=38.54 Aligned_cols=46 Identities=13% Similarity=0.030 Sum_probs=28.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHh
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKL 48 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 48 (674)
.|.|||+.+..+..+.........++|+.-+ ..-.....+.+....
T Consensus 9 ~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~-~~l~~~~~~~~~~~~ 54 (144)
T cd00046 9 TGSGKTLAALLPILELLDSLKGGQVLVLAPT-RELANQVAERLKELF 54 (144)
T ss_pred CCCchhHHHHHHHHHHHhcccCCCEEEEcCc-HHHHHHHHHHHHHHh
Confidence 6999999999998887765445567776433 223333334444333
No 342
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=88.50 E-value=0.64 Score=51.66 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=42.9
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcE-EEEEe
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKI-LIILD 79 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~-LlVlD 79 (674)
..|+|||-||++++...-... +..+-++.|..-. -.++.+-+|.+....+-.+ -.++-+.+.+ ++| +|.||
T Consensus 529 PTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~E----kHsVSrLIGaPPGYVGyee-GG~LTEaVRr-~PySViLlD 600 (786)
T COG0542 529 PTGVGKTELAKALAEALFGDE--QALIRIDMSEYME----KHSVSRLIGAPPGYVGYEE-GGQLTEAVRR-KPYSVILLD 600 (786)
T ss_pred CCcccHHHHHHHHHHHhcCCC--ccceeechHHHHH----HHHHHHHhCCCCCCceecc-ccchhHhhhc-CCCeEEEec
Confidence 369999999999998665331 3345555553221 1234444555543321111 1233344444 566 88899
Q ss_pred CCCCc
Q 048755 80 DIWGS 84 (674)
Q Consensus 80 dv~~~ 84 (674)
+|...
T Consensus 601 EIEKA 605 (786)
T COG0542 601 EIEKA 605 (786)
T ss_pred hhhhc
Confidence 99866
No 343
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.41 E-value=1.9 Score=45.31 Aligned_cols=78 Identities=21% Similarity=0.225 Sum_probs=43.9
Q ss_pred CCCcHHHHHHHHHHhhh-hcccCceEEEEEecCCc-CHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEe
Q 048755 2 GGIGKTTLVKEVGRQAK-ENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILD 79 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~-~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 79 (674)
+|+||||++.+++.... .+. -..+..|+..... ...+.++...+.++.+.............+..+. ..=++|+|
T Consensus 230 tGvGKTTt~~kLA~~~~~~~~-g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~--~~DlVlID 306 (424)
T PRK05703 230 TGVGKTTTLAKLAARYALLYG-KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR--DCDVILID 306 (424)
T ss_pred CCCCHHHHHHHHHHHHHHhcC-CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--CCCEEEEe
Confidence 79999999999998876 222 2356677764422 1233444445555554332222223333333332 35678899
Q ss_pred CCC
Q 048755 80 DIW 82 (674)
Q Consensus 80 dv~ 82 (674)
...
T Consensus 307 t~G 309 (424)
T PRK05703 307 TAG 309 (424)
T ss_pred CCC
Confidence 763
No 344
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=88.36 E-value=0.6 Score=40.96 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=27.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHh
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKL 48 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 48 (674)
-|+||||+|.++.+-+.. +..+---+++.+ ....+.+.+++.+
T Consensus 8 iGCGKTTva~aL~~LFg~---wgHvQnDnI~~k-~~~~f~~~~l~~L 50 (168)
T PF08303_consen 8 IGCGKTTVALALSNLFGE---WGHVQNDNITGK-RKPKFIKAVLELL 50 (168)
T ss_pred CCcCHHHHHHHHHHHcCC---CCccccCCCCCC-CHHHHHHHHHHHH
Confidence 499999999999875431 111111133444 6777777777777
No 345
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=88.34 E-value=1.3 Score=44.71 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=16.7
Q ss_pred CCCCcHHHHHHHHHHhhhh
Q 048755 1 MGGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~ 19 (674)
+.|+||||+++.+++....
T Consensus 7 l~GaGKST~~~~l~~~l~~ 25 (340)
T TIGR03575 7 LPAAGKSTLARSLSATLRR 25 (340)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 5799999999999988764
No 346
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=88.34 E-value=0.24 Score=41.61 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=15.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCce
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEK 25 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~ 25 (674)
.|+||||+|+.++...... |..
T Consensus 8 PG~GKT~la~~lA~~~~~~--f~R 29 (131)
T PF07726_consen 8 PGVGKTTLAKALARSLGLS--FKR 29 (131)
T ss_dssp --HHHHHHHHHHHHHTT----EEE
T ss_pred CccHHHHHHHHHHHHcCCc--eeE
Confidence 6999999999999987765 643
No 347
>PRK10867 signal recognition particle protein; Provisional
Probab=88.25 E-value=2.2 Score=44.68 Aligned_cols=50 Identities=22% Similarity=0.329 Sum_probs=29.2
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc-CHHHHHHHHHHHhCCC
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLK 51 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~ 51 (674)
.+|+||||.|.+++.....+.. ..+.-|++.... ...+-++..++..+.+
T Consensus 108 ~~GsGKTTtaakLA~~l~~~~G-~kV~lV~~D~~R~aa~eQL~~~a~~~gv~ 158 (433)
T PRK10867 108 LQGAGKTTTAGKLAKYLKKKKK-KKVLLVAADVYRPAAIEQLKTLGEQIGVP 158 (433)
T ss_pred CCCCcHHHHHHHHHHHHHHhcC-CcEEEEEccccchHHHHHHHHHHhhcCCe
Confidence 3799999999999987765411 234445543221 2233445556665543
No 348
>PTZ00185 ATPase alpha subunit; Provisional
Probab=87.99 E-value=3.6 Score=43.51 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=44.6
Q ss_pred CCCcHHHHH-HHHHHhhhh-----cccCceEEEEEecCCcCHHHHHHHHHHHhC-CCC-------cccchHH------HH
Q 048755 2 GGIGKTTLV-KEVGRQAKE-----NNLFEKVISSRVSQTPQIKEIQREIAEKLG-LKI-------DEESETV------RA 61 (674)
Q Consensus 2 gGiGKTtla-~~~~~~~~~-----~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~-------~~~~~~~------~~ 61 (674)
.|+|||+|| -.+.|+... .+.-+.++++-+.+..+...-+.+.++.-+ ... .+++... ..
T Consensus 198 ~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~~Apy~a 277 (574)
T PTZ00185 198 RQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYSG 277 (574)
T ss_pred CCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHHHHHHHHH
Confidence 589999997 667777532 122345777777765533222333333333 111 1111111 11
Q ss_pred HHHHHHHH-cCCcEEEEEeCCCCc
Q 048755 62 WRLLEQLK-KETKILIILDDIWGS 84 (674)
Q Consensus 62 ~~~~~~l~-~~kr~LlVlDdv~~~ 84 (674)
..+-+.+. .|+.+|+|+||+..-
T Consensus 278 ~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 278 VTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHcCCCEEEEEcCchHH
Confidence 23333332 579999999998643
No 349
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=87.95 E-value=0.77 Score=42.09 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=26.8
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHH
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAE 46 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 46 (674)
|=|+||||||+.++++.... ++.-.+.+..=.+.+.+++-+
T Consensus 12 ~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 12 MIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhHHH
Confidence 44999999999999998843 333444455444555554433
No 350
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=87.90 E-value=1.5 Score=42.47 Aligned_cols=20 Identities=35% Similarity=0.705 Sum_probs=17.2
Q ss_pred CCCCcHHHHHHHHHHhhhhc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~ 20 (674)
++|+||||+|++++......
T Consensus 7 ~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 7 LPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 47999999999999887643
No 351
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=87.71 E-value=3 Score=43.60 Aligned_cols=79 Identities=16% Similarity=0.332 Sum_probs=44.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-cCHHHHHHHHHHHhCCCC-------cccchHH------HHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLKI-------DEESETV------RAWRLLEQ 67 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~------~~~~~~~~ 67 (674)
.|+|||||++.++..... +.++.+-+.+. ..+.++.++.+..-+... .+++... .+..+.++
T Consensus 167 sG~GKTtLL~~I~~~~~~----d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiAEy 242 (442)
T PRK08927 167 SGVGKSVLLSMLARNADA----DVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAEY 242 (442)
T ss_pred CCCCHHHHHHHHHhccCC----CEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 599999999999876653 34444555443 345566655544322211 1111111 12234444
Q ss_pred HH-cCCcEEEEEeCCCCc
Q 048755 68 LK-KETKILIILDDIWGS 84 (674)
Q Consensus 68 l~-~~kr~LlVlDdv~~~ 84 (674)
+. .|+.+|+++||+...
T Consensus 243 frd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 243 FRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHCCCcEEEEEeCcHHH
Confidence 42 579999999998543
No 352
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=87.67 E-value=1.7 Score=45.87 Aligned_cols=81 Identities=23% Similarity=0.298 Sum_probs=49.5
Q ss_pred CCCcHHHHHHHHHHhhhhc---ccCceEEEEEecCC-cCHHHHHHHHHHHhCCCC-------cccchH------HHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKEN---NLFEKVISSRVSQT-PQIKEIQREIAEKLGLKI-------DEESET------VRAWRL 64 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~---~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~------~~~~~~ 64 (674)
.|+|||+|+..++++.... +.+ .++.+-+.+. ..+.++++++...=.... .+++.. ..+..+
T Consensus 152 ~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~ti 230 (460)
T PRK04196 152 SGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTA 230 (460)
T ss_pred CCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5999999999999886642 112 4555666543 456677777765422211 111111 123345
Q ss_pred HHHHH--cCCcEEEEEeCCCC
Q 048755 65 LEQLK--KETKILIILDDIWG 83 (674)
Q Consensus 65 ~~~l~--~~kr~LlVlDdv~~ 83 (674)
.++.. +|+++|+++||+..
T Consensus 231 AEyfr~d~G~~VLli~DslTR 251 (460)
T PRK04196 231 AEYLAFEKGMHVLVILTDMTN 251 (460)
T ss_pred HHHHHHhcCCcEEEEEcChHH
Confidence 66665 57999999999854
No 353
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=87.61 E-value=1.7 Score=39.25 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=21.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEec
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVS 32 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~ 32 (674)
||+||||+|..++......+ ..+.-|+..
T Consensus 9 gG~GKTt~a~~LA~~la~~g--~~vllvD~D 37 (169)
T cd02037 9 GGVGKSTVAVNLALALAKLG--YKVGLLDAD 37 (169)
T ss_pred CcCChhHHHHHHHHHHHHcC--CcEEEEeCC
Confidence 89999999999999887542 245556654
No 354
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=87.49 E-value=1.7 Score=43.92 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=17.2
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
.|.|||.+|+++++.....
T Consensus 157 PGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 157 KGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCCHHHHHHHHHHHcCCC
Confidence 6999999999999998765
No 355
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=87.48 E-value=1.8 Score=42.21 Aligned_cols=51 Identities=29% Similarity=0.398 Sum_probs=34.9
Q ss_pred CCCcHHHHHHHHHHhhhh-cccCc-------eEEEEEecC-CcCHHHHHHHHHHHhCCCC
Q 048755 2 GGIGKTTLVKEVGRQAKE-NNLFE-------KVISSRVSQ-TPQIKEIQREIAEKLGLKI 52 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~-~~~F~-------~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 52 (674)
||+||||++..++=.... ++.|. .+++|++-. ..++.+-++.+..+++.+.
T Consensus 98 sg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 98 SGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred CcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 899999999988755442 33443 477777753 3356666777888887653
No 356
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=87.42 E-value=2.3 Score=48.47 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=61.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+||||+|+.++...... |.. ++++...+..++...-....+. . .....+....... ..-+++||++
T Consensus 358 pG~GKTtl~~~ia~~l~~~--~~~---i~~~~~~d~~~i~g~~~~~~g~-----~-~G~~~~~l~~~~~-~~~villDEi 425 (784)
T PRK10787 358 PGVGKTSLGQSIAKATGRK--YVR---MALGGVRDEAEIRGHRRTYIGS-----M-PGKLIQKMAKVGV-KNPLFLLDEI 425 (784)
T ss_pred CCCCHHHHHHHHHHHhCCC--EEE---EEcCCCCCHHHhccchhccCCC-----C-CcHHHHHHHhcCC-CCCEEEEECh
Confidence 6999999999999876543 422 3344333332221111001110 0 1111111111111 2347889998
Q ss_pred CCccc------hhhccCCcCC---------------CCCCeEEEEEeCChhhhhccCCCcceEecCCCCHHHHHHHHHHH
Q 048755 82 WGSLD------LEAIGIPVAD---------------DNGGCKVLLTARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKM 140 (674)
Q Consensus 82 ~~~~~------~~~l~~~~~~---------------~~~gs~ilvTtr~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~ 140 (674)
+.... ...+...+.+ .-.+..+|.|+....+-......-.++.+.+++.++-.++..++
T Consensus 426 dk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~ 505 (784)
T PRK10787 426 DKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRH 505 (784)
T ss_pred hhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHh
Confidence 64411 1222211111 11233344455433322222234467889999999988887766
Q ss_pred h
Q 048755 141 T 141 (674)
Q Consensus 141 ~ 141 (674)
.
T Consensus 506 L 506 (784)
T PRK10787 506 L 506 (784)
T ss_pred h
Confidence 5
No 357
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=87.36 E-value=0.4 Score=41.01 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=20.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP 35 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~ 35 (674)
+|+||||+|.+++....- -|+++|+-.
T Consensus 16 PG~GKstl~~~lae~~~~-------~~i~isd~v 42 (176)
T KOG3347|consen 16 PGTGKSTLAERLAEKTGL-------EYIEISDLV 42 (176)
T ss_pred CCCCchhHHHHHHHHhCC-------ceEehhhHH
Confidence 799999999999965442 367777543
No 358
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=87.34 E-value=0.95 Score=41.90 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=24.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP 35 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~ 35 (674)
||+||||+|..++.....+ =..++-++.....
T Consensus 8 GG~GKTt~a~~la~~la~~--g~~VlliD~D~~~ 39 (195)
T PF01656_consen 8 GGVGKTTIAANLAQALARK--GKKVLLIDLDPQA 39 (195)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TS-EEEEEESTTS
T ss_pred CCccHHHHHHHHHhccccc--cccccccccCccc
Confidence 9999999999999988874 2356667775443
No 359
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=87.31 E-value=2.1 Score=45.19 Aligned_cols=82 Identities=18% Similarity=0.278 Sum_probs=49.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc-CHHHHHHHHHHHhCCCC--------------cccchH------HH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKI--------------DEESET------VR 60 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~--------------~~~~~~------~~ 60 (674)
+|+|||+|+.++.......+ =+.++++-+.+.. .+.++.+.+...--... .+++.. ..
T Consensus 170 ~GvGKs~L~~~~~~~~~~~~-~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~R~~a~~~ 248 (494)
T CHL00060 170 AGVGKTVLIMELINNIAKAH-GGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLT 248 (494)
T ss_pred CCCChhHHHHHHHHHHHHhc-CCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHHHHHHHHHH
Confidence 59999999999988744221 1567777776543 56777777765211110 011111 12
Q ss_pred HHHHHHHHHc-C-CcEEEEEeCCCCc
Q 048755 61 AWRLLEQLKK-E-TKILIILDDIWGS 84 (674)
Q Consensus 61 ~~~~~~~l~~-~-kr~LlVlDdv~~~ 84 (674)
+..+.++... + +.+||++||+...
T Consensus 249 A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 249 ALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHcCCCCEEEEcccchHH
Confidence 3345566643 4 4999999998643
No 360
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=87.24 E-value=0.51 Score=43.81 Aligned_cols=98 Identities=19% Similarity=0.213 Sum_probs=46.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHH-------HHHhCCCCcccchHHHHHHHHHHHHcCCcE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREI-------AEKLGLKIDEESETVRAWRLLEQLKKETKI 74 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i-------~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~ 74 (674)
+|+||||+++.+........ ..+.+...+.....++.+.+ .+.+............. . .++-
T Consensus 27 aGtGKT~~l~~~~~~~~~~g---~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~-------~-~~~~ 95 (196)
T PF13604_consen 27 AGTGKTTLLKALAEALEAAG---KRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPE-------L-PKKD 95 (196)
T ss_dssp TTSTHHHHHHHHHHHHHHTT-----EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC---------TSTS
T ss_pred CCCCHHHHHHHHHHHHHhCC---CeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCccccccccc-------C-Cccc
Confidence 79999999999988877652 23333343443444444332 11111111100000000 1 2345
Q ss_pred EEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCChhh
Q 048755 75 LIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQDV 112 (674)
Q Consensus 75 LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~~ 112 (674)
+||+|+++... ++..+...... .|.|+|+.--..+.
T Consensus 96 vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~QL 133 (196)
T PF13604_consen 96 VLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQL 133 (196)
T ss_dssp EEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTSH
T ss_pred EEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcchh
Confidence 99999998653 45554433222 47788776654443
No 361
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=87.17 E-value=2.5 Score=47.12 Aligned_cols=127 Identities=13% Similarity=0.173 Sum_probs=71.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccC-----ceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLF-----EKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILI 76 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~Ll 76 (674)
+|+|||++|..++.+....+-- ..++-.+++ .-+....-...-.+....+++.+...++.+|
T Consensus 200 pGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g-------------~LvAGakyRGeFEeRlk~vl~ev~~~~~vIL 266 (786)
T COG0542 200 PGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG-------------SLVAGAKYRGEFEERLKAVLKEVEKSKNVIL 266 (786)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH-------------HHhccccccCcHHHHHHHHHHHHhcCCCeEE
Confidence 5999999999999987754211 112222221 1111111111223345666777776569999
Q ss_pred EEeCCCCcc----------chhhccCCcCCCCCCeEEEEEeCChhhh-----hccCCCcceEecCCCCHHHHHHHHHHHh
Q 048755 77 ILDDIWGSL----------DLEAIGIPVADDNGGCKVLLTARSQDVL-----SCKMDCQQNFVVDVLNEKEAWSLFKKMT 141 (674)
Q Consensus 77 VlDdv~~~~----------~~~~l~~~~~~~~~gs~ilvTtr~~~~~-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 141 (674)
++|.+...- +-..+..|-...+.-..|-.||-++..- ....+.-+.+.++.-+.+++..++.-..
T Consensus 267 FIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 267 FIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred EEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 999986431 1122222322334444566677654321 1122445788999999999999887544
No 362
>PRK03839 putative kinase; Provisional
Probab=87.17 E-value=0.41 Score=43.80 Aligned_cols=19 Identities=32% Similarity=0.399 Sum_probs=16.8
Q ss_pred CCCCcHHHHHHHHHHhhhh
Q 048755 1 MGGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~ 19 (674)
++|+||||+|+.++++...
T Consensus 8 ~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 8 TPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 5899999999999998753
No 363
>CHL00206 ycf2 Ycf2; Provisional
Probab=87.11 E-value=6.1 Score=48.50 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=16.5
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
.|+|||.||+++|.+..+-
T Consensus 1639 PGTGKTlLAKALA~es~VP 1657 (2281)
T CHL00206 1639 IGTGRSYLVKYLATNSYVP 1657 (2281)
T ss_pred CCCCHHHHHHHHHHhcCCc
Confidence 6999999999999986644
No 364
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=87.04 E-value=2.9 Score=44.31 Aligned_cols=79 Identities=16% Similarity=0.244 Sum_probs=46.2
Q ss_pred CCCcHHHHH-HHHHHhhhhcccCce-EEEEEecCC-cCHHHHHHHHHHHhCCCC-------cccchHH------HHHHHH
Q 048755 2 GGIGKTTLV-KEVGRQAKENNLFEK-VISSRVSQT-PQIKEIQREIAEKLGLKI-------DEESETV------RAWRLL 65 (674)
Q Consensus 2 gGiGKTtla-~~~~~~~~~~~~F~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~------~~~~~~ 65 (674)
.|+|||||| -.++++.. -+. ++++-+.+. ..+.++.+++.+.=.... .+++... ....+.
T Consensus 171 ~g~GKT~Lal~~I~~q~~----~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~~a~aiA 246 (497)
T TIGR03324 171 RQTGKTAIAIDTILNQKG----RNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSIG 246 (497)
T ss_pred CCCCHHHHHHHHHHHhcC----CCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 399999996 57887643 233 566777655 456667777665422211 1111111 122344
Q ss_pred HHHH-cCCcEEEEEeCCCCc
Q 048755 66 EQLK-KETKILIILDDIWGS 84 (674)
Q Consensus 66 ~~l~-~~kr~LlVlDdv~~~ 84 (674)
++.. +|+.+|+|+||+...
T Consensus 247 Eyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 247 EHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHhCCCCEEEEEcChhHH
Confidence 4442 579999999998643
No 365
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=87.01 E-value=1.4 Score=43.05 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=16.8
Q ss_pred CCCCcHHHHHHHHHHhhhhc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~ 20 (674)
++|+||||+|+.+.......
T Consensus 9 ~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 9 LPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -TTSSHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHhc
Confidence 47999999999999987763
No 366
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=86.99 E-value=4.3 Score=35.70 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=16.0
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
+|+||||+|+.+......
T Consensus 8 ~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 8 SGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 699999999999998763
No 367
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=86.83 E-value=1.2 Score=42.53 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCCc------ccchHHHHHHHHHHHHcCCcEEEEEeCCCCc------cchhhccCCcCCCCCCeEEEEE
Q 048755 39 EIQREIAEKLGLKID------EESETVRAWRLLEQLKKETKILIILDDIWGS------LDLEAIGIPVADDNGGCKVLLT 106 (674)
Q Consensus 39 ~~~~~i~~~l~~~~~------~~~~~~~~~~~~~~l~~~kr~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~ilvT 106 (674)
+..++.++.++...- +-+-.+.+..++.+.+-.++=|+|||+-... .....+...+... |.-|++.
T Consensus 118 ~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~v 195 (254)
T COG1121 118 EKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMV 195 (254)
T ss_pred HHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEE
Confidence 445556666654321 1122223333444444447889999964322 2334443343332 7889999
Q ss_pred eCChhhh
Q 048755 107 ARSQDVL 113 (674)
Q Consensus 107 tr~~~~~ 113 (674)
|.+-...
T Consensus 196 tHDL~~v 202 (254)
T COG1121 196 THDLGLV 202 (254)
T ss_pred eCCcHHh
Confidence 9986554
No 368
>PRK09099 type III secretion system ATPase; Provisional
Probab=86.78 E-value=2.4 Score=44.38 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=46.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCC-------cccchHH------HHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKI-------DEESETV------RAWRLLEQL 68 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~~~------~~~~~~~~l 68 (674)
.|+|||||++.++...... .++++..--+...+.++.+++...-+... .+++... ....+.+++
T Consensus 172 sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAEyf 248 (441)
T PRK09099 172 AGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEYF 248 (441)
T ss_pred CCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 5999999999998765432 24554444455566677676654432221 1111111 122344444
Q ss_pred H-cCCcEEEEEeCCCCc
Q 048755 69 K-KETKILIILDDIWGS 84 (674)
Q Consensus 69 ~-~~kr~LlVlDdv~~~ 84 (674)
. +|+.+|+++||+...
T Consensus 249 rd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 249 RDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHcCCCEEEeccchhHH
Confidence 3 579999999998643
No 369
>PRK12678 transcription termination factor Rho; Provisional
Probab=86.68 E-value=2.3 Score=45.57 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=43.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceE-EEEEecC-CcCHHHHHHHHHHHh-CCCCccc-----chHHHHHHHHHHHH-cCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKV-ISSRVSQ-TPQIKEIQREIAEKL-GLKIDEE-----SETVRAWRLLEQLK-KET 72 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~-~wv~~~~-~~~~~~~~~~i~~~l-~~~~~~~-----~~~~~~~~~~~~l~-~~k 72 (674)
.|+|||||++.+++..... +-+.. +.+-+.+ ...+.++.+.+-..+ ....+.. .....+..+.+++. .|+
T Consensus 425 p~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~fre~G~ 503 (672)
T PRK12678 425 PKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVELGK 503 (672)
T ss_pred CCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5899999999999977643 12333 3333433 223444444431111 1111111 11122334445553 579
Q ss_pred cEEEEEeCCCCc
Q 048755 73 KILIILDDIWGS 84 (674)
Q Consensus 73 r~LlVlDdv~~~ 84 (674)
.+||++|++...
T Consensus 504 dVlillDSlTR~ 515 (672)
T PRK12678 504 DVVVLLDSITRL 515 (672)
T ss_pred CEEEEEeCchHH
Confidence 999999998643
No 370
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=86.68 E-value=0.79 Score=44.81 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=24.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT 34 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 34 (674)
||+||||+|-.++....... -..|.-|+....
T Consensus 12 GGvGKTT~a~nLa~~La~~~-~~kVLliDlDpQ 43 (259)
T COG1192 12 GGVGKTTTAVNLAAALAKRG-GKKVLLIDLDPQ 43 (259)
T ss_pred CCccHHHHHHHHHHHHHHhc-CCcEEEEeCCCc
Confidence 89999999999999988431 146787877653
No 371
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=86.66 E-value=3.4 Score=40.64 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=30.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 47 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 47 (674)
+|+||||+|.+++.+...+.. ..++|+++.. +..++.+.+...
T Consensus 39 ~G~GKT~l~~~~~~~~~~~~g-~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 39 TGVGKTTFLREYALDLITQHG-VRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCCCHHHHHHHHHHHHHHhcC-ceEEEEEccc--CHHHHHHHHHHH
Confidence 699999999999887754411 3588887755 456666666544
No 372
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=86.65 E-value=3.4 Score=39.80 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHHhhhh
Q 048755 1 MGGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~ 19 (674)
.+|+|||+||..++-....
T Consensus 9 ~~G~GKS~lal~la~~va~ 27 (239)
T cd01125 9 PGGTGKSSLLLVLALAMAL 27 (239)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 4899999999999887653
No 373
>PRK00889 adenylylsulfate kinase; Provisional
Probab=86.61 E-value=1.9 Score=39.11 Aligned_cols=20 Identities=30% Similarity=0.640 Sum_probs=17.1
Q ss_pred CCCCcHHHHHHHHHHhhhhc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~ 20 (674)
++|+||||+|++++......
T Consensus 12 ~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 12 LSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 47999999999999988643
No 374
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=86.57 E-value=3 Score=37.47 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
.|.|||||++.++....
T Consensus 36 nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 36 SGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCCHHHHHHHHhcCCC
Confidence 59999999999998654
No 375
>PTZ00088 adenylate kinase 1; Provisional
Probab=86.48 E-value=0.73 Score=43.81 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
++|+||||+|+.++..+.
T Consensus 14 ~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 14 APGVGKGTFAEILSKKEN 31 (229)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999988765
No 376
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=86.43 E-value=1.1 Score=41.80 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=30.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCc
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKID 53 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 53 (674)
||+||||+|..++.+...++.| .+.=|+...+++ +.+++|....
T Consensus 9 GG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~n-------L~~~LGve~~ 52 (255)
T COG3640 9 GGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSN-------LPEALGVEEP 52 (255)
T ss_pred CCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCC-------hHHhcCCCCC
Confidence 8999999999988887776543 355566666554 3456666543
No 377
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=86.33 E-value=3.3 Score=43.18 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=29.5
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-cCHHHHHHHHHHHhCCC
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLK 51 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~ 51 (674)
..|+||||+|.+++.....+. + .+..|+.... ....+-++..++..+.+
T Consensus 108 ~~GvGKTTtaaKLA~~l~~~G-~-kV~lV~~D~~R~aA~eQLk~~a~~~~vp 157 (429)
T TIGR01425 108 LQGSGKTTTCTKLAYYYQRKG-F-KPCLVCADTFRAGAFDQLKQNATKARIP 157 (429)
T ss_pred CCCCCHHHHHHHHHHHHHHCC-C-CEEEEcCcccchhHHHHHHHHhhccCCe
Confidence 379999999999998776442 2 4555555321 13333344455555543
No 378
>PRK00625 shikimate kinase; Provisional
Probab=86.33 E-value=0.5 Score=42.74 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
|.|+||||+|+.++++..
T Consensus 8 ~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 8 LPTVGKTSFGKALAKFLS 25 (173)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 689999999999998875
No 379
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.26 E-value=0.34 Score=27.90 Aligned_cols=18 Identities=17% Similarity=0.623 Sum_probs=14.0
Q ss_pred cCCccEEEEecCCCcccc
Q 048755 636 FSKLKTIRVEGCDKLKNV 653 (674)
Q Consensus 636 l~~L~~L~i~~C~~L~~l 653 (674)
+|+|++|+|++|+++.+.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 478888888888877654
No 380
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=86.24 E-value=0.95 Score=45.23 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=29.3
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHH
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE 43 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 43 (674)
.||+||||+|.+.+-..... ...+.=|+.....+..+++..
T Consensus 10 KGGVGKTT~aaA~A~~lA~~--g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 10 KGGVGKTTIAAATAVKLAES--GKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred CCcccHHHHHHHHHHHHHHc--CCcEEEEEeCCCCchHhhhcc
Confidence 39999999999988877766 345676666655555555444
No 381
>PRK08149 ATP synthase SpaL; Validated
Probab=86.23 E-value=3.2 Score=43.27 Aligned_cols=79 Identities=13% Similarity=0.250 Sum_probs=45.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEec-CCcCHHHHHHHHHHHhCCC-------CcccchH------HHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVS-QTPQIKEIQREIAEKLGLK-------IDEESET------VRAWRLLEQ 67 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~~~~~ 67 (674)
.|+|||||+..++..... +.++...+. +..++.++.++........ ..+++.. ..+..+.++
T Consensus 160 sG~GKTTLl~~i~~~~~~----dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiAE~ 235 (428)
T PRK08149 160 AGCGKTSLMNMLIEHSEA----DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAEY 235 (428)
T ss_pred CCCChhHHHHHHhcCCCC----CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHHHHHH
Confidence 699999999999876543 233333343 3345666666666543221 1111111 112234444
Q ss_pred HH-cCCcEEEEEeCCCCc
Q 048755 68 LK-KETKILIILDDIWGS 84 (674)
Q Consensus 68 l~-~~kr~LlVlDdv~~~ 84 (674)
+. .||++||++||+...
T Consensus 236 fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 236 FRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHcCCCEEEEccchHHH
Confidence 42 579999999998643
No 382
>PHA02518 ParA-like protein; Provisional
Probab=86.21 E-value=1.2 Score=41.84 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=26.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKE 39 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 39 (674)
||+||||+|..++....... ..+.-|+.....+...
T Consensus 10 GGvGKTT~a~~la~~la~~g--~~vlliD~D~q~~~~~ 45 (211)
T PHA02518 10 GGAGKTTVATNLASWLHADG--HKVLLVDLDPQGSSTD 45 (211)
T ss_pred CCCCHHHHHHHHHHHHHhCC--CeEEEEeCCCCCChHH
Confidence 89999999999998877542 2577777765554433
No 383
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=86.18 E-value=8.6 Score=37.86 Aligned_cols=58 Identities=10% Similarity=0.015 Sum_probs=35.7
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVL 128 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L 128 (674)
+++=++|+|+++.. +.++++..-+.....++.+|++|.+.+.. .......+.+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 45567888999865 45666665565556677777777765443 222234556666654
No 384
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=86.06 E-value=3.7 Score=38.04 Aligned_cols=74 Identities=19% Similarity=0.121 Sum_probs=37.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccC--ceEEEEEecCCcCHHHHHHHHHHHhC----CCCcccchHHHHHHHHHHHHcCCcEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLF--EKVISSRVSQTPQIKEIQREIAEKLG----LKIDEESETVRAWRLLEQLKKETKIL 75 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~----~~~~~~~~~~~~~~~~~~l~~~kr~L 75 (674)
+|+||||+|++++........= ..+..+.............. -.... ......-+.....+.+..+..+++.-
T Consensus 8 sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~L~~g~~i~ 86 (194)
T PF00485_consen 8 SGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKALKNGGSIE 86 (194)
T ss_dssp TTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHHHHTTSCEE
T ss_pred CCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHHHhCCCccc
Confidence 7999999999999988754211 12333333322222222222 12111 11122334455566667777766654
Q ss_pred E
Q 048755 76 I 76 (674)
Q Consensus 76 l 76 (674)
+
T Consensus 87 ~ 87 (194)
T PF00485_consen 87 I 87 (194)
T ss_dssp E
T ss_pred c
Confidence 4
No 385
>PRK06936 type III secretion system ATPase; Provisional
Probab=85.99 E-value=3.4 Score=43.19 Aligned_cols=79 Identities=18% Similarity=0.306 Sum_probs=45.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-cCHHHHHHHHHHHhCCCC-------cccchHH------HHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLKI-------DEESETV------RAWRLLEQ 67 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~------~~~~~~~~ 67 (674)
.|+|||||.+.+++.... +.++.+-+.+. ..+.++.++.+..-+... .+++... .+..+.++
T Consensus 171 sG~GKStLl~~Ia~~~~~----dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEy 246 (439)
T PRK06936 171 AGGGKSTLLASLIRSAEV----DVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEY 246 (439)
T ss_pred CCCChHHHHHHHhcCCCC----CEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 599999999999987653 45666666544 345555554433211111 1111111 11233344
Q ss_pred HH-cCCcEEEEEeCCCCc
Q 048755 68 LK-KETKILIILDDIWGS 84 (674)
Q Consensus 68 l~-~~kr~LlVlDdv~~~ 84 (674)
.. .|+++|+++||+...
T Consensus 247 frd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 247 FRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHcCCCEEEeccchhHH
Confidence 42 579999999998643
No 386
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=85.98 E-value=1.3 Score=50.35 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=59.7
Q ss_pred CCcEEEEEeCCCCccc---hhhc----cCCcCCCCCCeEEEEEeCChhhhhccCCCcc--eEecCCCCHHHHHHHHHHHh
Q 048755 71 ETKILIILDDIWGSLD---LEAI----GIPVADDNGGCKVLLTARSQDVLSCKMDCQQ--NFVVDVLNEKEAWSLFKKMT 141 (674)
Q Consensus 71 ~kr~LlVlDdv~~~~~---~~~l----~~~~~~~~~gs~ilvTtr~~~~~~~~~~~~~--~~~l~~L~~~~~~~lf~~~~ 141 (674)
.++-|+++|+.....+ ...+ ...+ ...|+.+|+||...+.......... .+.|. ++.+ ... |..+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l~-p~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TLS-PTYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CCc-eEEEE
Confidence 3689999999865422 2222 2222 1357889999998876421111111 11111 1111 111 11111
Q ss_pred CCCCCCCchhHHHHHHHHHhCCchhhHHHHHHHHhcCChHHHHHHHHHhcc
Q 048755 142 GDCIENGELKSVATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLKR 192 (674)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~~~~~w~~~l~~l~~ 192 (674)
-...+ -...|-.|++++ |+|-.+..-|..+.........++++.+.+
T Consensus 476 ~~G~~---g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 476 LKGIP---GESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred CCCCC---CCcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11111 134677888776 788888777777776656666666666554
No 387
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=85.97 E-value=2.9 Score=43.74 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=43.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCC------CcccchHH------HHHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLK------IDEESETV------RAWRLLEQLK 69 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~------~~~~~~~~------~~~~~~~~l~ 69 (674)
.|+|||||++.++..... ..++++..--+..++.++.+..+...... ..+++... ....+.+++.
T Consensus 174 SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfr 250 (450)
T PRK06002 174 SGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAIAEYFR 250 (450)
T ss_pred CCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 699999999988765432 23455544334445555555444332111 11111111 1223334442
Q ss_pred -cCCcEEEEEeCCCCc
Q 048755 70 -KETKILIILDDIWGS 84 (674)
Q Consensus 70 -~~kr~LlVlDdv~~~ 84 (674)
+|+.+|+++||+...
T Consensus 251 d~G~~Vll~~DslTr~ 266 (450)
T PRK06002 251 DRGENVLLIVDSVTRF 266 (450)
T ss_pred HcCCCEEEeccchHHH
Confidence 479999999998543
No 388
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.91 E-value=0.64 Score=26.68 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=12.9
Q ss_pred cCCccEEecCCCCchhchHh
Q 048755 398 LKKLEILTLRGSDMEKLVEE 417 (674)
Q Consensus 398 l~~L~~L~l~~~~~~~lp~~ 417 (674)
+.+|++|++.+|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35666777777777666654
No 389
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.91 E-value=0.64 Score=26.68 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=12.9
Q ss_pred cCCccEEecCCCCchhchHh
Q 048755 398 LKKLEILTLRGSDMEKLVEE 417 (674)
Q Consensus 398 l~~L~~L~l~~~~~~~lp~~ 417 (674)
+.+|++|++.+|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35666777777777666654
No 390
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=85.90 E-value=0.59 Score=34.79 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHHhh
Q 048755 2 GGIGKTTLVKEVGRQA 17 (674)
Q Consensus 2 gGiGKTtla~~~~~~~ 17 (674)
.|+||||+|+.+.+..
T Consensus 8 ~gsGKst~~~~l~~~l 23 (69)
T cd02019 8 SGSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6999999999999986
No 391
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=85.82 E-value=2.1 Score=44.66 Aligned_cols=80 Identities=24% Similarity=0.390 Sum_probs=46.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCC-------cccchHH------HHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKI-------DEESETV------RAWRLLEQL 68 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~~~------~~~~~~~~l 68 (674)
.|+|||||++.++...+.. ..++...-.+...+.++.++.+..-+... .+++... .+..+.+++
T Consensus 165 sG~GKTtLl~~Ia~~~~~~---~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyf 241 (432)
T PRK06793 165 SGVGKSTLLGMIAKNAKAD---INVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYF 241 (432)
T ss_pred CCCChHHHHHHHhccCCCC---eEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 5999999999998876532 23443322344667777776665533221 1111111 112233333
Q ss_pred H-cCCcEEEEEeCCCCc
Q 048755 69 K-KETKILIILDDIWGS 84 (674)
Q Consensus 69 ~-~~kr~LlVlDdv~~~ 84 (674)
. +++++|+++||+...
T Consensus 242 r~~G~~VLlilDslTr~ 258 (432)
T PRK06793 242 RDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHcCCcEEEEecchHHH
Confidence 2 479999999998654
No 392
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=85.74 E-value=1.3 Score=41.11 Aligned_cols=70 Identities=24% Similarity=0.219 Sum_probs=43.7
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
|+|+||||=+..+++..-....=+++.=.++|+...++-+-.+|-...... -.+-.++.=++|||+
T Consensus 56 pPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~k--------------v~lp~grhKIiILDE 121 (333)
T KOG0991|consen 56 PPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQKK--------------VTLPPGRHKIIILDE 121 (333)
T ss_pred CCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHhh--------------ccCCCCceeEEEeec
Confidence 689999999999998877654446677777777665544433332211000 001135566888999
Q ss_pred CCCc
Q 048755 81 IWGS 84 (674)
Q Consensus 81 v~~~ 84 (674)
++..
T Consensus 122 ADSM 125 (333)
T KOG0991|consen 122 ADSM 125 (333)
T ss_pred cchh
Confidence 8765
No 393
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.68 E-value=4.4 Score=42.21 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=42.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC-CcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.|+||||++.+++.+.......+.+..+.... .....+-++..++.++.+.....+.......+..+. ..-++++|-
T Consensus 200 nG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~--~~d~VLIDT 277 (420)
T PRK14721 200 TGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR--GKHMVLIDT 277 (420)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc--CCCEEEecC
Confidence 59999999999998654332223344443332 224445566667777665443333333333333332 244577776
Q ss_pred C
Q 048755 81 I 81 (674)
Q Consensus 81 v 81 (674)
.
T Consensus 278 a 278 (420)
T PRK14721 278 V 278 (420)
T ss_pred C
Confidence 5
No 394
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=85.64 E-value=1.7 Score=47.19 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=18.3
Q ss_pred ceEecCCCCHHHHHHHHHHHhC
Q 048755 121 QNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 121 ~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
..+.+.+++.+|..+++...+.
T Consensus 256 ~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 256 VEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred heeeCCCCCHHHHHHHHHHHHH
Confidence 5678899999999999887764
No 395
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=85.58 E-value=1.8 Score=49.01 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=45.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||-||++++.-.... .+..+-|+.|. ..+ +.+.++.+....+ .+...++-+.+.+.--..|.||||
T Consensus 600 dgvGKt~lAkaLA~~~Fgs--e~~~IriDmse------~~e-vskligsp~gyvG-~e~gg~LteavrrrP~sVVLfdeI 669 (898)
T KOG1051|consen 600 DGVGKTELAKALAEYVFGS--EENFIRLDMSE------FQE-VSKLIGSPPGYVG-KEEGGQLTEAVKRRPYSVVLFEEI 669 (898)
T ss_pred CchhHHHHHHHHHHHHcCC--ccceEEechhh------hhh-hhhccCCCccccc-chhHHHHHHHHhcCCceEEEEech
Confidence 5999999999999987644 55566666654 222 4444444432211 122335666666644567888999
Q ss_pred CCcc
Q 048755 82 WGSL 85 (674)
Q Consensus 82 ~~~~ 85 (674)
+..+
T Consensus 670 EkAh 673 (898)
T KOG1051|consen 670 EKAH 673 (898)
T ss_pred hhcC
Confidence 8763
No 396
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=85.54 E-value=0.66 Score=37.85 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=16.2
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
||+||||+|..++.....
T Consensus 9 gG~Gkst~~~~la~~~~~ 26 (104)
T cd02042 9 GGVGKTTTAVNLAAALAR 26 (104)
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 899999999999988774
No 397
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.48 E-value=3.3 Score=46.35 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=48.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC-CcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.|+||||.+.+++......+.-..+..++... .....+.++...+.++.+.....+.......++.+.. +=++++|-
T Consensus 194 nGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~--~D~VLIDT 271 (767)
T PRK14723 194 TGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD--KHLVLIDT 271 (767)
T ss_pred CCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC--CCEEEEeC
Confidence 69999999999998875332223455555532 2235667777888887665433333344455555542 34788887
Q ss_pred CC
Q 048755 81 IW 82 (674)
Q Consensus 81 v~ 82 (674)
..
T Consensus 272 AG 273 (767)
T PRK14723 272 VG 273 (767)
T ss_pred CC
Confidence 65
No 398
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=85.27 E-value=1.7 Score=40.40 Aligned_cols=99 Identities=26% Similarity=0.281 Sum_probs=56.5
Q ss_pred CCCcHHHHHHHHHHhhhhc-ccCc--eEEEEEecCCcCHHHHHHHHHHHhCCCC--------cccchHHHHHHHHHHHHc
Q 048755 2 GGIGKTTLVKEVGRQAKEN-NLFE--KVISSRVSQTPQIKEIQREIAEKLGLKI--------DEESETVRAWRLLEQLKK 70 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~-~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~~~~~~~l~~ 70 (674)
+|+||||+.|.++.-.... +.|- .+.-|+-+.. |+-.+.... +-.+.--.++-+...+..
T Consensus 146 P~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersE---------Iag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 146 PQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSE---------IAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred CCCChHHHHHHHHHHhhccccccCCceEEEEeccch---------hhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 6899999999999877643 3352 3555555432 222221110 101111122333444444
Q ss_pred CCcEEEEEeCCCCccchhhccCCcCCCCCCeEEEEEeCChhh
Q 048755 71 ETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDV 112 (674)
Q Consensus 71 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~ 112 (674)
--+=.+|+|.+...++..++..++ ..|-+++.|..-..+
T Consensus 217 m~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~i 255 (308)
T COG3854 217 MSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGI 255 (308)
T ss_pred cCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccH
Confidence 457789999999888776665544 347788777765444
No 399
>PRK06762 hypothetical protein; Provisional
Probab=85.17 E-value=0.61 Score=41.98 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHhh
Q 048755 1 MGGIGKTTLVKEVGRQA 17 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~ 17 (674)
+.|+||||+|+.++++.
T Consensus 10 ~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 10 NSGSGKTTIAKQLQERL 26 (166)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999887
No 400
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=84.95 E-value=3.8 Score=43.50 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=43.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC-CcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.|+||||++.+++.....+..-..+..|+... .....+-++...+..+.......+.......+..+. .+-.+++|-
T Consensus 265 nGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~--d~d~VLIDT 342 (484)
T PRK06995 265 TGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELR--NKHIVLIDT 342 (484)
T ss_pred CCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhcc--CCCeEEeCC
Confidence 59999999999998876442222455555533 234455566667776654332211111111222222 234777777
Q ss_pred CC
Q 048755 81 IW 82 (674)
Q Consensus 81 v~ 82 (674)
..
T Consensus 343 aG 344 (484)
T PRK06995 343 IG 344 (484)
T ss_pred CC
Confidence 64
No 401
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=84.77 E-value=0.38 Score=47.17 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=37.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHH-hCCCCcc-cchHHHHHHHHHHHHcCCcEEEEEe
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK-LGLKIDE-ESETVRAWRLLEQLKKETKILIILD 79 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~~~-~~~~~~~~~~~~~l~~~kr~LlVlD 79 (674)
.|+|||++++.......... | .+.-++++..-+...++ ++++. +...... -.. ..+|+.++++|
T Consensus 42 ~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~~~~gP-----------~~~k~lv~fiD 107 (272)
T PF12775_consen 42 SGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQ-KIIESKLEKRRGRVYGP-----------PGGKKLVLFID 107 (272)
T ss_dssp TTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHH-HCCCTTECECTTEEEEE-----------ESSSEEEEEEE
T ss_pred CCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHH-HHHhhcEEcCCCCCCCC-----------CCCcEEEEEec
Confidence 69999999999887655432 2 24445666544444443 33322 2111000 000 13689999999
Q ss_pred CCCC
Q 048755 80 DIWG 83 (674)
Q Consensus 80 dv~~ 83 (674)
|+.-
T Consensus 108 DlN~ 111 (272)
T PF12775_consen 108 DLNM 111 (272)
T ss_dssp TTT-
T ss_pred ccCC
Confidence 9853
No 402
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=84.76 E-value=4.5 Score=39.42 Aligned_cols=30 Identities=17% Similarity=0.209 Sum_probs=22.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 33 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 33 (674)
+|+|||++|.+++.+...+ =..+++++.-.
T Consensus 45 pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 45 SDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 6999999999987765533 23577777753
No 403
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=84.73 E-value=2.2 Score=38.76 Aligned_cols=100 Identities=26% Similarity=0.230 Sum_probs=48.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCc---------eEEEEEecCCcCHHHHHHHHHHHhCCCCc--cc-----chHHH-HHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFE---------KVISSRVSQTPQIKEIQREIAEKLGLKID--EE-----SETVR-AWRL 64 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~---------~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~-----~~~~~-~~~~ 64 (674)
.|+|||||.+.+..+ ..+-.+. .+.|+ .+ .+.++.++.... .. +..+. ...+
T Consensus 30 nG~GKSTLl~~il~~-~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~l 98 (176)
T cd03238 30 SGSGKSTLVNEGLYA-SGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKL 98 (176)
T ss_pred CCCCHHHHHHHHhhc-CCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHHHHHHHHH
Confidence 599999999998642 1110011 12221 11 456666665421 11 11111 2233
Q ss_pred HHHHHcCC--cEEEEEeCCCCccc---hhhccCCcCC-CCCCeEEEEEeCChhhh
Q 048755 65 LEQLKKET--KILIILDDIWGSLD---LEAIGIPVAD-DNGGCKVLLTARSQDVL 113 (674)
Q Consensus 65 ~~~l~~~k--r~LlVlDdv~~~~~---~~~l~~~~~~-~~~gs~ilvTtr~~~~~ 113 (674)
...+.. + +=++++|+....-+ .+.+...+.. ...|..||++|.+....
T Consensus 99 aral~~-~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~ 152 (176)
T cd03238 99 ASELFS-EPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL 152 (176)
T ss_pred HHHHhh-CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 444444 5 67888898754322 2222222211 12366788888887664
No 404
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=84.73 E-value=3.3 Score=43.20 Aligned_cols=80 Identities=23% Similarity=0.362 Sum_probs=44.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCC-------cccchHH------HHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKI-------DEESETV------RAWRLLEQL 68 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~~~------~~~~~~~~l 68 (674)
.|+|||||++.++...... ..++...--+...+.++.+..+..-+... .+++... .+..+.+++
T Consensus 149 sG~GKTtLl~~I~~~~~~~---~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyf 225 (418)
T TIGR03498 149 SGVGKSTLLSMLARNTDAD---VVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYF 225 (418)
T ss_pred CCCChHHHHHHHhCCCCCC---EEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 6999999999998765432 23333333334455666665544322221 1111111 122344444
Q ss_pred H-cCCcEEEEEeCCCCc
Q 048755 69 K-KETKILIILDDIWGS 84 (674)
Q Consensus 69 ~-~~kr~LlVlDdv~~~ 84 (674)
. +|+.+|+++||+...
T Consensus 226 rd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 226 RDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHcCCCEEEeccchhHH
Confidence 3 578999999998643
No 405
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=84.71 E-value=1.5 Score=41.12 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=25.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQI 37 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~ 37 (674)
||.||||.+..++.....++ ..|.-|+...+...
T Consensus 11 GGaGKTT~~~~LAs~la~~G--~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARG--ARVALIDADPNQPL 44 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCC--CeEEEEeCCCCCcH
Confidence 89999999999999987652 35777777655443
No 406
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=84.59 E-value=0.68 Score=40.34 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
++|+||||+|+.++....
T Consensus 7 ~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 7 PPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp STTSSHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHHCC
Confidence 479999999999986655
No 407
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=84.58 E-value=0.88 Score=37.40 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=16.5
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
+|+|||++|..++.+....
T Consensus 7 ~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 7 PGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 6999999999998877754
No 408
>PRK08233 hypothetical protein; Provisional
Probab=84.50 E-value=0.63 Score=42.60 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
.+|+||||+|+.++....
T Consensus 11 ~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 11 VSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CCCCCHHHHHHHHHhhCC
Confidence 379999999999998765
No 409
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=84.49 E-value=1.9 Score=42.08 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=34.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLK 51 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 51 (674)
+|+|||++|.+++.....+ ...++||+... +.+++.+...+ ++..
T Consensus 32 pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e--~~~~l~~~~~~-~g~d 76 (260)
T COG0467 32 PGTGKTIFALQFLYEGARE--GEPVLYVSTEE--SPEELLENARS-FGWD 76 (260)
T ss_pred CCCcHHHHHHHHHHHHHhc--CCcEEEEEecC--CHHHHHHHHHH-cCCC
Confidence 6999999999999998876 77899988865 45566655544 4443
No 410
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.41 E-value=1.7 Score=39.27 Aligned_cols=17 Identities=41% Similarity=0.472 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
.|.|||||.+.++.-..
T Consensus 37 nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 37 SGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCCHHHHHHHHHcCCC
Confidence 59999999999998755
No 411
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=84.38 E-value=2 Score=41.00 Aligned_cols=40 Identities=28% Similarity=0.252 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREI 44 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 44 (674)
+|+|||++|.+++.....+. =..+++|++.. +.+++.+++
T Consensus 28 ~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~ee--~~~~l~~~~ 67 (226)
T PF06745_consen 28 PGSGKTTLALQFLYNGLKNF-GEKVLYVSFEE--PPEELIENM 67 (226)
T ss_dssp TTSSHHHHHHHHHHHHHHHH-T--EEEEESSS---HHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhhhhc-CCcEEEEEecC--CHHHHHHHH
Confidence 69999999999876554330 12577777654 445555554
No 412
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=84.29 E-value=6.8 Score=37.72 Aligned_cols=43 Identities=9% Similarity=0.183 Sum_probs=30.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 47 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 47 (674)
+|+|||++|.+++.+...+.. ..++|++.- .+..++.+.+...
T Consensus 22 ~G~GKT~~~~~~~~~~~~~~g-~~vly~s~E--~~~~~~~~r~~~~ 64 (242)
T cd00984 22 PSMGKTAFALNIAENIAKKQG-KPVLFFSLE--MSKEQLLQRLLAS 64 (242)
T ss_pred CCCCHHHHHHHHHHHHHHhCC-CceEEEeCC--CCHHHHHHHHHHH
Confidence 699999999999887775522 246776654 3566777776543
No 413
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=84.23 E-value=0.73 Score=38.71 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=14.6
Q ss_pred CCcHHHHHHHHHHhhhhc
Q 048755 3 GIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 3 GiGKTtla~~~~~~~~~~ 20 (674)
|+||||++|.++......
T Consensus 25 GaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 25 GAGKTTFVRGLARALGID 42 (123)
T ss_dssp TSSHHHHHHHHHHHTT--
T ss_pred CCCHHHHHHHHHHHcCCC
Confidence 899999999999876543
No 414
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=84.10 E-value=5.9 Score=40.51 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=52.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-cCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.|+||||-..+++.++.-...=..|..|+.... ....+-++..++-++.+..-..+.....+.+..+.. +=+|.+|-
T Consensus 212 TGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~--~d~ILVDT 289 (407)
T COG1419 212 TGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD--CDVILVDT 289 (407)
T ss_pred CCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc--CCEEEEeC
Confidence 699999998888888772212245777766543 366777888888888887665555555666665653 34556676
Q ss_pred CC
Q 048755 81 IW 82 (674)
Q Consensus 81 v~ 82 (674)
+.
T Consensus 290 aG 291 (407)
T COG1419 290 AG 291 (407)
T ss_pred CC
Confidence 54
No 415
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=84.08 E-value=2.8 Score=43.69 Aligned_cols=80 Identities=21% Similarity=0.383 Sum_probs=42.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCC-------CcccchHH------HHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLK-------IDEESETV------RAWRLLEQL 68 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~------~~~~~~~~l 68 (674)
.|+|||||++.+++..... . .++...--+...+.++.++.+..-+.. ..+++... .+..+.++.
T Consensus 146 sG~GKTtLl~~i~~~~~~~--~-gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiAEyf 222 (413)
T TIGR03497 146 SGVGKSTLLGMIARNAKAD--I-NVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYF 222 (413)
T ss_pred CCCCHHHHHHHHhCCCCCC--e-EEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 6999999999998765533 1 233322223334555555544332111 01111111 122344444
Q ss_pred H-cCCcEEEEEeCCCCc
Q 048755 69 K-KETKILIILDDIWGS 84 (674)
Q Consensus 69 ~-~~kr~LlVlDdv~~~ 84 (674)
. +|+.+|+++||+...
T Consensus 223 r~~G~~Vll~~Dsltr~ 239 (413)
T TIGR03497 223 RDQGKDVLLMMDSVTRF 239 (413)
T ss_pred HHCCCCEEEEEcCcHHH
Confidence 2 579999999998543
No 416
>PF13245 AAA_19: Part of AAA domain
Probab=83.96 E-value=2.1 Score=32.49 Aligned_cols=17 Identities=35% Similarity=0.474 Sum_probs=11.5
Q ss_pred CCCcHH-HHHHHHHHhhh
Q 048755 2 GGIGKT-TLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKT-tla~~~~~~~~ 18 (674)
+|.||| |++..+.+...
T Consensus 19 pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 19 PGTGKTTTLAARIAELLA 36 (76)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 799999 55555555553
No 417
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=83.82 E-value=2.3 Score=38.78 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=16.0
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
.|+||||+|+.++.....
T Consensus 8 sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 8 SGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 699999999999988764
No 418
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=83.78 E-value=4.5 Score=39.08 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=36.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC--CcCHHHHHHHHHHHh--CCCCc----ccchHHHHHHHHHHHHcCCc
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ--TPQIKEIQREIAEKL--GLKID----EESETVRAWRLLEQLKKETK 73 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~i~~~l--~~~~~----~~~~~~~~~~~~~~l~~~kr 73 (674)
+|+||||+|+++.+.....+. .+..++... ..+..+.-+.+.+.. +.+.+ +..+.+.+.+..+.+..++.
T Consensus 8 SGSGKTTv~~~l~~~l~~~g~--~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L~~g~~ 85 (277)
T cd02029 8 SGAGTTTVKRAFEHIFAREGI--HPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTYGETGR 85 (277)
T ss_pred CCCCHHHHHHHHHHHHHhcCC--ceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHHHcCCC
Confidence 699999999999988765421 233333321 233334433333332 22222 23344555566666665443
No 419
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=83.77 E-value=2.9 Score=36.51 Aligned_cols=92 Identities=24% Similarity=0.307 Sum_probs=45.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHH-HHHHHHHHHHcCCcEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETV-RAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~l~~~kr~LlVlDd 80 (674)
.|.|||||++.++...+.. .+.+|++-.. .++.-.. -+..+ ....+...+.. ++=++++|+
T Consensus 35 nGsGKStLl~~l~G~~~~~---~G~i~~~~~~-------------~i~~~~~-lS~G~~~rv~laral~~-~p~illlDE 96 (144)
T cd03221 35 NGAGKSTLLKLIAGELEPD---EGIVTWGSTV-------------KIGYFEQ-LSGGEKMRLALAKLLLE-NPNLLLLDE 96 (144)
T ss_pred CCCCHHHHHHHHcCCCCCC---ceEEEECCeE-------------EEEEEcc-CCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 5999999999998865432 3444443210 0000000 11111 12234445554 577899998
Q ss_pred CCCccc---hhhccCCcCCCCCCeEEEEEeCChhhh
Q 048755 81 IWGSLD---LEAIGIPVADDNGGCKVLLTARSQDVL 113 (674)
Q Consensus 81 v~~~~~---~~~l~~~~~~~~~gs~ilvTtr~~~~~ 113 (674)
....-| ...+...+... +..||++|.+....
T Consensus 97 P~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 97 PTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 754322 22221112111 23578888876654
No 420
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=83.75 E-value=2.7 Score=37.03 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
+|+||||+|+.++.++.
T Consensus 5 PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 5 PGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHhcC
Confidence 79999999999999764
No 421
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=83.72 E-value=3.9 Score=42.74 Aligned_cols=79 Identities=13% Similarity=0.196 Sum_probs=43.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC-CcCHHHHHHHHHHHhCCC-------CcccchHH------HHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLK-------IDEESETV------RAWRLLEQ 67 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~------~~~~~~~~ 67 (674)
.|+|||||++.+++... .+..+++-+.. ...+.+++++....=... ..+.+... .+..+.++
T Consensus 164 sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~a~tiAEy 239 (433)
T PRK07594 164 PGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEF 239 (433)
T ss_pred CCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999987654 33444444443 344556666654321111 01111111 12234444
Q ss_pred HH-cCCcEEEEEeCCCCc
Q 048755 68 LK-KETKILIILDDIWGS 84 (674)
Q Consensus 68 l~-~~kr~LlVlDdv~~~ 84 (674)
+. +|+++|+++||+...
T Consensus 240 frd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 240 FRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHCCCcEEEEEeCHHHH
Confidence 43 578999999999643
No 422
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=83.69 E-value=1.3 Score=43.48 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=24.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 36 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~ 36 (674)
||+||||+|..++.....++ + .|.=|+.....+
T Consensus 10 GGvGKTT~~~nLA~~La~~G-~-kVlliD~Dpq~n 42 (270)
T cd02040 10 GGIGKSTTTQNLSAALAEMG-K-KVMIVGCDPKAD 42 (270)
T ss_pred CcCCHHHHHHHHHHHHHhCC-C-eEEEEEcCCCCC
Confidence 89999999999999887542 2 567677765443
No 423
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=83.66 E-value=3.1 Score=42.76 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=23.9
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCC
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT 34 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 34 (674)
.+|+|||.||-.++.+.........++.++....
T Consensus 9 ~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 9 GAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred cCCcCHHHHHHHHHHHhhccccCCceEEEEecch
Confidence 3799999999999999822223455666666543
No 424
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=83.60 E-value=4.6 Score=40.54 Aligned_cols=79 Identities=20% Similarity=0.359 Sum_probs=44.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEec-CCcCHHHHHHHHHHHhCCCC-------cccchHH------HHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVS-QTPQIKEIQREIAEKLGLKI-------DEESETV------RAWRLLEQ 67 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~-------~~~~~~~------~~~~~~~~ 67 (674)
.|+|||||++.++...... ..+..-+. +...+.++.++....-+... .+++... ....+.++
T Consensus 78 sG~GKTtLl~~Ia~~~~~~----~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AEy 153 (326)
T cd01136 78 SGVGKSTLLGMIARGTTAD----VNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEY 153 (326)
T ss_pred CCCChHHHHHHHhCCCCCC----EEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5999999999998765532 22223332 34456666666655432211 1111111 12233333
Q ss_pred HH-cCCcEEEEEeCCCCc
Q 048755 68 LK-KETKILIILDDIWGS 84 (674)
Q Consensus 68 l~-~~kr~LlVlDdv~~~ 84 (674)
+. .||.+|+++||+...
T Consensus 154 fr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 154 FRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHcCCCeEEEeccchHH
Confidence 32 579999999998543
No 425
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=83.55 E-value=0.79 Score=46.84 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=47.9
Q ss_pred CCCcHHHHHHHHHHhhhhc----ccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEE
Q 048755 2 GGIGKTTLVKEVGRQAKEN----NLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILII 77 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlV 77 (674)
-|.|||-|.-.+|+...++ -||. . =..++.+.+-+.- ........+.+.+.+ +..||.
T Consensus 71 vG~GKT~Lmd~f~~~lp~~~k~R~HFh---------~-Fm~~vh~~l~~~~-------~~~~~l~~va~~l~~-~~~lLc 132 (362)
T PF03969_consen 71 VGRGKTMLMDLFYDSLPIKRKRRVHFH---------E-FMLDVHSRLHQLR-------GQDDPLPQVADELAK-ESRLLC 132 (362)
T ss_pred CCCchhHHHHHHHHhCCcccccccccc---------H-HHHHHHHHHHHHh-------CCCccHHHHHHHHHh-cCCEEE
Confidence 4899999999999988763 2221 0 0223333332221 122234555666664 566999
Q ss_pred EeCCC--Cccc---hhhccCCcCCCCCCeEEEEEeCChhh
Q 048755 78 LDDIW--GSLD---LEAIGIPVADDNGGCKVLLTARSQDV 112 (674)
Q Consensus 78 lDdv~--~~~~---~~~l~~~~~~~~~gs~ilvTtr~~~~ 112 (674)
||++. |..+ +..+...+ ...|. |+|+|.|..-
T Consensus 133 fDEF~V~DiaDAmil~rLf~~l--~~~gv-vlVaTSN~~P 169 (362)
T PF03969_consen 133 FDEFQVTDIADAMILKRLFEAL--FKRGV-VLVATSNRPP 169 (362)
T ss_pred EeeeeccchhHHHHHHHHHHHH--HHCCC-EEEecCCCCh
Confidence 99764 3322 22222222 23454 6666666543
No 426
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=83.47 E-value=1.6 Score=43.67 Aligned_cols=37 Identities=16% Similarity=0.399 Sum_probs=24.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEI 40 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 40 (674)
||+||||+|.+.+-+...+. ..+.-++.....+..++
T Consensus 10 GGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~ 46 (305)
T PF02374_consen 10 GGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDV 46 (305)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHH
T ss_pred CCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHH
Confidence 89999999999988877652 23555554443343333
No 427
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=83.36 E-value=2.3 Score=39.65 Aligned_cols=42 Identities=31% Similarity=0.397 Sum_probs=28.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIA 45 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 45 (674)
=|+||||.++.++.....+.. .++|.-......+-+..++++
T Consensus 12 DGaGKTT~~~~L~~~l~~~g~--~v~~trEP~~~~ige~iR~~l 53 (208)
T COG0125 12 DGAGKTTQAELLKERLEERGI--KVVLTREPGGTPIGEKIRELL 53 (208)
T ss_pred CCCCHHHHHHHHHHHHHHcCC--eEEEEeCCCCChHHHHHHHHH
Confidence 499999999999999998733 566654444434444444444
No 428
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=83.29 E-value=1.6 Score=41.19 Aligned_cols=44 Identities=11% Similarity=0.177 Sum_probs=26.5
Q ss_pred CCcEEEEEeCCCCccch-------hhccCCcCCC-CCCeEEEEEeCChhhhh
Q 048755 71 ETKILIILDDIWGSLDL-------EAIGIPVADD-NGGCKVLLTARSQDVLS 114 (674)
Q Consensus 71 ~kr~LlVlDdv~~~~~~-------~~l~~~~~~~-~~gs~ilvTtr~~~~~~ 114 (674)
.++-|+++|+.....+. .++...+... ..+..+|++|.+.+.+.
T Consensus 107 ~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~ 158 (213)
T cd03281 107 TRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFN 158 (213)
T ss_pred CCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHH
Confidence 46899999998654221 1122222222 23457999999888764
No 429
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=83.19 E-value=1.1 Score=42.94 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=20.8
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEe
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRV 31 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~ 31 (674)
++|+||||+++.+.+.....+ ..++-|+.
T Consensus 4 paGSGKTT~~~~~~~~~~~~~--~~~~~vNL 32 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWLESNG--RDVYIVNL 32 (238)
T ss_dssp STTSSHHHHHHHHHHHHTTT---S-EEEEE-
T ss_pred CCCCCHHHHHHHHHHHHHhcc--CCceEEEc
Confidence 689999999999999887653 33455544
No 430
>PRK05922 type III secretion system ATPase; Validated
Probab=83.10 E-value=5.8 Score=41.43 Aligned_cols=79 Identities=18% Similarity=0.323 Sum_probs=43.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC-CcCHHHHHHHHHHHhCCCCc-------ccchHH------HHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKID-------EESETV------RAWRLLEQ 67 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~-------~~~~~~------~~~~~~~~ 67 (674)
.|+|||||++.++..... +..+.+-++. ...+.+.+++.......... +++... .+..+.++
T Consensus 166 nG~GKSTLL~~Ia~~~~~----d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEy 241 (434)
T PRK05922 166 PGSGKSSLLSTIAKGSKS----TINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEY 241 (434)
T ss_pred CCCChHHHHHHHhccCCC----CceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 599999999999876542 2333333333 23445566555544332211 111111 12234444
Q ss_pred HH-cCCcEEEEEeCCCCc
Q 048755 68 LK-KETKILIILDDIWGS 84 (674)
Q Consensus 68 l~-~~kr~LlVlDdv~~~ 84 (674)
.. .|+++|+++||+...
T Consensus 242 frd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 242 FRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHcCCCEEEeccchhHH
Confidence 42 579999999998644
No 431
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=83.05 E-value=0.89 Score=41.39 Aligned_cols=30 Identities=30% Similarity=0.508 Sum_probs=22.5
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEec
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVS 32 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~ 32 (674)
-||+||||+|..++.....+. + .+.-|+..
T Consensus 8 kgG~GKtt~a~~la~~l~~~g-~-~vllvD~D 37 (179)
T cd02036 8 KGGVGKTTTTANLGTALAQLG-Y-KVVLIDAD 37 (179)
T ss_pred CCCCCHHHHHHHHHHHHHhCC-C-eEEEEeCC
Confidence 389999999999999887542 2 45556554
No 432
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=82.99 E-value=3.8 Score=42.70 Aligned_cols=79 Identities=23% Similarity=0.404 Sum_probs=42.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC-CcCHHHHHHHHHHHhCCC-------CcccchHH------HHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLK-------IDEESETV------RAWRLLEQ 67 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~------~~~~~~~~ 67 (674)
.|+|||||++.+++.... +..+...+.. ...+.++.++....=... ..+++... .+..+.++
T Consensus 146 sG~GKTtLl~~I~~~~~~----~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAEy 221 (411)
T TIGR03496 146 SGVGKSTLLGMMARYTEA----DVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEY 221 (411)
T ss_pred CCCCHHHHHHHHhcCCCC----CEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 699999999999875542 2333333433 234555555544331111 11111111 12233444
Q ss_pred HH-cCCcEEEEEeCCCCc
Q 048755 68 LK-KETKILIILDDIWGS 84 (674)
Q Consensus 68 l~-~~kr~LlVlDdv~~~ 84 (674)
+. .|+++|+++||+...
T Consensus 222 fr~~G~~Vll~~Dsltr~ 239 (411)
T TIGR03496 222 FRDQGKDVLLLMDSLTRF 239 (411)
T ss_pred HHHCCCCEEEEEeChHHH
Confidence 42 578999999998543
No 433
>PRK00131 aroK shikimate kinase; Reviewed
Probab=82.99 E-value=0.84 Score=41.37 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=16.2
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
++|+||||+|+.++....
T Consensus 12 ~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 12 FMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 589999999999999875
No 434
>PRK13947 shikimate kinase; Provisional
Probab=82.87 E-value=0.81 Score=41.37 Aligned_cols=20 Identities=35% Similarity=0.336 Sum_probs=17.2
Q ss_pred CCCCcHHHHHHHHHHhhhhc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~ 20 (674)
|+|+||||+|+.+++.....
T Consensus 9 ~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 9 FMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 57999999999999987643
No 435
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=82.86 E-value=8.2 Score=38.89 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=28.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-cCHHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIA 45 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~ 45 (674)
.|+|||+|+++++++.. -+.++++-+.+. ..+.++++++-
T Consensus 166 ~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 166 FGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHH
Confidence 59999999999999644 246777777654 34555666653
No 436
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=82.52 E-value=29 Score=34.83 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=32.9
Q ss_pred eEecCCCCHHHHHHHHHHHhCCCC-C-CCchhHHHHHHHHHhCCchhhH
Q 048755 122 NFVVDVLNEKEAWSLFKKMTGDCI-E-NGELKSVATEVVKECAGLPIAI 168 (674)
Q Consensus 122 ~~~l~~L~~~~~~~lf~~~~~~~~-~-~~~~~~~~~~i~~~c~g~Plal 168 (674)
++++++++.+|+..++........ . ........+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987764111 1 1333455666677779998643
No 437
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=82.46 E-value=5.7 Score=42.77 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=26.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccC-ceEEEEEecCCcCHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLF-EKVISSRVSQTPQIKEIQRE 43 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~ 43 (674)
+|+||||+|.+++.+-..+ + ..+++|++. .+.+++.+.
T Consensus 30 pGsGKT~la~qfl~~g~~~--~ge~~lyvs~e--E~~~~l~~~ 68 (484)
T TIGR02655 30 SGTGKTLFSIQFLYNGIIH--FDEPGVFVTFE--ESPQDIIKN 68 (484)
T ss_pred CCCCHHHHHHHHHHHHHHh--CCCCEEEEEEe--cCHHHHHHH
Confidence 6999999999997664433 2 357888775 345555555
No 438
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=82.43 E-value=6.2 Score=42.94 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=29.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLG 49 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 49 (674)
+|+|||++|.+++.+.... -..++|+++.. +.+++.+.. +.++
T Consensus 282 ~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~--~~~~i~~~~-~~~g 324 (509)
T PRK09302 282 TGTGKTLLASKFAEAACRR--GERCLLFAFEE--SRAQLIRNA-RSWG 324 (509)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCcEEEEEecC--CHHHHHHHH-HHcC
Confidence 6999999999998876544 35688887755 355555543 3444
No 439
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=82.27 E-value=2.9 Score=37.65 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCccc---chHHHHHHHHHHHHcCCcEEEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEE---SETVRAWRLLEQLKKETKILIIL 78 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~l~~~kr~LlVl 78 (674)
+|+||||+|..++.+.... ++++.-... ..++..+.|..........- .....+...+.....+ .-++++
T Consensus 10 ~~sGKS~~a~~l~~~~~~~-----~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~-~~~VlI 82 (170)
T PRK05800 10 ARSGKSRFAERLAAQSGLQ-----VLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP-GRCVLV 82 (170)
T ss_pred CCccHHHHHHHHHHHcCCC-----cEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC-CCEEEe
Confidence 5899999999998764321 334433333 34566777765544332221 1111233333332222 236888
Q ss_pred eCC
Q 048755 79 DDI 81 (674)
Q Consensus 79 Ddv 81 (674)
|.+
T Consensus 83 D~L 85 (170)
T PRK05800 83 DCL 85 (170)
T ss_pred hhH
Confidence 876
No 440
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=82.26 E-value=4.8 Score=42.46 Aligned_cols=79 Identities=18% Similarity=0.276 Sum_probs=43.5
Q ss_pred CCCcHHHHH-HHHHHhhhhcccCceE-EEEEecCC-cCHHHHHHHHHHHhCCCC-------cccchHHH------HHHHH
Q 048755 2 GGIGKTTLV-KEVGRQAKENNLFEKV-ISSRVSQT-PQIKEIQREIAEKLGLKI-------DEESETVR------AWRLL 65 (674)
Q Consensus 2 gGiGKTtla-~~~~~~~~~~~~F~~~-~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~------~~~~~ 65 (674)
.|+|||+|| ..+.+... -+.+ +++-+.+. ..+.++.+++.+.=.... .+++.... ...+.
T Consensus 150 ~g~GKt~Lal~~I~~q~~----~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a~aiA 225 (485)
T CHL00059 150 RQTGKTAVATDTILNQKG----QNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALA 225 (485)
T ss_pred CCCCHHHHHHHHHHhccc----CCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHHhhHH
Confidence 599999995 45666532 2333 66666643 456666666654322111 11111111 12233
Q ss_pred HHHH-cCCcEEEEEeCCCCc
Q 048755 66 EQLK-KETKILIILDDIWGS 84 (674)
Q Consensus 66 ~~l~-~~kr~LlVlDdv~~~ 84 (674)
++.. +|+++|+|+||+...
T Consensus 226 Eyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 226 EYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHHcCCCEEEEEcChhHH
Confidence 3333 579999999998653
No 441
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=82.05 E-value=5 Score=42.90 Aligned_cols=79 Identities=16% Similarity=0.263 Sum_probs=43.4
Q ss_pred CCCcHHHHH-HHHHHhhhhcccCce-EEEEEecCCc-CHHHHHHHHHHHhCCCC-------cccchHHH------HHHHH
Q 048755 2 GGIGKTTLV-KEVGRQAKENNLFEK-VISSRVSQTP-QIKEIQREIAEKLGLKI-------DEESETVR------AWRLL 65 (674)
Q Consensus 2 gGiGKTtla-~~~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~------~~~~~ 65 (674)
.|+|||+|| ..+.++.. -+. ++++-+.+.. .+.++.+++.+.=.... .+++.... +..+.
T Consensus 171 ~g~GKt~lal~~i~~~~~----~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~~a~tiA 246 (502)
T PRK09281 171 RQTGKTAIAIDTIINQKG----KDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMG 246 (502)
T ss_pred CCCCchHHHHHHHHHhcC----CCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 599999995 55655432 233 3666666544 45666666654422211 11111111 12233
Q ss_pred HHHH-cCCcEEEEEeCCCCc
Q 048755 66 EQLK-KETKILIILDDIWGS 84 (674)
Q Consensus 66 ~~l~-~~kr~LlVlDdv~~~ 84 (674)
++.. +|+.+|+|+||+...
T Consensus 247 Eyfrd~G~~VLli~DdlTr~ 266 (502)
T PRK09281 247 EYFMDNGKDALIVYDDLSKQ 266 (502)
T ss_pred HHHHHcCCCEEEEecCchHH
Confidence 3333 479999999999654
No 442
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=82.04 E-value=2.8 Score=43.90 Aligned_cols=62 Identities=26% Similarity=0.315 Sum_probs=36.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|.|||-|||+|+....+- | |......|+ +++-..| ...+..+.......-+|+|.+|++
T Consensus 346 PGTGKTlLARAvAGEA~VP--F----F~~sGSEFd------Em~VGvG--------ArRVRdLF~aAk~~APcIIFIDEi 405 (752)
T KOG0734|consen 346 PGTGKTLLARAVAGEAGVP--F----FYASGSEFD------EMFVGVG--------ARRVRDLFAAAKARAPCIIFIDEI 405 (752)
T ss_pred CCCchhHHHHHhhcccCCC--e----Eeccccchh------hhhhccc--------HHHHHHHHHHHHhcCCeEEEEech
Confidence 7999999999999887765 3 111222222 1111110 122344455555557899999987
Q ss_pred CC
Q 048755 82 WG 83 (674)
Q Consensus 82 ~~ 83 (674)
+.
T Consensus 406 Da 407 (752)
T KOG0734|consen 406 DA 407 (752)
T ss_pred hh
Confidence 53
No 443
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=82.01 E-value=2.5 Score=44.10 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
.|+|||++|+.++.....
T Consensus 117 ~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 117 TGSGKTLLAQTLARILDV 134 (412)
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 699999999999977653
No 444
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=81.99 E-value=52 Score=34.24 Aligned_cols=113 Identities=9% Similarity=0.081 Sum_probs=71.3
Q ss_pred cEEEEEeCCCCc-----------cchhhccCCcCCCCCCeEEEEEeCChhhhh---ccC--CCcceEecCCCCHHHHHHH
Q 048755 73 KILIILDDIWGS-----------LDLEAIGIPVADDNGGCKVLLTARSQDVLS---CKM--DCQQNFVVDVLNEKEAWSL 136 (674)
Q Consensus 73 r~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~---~~~--~~~~~~~l~~L~~~~~~~l 136 (674)
|=+||+||.... .+|.+.. -..+- -.||++|-+..... ... ..-..+.+...+.+.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~L---v~~nI-AHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASL---VQNNI-AHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHH---HhcCc-cEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 568999997543 2344321 12222 24666666544331 112 3345778999999999999
Q ss_pred HHHHhCCCCCC-------------------CchhHHHHHHHHHhCCchhhHHHHHHHHhc-C-ChHHHHHHHHH
Q 048755 137 FKKMTGDCIEN-------------------GELKSVATEVVKECAGLPIAIVPVAKALKN-K-SLYEWRNALRQ 189 (674)
Q Consensus 137 f~~~~~~~~~~-------------------~~~~~~~~~i~~~c~g~Plal~~~~~~l~~-~-~~~~w~~~l~~ 189 (674)
...+....... ..........++..||=-.-+..+++.++. . +.+--++++++
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 98888532110 134556788899999999999999999984 3 33444555444
No 445
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=81.97 E-value=0.95 Score=39.88 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHHhh
Q 048755 1 MGGIGKTTLVKEVGRQA 17 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~ 17 (674)
+.|+||||+|+.+....
T Consensus 7 ~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 7 VSGSGKSTVGKALAERL 23 (150)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 47999999999998874
No 446
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=81.91 E-value=0.99 Score=44.40 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 33 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 33 (674)
||+||||+|..++.....++ + .+.=|+...
T Consensus 9 GGVGKTT~~~nLA~~La~~g-~-rVLliD~D~ 38 (268)
T TIGR01281 9 GGIGKSTTSSNLSVAFAKLG-K-RVLQIGCDP 38 (268)
T ss_pred CcCcHHHHHHHHHHHHHhCC-C-eEEEEecCc
Confidence 89999999999988776442 2 355555543
No 447
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=81.80 E-value=1.2 Score=35.47 Aligned_cols=18 Identities=39% Similarity=0.682 Sum_probs=16.4
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
+|+||||+|..++.....
T Consensus 8 ~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 8 GGVGKTTLAANLAAALAK 25 (99)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 699999999999998875
No 448
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=81.74 E-value=21 Score=33.69 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=60.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|.|||-||++||++-. +-++.||.. ++.+..+ +.. .....++.--....-+-+|+.|.+
T Consensus 190 pgtGktLlaraVahht~-------c~firvsgs----elvqk~i---geg------srmvrelfvmarehapsiifmdei 249 (404)
T KOG0728|consen 190 PGTGKTLLARAVAHHTD-------CTFIRVSGS----ELVQKYI---GEG------SRMVRELFVMAREHAPSIIFMDEI 249 (404)
T ss_pred CCCchhHHHHHHHhhcc-------eEEEEechH----HHHHHHh---hhh------HHHHHHHHHHHHhcCCceEeeecc
Confidence 69999999999988554 445667653 2222211 111 011112221122234667778876
Q ss_pred CCc------------cc----hhhccCCcCCC--CCCeEEEEEeCChhhhh----ccCCCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGS------------LD----LEAIGIPVADD--NGGCKVLLTARSQDVLS----CKMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~------------~~----~~~l~~~~~~~--~~gs~ilvTtr~~~~~~----~~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+.. .+ .-.+...+..+ .++-+||+.|..-+++. +.-+..+.++.++-+++.-.+++.-
T Consensus 250 dsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilki 329 (404)
T KOG0728|consen 250 DSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKI 329 (404)
T ss_pred cccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHH
Confidence 532 00 11222333322 34567888776555541 1122445667777666666666653
Q ss_pred H
Q 048755 140 M 140 (674)
Q Consensus 140 ~ 140 (674)
+
T Consensus 330 h 330 (404)
T KOG0728|consen 330 H 330 (404)
T ss_pred h
Confidence 3
No 449
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=81.47 E-value=1.8 Score=42.77 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=23.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP 35 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~ 35 (674)
||+||||+|..++.....++ + .|.-|+.....
T Consensus 9 GGVGKTT~a~nLA~~La~~G-~-~VlliD~D~q~ 40 (275)
T TIGR01287 9 GGIGKSTTTQNIAAALAEMG-K-KVMIVGCDPKA 40 (275)
T ss_pred CcCcHHHHHHHHHHHHHHCC-C-eEEEEeCCCCC
Confidence 89999999999999888653 2 45555664433
No 450
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=81.45 E-value=1 Score=41.84 Aligned_cols=19 Identities=42% Similarity=0.539 Sum_probs=17.1
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
+|+||||+|+.+++.....
T Consensus 17 SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 17 SGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CCCCHHHHHHHHHHHhCcC
Confidence 6899999999999988855
No 451
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=81.36 E-value=5.6 Score=37.44 Aligned_cols=49 Identities=10% Similarity=0.251 Sum_probs=29.1
Q ss_pred HHHHHHcCCcEEEEEeCCCCc------cchhhccCCcCCCCCCeEEEEEeCChhhhh
Q 048755 64 LLEQLKKETKILIILDDIWGS------LDLEAIGIPVADDNGGCKVLLTARSQDVLS 114 (674)
Q Consensus 64 ~~~~l~~~kr~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~ 114 (674)
+.+.+. ..+=+|+-|+--.. +....+...+ ....|..||+.|.+..++.
T Consensus 153 IARAL~-~~P~iilADEPTgnLD~~t~~~V~~ll~~~-~~~~g~tii~VTHd~~lA~ 207 (226)
T COG1136 153 IARALI-NNPKIILADEPTGNLDSKTAKEVLELLREL-NKERGKTIIMVTHDPELAK 207 (226)
T ss_pred HHHHHh-cCCCeEEeeCccccCChHHHHHHHHHHHHH-HHhcCCEEEEEcCCHHHHH
Confidence 444555 46888888864322 2222222221 2344778999999999975
No 452
>PTZ00301 uridine kinase; Provisional
Probab=81.20 E-value=1 Score=42.13 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
+|+||||+|+.+.+....
T Consensus 12 SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 12 SGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CcCCHHHHHHHHHHHHHh
Confidence 699999999999887753
No 453
>PRK13768 GTPase; Provisional
Probab=81.19 E-value=6.6 Score=38.12 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=20.9
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEe
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRV 31 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~ 31 (674)
.||+||||++..++......+ ..++.|+.
T Consensus 10 ~~G~GKTt~~~~~~~~l~~~g--~~v~~i~~ 38 (253)
T PRK13768 10 TAGSGKTTLTKALSDWLEEQG--YDVAIVNL 38 (253)
T ss_pred CCCccHHHHHHHHHHHHHhcC--CceEEEEC
Confidence 489999999999998876542 24555544
No 454
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=81.18 E-value=4.8 Score=45.65 Aligned_cols=96 Identities=20% Similarity=0.145 Sum_probs=50.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHH-------HHHHHhCCCCcccchHHHHHHHHHHHHcCCcE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQR-------EIAEKLGLKIDEESETVRAWRLLEQLKKETKI 74 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~-------~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~ 74 (674)
+|+||||+++.+.+........ ..+++...+......+.+ +|.+.++........ ...+ .....-
T Consensus 347 pGTGKTt~l~~i~~~~~~~~~~-~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~-----~~~~--~~~~~~ 418 (720)
T TIGR01448 347 PGTGKTTITRAIIELAEELGGL-LPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRH-----NHLE--DPIDCD 418 (720)
T ss_pred CCCCHHHHHHHHHHHHHHcCCC-ceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccch-----hhhh--ccccCC
Confidence 7999999999998877654211 356666655444433332 222222221111000 0000 012345
Q ss_pred EEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeC
Q 048755 75 LIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTAR 108 (674)
Q Consensus 75 LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr 108 (674)
+||+|++.... .+..+...++ .|.++|+.--
T Consensus 419 llIvDEaSMvd~~~~~~Ll~~~~---~~~rlilvGD 451 (720)
T TIGR01448 419 LLIVDESSMMDTWLALSLLAALP---DHARLLLVGD 451 (720)
T ss_pred EEEEeccccCCHHHHHHHHHhCC---CCCEEEEECc
Confidence 99999998654 3444544443 4677776553
No 455
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=81.17 E-value=4.8 Score=38.45 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=17.0
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
.|+|||||++.++...+..
T Consensus 42 ~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 42 PGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCHHHHHHHHHHHhhhc
Confidence 6999999999999988765
No 456
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=81.16 E-value=21 Score=39.19 Aligned_cols=144 Identities=12% Similarity=0.175 Sum_probs=76.8
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.+|.|||-||.+++.....+ +|+|..+ +++.. .+|.. .+....+..+...-|+|.+.||+
T Consensus 709 ppGcGKT~la~a~a~~~~~~-------fisvKGP----ElL~K---yIGaS------Eq~vR~lF~rA~~a~PCiLFFDE 768 (952)
T KOG0735|consen 709 PPGCGKTLLASAIASNSNLR-------FISVKGP----ELLSK---YIGAS------EQNVRDLFERAQSAKPCILFFDE 768 (952)
T ss_pred CCCCcHHHHHHHHHhhCCee-------EEEecCH----HHHHH---Hhccc------HHHHHHHHHHhhccCCeEEEecc
Confidence 37999999999998876644 4666542 22222 22222 23455666666667999999998
Q ss_pred CCCc-------------cchhhccCCcCC--CCCCeEEEEEeCChhhh-hcc--CC-CcceEecCCCCHHHHHHHHHHHh
Q 048755 81 IWGS-------------LDLEAIGIPVAD--DNGGCKVLLTARSQDVL-SCK--MD-CQQNFVVDVLNEKEAWSLFKKMT 141 (674)
Q Consensus 81 v~~~-------------~~~~~l~~~~~~--~~~gs~ilvTtr~~~~~-~~~--~~-~~~~~~l~~L~~~~~~~lf~~~~ 141 (674)
.+.. ...+.+...+.. +-.|--|+..|..++.. ... .+ -...+.-+.-++.+-.+++....
T Consensus 769 fdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 769 FDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred ccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence 7543 113334333322 23455555444333322 111 12 23344555556777788887666
Q ss_pred CCCCCCCchhHHHHHHHHHhCCchh
Q 048755 142 GDCIENGELKSVATEVVKECAGLPI 166 (674)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~c~g~Pl 166 (674)
.....+. .--.+.++.+.+|..-
T Consensus 849 ~s~~~~~--~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 849 NSLLKDT--DVDLECLAQKTDGFTG 871 (952)
T ss_pred hccCCcc--ccchHHHhhhcCCCch
Confidence 4111111 1124556666666643
No 457
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=80.98 E-value=1.5 Score=42.90 Aligned_cols=30 Identities=27% Similarity=0.480 Sum_probs=23.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT 34 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 34 (674)
||+||||+|..++......+ .|.=|+....
T Consensus 11 GGvGKTT~a~nLA~~La~~G---rVLliD~Dpq 40 (264)
T PRK13231 11 GGIGKSTTVSNMAAAYSNDH---RVLVIGCDPK 40 (264)
T ss_pred CCCcHHHHHHHHhcccCCCC---EEEEEeEccC
Confidence 89999999999999887542 4666666543
No 458
>PRK10037 cell division protein; Provisional
Probab=80.95 E-value=1.1 Score=43.42 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=22.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 33 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 33 (674)
||+||||+|..++.....+.+ .|.=|+...
T Consensus 11 GGvGKTT~a~nLA~~La~~G~--rVLlID~D~ 40 (250)
T PRK10037 11 GGVGTTSITAALAWSLQMLGE--NVLVIDACP 40 (250)
T ss_pred CCccHHHHHHHHHHHHHhcCC--cEEEEeCCh
Confidence 899999999999998775522 466666643
No 459
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.80 E-value=0.061 Score=49.44 Aligned_cols=84 Identities=10% Similarity=0.075 Sum_probs=59.3
Q ss_pred CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCC-cccccCcCCccEEec
Q 048755 328 ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGD-IAIIGDLKKLEILTL 406 (674)
Q Consensus 328 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l 406 (674)
.....+.|+++.|+...+... |+.+..|..|+++.+.+..+|..++.+..++.+++..|..+. |.+.+..++++++++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 556667777777666555443 456677777778877777778777777777777777666655 677777777777777
Q ss_pred CCCCch
Q 048755 407 RGSDME 412 (674)
Q Consensus 407 ~~~~~~ 412 (674)
.+|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 777654
No 460
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=80.75 E-value=1.1 Score=38.31 Aligned_cols=18 Identities=39% Similarity=0.320 Sum_probs=15.6
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
-|+||||+++.++.....
T Consensus 31 lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 31 LGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCHHHHHHHHHHHcCC
Confidence 499999999999998654
No 461
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=80.69 E-value=3 Score=37.76 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
.|.|||||++.++...+
T Consensus 37 nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 37 SGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCCHHHHHHHHHhccC
Confidence 59999999999998654
No 462
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=80.67 E-value=9 Score=37.43 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=44.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc-CHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHc-CCcEEEEEe
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKK-ETKILIILD 79 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~kr~LlVlD 79 (674)
+|+||||+++.++.....+. ..+..++..... ...+-++..++.++.+.....+.......++.+.. ++.=++++|
T Consensus 84 ~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViID 161 (270)
T PRK06731 84 TGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILID 161 (270)
T ss_pred CCCcHHHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 69999999999988765432 235556554321 23333344445555443332233334444555542 245688899
Q ss_pred CCCC
Q 048755 80 DIWG 83 (674)
Q Consensus 80 dv~~ 83 (674)
....
T Consensus 162 t~Gr 165 (270)
T PRK06731 162 TAGK 165 (270)
T ss_pred CCCC
Confidence 8743
No 463
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=80.66 E-value=1.1 Score=40.66 Aligned_cols=18 Identities=11% Similarity=0.231 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
.+|+||||+|+++.....
T Consensus 10 ~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 10 GSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCCCCHHHHHHHHHHhhC
Confidence 479999999999988754
No 464
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=80.62 E-value=6.5 Score=41.39 Aligned_cols=79 Identities=19% Similarity=0.334 Sum_probs=42.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCC-------CcccchH------HHHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLK-------IDEESET------VRAWRLLEQL 68 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~~~~~l 68 (674)
.|+|||||++.+....... .+++++.--+...+.++.++.+..-+.. ..+++.. ..+..+.++.
T Consensus 167 sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a~~iAEyf 243 (438)
T PRK07721 167 SGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYF 243 (438)
T ss_pred CCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 5999999999998865532 2455543334444555544422211110 1111111 1122344444
Q ss_pred H-cCCcEEEEEeCCCC
Q 048755 69 K-KETKILIILDDIWG 83 (674)
Q Consensus 69 ~-~~kr~LlVlDdv~~ 83 (674)
. +|+.+|+++||+..
T Consensus 244 r~~g~~Vll~~Dsltr 259 (438)
T PRK07721 244 RDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHCCCcEEEEEeChHH
Confidence 2 57999999999854
No 465
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=80.60 E-value=8.3 Score=40.52 Aligned_cols=79 Identities=20% Similarity=0.376 Sum_probs=42.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC-CcCHHHHHHHHHHHhCCCC-------cccchHH------HHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKI-------DEESETV------RAWRLLEQ 67 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~------~~~~~~~~ 67 (674)
.|+|||||++.++.... .+.++...+.. ...+.++.+.+...-+... .++.... .+..+.++
T Consensus 177 sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a~aiAEy 252 (451)
T PRK05688 177 TGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEY 252 (451)
T ss_pred CCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999987533 23333333332 3345555555554432221 1111111 11223344
Q ss_pred HH-cCCcEEEEEeCCCCc
Q 048755 68 LK-KETKILIILDDIWGS 84 (674)
Q Consensus 68 l~-~~kr~LlVlDdv~~~ 84 (674)
.. +|+++|+++||+...
T Consensus 253 frd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 253 FRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHCCCCEEEEecchhHH
Confidence 42 579999999998654
No 466
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=80.55 E-value=1.2 Score=43.87 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=21.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEec
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVS 32 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~ 32 (674)
||+||||+|..++.....+. . .+.=|+..
T Consensus 11 GGVGKTT~~~nLA~~la~~G-~-kVLliD~D 39 (270)
T PRK13185 11 GGIGKSTTSSNLSAAFAKLG-K-KVLQIGCD 39 (270)
T ss_pred CCCCHHHHHHHHHHHHHHCC-C-eEEEEecc
Confidence 89999999999999887542 2 35555554
No 467
>PRK06547 hypothetical protein; Provisional
Probab=80.50 E-value=1.2 Score=40.30 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
.+|+||||+|+.+++...
T Consensus 23 ~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 23 RSGSGKTTLAGALAARTG 40 (172)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 379999999999998754
No 468
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=80.42 E-value=1.5 Score=39.39 Aligned_cols=104 Identities=20% Similarity=0.226 Sum_probs=50.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC--CcCHHHHHHHHHHHhCCCCcccchHHH-HHHHHHHHHcCCcEEEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ--TPQIKEIQREIAEKLGLKIDEESETVR-AWRLLEQLKKETKILIIL 78 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~l~~~kr~LlVl 78 (674)
.|.|||||.+.++..... ..+.++++-.. ..+..+..+ ..++.-. +-+..+. ...+...+.. ++=++++
T Consensus 35 nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-qLS~G~~qrl~laral~~-~p~illl 106 (163)
T cd03216 35 NGAGKSTLMKILSGLYKP---DSGEILVDGKEVSFASPRDARR---AGIAMVY-QLSVGERQMVEIARALAR-NARLLIL 106 (163)
T ss_pred CCCCHHHHHHHHhCCCCC---CCeEEEECCEECCcCCHHHHHh---cCeEEEE-ecCHHHHHHHHHHHHHhc-CCCEEEE
Confidence 599999999999886543 34555543211 111111111 1111100 0111111 2234444554 5788999
Q ss_pred eCCCCccc---hhhccCCcCC-CCCCeEEEEEeCChhhh
Q 048755 79 DDIWGSLD---LEAIGIPVAD-DNGGCKVLLTARSQDVL 113 (674)
Q Consensus 79 Ddv~~~~~---~~~l~~~~~~-~~~gs~ilvTtr~~~~~ 113 (674)
|+....-| ...+...+.. ...|..||++|.+....
T Consensus 107 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 107 DEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 98764422 2222222211 12355688888887643
No 469
>PRK06696 uridine kinase; Validated
Probab=80.40 E-value=2.5 Score=40.20 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=16.7
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
+|+||||+|++++......
T Consensus 31 sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 31 TASGKTTFADELAEEIKKR 49 (223)
T ss_pred CCCCHHHHHHHHHHHHHHc
Confidence 7999999999999988644
No 470
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=80.31 E-value=1.6 Score=38.48 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISS 29 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv 29 (674)
+|+||+||.+.+|.++... .+.+||
T Consensus 46 SG~GKStllr~LYaNY~~d---~G~I~v 70 (235)
T COG4778 46 SGSGKSTLLRSLYANYLPD---EGQILV 70 (235)
T ss_pred CCCcHHHHHHHHHhccCCC---CceEEE
Confidence 6999999999999988865 457886
No 471
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=80.28 E-value=1.2 Score=44.04 Aligned_cols=29 Identities=34% Similarity=0.485 Sum_probs=21.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEec
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVS 32 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~ 32 (674)
||+||||+|..++........ .+.=|+..
T Consensus 10 GGVGKTT~a~nLA~~La~~G~--rVLliD~D 38 (279)
T PRK13230 10 GGIGKSTTVCNIAAALAESGK--KVLVVGCD 38 (279)
T ss_pred CCCcHHHHHHHHHHHHHhCCC--EEEEEeeC
Confidence 899999999999998875421 35555543
No 472
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=80.28 E-value=4.2 Score=44.87 Aligned_cols=45 Identities=16% Similarity=0.064 Sum_probs=29.6
Q ss_pred CCCcHHHHHHHHHHhhhhccc-CceEEEEEecCCcCHHHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNL-FEKVISSRVSQTPQIKEIQREIAE 46 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~i~~ 46 (674)
+|.||||+++++......... =...+.+...+..-...+.+.+..
T Consensus 176 pGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 176 PGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 699999999999887643211 123566666666666666666544
No 473
>PRK10646 ADP-binding protein; Provisional
Probab=80.25 E-value=1.1 Score=39.24 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.6
Q ss_pred CCcHHHHHHHHHHhhhhc
Q 048755 3 GIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 3 GiGKTtla~~~~~~~~~~ 20 (674)
|+||||++|.++......
T Consensus 38 GaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 38 GAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred CCCHHHHHHHHHHHcCCC
Confidence 899999999999877543
No 474
>PRK05439 pantothenate kinase; Provisional
Probab=80.16 E-value=6 Score=39.41 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=34.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHH--HHHHhCCCCcccchHHHHHHHHHHHHcCCc
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE--IAEKLGLKIDEESETVRAWRLLEQLKKETK 73 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~--i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr 73 (674)
.|+||||+|+.+.........-..+.-++..+-+...+.+.+ +...-+ ..+.-+.......++.+..|+.
T Consensus 95 ~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg--~Pes~D~~~l~~~L~~Lk~G~~ 166 (311)
T PRK05439 95 VAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKG--FPESYDMRALLRFLSDVKSGKP 166 (311)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCC--CcccccHHHHHHHHHHHHcCCC
Confidence 699999999999886653211122444444332222222211 111111 1122344455666777776654
No 475
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=80.13 E-value=4.7 Score=38.44 Aligned_cols=19 Identities=21% Similarity=0.552 Sum_probs=16.6
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
||+||||+|..++.....+
T Consensus 12 GGvGKSt~a~~la~~l~~~ 30 (241)
T PRK13886 12 GGVGKSFIAATIAQYKASK 30 (241)
T ss_pred CCCcHHHHHHHHHHHHHhC
Confidence 8999999999999877654
No 476
>PRK14529 adenylate kinase; Provisional
Probab=80.03 E-value=5.9 Score=37.43 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=39.2
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCc-e-EEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFE-K-VISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIIL 78 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~-~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVl 78 (674)
..|+||||+|+.++..+... +.+ + .+.-.+......-+..+++++. ..-.++......+.+++.....-=+||
T Consensus 8 ~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~----G~lvpdei~~~lv~~~l~~~~~~g~iL 82 (223)
T PRK14529 8 PNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDR----GDLVPDDITIPMILETLKQDGKNGWLL 82 (223)
T ss_pred CCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhc----cCcchHHHHHHHHHHHHhccCCCcEEE
Confidence 47999999999999887643 121 1 1111222222222333333332 122233333344455554322345899
Q ss_pred eCCCCc
Q 048755 79 DDIWGS 84 (674)
Q Consensus 79 Ddv~~~ 84 (674)
|..-..
T Consensus 83 DGfPRt 88 (223)
T PRK14529 83 DGFPRN 88 (223)
T ss_pred eCCCCC
Confidence 988543
No 477
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=79.94 E-value=3.6 Score=37.76 Aligned_cols=43 Identities=28% Similarity=0.420 Sum_probs=27.5
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEec-CCcCHHHHHHHHHH
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVS-QTPQIKEIQREIAE 46 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~ 46 (674)
+-|+||||+++.+++....... . +-++.. ......+..++++.
T Consensus 4 iDGsGKtT~~~~L~~~l~~~~~--~-~~~~~~~~~~~~g~~ir~~l~ 47 (186)
T PF02223_consen 4 IDGSGKTTQIRLLAEALKEKGY--K-VIITFPPGSTPIGELIRELLR 47 (186)
T ss_dssp STTSSHHHHHHHHHHHHHHTTE--E-EEEEESSTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCC--c-ccccCCCCCChHHHHHHHHHh
Confidence 3599999999999999887732 2 222332 22234456666666
No 478
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=79.89 E-value=5.8 Score=37.25 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
.+|+||||+|+.++..+.
T Consensus 7 ~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 7 PPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 379999999999987654
No 479
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=79.85 E-value=9 Score=36.84 Aligned_cols=75 Identities=13% Similarity=0.203 Sum_probs=52.4
Q ss_pred cceEecCCCCHHHHHHHHHHHhC-CCCCCCchhHHHHHHHHHhCCchhhHHHHHHHHh--c-------C--ChHHHHHHH
Q 048755 120 QQNFVVDVLNEKEAWSLFKKMTG-DCIENGELKSVATEVVKECAGLPIAIVPVAKALK--N-------K--SLYEWRNAL 187 (674)
Q Consensus 120 ~~~~~l~~L~~~~~~~lf~~~~~-~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~--~-------~--~~~~w~~~l 187 (674)
.-.+++..-+++|....+.+.+. +...-| .+.+++|+++++|.-.-.-.+-...+ + . +.-+|+-++
T Consensus 178 Cl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i 255 (351)
T KOG2035|consen 178 CLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYI 255 (351)
T ss_pred eeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHH
Confidence 45788999999999999988774 222222 68999999999997655444444443 1 1 456898888
Q ss_pred HHhcccccc
Q 048755 188 RQLKRPFLR 196 (674)
Q Consensus 188 ~~l~~~~~~ 196 (674)
.+..+....
T Consensus 256 ~e~a~~i~~ 264 (351)
T KOG2035|consen 256 QEIARVILK 264 (351)
T ss_pred HHHHHHHHh
Confidence 877665544
No 480
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=79.77 E-value=1.2 Score=40.71 Aligned_cols=17 Identities=41% Similarity=0.366 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
+|+||||+|+.++....
T Consensus 8 sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 8 TNSGKTTLAKLLQRILP 24 (187)
T ss_pred CCCCHHHHHHHHHHHcC
Confidence 69999999999999863
No 481
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=79.77 E-value=1.4 Score=39.65 Aligned_cols=18 Identities=50% Similarity=0.691 Sum_probs=16.0
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
.|+||||+++.+++..+.
T Consensus 8 pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 8 PGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhc
Confidence 699999999999998854
No 482
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=79.67 E-value=4.4 Score=42.96 Aligned_cols=80 Identities=24% Similarity=0.273 Sum_probs=44.4
Q ss_pred CCCcHHHHH-HHHHHhhhhcccCceEEEEEecCCc-CHHHHHHHHHHHhCCCC------cccchHH------HHHHHHHH
Q 048755 2 GGIGKTTLV-KEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKI------DEESETV------RAWRLLEQ 67 (674)
Q Consensus 2 gGiGKTtla-~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~------~~~~~~~~ 67 (674)
.|+|||++| ..++++.... + .++++-+.+.. .+.++.+++.+.=.... ..++... ....+.++
T Consensus 152 ~gtGKT~lal~~I~~q~~~d--v-~~V~~~IGer~~ev~~~~~~l~~~gal~~tvvV~atsd~~~~r~~ap~~a~tiAEy 228 (507)
T PRK07165 152 RQTGKTHIALNTIINQKNTN--V-KCIYVAIGQKRENLSRIYETLKEHDALKNTIIIDAPSTSPYEQYLAPYVAMAHAEN 228 (507)
T ss_pred CCCCccHHHHHHHHHhcCCC--e-EEEEEEccCChHHHHHHHHHhhhcCceeeeEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 589999996 5677664321 2 23666666544 55666666654321111 1111111 12234555
Q ss_pred HHcCCcEEEEEeCCCCc
Q 048755 68 LKKETKILIILDDIWGS 84 (674)
Q Consensus 68 l~~~kr~LlVlDdv~~~ 84 (674)
+...+.+|+|+||+...
T Consensus 229 frd~~dVLlv~DdLTr~ 245 (507)
T PRK07165 229 ISYNDDVLIVFDDLTKH 245 (507)
T ss_pred HHhcCceEEEEcChHHH
Confidence 55448999999998643
No 483
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=79.48 E-value=2.1 Score=40.77 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=22.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEec
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVS 32 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~ 32 (674)
||+||||++..++.-....++ .|.=|+++
T Consensus 11 GGvG~TTltAnLA~aL~~~G~--~VlaID~d 39 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARLGE--SVLAIDLD 39 (243)
T ss_pred CCCCHHHHHHHHHHHHHHCCC--cEEEEeCC
Confidence 899999999999998886532 46666664
No 484
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=79.41 E-value=1.4 Score=42.86 Aligned_cols=29 Identities=31% Similarity=0.504 Sum_probs=20.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEec
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVS 32 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~ 32 (674)
||+||||+|..++......+ ..+.-|+..
T Consensus 10 GGvGKTt~a~~LA~~la~~g--~~VlliD~D 38 (251)
T TIGR01969 10 GGTGKTTITANLGVALAKLG--KKVLALDAD 38 (251)
T ss_pred CCCcHHHHHHHHHHHHHHCC--CeEEEEeCC
Confidence 89999999999998776442 135555543
No 485
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=79.33 E-value=9.8 Score=35.01 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=37.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCce----EEEEEecCCcCHHHHHHHHHHHhCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEK----VISSRVSQTPQIKEIQREIAEKLGL 50 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~----~~wv~~~~~~~~~~~~~~i~~~l~~ 50 (674)
||.|||.+..++.-+--.-+.|.+ |.+++.+..|++..+.+.+-..+..
T Consensus 47 ~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q 99 (293)
T KOG2859|consen 47 GNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQ 99 (293)
T ss_pred CCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHH
Confidence 799999999988776444344644 7778999999999988887666643
No 486
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=79.24 E-value=1.3 Score=37.99 Aligned_cols=19 Identities=21% Similarity=0.358 Sum_probs=17.1
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
+|+||||++++++.+...+
T Consensus 4 sG~GKStvg~~lA~~lg~~ 22 (161)
T COG3265 4 SGSGKSTVGSALAERLGAK 22 (161)
T ss_pred CccCHHHHHHHHHHHcCCc
Confidence 6999999999999988855
No 487
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=79.19 E-value=4.1 Score=37.68 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=16.9
Q ss_pred CCCCcHHHHHHHHHHhhhhc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~ 20 (674)
+-|+||||+|+.+++....+
T Consensus 8 ~~GsGKtT~~~~L~~~l~~~ 27 (200)
T cd01672 8 IDGAGKTTLIELLAERLEAR 27 (200)
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 35999999999999988643
No 488
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=79.15 E-value=7.1 Score=37.10 Aligned_cols=38 Identities=26% Similarity=0.182 Sum_probs=26.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE 43 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 43 (674)
.|+|||++|.+++.....+ =..+++++... +.+++.+.
T Consensus 25 ~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~--~~~~l~~~ 62 (224)
T TIGR03880 25 YGTGKTTFSLQFLYQGLKN--GEKAMYISLEE--REERILGY 62 (224)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEEECCC--CHHHHHHH
Confidence 5999999999998765443 23577777755 44555444
No 489
>PRK13946 shikimate kinase; Provisional
Probab=79.11 E-value=1.4 Score=40.54 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=16.7
Q ss_pred CCCCcHHHHHHHHHHhhhh
Q 048755 1 MGGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~ 19 (674)
|.|+||||+|+.++++...
T Consensus 18 ~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 18 LMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCCCCHHHHHHHHHHHcCC
Confidence 5799999999999998753
No 490
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=79.05 E-value=1.3 Score=39.42 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=17.1
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
.|+||||+++.++......
T Consensus 1 ~GsGKStvg~~lA~~L~~~ 19 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRP 19 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSE
T ss_pred CCCcHHHHHHHHHHHhCCC
Confidence 4999999999999998855
No 491
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=79.01 E-value=2.5 Score=35.25 Aligned_cols=28 Identities=32% Similarity=0.539 Sum_probs=20.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEe
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRV 31 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~ 31 (674)
||+||||++..++.....+. ..+.-++.
T Consensus 8 gG~GKTt~a~~la~~l~~~g--~~V~~id~ 35 (116)
T cd02034 8 GGVGKTTIAALLARYLAEKG--KPVLAIDA 35 (116)
T ss_pred CCCCHHHHHHHHHHHHHHCC--CcEEEEEC
Confidence 89999999999999886542 23554554
No 492
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=79.01 E-value=6.7 Score=41.93 Aligned_cols=79 Identities=18% Similarity=0.302 Sum_probs=44.9
Q ss_pred CCCcHHHHH-HHHHHhhhhcccCce-EEEEEecCC-cCHHHHHHHHHHHhCCCC-------cccchHH------HHHHHH
Q 048755 2 GGIGKTTLV-KEVGRQAKENNLFEK-VISSRVSQT-PQIKEIQREIAEKLGLKI-------DEESETV------RAWRLL 65 (674)
Q Consensus 2 gGiGKTtla-~~~~~~~~~~~~F~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~------~~~~~~ 65 (674)
.|+|||+|| .++++... -+. ++++-+.+. ..+.++.+.+...=.... .+++... ....+.
T Consensus 170 ~g~GKt~Lal~~i~~~~~----~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~~a~aiA 245 (501)
T TIGR00962 170 RQTGKTAVAIDTIINQKD----SDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPYTGCTMA 245 (501)
T ss_pred CCCCccHHHHHHHHhhcC----CCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 399999996 66776532 344 366666654 356667766665422211 1111111 122333
Q ss_pred HHHH-cCCcEEEEEeCCCCc
Q 048755 66 EQLK-KETKILIILDDIWGS 84 (674)
Q Consensus 66 ~~l~-~~kr~LlVlDdv~~~ 84 (674)
++.. +|+.+|+|+||+...
T Consensus 246 Eyfrd~G~~VLlv~Ddltr~ 265 (501)
T TIGR00962 246 EYFRDNGKHALIIYDDLSKH 265 (501)
T ss_pred HHHHHcCCCEEEEecchHHH
Confidence 3443 479999999998654
No 493
>PRK04182 cytidylate kinase; Provisional
Probab=78.98 E-value=2.9 Score=38.06 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++++..
T Consensus 8 ~~GsGKstia~~la~~lg 25 (180)
T PRK04182 8 PPGSGKTTVARLLAEKLG 25 (180)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999998765
No 494
>PRK14531 adenylate kinase; Provisional
Probab=78.94 E-value=5.5 Score=36.43 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
.+|+||||+|+.++....
T Consensus 10 ~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 10 PPGAGKGTQAARLCAAHG 27 (183)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 379999999999988764
No 495
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=78.93 E-value=1.4 Score=43.42 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=16.7
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
||+||||+|..++......
T Consensus 10 GGVGKTT~a~nLA~~La~~ 28 (273)
T PRK13232 10 GGIGKSTTTQNLTAALSTM 28 (273)
T ss_pred CCCcHHHHHHHHHHHHHhh
Confidence 8999999999999887754
No 496
>PRK13949 shikimate kinase; Provisional
Probab=78.88 E-value=1.4 Score=39.74 Aligned_cols=18 Identities=44% Similarity=0.505 Sum_probs=16.2
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 9 ~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 9 YMGAGKTTLGKALARELG 26 (169)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 579999999999999876
No 497
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=78.83 E-value=1.4 Score=39.49 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
..|+||||+|+.+.....
T Consensus 6 ~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 6 VAGSGKSTIASALAHRLG 23 (163)
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 379999999999998763
No 498
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=78.83 E-value=1.4 Score=43.40 Aligned_cols=29 Identities=31% Similarity=0.354 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEec
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVS 32 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~ 32 (674)
||+||||+|..++......+ + .|.=|+..
T Consensus 10 GGVGKTT~~~nLA~~La~~G-~-rVLlID~D 38 (274)
T PRK13235 10 GGIGKSTTTQNTVAGLAEMG-K-KVMVVGCD 38 (274)
T ss_pred CCccHHHHHHHHHHHHHHCC-C-cEEEEecC
Confidence 89999999999998877542 2 34445553
No 499
>PRK04040 adenylate kinase; Provisional
Probab=78.82 E-value=1.4 Score=40.44 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=16.1
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
++|+||||+++.++....
T Consensus 10 ~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 10 VPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 579999999999999875
No 500
>PRK14527 adenylate kinase; Provisional
Probab=78.79 E-value=5.4 Score=36.78 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
+|+||||+|+.+++.+.
T Consensus 15 pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 15 PGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 79999999999988765
Done!